Psyllid ID: psy1315
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 202 | 2.2.26 [Sep-21-2011] | |||||||
| P61208 | 192 | ADP-ribosylation factor-l | yes | N/A | 0.900 | 0.947 | 0.604 | 2e-61 | |
| P56559 | 192 | ADP-ribosylation factor-l | yes | N/A | 0.900 | 0.947 | 0.604 | 2e-61 | |
| P61214 | 200 | ADP-ribosylation factor-l | yes | N/A | 0.881 | 0.89 | 0.595 | 1e-60 | |
| P61213 | 200 | ADP-ribosylation factor-l | no | N/A | 0.881 | 0.89 | 0.595 | 1e-60 | |
| Q3T0M9 | 200 | ADP-ribosylation factor-l | no | N/A | 0.881 | 0.89 | 0.595 | 1e-60 | |
| P40617 | 200 | ADP-ribosylation factor-l | no | N/A | 0.881 | 0.89 | 0.595 | 1e-60 | |
| Q99PE9 | 201 | ADP-ribosylation factor-l | no | N/A | 0.960 | 0.965 | 0.477 | 1e-56 | |
| Q5REU3 | 201 | ADP-ribosylation factor-l | no | N/A | 0.960 | 0.965 | 0.472 | 1e-51 | |
| P49703 | 201 | ADP-ribosylation factor-l | no | N/A | 0.960 | 0.965 | 0.472 | 1e-51 | |
| Q0VC18 | 200 | ADP-ribosylation factor-l | no | N/A | 0.940 | 0.95 | 0.471 | 1e-50 |
| >sp|P61208|ARL4C_MOUSE ADP-ribosylation factor-like protein 4C OS=Mus musculus GN=Arl4c PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 235 bits (599), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 140/182 (76%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
S S+HIVMLGLDSAGKTT LYRLKF++++NTVPTIGFN EK+K G KGI+ WD
Sbjct: 9 SAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWD 68
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
VGGQEKLRPLWKSY+RCTDGII+V+DS DV+R+EE K EL K K +N P+L++ANK
Sbjct: 69 VGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANK 128
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKT 194
QDLP ++ + +IEK L L+EL Y++Q CAI G+GL EG+++LY++ILK+RK K
Sbjct: 129 QDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKRRKSLKQ 188
Query: 195 NK 196
K
Sbjct: 189 KK 190
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. May be involved in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Recruits CYTH1, CYTH2, CYTH3 and CYTH4 to the plasma membrane in the GDP-bound form. Regulates the microtubule-dependent intracellular vesicular transport from early endosome to recycling endosome process. Mus musculus (taxid: 10090) |
| >sp|P56559|ARL4C_HUMAN ADP-ribosylation factor-like protein 4C OS=Homo sapiens GN=ARL4C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 140/182 (76%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
S S+HIVMLGLDSAGKTT LYRLKF++++NTVPTIGFN EK+K G KGI+ WD
Sbjct: 9 SAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWD 68
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
VGGQEKLRPLWKSY+RCTDGII+V+DS DV+R+EE K EL K K +N P+L++ANK
Sbjct: 69 VGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANK 128
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKT 194
QDLP ++ + +IEK L L+EL Y++Q CAI G+GL EG+++LY++ILK+RK K
Sbjct: 129 QDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKRRKSLKQ 188
Query: 195 NK 196
K
Sbjct: 189 KK 190
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. May be involved in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Recruits CYTH1, CYTH2, CYTH3 and CYTH4 to the plasma membrane in the GDP-bound form. Regulates the microtubule-dependent intracellular vesicular transport from early endosome to recycling endosome process. Homo sapiens (taxid: 9606) |
| >sp|P61214|ARL4A_RAT ADP-ribosylation factor-like protein 4A OS=Rattus norvegicus GN=Arl4a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/178 (59%), Positives = 140/178 (78%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
S HIV+LGLD AGKTT LYRL+F++++NTVPT GFN EK+K +G K + F WDVGGQ
Sbjct: 20 SFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQ 79
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
EKLRPLWKSYTRCTDGI+FV+DS DVERMEE K EL K + ++N VP+LI+ANKQDL
Sbjct: 80 EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLR 139
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNK 196
N++ + +IEKLL + EL++ +++Q TCAI GDGL EG+ +L+ +I+K+RK+ + K
Sbjct: 140 NSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQQK 197
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Recruits CYTH1, CYTH2, CYTH3 and CYTH4 to the plasma membrane in GDP-bound form. Rattus norvegicus (taxid: 10116) |
| >sp|P61213|ARL4A_MOUSE ADP-ribosylation factor-like protein 4A OS=Mus musculus GN=Arl4a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/178 (59%), Positives = 140/178 (78%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
S HIV+LGLD AGKTT LYRL+F++++NTVPT GFN EK+K +G K + F WDVGGQ
Sbjct: 20 SFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQ 79
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
EKLRPLWKSYTRCTDGI+FV+DS DVERMEE K EL K + ++N VP+LI+ANKQDL
Sbjct: 80 EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLR 139
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNK 196
N++ + +IEKLL + EL++ +++Q TCAI GDGL EG+ +L+ +I+K+RK+ + K
Sbjct: 140 NSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQQK 197
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Recruits CYTH1, CYTH2, CYTH3 and CYTH4 to the plasma membrane in GDP-bound form. Mus musculus (taxid: 10090) |
| >sp|Q3T0M9|ARL4A_BOVIN ADP-ribosylation factor-like protein 4A OS=Bos taurus GN=ARL4A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/178 (59%), Positives = 140/178 (78%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
S HIV+LGLD AGKTT LYRL+F++++NTVPT GFN EK+K +G K + F WDVGGQ
Sbjct: 20 SFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQ 79
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
EKLRPLWKSYTRCTDGI+FV+DS DVERMEE K EL K + ++N VP+LI+ANKQDL
Sbjct: 80 EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLR 139
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNK 196
N++ + +IEKLL + EL++ +++Q TCAI GDGL EG+ +L+ +I+K+RK+ + K
Sbjct: 140 NSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQQK 197
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Recruits CYTH1, CYTH2, CYTH3 and CYTH4 to the plasma membrane in GDP-bound form. Bos taurus (taxid: 9913) |
| >sp|P40617|ARL4A_HUMAN ADP-ribosylation factor-like protein 4A OS=Homo sapiens GN=ARL4A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/178 (59%), Positives = 140/178 (78%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
S HIV+LGLD AGKTT LYRL+F++++NTVPT GFN EK+K +G K + F WDVGGQ
Sbjct: 20 SFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQ 79
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
EKLRPLWKSYTRCTDGI+FV+DS DVERMEE K EL K + ++N VP+LI+ANKQDL
Sbjct: 80 EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLR 139
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNK 196
N++ + +IEKLL + EL++ +++Q TCAI GDGL EG+ +L+ +I+K+RK+ + K
Sbjct: 140 NSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQQK 197
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Recruits CYTH1, CYTH2, CYTH3 and CYTH4 to the plasma membrane in GDP-bound form. Homo sapiens (taxid: 9606) |
| >sp|Q99PE9|ARL4D_MOUSE ADP-ribosylation factor-like protein 4D OS=Mus musculus GN=Arl4d PE=2 SV=2 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 141/199 (70%), Gaps = 5/199 (2%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
M +++F + QA +H+V++GLDSAGKT+ LYRLKF +++ +VPT GFN EK++
Sbjct: 8 MAPTASSFLPHFQA-----LHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRV 62
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
+G +GI F +WDVGGQEKLRPLW+SYTR TDG++FV+DS + ER+EE ++EL + K
Sbjct: 63 PLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDSAETERLEEARMELHRISKA 122
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
+DN VP+L+LANKQD P A+ ++EK L + EL L ++Q A+ G GL G+
Sbjct: 123 SDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQPGLEH 182
Query: 181 LYQLILKKRKLQKTNKMNK 199
LY++ILK++K +++K +
Sbjct: 183 LYEMILKRKKAPRSSKKRR 201
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Recruits CYTH1, CYTH2, CYTH3 and CYTH4 to the plasma membrane in GDP-bound form. Mus musculus (taxid: 10090) |
| >sp|Q5REU3|ARL4D_PONAB ADP-ribosylation factor-like protein 4D OS=Pongo abelii GN=ARL4D PE=2 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 140/199 (70%), Gaps = 5/199 (2%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
M +++F + QA +H+V++GLDSAGKT+ LYRLKF +++ +VPT GFN EK++
Sbjct: 8 MAPTASSFLPHFQA-----LHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRV 62
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
+G +GI F +WDVGGQEKLRPLW+SYTR TDG++FV+D+ + ER+EE K+EL + +
Sbjct: 63 PLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRA 122
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
+DN VP+L+LANKQD P A+ ++EK L + EL L ++Q A+ G GL +G+
Sbjct: 123 SDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGLER 182
Query: 181 LYQLILKKRKLQKTNKMNK 199
LY++ILK++K + K +
Sbjct: 183 LYEMILKRKKAARGGKKRR 201
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Recruits CYTH1, CYTH2, CYTH3 and CYTH4 to the plasma membrane in GDP-bound form. Pongo abelii (taxid: 9601) |
| >sp|P49703|ARL4D_HUMAN ADP-ribosylation factor-like protein 4D OS=Homo sapiens GN=ARL4D PE=1 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 140/199 (70%), Gaps = 5/199 (2%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
M +++F + QA +H+V++GLDSAGKT+ LYRLKF +++ +VPT GFN EK++
Sbjct: 8 MAPTASSFLPHFQA-----LHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRV 62
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
+G +GI F +WDVGGQEKLRPLW+SYTR TDG++FV+D+ + ER+EE K+EL + +
Sbjct: 63 PLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRA 122
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
+DN VP+L+LANKQD P A+ ++EK L + EL L ++Q A+ G GL +G+
Sbjct: 123 SDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGLER 182
Query: 181 LYQLILKKRKLQKTNKMNK 199
LY++ILK++K + K +
Sbjct: 183 LYEMILKRKKAARGGKKRR 201
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Recruits CYTH1, CYTH2, CYTH3 and CYTH4 to the plasma membrane in GDP-bound form. Homo sapiens (taxid: 9606) |
| >sp|Q0VC18|ARL4D_BOVIN ADP-ribosylation factor-like protein 4D OS=Bos taurus GN=ARL4D PE=2 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/195 (47%), Positives = 137/195 (70%), Gaps = 5/195 (2%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGK 64
+ +F + QA +H+V++GLDSAGKT+ LYRLKF +++ ++PT GFN EK++ +G
Sbjct: 11 TTSFLPHFQA-----LHVVVIGLDSAGKTSLLYRLKFKEFVQSIPTKGFNTEKIRVPLGG 65
Query: 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF 124
+GI F +WDVGGQEKLRPLW+SYTR TDG++FV+D+ + ER+EE K+EL + + +DN
Sbjct: 66 SRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQ 125
Query: 125 NVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQL 184
VP+L+LANKQD P A+ ++EK L + EL L ++Q A+ G GL G+ LY++
Sbjct: 126 GVPVLVLANKQDQPGALSAAEVEKRLAVRELATATLTHVQGCSAVDGLGLQPGLERLYEM 185
Query: 185 ILKKRKLQKTNKMNK 199
ILK++K + K +
Sbjct: 186 ILKRKKAARAGKKRR 200
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Recruits CYTH1, CYTH2, CYTH3 and CYTH4 to the plasma membrane in GDP-bound form. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 202 | ||||||
| 91092066 | 198 | PREDICTED: similar to GA15309-PA [Tribol | 0.960 | 0.979 | 0.704 | 2e-79 | |
| 357620342 | 205 | hypothetical protein KGM_14739 [Danaus p | 0.960 | 0.946 | 0.679 | 3e-77 | |
| 253735728 | 201 | ADP-ribosylation factor-like 4A [Acyrtho | 0.955 | 0.960 | 0.683 | 4e-75 | |
| 242012215 | 207 | conserved hypothetical protein [Pediculu | 0.960 | 0.937 | 0.666 | 6e-74 | |
| 383865719 | 207 | PREDICTED: ADP-ribosylation factor-like | 0.960 | 0.937 | 0.656 | 8e-74 | |
| 350398189 | 208 | PREDICTED: ADP-ribosylation factor-like | 0.955 | 0.927 | 0.656 | 1e-73 | |
| 110762787 | 207 | PREDICTED: ADP-ribosylation factor-like | 0.960 | 0.937 | 0.656 | 1e-73 | |
| 307166872 | 207 | ADP-ribosylation factor-like protein 4C | 0.960 | 0.937 | 0.656 | 1e-73 | |
| 332027617 | 207 | ADP-ribosylation factor-like protein 4C | 0.960 | 0.937 | 0.651 | 3e-73 | |
| 321475764 | 206 | hypothetical protein DAPPUDRAFT_44292 [D | 0.970 | 0.951 | 0.666 | 5e-73 |
| >gi|91092066|ref|XP_970752.1| PREDICTED: similar to GA15309-PA [Tribolium castaneum] gi|270004696|gb|EFA01144.1| hypothetical protein TcasGA2_TC010369 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 138/196 (70%), Positives = 167/196 (85%), Gaps = 2/196 (1%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MGKN++ + SG ++H+VMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG
Sbjct: 1 MGKNTSLL--DALPSGQGTLHVVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 58
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
+GK KGINFL+WDVGGQEKLRPLWKSYTRCTDGI+FV+DS DVERMEE K+EL++T+K
Sbjct: 59 MMGKAKGINFLVWDVGGQEKLRPLWKSYTRCTDGIVFVLDSVDVERMEEAKMELMRTVKA 118
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
+N VPIL+LANKQDLP A + +++EKLLGL EL+N HL+++Q CAITGDGL EG+
Sbjct: 119 PENSGVPILVLANKQDLPGAREPRELEKLLGLTELSNGHLWHVQPACAITGDGLQEGLEV 178
Query: 181 LYQLILKKRKLQKTNK 196
LY++ILK+RKL K +K
Sbjct: 179 LYEMILKRRKLAKMSK 194
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357620342|gb|EHJ72572.1| hypothetical protein KGM_14739 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 138/203 (67%), Positives = 165/203 (81%), Gaps = 9/203 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MGKNS+ + S ++H+VMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG
Sbjct: 1 MGKNSSLL--DALPSTQGTLHVVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 58
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
IGK KG+NFL+WDVGGQEKLRPLWKSYTRCTDGIIFV+DS DVERMEE K+ELI+T K+
Sbjct: 59 TIGKSKGVNFLVWDVGGQEKLRPLWKSYTRCTDGIIFVLDSVDVERMEEAKMELIRTAKS 118
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYEL-------NNMHLYYIQATCAITGDG 173
DN VPIL+LANKQDLP A + +++EKLLGL+EL + H +++Q CAITG+G
Sbjct: 119 PDNTGVPILVLANKQDLPGAKEPRELEKLLGLHELVSSPHGSRDAHSWHVQPACAITGEG 178
Query: 174 LHEGINELYQLILKKRKLQKTNK 196
LHEG+ L+++ILK+RKL K K
Sbjct: 179 LHEGLEALHEMILKRRKLAKLQK 201
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|253735728|ref|NP_001156712.1| ADP-ribosylation factor-like 4A [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 134/196 (68%), Positives = 161/196 (82%), Gaps = 3/196 (1%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MGK+SA+ + L + S +H+VMLGLDSAGKTTALYRLKF+QYLNTVPTIGFNCEKVKG
Sbjct: 5 MGKSSASLLDAL-PTPQSHLHVVMLGLDSAGKTTALYRLKFNQYLNTVPTIGFNCEKVKG 63
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
+G+ +G FL+WDVGGQEKLRPLWKSYTRCTDGI+FV+DS DVERMEE K+EL +T +
Sbjct: 64 TVGRARGQTFLVWDVGGQEKLRPLWKSYTRCTDGILFVVDSVDVERMEEAKMELARTARA 123
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
+N VPIL+LANKQDLP A ++E+LLGL ELN HL++IQA CAITGDGL EG++
Sbjct: 124 PENTGVPILVLANKQDLPAARDSAELERLLGLNELN--HLWHIQAACAITGDGLQEGLDA 181
Query: 181 LYQLILKKRKLQKTNK 196
LY +ILK+RKL K K
Sbjct: 182 LYDMILKRRKLAKQVK 197
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242012215|ref|XP_002426829.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511042|gb|EEB14091.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 132/198 (66%), Positives = 161/198 (81%), Gaps = 4/198 (2%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MGKNS+ + SG ++H+VMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKV+G
Sbjct: 1 MGKNSSLL--DALPSGQGTLHVVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVRG 58
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
IGK KGINFL+WDVGGQEKLRPLWKSYTRCTDGI+FV+DS DVERMEE K+EL++ ++
Sbjct: 59 TIGKAKGINFLVWDVGGQEKLRPLWKSYTRCTDGIVFVLDSVDVERMEEAKMELVRMARS 118
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLL--GLYELNNMHLYYIQATCAITGDGLHEGI 178
DN VPIL+LANKQDLP A + K++EK + + +HL+++Q CAITGDGLHEG+
Sbjct: 119 PDNSGVPILVLANKQDLPGAKEPKELEKFPCSNVPSVLPVHLWHVQPACAITGDGLHEGM 178
Query: 179 NELYQLILKKRKLQKTNK 196
LY++ILK+RK+ K K
Sbjct: 179 EALYEMILKRRKMAKLCK 196
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383865719|ref|XP_003708320.1| PREDICTED: ADP-ribosylation factor-like protein 4C-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 281 bits (720), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 132/201 (65%), Positives = 160/201 (79%), Gaps = 7/201 (3%)
Query: 1 MGKN--SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKV 58
MG++ S F E L + +H+ MLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCE++
Sbjct: 5 MGRSGTSGGFLEALPTG--TPLHVAMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCERI 62
Query: 59 KGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
+G IGK KG+NFL+WDVGGQEKLRPLWKSYTRCTDGIIFV+DS D ER+EE K+EL +T
Sbjct: 63 RGGIGKAKGVNFLVWDVGGQEKLRPLWKSYTRCTDGIIFVVDSCDAERLEEAKMELTRTA 122
Query: 119 KNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNM---HLYYIQATCAITGDGLH 175
++ DN VPILILANKQDLP A ++ ++EK LG+ EL+ M +Q CAITG+GLH
Sbjct: 123 RSPDNAGVPILILANKQDLPGAKEVGELEKHLGVLELSGMPGSACIKVQPACAITGEGLH 182
Query: 176 EGINELYQLILKKRKLQKTNK 196
EG++ LYQLILK+RKL K N+
Sbjct: 183 EGLDTLYQLILKRRKLAKLNR 203
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350398189|ref|XP_003485113.1| PREDICTED: ADP-ribosylation factor-like protein 4C-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 130/198 (65%), Positives = 156/198 (78%), Gaps = 5/198 (2%)
Query: 2 GKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQ 61
G + F E L + +H+ MLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCE+++G
Sbjct: 9 GTSGGGFLEALPTG--TPLHVAMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCERIRGG 66
Query: 62 IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNN 121
IGK KG+NFL+WDVGGQEKLRPLWKSYTRCTDGIIFV+DS D ER+EE K+EL +T ++
Sbjct: 67 IGKAKGVNFLVWDVGGQEKLRPLWKSYTRCTDGIIFVVDSCDAERLEEAKMELTRTARSP 126
Query: 122 DNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNM---HLYYIQATCAITGDGLHEGI 178
DN VPILILANKQDLP A ++ ++EK LG+ EL M +Q CAITG+GLHEG+
Sbjct: 127 DNAGVPILILANKQDLPGAKEVGELEKHLGVLELAGMPGSACIRVQPACAITGEGLHEGL 186
Query: 179 NELYQLILKKRKLQKTNK 196
+ LYQLILK+RKL K N+
Sbjct: 187 DTLYQLILKRRKLAKLNR 204
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110762787|ref|XP_001120491.1| PREDICTED: ADP-ribosylation factor-like protein 4C-like isoform 1 [Apis mellifera] gi|340724802|ref|XP_003400770.1| PREDICTED: ADP-ribosylation factor-like protein 4C-like [Bombus terrestris] gi|380022398|ref|XP_003695033.1| PREDICTED: ADP-ribosylation factor-like protein 4C-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 132/201 (65%), Positives = 159/201 (79%), Gaps = 7/201 (3%)
Query: 1 MGKN--SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKV 58
MG++ S F E L + +H+ MLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCE++
Sbjct: 5 MGRSGTSGGFLEALPTG--TPLHVAMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCERI 62
Query: 59 KGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
+G IGK KG+NFL+WDVGGQEKLRPLWKSYTRCTDGIIFV+DS D ER+EE K+EL +T
Sbjct: 63 RGGIGKAKGVNFLVWDVGGQEKLRPLWKSYTRCTDGIIFVVDSCDAERLEEAKMELTRTA 122
Query: 119 KNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNM---HLYYIQATCAITGDGLH 175
++ DN VPILILANKQDLP A ++ ++EK LG+ EL M +Q CAITG+GLH
Sbjct: 123 RSPDNAGVPILILANKQDLPGAKEVGELEKHLGVLELAGMPGSACIRVQPACAITGEGLH 182
Query: 176 EGINELYQLILKKRKLQKTNK 196
EG++ LYQLILK+RKL K N+
Sbjct: 183 EGLDTLYQLILKRRKLAKLNR 203
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307166872|gb|EFN60792.1| ADP-ribosylation factor-like protein 4C [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 132/201 (65%), Positives = 158/201 (78%), Gaps = 7/201 (3%)
Query: 1 MGKN--SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKV 58
MG++ S E L + H+ MLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCE++
Sbjct: 5 MGRSGTSGGLLEALPTG--TPFHVAMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCERI 62
Query: 59 KGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
+G IGK KG+NFL+WDVGGQEKLRPLWKSYTRCTDGIIFV+DS D ER+EE K+EL +T
Sbjct: 63 RGGIGKAKGVNFLVWDVGGQEKLRPLWKSYTRCTDGIIFVVDSCDTERLEEAKMELTRTA 122
Query: 119 KNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNM---HLYYIQATCAITGDGLH 175
++ DN NVPILILANKQDLP A ++ ++EK LG+ EL M +Q CAITG+GLH
Sbjct: 123 RSPDNANVPILILANKQDLPGAKEVSELEKHLGVLELTGMPGSSCIRVQPACAITGEGLH 182
Query: 176 EGINELYQLILKKRKLQKTNK 196
EG++ LYQLILK+RKL K N+
Sbjct: 183 EGLDTLYQLILKRRKLAKLNR 203
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332027617|gb|EGI67687.1| ADP-ribosylation factor-like protein 4C [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 131/201 (65%), Positives = 158/201 (78%), Gaps = 7/201 (3%)
Query: 1 MGKN--SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKV 58
MG++ S E L + +H+ MLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCE++
Sbjct: 5 MGRSGTSGGLLEALPTG--TPLHVAMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCERI 62
Query: 59 KGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
+G IGK KG+NFL+WDVGGQEKLRPLWKSYTRCTDGIIFV+DS D ER+EE K+EL +T
Sbjct: 63 RGGIGKAKGVNFLVWDVGGQEKLRPLWKSYTRCTDGIIFVVDSCDTERLEEAKMELTRTA 122
Query: 119 KNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNM---HLYYIQATCAITGDGLH 175
++ DN VPILILANKQDLP A ++ ++EK LG+ EL M +Q CAITG+GLH
Sbjct: 123 RSPDNAGVPILILANKQDLPGAKEVSELEKHLGVLELTGMPGSACIRVQPACAITGEGLH 182
Query: 176 EGINELYQLILKKRKLQKTNK 196
EG++ LYQLILK+RKL K N+
Sbjct: 183 EGLDTLYQLILKRRKLAKLNR 203
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321475764|gb|EFX86726.1| hypothetical protein DAPPUDRAFT_44292 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 132/198 (66%), Positives = 158/198 (79%), Gaps = 2/198 (1%)
Query: 1 MGK-NSAAFFENLQ-ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKV 58
MGK N + ENL S ++HIVMLGLDSAGKTTALYRLKFDQY+NTVPTIGFNCEK+
Sbjct: 1 MGKTNGGSLLENLTLPSTHPTLHIVMLGLDSAGKTTALYRLKFDQYVNTVPTIGFNCEKI 60
Query: 59 KGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
+ GK KG FL+WDVGGQEKLRPLWKSYTRCTD I+FV+DS DVERMEE K+EL++T
Sbjct: 61 RALSGKAKGTQFLVWDVGGQEKLRPLWKSYTRCTDAIVFVVDSVDVERMEEAKMELMRTA 120
Query: 119 KNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178
K+ DN VPILILANKQDLP A K+IEK LGL+EL HLY++Q CAITG+GL +G+
Sbjct: 121 KSPDNSQVPILILANKQDLPGARDPKEIEKHLGLHELGTGHLYHVQPACAITGEGLDDGL 180
Query: 179 NELYQLILKKRKLQKTNK 196
+ LY++I K++K K N+
Sbjct: 181 DILYEMIHKRKKHSKMNR 198
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 202 | ||||||
| ZFIN|ZDB-GENE-050417-265 | 192 | arl4ca "ADP-ribosylation facto | 0.920 | 0.968 | 0.595 | 5.1e-58 | |
| ZFIN|ZDB-GENE-040426-2382 | 192 | arl4cb "ADP-ribosylation facto | 0.920 | 0.968 | 0.601 | 1.1e-57 | |
| UNIPROTKB|E1BZR2 | 200 | ARL4A "Uncharacterized protein | 0.886 | 0.895 | 0.592 | 1.2e-56 | |
| UNIPROTKB|A5PKG0 | 192 | ARL4C "ARL4C protein" [Bos tau | 0.900 | 0.947 | 0.604 | 1.2e-56 | |
| UNIPROTKB|P56559 | 192 | ARL4C "ADP-ribosylation factor | 0.900 | 0.947 | 0.604 | 1.2e-56 | |
| UNIPROTKB|Q4A519 | 201 | ARL7 "ADP-ribosylation factor- | 0.900 | 0.905 | 0.604 | 1.2e-56 | |
| UNIPROTKB|F2Z5S2 | 192 | LOC100620419 "Uncharacterized | 0.900 | 0.947 | 0.604 | 1.2e-56 | |
| MGI|MGI:2445172 | 192 | Arl4c "ADP-ribosylation factor | 0.900 | 0.947 | 0.604 | 1.2e-56 | |
| RGD|1589685 | 192 | Arl4c "ADP-ribosylation factor | 0.900 | 0.947 | 0.604 | 1.2e-56 | |
| UNIPROTKB|Q3T0M9 | 200 | ARL4A "ADP-ribosylation factor | 0.896 | 0.905 | 0.585 | 5.3e-56 |
| ZFIN|ZDB-GENE-050417-265 arl4ca "ADP-ribosylation factor-like 4Ca" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 112/188 (59%), Positives = 145/188 (77%)
Query: 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGI 68
F N+ A S+HIVMLGLDSAGKTT LYRLKF++++NTVPTIGFN EK+K G KGI
Sbjct: 5 FSNIAAF--QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGI 62
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPI 128
+ WDVGGQEKLRPLWKSY+RCTDGII+V+DS DV+R+EE K EL K K +N P+
Sbjct: 63 SCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPL 122
Query: 129 LILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
L++ANKQDLP ++ + +IEK L L+EL+ Y++Q CAI G+GLHEG+++LY++I+K+
Sbjct: 123 LVIANKQDLPKSLTVSEIEKHLALHELSPSTTYHVQPACAIIGEGLHEGMDKLYEMIVKR 182
Query: 189 RKLQKTNK 196
RK K K
Sbjct: 183 RKSLKQKK 190
|
|
| ZFIN|ZDB-GENE-040426-2382 arl4cb "ADP-ribosylation factor-like 4Cb" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 113/188 (60%), Positives = 142/188 (75%)
Query: 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGI 68
F N+ A S+HIVMLGLDSAGKTT LYRLKF++++NTVPTIGFN EK+K G KGI
Sbjct: 5 FSNISAF--QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGI 62
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPI 128
+ WDVGGQEKLRPLWKSY+RCTDGII+V+DS DV+R+EE K EL K K +N P+
Sbjct: 63 SCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPL 122
Query: 129 LILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
L++ANKQDLP ++ + IEK L L EL Y+IQ CAI G+GLHEG+++LY++I+K+
Sbjct: 123 LVIANKQDLPKSLSVADIEKQLALQELTPATTYHIQPACAIIGEGLHEGMDKLYEMIVKR 182
Query: 189 RKLQKTNK 196
RK K K
Sbjct: 183 RKSLKQKK 190
|
|
| UNIPROTKB|E1BZR2 ARL4A "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 106/179 (59%), Positives = 141/179 (78%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
HIV+LGLDSAGKTT LYRL+F++++NTVPT GFN EK+K +G K + F WDVGGQEK
Sbjct: 22 HIVILGLDSAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEK 81
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
LRPLWKSYTRCTDGI+FV+DS DVERMEE K EL K + ++N VP+LI+ANKQDL N+
Sbjct: 82 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNS 141
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKMNK 199
+ + +IEK+L + EL++ +++Q TCAI GDGL EG+ +LY +I+K+RK+ + K +
Sbjct: 142 LSLSEIEKMLAMSELSSSTPWHLQPTCAIIGDGLKEGLEKLYDMIIKRRKMLRQQKKKR 200
|
|
| UNIPROTKB|A5PKG0 ARL4C "ARL4C protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 110/182 (60%), Positives = 140/182 (76%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
S S+HIVMLGLDSAGKTT LYRLKF++++NTVPTIGFN EK+K G KGI+ WD
Sbjct: 9 SAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWD 68
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
VGGQEKLRPLWKSY+RCTDGII+V+DS DV+R+EE K EL K K +N P+L++ANK
Sbjct: 69 VGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANK 128
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKT 194
QDLP ++ + +IEK L L+EL Y++Q CAI G+GL EG+++LY++ILK+RK K
Sbjct: 129 QDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKRRKSLKQ 188
Query: 195 NK 196
K
Sbjct: 189 KK 190
|
|
| UNIPROTKB|P56559 ARL4C "ADP-ribosylation factor-like protein 4C" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 110/182 (60%), Positives = 140/182 (76%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
S S+HIVMLGLDSAGKTT LYRLKF++++NTVPTIGFN EK+K G KGI+ WD
Sbjct: 9 SAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWD 68
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
VGGQEKLRPLWKSY+RCTDGII+V+DS DV+R+EE K EL K K +N P+L++ANK
Sbjct: 69 VGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANK 128
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKT 194
QDLP ++ + +IEK L L+EL Y++Q CAI G+GL EG+++LY++ILK+RK K
Sbjct: 129 QDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKRRKSLKQ 188
Query: 195 NK 196
K
Sbjct: 189 KK 190
|
|
| UNIPROTKB|Q4A519 ARL7 "ADP-ribosylation factor-like protein 4C" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 110/182 (60%), Positives = 140/182 (76%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
S S+HIVMLGLDSAGKTT LYRLKF++++NTVPTIGFN EK+K G KGI+ WD
Sbjct: 9 SAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWD 68
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
VGGQEKLRPLWKSY+RCTDGII+V+DS DV+R+EE K EL K K +N P+L++ANK
Sbjct: 69 VGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANK 128
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKT 194
QDLP ++ + +IEK L L+EL Y++Q CAI G+GL EG+++LY++ILK+RK K
Sbjct: 129 QDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKRRKSLKQ 188
Query: 195 NK 196
K
Sbjct: 189 KK 190
|
|
| UNIPROTKB|F2Z5S2 LOC100620419 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 110/182 (60%), Positives = 140/182 (76%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
S S+HIVMLGLDSAGKTT LYRLKF++++NTVPTIGFN EK+K G KGI+ WD
Sbjct: 9 SAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWD 68
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
VGGQEKLRPLWKSY+RCTDGII+V+DS DV+R+EE K EL K K +N P+L++ANK
Sbjct: 69 VGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANK 128
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKT 194
QDLP ++ + +IEK L L+EL Y++Q CAI G+GL EG+++LY++ILK+RK K
Sbjct: 129 QDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKRRKSLKQ 188
Query: 195 NK 196
K
Sbjct: 189 KK 190
|
|
| MGI|MGI:2445172 Arl4c "ADP-ribosylation factor-like 4C" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 110/182 (60%), Positives = 140/182 (76%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
S S+HIVMLGLDSAGKTT LYRLKF++++NTVPTIGFN EK+K G KGI+ WD
Sbjct: 9 SAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWD 68
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
VGGQEKLRPLWKSY+RCTDGII+V+DS DV+R+EE K EL K K +N P+L++ANK
Sbjct: 69 VGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANK 128
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKT 194
QDLP ++ + +IEK L L+EL Y++Q CAI G+GL EG+++LY++ILK+RK K
Sbjct: 129 QDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKRRKSLKQ 188
Query: 195 NK 196
K
Sbjct: 189 KK 190
|
|
| RGD|1589685 Arl4c "ADP-ribosylation factor-like 4C" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 110/182 (60%), Positives = 140/182 (76%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
S S+HIVMLGLDSAGKTT LYRLKF++++NTVPTIGFN EK+K G KGI+ WD
Sbjct: 9 SAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWD 68
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
VGGQEKLRPLWKSY+RCTDGII+V+DS DV+R+EE K EL K K +N P+L++ANK
Sbjct: 69 VGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANK 128
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKT 194
QDLP ++ + +IEK L L+EL Y++Q CAI G+GL EG+++LY++ILK+RK K
Sbjct: 129 QDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKRRKSLKQ 188
Query: 195 NK 196
K
Sbjct: 189 KK 190
|
|
| UNIPROTKB|Q3T0M9 ARL4A "ADP-ribosylation factor-like protein 4A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 106/181 (58%), Positives = 141/181 (77%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
S HIV+LGLD AGKTT LYRL+F++++NTVPT GFN EK+K +G K + F WDVGGQ
Sbjct: 20 SFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQ 79
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
EKLRPLWKSYTRCTDGI+FV+DS DVERMEE K EL K + ++N VP+LI+ANKQDL
Sbjct: 80 EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLR 139
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKMN 198
N++ + +IEKLL + EL++ +++Q TCAI GDGL EG+ +L+ +I+K+RK+ + K
Sbjct: 140 NSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQQKKK 199
Query: 199 K 199
+
Sbjct: 200 R 200
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O00909 | ARF1_DICDI | No assigned EC number | 0.4421 | 0.8811 | 0.9780 | yes | N/A |
| Q3T0M9 | ARL4A_BOVIN | No assigned EC number | 0.5955 | 0.8811 | 0.89 | no | N/A |
| P36397 | ARF1_ARATH | No assigned EC number | 0.4521 | 0.8910 | 0.9944 | yes | N/A |
| P61214 | ARL4A_RAT | No assigned EC number | 0.5955 | 0.8811 | 0.89 | yes | N/A |
| P40617 | ARL4A_HUMAN | No assigned EC number | 0.5955 | 0.8811 | 0.89 | no | N/A |
| P61213 | ARL4A_MOUSE | No assigned EC number | 0.5955 | 0.8811 | 0.89 | no | N/A |
| Q10943 | ARF12_CAEEL | No assigned EC number | 0.4640 | 0.8564 | 0.9558 | yes | N/A |
| P0DH91 | ARF2B_ARATH | No assigned EC number | 0.4640 | 0.8564 | 0.9558 | yes | N/A |
| Q9LQC8 | ARF2A_ARATH | No assigned EC number | 0.4640 | 0.8564 | 0.9558 | yes | N/A |
| P36579 | ARF1_SCHPO | No assigned EC number | 0.4696 | 0.8564 | 0.9611 | yes | N/A |
| Q06396 | ARF1_ORYSJ | No assigned EC number | 0.4574 | 0.8910 | 0.9944 | yes | N/A |
| Q75A26 | ARF_ASHGO | No assigned EC number | 0.4640 | 0.8564 | 0.9558 | yes | N/A |
| P61208 | ARL4C_MOUSE | No assigned EC number | 0.6043 | 0.9009 | 0.9479 | yes | N/A |
| P0CM16 | ARF_CRYNJ | No assigned EC number | 0.4879 | 0.7920 | 0.8791 | yes | N/A |
| P56559 | ARL4C_HUMAN | No assigned EC number | 0.6043 | 0.9009 | 0.9479 | yes | N/A |
| P51823 | ARF2_ORYSJ | No assigned EC number | 0.4640 | 0.8564 | 0.9558 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 202 | |||
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 1e-100 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 6e-68 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 2e-67 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 4e-63 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 1e-59 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 2e-58 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 3e-58 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 7e-56 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 1e-55 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 2e-51 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 1e-50 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 1e-46 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 6e-44 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 3e-43 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 1e-38 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 2e-38 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 2e-38 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 4e-29 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 1e-28 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 4e-28 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 5e-25 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 9e-24 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-19 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 3e-19 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-17 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 7e-16 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 3e-15 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 5e-14 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 4e-12 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 4e-12 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 4e-12 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 1e-11 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 2e-11 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 2e-11 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 2e-11 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 8e-11 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 7e-09 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 1e-08 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 1e-08 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 2e-08 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 5e-08 | |
| cd00880 | 161 | cd00880, Era_like, E | 1e-07 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 1e-07 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 2e-07 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 3e-07 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 5e-07 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 5e-07 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 7e-07 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 1e-06 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 1e-06 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 1e-06 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 1e-06 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 2e-06 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 2e-06 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 2e-06 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 3e-06 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 4e-06 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 4e-06 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 5e-06 | |
| cd01870 | 175 | cd01870, RhoA_like, Ras homology family A (RhoA)-l | 6e-06 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 1e-05 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 2e-05 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 2e-05 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 2e-05 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 2e-05 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 3e-05 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 3e-05 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 4e-05 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 8e-05 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 9e-05 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 9e-05 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 1e-04 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 1e-04 | |
| cd04138 | 162 | cd04138, H_N_K_Ras_like, Ras GTPase family contain | 2e-04 | |
| smart00275 | 342 | smart00275, G_alpha, G protein alpha subunit | 2e-04 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 2e-04 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 3e-04 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 3e-04 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 5e-04 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 5e-04 | |
| cd00066 | 315 | cd00066, G-alpha, Alpha subunit of G proteins (gua | 5e-04 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 5e-04 | |
| cd04177 | 168 | cd04177, RSR1, RSR1/Bud1p family GTPase | 6e-04 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 8e-04 | |
| cd01881 | 167 | cd01881, Obg_like, Obg-like family of GTPases cons | 0.001 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 0.001 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 0.001 | |
| cd04140 | 165 | cd04140, ARHI_like, A Ras homolog member I (ARHI) | 0.001 | |
| pfam02421 | 190 | pfam02421, FeoB_N, Ferrous iron transport protein | 0.002 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 0.002 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 0.002 | |
| COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function | 0.002 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 0.003 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 287 bits (735), Expect = e-100
Identities = 113/178 (63%), Positives = 145/178 (81%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
S+HIVMLGLDSAGKTT LYRLKF++++NTVPT GFN EK+K +G KG+ F WDVGGQ
Sbjct: 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQ 62
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
EKLRPLWKSYTRCTDGI+FV+DS DVERMEE K EL K K ++N VP+L+LANKQDLP
Sbjct: 63 EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLP 122
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNK 196
NA+ + ++EKLL L+EL++ +++Q CAI G+GL EG+ +LY++ILK+RK+ + K
Sbjct: 123 NALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKMLRQQK 180
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 6e-68
Identities = 82/167 (49%), Positives = 112/167 (67%), Gaps = 6/167 (3%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ I++LGLD+AGKTT LY+LK + + T+PTIGFN E V K + F +WDVGGQ
Sbjct: 14 EMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVT-----YKNVKFTVWDVGGQ 68
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E LRPLW++Y TD +IFV+DS D +R+EE K EL + + + P+LILANKQDLP
Sbjct: 69 ESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLP 128
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
A+ +I +LLGL+EL + + IQ A+TG+GL EG++ L I
Sbjct: 129 GAMSEAEIRELLGLHELKDRP-WEIQGCSAVTGEGLDEGLDWLSNYI 174
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 2e-67
Identities = 83/164 (50%), Positives = 111/164 (67%), Gaps = 6/164 (3%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I+MLGLD AGKTT LY+LK + + T+PTIGFN E V+ K + F +WDVGGQ+K
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEY-----KNVKFTVWDVGGQDK 55
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+RPLWK Y TDG+IFV+DS+D ER+EE K EL K + + P+LILANKQDLP A
Sbjct: 56 IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGA 115
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQL 184
+ ++ +LLGL + ++IQ A+TGDGL EG++ L +
Sbjct: 116 LTESELIELLGLESIKG-RRWHIQPCSAVTGDGLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 4e-63
Identities = 80/162 (49%), Positives = 116/162 (71%), Gaps = 6/162 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+ K I+F +WDVGGQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQD 55
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
K+RPLW+ Y + T G+IFV+DS D ER+ E + EL + + ++ + +L+ ANKQDLPN
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
A+ ++ LGL+ L N + +YIQATCA +GDGL+EG++ L
Sbjct: 116 AMSAAEVTDKLGLHSLRNRN-WYIQATCATSGDGLYEGLDWL 156
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 1e-59
Identities = 76/168 (45%), Positives = 115/168 (68%), Gaps = 6/168 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
G+ + I+MLGLD+AGKTT LY+LK Q + T+PT+GFN E V K + F +WDV
Sbjct: 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT-----YKNVKFNVWDV 60
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GGQ+K+RPLW+ Y T G+IFV+DS D +R++E + EL + I + + + +L+ ANKQ
Sbjct: 61 GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQ 120
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183
DLP+A++ +I++ LGL + + +Y+Q +CA +GDGL+EG+ L
Sbjct: 121 DLPDAMKPHEIQEKLGLTRIRD-RNWYVQPSCATSGDGLYEGLTWLSS 167
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 2e-58
Identities = 68/164 (41%), Positives = 108/164 (65%), Gaps = 4/164 (2%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+++LGLDSAGK+T LY+LK + + T+PT+GFN E ++ + K ++ +WDVGGQEK
Sbjct: 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLE----KHLSLTVWDVGGQEK 56
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+R +WK Y TDG+++V+DS+D R++E + EL +KN VP+++LANKQDLP A
Sbjct: 57 MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA 116
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQL 184
+ ++I + L + + +Y+Q A+TG+GL E +L
Sbjct: 117 LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLASF 160
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 3e-58
Identities = 82/190 (43%), Positives = 124/190 (65%), Gaps = 8/190 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MG ++ F++L G V I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+
Sbjct: 1 MGLWLSSAFKSL--FGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVE- 57
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K + F +WDVGGQ+KLRPLW+ Y + T+G+IFV+DS D ER+ + + EL + +
Sbjct: 58 ----YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSE 113
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
++ + +L+ ANKQDLPNA+ ++ + LGL+ + + +YIQ CA T GL+EG++
Sbjct: 114 DELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRN-WYIQGCCATTAQGLYEGLDW 172
Query: 181 LYQLILKKRK 190
L I K +
Sbjct: 173 LSANIKKSMQ 182
|
Length = 182 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 7e-56
Identities = 78/166 (46%), Positives = 117/166 (70%), Gaps = 6/166 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
G+ + I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V K I+F +WDV
Sbjct: 10 GNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVT-----YKNISFTVWDV 64
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GGQ+K+RPLW+ Y T G+IFV+DS D +R++E + EL + + ++ + IL+ ANKQ
Sbjct: 65 GGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQ 124
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
DLP+A++ +I + LGL+ + + + +YIQ TCA +GDGL+EG+ L
Sbjct: 125 DLPDAMKAAEITEKLGLHSIRDRN-WYIQPTCATSGDGLYEGLTWL 169
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 1e-55
Identities = 84/188 (44%), Positives = 122/188 (64%), Gaps = 8/188 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MG + F L + I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+
Sbjct: 1 MGLSFTKLFSRL--FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE- 57
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K I+F +WDVGGQ+K+RPLW+ Y + T G+IFV+DS D +R+ E + EL + +
Sbjct: 58 ----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 113
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
++ + +L+ ANKQDLPNA+ +I LGL+ L H +YIQ+TCA +G+GL+EG++
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDW 172
Query: 181 LYQLILKK 188
L I K
Sbjct: 173 LSNNIANK 180
|
Length = 181 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 2e-51
Identities = 69/160 (43%), Positives = 100/160 (62%), Gaps = 6/160 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
I++LGLD AGKTT LYRL+ + + T+PTIGFN E V K + F +WD+GGQ +
Sbjct: 2 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVT-----YKNLKFQVWDLGGQTSI 56
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
RP W+ Y TD II+V+DSTD +R+ K EL ++ + + +L+ ANKQD+P A+
Sbjct: 57 RPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGAL 116
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
++ + LGL EL + + I T A G+GL EG++ L
Sbjct: 117 SEAEVAEKLGLSELKD-RTWQIFKTSATKGEGLDEGMDWL 155
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 1e-50
Identities = 71/157 (45%), Positives = 101/157 (64%), Gaps = 6/157 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++++GLD+AGKTT LY+ + ++T PTIG N E++ K I FL+WD+GGQE L
Sbjct: 18 VIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIV-----YKNIRFLMWDIGGQESL 72
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R W +Y TD +I VIDSTD ER+ K EL K + + D +L+LANKQDL A+
Sbjct: 73 RSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM 132
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178
+I + LGL + + H ++IQ CA+TG+GL EG+
Sbjct: 133 TPAEISESLGLTSIRD-HTWHIQGCCALTGEGLPEGL 168
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 1e-46
Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 6/172 (3%)
Query: 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKG 67
L+ S V I++LGLD+AGKTT L +L + + PT GFN + V+ G
Sbjct: 4 ILRKLKPSSRQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQAD-----G 58
Query: 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
+WD+GGQ K+RP W++Y TD +I+VIDS D +R EE EL++ ++ VP
Sbjct: 59 FKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVP 118
Query: 128 ILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179
+L+ ANKQDL A +++ + L L+++ + ++IQA A TG+GL EG+N
Sbjct: 119 VLVFANKQDLLTAAPAEEVAEALNLHDIRD-RSWHIQACSAKTGEGLQEGMN 169
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 6e-44
Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 8/165 (4%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ I+MLGLD+AGKTT L + + ++T+ PT+GFN + ++ G IWDVGGQ
Sbjct: 15 MRILMLGLDNAGKTTILKKFN-GEDISTISPTLGFNIKTLEYN-----GYKLNIWDVGGQ 68
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
+ LR W++Y TD +I+V+DS+D R+E+ K EL K + +LI ANKQDLP
Sbjct: 69 KSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLP 128
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183
A+ ++I ++L L + + H + I A+TG+ L +GI+ L
Sbjct: 129 GALSPEEIREVLELDSIKSHH-WRIFGCSAVTGENLLDGIDWLVD 172
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 3e-43
Identities = 71/160 (44%), Positives = 104/160 (65%), Gaps = 5/160 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V LGLD AGKTT L++LK D+++ +PTIGFN E V+ K + F IWDVGG+ KL
Sbjct: 2 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVE-----YKNLKFTIWDVGGKHKL 56
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
RPLWK Y T ++FVIDS+ +R+ E EL K + + + +LI ANKQD+ A+
Sbjct: 57 RPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 116
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
++++ +LL L++L +YIQ A +G GL+EG++ L
Sbjct: 117 SVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWL 156
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-38
Identities = 67/170 (39%), Positives = 96/170 (56%), Gaps = 14/170 (8%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT--------VPTIGFNCEKVKGQIGKCKGINFLIW 73
+++LGLD+AGKTT L + K N PT+G N + ++GK + + F W
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTI--EVGKAR-LMF--W 56
Query: 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
D+GGQE+LR LW Y + G+I+VIDSTD ER E K K I N VP+L+LAN
Sbjct: 57 DLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLAN 116
Query: 134 KQDLPNAIQIKQIEKLLGLY-ELNNMHLYYIQATCAITGDGLHEGINELY 182
KQDLP+A+ + +I+++ L +Q A+ G+G+ EGI L
Sbjct: 117 KQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLV 166
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-38
Identities = 69/165 (41%), Positives = 101/165 (61%), Gaps = 10/165 (6%)
Query: 21 HIVMLGLDSAGKTTALYRLK--FDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+I++LGLD++GKTT + +LK Q N VPT+GFN E K ++F +D+ GQ
Sbjct: 1 NILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKG-----NLSFTAFDMSGQ 55
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNND--NFNVPILILANKQD 136
K R LW+ Y + GIIFVIDS+D RM K EL + + D + +PIL ANK D
Sbjct: 56 GKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMD 115
Query: 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
LP+A+ +I +LL L + + ++I A+ A+TG+GL EG++ L
Sbjct: 116 LPDALTAVKITQLLCLENIKD-KPWHIFASSALTGEGLDEGVDWL 159
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-38
Identities = 62/152 (40%), Positives = 90/152 (59%), Gaps = 10/152 (6%)
Query: 8 FFENLQAS---GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGK 64
+F N+ +S IV LGLD+AGKTT L+ LK D+ VPT+ E++ IG
Sbjct: 5 WFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEEL--TIG- 61
Query: 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF 124
+ F +D+GG E+ R +WK Y DGI+F++D+ D ER +E K EL ++ N++
Sbjct: 62 --NVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEEL-DSLLNDEEL 118
Query: 125 -NVPILILANKQDLPNAIQIKQIEKLLGLYEL 155
NVPILIL NK D P A+ +++ + LGLY
Sbjct: 119 ANVPILILGNKIDKPGAVSEEELREALGLYGT 150
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-29
Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 8/150 (5%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I++LGLD AGKT+ L+ L ++ L + VPT GFN + Q + L ++GG +
Sbjct: 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAI---MELL--EIGGSQN 56
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
LR WK Y + G+IFV+DS D ER+ + EL + +++ ++P+++LANKQDLP A
Sbjct: 57 LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPP--DLPLVVLANKQDLPAA 114
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAIT 170
+++I K L L + + +Q T
Sbjct: 115 RSVQEIHKELELEPIARGRRWILQGTSLDD 144
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-28
Identities = 44/137 (32%), Positives = 80/137 (58%), Gaps = 6/137 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I ++GL ++GKTT + + Q+ +T+PT+GFN KV + +WD+GGQ +
Sbjct: 2 ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKG-----NVTIKVWDLGGQPR 56
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R +W+ Y R + I++V+D+ D E++E K EL ++ +P+L+L NK DLP A
Sbjct: 57 FRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116
Query: 141 IQIKQIEKLLGLYELNN 157
+ + ++ + + L + +
Sbjct: 117 LSVDELIEQMNLKSITD 133
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-28
Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 13/168 (7%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++ +GLD+AGKTT + L+ + PT+GF K ++ K I+D+GG
Sbjct: 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGF--TPTKLRLDKY---EVCIFDLGGGANF 56
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R +W +Y G++FV+DS+D +R++EVK L + +++ PIL+LANKQD NA+
Sbjct: 57 RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116
Query: 142 QIKQIEKLLGLYELNNMH--LYYIQATCAITGDG------LHEGINEL 181
+ + L L +L N + L +I+ AI G G + EG+ L
Sbjct: 117 LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 95.8 bits (238), Expect = 5e-25
Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
I+ LGLD+AGKTT L+ LK D+ PT E++ IG I F +D+GG ++
Sbjct: 20 ILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELA--IGN---IKFTTFDLGGHQQA 74
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R LWK Y +GI++++D+ D ER E K EL + + + VP LIL NK D P A
Sbjct: 75 RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134
Query: 142 QIKQIEKLLGLYE 154
++ LGL
Sbjct: 135 SEDELRYALGLTN 147
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 9e-24
Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 21/194 (10%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQI--GKCKGINFLIWDVGGQE 79
IV+LG GKTT L RL D++ P N + + I +WD GQE
Sbjct: 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGN--LDPAKTIEPYRRNIKLQLWDTAGQE 65
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+ R L Y R +GI+ V DST E +E+ E ++ ++ +VPIL++ NK DL +
Sbjct: 66 EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125
Query: 140 A--------------IQIKQIEKLLGLYELNNMHLYYIQATCAIT---GDGLHEGINELY 182
+ + + L E+ N L A + E + +L
Sbjct: 126 EQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185
Query: 183 QLILKKRKLQKTNK 196
+ I K + +
Sbjct: 186 EEIEKLVLKNELRQ 199
|
Length = 219 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-19
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT--VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
IV++G + GK+T L RL ++ T P N + K F + D GQE
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQE 62
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTD-VERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
+ + Y R + + V D V +EE+ + K I ++ VPI+++ NK DL
Sbjct: 63 DYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDLR 122
Query: 139 NA 140
+A
Sbjct: 123 DA 124
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 3e-19
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
IV++G DS GKT+ L R +++ N TIG + + ++ K + IWD GQE
Sbjct: 3 IVLIG-DSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDG-KKVKLQIWDTAGQE 60
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+ R + SY R G I V D T+ E E + + + +K N+PI+++ NK DL +
Sbjct: 61 RFRSITSSYYRGAHGAILVYDVTNRESFENLD-KWLNELKEYAPPNIPIILVGNKSDLED 119
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
Q+ E+ + N + + T A TG E ++E ++ + +
Sbjct: 120 ERQV-STEEAQQFAKENGLLFF---ETSAKTG----ENVDEAFESLAR 159
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-17
Identities = 37/174 (21%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Query: 23 VMLGLDSAGKTTALYRLKFDQYLNT----VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
V++G GK++ L L + T + ++ K + ++ D G
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPD--VYVKELDK-GKVKLVLVDTPGL 57
Query: 79 EKLRPLW-----KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
++ L + R D I+ V+DSTD E E+ K+ +++ ++ +PI+++ N
Sbjct: 58 DEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEG---IPIILVGN 114
Query: 134 KQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
K DL +++++ +L L ++ + ++ A TG EG++EL++ +++
Sbjct: 115 KIDLLEEREVEELLRLEELAKILGVPVF---EVSAKTG----EGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 7e-16
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+++LG +GKT +L + +TV +I N K K + + DV G EK
Sbjct: 2 TVLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLV--DVPGHEK 59
Query: 81 LRP-LWKSYTRCTDGIIFVIDSTDVER-MEEVKIEL--IKTIKNNDNFNVPILILANKQD 136
LR L + I+FV+DS ++ + +V L I T +PILI NKQD
Sbjct: 60 LRDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQD 119
Query: 137 LPNAIQIKQIEKLL 150
L A K+I++LL
Sbjct: 120 LFTAKPAKKIKELL 133
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-15
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 21/180 (11%)
Query: 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFL- 71
A+ IV++G AGKTT + R D+ L + KG+ ++F
Sbjct: 4 AANKMIETKIVVIGPVGAGKTTFV-RALSDKPLVITEADA-SSVSGKGKRPTTVAMDFGS 61
Query: 72 ----------IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNN 121
++ GQE+ + +W+ +R G I ++DS+ +I T +N
Sbjct: 62 IELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRN- 120
Query: 122 DNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
+P+++ NKQDL +A+ ++I + L +L + + I+ A G+G + ++ L
Sbjct: 121 ---PIPVVVAINKQDLFDALPPEKIREAL---KLELLSVPVIE-IDATEGEGARDQLDVL 173
|
Length = 187 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-14
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+V++G D GK++ L R +++ +PTIG + K K + IWD GQE
Sbjct: 2 LVLVG-DGGVGKSSLLIRFTQNKFPEEYIPTIGVD-FYTKTIEVDGKTVKLQIWDTAGQE 59
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQDL 137
+ R L Y R G + V D T + E VK +E I + NVPI+++ NK DL
Sbjct: 60 RFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE---NVPIVLVGNKCDL 116
Query: 138 PN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+ + ++ E L + L +++ T A T + + E EL + ILK
Sbjct: 117 EDQRVVSTEEGEAL-----AKELGLPFME-TSAKTNENVEEAFEELAREILK 162
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 4e-12
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 19/172 (11%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGGQ 78
+V+LG S GK++ + R +++ N TIG F + V + + F IWD GQ
Sbjct: 4 LVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVN--LDDT-TVKFEIWDTAGQ 60
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ R L Y R I V D T E E+ K +K ++ + N+ I + NK DL
Sbjct: 61 ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAK-SWVKELQEHGPPNIVIALAGNKADLE 119
Query: 139 N--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ + ++ ++ + L +++ T A TG E +NEL+ I +K
Sbjct: 120 SKRQVSTEEAQEY-----ADENGLLFME-TSAKTG----ENVNELFTEIARK 161
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 4e-12
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 19/172 (11%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+V+LG GKT+ + R KF++ T + + IG + I+ IWD GQ
Sbjct: 3 VVLLGEGRVGKTSLVLRYVENKFNE--KHESTTQASFFQKTVNIGGKR-IDLAIWDTAGQ 59
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ L Y R DG I V D TD + ++VK IK +K N+ ++I+ NK DL
Sbjct: 60 ERYHALGPIYYRDADGAILVYDITDADSFQKVKKW-IKELKQMRGNNISLVIVGNKIDLE 118
Query: 139 N--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ + E+ + T A TG +GI EL+ + K+
Sbjct: 119 RQRVVSKSEAEEYAKSVGAKHFE------TSAKTG----KGIEELFLSLAKR 160
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 4e-12
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
I+++G DS GK++ L R ++ TIG + ++VK QI
Sbjct: 3 IILIG-DSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQI-------- 53
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ R + SY R G + V D T+ E E ++ +K ++ + NV I++
Sbjct: 54 --WDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLE-NWLKELREYASPNVVIML 110
Query: 131 LANKQDLPNAIQIK 144
+ NK DL Q+
Sbjct: 111 VGNKSDLEEQRQVS 124
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-11
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKG-QIGKCKGINFLIWDVGG 77
I+++G GK++ L R FD+ + TIG + KVK + K + IWD G
Sbjct: 3 ILLIGDSGVGKSSLLLRFTDDTFDE--DLSSTIGVDF-KVKTVTVDG-KKVKLAIWDTAG 58
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R L SY R G+I V D T + + + L + + N + +++ NK D
Sbjct: 59 QERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDK 118
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
N +++ + G ++ +I+ T A T G+ + EL + I
Sbjct: 119 EN----REVTREEGQKFARKHNMLFIE-TSAKTRIGVQQAFEELVEKI 161
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-11
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 11/135 (8%)
Query: 19 SVHIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKCKGINF--LIW 73
S IV +G S GKT + R FD+ N TIG + E + ++ G+ F +W
Sbjct: 1 SKVIV-VGDLSVGKTCLINRFCKDVFDK--NYKATIGVDFEMERFEV---LGVPFSLQLW 54
Query: 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
D GQE+ + + +Y R II V D TDV +E + L +K ND +V + ++
Sbjct: 55 DTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGT 114
Query: 134 KQDLPNAIQIKQIEK 148
K+DL + Q +E+
Sbjct: 115 KKDLSSPAQYALMEQ 129
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-11
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 11/170 (6%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D + + + TIG + K++ K I IWD GQE+
Sbjct: 6 LLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDF-KIRTIELDGKKIKLQIWDTAGQER 64
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN- 139
R + SY R GII V D TD + E +K ++ I + + +V +++ NK D+
Sbjct: 65 FRTITTSYYRGAMGIILVYDITDEKSFENIK-NWMRNIDEHASEDVERMLVGNKCDMEEK 123
Query: 140 -AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ ++ E L Y + + T A + E L + ILKK
Sbjct: 124 RVVSKEEGEALAREYGIKFLE------TSAKANINVEEAFLTLAKDILKK 167
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-11
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 25/172 (14%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQ-YLNTVPTIG--FNCEKVKGQIGKC-----KGINFLIW 73
+V LG S GKT+ + R +D TIG F + K K + +W
Sbjct: 3 LVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDF--------LSKTMYVDDKTVRLQLW 54
Query: 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
D GQE+ R L SY R + + V D T+ + + + I +++ +V I+++ N
Sbjct: 55 DTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGN 113
Query: 134 KQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
K DL + Q+ E+ + NN +I+ T A G + +L++ I
Sbjct: 114 KTDLSDKRQVS-TEEGEKKAKENNAM--FIE-TSAKAGH----NVKQLFKKI 157
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-11
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG----FNCEKVKGQIGKCKGINFLIWDVG 76
++++G GK+ L R D Y + + TIG ++ G K + IWD
Sbjct: 5 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-----KTVKLQIWDTA 59
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
GQE+ R + SY R GII V D TD E VK L + I + NV L++ NK D
Sbjct: 60 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNKCD 118
Query: 137 LPNA 140
L +
Sbjct: 119 LTDK 122
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 7e-09
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G S GKT+ L+R D + + V T+G + KVK K I IWD GQE+
Sbjct: 4 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDF-KVKTVYRNDKRIKLQIWDTAGQER 62
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + +Y R G I + D T+ E V+ + IK N ++++ NK D+
Sbjct: 63 YRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVILVGNKCDM 118
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-08
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+V++G +GK++ L +L ++ + G ++ G+ IWD GG+E
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGL-LNIWDFGGRE 59
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN--NDNFNVPILILANKQ 135
+L+ + + D I+ V D TD E + EV LI + N +P++++ NK
Sbjct: 60 ELKFEHIIFMKWADAILLVYDLTDRESLNEVS-RLIAWLPNLRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-08
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 25 LGLDSAGKTTALYRL---KFD-QYLNTVPTIGFNCEKV-------KGQIGKCKGINFLIW 73
LG GKTT LYR KF+ +++ TV I F ++V G GK ++ +W
Sbjct: 10 LGDSGVGKTTFLYRYTDNKFNPKFITTV-GIDFREKRVVYNSQGPDGTSGKAFRVHLQLW 68
Query: 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
D GQE+ R L ++ R G + + D T + V+ + + + N I+++ N
Sbjct: 69 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVLIGN 128
Query: 134 KQDLPNAIQIK--QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
K DLP+ ++ Q +L Y + Y + T A TG + + + L LI+K+
Sbjct: 129 KADLPDQREVSERQARELADKYGIP-----YFE-TSAATGQNVEKAVETLLDLIMKR 179
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-08
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 21/126 (16%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLN----------TVPTIGFNCEKVKGQIGKCKGINFL 71
I+++G + GKT + R K + T+ T+ ++VK QI
Sbjct: 6 IILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQI--------- 56
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
WD GQE+ R + +SY R +G I D T E V I+ ++ NV +L++
Sbjct: 57 -WDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVP-HWIEEVEKYGASNVVLLLI 114
Query: 132 ANKQDL 137
NK DL
Sbjct: 115 GNKCDL 120
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 5e-08
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 5/169 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
IV++G GK+ L R +++ L + TIG Q+ + K + IWD GQE+
Sbjct: 15 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQER 73
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + +Y R G + V D T + + V+ ++ ++++ + N+ I++ NK DL N
Sbjct: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDL-NH 131
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGD-GLHEGINELYQLILKK 188
++ E L E + A A + + E+Y +I KK
Sbjct: 132 LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKK 180
|
Length = 216 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 24/172 (13%)
Query: 25 LGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG------- 77
G + GK++ L L P G + V+ + ++ D G
Sbjct: 3 FGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEGGL 62
Query: 78 -QEKLRPLWKSYTRCTDGIIFVIDST-DVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
+E++ + R D ++ V+DS E L + P+L++ NK
Sbjct: 63 GRERVEEARQVADR-ADLVLLVVDSDLTPVEEEAKLGLLRER-------GKPVLLVLNKI 114
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
DL + +++ + L L ++ + A A+ G EGI+EL + I +
Sbjct: 115 DLVPESEEEELLRERKLELLPDLP---VIAVSALPG----EGIDELRKKIAE 159
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 1e-07
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
S I+++G GK++ L + PTIG + K+K K + IWD GQ
Sbjct: 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDF-KIKQLTVGGKRLKLTIWDTAGQ 72
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVE 105
E+ R L SY R GII V D T E
Sbjct: 73 ERFRTLTSSYYRNAQGIILVYDVTRRE 99
|
Length = 211 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-07
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 23/127 (18%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
IV++G DS GK+ L R +++ L++ TIG + + +K QI
Sbjct: 6 IVLIG-DSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQI-------- 56
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ R + +Y R G + V D T E V+ +K ++++ + N+ I++
Sbjct: 57 --WDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVE-RWLKELRDHADSNIVIML 113
Query: 131 LANKQDL 137
+ NK DL
Sbjct: 114 VGNKSDL 120
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 48 VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI-----DST 102
V T G K KG+ F ++DVGGQ R W IIFV+ D
Sbjct: 153 VKTTGIIETKFD-----FKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQV 207
Query: 103 DVE-----RMEEVKIELIKTIKNNDNF-NVPILILANKQDL 137
E R+EE + L + I N+ F N PI++ NK+DL
Sbjct: 208 LYEDDSTNRLEE-SLNLFEEICNSPWFKNTPIILFLNKKDL 247
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-07
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
SS +++ GL +GKT+ L TV + + KG +F + D
Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQE---PSAAYKYMLHKGFSFTLIDFP 57
Query: 77 GQEKLRPLWKS---YTRCTDGIIFVIDST-DVERMEEV-----KIELIKTIKNNDNFNVP 127
G KLR + GI+FV+DST + + + +I I + N +
Sbjct: 58 GHVKLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKN---GID 114
Query: 128 ILILANKQDLPNAIQIKQIEKLL 150
ILI NKQ+ A K+I++ L
Sbjct: 115 ILIACNKQESFTARPPKKIKQAL 137
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-07
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 25/176 (14%)
Query: 23 VMLGLDSAGKTTALYRLKFDQYLNTVP-TIG---------FNCEKVKGQIGKCKGINFLI 72
+++G GK+ L++ +++ P TIG N +K+K QI
Sbjct: 6 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQI---------- 55
Query: 73 WDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
WD GQE+ R + +SY R G + V D T + L +N N N I ++
Sbjct: 56 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA-RNLTNPNTVIFLIG 114
Query: 133 NKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
NK DL + E+ + N L +++ + A TG+ + + E + I +
Sbjct: 115 NKADLEAQRDVT-YEEAKQFADENG--LLFLECS-AKTGENVEDAFLETAKKIYQN 166
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 7e-07
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLN--TVPTIG--FNCEKVKGQIGKCKGINFLIWDV 75
V +VMLG +S GKT+ + R ++L TIG F +++ +G+ + + IWD
Sbjct: 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRM--VVGE-RVVTLGIWDT 57
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
G E+ + + Y R I D TD E K +K ++N + + I + K
Sbjct: 58 AGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKF-WVKELQNLEE-HCKIYLCGTKS 115
Query: 136 DL 137
DL
Sbjct: 116 DL 117
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-06
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 22/127 (17%)
Query: 22 IVMLGLDSAGKTTALYRLKFD----QYLNTV------PTIGFNCEKVKGQIGKCKGINFL 71
++++G GK++ L R + Y+ T+ T+ N E+VK QI
Sbjct: 9 LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQI--------- 59
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
WD GQE+ R + +Y R T G+I V D T+ E VK ++ I+ N + +V +++
Sbjct: 60 -WDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVK-RWLQEIEQNCD-DVCKVLV 116
Query: 132 ANKQDLP 138
NK D P
Sbjct: 117 GNKNDDP 123
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-06
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
Query: 23 VMLGLDSAGKTTALYRL---KFDQYLNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+++G GK+ L++ KF Q ++ TIG F V +G K + IWD G
Sbjct: 4 LIIGSAGTGKSCLLHQFIENKFKQ--DSNHTIGVEFGSRVVN--VGG-KSVKLQIWDTAG 58
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIEL--IKTIKNNDNFNVPILILANKQ 135
QE+ R + +SY R G + V D T E + L +T+ + D + I+++ NK+
Sbjct: 59 QERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPD---IVIILVGNKK 115
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176
DL + ++ +E E N + T A+TG+ + E
Sbjct: 116 DLEDDREVTFLEASRFAQE-NGLLFL---ETSALTGENVEE 152
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-06
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125
K I IWD GQE R + +SY R G + V D T E + L + + + N N
Sbjct: 51 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWL-EDARQHSNSN 109
Query: 126 VPILILANKQDLPNAIQIKQIE 147
+ I+++ NK DL + ++ E
Sbjct: 110 MTIMLIGNKCDLESRREVSYEE 131
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-06
Identities = 45/160 (28%), Positives = 63/160 (39%), Gaps = 27/160 (16%)
Query: 11 NLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGIN 69
N Q S +V++G GKTT + R ++ PTIG + K I
Sbjct: 5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IR 63
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN------ 123
F WD GQEK L Y I + D T R+ T KN
Sbjct: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT--ARL---------TYKNVPTWHRDLC 112
Query: 124 ---FNVPILILANKQDLPN-AIQIKQI----EKLLGLYEL 155
N+PI++ NK D+ N ++ KQ+ +K L YE+
Sbjct: 113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 152
|
Length = 219 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVG 76
++++G + GK++ L R +F + + PT+G F ++ + G I +WD
Sbjct: 5 LIVIGDSTVGKSSLLKRFTEGRFAEVSD--PTVGVDFFSRLIEIEPGV--RIKLQLWDTA 60
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
GQE+ R + +SY R + G++ V D T+ E E V L + + +++ +K D
Sbjct: 61 GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120
Query: 137 LPNAIQIKQIE 147
L + Q+ + E
Sbjct: 121 LESQRQVTREE 131
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-06
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG--FNCE-KVKGQIGKCKGINFLIWDVGG 77
+V+LG GK+ R +++ PTI + + V G+ I D G
Sbjct: 2 LVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGET-----YTLDILDTAG 56
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQ 135
QE+ + Y R DG I V T E EE+K E I +K+ + +VPI+++ NK
Sbjct: 57 QEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKE--DVPIVLVGNKC 114
Query: 136 DLPN 139
DL N
Sbjct: 115 DLEN 118
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-06
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 31/138 (22%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIG---------FNCEKVKGQIGKCKGIN 69
I+++G + GKT YR +F + T TIG + E++K Q+
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPE--RTEATIGVDFRERTVEIDGERIKVQL------- 55
Query: 70 FLIWDVGGQEKLRPLWKS----YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125
WD GQE+ R KS Y R ++FV D T++ + + + +++
Sbjct: 56 ---WDTAGQERFR---KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE 109
Query: 126 VPILILANKQDLPNAIQI 143
VP +++ NK DL IQ+
Sbjct: 110 VPRILVGNKCDLREQIQV 127
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-06
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + + Y R +G + V TD EEV I +K+ D F P++
Sbjct: 54 ILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEF--PMI 111
Query: 130 ILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166
++ NK DL + Q+ + E G + + YI+ +
Sbjct: 112 LVGNKADLEHQRQVSREE---GQELARQLKIPYIETS 145
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-06
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
IV+LG ++GKT+ + R F + TIG + + + + +WD+GGQ
Sbjct: 3 IVVLGDGASGKTSLIRRFAQEGFGKSYKQ--TIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP--ILILANKQD 136
+ + Y + V D T+ + E ++ L K N+ ++++ NK D
Sbjct: 61 QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120
Query: 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172
L + Q+ EK + N+M ++ A TGD
Sbjct: 121 LEHNRQVT-AEKHARFAQENDMESIFVSAK---TGD 152
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 4e-06
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 22/126 (17%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN----CEKVKGQIGKCKGINFLIWDVG 76
IV++G + GKT L +++ VPT+ F+ V G+ +N +WD
Sbjct: 3 IVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQ-----VNLGLWDTA 56
Query: 77 GQE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + F +DS E VK + IK+ NVPI+++
Sbjct: 57 GQEEYDRLRPL--SYPQ-TDVFLLCFSVDSPS--SFENVKTKWYPEIKHY-CPNVPIILV 110
Query: 132 ANKQDL 137
K DL
Sbjct: 111 GTKIDL 116
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-06
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVP-TIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GKT+ + R D + T+G + K+K + K I IWD GQE+
Sbjct: 3 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF-KIKTVELRGKKIRLQIWDTAGQER 61
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN- 139
+ +Y R GII V D T E +++ + +K I + + +L++ NK D
Sbjct: 62 FNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD 120
Query: 140 -AIQIKQIEKL 149
I +Q EK
Sbjct: 121 REITRQQGEKF 131
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-06
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 18/126 (14%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE- 79
+V++G + GKT L DQ+ VPT+ N V K + +WD GQE
Sbjct: 4 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN--YVADIEVDGKQVELALWDTAGQED 61
Query: 80 --KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNF--NVPILILAN 133
+LRPL SY TD I+ F IDS D +E + + +K+ F NVPI+++ N
Sbjct: 62 YDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKH---FCPNVPIILVGN 113
Query: 134 KQDLPN 139
K+DL N
Sbjct: 114 KKDLRN 119
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 1e-05
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 92 TDGIIFVIDSTD----VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIE 147
T ++ VID + VE E ++ EL N P +++ NK DL +A + +
Sbjct: 79 TRVLLHVIDLSGEDDPVEDYETIRNELEA--YNPGLAEKPRIVVLNKIDLLDAEERFEKL 136
Query: 148 KLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
K L L EL ++ I A+TG+GL E + +L +L+
Sbjct: 137 KEL-LKELKGKKVFPI---SALTGEGLDELLKKLAKLL 170
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++M+G GK+ + +D+++ PT + K G+ +N L D GQE
Sbjct: 3 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNIL--DTAGQED 60
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQDLP 138
+ +Y R +G + V TD+E + E I +K +D NVP+L++ NK DL
Sbjct: 61 YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDD--NVPLLLVGNKCDLE 118
Query: 139 NAIQIKQIE 147
+ Q+ E
Sbjct: 119 DKRQVSVEE 127
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 21/134 (15%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIG---FNCE-KVKGQIGKCKGIN 69
SS + +++LG GK++ + R KFD TIG N + +V G +
Sbjct: 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEVDGHF-----VT 55
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIF---VIDSTDVERMEEVKIELI--KTIKNNDNF 124
IWD GQE+ R L + R +D + V DS + + K E I +K ++F
Sbjct: 56 LQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 115
Query: 125 NVPILILANKQDLP 138
P +IL NK D+P
Sbjct: 116 --PFVILGNKIDIP 127
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-05
Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 31/157 (19%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVK--GQIGKCKGINFLIWDVGGQ 78
+V++G GKTT + R ++ V T+G + GK I F +WD GQ
Sbjct: 3 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGK---IRFNVWDTAGQ 59
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN---------FNVPIL 129
EK L Y I + D T T KN N N+PI+
Sbjct: 60 EKFGGLRDGYYIQGQCAIIMFDVTSRV-----------TYKNVPNWHRDLVRVCENIPIV 108
Query: 130 ILANKQDLPNA-IQIKQIE----KLLGLYELNNMHLY 161
+ NK D+ + ++ KQI K L YE++ Y
Sbjct: 109 LCGNKVDIKDRKVKPKQITFHRKKNLQYYEISAKSNY 145
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-05
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125
K I IWD GQE R + +SY R G + V D T E + ++ + + N N
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANAN 111
Query: 126 VPILILANKQDL 137
+ I+++ NK DL
Sbjct: 112 MTIMLIGNKCDL 123
|
Length = 210 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-05
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 7/153 (4%)
Query: 25 LGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83
+G GKT+ +L +++ + T G N + K + K I +WD GGQE
Sbjct: 7 VGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQEIYHA 66
Query: 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI 143
+ + + V D + + V L + IK P++++ D I
Sbjct: 67 THQFFLTSRSLYLLVFDLRTGDEVSRVPYWL-RQIKAFGG-VSPVILVGTHIDESCDEDI 124
Query: 144 KQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176
+ K L ++ + G G+ E
Sbjct: 125 LK--KALNKKFPAIINDIHF--VSCKNGKGIAE 153
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 3e-05
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
+ +WD GQE+ R L SY R + I V D T+ + E + I+ I N +V
Sbjct: 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVI 87
Query: 128 ILILANKQDLPNAIQIKQIEKLLGLYELNNM 158
I ++ NK DL + ++ E + E N M
Sbjct: 88 IALVGNKTDLGDLRKVTYEEGMQKAQEYNTM 118
|
Length = 176 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-05
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V TD + EE+K E I +K+ D+ VPI+
Sbjct: 52 ILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDD--VPIV 109
Query: 130 ILANKQDLPNAIQIKQIE 147
++ NK DL + + E
Sbjct: 110 LVGNKCDLESERVVSTEE 127
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-05
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 27/139 (19%)
Query: 21 HIVMLGLDSA-GKTTALYRLKFDQYL--NTVPTIGFNCE---------KVKGQIGKCKGI 68
VML DS GKT L R K +L + + T+G KVK QI
Sbjct: 1 FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQI------ 54
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIEL--IKTIKNNDNFNV 126
WD GQE+ R + +Y R ++ + D T+ + ++ L I +D V
Sbjct: 55 ----WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSD---V 107
Query: 127 PILILANKQDLPNAIQIKQ 145
I++L NK D+ +K+
Sbjct: 108 VIMLLGNKADMSGERVVKR 126
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 9e-05
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V TD + EE+ E I +K+ D+ VPI+
Sbjct: 54 ILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDD--VPIV 111
Query: 130 ILANKQDLPN 139
++ NK DL N
Sbjct: 112 LVGNKCDLEN 121
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 9e-05
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 68 INFLIWDVGGQE--KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDN 123
++ I D GQ+ + + R DG + V TD + V ++LI+ IK D
Sbjct: 47 VSLEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDG 106
Query: 124 FNVPILILANKQDLPNAIQI 143
+P++++ NK DL ++ Q+
Sbjct: 107 -EIPVILVGNKADLLHSRQV 125
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
IV++G GKT L R +F Q L TIG + +I K I IWD GQ
Sbjct: 10 IVLIGNAGVGKT-CLVR-RFTQGLFPPGQGATIGVDFMIKTVEIKGEK-IKLQIWDTAGQ 66
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ R + +SY R + +I D T E + E ++ I+ N V +++ NK DL
Sbjct: 67 ERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLA 125
Query: 139 NAIQIKQ 145
++ Q
Sbjct: 126 ERREVSQ 132
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 1e-04
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
IVMLG GK+ + F Y + PTI + K + +I + I D GQ
Sbjct: 5 IVMLGAGGVGKSAVTMQFISHSFPDYHD--PTIE-DAYKTQARIDN-EPALLDILDTAGQ 60
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQD 136
+ + Y RC +G I TD +E ELI ++ + ++P++++ NK D
Sbjct: 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTE--DIPLVLVGNKVD 118
Query: 137 LPNAIQIKQIEKLLGL 152
L Q +Q+ G
Sbjct: 119 LE---QQRQVTTEEGR 131
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + E++ E IK +K++D+ VP++
Sbjct: 53 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDD--VPMV 110
Query: 130 ILANKQDLPN 139
++ NK DL
Sbjct: 111 LVGNKCDLAA 120
|
H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 18/86 (20%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDG---IIFVI-----DSTDVE-----RMEEVKI 112
K + F ++DVGGQ R W C D IIF + D E RM+E +
Sbjct: 182 KKLFFRMFDVGGQRSERKKW---IHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQE-SL 237
Query: 113 ELIKTIKNNDNF-NVPILILANKQDL 137
L ++I N+ F N I++ NK DL
Sbjct: 238 NLFESICNSRWFANTSIILFLNKIDL 263
|
Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 28/129 (21%)
Query: 22 IVMLGLDSAGKTTALYRL---KF-DQYLNTVPTIGFN----CEKVKGQIGKCKGINFLIW 73
+V++G + GKT+ LY +F ++Y PT+ N C V G K + +W
Sbjct: 4 LVIVGDGACGKTSLLYVFTLGEFPEEY---HPTVFENYVTDCR-VDG-----KPVQLALW 54
Query: 74 DVGGQ---EKLRPLWKSYTRCTDGII-FVIDSTD-VERMEEVKIELIKTIKNNDNFNVPI 128
D GQ E+LRPL SY++ +I F ID+ D +E + IE ++ NVP+
Sbjct: 55 DTAGQEEYERLRPL--SYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP----NVPV 108
Query: 129 LILANKQDL 137
+++ K+DL
Sbjct: 109 ILVGLKKDL 117
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
I D GQE+ + Y R G + V T EE+ + ++ D VP++++
Sbjct: 57 ILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILV 116
Query: 132 ANKQDLPNAIQIKQIE 147
NK DL + Q+ E
Sbjct: 117 GNKCDLDSERQVSTGE 132
|
Length = 189 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 3e-04
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 24/138 (17%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIGFN---CEKVKGQIGKCKGINFLIWDVG 76
+V++G D A GKT L + + + VPT+ N +V G+ + +WD
Sbjct: 1 LVVVG-DGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKP-----VELGLWDTA 54
Query: 77 GQE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY TD + F +DS E VK + +K+ NVPI+++
Sbjct: 55 GQEDYDRLRPL--SYPD-TDVFLICFSVDSPA--SFENVKEKWYPEVKHFCP-NVPIILV 108
Query: 132 ANKQDLPNAIQIKQIEKL 149
K DL N +E+L
Sbjct: 109 GTKLDLRN--DKSTLEEL 124
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 5e-04
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG 151
TD + V+D+ E ++ELI+ +K +P +++ NK DL + +
Sbjct: 86 TDLALLVVDAGV--GPGEYELELIEELKER---KIPYIVVINKIDLGEESAELEKLE--- 137
Query: 152 LYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ + ++ A+TG EGI+EL + I++
Sbjct: 138 --KKFGLPPIFV---SALTG----EGIDELKEAIIEL 165
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 5e-04
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-----IKQ 145
TD I V+ + + V + I+ I + NVPI++ NK D P + +K
Sbjct: 72 VTDIAILVVAA-----DDGVMPQTIEAINHAKAANVPIIVAINKIDKPYGTEADPERVKN 126
Query: 146 IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186
LGL I A TG EGI++L + IL
Sbjct: 127 ELSELGLVGEEWGGDVSIVPISAKTG----EGIDDLLEAIL 163
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 5e-04
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 25/105 (23%)
Query: 48 VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG---IIFVI----- 99
V T G K + F ++DVGGQ R W C + IIFV+
Sbjct: 146 VKTTGIIETDFS-----IKNLKFRMFDVGGQRSERKKW---IHCFEDVTAIIFVVALSEY 197
Query: 100 DSTDVE-----RMEEVKIELIKTIKNNDNF-NVP-ILILANKQDL 137
D VE RM+E ++L +I N+ F N IL L NK+DL
Sbjct: 198 DQVLVEDESVNRMQE-SLKLFDSICNSRWFANTSIILFL-NKKDL 240
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 20 VHIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
+ I +LG GKT+ + + +FD+ + T+G N + I I F IWD+G
Sbjct: 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE--EYIQTLGVNFMEKTISIRG-TEITFSIWDLG 57
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
GQ + + + I+F+ D T + +K E + + + +PIL+
Sbjct: 58 GQREFINMLPLVCKDAVAILFMFDLTRKSTLNSIK-EWYRQARGFNKTAIPILV 110
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 6e-04
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
IV+LG GK+ + + ++ + PTI + K + G+ + I D
Sbjct: 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQ-----CDLEILDTA 57
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPILILANK 134
G E+ + + Y + G + V T + E+ E + IK++DN VP++++ NK
Sbjct: 58 GTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDN--VPMVLVGNK 115
Query: 135 QDLPNAIQI 143
DL + Q+
Sbjct: 116 ADLEDDRQV 124
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 8e-04
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+ +V+LG + GKT+ L+R ++ +TV T+G F + Q G N IWD G
Sbjct: 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLK----QWGP---YNISIWDTAG 53
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
+E+ L Y R +I D ++V+ +EE++ + + + N + ++ NK DL
Sbjct: 54 REQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFL-GLTDTANEDCLFAVVGNKLDL 112
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 90 RCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNF--NVPILILANKQDLPNAIQIKQ 145
+D I+ VID+++ + ++ L + + + F N P +I+ANK D+ + +K+
Sbjct: 74 YRSDLILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLKNKPEMIVANKIDMASENNLKR 133
Query: 146 IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
++ + T A+T GL I + +L+
Sbjct: 134 LKL------DKLKRGIPVVPTSALTRLGLDRVIRTIRKLL 167
|
The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.001
Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCK-GINFLIWDVGG 77
+ ++++G + GK++ + R + TIG + + + + + + ++WD G
Sbjct: 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ + K+Y R I V +TD E E IE K + ++P++++ K DL
Sbjct: 61 QEEFDAITKAYYRGAQACILVFSTTDRESFE--AIESWKEKVEAECGDIPMVLVQTKIDL 118
Query: 138 PN--AIQIKQIEKL 149
+ I ++ E L
Sbjct: 119 LDQAVITNEEAEAL 132
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.001
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 20/153 (13%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQY----LNTVP-TIGFNCEKVKGQIGKCKGINFLIWD 74
V I++LG + GK+ + R D Y L+T T+ + K +G K I WD
Sbjct: 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEG-----KTILVDFWD 55
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF--NVPILILA 132
GQE+ + + SY I V DV R K L K + + +P +++A
Sbjct: 56 TAGQERFQTMHASYYHKAHACILVF---DVTRKITYK-NLSKWYEELREYRPEIPCIVVA 111
Query: 133 NKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165
NK DL +K E +N+ LYY+ A
Sbjct: 112 NKIDL----DPSVTQKKFNFAEKHNLPLYYVSA 140
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI) | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.001
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKC-KGINFL-IWDVGGQ 78
+V+ G GK++ + R + + +PTI E Q+ C K I L I D G
Sbjct: 4 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTI----EDTYRQVISCSKSICTLQITDTTGS 59
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQD 136
+ + + I V T + +EE+K ELI IK N+ +PI+++ NK D
Sbjct: 60 HQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCD 119
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.002
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 20/105 (19%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA----IQIKQIEK 148
D II V+D+T++ER + ++L++ +P+++ N D I IK++ +
Sbjct: 80 DVIINVVDATNLERNLYLTLQLLE-------LGIPVVVALNMMDEAEKKGIKIDIKKLSE 132
Query: 149 LLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
LLG+ + T A G+G+ E + + ++ K
Sbjct: 133 LLGV---------PVVPTSARKGEGIDELKDAIIEVAEGKVPPAP 168
|
Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.002
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 25/97 (25%)
Query: 93 DGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG 151
D ++ V+D+++ E+ +I E +K + P++++ NK DL I +++
Sbjct: 296 DLVLLVLDASEPLTEEDDEILEELK--------DKPVIVVLNKADLTGEIDLEEENGKPV 347
Query: 152 LYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ A TG EGI+EL + I +
Sbjct: 348 I------------RISAKTG----EGIDELREAIKEL 368
|
Length = 449 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 37.3 bits (86), Expect = 0.002
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 7/167 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GKT L R +++ ++ + TIG + + ++ K + IWD GQE+
Sbjct: 3 LLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIK-VRIQIWDTAGQER 61
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+ + K Y R GI V D + ER + ++ + + V +++ NK D
Sbjct: 62 YQTITKQYYRRAQGIFLVYDISS-ERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
Q+ E+ L + M + T A T + E L +L+L+
Sbjct: 121 RQVGD-EQGNKLAKEYGMDFF---ETSACTNKNIKESFTRLTELVLQ 163
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.002
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 19/95 (20%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL 152
D ++FV+D++ ++ + LI+ + PI+++ NK DL + I+++ + G
Sbjct: 298 DLVLFVLDASQPL--DKEDLALIELLPKK----KPIIVVLNKADLVSKIELESEKLANG- 350
Query: 153 YELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
I + A TG EG++ L + I +
Sbjct: 351 --------DAIISISAKTG----EGLDALREAIKQ 373
|
Length = 454 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.003
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEV---KIELIKTIKNNDNFNVPI 128
+WD+ GQE+ + + Y + G I V D T E V K +L + + +P
Sbjct: 54 LWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPA 113
Query: 129 LILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
L+LANK DL ++ + + + + N + + T A + E + L + ILK
Sbjct: 114 LLLANKCDLKKE-RLAKDPEQMDQFCKENGFIGWF-ETSAKENINIEEAMRFLVKNILKN 171
Query: 189 RK 190
K
Sbjct: 172 DK 173
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 202 | |||
| KOG0084|consensus | 205 | 100.0 | ||
| KOG0092|consensus | 200 | 100.0 | ||
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| KOG0094|consensus | 221 | 100.0 | ||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0080|consensus | 209 | 100.0 | ||
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0078|consensus | 207 | 100.0 | ||
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| KOG0394|consensus | 210 | 100.0 | ||
| KOG0098|consensus | 216 | 100.0 | ||
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| KOG0079|consensus | 198 | 100.0 | ||
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| KOG0087|consensus | 222 | 100.0 | ||
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 100.0 | |
| KOG0086|consensus | 214 | 100.0 | ||
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| KOG0093|consensus | 193 | 100.0 | ||
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 100.0 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| KOG0073|consensus | 185 | 100.0 | ||
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 100.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 100.0 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 100.0 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 100.0 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 100.0 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 100.0 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 100.0 | |
| KOG0095|consensus | 213 | 100.0 | ||
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 100.0 | |
| PLN03118 | 211 | Rab family protein; Provisional | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 100.0 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 100.0 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 100.0 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 100.0 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 100.0 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 100.0 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 100.0 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 100.0 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.98 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.98 | |
| KOG0091|consensus | 213 | 99.98 | ||
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.98 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.98 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.98 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.98 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.98 | |
| KOG0070|consensus | 181 | 99.97 | ||
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.97 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.97 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.97 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.97 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.97 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.97 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.97 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.97 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.97 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| KOG0081|consensus | 219 | 99.97 | ||
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.97 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.97 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.97 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.97 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.97 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.97 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.97 | |
| KOG0395|consensus | 196 | 99.97 | ||
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.97 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.97 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.96 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.96 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.96 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.96 | |
| KOG0071|consensus | 180 | 99.96 | ||
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.96 | |
| KOG0083|consensus | 192 | 99.96 | ||
| KOG0088|consensus | 218 | 99.96 | ||
| KOG0097|consensus | 215 | 99.96 | ||
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.96 | |
| KOG0075|consensus | 186 | 99.95 | ||
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.95 | |
| KOG4252|consensus | 246 | 99.94 | ||
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.94 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.94 | |
| KOG0393|consensus | 198 | 99.94 | ||
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.94 | |
| KOG0072|consensus | 182 | 99.94 | ||
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.94 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.93 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.93 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.93 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.93 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.93 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.93 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.93 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.93 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.93 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.93 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.92 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.92 | |
| PTZ00099 | 176 | rab6; Provisional | 99.92 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.92 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.92 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.92 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.92 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.92 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.92 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.92 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.92 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.92 | |
| KOG0076|consensus | 197 | 99.92 | ||
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.92 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.92 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.91 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.91 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.91 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.91 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.91 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.91 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.91 | |
| KOG0074|consensus | 185 | 99.91 | ||
| KOG1673|consensus | 205 | 99.91 | ||
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.9 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.9 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.9 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.9 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.89 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.89 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.89 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.89 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.89 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.89 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.89 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.89 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.89 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.88 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.88 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.88 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.88 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.88 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.88 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.88 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.88 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.87 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.87 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.86 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.86 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.86 | |
| KOG3883|consensus | 198 | 99.86 | ||
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.86 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.85 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.85 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.85 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.85 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.85 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.85 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.84 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.84 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.84 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.84 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.84 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.83 | |
| KOG4423|consensus | 229 | 99.83 | ||
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.83 | |
| KOG0096|consensus | 216 | 99.83 | ||
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.82 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.82 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.82 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.82 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.82 | |
| KOG1707|consensus | 625 | 99.81 | ||
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.81 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.8 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.8 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.8 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.8 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.79 | |
| KOG0077|consensus | 193 | 99.79 | ||
| KOG1423|consensus | 379 | 99.79 | ||
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.79 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.79 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.78 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.77 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.77 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.77 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.76 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.76 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.76 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.76 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.76 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.75 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.75 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.75 | |
| KOG1191|consensus | 531 | 99.74 | ||
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.74 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.74 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.74 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.74 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.74 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.73 | |
| KOG1489|consensus | 366 | 99.73 | ||
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.73 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.73 | |
| KOG0462|consensus | 650 | 99.71 | ||
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.71 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.71 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.7 | |
| KOG0090|consensus | 238 | 99.7 | ||
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.7 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.7 | |
| KOG1145|consensus | 683 | 99.69 | ||
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.69 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.68 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.68 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.67 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.66 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.66 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.66 | |
| KOG1532|consensus | 366 | 99.65 | ||
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.64 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.64 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.63 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.62 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.62 | |
| KOG1490|consensus | 620 | 99.61 | ||
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.6 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.6 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.59 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.59 | |
| PRK13768 | 253 | GTPase; Provisional | 99.59 | |
| KOG3905|consensus | 473 | 99.58 | ||
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.57 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.56 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.56 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.53 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.51 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.51 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.5 | |
| KOG0458|consensus | 603 | 99.49 | ||
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.49 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.49 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.49 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.48 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.47 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.47 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.47 | |
| KOG0082|consensus | 354 | 99.46 | ||
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.44 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.43 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.43 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.4 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.4 | |
| KOG3886|consensus | 295 | 99.4 | ||
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.4 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.39 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.39 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.37 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.36 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.36 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.35 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.34 | |
| KOG1144|consensus | 1064 | 99.3 | ||
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.29 | |
| KOG0461|consensus | 522 | 99.29 | ||
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.29 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.28 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.26 | |
| KOG0468|consensus | 971 | 99.24 | ||
| KOG0705|consensus | 749 | 99.24 | ||
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.22 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.21 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.18 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.17 | |
| KOG0410|consensus | 410 | 99.14 | ||
| KOG1707|consensus | 625 | 99.13 | ||
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.13 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.12 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.08 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.07 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.07 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.05 | |
| KOG2486|consensus | 320 | 99.05 | ||
| KOG1491|consensus | 391 | 99.05 | ||
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.03 | |
| KOG0085|consensus | 359 | 99.01 | ||
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.01 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.0 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.98 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.97 | |
| KOG2655|consensus | 366 | 98.97 | ||
| KOG3887|consensus | 347 | 98.96 | ||
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.95 | |
| KOG1954|consensus | 532 | 98.94 | ||
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.93 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.9 | |
| KOG1486|consensus | 364 | 98.9 | ||
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.89 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.87 | |
| KOG0460|consensus | 449 | 98.85 | ||
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.85 | |
| KOG0467|consensus | 887 | 98.84 | ||
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.83 | |
| KOG0447|consensus | 980 | 98.83 | ||
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.83 | |
| KOG1143|consensus | 591 | 98.83 | ||
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.83 | |
| KOG0099|consensus | 379 | 98.82 | ||
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.79 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.78 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.75 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.75 | |
| KOG1547|consensus | 336 | 98.75 | ||
| KOG0466|consensus | 466 | 98.73 | ||
| KOG0448|consensus | 749 | 98.71 | ||
| KOG3859|consensus | 406 | 98.71 | ||
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.71 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.68 | |
| KOG1487|consensus | 358 | 98.67 | ||
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.66 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.66 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.64 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.63 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.62 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.59 | |
| KOG0464|consensus | 753 | 98.58 | ||
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.57 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.56 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.55 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.54 | |
| KOG0465|consensus | 721 | 98.51 | ||
| KOG0459|consensus | 501 | 98.51 | ||
| KOG0463|consensus | 641 | 98.48 | ||
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.48 | |
| KOG1424|consensus | 562 | 98.45 | ||
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.45 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.43 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.41 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.38 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.38 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.35 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.35 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.35 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.34 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.27 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.26 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.18 | |
| KOG2484|consensus | 435 | 98.1 | ||
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.1 | |
| KOG1534|consensus | 273 | 98.09 | ||
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.08 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.07 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.07 | |
| KOG2485|consensus | 335 | 98.03 | ||
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.98 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.97 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.96 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 97.92 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.91 | |
| KOG2423|consensus | 572 | 97.9 | ||
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.89 | |
| KOG0469|consensus | 842 | 97.87 | ||
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.86 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.85 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.85 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.84 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.83 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.83 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.8 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.79 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.79 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.77 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.74 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.73 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.71 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.67 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 97.67 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.66 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.65 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.65 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.64 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.61 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.6 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 97.59 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.58 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.58 | |
| KOG4273|consensus | 418 | 97.57 | ||
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.57 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.55 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.54 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 97.54 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.52 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.49 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.47 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.47 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.47 | |
| KOG0780|consensus | 483 | 97.46 | ||
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.46 | |
| KOG0446|consensus | 657 | 97.45 | ||
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 97.44 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.44 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 97.42 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.41 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.41 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.41 | |
| PLN02674 | 244 | adenylate kinase | 97.4 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.39 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.38 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.31 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.31 | |
| PRK10646 | 153 | ADP-binding protein; Provisional | 97.29 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.28 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.28 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.27 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.27 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.27 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.24 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.24 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.23 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.23 | |
| KOG1533|consensus | 290 | 97.23 | ||
| PF00625 | 183 | Guanylate_kin: Guanylate kinase; InterPro: IPR0081 | 97.23 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.23 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.23 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 97.22 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.21 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 97.21 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 97.2 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.19 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.19 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.18 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.17 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.17 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.17 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.16 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.16 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 97.15 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.15 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.14 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 97.14 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 97.13 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.13 | |
| smart00072 | 184 | GuKc Guanylate kinase homologues. Active enzymes c | 97.12 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 97.11 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 97.1 | |
| PRK07667 | 193 | uridine kinase; Provisional | 97.1 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.1 | |
| PF02367 | 123 | UPF0079: Uncharacterised P-loop hydrolase UPF0079; | 97.09 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.07 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.07 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.06 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 97.06 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.06 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.06 |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=219.50 Aligned_cols=173 Identities=28% Similarity=0.377 Sum_probs=151.6
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
.+.++..+||+++|+.|||||+|+.||....|. .+..|+|+.+...++.+ +++.+++++|||+|+++|++...+|+++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee-cceEEEEEeeeccccHHHhhhhHhhccC
Confidence 457789999999999999999999999999997 67899999888888877 7899999999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEE-EEEeeeec
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY-IQATCAIT 170 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 170 (202)
++++|+|||+++.+||..+.+|+.++.++ ...+.|.++||||+|+.+.......+. ..++...+.+ ++++||++
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a----~~fa~~~~~~~f~ETSAK~ 156 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEA----QEFADELGIPIFLETSAKD 156 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHH----HHHHHhcCCcceeecccCC
Confidence 99999999999999999999999998887 566899999999999987654333322 1233456677 99999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q psy1315 171 GDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~~~ 191 (202)
+.||++.|..+...+.+++..
T Consensus 157 ~~NVe~~F~~la~~lk~~~~~ 177 (205)
T KOG0084|consen 157 STNVEDAFLTLAKELKQRKGL 177 (205)
T ss_pred ccCHHHHHHHHHHHHHHhccc
Confidence 999999999999998877543
|
|
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=211.71 Aligned_cols=169 Identities=25% Similarity=0.357 Sum_probs=148.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+|++++|+.++|||||+.|+..+.|.+. .+|+|.-+....+.+ ....++|.||||+|+++|.++-+.|+++++++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~-~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTV-DDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEe-CCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 3578999999999999999999999999865 899998888877777 56689999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||+++.+||..+..|+.++.+.. .+++-+.+||||+|+.+. ...++.+.+ +...+..|+++||+++.|
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~-~~~~vialvGNK~DL~~~R~V~~~ea~~y------Ae~~gll~~ETSAKTg~N 154 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQA-SPNIVIALVGNKADLLERREVEFEEAQAY------AESQGLLFFETSAKTGEN 154 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhC-CCCeEEEEecchhhhhhcccccHHHHHHH------HHhcCCEEEEEecccccC
Confidence 99999999999999999999999884 478888999999999874 344444443 356788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy1315 174 LHEGINELYQLILKKRKLQK 193 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~~~~~ 193 (202)
++++|..|.+.+........
T Consensus 155 v~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 155 VNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred HHHHHHHHHHhccCcccccc
Confidence 99999999999987765544
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=213.62 Aligned_cols=173 Identities=16% Similarity=0.249 Sum_probs=141.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.+..+||+++|+.|||||||+++|.+..+. ++.++.+..+....+.. ++..+.+++||++|++++..++..+++++|+
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 456799999999999999999999998875 45567777665555544 5567899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++++|+.+..|+..+... .++.|++|||||+|+.... ..++.+.. +...++++++|||++|.
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~------a~~~~~~~~e~SAk~g~ 153 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAY------AERNGMTFFEVSPLCNF 153 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHH------HHHcCCEEEEecCCCCC
Confidence 99999999999999999888888654 3589999999999996543 33333332 23456789999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhh
Q psy1315 173 GLHEGINELYQLILKKRKLQKTNKM 197 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~~~~~~~~ 197 (202)
||+++|+++.+.+..++.+.+.++.
T Consensus 154 ~V~~~F~~l~~~i~~~~~~~~~~~~ 178 (189)
T cd04121 154 NITESFTELARIVLMRHGRPPQSPP 178 (189)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 9999999999988877765554443
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=205.53 Aligned_cols=169 Identities=22% Similarity=0.299 Sum_probs=147.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.+|++|+|+.+||||||+++++++.|. .+.+|+|+.+-..++.+ .+..+.+++|||+|+|+|.++.+.|++++.+
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEE-cCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 446699999999999999999999999997 77899998887777766 6789999999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|+|||+++..||++...|+....++....+..+++||||.||.+..+....+.... +...+..|+++||+.|+||
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~k----Akel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERK----AKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHH----HHHhCcEEEEecccCCCCH
Confidence 999999999999999999999999986666799999999999998766555554322 2345678999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKKR 189 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~ 189 (202)
.++|..|...+....
T Consensus 174 k~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 174 KQLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHHhccCcc
Confidence 999999888876553
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=204.29 Aligned_cols=179 Identities=46% Similarity=0.814 Sum_probs=143.9
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||...+.++... -.++.+||+++|++|||||||++++..+.+..+.||.+.+...+ +...+.+++||+||++.
T Consensus 1 m~~~~~~~~~~~--~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~-----~~~~~~~~i~D~~Gq~~ 73 (181)
T PLN00223 1 MGLSFTKLFSRL--FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV-----EYKNISFTVWDVGGQDK 73 (181)
T ss_pred CchHHHHHHHHh--cCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEE-----EECCEEEEEEECCCCHH
Confidence 785555554222 13566999999999999999999999888877788888766543 34568899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+..+|..+++++|++|+|||+++++++.....++..........+.|++||+||+|+.+.....++...+..... ....
T Consensus 74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~-~~~~ 152 (181)
T PLN00223 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRH 152 (181)
T ss_pred HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCcccc-CCCc
Confidence 999999999999999999999999999988888877765434458999999999999877766666666554322 1234
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
+.+++|||++|+|++++|++|.+.+.+
T Consensus 153 ~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 153 WYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred eEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 567899999999999999999888764
|
|
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=196.45 Aligned_cols=171 Identities=25% Similarity=0.364 Sum_probs=147.9
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCcccc-ccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPT-IGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
+.+...+||+++|..|+|||||+.+|..+.|.+..|+ +|+.+......+ ++..+++.+|||+|+++|+++.++|++.+
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRtLTpSyyRga 84 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRTLTPSYYRGA 84 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhccCHhHhccC
Confidence 3567789999999999999999999999999876665 898888888877 78899999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
.++|+|||++.+++|..+..|+.++-.+...+++..++|+||+|..++......+. ..+++.+.+-|++|||++.+
T Consensus 85 qGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG----~kfAr~h~~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 85 QGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEG----LKFARKHRCLFIECSAKTRE 160 (209)
T ss_pred ceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHH----HHHHHhhCcEEEEcchhhhc
Confidence 99999999999999999999998888776777888999999999775443322222 23446678899999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
||+..|++++..+.+..
T Consensus 161 ~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 161 NVQCCFEELVEKIIETP 177 (209)
T ss_pred cHHHHHHHHHHHHhcCc
Confidence 99999999999987653
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=203.42 Aligned_cols=177 Identities=63% Similarity=1.071 Sum_probs=142.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.+||+++|++|||||||++++.+..+..+.||.+.+.........+...+.+.+|||||++.+...+..+++++|++|+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988877778888777666654434467899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|+|+++++++.....|+..+.......+.|+++|+||+|+.......+....+..........++++++||+++.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 99999998898888777776654344579999999999997665555566555433332334578999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy1315 178 INELYQLILKKRKLQKT 194 (202)
Q Consensus 178 ~~~l~~~~~~~~~~~~~ 194 (202)
+++|.+.+.+.++....
T Consensus 162 ~~~l~~~l~~~~~~~~~ 178 (183)
T cd04152 162 LEKLYEMILKRRKMLRQ 178 (183)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999988766554433
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=207.87 Aligned_cols=162 Identities=25% Similarity=0.356 Sum_probs=131.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+.|+++|+.|||||||++++..+.|. .+.+|.+..+....+.. ++..+.+++||++|++++..++..+++++|++|+|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence 46999999999999999999999886 45678776666555544 55679999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||++++++|+.+..|+..+... ...+.|+++|+||+|+...... .+.+...+ ...++.+++|||++|.||++
T Consensus 80 fDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~-----~~~~~~~~etSAktg~gV~e 153 (202)
T cd04120 80 YDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQ-----QITGMRFCEASAKDNFNVDE 153 (202)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH-----hcCCCEEEEecCCCCCCHHH
Confidence 9999999999999887765443 4568999999999999654332 22222211 12356899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 177 GINELYQLILKK 188 (202)
Q Consensus 177 l~~~l~~~~~~~ 188 (202)
+|+++++.+.+.
T Consensus 154 ~F~~l~~~~~~~ 165 (202)
T cd04120 154 IFLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHHh
Confidence 999999987643
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=201.78 Aligned_cols=179 Identities=46% Similarity=0.801 Sum_probs=143.0
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||...+.++.... .++.+||+++|++|||||||++++..+.+..+.||.+.+...+ +...+.+.+||+||++.
T Consensus 1 ~~~~~~~~~~~~~--~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~-----~~~~~~~~l~D~~G~~~ 73 (182)
T PTZ00133 1 MGLWLSSAFKSLF--GKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETV-----EYKNLKFTMWDVGGQDK 73 (182)
T ss_pred CchHHHHHHHHhc--CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEE-----EECCEEEEEEECCCCHh
Confidence 7866655543332 2456999999999999999999998888877778888766543 23568899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+..++..+++++|++|+|+|+++++++.....++..........+.|++||+||.|+.+.....++...+..... ....
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~-~~~~ 152 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSV-RQRN 152 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcc-cCCc
Confidence 999999999999999999999999999998888887765433457899999999999776555566555554322 3345
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
+.++++||++|.|++++|++|.+.+.+
T Consensus 153 ~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 153 WYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred EEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 678899999999999999999987764
|
|
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=201.86 Aligned_cols=170 Identities=25% Similarity=0.315 Sum_probs=145.9
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
+.+...+||+++|++|||||+|+.+|..+.|. ....|+|+.+...++.. ++..+.+++|||+|++++.++..+|++.|
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEe-CCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 37889999999999999999999999999886 66788898888877776 67889999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++++|||+++..||+++..|+..+... ...++|.++||||+|+........-+. ..++...+++|+++||++|.
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~g----e~lA~e~G~~F~EtSAk~~~ 160 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERG----EALAREYGIKFFETSAKTNF 160 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHH----HHHHHHhCCeEEEccccCCC
Confidence 9999999999999999999977777665 566999999999999987443322222 12335568999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
||++.|-.|.+.+..+.
T Consensus 161 NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 161 NIEEAFLSLARDILQKL 177 (207)
T ss_pred CHHHHHHHHHHHHHhhc
Confidence 99999999999888643
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=200.47 Aligned_cols=173 Identities=47% Similarity=0.853 Sum_probs=139.6
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||......+ .++.+||+++|++|||||||++++..+.+..+.||.+....... ...+.+.+||+||++.
T Consensus 1 ~~~~~~~~~------~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~l~l~D~~G~~~ 69 (175)
T smart00177 1 MGKLFSKLF------GNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVT-----YKNISFTVWDVGGQDK 69 (175)
T ss_pred Cchhhhhhc------CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEE-----ECCEEEEEEECCCChh
Confidence 676544332 24569999999999999999999988777777788887665443 3468899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+...+..+++++|++|+|||++++++++....++..+.......+.|++||+||+|+.+.....++...+..... ....
T Consensus 70 ~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~ 148 (175)
T smart00177 70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSI-RDRN 148 (175)
T ss_pred hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCcccc-CCCc
Confidence 999999999999999999999999999999988888776533457899999999999776555566665544332 2345
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+.++++||++|.|++++|++|.+.+
T Consensus 149 ~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 149 WYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 6788999999999999999998765
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=199.53 Aligned_cols=171 Identities=19% Similarity=0.278 Sum_probs=145.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....+||+++|++|+|||||++++.+.+|. .+..|+|..+.+..+.+ +...+.++||||+|+++|.++...+++.+|
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V-d~~~vtlQiWDTAGQERFqsLg~aFYRgaD 83 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV-DDRSVTLQIWDTAGQERFQSLGVAFYRGAD 83 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE-cCeEEEEEEEecccHHHhhhcccceecCCc
Confidence 4567899999999999999999999999997 67899998888888877 688899999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCC---CCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcC-cceEEEEEee
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNND---NFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNN-MHLYYIQATC 167 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~S 167 (202)
++++|||++++.||+.+..|-.+.+.+.. ....|+||+|||+|+.+.. ..+.-.. ..+|. ..++|+|++|
T Consensus 84 cCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A----q~WC~s~gnipyfEtS 159 (210)
T KOG0394|consen 84 CCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA----QTWCKSKGNIPYFETS 159 (210)
T ss_pred eEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHH----HHHHHhcCCceeEEec
Confidence 99999999999999999999988887643 2368999999999997632 2211111 23433 4689999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHh
Q psy1315 168 AITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+...||++.|+.+.+.......
T Consensus 160 AK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 160 AKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred ccccccHHHHHHHHHHHHHhccc
Confidence 99999999999999998876654
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=196.53 Aligned_cols=167 Identities=25% Similarity=0.327 Sum_probs=146.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
+...+|++++|+.|||||+|+.++..+.|. ....|+|+.+-.-.+.+ +...+++++|||+|++.+.+...+|++.+.+
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 456899999999999999999999999996 45678888887777777 7899999999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|+|||++++++|..+..|+..+.+. ..++..+++|+||+||...+.....+. ..+++.++..++++||++++|+
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEG----eaFA~ehgLifmETSakt~~~V 156 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEG----EAFAREHGLIFMETSAKTAENV 156 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHH----HHHHHHcCceeehhhhhhhhhH
Confidence 99999999999999999999999887 467999999999999977654443333 2355678899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKK 188 (202)
Q Consensus 175 ~~l~~~l~~~~~~~ 188 (202)
+|+|......+++.
T Consensus 157 EEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 157 EEAFINTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988888755
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=198.29 Aligned_cols=161 Identities=47% Similarity=0.864 Sum_probs=134.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
.+.++|+++|++|||||||++++....+..+.||.+.+..... ...+.+++||+||++++...+..+++++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT-----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEE-----ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 4579999999999999999999998887777788887665333 35688999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|||++++.++.....++..........+.|+++|+||+|+.+....+++...++.... ....++++++||++|.|+++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRI-RDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCcc-CCCcEEEEEeeCCCCCChHH
Confidence 99999999999999888888776533457899999999999776666677776554332 22346799999999999999
Q ss_pred HHHHHHH
Q psy1315 177 GINELYQ 183 (202)
Q Consensus 177 l~~~l~~ 183 (202)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=201.86 Aligned_cols=175 Identities=22% Similarity=0.250 Sum_probs=137.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+++|++|||||||++++.+..+. .+.+|.+.++. ....+ ++..+.+.+|||||++++..++..+++.+|++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i 80 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVI-DEETCLLDILDTAGQEEYSAMRDQYMRTGQGF 80 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEE-CCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence 34689999999999999999999998875 55677665553 22223 45678899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||++++++|+.+..|+..+.......+.|+++|+||+|+.+... ..+..... ...+.+++++||++|.|
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~------~~~~~~~~e~Sak~~~g 154 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA------KSFGIPFLETSAKQRVN 154 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH------HHhCCEEEEeeCCCCCC
Confidence 99999999999999998888877654455889999999999865432 22222221 22356899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 174 LHEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
++++|+++++.+.+.-++...+...+
T Consensus 155 i~~~~~~l~~~l~~~~~~~~~~~~~~ 180 (189)
T PTZ00369 155 VDEAFYELVREIRKYLKEDMPSQKQK 180 (189)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhh
Confidence 99999999998876654444443333
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=199.40 Aligned_cols=164 Identities=22% Similarity=0.279 Sum_probs=130.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++.++.++ .+.|+.+..+. ..... ++..+.+.+||+||++++..++..+++.+|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 479999999999999999999999886 55677764443 22222 4567889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|||++++.+|..+..|+..+.......+.|+++|+||+|+.+.......+. ..++...++++++|||++|.||+++
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~----~~~a~~~~~~~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEG----RNLAREFNCPFFETSAALRHYIDDA 155 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHH----HHHHHHhCCEEEEEecCCCCCHHHH
Confidence 999999999999988776665543345899999999999865433221111 1122344679999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 178 INELYQLILKK 188 (202)
Q Consensus 178 ~~~l~~~~~~~ 188 (202)
|+++++.+.+.
T Consensus 156 f~~l~~~~~~~ 166 (172)
T cd04141 156 FHGLVREIRRK 166 (172)
T ss_pred HHHHHHHHHHh
Confidence 99999887753
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=197.45 Aligned_cols=161 Identities=22% Similarity=0.334 Sum_probs=131.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++.+..+. .+.++.+.++....+.. ++..+.+.+||+||++++...+..+++++|++|+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999999998886 44667776665554444 5567899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++++|+.+..|+..+... ..++.|+++|+||+|+..... .++.... +...++++++|||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~e~Sa~~~~~i~ 153 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQF------ADENGLLFLECSAKTGENVE 153 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHH------HHHcCCEEEEEECCCCCCHH
Confidence 99999999999999888776554 345789999999999976533 2333332 22346789999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 176 EGINELYQLILK 187 (202)
Q Consensus 176 ~l~~~l~~~~~~ 187 (202)
++|+++.+.+.+
T Consensus 154 e~f~~l~~~~~~ 165 (166)
T cd04122 154 DAFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=187.91 Aligned_cols=170 Identities=23% Similarity=0.333 Sum_probs=147.7
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
..+...++.+++|++|+|||||+.+|..+.|. .+..|+|+.+...++++ ++..++++|||++|++.|+.+...|++..
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAGqErFrtitstyyrgt 81 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAGQERFRTITSTYYRGT 81 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeec-CCcEEEEEEeecccHHHHHHHHHHHccCC
Confidence 34566788999999999999999999999887 67888999988888888 78999999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++++|||+++.+||.+..+|+.++..+ .+..|-|+||||.|+++........+ ..++...++.+|++|+++++
T Consensus 82 hgv~vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dA----r~~A~~mgie~FETSaKe~~ 155 (198)
T KOG0079|consen 82 HGVIVVYDVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDA----RAFALQMGIELFETSAKENE 155 (198)
T ss_pred ceEEEEEECcchhhhHhHHHHHHHHHhc--CccccceecccCCCCccceeeehHHH----HHHHHhcCchheehhhhhcc
Confidence 9999999999999999999999998876 44899999999999987643332222 23445678999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
|++..|.-|.+++.+.+.
T Consensus 156 NvE~mF~cit~qvl~~k~ 173 (198)
T KOG0079|consen 156 NVEAMFHCITKQVLQAKL 173 (198)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 999999999998877663
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=200.45 Aligned_cols=165 Identities=24% Similarity=0.286 Sum_probs=133.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++|.+..+. .+.+|.+..+....+....+..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999998875 45788877665555544225678999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccC---CCCCCcEEEEeeCCCCCC--CcCHHHHHHHhCchhhcCcce-EEEEEeeeecCC
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNN---DNFNVPILILANKQDLPN--AIQIKQIEKLLGLYELNNMHL-YYIQATCAITGD 172 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~pvivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 172 (202)
||++++++|+.+..|+..+.... ...+.|+++|+||+|+.. ....++..... ...+ .++++|||++|.
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~e~Sak~~~ 154 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC------KENGFIGWFETSAKEGI 154 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHH------HHcCCceEEEEeCCCCC
Confidence 99999999999988877665431 235789999999999973 33444444433 2223 679999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
|++++|++|++.+.+...
T Consensus 155 ~v~e~f~~l~~~l~~~~~ 172 (201)
T cd04107 155 NIEEAMRFLVKNILANDK 172 (201)
T ss_pred CHHHHHHHHHHHHHHhch
Confidence 999999999998876543
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=199.08 Aligned_cols=166 Identities=23% Similarity=0.363 Sum_probs=132.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccc---------cccceEEEEEEcCCCCCchhhHH
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIG---------KCKGINFLIWDVGGQEKLRPLWK 86 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~D~~G~~~~~~~~~ 86 (202)
++.+||+++|++|||||||++++.++.+. .+.++.+..+........ ....+.+.+||+||++++...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 35699999999999999999999998886 456777765554433321 13468899999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEE
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 164 (202)
.+++++|++|+|||+++++++..+..|+..+.......+.|+++|+||+|+.+... ....... +...+++++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~------~~~~~~~~~ 155 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKAL------ADKYGIPYF 155 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHH------HHHcCCeEE
Confidence 99999999999999999999999999888876654445789999999999975432 2233322 233456899
Q ss_pred EeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
++||++|.|++++|+++.+.+.++
T Consensus 156 e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 156 ETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999877643
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=192.96 Aligned_cols=158 Identities=50% Similarity=0.890 Sum_probs=128.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
+||+++|.+|||||||++++..+.+..+.||.+.....+. ...+.+.+||+||++++...+..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEE-----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999988888777888887664433 35688999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
|++++.++.....++..+.........|+++|+||+|+.+.....++...+..... ....+.++++||++|.|++++|+
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSL-RNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc-CCCCEEEEEeeCCCCCCHHHHHH
Confidence 99999999999888888765434457899999999999765444454444433222 23456788999999999999999
Q ss_pred HHHH
Q psy1315 180 ELYQ 183 (202)
Q Consensus 180 ~l~~ 183 (202)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04150 155 WLSN 158 (159)
T ss_pred HHhc
Confidence 9864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=196.61 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=126.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|+|||||+.++..+.|. .+.||.+..+. ..+.. ++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~-~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSV-DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEE-CCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 68999999999999999999999986 56788875553 23333 56779999999999999999999999999999999
Q ss_pred EeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCCc------------CHHHHHHHhCchhhcCcceE-EEE
Q psy1315 99 IDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNAI------------QIKQIEKLLGLYELNNMHLY-YIQ 164 (202)
Q Consensus 99 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~-~~~ 164 (202)
||+++++||+.+ ..|+..+... .++.|+++||||+|+.+.. ..++.+. ++...+. +++
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~------~a~~~~~~~~~ 151 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHY--APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE------LRKQIGAAAYI 151 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH------HHHHcCCCEEE
Confidence 999999999998 5677766543 2479999999999996532 2222222 2233444 699
Q ss_pred EeeeecCCCHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+|||++|.||+++|+.+++.+
T Consensus 152 E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 152 ECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ECCCCcccCHHHHHHHHHHHH
Confidence 999999999999999999865
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=193.48 Aligned_cols=163 Identities=43% Similarity=0.746 Sum_probs=134.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
||+++|.+|||||||++++.+..+..+.||.+...... ....+.+.+||+||++++...+..+++++|++|+|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~-----~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETV-----EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEE-----EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987777778877665433 3457889999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (202)
+++++++.....|+..+.......+.|+++|+||+|+.......++...+..........+.+++|||++|.|++++|++
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 99999999999898888765444568999999999997666666666655433322223467889999999999999999
Q ss_pred HHHHHHHH
Q psy1315 181 LYQLILKK 188 (202)
Q Consensus 181 l~~~~~~~ 188 (202)
|.+.+...
T Consensus 156 l~~~~~~~ 163 (169)
T cd04158 156 LSRQLVAA 163 (169)
T ss_pred HHHHHhhc
Confidence 99877654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=197.50 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=128.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.+..+||+++|++|||||||++++..+.+. .+.||.+..+. ..+.+ ++..+.+.+|||+|++++..+++.+++++|+
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~-~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~ 79 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 79 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEE-CCEEEEEEEEECCCchhhHhhhhhhcCCCCE
Confidence 356789999999999999999999999886 56778775443 33333 5677899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCC--------------cCHHHHHHHhCchhhcCcc
Q psy1315 95 IIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNA--------------IQIKQIEKLLGLYELNNMH 159 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~ 159 (202)
+|+|||++++.+|+.+ ..|+..+... .++.|+++|+||+|+.+. ...++.+ .++...
T Consensus 80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~------~~a~~~ 151 (182)
T cd04172 80 VLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGA------NMAKQI 151 (182)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHH------HHHHHc
Confidence 9999999999999997 5676666553 357999999999998642 1222222 233445
Q ss_pred e-EEEEEeeeecCCC-HHHHHHHHHHHHH
Q psy1315 160 L-YYIQATCAITGDG-LHEGINELYQLIL 186 (202)
Q Consensus 160 ~-~~~~~~Sa~~~~~-v~~l~~~l~~~~~ 186 (202)
+ .+|++|||++|.| |+++|+.+++.+.
T Consensus 152 ~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 152 GAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 5 4899999999998 9999999988643
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=200.15 Aligned_cols=169 Identities=26% Similarity=0.357 Sum_probs=136.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||+++|.+..+.. +.++.+..+....+....+..+.+++||+||++.+...+..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999988864 457777666555554434556889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++++|..+..|+..+.........|+++|+||+|+..... ....... +...+++++++||++|.|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~------~~~~~~~~~e~Sak~g~~v~ 155 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKL------AKDLGMKYIETSARTGDNVE 155 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHH------HHHhCCEEEEEeCCCCCCHH
Confidence 999999999999999888877654444678999999999976432 2233322 23345789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy1315 176 EGINELYQLILKKRKLQK 193 (202)
Q Consensus 176 ~l~~~l~~~~~~~~~~~~ 193 (202)
++|++|.+.+.++....+
T Consensus 156 e~f~~l~~~~~~~~~~~~ 173 (211)
T cd04111 156 EAFELLTQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 999999998887754443
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=193.56 Aligned_cols=162 Identities=25% Similarity=0.330 Sum_probs=132.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+++|++|+|||||++++.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|++|
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 4689999999999999999999998876 45777777665555444 455689999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++++|..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+.+++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v 153 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA------DEYGIKFLETSAKANINV 153 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH------HHcCCEEEEEeCCCCCCH
Confidence 999999999999999888777654 34579999999999997543 223333322 234568999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILK 187 (202)
Q Consensus 175 ~~l~~~l~~~~~~ 187 (202)
+++|+++.+.+..
T Consensus 154 ~~~~~~i~~~~~~ 166 (167)
T cd01867 154 EEAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=196.51 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=130.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|+.|||||||+++|.++.+. .+.||.+..+....+.. ++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 58999999999999999999999886 47889887776555544 45678999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC---HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ---IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
||+++++++..+..|+..+... .....| ++|+||+|+..... ....... ...++...+.++++|||++|.|++
T Consensus 80 ~D~t~~~s~~~i~~~~~~~~~~-~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~--~~~~a~~~~~~~~e~SAk~g~~v~ 155 (182)
T cd04128 80 FDLTRKSTLNSIKEWYRQARGF-NKTAIP-ILVGTKYDLFADLPPEEQEEITKQ--ARKYAKAMKAPLIFCSTSHSINVQ 155 (182)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCE-EEEEEchhccccccchhhhhhHHH--HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888877654 233566 68899999964211 1111111 112233445789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 176 EGINELYQLILKKR 189 (202)
Q Consensus 176 ~l~~~l~~~~~~~~ 189 (202)
++|+++.+.+.+.+
T Consensus 156 ~lf~~l~~~l~~~~ 169 (182)
T cd04128 156 KIFKIVLAKAFDLP 169 (182)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998886543
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=192.79 Aligned_cols=157 Identities=23% Similarity=0.334 Sum_probs=127.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|+|||||++++.+..+. .+.++.+..+....+.. ++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 58999999999999999999998886 45788777665555544 45568899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||++++++|..+..|+..+... ...+.|+++|+||+|+...... .+.... ++..+.++++|||++|.|+++
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~------~~~~~~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 80 YDISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKL------AKEYGMDFFETSACTNSNIKE 152 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHH------HHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999888777654 3447999999999999765432 222222 123447899999999999999
Q ss_pred HHHHHHHH
Q psy1315 177 GINELYQL 184 (202)
Q Consensus 177 l~~~l~~~ 184 (202)
+|++|.+.
T Consensus 153 ~f~~l~~~ 160 (161)
T cd04117 153 SFTRLTEL 160 (161)
T ss_pred HHHHHHhh
Confidence 99999864
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=193.18 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=128.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
++||+++|++|||||||++++..+.+. .+.++.+..+. ..+.. ++..+.+.+|||||++.+..++..+++++|++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVL 78 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEE-CCEEEEEEEEECCCcccchhHHHHHHhhCCEEEE
Confidence 479999999999999999999988775 44566664433 23333 4567889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++.+++.+..|+..+.......+.|+++|+||+|+...... ..... ++...+++++++||++|.|++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~v~ 152 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN------LARQWGCAFLETSAKAKINVN 152 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH------HHHHhCCEEEEeeCCCCCCHH
Confidence 9999999999999988888876545568999999999999754322 22222 122345789999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 176 EGINELYQLIL 186 (202)
Q Consensus 176 ~l~~~l~~~~~ 186 (202)
++|+++.+.+.
T Consensus 153 ~~~~~l~~~l~ 163 (164)
T cd04175 153 EIFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHHhh
Confidence 99999987664
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=192.37 Aligned_cols=170 Identities=22% Similarity=0.324 Sum_probs=150.0
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
..+...+||+++|++|+|||-|+.++..+.|. +..+|+|+...+....+ +++.++.+||||+|+++|+.....|++.+
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee-cCcEEEEeeecccchhhhccccchhhccc
Confidence 46789999999999999999999999999996 77899999999988877 78999999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
.++++|||+++..+|+.+.+|+.++... ..+++++++||||+||.+.. ..++.+. +++..+..|+++||..
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~------~Ae~~~l~f~EtSAl~ 160 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKA------FAEKEGLFFLETSALD 160 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHh------HHHhcCceEEEecccc
Confidence 9999999999999999999999999887 56799999999999997633 3333333 3356778999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q psy1315 171 GDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~~~ 191 (202)
..|+++.|+.++..+.+...+
T Consensus 161 ~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 161 ATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 999999999999888766443
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=196.92 Aligned_cols=166 Identities=25% Similarity=0.348 Sum_probs=135.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
++..++|+++|++|||||||+++|.+..+. .+.+|.+..+....+.. .+..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ 81 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRTITSTYYRGTHG 81 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence 456899999999999999999999998875 56788877666555544 4566789999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++++|..+..|+..+... ....|++||+||+|+..... ..+..... ...+.+++++||++|.
T Consensus 82 iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~ 153 (199)
T cd04110 82 VIVVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFA------GQMGISLFETSAKENI 153 (199)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHH------HHcCCEEEEEECCCCc
Confidence 99999999999999999888877654 34789999999999975432 22233222 2335789999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
|++++|++|.+.+...++
T Consensus 154 gi~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 154 NVEEMFNCITELVLRAKK 171 (199)
T ss_pred CHHHHHHHHHHHHHHhhh
Confidence 999999999998876543
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=182.16 Aligned_cols=170 Identities=22% Similarity=0.340 Sum_probs=149.2
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
.+.+...+|++++|+.|+|||+|+++|+..++. ...+|+|+.+...-+.+ .++.++++||||+|+++|++....|++.
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV-GgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee-cCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 456778899999999999999999999999886 66899998877766666 6789999999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+.+.++|||++++++|..+..|+.....- ..+++-+++++||.|+..+.+....+. ..++..+.+.+.++||++|
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEA----s~FaqEnel~flETSa~TG 156 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEA----SRFAQENELMFLETSALTG 156 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHH----Hhhhcccceeeeeeccccc
Confidence 99999999999999999999999887665 577899999999999998877665555 3555667789999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKK 188 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~ 188 (202)
+|++|.|-...+.+..+
T Consensus 157 eNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 157 ENVEEAFLKCARTILNK 173 (214)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999998888877654
|
|
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=195.95 Aligned_cols=167 Identities=30% Similarity=0.360 Sum_probs=135.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+.. +.++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv 79 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV 79 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence 589999999999999999999998864 6788876665554444 45578899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||++++++|..+..|+..+... .....|+++|+||+|+.+... ....... +...+++++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~------~~~~~~~~~evSa~~~~~i~~ 152 (188)
T cd04125 80 YDVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAKSF------CDSLNIPFFETSAKQSINVEE 152 (188)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHHHH------HHHcCCeEEEEeCCCCCCHHH
Confidence 9999999999999888777654 334689999999999875432 2222222 122356899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy1315 177 GINELYQLILKKRKLQKT 194 (202)
Q Consensus 177 l~~~l~~~~~~~~~~~~~ 194 (202)
+|+++.+.+.++....+.
T Consensus 153 ~f~~l~~~~~~~~~~~~~ 170 (188)
T cd04125 153 AFILLVKLIIKRLEEQEL 170 (188)
T ss_pred HHHHHHHHHHHHhhcCcC
Confidence 999999999876655444
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=190.46 Aligned_cols=173 Identities=47% Similarity=0.789 Sum_probs=152.3
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHH
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWK 86 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 86 (202)
.++++.... .+.++|+++|..|||||||++++.......+.||.|++...+.+ ..+.+.+||.+|+..+...|+
T Consensus 3 ~~~~~~~~~-~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~-----~~~~~~~~d~gG~~~~~~~w~ 76 (175)
T PF00025_consen 3 SVLSKLKSK-KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKY-----KGYSLTIWDLGGQESFRPLWK 76 (175)
T ss_dssp HHHHHCTTT-TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEE-----TTEEEEEEEESSSGGGGGGGG
T ss_pred HHHHHhccc-CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeee-----CcEEEEEEeccccccccccce
Confidence 344444333 78999999999999999999999988777889999988887765 567899999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.|++++|++|+|+|.++++.+......+..+.......+.|++|++||+|+.+.....++...+.+..+.....+.++.|
T Consensus 77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~ 156 (175)
T PF00025_consen 77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSC 156 (175)
T ss_dssp GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEee
Confidence 99999999999999999999999998888888765666899999999999999888888998888777755678899999
Q ss_pred eeecCCCHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLI 185 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~ 185 (202)
||.+|+|+.+.++||.+++
T Consensus 157 sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 157 SAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp BTTTTBTHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHhcC
Confidence 9999999999999999864
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=191.73 Aligned_cols=161 Identities=40% Similarity=0.686 Sum_probs=132.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
...++|+++|++|||||||++++.+..+..+.+|.+.....+.+ +.+.+.+||+||++.+..++..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~-----~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEY-----EGYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEE-----CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 35789999999999999999999988776777888865555443 3578999999999998899999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|||++++.++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ....++++++||++|.|+++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKI-SSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcccc-CCCceEEEeccCCCCcCHHH
Confidence 99999999999988888877765434468999999999999776655666665543221 34568899999999999999
Q ss_pred HHHHHHH
Q psy1315 177 GINELYQ 183 (202)
Q Consensus 177 l~~~l~~ 183 (202)
+|+++.+
T Consensus 166 l~~~l~~ 172 (173)
T cd04154 166 GIDWLVD 172 (173)
T ss_pred HHHHHhc
Confidence 9999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=181.22 Aligned_cols=170 Identities=23% Similarity=0.303 Sum_probs=143.3
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
.+...-+|+.++|+..+|||||+.++.+..|. ....|.|+.+...++-. ....+.+++|||.|++.++.+...+++.+
T Consensus 16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr-~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYR-SDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred ccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeee-cccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 34556789999999999999999999999985 66788898877776533 55679999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++|+|||++|.+||..+..|...+... .-.+.|+|+|+||||+.+++....... ..+....++.||++||+.+.
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g----~~l~~~LGfefFEtSaK~Ni 169 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERG----RQLADQLGFEFFETSAKENI 169 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHH----HHHHHHhChHHhhhcccccc
Confidence 9999999999999999999999988776 556899999999999987654332221 12234557789999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
|+.++|+.++..+.+..
T Consensus 170 nVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 170 NVKQVFERLVDIICDKM 186 (193)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999999987654
|
|
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=191.85 Aligned_cols=159 Identities=22% Similarity=0.311 Sum_probs=128.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. .+.++.+.++....... ++..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v 80 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence 79999999999999999999999885 45677776555444433 45668999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||++++++++.+..|+..+... .....|+++|+||+|+.+... ........ ...+++++++||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 81 YDITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLA------DQLGFEFFEASAKENINVKQ 153 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHH------HHcCCEEEEEECCCCCCHHH
Confidence 9999999999999888776554 344789999999999975432 22222221 23356899999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 177 GINELYQLIL 186 (202)
Q Consensus 177 l~~~l~~~~~ 186 (202)
+|+++.+.+.
T Consensus 154 l~~~l~~~~~ 163 (165)
T cd01865 154 VFERLVDIIC 163 (165)
T ss_pred HHHHHHHHHH
Confidence 9999998765
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=197.40 Aligned_cols=163 Identities=25% Similarity=0.345 Sum_probs=128.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
+||+++|.+|||||||+++|.++.+..+.+|.+..+....+ ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~-----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW-----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe-----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 58999999999999999999999987777887766544432 4578999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC---------------------cCHHHHHHHhCchh----
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA---------------------IQIKQIEKLLGLYE---- 154 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~---------------------~~~~~~~~~~~~~~---- 154 (202)
|++++++|..+..|+..+... ...+.|+++|+||+|+.+. ...++.........
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~ 154 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence 999999999999998887664 3457899999999999651 11222222211000
Q ss_pred ----hcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 155 ----LNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 155 ----~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
......++|++|||++|.||+++|+.+++.+...
T Consensus 155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPL 192 (220)
T ss_pred ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001126899999999999999999999877644
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=192.84 Aligned_cols=164 Identities=26% Similarity=0.364 Sum_probs=129.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
||+++|++|||||||++++.++.+. .+.||.+..+....+.. ++..+.+++||+||++++..++..+++++|++++||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEI-LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 7999999999999999999999886 66788887766554444 456789999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
|+++++++..+..|+..+.........|+++|+||+|+............. ..+....+.+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDA--IKLAAEMQAEYWSVSALSGENVREFFF 158 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHH--HHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999888887665334467899999999986542211111100 011122346789999999999999999
Q ss_pred HHHHHHHH
Q psy1315 180 ELYQLILK 187 (202)
Q Consensus 180 ~l~~~~~~ 187 (202)
.+.+.+.+
T Consensus 159 ~l~~~~~~ 166 (170)
T cd04108 159 RVAALTFE 166 (170)
T ss_pred HHHHHHHH
Confidence 99988753
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=192.46 Aligned_cols=160 Identities=21% Similarity=0.344 Sum_probs=130.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. .+.++.+..+....+.. ++..+.+++||+||++.+..++..+++++|++|+|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSV-RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV 79 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999875 55677777665555544 45678999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCC----CCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDN----FNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~----~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
||+++++++..+..|+..+...... ...|+++|+||+|+.... ...+..... ...+++++++||++|.
T Consensus 80 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~ 153 (168)
T cd04119 80 YDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA------ESKGFKYFETSACTGE 153 (168)
T ss_pred EECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH------HHcCCeEEEEECCCCC
Confidence 9999999999998888887665332 579999999999997432 233332221 2334689999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLIL 186 (202)
Q Consensus 173 ~v~~l~~~l~~~~~ 186 (202)
|++++|++|.+.+.
T Consensus 154 gi~~l~~~l~~~l~ 167 (168)
T cd04119 154 GVNEMFQTLFSSIV 167 (168)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=196.23 Aligned_cols=166 Identities=22% Similarity=0.290 Sum_probs=127.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+++|+.|||||||+.++..+.|. .+.||.+..+.. .... ++..+.+.+|||+|++++..+++.+++++|++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA-QTAV-DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEE-EEEE-CCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 3589999999999999999999999885 567887754432 2223 566789999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCcCH-HHHHHH----h---CchhhcCcce-EEEEEe
Q psy1315 97 FVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQI-KQIEKL----L---GLYELNNMHL-YYIQAT 166 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~----~---~~~~~~~~~~-~~~~~~ 166 (202)
+|||++++++|+.+.. |...+... .++.|+++|+||+|+.+.... ..+... . ....++...+ +++++|
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 157 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLEC 157 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999975 55444432 347999999999999654221 111110 0 0011223334 689999
Q ss_pred eeecCCCHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
||++|.||+++|+++++.+..
T Consensus 158 SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 158 SALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998764
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=200.14 Aligned_cols=164 Identities=21% Similarity=0.210 Sum_probs=131.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
+.-..+||+++|++|||||||+++|....|. .+.||.+..+.. .+.+ ++..+.+.+|||+|++.+..+.+.+++++|
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~-~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad 86 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSD 86 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEE-CCEEEEEEEEeCCCchhhHHHHHHHcCCCc
Confidence 3446789999999999999999999999886 567887755532 3333 567789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCC--------------cCHHHHHHHhCchhhcCc
Q psy1315 94 GIIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNA--------------IQIKQIEKLLGLYELNNM 158 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~ 158 (202)
++|+|||++++++|..+ ..|+..+... .++.|+++|+||+|+... ...++.+ .++..
T Consensus 87 ~vIlVyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~------~~a~~ 158 (232)
T cd04174 87 AVLLCFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGC------ALAKQ 158 (232)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHH------HHHHH
Confidence 99999999999999985 6777766654 247899999999998642 1222222 23344
Q ss_pred ceE-EEEEeeeecCC-CHHHHHHHHHHHHHHH
Q psy1315 159 HLY-YIQATCAITGD-GLHEGINELYQLILKK 188 (202)
Q Consensus 159 ~~~-~~~~~Sa~~~~-~v~~l~~~l~~~~~~~ 188 (202)
.++ +|++|||++|. ||+++|+.++..+.++
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 566 69999999998 8999999999988764
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=191.78 Aligned_cols=159 Identities=19% Similarity=0.253 Sum_probs=125.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++..+.+. .+.+|.+..+ ...... ++..+.+.+||+||++++..++..+++++|++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEV-DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVL 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEE-CCEEEEEEEEECCCccccchHHHHHhhcCCEEEE
Confidence 379999999999999999999988875 3456654222 222222 4566889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++++++.+..|+..+.......+.|+++|+||+|+.+... ....... ....+.+++++||++|.|++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQAL------ARQWGCPFYETSAKSKINVD 152 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHH------HHHcCCeEEEecCCCCCCHH
Confidence 999999999999998888877654456899999999999865322 2222221 12234789999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 176 EGINELYQLI 185 (202)
Q Consensus 176 ~l~~~l~~~~ 185 (202)
++|+++.+.+
T Consensus 153 ~l~~~l~~~~ 162 (163)
T cd04136 153 EVFADLVRQI 162 (163)
T ss_pred HHHHHHHHhc
Confidence 9999998754
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=191.29 Aligned_cols=159 Identities=21% Similarity=0.235 Sum_probs=131.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++++...+. .+.++.+.......+.. +...+.+.+|||+|++.+..++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence 58999999999999999999987765 56788887777666544 45678999999999999988889999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
||+++++++..+..|+..+.... .+.|+++|+||+|+........... +.....++++++||++|.|++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~------~~~~~~~~~~e~Sa~~~~~v~~~f 151 (166)
T cd00877 80 FDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT------FHRKKNLQYYEISAKSNYNFEKPF 151 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH------HHHHcCCEEEEEeCCCCCChHHHH
Confidence 99999999999988888877653 2899999999999974332222221 223456789999999999999999
Q ss_pred HHHHHHHHH
Q psy1315 179 NELYQLILK 187 (202)
Q Consensus 179 ~~l~~~~~~ 187 (202)
++|.+.+.+
T Consensus 152 ~~l~~~~~~ 160 (166)
T cd00877 152 LWLARKLLG 160 (166)
T ss_pred HHHHHHHHh
Confidence 999988865
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=199.26 Aligned_cols=162 Identities=23% Similarity=0.276 Sum_probs=135.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+++|++|||||||++++..+.+. .+.+|.+.++....+.. +...+.+.+||++|++.+..++..+++++|++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 67899999999999999999999988885 56888888877766644 45568999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
|+|||++++++|..+..|+..+... ..+.|+++|+||+|+..... ...+ . +....++++++|||++|.|+
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~------~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-T------FHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-H------HHHhcCCEEEEcCCCCCCCH
Confidence 9999999999999999888887654 34799999999999864322 2222 1 12335678999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKK 188 (202)
Q Consensus 175 ~~l~~~l~~~~~~~ 188 (202)
+++|++|.+.+.+.
T Consensus 161 ~~~f~~l~~~~~~~ 174 (219)
T PLN03071 161 EKPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988654
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=191.27 Aligned_cols=160 Identities=27% Similarity=0.365 Sum_probs=130.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++.+..+. .+.++.+.......... .+..+.+.+||+||++.+...+..+++++|++|+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 479999999999999999999998875 44677676655555444 4556889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++++|..+..|+..+... ...+.|+++|+||+|+..... ..+..... ...+++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~ 153 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFA------DELGIPFLETSAKNATNVE 153 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHH------HHcCCeEEEEECCCCcCHH
Confidence 99999999999999888877654 345789999999999865432 23333322 2346789999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 176 EGINELYQLIL 186 (202)
Q Consensus 176 ~l~~~l~~~~~ 186 (202)
++|+++.+.+.
T Consensus 154 ~~~~~i~~~~~ 164 (166)
T cd01869 154 QAFMTMAREIK 164 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999998775
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=189.31 Aligned_cols=159 Identities=43% Similarity=0.776 Sum_probs=132.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
+|+++|++|||||||++++.+..+..+.|+.+.+...+.. ...+.+.+||+||+..+...+..++.++|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQL----EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEe----CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 5899999999999999999999887777888776655443 345789999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (202)
++++.++.....++..+.......+.|+++|+||+|+.......++...+....++...++++++|||++|+|++++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 99999999988888887765344589999999999997665566666555444444446678999999999999999999
Q ss_pred HHH
Q psy1315 181 LYQ 183 (202)
Q Consensus 181 l~~ 183 (202)
|.+
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=193.21 Aligned_cols=163 Identities=20% Similarity=0.167 Sum_probs=123.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++.++.|. .+.||.+..+. ..... ++..+.+.+||++|++++...+..+++++|++|+
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 78 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEEEE
Confidence 379999999999999999999999884 66788775553 22223 4567899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhC--------chhhcCcc-eEEEEEee
Q psy1315 98 VIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG--------LYELNNMH-LYYIQATC 167 (202)
Q Consensus 98 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~S 167 (202)
|||++++++|+.+.. |+..+... .++.|+++|+||+|+.+.....+...... ...++... .+++++||
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 156 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECS 156 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEec
Confidence 999999999999975 55444332 34799999999999865421111000000 00112223 37899999
Q ss_pred eecCCCHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLI 185 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~ 185 (202)
|++|.|++++|+.++.+.
T Consensus 157 A~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 157 ALTQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998753
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=197.88 Aligned_cols=163 Identities=20% Similarity=0.239 Sum_probs=130.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++|.+..+. .+.+|.+..+....+...+...+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999998886 56788887665555544233568999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCC--CCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNND--NFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
||++++++|+.+..|+..+..... ....|+++|+||+|+.+... ....... ....+++++++||++|+|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~------~~~~~~~~~~iSAktg~gv 154 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARF------AQANGMESCLVSAKTGDRV 154 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHH------HHHcCCEEEEEECCCCCCH
Confidence 999999999999888877766432 23578999999999965332 2222222 1234568899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKK 188 (202)
Q Consensus 175 ~~l~~~l~~~~~~~ 188 (202)
+++|+++.+.+...
T Consensus 155 ~~lf~~l~~~l~~~ 168 (215)
T cd04109 155 NLLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=193.89 Aligned_cols=158 Identities=20% Similarity=0.192 Sum_probs=125.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
++||+++|++|||||||++++.++.++ .+.||.+..+. ..+.+ ++..+.+.+|||+|++.+..+.+.+++++|++|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~il 78 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEI-DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLI 78 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEE-CCEEEEEEEEECCCchhhhhcchhhcCCCCEEEE
Confidence 479999999999999999999999886 55677765443 23333 5677899999999999999999999999999999
Q ss_pred EEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCC--------------cCHHHHHHHhCchhhcCcceE-
Q psy1315 98 VIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNA--------------IQIKQIEKLLGLYELNNMHLY- 161 (202)
Q Consensus 98 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~- 161 (202)
|||+++++||+.+ ..|+..+... .++.|+++|+||+|+.+. ...++.+ .++...++
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~------~~a~~~~~~ 150 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGC------AIAKQLGAE 150 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHH------HHHHHhCCC
Confidence 9999999999996 5676666554 358999999999998642 1122222 23344554
Q ss_pred EEEEeeeecCCC-HHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDG-LHEGINELYQLIL 186 (202)
Q Consensus 162 ~~~~~Sa~~~~~-v~~l~~~l~~~~~ 186 (202)
++++|||++|+| |+++|..+++...
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHHHHh
Confidence 899999999995 9999999998543
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=176.92 Aligned_cols=176 Identities=39% Similarity=0.651 Sum_probs=157.9
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHh
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS 87 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 87 (202)
++++...+ .+.++|.++|..|+||||++++|.+.......||.|+...+..+ +.+.+++||.+|+..+++.|..
T Consensus 6 ilrk~k~k-erE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~-----~~~~L~iwDvGGq~~lr~~W~n 79 (185)
T KOG0073|consen 6 ILRKQKLK-EREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEY-----KGYTLNIWDVGGQKTLRSYWKN 79 (185)
T ss_pred HHHHHHhh-hheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEe-----cceEEEEEEcCCcchhHHHHHH
Confidence 44444333 34999999999999999999999999888889999999888875 6788999999999999999999
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
|+..+|++|+|+|.+++.++++....+..++.....-+.|++|++||.|+......+.+...+.+..+.+.+.++++.||
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs 159 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCS 159 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEe
Confidence 99999999999999999999999988888877666668999999999999999999999998888888888999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~ 189 (202)
|.+|+++.+-++|+.+.+.++.
T Consensus 160 ~~tge~l~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMSRL 181 (185)
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999999888754
|
|
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=196.10 Aligned_cols=164 Identities=21% Similarity=0.175 Sum_probs=126.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++|.++.+. .+.++.+..+... ....++..+.+.+|||||++++...++.+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999998886 4456655544332 222125678899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCc------CHHHHHHHhCchhhcCcceE-EEEEeeeec
Q psy1315 99 IDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAI------QIKQIEKLLGLYELNNMHLY-YIQATCAIT 170 (202)
Q Consensus 99 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 170 (202)
||++++++|+.+.. |+..+... ..+.|+++|+||+|+.... ...+.+.. +...+. ++++|||++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~------~~~~~~~~~~e~Sa~~ 151 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV------AKKQGAFAYLECSAKT 151 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHH------HHHcCCcEEEEccCCC
Confidence 99999999999875 54444332 3478999999999986532 22222222 122334 899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh
Q psy1315 171 GDGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~~~~ 192 (202)
|.|++++|+.+.+.+...+...
T Consensus 152 ~~~v~~~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 152 MENVEEVFDTAIEEALKKEGKA 173 (187)
T ss_pred CCCHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999998776554
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=194.80 Aligned_cols=163 Identities=22% Similarity=0.262 Sum_probs=127.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
||+++|++|||||||+++|.++.+. .+.++.+..+.. .... ++..+.+.+|||||++++..++..+++.+|++|+||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRK-QVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEE-EEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 5899999999999999999988875 345666543322 2222 455678999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCC--CCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNND--NFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|++++++|+.+..|+..+..... ..+.|+++|+||+|+...... ..... +....+++++++||++|.|++
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~------~~~~~~~~~~e~SAk~~~~v~ 152 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA------LARRLGCEFIEASAKTNVNVE 152 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHH------HHHHhCCEEEEecCCCCCCHH
Confidence 99999999999988877755422 357899999999999654332 22222 112335689999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy1315 176 EGINELYQLILKKRKL 191 (202)
Q Consensus 176 ~l~~~l~~~~~~~~~~ 191 (202)
++|+++.+.+.+++..
T Consensus 153 ~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 153 RAFYTLVRALRQQRQG 168 (190)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999988766543
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=189.69 Aligned_cols=159 Identities=18% Similarity=0.264 Sum_probs=125.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|+|||||++++..+.+.. +.++.+ ......... ++..+.+.+||+||++++..++..+++++|++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 78 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIV 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEE-CCEEEEEEEEECCCcccccchHHHHHhhCCEEEE
Confidence 4799999999999999999999988864 345543 223333333 4566789999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||+++++++..+..|+..+.......+.|+++|+||+|+...... ...... +...+.+++++||+++.|++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRAL------AEEWGCPFMETSAKSKTMVN 152 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHH------HHHhCCEEEEecCCCCCCHH
Confidence 9999999999999988888776544468999999999998653222 122221 12234689999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 176 EGINELYQLI 185 (202)
Q Consensus 176 ~l~~~l~~~~ 185 (202)
++|+++.+.+
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd04176 153 ELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHhc
Confidence 9999998653
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=188.70 Aligned_cols=159 Identities=23% Similarity=0.301 Sum_probs=125.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+.. +.++.+..+ ...... ++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEI-DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence 589999999999999999999888753 345544222 222222 45578899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||+++++++..+..|+..+.......+.|+++|+||+|+.... ......... ...+.+++++||++|.|+++
T Consensus 79 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 79 YSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA------RQWGCPFLETSAKERVNVDE 152 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH------HHcCCEEEEeecCCCCCHHH
Confidence 9999999999999888877665445579999999999997543 222222222 22347899999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 177 GINELYQLIL 186 (202)
Q Consensus 177 l~~~l~~~~~ 186 (202)
+|++|.+.+.
T Consensus 153 l~~~l~~~~~ 162 (164)
T smart00173 153 AFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=187.73 Aligned_cols=160 Identities=21% Similarity=0.311 Sum_probs=127.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+.+ ..++.+.+........ +...+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKF-EGKTILVDFWDTAGQERFQTMHASYYHKAHACILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence 589999999999999999999988753 3455555555444444 45678899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
||++++.++..+..|+..+... .++.|+++|+||+|+.... ..+... ++...+++++++||++|.|++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~------~~~~~~~~~~~~Sa~~~~gv~~l~ 150 (161)
T cd04124 80 FDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFN------FAEKHNLPLYYVSAADGTNVVKLF 150 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHH------HHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999988888777553 3478999999999985321 111111 122335789999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 179 NELYQLILKKR 189 (202)
Q Consensus 179 ~~l~~~~~~~~ 189 (202)
+.+.+.+.+++
T Consensus 151 ~~l~~~~~~~~ 161 (161)
T cd04124 151 QDAIKLAVSYK 161 (161)
T ss_pred HHHHHHHHhcC
Confidence 99998887653
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=193.34 Aligned_cols=162 Identities=22% Similarity=0.359 Sum_probs=131.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+||+++|++|||||||++++.+..+. .+.++.+.++....+.. ++..+.+.+||+||++++...+..+++.+|++|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 58999999999999999999998875 45677776665544433 4567899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++++++.+..|+..+... ...+.|+++|+||+|+.... ...+..... ...+.+++++||++|.|++
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~------~~~~~~~~e~Sa~~~~~v~ 152 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA------KEYGVPFMETSAKTGLNVE 152 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH------HHcCCeEEEEeCCCCCCHH
Confidence 99999999999998888777654 34478999999999996432 222322221 2345689999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 176 EGINELYQLILKKR 189 (202)
Q Consensus 176 ~l~~~l~~~~~~~~ 189 (202)
++|++|.+.+....
T Consensus 153 ~l~~~l~~~~~~~~ 166 (191)
T cd04112 153 LAFTAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987774
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=188.40 Aligned_cols=163 Identities=25% Similarity=0.320 Sum_probs=132.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+++|++|||||||++++.+..+. ...++.+.+.....+.. ++..+.+.+||+||++++......+++.+|++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 45689999999999999999999998875 34566676665555544 45567899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||+++++++..+..|+..+... ..++.|+++|+||.|+.... ......... ...+.+++++||+++.|
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~ 153 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEEGEAFA------KEHGLIFMETSAKTASN 153 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH------HHcCCEEEEEeCCCCCC
Confidence 9999999999999999888877665 34689999999999997432 233333322 23456899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILK 187 (202)
Q Consensus 174 v~~l~~~l~~~~~~ 187 (202)
++++|.++.+.+.+
T Consensus 154 i~~~~~~~~~~~~~ 167 (168)
T cd01866 154 VEEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=195.50 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=127.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+|+|++|||||||+++|.+..|+ .+.||.+..+. ..+.+ ++..+.+.+|||+|++.+..+++.+++++|++|+
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~-~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~ill 78 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEI-DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLI 78 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEE-CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEE
Confidence 379999999999999999999998887 56788875553 33333 5677899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH-HHHHH-------HhCchhhcCcce-EEEEEeee
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI-KQIEK-------LLGLYELNNMHL-YYIQATCA 168 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~-------~~~~~~~~~~~~-~~~~~~Sa 168 (202)
|||++++++|+.+..+|...... ..++.|+++|+||+|+...... ..... ..+...++...+ .+|++|||
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SA 157 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSS 157 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCC
Confidence 99999999999997666554444 3458999999999999653210 00000 000112223344 58999999
Q ss_pred ecCCC-HHHHHHHHHHHHHHH
Q psy1315 169 ITGDG-LHEGINELYQLILKK 188 (202)
Q Consensus 169 ~~~~~-v~~l~~~l~~~~~~~ 188 (202)
+++.| |+++|+.++.+...+
T Consensus 158 k~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 158 RSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred CcCCcCHHHHHHHHHHHHHhc
Confidence 99985 999999999977654
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=186.52 Aligned_cols=159 Identities=22% Similarity=0.290 Sum_probs=125.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++.+..+. .+.++.+..+ ...... ++..+.+.+||+||++++..++..+++++|++++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~ 78 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 78 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEE
Confidence 369999999999999999999988875 4556665433 222223 4556788999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
|||++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+.+++++||++|.|+++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA------KSYGIPYIETSAKTRQGVEE 152 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH------HHhCCeEEEecCCCCCCHHH
Confidence 99999999999998888887765445589999999999997532 222222221 23356899999999999999
Q ss_pred HHHHHHHHH
Q psy1315 177 GINELYQLI 185 (202)
Q Consensus 177 l~~~l~~~~ 185 (202)
+|+++.+.+
T Consensus 153 l~~~l~~~~ 161 (162)
T cd04138 153 AFYTLVREI 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998654
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=195.23 Aligned_cols=166 Identities=22% Similarity=0.323 Sum_probs=136.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.+..+||+++|++|||||||+++|.+..+. .+.++.+.++....+.. .+..+.+.+||++|++++...+..+++.+++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 456799999999999999999999998876 56788887776666655 4567899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+...... ..... +....+++++++||++|.
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~------l~~~~~~~~~e~SA~~g~ 160 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQA------LAEKEGLSFLETSALEAT 160 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHH------HHHHcCCEEEEEeCCCCC
Confidence 99999999999999998888776654 3457999999999998654332 22222 123356899999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
|++++|+++.+.+.+..
T Consensus 161 ~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 161 NVEKAFQTILLEIYHII 177 (216)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887653
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=187.77 Aligned_cols=175 Identities=31% Similarity=0.431 Sum_probs=141.9
Q ss_pred chHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 4 NSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
+.+.++. +-....+.++|+++|.+|||||||++++.+..+..+.||.+.+...... ..+.+.+||+||+..+..
T Consensus 3 ~~~~~~~-~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 3 WFYDILA-SLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAI-----GNIKFTTFDLGGHQQARR 76 (184)
T ss_pred HHHHHHH-HhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEE-----CCEEEEEEECCCCHHHHH
Confidence 4556666 4444566799999999999999999999998776666777665544432 457899999999999999
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc------C
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN------N 157 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~ 157 (202)
.+..++.++|++|+|+|+++++++.....++..+.......+.|+++|+||+|+.......++...+...... .
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~ 156 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVG 156 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccC
Confidence 9999999999999999999999998888888877664344589999999999998777777787777654321 1
Q ss_pred cceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 158 MHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.....+++|||+++.|++++++||...
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhh
Confidence 246679999999999999999999764
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=188.95 Aligned_cols=162 Identities=20% Similarity=0.254 Sum_probs=120.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||+.++..+.+. .+.|+.+..+. ..... ++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 78 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEE-CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEE
Confidence 479999999999999999999998885 55676653332 22333 5567899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHh-------CchhhcCcce-EEEEEee
Q psy1315 98 VIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLL-------GLYELNNMHL-YYIQATC 167 (202)
Q Consensus 98 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~-------~~~~~~~~~~-~~~~~~S 167 (202)
|||++++++|..+.. |+..+... .++.|+++|+||+|+.+... ........ ....++...+ +++++||
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 156 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 156 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEec
Confidence 999999999999875 55544433 34799999999999964321 11111100 0011122223 5899999
Q ss_pred eecCCCHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQL 184 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~ 184 (202)
|++|.|++++|+.+.+.
T Consensus 157 a~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 157 ALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ccccCCHHHHHHHHHHh
Confidence 99999999999998764
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=178.64 Aligned_cols=167 Identities=23% Similarity=0.323 Sum_probs=143.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.++-.+||+++|..|+|||+|++++..+-|+ ....|+|+.+...++.+ +++.+++++|||+|+++|++...+|++.++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev-~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV-NGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE-CCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 5777899999999999999999999999886 67899999999888888 789999999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH-HHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI-KQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
++|+|||++-..+|+-+..|+.++..+ ....+.-|+|+||.|+.+..+. ..+-. .+.......|+++||++-.
T Consensus 82 alilvydiscqpsfdclpewlreie~y-an~kvlkilvgnk~d~~drrevp~qige-----efs~~qdmyfletsakea~ 155 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLADRREVPQQIGE-----EFSEAQDMYFLETSAKEAD 155 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhhhhhhhHHHHH-----HHHHhhhhhhhhhcccchh
Confidence 999999999999999999999988776 4557788999999999876433 22222 2334456779999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKK 188 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~ 188 (202)
|++.+|..+.-.+...
T Consensus 156 nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 156 NVEKLFLDLACRLISE 171 (213)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999887666543
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=185.80 Aligned_cols=155 Identities=34% Similarity=0.563 Sum_probs=131.5
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
|+++|++|||||||++++.+..+. .+.||.+..... + +...+.+.+||+||++.+...+..+++++|++|+|||
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~--i---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVA--I---PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEE--E---eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 799999999999999999988764 567887765432 2 3567899999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeec------CCCH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAIT------GDGL 174 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~v 174 (202)
.+++.++.....|+..+... ..+.|+++|+||+|+........+...+....++...++++++|||++ ++||
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v 154 (164)
T cd04162 77 SADSERLPLARQELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV 154 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence 99999999988888877654 258999999999999887777777666666667667788999999998 9999
Q ss_pred HHHHHHHHH
Q psy1315 175 HEGINELYQ 183 (202)
Q Consensus 175 ~~l~~~l~~ 183 (202)
+++|+.++.
T Consensus 155 ~~~~~~~~~ 163 (164)
T cd04162 155 KDLLSQLIN 163 (164)
T ss_pred HHHHHHHhc
Confidence 999998864
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=186.75 Aligned_cols=160 Identities=26% Similarity=0.383 Sum_probs=130.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+++|++|||||||++++.+..+. .+.|+.+.++....+.. .+..+.+.+||+||++.+..++..+++.++++|
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 3589999999999999999999998875 56788877666655544 455678999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ..++..... ...+++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v 153 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA------EKNGLSFIETSALDGTNV 153 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccccCCHHHHHHHH------HHcCCEEEEEECCCCCCH
Confidence 999999999999999888777664 33468999999999986542 222333322 224568999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 175 HEGINELYQLI 185 (202)
Q Consensus 175 ~~l~~~l~~~~ 185 (202)
+++|+++.+.+
T Consensus 154 ~~l~~~l~~~i 164 (165)
T cd01868 154 EEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=192.12 Aligned_cols=169 Identities=24% Similarity=0.320 Sum_probs=135.1
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
......+||+|+|++|||||||+++|.+..+..+.++.+.++....+.. ++..+.+.+||+||++++..++..+++++|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTV-GGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3566789999999999999999999999888777888887776655544 455688999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHcc-CCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKN-NDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
++|+|||++++++|..+..+|...... ....+.|+++|+||+|+...... ....... ...+++++++||++
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~------~~~~~~~~e~SAk~ 161 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALA------KEHGCLFLECSAKT 161 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH------HHcCCEEEEEeCCC
Confidence 999999999999999988765544332 22346899999999999754332 2222211 22356799999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLILKKR 189 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~ 189 (202)
+.|++++|++|.+.+.+..
T Consensus 162 ~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 162 RENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCHHHHHHHHHHHHHhhh
Confidence 9999999999999887654
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=186.56 Aligned_cols=160 Identities=44% Similarity=0.732 Sum_probs=131.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.++|+++|++|+|||||++++..+.+..+.|+.+.++....+ +.+.+.+||+||++.+...+..+++.+|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVY-----KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEE-----CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 4689999999999999999999988887778888877654433 46889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|+|+++++++.....++..+.......+.|+++|+||+|+.......++...+..... ...+++++++||++|.|++++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~-~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSI-RDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc-cCCceEEEecccCCCCCHHHH
Confidence 9999999999888888877766534457999999999999775555555555442222 234678999999999999999
Q ss_pred HHHHHH
Q psy1315 178 INELYQ 183 (202)
Q Consensus 178 ~~~l~~ 183 (202)
|++|.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=185.85 Aligned_cols=159 Identities=21% Similarity=0.295 Sum_probs=125.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|+|||||++++.+..+. .+.++.+..+. ..... ++..+.+.+||+||++++..++..+++.+|++++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT-KQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE-EEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 579999999999999999999988764 44555543322 22222 4556789999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++.++..+..|+..+.......+.|+++|+||+|+..... ....... ....+++++++||++|.|++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~ 153 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL------ARKLKIPYIETSAKDRLNVD 153 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH------HHHcCCcEEEeeCCCCCCHH
Confidence 999999999999999888877654455899999999999965432 2222222 12335689999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 176 EGINELYQLI 185 (202)
Q Consensus 176 ~l~~~l~~~~ 185 (202)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (164)
T cd04145 154 KAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-32 Score=186.69 Aligned_cols=158 Identities=31% Similarity=0.470 Sum_probs=134.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
||+++|++|||||||+++|.+..++ .+.++.+.......+.. +...+.+.+||++|++.+..+...+++++|++|+||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f 79 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF 79 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999998886 56778777777777766 577889999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|+++++||+.+..|+..+.... ..+.|++||+||.|+.+. ....+.+... ...+.+++++||+++.|+.++
T Consensus 80 d~~~~~S~~~~~~~~~~i~~~~-~~~~~iivvg~K~D~~~~~~v~~~~~~~~~------~~~~~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 80 DVTDEESFENLKKWLEEIQKYK-PEDIPIIVVGNKSDLSDEREVSVEEAQEFA------KELGVPYFEVSAKNGENVKEI 152 (162)
T ss_dssp ETTBHHHHHTHHHHHHHHHHHS-TTTSEEEEEEETTTGGGGSSSCHHHHHHHH------HHTTSEEEEEBTTTTTTHHHH
T ss_pred cccccccccccccccccccccc-cccccceeeeccccccccccchhhHHHHHH------HHhCCEEEEEECCCCCCHHHH
Confidence 9999999999998888877663 357899999999999763 3333444432 344589999999999999999
Q ss_pred HHHHHHHHH
Q psy1315 178 INELYQLIL 186 (202)
Q Consensus 178 ~~~l~~~~~ 186 (202)
|..+++.+.
T Consensus 153 f~~~i~~i~ 161 (162)
T PF00071_consen 153 FQELIRKIL 161 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=184.42 Aligned_cols=158 Identities=35% Similarity=0.530 Sum_probs=132.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
+|+++|++|||||||++++.+.....+.||.+.+...+. ...+.+++||+||++.+...+..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLR-----LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEE-----ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 489999999999999999998743467788887654433 356889999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC--cceEEEEEeeeecC------C
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN--MHLYYIQATCAITG------D 172 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~------~ 172 (202)
++++.++.....|+..+.......+.|+++|+||+|+.+.....++...+....++. ...+++++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999998888887654445899999999999988777777777666555542 24578999999998 8
Q ss_pred CHHHHHHHHHH
Q psy1315 173 GLHEGINELYQ 183 (202)
Q Consensus 173 ~v~~l~~~l~~ 183 (202)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999964
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=186.34 Aligned_cols=160 Identities=25% Similarity=0.337 Sum_probs=126.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+++|++|+|||||++++.++.+.. +.++.+.......+.. ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46899999999999999999999888763 4566665554444433 445578999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+..... ......... ......++++||++|.|+
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v 154 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAE-----KNGMLAVLETSAKESQNV 154 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCcEEEEEECCCCCCH
Confidence 999999999999998888877654 345899999999999975432 222222211 122356899999999999
Q ss_pred HHHHHHHHHH
Q psy1315 175 HEGINELYQL 184 (202)
Q Consensus 175 ~~l~~~l~~~ 184 (202)
+++|+++.+.
T Consensus 155 ~~~~~~l~~~ 164 (165)
T cd01864 155 EEAFLLMATE 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999999864
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=182.44 Aligned_cols=157 Identities=45% Similarity=0.786 Sum_probs=125.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
||+++|++++|||||++++....+..+.|+.+.+..... ...+.+++||+||++.+...+..+++.+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVT-----YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEE-----ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 689999999999999999988877766777776654432 356789999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (202)
++++.++.....++..+.......+.|+++|+||+|+.+.....++...+..... ...+.+++++||+++.|++++|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSEL-KDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCcccc-CCCcEEEEEeeccCCCCHHHHHHH
Confidence 9998888877777766655433457999999999999765544455444432222 234568999999999999999999
Q ss_pred HHH
Q psy1315 181 LYQ 183 (202)
Q Consensus 181 l~~ 183 (202)
|.+
T Consensus 155 l~~ 157 (158)
T cd04151 155 LVN 157 (158)
T ss_pred Hhc
Confidence 875
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=185.82 Aligned_cols=162 Identities=20% Similarity=0.321 Sum_probs=129.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+++|++|||||||++++.+..+.. ..++.+.......+.. ++..+.+.+||+||++++..++..+++.+|++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 457999999999999999999999888864 4667776655444444 56778999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCC---CCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNND---NFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
|+|||+++++++..+..|...+..... ..+.|+++|+||+|+... ....+.+.... .....+++++||++|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~ 156 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR-----ENGDYPYFETSAKDA 156 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH-----HCCCCeEEEEECCCC
Confidence 999999999999999888877665422 247899999999998642 23334444322 122357899999999
Q ss_pred CCHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQL 184 (202)
Q Consensus 172 ~~v~~l~~~l~~~ 184 (202)
.|+.++|+++++.
T Consensus 157 ~~v~~~~~~~~~~ 169 (170)
T cd04116 157 TNVAAAFEEAVRR 169 (170)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999864
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=185.49 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++++++.+. .+.++.+.++.. .... +...+.+.+||+||++++..++..+++.+|++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISC-SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEE-EEEE-CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence 79999999999999999999998875 445666544422 2222 34568899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccC--CCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNN--DNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
||++++++++.+..|+..+.... ...+.|+++|+||+|+..... ..+... ++...++++++|||++|.|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~------~~~~~~~~~~e~SA~~g~~v 153 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA------CATEWNCAFMETSAKTNHNV 153 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH------HHHHhCCcEEEeecCCCCCH
Confidence 99999999999988876554421 225799999999999965332 222222 12234568999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 175 HEGINELYQL 184 (202)
Q Consensus 175 ~~l~~~l~~~ 184 (202)
+++|++|++.
T Consensus 154 ~~~f~~l~~~ 163 (165)
T cd04140 154 QELFQELLNL 163 (165)
T ss_pred HHHHHHHHhc
Confidence 9999998753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=190.45 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=128.9
Q ss_pred EcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 25 LGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 25 ~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
+|++|||||||+++++++.+. .+.+|.|.++....+.. +...+.+.+||++|++++..++..+++++|++|+|||+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~-~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence 699999999999999988886 56788888887776655 5567899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 104 VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 104 ~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
+.+|..+..|+..+... ..+.|+++|+||+|+.......+.. .++...++++++|||++|.||+++|++|.+
T Consensus 80 ~~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~ 151 (200)
T smart00176 80 RVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKDRKVKAKSI------TFHRKKNLQYYDISAKSNYNFEKPFLWLAR 151 (200)
T ss_pred hHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccCCHHHH------HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999888877764 2489999999999986432211111 122345688999999999999999999999
Q ss_pred HHHHH
Q psy1315 184 LILKK 188 (202)
Q Consensus 184 ~~~~~ 188 (202)
.+.+.
T Consensus 152 ~i~~~ 156 (200)
T smart00176 152 KLIGD 156 (200)
T ss_pred HHHhc
Confidence 88654
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=185.29 Aligned_cols=157 Identities=22% Similarity=0.368 Sum_probs=127.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. .+.++.+..+....... ++..+.+++||+||++.+...+..+++++|++|+|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV-GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence 58999999999999999999998875 45666666665555544 45668899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||+++++++..+..|+..+... ..++.|+++|+||+|+.... ...+..... ...+++++++||+++.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 80 YDITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFA------QENGLLFLETSALTGENVEE 152 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHH------HHcCCEEEEEECCCCCCHHH
Confidence 9999999999998887766543 35689999999999996532 223333322 22347899999999999999
Q ss_pred HHHHHHHH
Q psy1315 177 GINELYQL 184 (202)
Q Consensus 177 l~~~l~~~ 184 (202)
+|+++.+.
T Consensus 153 ~~~~~~~~ 160 (161)
T cd04113 153 AFLKCARS 160 (161)
T ss_pred HHHHHHHh
Confidence 99999875
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=185.45 Aligned_cols=157 Identities=20% Similarity=0.292 Sum_probs=125.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccc-cccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIG-KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+||+++|++|+|||||++++.++.+. .+.++.+..+....+... ....+.+.+||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999998775 456777766644444331 2556889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||+++++++..+..|+..+... ..+.|+++|+||+|+..... ..+..... ...+++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~ 152 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALA------KRLQLPLFRTSVKDDFNVT 152 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHH------HHcCCeEEEEECCCCCCHH
Confidence 99999999999998888776543 34899999999999965433 22222222 2345689999999999999
Q ss_pred HHHHHHHHH
Q psy1315 176 EGINELYQL 184 (202)
Q Consensus 176 ~l~~~l~~~ 184 (202)
++|++|.+.
T Consensus 153 ~l~~~l~~~ 161 (162)
T cd04106 153 ELFEYLAEK 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998754
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=186.41 Aligned_cols=160 Identities=24% Similarity=0.375 Sum_probs=129.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCch-hhHHhhhcCCCEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-PLWKSYTRCTDGII 96 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~d~~i 96 (202)
.++|+++|++|||||||++++....+. .+.++.+.......+.. ++..+.+.+||+||++++. .++..+++++|++|
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 579999999999999999999988876 45677776665555544 4567899999999998876 57888999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeec---C
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAIT---G 171 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~ 171 (202)
+|||+++++++..+..|...+.......+.|+++|+||+|+..... ....+... ...++++++|||++ +
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~~ 154 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA------DAHSMPLFETSAKDPSEN 154 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH------HHcCCcEEEEeccCCcCC
Confidence 9999999999999998888777654456899999999999865433 22222222 23457899999999 8
Q ss_pred CCHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLI 185 (202)
Q Consensus 172 ~~v~~l~~~l~~~~ 185 (202)
.|++++|..+++.+
T Consensus 155 ~~i~~~f~~l~~~~ 168 (170)
T cd04115 155 DHVEAIFMTLAHKL 168 (170)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=192.05 Aligned_cols=166 Identities=21% Similarity=0.211 Sum_probs=125.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
.||+++|++|||||||+++|.++.+. .+.||.+..+.. .... ++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv 78 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFV-DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLC 78 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEE-CCEEEEEEEEECCCChhccccccccccCCCEEEEE
Confidence 38999999999999999999999886 456776655432 2222 45568999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHh--------Cchhhc-CcceEEEEEeee
Q psy1315 99 IDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL--------GLYELN-NMHLYYIQATCA 168 (202)
Q Consensus 99 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~Sa 168 (202)
||++++++|+.+.. |+..+... ..+.|+++|+||+|+............. ....++ ....+++++|||
T Consensus 79 ~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 156 (189)
T cd04134 79 FSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSA 156 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccC
Confidence 99999999998864 55555443 3489999999999997653322110000 001111 123378999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++|.|++++|+++.+.+...+
T Consensus 157 k~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 157 KLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CcCCCHHHHHHHHHHHHhccc
Confidence 999999999999999887443
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=190.67 Aligned_cols=161 Identities=22% Similarity=0.288 Sum_probs=129.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+||+++|++|+|||||+++|.++.+. .+.++.+..+....+.. ++..+.+.+||++|++++..++..+++++|++|+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 58999999999999999999998885 36778876665544544 4567889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc------CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI------QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
|||++++.+++.+..|+..+... ..+.|+++|+||+|+.... ...+...+ ....+.+++++||+++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~~ 151 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDF------ADEIKAQHFETSSKTG 151 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHH------HHHcCCeEEEEeCCCC
Confidence 99999999999988777766553 3478999999999986432 11122222 1233567899999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|+++.+.+.++.
T Consensus 152 ~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 152 QNVDELFQKVAEDFVSRA 169 (193)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999887653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-31 Score=190.19 Aligned_cols=165 Identities=25% Similarity=0.321 Sum_probs=133.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+++|++|+|||||++++.+..+. .+.++.+.++....+.. ++..+.+.+||++|++.+..++..+++.+|++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45799999999999999999999988775 45677777665544444 45567899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||+++++++..+..|+..+... .....|+++|+||+|+.+.. ..++.+... ...+++++++||+++.|
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~ 155 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFA------KEHGLIFMEASAKTAQN 155 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHH------HHcCCEEEEEeCCCCCC
Confidence 9999999999999998888776554 34579999999999997643 333334332 23457899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKKR 189 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~ 189 (202)
++++|+++++.+.++.
T Consensus 156 v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 156 VEEAFIKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887543
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-31 Score=182.33 Aligned_cols=157 Identities=42% Similarity=0.652 Sum_probs=125.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC--CCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY--LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+|+++|++|||||||++++.+..+ ..+.||.+.+.... ....+.+.+||+||++++...+..+++++|++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF-----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE-----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence 589999999999999999998753 35678887655443 23568899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccC--CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNN--DNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|++++.++.....|+..+.... ...+.|+++|+||+|+.+.....++...+..... ....++++++||++|.|+++
T Consensus 76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~-~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENI-KDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccc-cCceEEEEEeeCCCCCchHH
Confidence 99999999988887777665532 1247999999999999776555555554443222 23356799999999999999
Q ss_pred HHHHHHH
Q psy1315 177 GINELYQ 183 (202)
Q Consensus 177 l~~~l~~ 183 (202)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999865
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.8e-32 Score=177.34 Aligned_cols=170 Identities=24% Similarity=0.346 Sum_probs=145.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...++.+++|+.-+|||||++.+..+++++ ..||.|+.+..-.+.+..+..+++++|||+|+++++++..+|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 356899999999999999999999999984 4799999888877777678889999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCC-CCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNF-NVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
++|||++|.+||+.+..|+.+.......+ ..-+.+||+|+|+.+.......+. ..++..++..|+++||++|.||
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEa----EklAa~hgM~FVETSak~g~NV 161 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEA----EKLAASHGMAFVETSAKNGCNV 161 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHH----HHHHHhcCceEEEecccCCCcH
Confidence 99999999999999999999887776644 555678999999987655433222 1234578889999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy1315 175 HEGINELYQLILKKRK 190 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~~ 190 (202)
++.|..|.+.+...-.
T Consensus 162 eEAF~mlaqeIf~~i~ 177 (213)
T KOG0091|consen 162 EEAFDMLAQEIFQAIQ 177 (213)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876544
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=184.25 Aligned_cols=160 Identities=18% Similarity=0.260 Sum_probs=126.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC--CCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD--QYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+||+++|++|||||||++++... .+. .+.++.+..+.........+..+.+.+||+||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 443 567777777655555443456789999999999998999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+.......... .+....+.+++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQ----AFAQANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHH----HHHHHcCCeEEEEeCCCCCChHH
Confidence 9999999999998888887766542 47999999999999655332221110 11122346799999999999999
Q ss_pred HHHHHHHHH
Q psy1315 177 GINELYQLI 185 (202)
Q Consensus 177 l~~~l~~~~ 185 (202)
+|+.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998864
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=185.37 Aligned_cols=165 Identities=37% Similarity=0.563 Sum_probs=135.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
...+..+|+++|++|||||||++++.+..+..+.|+.+.+...+.+ ....+.+||+||++.+...+..+++.+|+
T Consensus 15 ~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~-----~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ 89 (190)
T cd00879 15 LYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTI-----GNIKFKTFDLGGHEQARRLWKDYFPEVDG 89 (190)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEE-----CCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 3467899999999999999999999988877777777766554443 35789999999999888899999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhh----------cCcceEEEE
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYEL----------NNMHLYYIQ 164 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 164 (202)
+++|+|+++.+++.....++..+.......+.|+++|+||+|+.......+++..+..... ......+++
T Consensus 90 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 90 IVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 9999999999899888888888876544457999999999999876666777776654222 112456799
Q ss_pred EeeeecCCCHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~ 184 (202)
+|||++++|++++|++|.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999875
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-31 Score=182.39 Aligned_cols=159 Identities=26% Similarity=0.358 Sum_probs=130.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++.+..+.. +.++.+..+....... +...+.+.+||+||++++...+..+++++|++|+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL-DDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 4799999999999999999999998875 6777776665555544 5667899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||+++++++.....|+..+.... ..+.|+++|+||+|+.... ......... ...+.+++++||++|.|+.
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYA------DENGLLFFETSAKTGENVN 152 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHH------HHcCCEEEEEECCCCCCHH
Confidence 999999999999998888776653 3689999999999987432 333333322 2234789999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 176 EGINELYQLI 185 (202)
Q Consensus 176 ~l~~~l~~~~ 185 (202)
++|++|.+.+
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd01860 153 ELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHh
Confidence 9999998875
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-31 Score=181.25 Aligned_cols=152 Identities=17% Similarity=0.243 Sum_probs=114.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++....+... .|+.+..... +.. ++..+.+.+||++|++. ..+++++|++++|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~--i~~-~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv 72 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKE--VLV-DGQSHLLLIRDEGGAPD-----AQFASWVDAVIFV 72 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEE--EEE-CCEEEEEEEEECCCCCc-----hhHHhcCCEEEEE
Confidence 5899999999999999999998887643 3433332222 333 45668899999999865 3466889999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
||++++++|+.+..|+..+.......+.|+++|+||+|+... .. ..+.+...+ ...+++|++|||++|.||
T Consensus 73 ~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 73 FSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA-----DMKRCSYYETCATYGLNV 147 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH-----HhCCCcEEEEecCCCCCH
Confidence 999999999999989888876644467899999999998532 21 111212110 223578999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 175 HEGINELYQL 184 (202)
Q Consensus 175 ~~l~~~l~~~ 184 (202)
+++|+.+.+.
T Consensus 148 ~~~f~~~~~~ 157 (158)
T cd04103 148 ERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999998754
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-31 Score=182.37 Aligned_cols=160 Identities=29% Similarity=0.405 Sum_probs=129.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. ...++.+.++....+.. ++..+.+.+||+||++.+......+++.+|++|+|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999988875 44566666665555544 45567899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||++++++++.+..|+..+... ..++.|+++|+||+|+.... ..+...... ...+++++++||+++.|+++
T Consensus 80 ~d~~~~~s~~~~~~~l~~~~~~-~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 80 YDITNRESFENLKNWLKELREY-ADPNVVIMLVGNKSDLEDQRQVSREEAEAFA------EEHGLPFFETSAKTNTNVEE 152 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcccccCCCHHHHHHHH------HHcCCeEEEEeCCCCCCHHH
Confidence 9999999999998887776665 23589999999999987532 333333332 23457799999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 177 GINELYQLILK 187 (202)
Q Consensus 177 l~~~l~~~~~~ 187 (202)
+++++.+.+.+
T Consensus 153 l~~~i~~~~~~ 163 (164)
T smart00175 153 AFEELAREILK 163 (164)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
|
Rab GTPases are implicated in vesicle trafficking. |
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=178.12 Aligned_cols=180 Identities=50% Similarity=0.824 Sum_probs=163.9
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||...++++. ....++..+|+++|-.++||||++++|...+...+.||+|++...+.+ ..+.|++||.+|+++
T Consensus 1 MG~~~s~~~~--~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y-----kn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 1 MGLIFSKLFS--GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY-----KNISFTVWDVGGQEK 73 (181)
T ss_pred Ccchhhhhhh--hccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE-----cceEEEEEecCCCcc
Confidence 8888888765 445778999999999999999999999999998889999999999987 488999999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
++..|..|+++.+++|+|+|.++++.+......+..+.........|+++.+||.|+++.....++.+.+.+..++. ..
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~ 152 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RN 152 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CC
Confidence 99999999999999999999999999999999999998886677999999999999999999999999998877744 77
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+.+..|+|.+|+|+.|.++|+.+.+..+
T Consensus 153 w~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 153 WHIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cEEeeccccccccHHHHHHHHHHHHhcc
Confidence 8899999999999999999999887643
|
|
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=180.03 Aligned_cols=158 Identities=27% Similarity=0.405 Sum_probs=129.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. .+.++.+.++....+.. ....+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence 58999999999999999999998875 46777777666555444 45668899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
||+++++++..+..|+..+.......+.|+++|+||+|+... ....+..... ...+++++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 80 YDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA------RKHNMLFIETSAKTRDGVQQA 153 (161)
T ss_pred EECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH------HHcCCEEEEEecCCCCCHHHH
Confidence 999999999999888877766655668999999999999743 2333333322 234678999999999999999
Q ss_pred HHHHHHH
Q psy1315 178 INELYQL 184 (202)
Q Consensus 178 ~~~l~~~ 184 (202)
++++.+.
T Consensus 154 ~~~~~~~ 160 (161)
T cd01863 154 FEELVEK 160 (161)
T ss_pred HHHHHHh
Confidence 9998865
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=178.76 Aligned_cols=157 Identities=52% Similarity=0.876 Sum_probs=132.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
||+++|.+|||||||++++.+.....+.++.+.+.....+ ..+.+.+||+||++.+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEY-----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEE-----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999999876778888877666543 36789999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (202)
+++++++.....++..+.......+.|+++|+||+|+.......+....+..... ....++++++||++|.|++++|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~~~~~ 154 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKI-LGRRWHIQPCSAVTGDGLDEGLDW 154 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhc-cCCcEEEEEeeCCCCCCHHHHHHH
Confidence 9999999999888888877655568999999999999876655566655543211 335679999999999999999999
Q ss_pred HHH
Q psy1315 181 LYQ 183 (202)
Q Consensus 181 l~~ 183 (202)
|..
T Consensus 155 l~~ 157 (158)
T cd00878 155 LLQ 157 (158)
T ss_pred Hhh
Confidence 875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=181.35 Aligned_cols=157 Identities=24% Similarity=0.332 Sum_probs=126.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++++..+. .+.++.+..+....+.. ++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999998875 44666666555555544 34557899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||+++++++..+..|+..+... ...+.|+++|+||+|+.... ......... ...+++++++||+++.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 80 YDITNRQSFDNTDKWIDDVRDE-RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKA------KELNAMFIETSAKAGHNVKE 152 (161)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEEChhccccCccCHHHHHHHH------HHhCCEEEEEeCCCCCCHHH
Confidence 9999999999999888877655 23379999999999995432 222222221 23457899999999999999
Q ss_pred HHHHHHHH
Q psy1315 177 GINELYQL 184 (202)
Q Consensus 177 l~~~l~~~ 184 (202)
+++++.+.
T Consensus 153 l~~~i~~~ 160 (161)
T cd01861 153 LFRKIASA 160 (161)
T ss_pred HHHHHHHh
Confidence 99999875
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=190.78 Aligned_cols=160 Identities=23% Similarity=0.291 Sum_probs=126.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++++++.+. .+.+|.+ .+....+.+ ++..+.+.+|||+|++.+..++..++..+|++|+|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSI-RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEE-CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 58999999999999999999998886 4566665 223333333 56678999999999999988888899999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccC--------CCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNN--------DNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~--------~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
||++++++|+.+..|+..+.... ...+.|+++|+||+|+... ....++...+. ...++.++++||
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~-----~~~~~~~~evSA 153 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG-----GDENCAYFEVSA 153 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH-----hcCCCEEEEEeC
Confidence 99999999999988887775431 2347999999999999752 33344444332 123568999999
Q ss_pred ecCCCHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLIL 186 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~ 186 (202)
++|.|++++|++|.....
T Consensus 154 ktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 154 KKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 999999999999998653
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=186.09 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCch--------hhHHhhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--------PLWKSYTR 90 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~ 90 (202)
+||+++|++|||||||++++.+..+. .+.|+.+.......... ++..+.+++|||||...+. .....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 58999999999999999999998886 45677664444333333 4566889999999965432 12334578
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccC--CCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEe
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNN--DNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.+|++|+|||++++++|+.+..|+..+.... ...+.|+++|+||+|+..... ....+... .+..++++++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~e~ 154 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV-----RKSWKCGYLEC 154 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH-----HHhcCCcEEEe
Confidence 8999999999999999999988887776542 245799999999999965422 22222211 12346789999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 167 CAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
||++|.|++++|+.+++.+..+.+
T Consensus 155 Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 155 SAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhhccCC
Confidence 999999999999999988876544
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=188.29 Aligned_cols=161 Identities=18% Similarity=0.151 Sum_probs=122.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhc-CCCEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTR-CTDGII 96 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~-~~d~~i 96 (202)
+||+++|++|||||||+++|..+.+. .+.++.+.......+.+ ++..+.+.+||+||++ ......++. ++|+++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSV-DGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFV 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEE-CCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEE
Confidence 58999999999999999999888774 44555543443333333 4567889999999987 234445666 899999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++.+|..+..|+..+.......+.|+++|+||+|+...... .+.... +...+++++++||+++.|+
T Consensus 78 lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~------a~~~~~~~~e~SA~~~~gv 151 (221)
T cd04148 78 VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC------AVVFDCKFIETSAGLQHNV 151 (221)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH------HHHcCCeEEEecCCCCCCH
Confidence 99999999999999888887766544458999999999999654332 222221 1233568999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKKR 189 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~ 189 (202)
+++|+++++.+...+
T Consensus 152 ~~l~~~l~~~~~~~~ 166 (221)
T cd04148 152 DELLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999887544
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=180.01 Aligned_cols=163 Identities=20% Similarity=0.287 Sum_probs=127.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. ...++.+.++....... .+..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 79 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence 58999999999999999999998875 34566665554444433 45668899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCC---CCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNND---NFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
||+++++++.....|...+..... ..+.|+++|+||+|+..+ ........... .....+++++||++|.|
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 154 (172)
T cd01862 80 YDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ-----SNGNIPYFETSAKEAIN 154 (172)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCceEEEEECCCCCC
Confidence 999999999888777766554422 337999999999999742 23333333221 12237899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKK 188 (202)
Q Consensus 174 v~~l~~~l~~~~~~~ 188 (202)
++++|+++.+.+.+.
T Consensus 155 v~~l~~~i~~~~~~~ 169 (172)
T cd01862 155 VEQAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988765
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=183.46 Aligned_cols=161 Identities=22% Similarity=0.235 Sum_probs=119.3
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
|+++|++|||||||++++.+..+.. +.++.+..+. ..... ++..+.+.+|||||++.+..++..+++++|++|+|||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 78 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEV-DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFS 78 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEE-CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEE
Confidence 5899999999999999999988863 4555443332 23333 4567889999999999999999999999999999999
Q ss_pred CCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH-HHHHH-------hCchhhcCcce-EEEEEeeeec
Q psy1315 101 STDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQIK-QIEKL-------LGLYELNNMHL-YYIQATCAIT 170 (202)
Q Consensus 101 ~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~-------~~~~~~~~~~~-~~~~~~Sa~~ 170 (202)
++++++|+.+.. |+..+... .++.|+++|+||+|+....... ..... .....++...+ .++++|||++
T Consensus 79 ~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 156 (174)
T smart00174 79 VDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALT 156 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCC
Confidence 999999999875 55555443 3589999999999996532110 00000 00011222333 4899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLIL 186 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~ 186 (202)
|.|++++|+.+++.+.
T Consensus 157 ~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 157 QEGVREVFEEAIRAAL 172 (174)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999998764
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=180.16 Aligned_cols=160 Identities=21% Similarity=0.305 Sum_probs=125.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
++||+++|.+|||||||++++.++.+. .+.++.+..+ ...... ++..+.+.+||+||++.+..++..+++.++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vl 78 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEI-DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLL 78 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEE-CCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEE
Confidence 478999999999999999999988875 4456655433 233223 4566889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcc-eEEEEEeeeecCCCH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMH-LYYIQATCAITGDGL 174 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v 174 (202)
|||++++++++....|...+.......+.|+++++||+|+...... .+..... ... ..+++++||+++.|+
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~~SA~~~~~i 152 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLS------QQWGNVPFYETSARKRTNV 152 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHH------HHcCCceEEEeeCCCCCCH
Confidence 9999999999999888877766444558999999999998654322 2222211 122 378999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 175 HEGINELYQLIL 186 (202)
Q Consensus 175 ~~l~~~l~~~~~ 186 (202)
+++|+++...+.
T Consensus 153 ~~~f~~i~~~~~ 164 (168)
T cd04177 153 DEVFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=185.21 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=113.6
Q ss_pred ccEEEEEcCCCCCHHHHHH-HhhcCCC------CCccccccc-eeeEee--------cccccccceEEEEEEcCCCCCch
Q psy1315 19 SVHIVMLGLDSAGKTTALY-RLKFDQY------LNTVPTIGF-NCEKVK--------GQIGKCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~-~l~~~~~------~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~D~~G~~~~~ 82 (202)
.+||+++|++|||||||+. ++.+..+ ..+.||.+. ..+... ..+ ++..+.+.+|||+|++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~-- 78 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHD-- 78 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChh--
Confidence 5799999999999999995 5554433 234577652 222111 122 56679999999999875
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCC---------------------
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNA--------------------- 140 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------------- 140 (202)
.....+++++|++|+|||++++.||+.+.. |+..+... .++.|+++|+||+|+.+.
T Consensus 79 ~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
T cd01873 79 KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADI 156 (195)
T ss_pred hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCc
Confidence 355678899999999999999999999975 65555443 247899999999998642
Q ss_pred cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
...++.+ .++...+++|++|||++|.||+++|+.++++
T Consensus 157 V~~~e~~------~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 157 LPPETGR------AVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cCHHHHH------HHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 1122222 2334556799999999999999999998864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=177.58 Aligned_cols=169 Identities=41% Similarity=0.698 Sum_probs=135.8
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHh
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS 87 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 87 (202)
.+++..+. .+.++|+++|++|||||||++++.+..+..+.++.|.+...+.. ....+.+||+||+..+...+..
T Consensus 4 ~~~~~~~~-~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~-----~~~~~~~~D~~G~~~~~~~~~~ 77 (173)
T cd04155 4 LLRKLRKS-SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQS-----DGFKLNVWDIGGQRAIRPYWRN 77 (173)
T ss_pred HHHHhhcc-CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEE-----CCEEEEEEECCCCHHHHHHHHH
Confidence 34445444 34899999999999999999999998777777888876665554 3467999999999888888999
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++.+|++++|+|+++..++.....++..........+.|+++++||+|+........+...+..... .....+++++|
T Consensus 78 ~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~S 156 (173)
T cd04155 78 YFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDL-RDRTWHIQACS 156 (173)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCccc-CCCeEEEEEeE
Confidence 99999999999999998888888878777766544557999999999999776656666665554333 22345788999
Q ss_pred eecCCCHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQ 183 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~ 183 (202)
|++|+|++++|+||.+
T Consensus 157 a~~~~gi~~~~~~l~~ 172 (173)
T cd04155 157 AKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCCHHHHHHHHhc
Confidence 9999999999999875
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=180.89 Aligned_cols=160 Identities=19% Similarity=0.113 Sum_probs=124.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.+.+||+++|++|||||||++++.+..+. .+.||.+..+....+.. ++..+.+.+||++|++.+..++..+++++|+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 35789999999999999999999998885 56788776655443433 4566789999999999998999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceE-EEEEeeeecC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLY-YIQATCAITG 171 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 171 (202)
+|+|||++++.+++.+..|+..+.. ..+.|+++|+||+|+.+.... ...+... ...+. .++++||+++
T Consensus 81 ~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~ 151 (169)
T cd01892 81 ACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFC------RKLGLPPPLHFSSKLG 151 (169)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHH------HHcCCCCCEEEEeccC
Confidence 9999999999999988877765432 237999999999998654221 1112211 11222 3589999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLIL 186 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~ 186 (202)
.|++++|+.+.+.+.
T Consensus 152 ~~v~~lf~~l~~~~~ 166 (169)
T cd01892 152 DSSNELFTKLATAAQ 166 (169)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999999998765
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=180.01 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=117.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+|++++|++|+|||||++++.+..+.. +.+|. .......... ++..+.+.+||+||++++..++..+++++|++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v 78 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEE-CCEEEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence 689999999999999999999888764 44443 3333334444 45668899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCc--------------CHHHHHHHhCchhhcCcce-EE
Q psy1315 99 IDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAI--------------QIKQIEKLLGLYELNNMHL-YY 162 (202)
Q Consensus 99 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~-~~ 162 (202)
||++++++|+.+.. |+..+... .++.|+++|+||+|+.... ...+... ++...+ .+
T Consensus 79 ~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~------~a~~~~~~~ 150 (173)
T cd04130 79 FSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKA------LAEKIGACE 150 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHH------HHHHhCCCe
Confidence 99999999998864 55444432 3479999999999986432 1111221 222233 48
Q ss_pred EEEeeeecCCCHHHHHHHHHH
Q psy1315 163 IQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 163 ~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
+++|||++|.|++++|+.++-
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-32 Score=177.33 Aligned_cols=172 Identities=22% Similarity=0.321 Sum_probs=146.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccc--------cccceEEEEEEcCCCCCchhhH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIG--------KCKGINFLIWDVGGQEKLRPLW 85 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~D~~G~~~~~~~~ 85 (202)
.+...+|++.+|++|+||||++.++..++|.. -..|.|+.+....+... ....+.+++|||+|+++|+++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 45677899999999999999999999998864 46777766655444331 2345789999999999999999
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
..+++.+-+++++||+++..||.++++|+..+....+..+.-+|+|+||+|+.+.....+.+. ..++...++|+|+
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa----~~La~kyglPYfE 160 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQA----AALADKYGLPYFE 160 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHH----HHHHHHhCCCeee
Confidence 999999999999999999999999999999998888888999999999999988766655554 2455678999999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 166 TCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+||-+|.||++..+.+.+.+.++-.
T Consensus 161 TSA~tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred eccccCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887643
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=180.60 Aligned_cols=163 Identities=22% Similarity=0.232 Sum_probs=119.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|+|||||++++.++.+. .+.++.+..+ ...+.. ++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 78 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 78 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEE-CCEEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence 58999999999999999999998875 4455544222 223333 45567899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhC--------chhhcC-cceEEEEEeeee
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG--------LYELNN-MHLYYIQATCAI 169 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~Sa~ 169 (202)
||++++++|+.....|....... .++.|+++|+||+|+.+............ ...++. ....++++|||+
T Consensus 79 ~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 157 (174)
T cd04135 79 FSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL 157 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 99999999998875444444432 56899999999999865321111000000 001111 223479999999
Q ss_pred cCCCHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLI 185 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~ 185 (202)
+|.|++++|+.+++.+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999998765
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=178.86 Aligned_cols=158 Identities=21% Similarity=0.289 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCC-chhhHHhhhcCCCEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-LRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~d~~ilv 98 (202)
||+++|++|||||||+++++...+. .+.++.+..+ ...... ++..+.+.+||+||++. .......+++.+|++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTI-DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEE-CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 6899999999999999999987775 4445543222 222222 55678899999999885 345677888999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC-CCH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG-DGL 174 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~v 174 (202)
||++++++|+.+..|+..+..... ..+.|+++|+||+|+.... ...+..... ...+.+++++||+++ .|+
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~e~Sa~~~~~~v 152 (165)
T cd04146 79 YSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA------SELGCLFFEVSAAEDYDGV 152 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH------HHcCCEEEEeCCCCCchhH
Confidence 999999999999888776665422 4479999999999986442 222222221 223468999999999 599
Q ss_pred HHHHHHHHHHHH
Q psy1315 175 HEGINELYQLIL 186 (202)
Q Consensus 175 ~~l~~~l~~~~~ 186 (202)
+++|+++.+.+.
T Consensus 153 ~~~f~~l~~~~~ 164 (165)
T cd04146 153 HSVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988664
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=175.27 Aligned_cols=159 Identities=21% Similarity=0.346 Sum_probs=126.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. ...++.+..+... ... ++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVL-DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEE-EEE-CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence 58999999999999999999988775 3444444332222 222 45678899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|++++.++.....|+..+.......+.|+++|+||+|+... .......... ...+.+++++||+++.|+++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~ 152 (164)
T cd04139 79 FSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA------RQWGVPYVETSAKTRQNVEK 152 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH------HHhCCeEEEeeCCCCCCHHH
Confidence 999999999999988888877644558999999999999762 2233322222 22356899999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 177 GINELYQLIL 186 (202)
Q Consensus 177 l~~~l~~~~~ 186 (202)
+|+++.+.+.
T Consensus 153 l~~~l~~~~~ 162 (164)
T cd04139 153 AFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=176.03 Aligned_cols=163 Identities=18% Similarity=0.235 Sum_probs=118.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
+||+++|++|||||||++++.++.++...++..... ...... ....+.+.+||+||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADV-TPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-Eeeeee-cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999998865443322111 222222 456689999999999888888888889999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce-EEEEEeeeecCCCHHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL-YYIQATCAITGDGLHEGI 178 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~ 178 (202)
|++++.+++.+..+|....... ..+.|+++|+||+|+.+............. ....... .++++|||+++.|++++|
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~-~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRL-GVKVPIILVGNKSDLRDGSSQAGLEEEMLP-IMNEFREIETCVECSAKTLINVSEVF 156 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhcccccchhHHHHHHHH-HHHHHhcccEEEEeccccccCHHHHH
Confidence 9999999999865554444432 237999999999999765442111111100 0001111 379999999999999999
Q ss_pred HHHHHHHH
Q psy1315 179 NELYQLIL 186 (202)
Q Consensus 179 ~~l~~~~~ 186 (202)
+.+...+.
T Consensus 157 ~~~~~~~~ 164 (166)
T cd01893 157 YYAQKAVL 164 (166)
T ss_pred HHHHHHhc
Confidence 99988765
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=175.17 Aligned_cols=158 Identities=41% Similarity=0.615 Sum_probs=124.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC-------CCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY-------LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
+|+++|++|+|||||++++.+... ..+.+|.+.....+.+ +...+.+||+||++.+...+..+++.+|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 75 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-----GNARLKFWDLGGQESLRSLWDKYYAECH 75 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-----CCEEEEEEECCCChhhHHHHHHHhCCCC
Confidence 589999999999999999976432 1335555555544443 3678999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchh-hcCcceEEEEEeeeecCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYE-LNNMHLYYIQATCAITGD 172 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~ 172 (202)
++++|+|+++++++.....++..+.......+.|+++|+||+|+.......+....+.... .......+++++||++|.
T Consensus 76 ~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 155 (167)
T cd04160 76 AIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGT 155 (167)
T ss_pred EEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCc
Confidence 9999999999888888888888877654456899999999999977666555555544221 112346789999999999
Q ss_pred CHHHHHHHHHH
Q psy1315 173 GLHEGINELYQ 183 (202)
Q Consensus 173 ~v~~l~~~l~~ 183 (202)
|+++++++|.+
T Consensus 156 gv~e~~~~l~~ 166 (167)
T cd04160 156 GVREGIEWLVE 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=174.80 Aligned_cols=158 Identities=27% Similarity=0.325 Sum_probs=123.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|+|||||++++++..+.. ..++............ .+..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI-GGKRIDLAIWDTAGQERYHALGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEE-CCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence 589999999999999999999887753 3444444443333333 34557899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||+++++++.....|+..+.... ..+.|+++|+||+|+..... ........ ...+.+++++|++++.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 80 YDITDADSFQKVKKWIKELKQMR-GNNISLVIVGNKIDLERQRVVSKSEAEEYA------KSVGAKHFETSAKTGKGIEE 152 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH------HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999888877766553 33799999999999975432 22333322 22356789999999999999
Q ss_pred HHHHHHHHH
Q psy1315 177 GINELYQLI 185 (202)
Q Consensus 177 l~~~l~~~~ 185 (202)
+++++.+.+
T Consensus 153 ~~~~l~~~~ 161 (162)
T cd04123 153 LFLSLAKRM 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998764
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=172.31 Aligned_cols=155 Identities=28% Similarity=0.425 Sum_probs=128.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+... .++.+.++....... ....+.+.+||+||++.+...+..+++++|++|+|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v 79 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI-DGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILV 79 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE-CCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 5899999999999999999999988754 777787777776655 44568899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC--CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP--NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|+++++++..+..|+..+... .....|+++|+||+|+. .....++..... ...+.+++++||+++.|+++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 80 YDITNRESFENLDKWLKELKEY-APENIPIILVGNKIDLEDQRQVSTEEAQQFA------KENGLLFFETSAKTGENVEE 152 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccccccccccHHHHHHHH------HHcCCeEEEEecCCCCCHHH
Confidence 9999999999999887777665 33579999999999995 333444444433 23567899999999999999
Q ss_pred HHHHHH
Q psy1315 177 GINELY 182 (202)
Q Consensus 177 l~~~l~ 182 (202)
++++|.
T Consensus 153 ~~~~i~ 158 (159)
T cd00154 153 LFQSLA 158 (159)
T ss_pred HHHHHh
Confidence 999986
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=173.94 Aligned_cols=163 Identities=25% Similarity=0.304 Sum_probs=125.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
++..++|+++|++|||||||++++.+..+. ...++.+.......+.. .+..+.+.+||+||++.+...+..++..+|+
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 82 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRSITQSYYRSANA 82 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 456799999999999999999999977665 44566665444444433 4556789999999999999998999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH-HHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK-QIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
+++|||++++.++..+..|+..+... ...+.|+++|+||+|+....... ..... +......+++++||++|.|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~-----~~~~~~~~~~~~Sa~~~~g 156 (169)
T cd04114 83 LILTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEE-----FSDAQDMYYLETSAKESDN 156 (169)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHH-----HHHHcCCeEEEeeCCCCCC
Confidence 99999999999999888777665443 33478999999999986543321 21111 1122346799999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLI 185 (202)
Q Consensus 174 v~~l~~~l~~~~ 185 (202)
++++|++|.+.+
T Consensus 157 v~~l~~~i~~~~ 168 (169)
T cd04114 157 VEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=169.33 Aligned_cols=156 Identities=28% Similarity=0.552 Sum_probs=126.7
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
|+++|++|||||||++++.+..+. .+.|+.+........ ..+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTK-----GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEE-----CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 799999999999999999998875 567777766654432 34789999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (202)
++++.++.....++..+.......+.|+++|+||+|+.+..........+..... ....++++++|++++.|+++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSI-TDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccc-cCCceEEEEEEeccCCChHHHHHH
Confidence 9998889888888887766544458899999999998776555444444432222 234578999999999999999999
Q ss_pred HHH
Q psy1315 181 LYQ 183 (202)
Q Consensus 181 l~~ 183 (202)
+.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=178.29 Aligned_cols=164 Identities=24% Similarity=0.281 Sum_probs=138.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+++|.+|+|||+|..++++..|. .+.||++ +.+.....+ ++..+.+.|+||+|++++..+...+++++|+++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v-~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~ 79 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTV-DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFL 79 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEE-CCEEEEEEEEcCCCcccChHHHHHhhccCcEEE
Confidence 4689999999999999999999999997 5678887 344444444 578889999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+||+++++.||+.+..++..+.+.......|+++||||+|+..... .++-+.. +..+.++|+++||+.+.++
T Consensus 80 lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l------a~~~~~~f~E~Sak~~~~v 153 (196)
T KOG0395|consen 80 LVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL------ARSWGCAFIETSAKLNYNV 153 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH------HHhcCCcEEEeeccCCcCH
Confidence 9999999999999999999886665666789999999999987433 3332332 3566788999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKKR 189 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~ 189 (202)
+++|..|.+.+...+
T Consensus 154 ~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 154 DEVFYELVREIRLPR 168 (196)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999988733
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=178.83 Aligned_cols=161 Identities=20% Similarity=0.247 Sum_probs=123.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
||+++|++|||||||++++.+..+.. +.++.+ ......+.+ .+..+.+++||+||+..+..++..+++.+|++|+||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEV-GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 68999999999999999999988764 345543 223333333 345678999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
|++++.+++.+..|+..+.......+.|+++|+||+|+... ..... ....+ ......+.+++++||++|.|++++|
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~-~~~~~--~~~~~~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA-KDALS--TVELDWNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccH-HHHHH--HHHhhcCCcEEEecCCCCCCHHHHH
Confidence 99999999999888887777644458999999999999653 21111 11111 1111234678999999999999999
Q ss_pred HHHHHHHH
Q psy1315 179 NELYQLIL 186 (202)
Q Consensus 179 ~~l~~~~~ 186 (202)
+++++.+.
T Consensus 156 ~~l~~~~~ 163 (198)
T cd04147 156 KELLRQAN 163 (198)
T ss_pred HHHHHHhh
Confidence 99998765
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=174.60 Aligned_cols=163 Identities=23% Similarity=0.294 Sum_probs=118.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
.||+++|++|||||||++++.+..+. .+.++.+..+. ..+.. ++..+.+.+|||||++.+...+..++..+|++++|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEE-CCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 58999999999999999999998886 45566654432 22223 45668899999999999988888889999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhC--------chhhcC-cceEEEEEeeee
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG--------LYELNN-MHLYYIQATCAI 169 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~Sa~ 169 (202)
||++++++++.+...|...... ...+.|+++|+||+|+.............. ...++. ....++++|||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999998886544433333 234789999999999865322111000000 001111 123579999999
Q ss_pred cCCCHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLI 185 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~ 185 (202)
+|.|++++|+++.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998654
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-29 Score=173.74 Aligned_cols=160 Identities=25% Similarity=0.323 Sum_probs=117.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++|++..+. .+.++.. ......... .+..+.+++||+||++.+......+++.+|++++|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTV-DGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLIC 78 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEE-CCEEEEEEEEeCCCcccccccchhhcCCCCEEEEE
Confidence 68999999999999999999998874 3444433 222222222 45678899999999998888888888999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHH--------HHHHhCchhhcCc-ceEEEEEeeee
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ--------IEKLLGLYELNNM-HLYYIQATCAI 169 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~Sa~ 169 (202)
||++++.++......|...... ...+.|+++|+||+|+........ +..... ..+... ...+++++||+
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~Sa~ 156 (171)
T cd00157 79 FSVDSPSSFENVKTKWIPEIRH-YCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEG-EKLAKEIGAIGYMECSAL 156 (171)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHH-HHHHHHhCCeEEEEeecC
Confidence 9999999998877655544433 234899999999999976543211 000000 011122 23489999999
Q ss_pred cCCCHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQ 183 (202)
Q Consensus 170 ~~~~v~~l~~~l~~ 183 (202)
+|.|+++++++|++
T Consensus 157 ~~~gi~~l~~~i~~ 170 (171)
T cd00157 157 TQEGVKEVFEEAIR 170 (171)
T ss_pred CCCCHHHHHHHHhh
Confidence 99999999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=173.27 Aligned_cols=162 Identities=23% Similarity=0.266 Sum_probs=128.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC-cccccccee-eEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNC-EKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.||+++|.+|+|||||++++.+..+.. +.|+.+... ..... ....+.+.+||+||++++...+..++..++++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRY---KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEE---CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEE
Confidence 589999999999999999999887753 455554332 22222 3455788999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||+++..+++.+..++..+.......+.|+++|+||+|+.... ...+..... ...+.+++++||+++.|+.
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gv~ 152 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA------ESWGAAFLESSARENENVE 152 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH------HHcCCeEEEEeCCCCCCHH
Confidence 99999999999999998888876555688999999999986432 222222221 2234689999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1315 176 EGINELYQLILKKRK 190 (202)
Q Consensus 176 ~l~~~l~~~~~~~~~ 190 (202)
++++++.+.+...+.
T Consensus 153 ~l~~~l~~~~~~~~~ 167 (180)
T cd04137 153 EAFELLIEEIEKVEN 167 (180)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998876654
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=173.85 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=116.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccc----cccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIG----KCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
+||+++|++|||||||++++.+..+. .+.+|++.+......... ++..+.+++||++|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999886 457888865554433321 2456899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccC------------------CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNN------------------DNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN 156 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 156 (202)
+|+|||+++++||+.+..|+..+.... ...+.|+++||||+|+.++......+.......++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999988876531 12478999999999997653333222222223344
Q ss_pred CcceEEEEEeeeecC
Q psy1315 157 NMHLYYIQATCAITG 171 (202)
Q Consensus 157 ~~~~~~~~~~Sa~~~ 171 (202)
.+.+.+.++.++..+
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 566777777777644
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=169.51 Aligned_cols=156 Identities=24% Similarity=0.301 Sum_probs=123.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
||+++|++|||||||++++++..+. ...++.+ ......+.. .+..+.+++||+||+..+...+..+++.+|++++||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 78 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVV-DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVY 78 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999987764 3445544 333333333 344678999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|+++++++.....|+..+.........|+++|+||+|+.... ......... ...+.+++++|++++.|++++
T Consensus 79 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~S~~~~~~i~~l 152 (160)
T cd00876 79 SITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA------KEWGCPFIETSAKDNINIDEV 152 (160)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH------HHcCCcEEEeccCCCCCHHHH
Confidence 999999999999998888776444689999999999997632 222333322 223378999999999999999
Q ss_pred HHHHHHH
Q psy1315 178 INELYQL 184 (202)
Q Consensus 178 ~~~l~~~ 184 (202)
+++|.+.
T Consensus 153 ~~~l~~~ 159 (160)
T cd00876 153 FKLLVRE 159 (160)
T ss_pred HHHHHhh
Confidence 9999865
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=155.31 Aligned_cols=178 Identities=46% Similarity=0.806 Sum_probs=159.5
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||.-.++++.++- ..++++|+.+|-.++||||++..|.-.....+.||.|++..++++ ..+.|++||.+|+..
T Consensus 1 Mgn~~sk~~~k~f--~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVty-----kN~kfNvwdvGGqd~ 73 (180)
T KOG0071|consen 1 MGNYMSKLLSKIF--GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY-----KNVKFNVWDVGGQDK 73 (180)
T ss_pred CcchHHHHHHHHh--CcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEe-----eeeEEeeeeccCchh
Confidence 6765566554443 455999999999999999999999988888899999999999986 678899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
.+.+|.+|++...++|+|+|..+.+.++..++.+..++......+.|++|.+||.|+++...+.++++++++.. .+...
T Consensus 74 iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~-~r~~~ 152 (180)
T KOG0071|consen 74 IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER-IRDRN 152 (180)
T ss_pred hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc-ccCCc
Confidence 99999999999999999999998899999999999998887778999999999999999999999999999877 46778
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+.+.++|+.+|.|+.|-|.|+.+.+.
T Consensus 153 W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 153 WYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cEeeccccccchhHHHHHHHHHhhcc
Confidence 89999999999999999999987653
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-28 Score=174.09 Aligned_cols=166 Identities=20% Similarity=0.256 Sum_probs=134.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....+||+++|++|||||||+++++.+.+. .+.+|.+..+....+.. +...+.+.+||++|++.+...+..++..++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYT-NCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 3456799999999999999999988877774 66788888877776654 456789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++|+|||+++..++..+..|+..+... ..+.|+++|+||+|+............ ....++.++++||++|.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQITF------HRKKNLQYYDISAKSNYN 155 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHHHH------HHHcCCEEEEEeCCCCCC
Confidence 999999999999999999888777654 247899999999998653222222221 123456899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKKR 189 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~ 189 (202)
++++|.+|.+.+..+.
T Consensus 156 v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 156 FEKPFLWLARRLTNDP 171 (215)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999887653
|
|
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-30 Score=166.20 Aligned_cols=161 Identities=24% Similarity=0.340 Sum_probs=134.7
Q ss_pred EEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeC
Q psy1315 24 MLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDS 101 (202)
Q Consensus 24 v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 101 (202)
++|++++|||+|+-++..+-|. .-..|.|+.+....+.+ ++..+++++|||.|+++|++....|++.+|+++++||+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~-~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceecc-CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 6899999999999888877764 44688888888887777 67889999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHH
Q psy1315 102 TDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181 (202)
Q Consensus 102 ~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (202)
.|..||++.+.|+.++..+ ....+.+.+++||+|+..+.....-.. ..+++..++||.++||++|.|++..|-.|
T Consensus 81 ankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg----~kla~~y~ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDG----EKLAEAYGIPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred ccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchH----HHHHHHHCCCceeccccccccHhHHHHHH
Confidence 9999999999999988776 455788999999999966432221111 12234568999999999999999999999
Q ss_pred HHHHHHHHh
Q psy1315 182 YQLILKKRK 190 (202)
Q Consensus 182 ~~~~~~~~~ 190 (202)
.+.+.+.+.
T Consensus 156 a~~l~k~~~ 164 (192)
T KOG0083|consen 156 AEELKKLKM 164 (192)
T ss_pred HHHHHHhcc
Confidence 988876654
|
|
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=165.21 Aligned_cols=169 Identities=24% Similarity=0.305 Sum_probs=137.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...-.+||+++|..=+|||||+-+++.++|... ..|.-..+....+.+ ......+.||||+|+++|..+-+.|++.++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~-ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNV-EDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccc-ccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 345679999999999999999999999988633 333333333344434 456788999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++++|||+++++||+.+..|..++..- ....+-+++|+||+|+..+......+. ..+++.-+..++++||+.+.|
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeA----e~YAesvGA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEA----EAYAESVGALYMETSAKDNVG 162 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHH----HHHHHhhchhheecccccccC
Confidence 999999999999999999999988765 455788999999999977654433222 234466788899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKKR 189 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~ 189 (202)
|.++|+.+...+.++-
T Consensus 163 i~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887764
|
|
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=157.49 Aligned_cols=168 Identities=21% Similarity=0.307 Sum_probs=142.5
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
+-.++..+|.+++|+-|+|||+|++++...+|. +-.+++|+.+..-.+.+ .+..+++++|||.|+++|+....+|++.
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev-sgqkiklqiwdtagqerfravtrsyyrg 83 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRG 83 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe-cCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 346788999999999999999999999999986 55788887666655544 6888999999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+.+.++|||++.+..+..+..|+...... ..++..+++++||.|+..... .++.+. +++..+..|+++||+
T Consensus 84 aagalmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~------faeengl~fle~sak 156 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKE------FAEENGLMFLEASAK 156 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHH------HHhhcCeEEEEeccc
Confidence 99999999999999999999999887665 566888999999999976543 334444 345678899999999
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILKK 188 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~ 188 (202)
+|.|+++.|-.....+.+.
T Consensus 157 tg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 157 TGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred ccCcHHHHHHHHHHHHHHh
Confidence 9999999998888777755
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=170.76 Aligned_cols=163 Identities=21% Similarity=0.278 Sum_probs=119.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.||+++|++|+|||||++++....+.. ..++....+.. .... ++..+.+.+||++|++.+....+.++.++|++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~ll 78 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT-DCRV-DGKPVQLALWDTAGQEEYERLRPLSYSKAHVILI 78 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE-EEEE-CCEEEEEEEEECCCChhccccchhhcCCCCEEEE
Confidence 3589999999999999999999777653 34444333221 2222 3456789999999998887777778899999999
Q ss_pred EEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCcC------------HHHHHHHhCchhhcCcce-EEE
Q psy1315 98 VIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQ------------IKQIEKLLGLYELNNMHL-YYI 163 (202)
Q Consensus 98 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~ 163 (202)
|||++++++|..+.. |+..+... .++.|+++|+||+|+..... ..... .++...+ .++
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 150 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGK------RVAKEIGAKKY 150 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHH------HHHHHhCCcEE
Confidence 999999999999875 55554433 34799999999999854211 11111 1222233 479
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHhh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
++|||++|.|++++|+++.+.+..-++.
T Consensus 151 ~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 151 MECSALTGEGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHHhcccCc
Confidence 9999999999999999999877655543
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=152.97 Aligned_cols=166 Identities=27% Similarity=0.506 Sum_probs=148.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
-+.++.+.++|-.++|||||++....+.+. ...|+.|++.+.++ ...+.+.+||.||++.+.++|..|++.+++
T Consensus 17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~t-----kgnvtiklwD~gGq~rfrsmWerycR~v~a 91 (186)
T KOG0075|consen 17 WKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRGVSA 91 (186)
T ss_pred HHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEec-----cCceEEEEEecCCCccHHHHHHHHhhcCcE
Confidence 467899999999999999999999888886 45899999998886 367889999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+++|+|+.+++.....+..+..++......+.|++|.|||.|+++......+...+.+... ....+-+|-+|+++..|+
T Consensus 92 ivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~si-tdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 92 IVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSI-TDREVCCFSISCKEKVNI 170 (186)
T ss_pred EEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcccc-ccceEEEEEEEEcCCccH
Confidence 9999999999999999999999988877889999999999999999888888887776555 445677999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILK 187 (202)
Q Consensus 175 ~~l~~~l~~~~~~ 187 (202)
+.+.+||++....
T Consensus 171 d~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 171 DITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987653
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=184.75 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=126.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC----------Cchhh-HH
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE----------KLRPL-WK 86 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~-~~ 86 (202)
..++|+++|.+|||||||+++|++..+....+..+++.......+ ..+...+.+|||||.. .+... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~-~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLI-ELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEE-EECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 468999999999999999999999876545555555554433222 2344567899999952 22222 23
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.+++++|++|+|+|++++.++.... ++..+.. .+.|+|+|+||+|+.+..........+. ..+......+++++
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~-~~l~~~~~~~~~~~ 362 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREID-RELAQVPWAPRVNI 362 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHH-HhcccCCCCCEEEE
Confidence 4678999999999999887777654 3433333 3789999999999975432222222111 11112334688999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q psy1315 167 CAITGDGLHEGINELYQLILKKRKLQKTNKMNKV 200 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~ 200 (202)
||++|.|++++|+.+.+.+.....+.+++.+|++
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~ 396 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESWDTRIPTGRLNAW 396 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 9999999999999999999999999999998865
|
|
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-28 Score=163.28 Aligned_cols=173 Identities=20% Similarity=0.247 Sum_probs=146.4
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhh
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSY 88 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 88 (202)
++....++..+|++++|..++||||++++++.+-|. .+..++|+.+-.-...+ ..+.+.+.+||++|++++..+...|
T Consensus 11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v-~~Edvr~mlWdtagqeEfDaItkAy 89 (246)
T KOG4252|consen 11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKV-LIEDVRSMLWDTAGQEEFDAITKAY 89 (246)
T ss_pred CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHh-hHHHHHHHHHHhccchhHHHHHHHH
Confidence 445667889999999999999999999999988886 67888887666555555 6778889999999999999999999
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEe
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
++.+.+.++||+.++..||+....|...+.... ..+|.++|-||+|+.++.. ..+++... +..+..++.+
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la------k~l~~RlyRt 161 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA------KKLHKRLYRT 161 (246)
T ss_pred hccccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH------HHhhhhhhhh
Confidence 999999999999999999999999999998863 4899999999999976533 23333322 3456789999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHhh
Q psy1315 167 CAITGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
|+++..|+.++|.+|.+.+.+..++
T Consensus 162 Svked~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 162 SVKEDFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876654
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=156.86 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch---------hhHHhhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR---------PLWKSYTR 90 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~~~~ 90 (202)
.+|+++|.+|+|||||+++|.+..+.. .+..+.+........ ....+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~-~~~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV-APYPFTTKSLFVGHF-DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc-CCCCCcccceeEEEE-ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999887632 111122211111111 2345789999999973210 11111123
Q ss_pred CCCEEEEEEeCCCchhH--HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 91 CTDGIIFVIDSTDVERM--EEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
.+|++|+|+|++++.++ .....|+..+... ..+.|+++|+||+|+........... +......++++|||
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~------~~~~~~~~~~~~Sa 150 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEE------EEELEGEEVLKIST 150 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHH------hhhhccCceEEEEe
Confidence 36899999999886653 5555565555433 24799999999999976543332222 12334678999999
Q ss_pred ecCCCHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLI 185 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~ 185 (202)
++|.|++++++++.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 151 LTEEGVDEVKNKACELL 167 (168)
T ss_pred cccCCHHHHHHHHHHHh
Confidence 99999999999998865
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-26 Score=159.56 Aligned_cols=157 Identities=16% Similarity=0.152 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC-------C-Cccc------cccceeeEeeccc----ccccceEEEEEEcCCCCCch
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY-------L-NTVP------TIGFNCEKVKGQI----GKCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~-------~-~~~~------~~~~~~~~~~~~~----~~~~~~~~~~~D~~G~~~~~ 82 (202)
+|+++|++++|||||+++|++... . .+.+ +.|.+........ .+...+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999987421 1 1112 2233433222111 13456889999999999999
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEE
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY 162 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (202)
..+..+++.+|++|+|+|+++..++.....|... .. .++|+++|+||+|+.+...........+ .+ ......
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~-~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~--~~-~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLA-LE----NNLEIIPVINKIDLPSADPERVKQQIED--VL-GLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHH-HH----cCCCEEEEEECCCCCcCCHHHHHHHHHH--Hh-CCCccc
Confidence 9999999999999999999987666555544332 22 2689999999999865332211111111 11 112235
Q ss_pred EEEeeeecCCCHHHHHHHHHHHH
Q psy1315 163 IQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 163 ~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
++++||++|.|++++++++.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998764
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-27 Score=161.87 Aligned_cols=170 Identities=24% Similarity=0.320 Sum_probs=131.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+|+++||+.++|||+|+-.+..+.|+ .+.||.- ..+.....+.++..+.+.+|||.|+++|..+++..+..+|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 5689999999999999999999988887 5677764 4444444442478899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH-HHHHHH-------hCchhhc-CcceEEEEEee
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI-KQIEKL-------LGLYELN-NMHLYYIQATC 167 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~-------~~~~~~~-~~~~~~~~~~S 167 (202)
+||++.+++||+++...|...... ..++.|+|+||+|.||..+... +.+... .+...++ ......+++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~-~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKH-HCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHh-hCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 999999999999987655555554 3479999999999999853211 111100 0001111 23447899999
Q ss_pred eecCCCHHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~ 189 (202)
|++..|++++|+..+.......
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhccc
Confidence 9999999999999998886544
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=177.72 Aligned_cols=176 Identities=18% Similarity=0.259 Sum_probs=124.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh-----------H
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL-----------W 85 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------~ 85 (202)
...++|+++|.+|+|||||+++|++.......+..+++.......+ ......+.+|||||..+.... .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~-~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPF-ERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEE-EECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 3468999999999999999999998876545555566655544433 234457899999996443221 2
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC-CCcCHHHHHHHhCchhhcCcceEEEE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP-NAIQIKQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (202)
..+++.+|++|+|+|++++.+..... .+...... +.|+++|+||+|+. +..........+. ..+.....++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~----~~~iiiv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~vi 322 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILEA----GKALVIVVNKWDLVKDEKTREEFKKELR-RKLPFLDFAPIV 322 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc----CCcEEEEEECcccCCCHHHHHHHHHHHH-HhcccCCCCceE
Confidence 34678999999999999776655432 33333322 78999999999997 2222223333222 122233457899
Q ss_pred EeeeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 165 ATCAITGDGLHEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
++||++|.|++++|+++.+.+.....+.+++.+|+
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~ 357 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENANRRISTSKLNR 357 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 99999999999999999999988888888777664
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-26 Score=147.16 Aligned_cols=181 Identities=38% Similarity=0.690 Sum_probs=156.4
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||.-.+.+.+.+.... .+.+|.++|-.|+|||++..++.-.....+.|++|++...+++ ++.++++||.+|+..
T Consensus 1 m~~g~~s~f~~L~g~e-~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~y-----KNLk~~vwdLggqtS 74 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPE-REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPY-----KNLKFQVWDLGGQTS 74 (182)
T ss_pred CCchHHHHHHHhcCCc-cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccccc-----ccccceeeEccCccc
Confidence 5666677777776554 8999999999999999999988888888889999999888875 667899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
....|..|+.+.|++|+|+|.+|.+...-....+..++.+....+..++|++||.|........++...+++..+ ....
T Consensus 75 irPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~L-k~r~ 153 (182)
T KOG0072|consen 75 IRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKL-KDRI 153 (182)
T ss_pred ccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHH-hhhe
Confidence 999999999999999999999999988877777777777766778889999999999888888888877777666 3345
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+.+|++||.+|+|+++.++|+.+.+..+
T Consensus 154 ~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 154 WQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred eEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 8999999999999999999999988654
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=157.07 Aligned_cols=159 Identities=23% Similarity=0.218 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC----CchhhHHh---hhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE----KLRPLWKS---YTRCTD 93 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~---~~~~~d 93 (202)
.|+++|.+|||||||++++.+.... .....+.+...............+.+|||||.. ....+... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-ccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999876531 111111121111110101223589999999953 22122233 345699
Q ss_pred EEEEEEeCCCc-hhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDV-ERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++++|+|++++ ++++....|...+..... ..+.|+++|+||+|+.+........... .....+.+++++||+++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKEL----LKELWGKPVFPISALTG 156 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHH----HhhCCCCCEEEEecCCC
Confidence 99999999998 788887777666654321 2378999999999997654433322211 11113567899999999
Q ss_pred CCHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQL 184 (202)
Q Consensus 172 ~~v~~l~~~l~~~ 184 (202)
.|++++|+++.++
T Consensus 157 ~gi~~l~~~i~~~ 169 (170)
T cd01898 157 EGLDELLRKLAEL 169 (170)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999875
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-25 Score=163.40 Aligned_cols=125 Identities=18% Similarity=0.318 Sum_probs=103.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccc------------cccceEEEEEEcCCCCCch
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIG------------KCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~G~~~~~ 82 (202)
....+||+++|+.|||||||+++|++..+. .+.+|+|.++....+.+. ....+.++|||++|++.+.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 446799999999999999999999998885 557888877654333221 1246889999999999999
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCC-----------CCCCcEEEEeeCCCCCCC
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNND-----------NFNVPILILANKQDLPNA 140 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~pvivv~nK~Dl~~~ 140 (202)
.++..+++++|++|+|||++++.+++.+..|+..+..... ....|++||+||+|+...
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999888765421 125899999999999654
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-25 Score=167.15 Aligned_cols=164 Identities=20% Similarity=0.190 Sum_probs=113.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSYTRC 91 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~ 91 (202)
-..|+++|.|+||||||++++.+.+. ...+...+|.......+.-.+...+.+||+||..+ +...+..++++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 45799999999999999999997652 22222222333222211112445799999999532 22344456678
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCcCHHH--HHHHhCchhhcCcceEEEEEeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAIQIKQ--IEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++++|+|+|+++.++++....|..++..... ..++|+++|+||+|+.+...... .+... ...+.+++++||
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~------~~~~~~i~~iSA 310 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL------AALGGPVFLISA 310 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH------HhcCCCEEEEEc
Confidence 9999999999987788888877777655421 24789999999999976533221 11111 223467999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++|+++++++|.+.+.+++
T Consensus 311 ktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 311 VTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred CCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999887644
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-25 Score=156.95 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=106.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC---ccccccceeeEeecccccccceEEEEEEcCCCCC---------chh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN---TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---------LRP 83 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~ 83 (202)
.+..++|+++|++|||||||++++.+..+.. ..++.......+.+ .....+.+|||||... +..
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 113 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL----PDGREVLLTDTVGFIRDLPHQLVEAFRS 113 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe----cCCceEEEeCCCccccCCCHHHHHHHHH
Confidence 4567899999999999999999999876421 12333333333322 2234799999999632 111
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEE
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (202)
.+ ..+.++|++++|+|++++.++.....|...+.. ....+.|+++|+||+|+....... .. ......++
T Consensus 114 ~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-~~~~~~~viiV~NK~Dl~~~~~~~---~~------~~~~~~~~ 182 (204)
T cd01878 114 TL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKE-LGAEDIPMILVLNKIDLLDDEELE---ER------LEAGRPDA 182 (204)
T ss_pred HH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHH-cCcCCCCEEEEEEccccCChHHHH---HH------hhcCCCce
Confidence 11 235679999999999988887776544443332 234478999999999997653322 11 12345679
Q ss_pred EEeeeecCCCHHHHHHHHHHH
Q psy1315 164 QATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
+++||+++.|+++++++|.+.
T Consensus 183 ~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 183 VFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 999999999999999998765
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=167.83 Aligned_cols=161 Identities=18% Similarity=0.281 Sum_probs=111.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-chhh-------HHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-LRPL-------WKSY 88 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~-------~~~~ 88 (202)
.+.++|+++|.+|||||||+|+|++..+..+.+..+.|.......+ ..+...+.+|||||..+ +..+ ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~-~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGII-TLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEE-EeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 4567999999999999999999999888666666655544333222 23456789999999743 2221 1234
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
+..+|++++|+|..+ ++.....++....... +.|+++|+||+|+... ...+....+.. ......++++||
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~-~~~~~~~~l~~----~~~~~~i~~iSA 198 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK-YLNDIKAFLTE----NHPDSLLFPISA 198 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc-cHHHHHHHHHh----cCCCcEEEEEec
Confidence 678999999999764 4555544444443321 5688899999998654 23333333221 122367999999
Q ss_pred ecCCCHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~ 188 (202)
++|.|+++++++|.+.+.+.
T Consensus 199 ktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred cCccCHHHHHHHHHHhCCCC
Confidence 99999999999999877544
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=150.72 Aligned_cols=158 Identities=22% Similarity=0.191 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCc---cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNT---VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.|+++|.+|+|||||+++|....+... ..+........... ......+.+|||||++.+...+..++..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAE--VLKIPGITFIDTPGHEAFTNMRARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecc--cCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEE
Confidence 589999999999999999998876533 11221222222221 1246789999999999888888889999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhh----cCcceEEEEEeeeecCCC
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYEL----NNMHLYYIQATCAITGDG 173 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|+++...... ...+..+.. .+.|+++|+||+|+..... ......+..... .....++++++|+++++|
T Consensus 80 v~d~~~~~~~~~-~~~~~~~~~----~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (168)
T cd01887 80 VVAADDGVMPQT-IEAIKLAKA----ANVPFIVALNKIDKPNANP-ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEG 153 (168)
T ss_pred EEECCCCccHHH-HHHHHHHHH----cCCCEEEEEEceecccccH-HHHHHHHHHhhccccccccCcCcEEEeecccCCC
Confidence 999987432211 111222222 2789999999999875432 111111110000 012356899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLIL 186 (202)
Q Consensus 174 v~~l~~~l~~~~~ 186 (202)
+.+++++|.+...
T Consensus 154 i~~l~~~l~~~~~ 166 (168)
T cd01887 154 IDDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987643
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=147.57 Aligned_cols=157 Identities=25% Similarity=0.320 Sum_probs=115.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|.+|+|||||++++.+..++ ...++.+.+.....+.. +...+.+.+||+||+..+...+..+.+.++.++.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 479999999999999999999988854 33445444444433322 3334789999999999999999999999999999
Q ss_pred EEeCCCc-hhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDV-ERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
++|+... .++.... .+...+.... ..+.|+++|+||+|+............+. .....+++++||.++.|+.
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~gv~ 153 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAKLKTHVAFLFA-----KLNGEPIIPLSAETGKNID 153 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcchhhHHHHHHHh-----hccCCceEEeecCCCCCHH
Confidence 9998766 5565544 4444444432 22789999999999976543333333222 2334569999999999999
Q ss_pred HHHHHHH
Q psy1315 176 EGINELY 182 (202)
Q Consensus 176 ~l~~~l~ 182 (202)
+++++|.
T Consensus 154 ~~~~~l~ 160 (161)
T TIGR00231 154 SAFKIVE 160 (161)
T ss_pred HHHHHhh
Confidence 9999863
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=161.72 Aligned_cols=156 Identities=20% Similarity=0.187 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch--------hhHHhhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--------PLWKSYTRCT 92 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~~~ 92 (202)
+|+++|.||||||||+|+|.+......++..++|...+.... ......+.+|||||..... .....+++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~-~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIH-TTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEE-EcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 689999999999999999999887655555555444332222 2334579999999964321 1234567889
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHH-HHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ-IEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
|++++|+|+++..+.. .++...... .+.|+++|+||+|+.+...... ...... .....+++++||++|
T Consensus 81 Dvvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~v~~iSA~~g 149 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAI-----LEDFKDIVPISALTG 149 (270)
T ss_pred CEEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHh-----hcCCCceEEEecCCC
Confidence 9999999999766654 233333222 2789999999999964322111 111111 111237899999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKK 188 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~ 188 (202)
.|++++++++.+.+...
T Consensus 150 ~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 150 DNTSFLAAFIEVHLPEG 166 (270)
T ss_pred CCHHHHHHHHHHhCCCC
Confidence 99999999999877544
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=150.32 Aligned_cols=150 Identities=21% Similarity=0.150 Sum_probs=99.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC---CC-Cccc--cccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ---YL-NTVP--TIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~---~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
+.|+++|++|||||||+++|.+.. +. +..+ +....+....+ . ....+.+|||||++++......+++.+|
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~---~-~~~~~~~~DtpG~~~~~~~~~~~~~~ad 76 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL---P-SGKRLGFIDVPGHEKFIKNMLAGAGGID 76 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe---c-CCcEEEEEECCChHHHHHHHHhhhhcCC
Confidence 368999999999999999998643 22 1112 22222222222 1 1468999999999988777778888999
Q ss_pred EEEEEEeCCC---chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH----HHHHHHhCchhhcCcceEEEEEe
Q psy1315 94 GIIFVIDSTD---VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI----KQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 94 ~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
++++|+|+++ +++..... . .... ...|+++|+||+|+...... .++.+.+... ...+.+++++
T Consensus 77 ~ii~V~d~~~~~~~~~~~~~~----~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 146 (164)
T cd04171 77 LVLLVVAADEGIMPQTREHLE----I-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT---FLADAPIFPV 146 (164)
T ss_pred EEEEEEECCCCccHhHHHHHH----H-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc---CcCCCcEEEE
Confidence 9999999986 22332221 1 1111 13499999999999764321 1222222110 1145789999
Q ss_pred eeecCCCHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQ 183 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~ 183 (202)
||+++.|++++++.+.+
T Consensus 147 Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998754
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=155.02 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc--CCCCCc-------------cccccceeeEeecccccccceEEEEEEcCCCCCchhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF--DQYLNT-------------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL 84 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 84 (202)
-+|+++|++++|||||+++|++ ..+... .++.+.+.......+ ....+.+.+|||||++++...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV-TYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE-EECCEEEEEEECCCcHHHHHH
Confidence 4899999999999999999997 333321 123344444333333 456788999999999999999
Q ss_pred HHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH---HHHHHhCc-hhhcCcce
Q psy1315 85 WKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK---QIEKLLGL-YELNNMHL 160 (202)
Q Consensus 85 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~---~~~~~~~~-~~~~~~~~ 160 (202)
+..+++.+|++++|+|+++. .+.....++..... .+.|+++|+||+|+....... ++...+.. .......+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD 156 (194)
T ss_pred HHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence 99999999999999999863 22332333333322 278999999999997543222 22222210 01112346
Q ss_pred EEEEEeeeecCCCHHHH
Q psy1315 161 YYIQATCAITGDGLHEG 177 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l 177 (202)
++++++||++|.|+.++
T Consensus 157 ~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 157 FPVLYASAKNGWASLNL 173 (194)
T ss_pred cCEEEeehhcccccccc
Confidence 78999999999887555
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=148.03 Aligned_cols=147 Identities=24% Similarity=0.301 Sum_probs=107.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh--------hHHhhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP--------LWKSYTRC 91 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~ 91 (202)
++|+++|++|+|||||++++.+.......+..+.+........ ......+.+|||||...+.. .....+.+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESI-DIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEE-EeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999998875433344444433322222 23456899999999655432 13345678
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+|++++|+|++++.+......+.. ..+.|+++|+||+|+...... .......+++++||+++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-----------~~~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-----------LSLLAGKPIIAISAKTG 142 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-----------ccccCCCceEEEECCCC
Confidence 999999999998777766543322 337899999999999765433 11345678999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLI 185 (202)
Q Consensus 172 ~~v~~l~~~l~~~~ 185 (202)
.|+++++++|.+.+
T Consensus 143 ~~v~~l~~~l~~~~ 156 (157)
T cd04164 143 EGLDELKEALLELA 156 (157)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999988754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-25 Score=151.76 Aligned_cols=144 Identities=22% Similarity=0.279 Sum_probs=99.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc------hhhHHhhh--cC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL------RPLWKSYT--RC 91 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~ 91 (202)
++|+++|.|+||||||+|+|++.+ ......+|.|.......+ ......+.++|+||...+ ......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~-~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIF-KLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEE-EETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEE-EecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 689999999999999999999988 345556677776665544 445688999999994322 23344444 57
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC----HHHHHHHhCchhhcCcceEEEEEee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ----IKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
.|++|+|+|+++.+.-.. ...++... ++|+++|+||+|+..... ...+.+ ..++|++++|
T Consensus 79 ~D~ii~VvDa~~l~r~l~---l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~---------~Lg~pvi~~s 142 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY---LTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSE---------RLGVPVIPVS 142 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH---HHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHH---------HHTS-EEEEB
T ss_pred CCEEEEECCCCCHHHHHH---HHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHH---------HhCCCEEEEE
Confidence 999999999986443333 33333333 799999999999865432 222333 3467999999
Q ss_pred eecCCCHHHHHHHH
Q psy1315 168 AITGDGLHEGINEL 181 (202)
Q Consensus 168 a~~~~~v~~l~~~l 181 (202)
|++++|++++++.|
T Consensus 143 a~~~~g~~~L~~~I 156 (156)
T PF02421_consen 143 ARTGEGIDELKDAI 156 (156)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred eCCCcCHHHHHhhC
Confidence 99999999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=170.41 Aligned_cols=176 Identities=16% Similarity=0.238 Sum_probs=126.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh-----------hH
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP-----------LW 85 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~~ 85 (202)
...++|+++|.+|+|||||++++++.......+..|++........ ......+.+|||||...... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~-~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPF-ERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEE-EECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 3579999999999999999999998876555666677766655444 34556789999999532111 12
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
..+++.+|++|+|+|++++.+..... .+..+... ++|+++|+||+|+.+..........+. ..+......++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~----~~~~ivv~NK~Dl~~~~~~~~~~~~~~-~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALEA----GRALVIVVNKWDLVDEKTMEEFKKELR-RRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc----CCcEEEEEECccCCCHHHHHHHHHHHH-HhcccccCCCEEE
Confidence 34678899999999999776655432 23333332 789999999999975433333333322 1222345678999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 166 TCAITGDGLHEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
+||+++.|++++++.+.+.......+.++..+|+
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~ 357 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENANRRISTSVLNR 357 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHH
Confidence 9999999999999999999888887787777664
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=151.29 Aligned_cols=136 Identities=21% Similarity=0.251 Sum_probs=109.9
Q ss_pred CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCC
Q psy1315 46 NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125 (202)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~ 125 (202)
.+.||.|..+....+.. ++..+.+.||||||++++..++..+++++|++|+|||++++++|+.+..|+..+... ....
T Consensus 8 ~~~~Tig~~~~~~~~~~-~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~-~~~~ 85 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYL-DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE-RGKD 85 (176)
T ss_pred CCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCC
Confidence 56788888887665555 567799999999999999999999999999999999999999999999888887765 2357
Q ss_pred CcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 126 VPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 126 ~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
.|+++|+||+|+.+.. ...+.... ....+..+++|||++|.|++++|++|.+.+.+..
T Consensus 86 ~piilVgNK~DL~~~~~v~~~e~~~~------~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 86 VIIALVGNKTDLGDLRKVTYEEGMQK------AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CeEEEEEECcccccccCCCHHHHHHH------HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 8999999999996532 22232222 1233567899999999999999999999887644
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-25 Score=159.45 Aligned_cols=164 Identities=20% Similarity=0.292 Sum_probs=103.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC-----------CCCchhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG-----------QEKLRPL 84 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~ 84 (202)
....++|+++|.+|+|||||++++.+..+. .....+++........ . .+.+||||| ++.+...
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~---~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDW---G--DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEee---c--ceEEEeCCccccccccCHHHHHHHHHH
Confidence 346789999999999999999999987754 3333455555444422 2 589999999 3455556
Q ss_pred HHhhhc----CCCEEEEEEeCCCchhHHH---------HHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHH
Q psy1315 85 WKSYTR----CTDGIIFVIDSTDVERMEE---------VKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKL 149 (202)
Q Consensus 85 ~~~~~~----~~d~~ilv~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~ 149 (202)
+..++. .++++++|+|.+....+.. ....+..... ..+.|+++|+||+|+.... ...++...
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 156 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAER 156 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHH
Confidence 666654 3578888888764322100 0111122222 1278999999999986543 11222222
Q ss_pred hCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 150 LGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 150 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
+.........+.+++++||++| |+++++++|.+.+.+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 157 LGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred hcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 2210000112246899999999 99999999998875443
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-24 Score=167.03 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=113.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh--------HH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL--------WK 86 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~ 86 (202)
.....++|+++|++|+|||||+|+|++.....+.+..+++.+.....+ ..+...+.+|||||....... ..
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i-~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDF-ELNGILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEE-EECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 455789999999999999999999998765544555565555444333 345677899999997654432 24
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.+++.+|++++|||++++.++... |+..... .+.|+++|+||+|+... .. .. +....+.+++++
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~---~~------~~~~~~~~~~~v 341 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SL---EF------FVSSKVLNSSNL 341 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-ch---hh------hhhhcCCceEEE
Confidence 678899999999999988777654 5444432 37899999999999654 11 11 112234578899
Q ss_pred eeecCCCHHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
||++ .|++++++.+.+.+.+.
T Consensus 342 Sak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 342 SAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EEec-CCHHHHHHHHHHHHHHH
Confidence 9997 69999999999887654
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=178.36 Aligned_cols=176 Identities=16% Similarity=0.224 Sum_probs=122.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC----------chhh-HH
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK----------LRPL-WK 86 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~-~~ 86 (202)
..++|+++|.+|||||||+|+|++.......+..+++........ ..+...+.+|||||..+ +... ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~-~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIV-EIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEE-EECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 458999999999999999999998875433334444444433222 22344678999999532 1111 13
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.+++.+|++++|+|+++..+..... ++..+... ++|+++|+||+|+.+..........+.. .+......+++++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~~----~~piIiV~NK~DL~~~~~~~~~~~~~~~-~l~~~~~~~ii~i 601 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVDA----GRALVLVFNKWDLMDEFRRQRLERLWKT-EFDRVTWARRVNL 601 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc----CCCEEEEEEchhcCChhHHHHHHHHHHH-hccCCCCCCEEEE
Confidence 4478899999999999877776654 33333332 7899999999999764333333322221 1112234678999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q psy1315 167 CAITGDGLHEGINELYQLILKKRKLQKTNKMNKV 200 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~ 200 (202)
||++|.|++++++.+.+.+.+..++.+++.+|++
T Consensus 602 SAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~ 635 (712)
T PRK09518 602 SAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAF 635 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHH
Confidence 9999999999999999999988888888887754
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-24 Score=153.85 Aligned_cols=170 Identities=31% Similarity=0.381 Sum_probs=124.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||+++|.+..+.. +.++.+..+....... ....+.+.+|||+|++++...+..|+..++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP-YRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEe-CCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 4899999999999999999999999874 4556554444443322 2337889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHH-----------HHHHhCchhhcCcceEEEEEe
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ-----------IEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 166 (202)
|+|..+..++......|............|+++|+||+|+........ .................++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999998666666665555444443335799999999999976532111 000000001111123338999
Q ss_pred eee--cCCCHHHHHHHHHHHHHHHH
Q psy1315 167 CAI--TGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 167 Sa~--~~~~v~~l~~~l~~~~~~~~ 189 (202)
|++ ++.++.++|..+...+.+..
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhh
Confidence 999 99999999999999886553
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=147.74 Aligned_cols=134 Identities=23% Similarity=0.176 Sum_probs=91.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC-----CchhhHHhhhcCCCEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-----KLRPLWKSYTRCTDGI 95 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~d~~ 95 (202)
||+++|++|||||||+++|.+..+. +.+|.+.. + . -.+|||||.. .+..... .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-----~-----~---~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-----Y-----N---DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-----E-----c---CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 22332211 1 1 1689999973 2333333 47899999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
|+|||++++.++... .| .... ..|+++|+||+|+.+. ...+......+ .....+++++||++|.|+
T Consensus 67 ilv~d~~~~~s~~~~-~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 67 ALVQSATDPESRFPP-GF-ASIF------VKPVIGLVTKIDLAEADVDIERAKELLE-----TAGAEPIFEISSVDEQGL 133 (142)
T ss_pred EEEecCCCCCcCCCh-hH-HHhc------cCCeEEEEEeeccCCcccCHHHHHHHHH-----HcCCCcEEEEecCCCCCH
Confidence 999999998887542 23 2221 2499999999998653 22222233221 112237899999999999
Q ss_pred HHHHHHHH
Q psy1315 175 HEGINELY 182 (202)
Q Consensus 175 ~~l~~~l~ 182 (202)
+++|+++.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99999874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-24 Score=145.41 Aligned_cols=154 Identities=33% Similarity=0.440 Sum_probs=117.0
Q ss_pred EEcCCCCCHHHHHHHhhcCCC-C-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeC
Q psy1315 24 MLGLDSAGKTTALYRLKFDQY-L-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDS 101 (202)
Q Consensus 24 v~G~~~~GKssL~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 101 (202)
++|++|+|||||++++.+... . ...++. .......... ......+.+||+||...+...+..+++.+|++++|+|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 78 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEV-DGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDV 78 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEE-CCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEEC
Confidence 589999999999999998876 3 333443 5555555533 34567899999999888888888899999999999999
Q ss_pred CCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHH
Q psy1315 102 TDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181 (202)
Q Consensus 102 ~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (202)
+++.++.....++..........+.|+++|+||+|+............ .........+++++|+.++.|+.+++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 79 TDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELA---EQLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHH---HHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 999888888877444433335668999999999999765444332200 11123456889999999999999999998
Q ss_pred H
Q psy1315 182 Y 182 (202)
Q Consensus 182 ~ 182 (202)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred h
Confidence 5
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-24 Score=168.71 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=113.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--------chhhHH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--------LRPLWK 86 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~ 86 (202)
+.....+|+++|.+|||||||+|+|.+.......++.|++........ ......+.+|||||.+. +...+.
T Consensus 34 ~~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~ 112 (472)
T PRK03003 34 EGGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDA-EWNGRRFTVVDTGGWEPDAKGLQASVAEQAE 112 (472)
T ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEE-EECCcEEEEEeCCCcCCcchhHHHHHHHHHH
Confidence 334568999999999999999999998876656667777766555543 34456789999999652 334566
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.+++.+|++|+|+|+++..++.. ..+...+.. .++|+++|+||+|+..... +...... ...+. .+++
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~~--~~~~~~~-----~g~~~-~~~i 179 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGEA--DAAALWS-----LGLGE-PHPV 179 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccch--hhHHHHh-----cCCCC-eEEE
Confidence 77899999999999998765543 222222222 2799999999999864321 1111111 11222 3689
Q ss_pred eeecCCCHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
||++|.|++++|+++.+.+.+
T Consensus 180 SA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 180 SALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EcCCCCCcHHHHHHHHhhccc
Confidence 999999999999999988754
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-24 Score=162.32 Aligned_cols=176 Identities=19% Similarity=0.280 Sum_probs=137.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC----------Cchh-hHH
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE----------KLRP-LWK 86 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~-~~~ 86 (202)
..++|+++|.|++|||||+|++++....-..+..|+|.+.+.... ..+...+.++||.|.. .|.. -..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~-e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEF-ERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeE-EECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 469999999999999999999999999888999999999999877 5677889999999932 2221 244
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEE
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 164 (202)
..+..+|.+++|+|++.+ +......+..+... .+.++|+|.||||+.+. .........+.. .+......+++
T Consensus 256 ~aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~-~l~~l~~a~i~ 329 (444)
T COG1160 256 KAIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRR-KLPFLDFAPIV 329 (444)
T ss_pred hHHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHH-HhccccCCeEE
Confidence 557889999999999954 33333333333332 28999999999999775 333333333332 33345678899
Q ss_pred EeeeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q psy1315 165 ATCAITGDGLHEGINELYQLILKKRKLQKTNKMNKV 200 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~ 200 (202)
++||+++.|++++|+.+.+.......+.+++.+|++
T Consensus 330 ~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~ 365 (444)
T COG1160 330 FISALTGQGLDKLFEAIKEIYECATRRISTSLLNRV 365 (444)
T ss_pred EEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 999999999999999999999999999999999875
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=167.76 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=111.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh--------HHh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL--------WKS 87 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~ 87 (202)
....++|+++|.+|+|||||+|+|.+.......+..+.+.+.....+ ......+.+|||||....... ...
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i-~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHI-NLDGIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEE-EECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 34568999999999999999999998775444445555544433333 334567999999997654322 334
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++++|++++|+|++++.++..... +.. ..+.|+++|+||+|+....... .....+++++|
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~------------~~~~~~~i~iS 351 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE------------EENGKPVIRIS 351 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh------------hccCCceEEEE
Confidence 6788999999999998877765432 222 2378999999999997543321 12245789999
Q ss_pred eecCCCHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILK 187 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~ 187 (202)
|++|.|++++++++.+.+..
T Consensus 352 Aktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 352 AKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eeCCCCHHHHHHHHHHHHhh
Confidence 99999999999999988754
|
|
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-25 Score=146.73 Aligned_cols=169 Identities=41% Similarity=0.616 Sum_probs=144.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC--------CCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY--------LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWK 86 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 86 (202)
..+..+.|+++|..++|||||+.+.-.... ....+|.|.+...+.+ . ...+.+||.+|++..+++|.
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v---~--~~~l~fwdlgGQe~lrSlw~ 87 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV---C--NAPLSFWDLGGQESLRSLWK 87 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee---c--cceeEEEEcCChHHHHHHHH
Confidence 345679999999999999999988753211 2346778888877776 2 55789999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.|+..++++|+++|+++++.|+.....+..+..+....+.|+++.+||.|+.+.....++...+.+.........++.++
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 88 KYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccc
Confidence 99999999999999999999999888888877776677999999999999999988888888877544445577899999
Q ss_pred eeecCCCHHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
||.+|+||++-.+|++..+.++
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999998876
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=145.95 Aligned_cols=159 Identities=17% Similarity=0.231 Sum_probs=104.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch-----------hhHHh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-----------PLWKS 87 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~~~ 87 (202)
.++|+++|++|+|||||++++++.......+..+.+........ ......+.+||+||..... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPF-EYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEE-EECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 68999999999999999999998765433333333333322211 2234568899999964321 11233
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEE
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
.+..+|++++|+|++++.+..... .+..... .+.|+++|+||+|+.... ........+.. .+......++++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 154 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLR-IAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRR-KLPFLDYAPIVF 154 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHh-hcccccCCceEE
Confidence 567899999999999876654432 2222222 268999999999997652 23333333221 121223578999
Q ss_pred eeeecCCCHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQL 184 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~ 184 (202)
+||+++.|++++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=161.80 Aligned_cols=152 Identities=22% Similarity=0.249 Sum_probs=104.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC---CccccccceeeEeecccccccceEEEEEEcCCCC---------Cchhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE---------KLRPL 84 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~ 84 (202)
...++|+++|.+|+|||||+|+|.+.... ...+|...+...+.+ .+...+.+|||||.. .+...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~----~~~~~i~l~DT~G~~~~l~~~lie~f~~t 262 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL----PDGGEVLLTDTVGFIRDLPHELVAAFRAT 262 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe----CCCceEEEEecCcccccCCHHHHHHHHHH
Confidence 35599999999999999999999987642 113344444444433 234579999999962 12222
Q ss_pred HHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEE
Q psy1315 85 WKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 85 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (202)
...+.++|++++|+|++++.++.....|... +......+.|+++|+||+|+...... .... ....+++
T Consensus 263 -le~~~~ADlil~VvD~s~~~~~~~~~~~~~~-L~~l~~~~~piIlV~NK~Dl~~~~~v---~~~~-------~~~~~~i 330 (351)
T TIGR03156 263 -LEEVREADLLLHVVDASDPDREEQIEAVEKV-LEELGAEDIPQLLVYNKIDLLDEPRI---ERLE-------EGYPEAV 330 (351)
T ss_pred -HHHHHhCCEEEEEEECCCCchHHHHHHHHHH-HHHhccCCCCEEEEEEeecCCChHhH---HHHH-------hCCCCEE
Confidence 2347889999999999998877765543332 23223347899999999999753221 1111 0123579
Q ss_pred EeeeecCCCHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~ 184 (202)
++||++|.|+++++++|.+.
T Consensus 331 ~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 331 FVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEEccCCCCHHHHHHHHHhh
Confidence 99999999999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=147.67 Aligned_cols=159 Identities=22% Similarity=0.234 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCcccc---------------ccceeeEeecccccccceEEEEEEcCCCCCchhhH
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPT---------------IGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLW 85 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 85 (202)
+|+++|.+|+|||||++++.+.......+. .+.+........ ......+.+||+||...+...+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~ 79 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF-EWPDRRVNFIDTPGHEDFSSEV 79 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE-eeCCEEEEEEeCCCcHHHHHHH
Confidence 489999999999999999988766432211 112222111111 2345689999999999888889
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH----HHHHHhCchhh------
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK----QIEKLLGLYEL------ 155 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~~------ 155 (202)
..+++.+|++++|+|+.++.+... ..++..... .+.|+++|+||+|+..+.... .+...++....
T Consensus 80 ~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 80 IRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 999999999999999987554332 223333322 379999999999997643322 23333322110
Q ss_pred --cCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 156 --NNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 156 --~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
......+++++||+++.|++++++++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 023578899999999999999999998875
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-24 Score=148.89 Aligned_cols=152 Identities=25% Similarity=0.275 Sum_probs=102.8
Q ss_pred EEcCCCCCHHHHHHHhhcCCCC--Cc-cccccceeeEeeccccccc-ceEEEEEEcCCCCC----chh---hHHhhhcCC
Q psy1315 24 MLGLDSAGKTTALYRLKFDQYL--NT-VPTIGFNCEKVKGQIGKCK-GINFLIWDVGGQEK----LRP---LWKSYTRCT 92 (202)
Q Consensus 24 v~G~~~~GKssL~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~----~~~---~~~~~~~~~ 92 (202)
++|++|||||||++++.+.... .+ ..|......... .. ...+.+||+||... ... .+..+++.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 75 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVE-----VPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRA 75 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEE-----cCCCCeEEEEeccccchhhhcCCCccHHHHHHHhcc
Confidence 5899999999999999987641 11 112222222222 23 56789999999632 111 234557889
Q ss_pred CEEEEEEeCCCc------hhHHHHHHHHHHHHccCC------CCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 93 DGIIFVIDSTDV------ERMEEVKIELIKTIKNND------NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 93 d~~ilv~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
|++++|+|++++ .++.....|...+..... ..+.|+++|+||+|+........... ........
T Consensus 76 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~----~~~~~~~~ 151 (176)
T cd01881 76 DAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELV----RELALEEG 151 (176)
T ss_pred CEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHH----HHHhcCCC
Confidence 999999999987 467776666665554321 13799999999999976544333311 11123346
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.+++++||+++.|++++++++.+.
T Consensus 152 ~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 152 AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCEEEEehhhhcCHHHHHHHHHhh
Confidence 679999999999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-23 Score=147.21 Aligned_cols=162 Identities=26% Similarity=0.336 Sum_probs=114.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC-CEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT-DGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~-d~~ilv~ 99 (202)
+|+++|++|||||||+++|.+..+..+.++...+........ ......+.+||+||+.++...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~-~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNS-EGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeec-CCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999887655444433333332211 13457899999999999999999999998 9999999
Q ss_pred eCCCc-hhHHHHHHHHHHHHccC--CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc------------------------
Q psy1315 100 DSTDV-ERMEEVKIELIKTIKNN--DNFNVPILILANKQDLPNAIQIKQIEKLLGL------------------------ 152 (202)
Q Consensus 100 d~~~~-~s~~~~~~~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~------------------------ 152 (202)
|+.+. .++.....++..++... ...+.|+++++||+|+........+...+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99987 67777776665554321 2358999999999998764333221111100
Q ss_pred ---------hhhc-CcceEEEEEeeeecCC-CHHHHHHHHHH
Q psy1315 153 ---------YELN-NMHLYYIQATCAITGD-GLHEGINELYQ 183 (202)
Q Consensus 153 ---------~~~~-~~~~~~~~~~Sa~~~~-~v~~l~~~l~~ 183 (202)
..+. ....+.++++|++.+. |++.+.+||.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0011 1246779999998876 69999999864
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=148.29 Aligned_cols=161 Identities=19% Similarity=0.164 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC----CCC--Cc----cccccceeeEeeccc---------ccccceEEEEEEcCCCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD----QYL--NT----VPTIGFNCEKVKGQI---------GKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~----~~~--~~----~~~~~~~~~~~~~~~---------~~~~~~~~~~~D~~G~~~ 80 (202)
++|+++|++++|||||+++|.+. .+. .. ..|.+.......+.. .....+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111 11 233333333333321 023467899999999866
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH----HHHHHhCchhhc
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK----QIEKLLGLYELN 156 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~~~ 156 (202)
+..........+|++++|+|+.+.........+.. ... .+.|+++|+||+|+....... .+...+.. .+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~-~~~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQK-TLE 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHH-HHH
Confidence 54444455667899999999986443333222221 111 157999999999987543222 22222111 010
Q ss_pred --CcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 157 --NMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 157 --~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
...+++++++||++|.|++++++++.+++.
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 124678999999999999999999998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=143.48 Aligned_cols=148 Identities=20% Similarity=0.284 Sum_probs=99.2
Q ss_pred EEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh--------hHHhhhcCCCE
Q psy1315 23 VMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP--------LWKSYTRCTDG 94 (202)
Q Consensus 23 ~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~d~ 94 (202)
+++|.+|+|||||++++.+.......+..+.+........ ......+.+|||||...+.. .+..+++.+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEA-EWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEE-EECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 4799999999999999998764322333333333322222 33457899999999877543 34566788999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+++|+|..+..+.... ++...... .+.|+++|+||+|+...... ..... .....+++++|++++.|+
T Consensus 80 ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~--~~~~~------~~~~~~~~~~Sa~~~~gv 146 (157)
T cd01894 80 ILFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE--AAEFY------SLGFGEPIPISAEHGRGI 146 (157)
T ss_pred EEEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH--HHHHH------hcCCCCeEEEecccCCCH
Confidence 9999999765433322 22222222 16999999999999765332 11111 111126789999999999
Q ss_pred HHHHHHHHHH
Q psy1315 175 HEGINELYQL 184 (202)
Q Consensus 175 ~~l~~~l~~~ 184 (202)
+++++++.+.
T Consensus 147 ~~l~~~l~~~ 156 (157)
T cd01894 147 GDLLDAILEL 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=144.61 Aligned_cols=147 Identities=22% Similarity=0.259 Sum_probs=99.4
Q ss_pred EEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchh------hHHhhhc--CCCE
Q psy1315 24 MLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP------LWKSYTR--CTDG 94 (202)
Q Consensus 24 v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~--~~d~ 94 (202)
++|.+|+|||||++++.+..+. ...+..........+.. ....+.+|||||+..+.. ++..++. ++|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL---GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee---CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence 5899999999999999987632 22232223222223322 235799999999876543 3555664 8999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|+|+|+++++... .++..+... ++|+++|+||+|+............ +....+.+++++||.++.|+
T Consensus 78 vi~v~d~~~~~~~~---~~~~~~~~~----~~~~iiv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~iSa~~~~~~ 145 (158)
T cd01879 78 IVNVVDATNLERNL---YLTLQLLEL----GLPVVVALNMIDEAEKRGIKIDLDK-----LSELLGVPVVPTSARKGEGI 145 (158)
T ss_pred EEEEeeCCcchhHH---HHHHHHHHc----CCCEEEEEehhhhcccccchhhHHH-----HHHhhCCCeEEEEccCCCCH
Confidence 99999998754432 233333332 7899999999999765332221111 11223568999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 175 HEGINELYQLI 185 (202)
Q Consensus 175 ~~l~~~l~~~~ 185 (202)
+++++++.+..
T Consensus 146 ~~l~~~l~~~~ 156 (158)
T cd01879 146 DELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=157.51 Aligned_cols=159 Identities=23% Similarity=0.260 Sum_probs=107.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-cccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL--NT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKS 87 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~ 87 (202)
-...|+++|.|+||||||++++.+.... .+ ..|...+...+.+ .+...+.+||+||..+ +...+..
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~----~~~~~~~i~D~PGli~~a~~~~gLg~~flr 231 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV----DDGRSFVIADIPGLIEGASEGAGLGHRFLK 231 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe----CCceEEEEEeCCCcccCCcccccHHHHHHH
Confidence 3467999999999999999999986531 11 1122222222222 2336899999999642 2233444
Q ss_pred hhcCCCEEEEEEeCCCc---hhHHHHHHHHHHHHccC-CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEE
Q psy1315 88 YTRCTDGIIFVIDSTDV---ERMEEVKIELIKTIKNN-DNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (202)
.+++++++|+|+|+++. ++++....|..++.... ...++|+++|+||+|+............+ ....+.++
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l-----~~~~~~~v 306 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKEL-----KKALGKPV 306 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHH-----HHHcCCcE
Confidence 56679999999999876 56777766666554432 13478999999999997653332222222 12234679
Q ss_pred EEeeeecCCCHHHHHHHHHHHH
Q psy1315 164 QATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+++||++++|++++++++.+.+
T Consensus 307 i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 307 FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEEccCCcCHHHHHHHHHHHh
Confidence 9999999999999999998764
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-23 Score=133.09 Aligned_cols=172 Identities=37% Similarity=0.587 Sum_probs=147.4
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHH
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWK 86 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 86 (202)
.++.....+..+.++|+++|-.++|||||+.+|.........||.|++...+.+ .....+++||.+|+...+..|.
T Consensus 5 til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~----~g~f~LnvwDiGGqr~IRpyWs 80 (185)
T KOG0074|consen 5 TILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEY----DGTFHLNVWDIGGQRGIRPYWS 80 (185)
T ss_pred HHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEee----cCcEEEEEEecCCccccchhhh
Confidence 345556667789999999999999999999999988877889999999999887 5678999999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.|+.+.|.+|+|+|.++...|+.+...+-++.........|+.+.+||.|+.-....+++...+.+..+ +...+.+-+|
T Consensus 81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~l-rdRswhIq~c 159 (185)
T KOG0074|consen 81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGL-RDRSWHIQEC 159 (185)
T ss_pred hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhh-hhceEEeeeC
Confidence 999999999999999999999998888888888767778999999999999877777666666555444 3446778899
Q ss_pred eeecCCCHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQ 183 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~ 183 (202)
|+.+++|+..-.+|+..
T Consensus 160 sals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 160 SALSLEGSTDGSDWVQS 176 (185)
T ss_pred ccccccCccCcchhhhc
Confidence 99999999888777654
|
|
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-24 Score=140.02 Aligned_cols=177 Identities=17% Similarity=0.199 Sum_probs=144.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...-.+||.++|++..|||||+-.++++.+. +...+.|+++...++.+ .+..+.+.+||.+|++++..+.+.....+-
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i-~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSI-RGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEe-cceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 3456899999999999999999999999885 56788899888888877 678899999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHH-HhCchhhcCcceEEEEEeeeecCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEK-LLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++++||++.++.+..+..|+.+.... +..-+| |+||+|.|+.-..+++..+. ..+...+++.-+.++|+||+..+.
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~-NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sI 172 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGL-NKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSI 172 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhcc-CCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccc
Confidence 999999999999999999999998776 333444 56799999854444332221 112245556678999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhh
Q psy1315 173 GLHEGINELYQLILKKRKLQKT 194 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~~~~~ 194 (202)
|++.+|..+...+..-...++.
T Consensus 173 Nv~KIFK~vlAklFnL~~ti~~ 194 (205)
T KOG1673|consen 173 NVQKIFKIVLAKLFNLPWTIPE 194 (205)
T ss_pred cHHHHHHHHHHHHhCCceeccc
Confidence 9999999998888766555443
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=140.19 Aligned_cols=156 Identities=19% Similarity=0.248 Sum_probs=103.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh--------hHHhhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP--------LWKSYTR 90 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~ 90 (202)
..+|+++|++|+|||||++++.+.......+....+........ ......+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY-TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE-EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998765433333333322222212 34457899999999654332 3345578
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC-CcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN-AIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
.+|++++|+|++++ +.....++....... +.|+++|+||+|+.. ..........+.. .....+++++|++
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~ 152 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKE----LGPFAEIFPISAL 152 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHh----ccCCCceEEEEec
Confidence 89999999999876 222222333322221 689999999999974 3222333322211 2224678999999
Q ss_pred cCCCHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQL 184 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~ 184 (202)
++.|++++++.|.+.
T Consensus 153 ~~~~~~~l~~~l~~~ 167 (168)
T cd04163 153 KGENVDELLEEIVKY 167 (168)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999998764
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-23 Score=136.46 Aligned_cols=113 Identities=27% Similarity=0.384 Sum_probs=82.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC---CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
||+|+|++|||||||+++|.+..+. ...++.+.++....... ......+.+||++|++.+...+...+..+|++|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVV-DGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEE-TTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEe-cCCceEEEEEecCccceecccccchhhcCcEEEE
Confidence 7999999999999999999988776 22223333333222211 3444559999999999888887888999999999
Q ss_pred EEeCCCchhHHHHHHH---HHHHHccCCCCCCcEEEEeeCCC
Q psy1315 98 VIDSTDVERMEEVKIE---LIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~---~~~~~~~~~~~~~pvivv~nK~D 136 (202)
|||+++++++..+.++ +..+... ..+.|++||+||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 9999999999987654 3444332 34699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-23 Score=144.81 Aligned_cols=163 Identities=22% Similarity=0.212 Sum_probs=109.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--C---------------ccccccceeeEeecccc-cccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--N---------------TVPTIGFNCEKVKGQIG-KCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~ 78 (202)
++.++|+++|+.++|||||+.+|++.... . .....+.+......... ......+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 45789999999999999999999854321 0 00111222222111110 367789999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH---HHHHHhCchhh
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK---QIEKLLGLYEL 155 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~---~~~~~~~~~~~ 155 (202)
..+.......+..+|++|+|+|+.+.-.. .....+..+... +.|++||+||+|+....... ++...+- ...
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~----~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~-~~~ 154 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL----GIPIIVVLNKMDLIEKELEEIIEEIKEKLL-KEY 154 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT----T-SEEEEEETCTSSHHHHHHHHHHHHHHHH-HHT
T ss_pred cceeecccceecccccceeeeeccccccc-cccccccccccc----ccceEEeeeeccchhhhHHHHHHHHHHHhc-ccc
Confidence 99998888999999999999999865322 223333333333 78999999999998332211 1221110 111
Q ss_pred cCc--ceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 156 NNM--HLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 156 ~~~--~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
... ..++++++||.+|.|++++++.|.+.+
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 112 368999999999999999999998765
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=159.92 Aligned_cols=169 Identities=18% Similarity=0.198 Sum_probs=110.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSY 88 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~ 88 (202)
.+....|+++|.|+||||||+++|.+.+.. ..+.+++|.......+ ......|.+||+||... +......+
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv-~~~~~~f~laDtPGliegas~g~gLg~~fLrh 233 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVV-QAGDTRFTVADVPGLIPGASEGKGLGLDFLRH 233 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEE-EECCeEEEEEECCCCccccchhhHHHHHHHHH
Confidence 345578999999999999999999986532 2222233333332222 33456899999999432 11223345
Q ss_pred hcCCCEEEEEEeCCCc----hhHHHHHHHHHHHHccC----------CCCCCcEEEEeeCCCCCCCcCHHH-HHHHhCch
Q psy1315 89 TRCTDGIIFVIDSTDV----ERMEEVKIELIKTIKNN----------DNFNVPILILANKQDLPNAIQIKQ-IEKLLGLY 153 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~pvivv~nK~Dl~~~~~~~~-~~~~~~~~ 153 (202)
+.++|++|+|+|+++. +.+.....+..++..+. ....+|+|||+||+|+.+.....+ +...+
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l--- 310 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL--- 310 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH---
Confidence 6789999999999753 34444443333333221 123789999999999975433221 12111
Q ss_pred hhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHhhh
Q psy1315 154 ELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 192 (202)
...+++++++||++++|+++++++|.+.+...+...
T Consensus 311 ---~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~ 346 (500)
T PRK12296 311 ---EARGWPVFEVSAASREGLRELSFALAELVEEARAAE 346 (500)
T ss_pred ---HHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccc
Confidence 122568999999999999999999999988766543
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=151.68 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=108.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch--------hhHHhhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--------PLWKSYT 89 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~ 89 (202)
+.-.|+++|.+|||||||+|++++.......+...++........ ......+.+|||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIV-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEE-EcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 345699999999999999999999887655555554444433222 2244789999999964422 2334467
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
..+|++++|+|+++. +.....++...... .+.|+++|+||+|+... .........+.. .....+++++||
T Consensus 83 ~~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~----~~~~~~i~~iSA 153 (292)
T PRK00089 83 KDVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE----LMDFAEIVPISA 153 (292)
T ss_pred hcCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh----hCCCCeEEEecC
Confidence 889999999999862 22223333333332 26899999999999742 222222221110 123467999999
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILK 187 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~ 187 (202)
+++.|++++++++.+.+..
T Consensus 154 ~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCCCHHHHHHHHHHhCCC
Confidence 9999999999999988753
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=142.62 Aligned_cols=154 Identities=17% Similarity=0.195 Sum_probs=99.4
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCCCC----------Cc
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE----------KL 81 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~ 81 (202)
.....+.++|+++|++|+|||||++++.+..+ ..+.++.+.+.....+.. + ..+.+||+||.. .+
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~---~~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV-N---DGFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe-C---CcEEEEeCCCCccccCChhHHHHH
Confidence 33457889999999999999999999998864 455666666655444432 2 268999999942 23
Q ss_pred hhhHHhhhcC---CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCc
Q psy1315 82 RPLWKSYTRC---TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNM 158 (202)
Q Consensus 82 ~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 158 (202)
......+++. ++++++|+|++++-+..... .+ ..... .+.|+++|+||+|+............++...-...
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~-~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-ML-EWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HH-HHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 3333455543 58999999998654433332 22 22222 27899999999999754322222222211111112
Q ss_pred ceEEEEEeeeecCCCHH
Q psy1315 159 HLYYIQATCAITGDGLH 175 (202)
Q Consensus 159 ~~~~~~~~Sa~~~~~v~ 175 (202)
.+.+++++||++|+|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 34589999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=140.51 Aligned_cols=143 Identities=20% Similarity=0.127 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC----chhhHHhhhcCCCEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK----LRPLWKSYTRCTDGII 96 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~~~~~d~~i 96 (202)
+|+++|.+|+|||||++++.+.. ....++. ...+ ... .+||+||... +.......++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~~~~~-----~v~~---~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLARKTQ-----AVEF---NDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccCccce-----EEEE---CCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999987653 2111221 1122 111 2699999632 2222234478899999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|+|+++..++. ..|+... ..+.|+++++||+|+.+. ........+.. .....|++++||++++|+++
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~----~~~~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLE----TGFEEPIFELNSHDPQSVQQ 137 (158)
T ss_pred EEEeCCCccccc--CHHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHH----cCCCCCEEEEECCCccCHHH
Confidence 999999876652 2333332 126799999999998653 33333333221 11235899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 177 GINELYQLILKK 188 (202)
Q Consensus 177 l~~~l~~~~~~~ 188 (202)
+|+++.+.+.+.
T Consensus 138 l~~~l~~~~~~~ 149 (158)
T PRK15467 138 LVDYLASLTKQE 149 (158)
T ss_pred HHHHHHHhchhh
Confidence 999998887554
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=147.92 Aligned_cols=161 Identities=17% Similarity=0.251 Sum_probs=119.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--------chhhHHhhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--------LRPLWKSYT 89 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~ 89 (202)
+.--|+++|.|++|||||+|++++.+...+++-..+|...+..-+ ..+...+.++||||..+ +.......+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~-t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIV-TTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEE-EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 455789999999999999999999999888877777777776655 45578899999999432 233444556
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
..+|++++|+|+++. +.....++...++. .+.|+++++||+|...+.. ...+.+.+.. ......++++||
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~----~~~f~~ivpiSA 154 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKK----LLPFKEIVPISA 154 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHh----hCCcceEEEeec
Confidence 789999999999853 33334444444443 2689999999999887655 2333333221 233448999999
Q ss_pred ecCCCHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~ 188 (202)
++|.|++.+.+.+...+.+.
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred cccCCHHHHHHHHHHhCCCC
Confidence 99999999999998877554
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-22 Score=154.05 Aligned_cols=161 Identities=21% Similarity=0.215 Sum_probs=106.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC----chhh---HHhhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK----LRPL---WKSYTRCT 92 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~---~~~~~~~~ 92 (202)
..|+++|.|+||||||++++++.+.. ..+.+.+|.......+...+...+.+||+||..+ ...+ +...++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 38999999999999999999987632 1222222332222212112256799999999532 2223 33445669
Q ss_pred CEEEEEEeCCCc---hhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 93 DGIIFVIDSTDV---ERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 93 d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
+++|+|+|+++. ++++....|...+..+.. ..++|++||+||+|+... ...+.... ...+.+++++||
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~------~~l~~~i~~iSA 309 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFK------EKLGPKVFPISA 309 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHH------HHhCCcEEEEeC
Confidence 999999999754 566666666555554321 247899999999998432 12222221 111257899999
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++|+++++++|.+.+.+.+
T Consensus 310 ~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 310 LTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999886654
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=143.00 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=107.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCCCC----------Cchh
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE----------KLRP 83 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~ 83 (202)
.....++|+++|++|+|||||++++.+..+ ..+.++.+.+.....+.. ...+.+|||||.. .+..
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV----NDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec----CCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 345779999999999999999999998764 456667676654433321 3679999999942 2334
Q ss_pred hHHhhhcCC---CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 84 LWKSYTRCT---DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 84 ~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
....++..+ +++++|+|.+++..... .++...... .+.|+++++||+|+.+..........+.. .+ ....
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~-~l-~~~~ 168 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRK-AL-KFGD 168 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHH-HH-HhcC
Confidence 445555544 67888899876543322 122222222 26899999999999764333222221111 11 1125
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.+++++||+++.|++++++.|.+.+.
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 68899999999999999999987664
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-22 Score=155.10 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=102.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC---ccccccceeeEeecccccccceEEEEEEcCCCCCc--hhhH------Hh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN---TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL--RPLW------KS 87 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~------~~ 87 (202)
.++|+++|.+|+|||||+|+|.+..... ...|...+...+.+ .....+.+|||+|..+. ...+ ..
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l----~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~ 272 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV----ADVGETVLADTVGFIRHLPHDLVAAFKATLQ 272 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe----CCCCeEEEEecCcccccCCHHHHHHHHHHHH
Confidence 4689999999999999999999876431 12233333333333 12236789999997331 2222 23
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEE-EEEe
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY-IQAT 166 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 166 (202)
.++.+|++|+|+|++++.++.....+... +......+.|+++|+||+|+...... ..... ..+.+ ++++
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~i-L~el~~~~~pvIiV~NKiDL~~~~~~-~~~~~--------~~~~~~~v~I 342 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTV-LEEIDAHEIPTLLVMNKIDMLDDFEP-RIDRD--------EENKPIRVWL 342 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHH-HHHhccCCCCEEEEEEcccCCCchhH-HHHHH--------hcCCCceEEE
Confidence 46889999999999998777765432222 22212337899999999998653211 11110 01222 5789
Q ss_pred eeecCCCHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
||++|.|+++++++|.+.+..
T Consensus 343 SAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 343 SAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred eCCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999998753
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-22 Score=162.53 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=112.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC-------C-Ccc------ccccceeeEeecc--cc--cccceEEEEEEcCCCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY-------L-NTV------PTIGFNCEKVKGQ--IG--KCKGINFLIWDVGGQEK 80 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~-------~-~~~------~~~~~~~~~~~~~--~~--~~~~~~~~~~D~~G~~~ 80 (202)
.-+|+++|+.++|||||+++|+.... . .+. ...|.+....... .. ++..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 34899999999999999999986421 1 111 2235555432221 11 24458999999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+...+..+++.+|++|+|+|+++..+......|+... .. +.|+++|+||+|+...... .....+.. .+ ....
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~~----~ipiIiViNKiDl~~~~~~-~~~~el~~-~l-g~~~ 154 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-EN----DLEIIPVINKIDLPSADPE-RVKKEIEE-VI-GLDA 154 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-Hc----CCCEEEEEECcCCCccCHH-HHHHHHHH-Hh-CCCc
Confidence 9999999999999999999999876666655554433 22 6899999999998654322 11111110 01 1122
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..++++||++|.|++++|++|.+.+.
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 35899999999999999999988764
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-22 Score=160.01 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=107.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+..+|+++|++++|||||+++|.+..+... .+.+..+.....+.. .+...+.+|||||++.|..++...+..+|++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~--~~~~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVEN--EDGKMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEE--CCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 4678999999999999999999998776432 221111111122211 1222789999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchh-hcC--cceEEEEEeeeecCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYE-LNN--MHLYYIQATCAITGD 172 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~Sa~~~~ 172 (202)
|+|+|+++...-+. ...+.... ..+.|+++++||+|+.+.. ...+...+.... ... ....+++++||++|+
T Consensus 163 ILVVda~dgv~~qT-~e~i~~~~----~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 163 VLVVAADDGVMPQT-IEAISHAK----AANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEEECCCCCCHhH-HHHHHHHH----HcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 99999986322111 22222222 2378999999999996532 223333221111 111 123579999999999
Q ss_pred CHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQL 184 (202)
Q Consensus 173 ~v~~l~~~l~~~ 184 (202)
|++++++++..+
T Consensus 237 GI~eLl~~I~~~ 248 (587)
T TIGR00487 237 GIDELLDMILLQ 248 (587)
T ss_pred ChHHHHHhhhhh
Confidence 999999998753
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-22 Score=163.70 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=108.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
..+...|+++|+.++|||||+++|.+..+... ...+.+...-.+.+ ......++||||||++.|..++...++.+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~-e~~GIT~~iga~~v-~~~~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG-EAGGITQHIGAYQV-ETNGGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccc-ccCceeeeccEEEE-EECCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45788999999999999999999987665421 11122222211111 22346799999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc-hhhcC--cceEEEEEeeeecCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL-YELNN--MHLYYIQATCAITGD 172 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~Sa~~~~ 172 (202)
|+|+|+++...-.. ...+.... ..+.|+||++||+|+.+.. ...+...+.. ..+.. ...++++++||++|.
T Consensus 365 ILVVdAddGv~~qT-~e~i~~a~----~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~ 438 (787)
T PRK05306 365 VLVVAADDGVMPQT-IEAINHAK----AAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE 438 (787)
T ss_pred EEEEECCCCCCHhH-HHHHHHHH----hcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence 99999986422111 12222222 2378999999999996542 2222221111 11111 124789999999999
Q ss_pred CHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQL 184 (202)
Q Consensus 173 ~v~~l~~~l~~~ 184 (202)
|+++++++|...
T Consensus 439 GI~eLle~I~~~ 450 (787)
T PRK05306 439 GIDELLEAILLQ 450 (787)
T ss_pred CchHHHHhhhhh
Confidence 999999998764
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-22 Score=141.74 Aligned_cols=163 Identities=17% Similarity=0.019 Sum_probs=100.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC---C-Cc--cccccceeeEeecc-----------------------c-----ccc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY---L-NT--VPTIGFNCEKVKGQ-----------------------I-----GKC 65 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~---~-~~--~~~~~~~~~~~~~~-----------------------~-----~~~ 65 (202)
++|+++|+.|+|||||+..+.+... + +. ..+....+....+. . ...
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975521 1 11 11111111111110 0 000
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHH
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ 145 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~ 145 (202)
....+.+|||||++.+...+...+..+|++++|+|++++.........+...... ...|+++|+||+|+........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1267899999999988888888888999999999998632111111122222111 1357999999999975432222
Q ss_pred HHHHhCchhhc--CcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 146 IEKLLGLYELN--NMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 146 ~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
....+.. .+. ....++++++||++|+|++++++++.+.+.
T Consensus 158 ~~~~i~~-~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 158 NYEQIKK-FVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHH-HHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 1111110 010 123568999999999999999999987553
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=135.18 Aligned_cols=155 Identities=23% Similarity=0.189 Sum_probs=106.6
Q ss_pred EEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch-------hhHHhhhcCCCEEE
Q psy1315 24 MLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-------PLWKSYTRCTDGII 96 (202)
Q Consensus 24 v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~d~~i 96 (202)
++|++|+|||||++++.+.......+..+.+...............+.+||+||..... .....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876553333333333333332211226689999999966543 24445778899999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|+|.++..+..... +...... .+.|+++|+||+|+.............. .........+++++||.++.|+.+
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRL-LILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHH-hhcccccCCceEEEeeeccCCHHH
Confidence 999999877666554 3333322 3789999999999987654443321011 112244678899999999999999
Q ss_pred HHHHHHHH
Q psy1315 177 GINELYQL 184 (202)
Q Consensus 177 l~~~l~~~ 184 (202)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99998875
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-22 Score=156.80 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=103.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--------chhhHHhhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--------LRPLWKSYTRC 91 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 91 (202)
++|+++|.+|||||||+++|.+.....+....+.+........ ......+.+|||||... +......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~-~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEA-EWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEE-EECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 5899999999999999999998876444444455444333322 23447899999999876 33345667889
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE-EEEEeeeec
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY-YIQATCAIT 170 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 170 (202)
+|++|+|+|+.++.+... .++...+.. .+.|+++|+||+|+.+.. .....+.. .++ .++++||++
T Consensus 81 ad~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~-------lg~~~~~~iSa~~ 146 (435)
T PRK00093 81 ADVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYS-------LGLGEPYPISAEH 146 (435)
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHh-------cCCCCCEEEEeeC
Confidence 999999999986533322 122222222 178999999999975421 12222211 122 368999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLI 185 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~ 185 (202)
|.|++++++.+.+..
T Consensus 147 g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 147 GRGIGDLLDAILEEL 161 (435)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998733
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=161.48 Aligned_cols=163 Identities=21% Similarity=0.216 Sum_probs=111.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-c--ccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-V--PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
..+...|+++|++++|||||+++|....+... . .|.....+...+.. ......+.+|||||++.|..++..+++.+
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~-~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEY-KDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEe-cCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 34678999999999999999999988766421 1 11112222233322 23468899999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCch-hhcC--cceEEEEEeeee
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLY-ELNN--MHLYYIQATCAI 169 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~Sa~ 169 (202)
|++|+|+|+++....... ..+..+. ..+.|+||++||+|+.... ...+...+... .+.. ...++++++||+
T Consensus 320 DiaILVVDA~dGv~~QT~-E~I~~~k----~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 320 DIAILIIAADDGVKPQTI-EAINYIQ----AANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred CEEEEEEECcCCCChhhH-HHHHHHH----hcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 999999999864322221 1222222 2378999999999997642 22222222111 0111 124789999999
Q ss_pred cCCCHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLI 185 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~ 185 (202)
+|.|+++++++|....
T Consensus 394 tG~GIdeLle~I~~l~ 409 (742)
T CHL00189 394 QGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCHHHHHHhhhhhh
Confidence 9999999999988764
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-22 Score=157.30 Aligned_cols=153 Identities=21% Similarity=0.313 Sum_probs=107.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC--------CCchhhHHhhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ--------EKLRPLWKSYTRCT 92 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~~~~~~~~~ 92 (202)
+|+++|.+|||||||+|+|.+.....+.+..|++........ ......+.+|||||. +.+......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~-~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDA-EWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEE-EECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 589999999999999999998876555555666655444433 345567999999995 33445567778999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
|++++|+|..+...... ..+...++. .++|+++|+||+|+...... ...+. .....+++++||..|.
T Consensus 80 d~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~------~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 80 DVILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFY------SLGFGEPIPISAEHGR 146 (429)
T ss_pred CEEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHH------hcCCCCeEEEeCCcCC
Confidence 99999999986433322 122222222 27899999999998754321 11111 1122368999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILK 187 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~ 187 (202)
|++++++++.+.+..
T Consensus 147 gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 147 GIGDLLDAILELLPE 161 (429)
T ss_pred ChHHHHHHHHHhcCc
Confidence 999999999887744
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=162.87 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=111.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--------chhhHHhhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--------LRPLWKSYT 89 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~ 89 (202)
...+|+++|.++||||||+|+|++.....+.++.|++.+...... ......+.+|||||.+. +......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~-~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDA-EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEE-EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 447899999999999999999998876666677788877766544 34567899999999653 334556678
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+.+|++|+|+|+++. +......+...+.. .+.|+++|+||+|+..... ....+.. ...+ ..+++||+
T Consensus 353 ~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~-----lg~~-~~~~iSA~ 419 (712)
T PRK09518 353 SLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWK-----LGLG-EPYPISAM 419 (712)
T ss_pred HhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHH-----cCCC-CeEEEECC
Confidence 899999999999753 22222223332222 3799999999999864321 1122211 1112 24689999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILK 187 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~ 187 (202)
+|.|+++++++|.+.+..
T Consensus 420 ~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCchHHHHHHHHhccc
Confidence 999999999999998754
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=150.40 Aligned_cols=166 Identities=17% Similarity=0.123 Sum_probs=110.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSYTRCT 92 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 92 (202)
..|+++|.||||||||+|+|++.+. ..++.+.+|.......+...+...+.++|+||..+ .......+++.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 3799999999999999999998753 33333444444433333122334689999999543 222333467889
Q ss_pred CEEEEEEeCC---CchhHHHHHHHHHHHHccC-CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 93 DGIIFVIDST---DVERMEEVKIELIKTIKNN-DNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 93 d~~ilv~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
|++++|+|++ +.+.++....++..+.... ...+.|+++|+||+|+............+. .. .....+++++||
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~-~~--~~~~~~Vi~ISA 315 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIV-EA--LGWEGPVYLISA 315 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHH-HH--hCCCCCEEEEEC
Confidence 9999999987 4456666665665555431 123689999999999975433222211111 00 111236899999
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~ 189 (202)
+++.|++++++.|.+.+.+..
T Consensus 316 ~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 316 ASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred CCCcCHHHHHHHHHHHhhhCc
Confidence 999999999999999887653
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=157.65 Aligned_cols=158 Identities=22% Similarity=0.155 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC---CC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ---YL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
+.|+++|++++|||||+++|.+.. ++ +..++.........+ ......+.+||+||++.|...+..++.++|++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~---~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~a 77 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYF---PLPDYRLGFIDVPGHEKFISNAIAGGGGIDAA 77 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEE---EeCCEEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence 468999999999999999999743 22 122222222222222 22347899999999999998888999999999
Q ss_pred EEEEeCCCc---hhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCHHHHHHHhCc--hhhcCcceEEEEEeeee
Q psy1315 96 IFVIDSTDV---ERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQIKQIEKLLGL--YELNNMHLYYIQATCAI 169 (202)
Q Consensus 96 ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~ 169 (202)
++|+|+++. .+.+.+ ..+ .. .+.| ++||+||+|+.+..........+.. .......+.+++++||+
T Consensus 78 ILVVDa~~G~~~qT~ehl----~il-~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 78 LLVVDADEGVMTQTGEHL----AVL-DL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEEECCCCCcHHHHHHH----HHH-HH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 999999873 333322 222 21 1567 9999999999765432222221111 01111125789999999
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILKK 188 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~ 188 (202)
+|.|++++++.+...+...
T Consensus 150 tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 150 TGQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCCchhHHHHHHHHHHhC
Confidence 9999999999988776543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-22 Score=151.87 Aligned_cols=152 Identities=20% Similarity=0.322 Sum_probs=114.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC---------chhhHHhhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---------LRPLWKSYTR 90 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~ 90 (202)
..|+++|.|+||||||+|+|.+.+..-+...+|+|.+...... ......|.++||+|.+. ...+....+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~-~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDA-EWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCcccee-EEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999988999999999888766 55667799999999542 2345666788
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
.||++|||+|... ........+...++. .++|+++|+||+|-... .....++. ...-...+++||..
T Consensus 83 eADvilfvVD~~~--Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~--e~~~~efy------slG~g~~~~ISA~H 149 (444)
T COG1160 83 EADVILFVVDGRE--GITPADEEIAKILRR---SKKPVILVVNKIDNLKA--EELAYEFY------SLGFGEPVPISAEH 149 (444)
T ss_pred hCCEEEEEEeCCC--CCCHHHHHHHHHHHh---cCCCEEEEEEcccCchh--hhhHHHHH------hcCCCCceEeehhh
Confidence 8999999999974 233333333333332 16999999999996522 11222222 22334578999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLI 185 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~ 185 (202)
|.|+.+|+++++..+
T Consensus 150 g~Gi~dLld~v~~~l 164 (444)
T COG1160 150 GRGIGDLLDAVLELL 164 (444)
T ss_pred ccCHHHHHHHHHhhc
Confidence 999999999999987
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=145.61 Aligned_cols=157 Identities=24% Similarity=0.274 Sum_probs=122.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh--------HHh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL--------WKS 87 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~ 87 (202)
....++++++|.||+|||||+|.|.+.....+++..|+|.+.+...+ +-+.+.+.++||+|..+.... ...
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i-~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDI-NLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEE-EECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999888 788999999999995433222 334
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
.++.+|.+++|+|.+.+.+-.... +... ...++|+++|.||.|+......... . ...+.+++.+|
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~--~~~~----~~~~~~~i~v~NK~DL~~~~~~~~~-~--------~~~~~~~i~iS 357 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLA--LIEL----LPKKKPIIVVLNKADLVSKIELESE-K--------LANGDAIISIS 357 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHH--HHHh----cccCCCEEEEEechhcccccccchh-h--------ccCCCceEEEE
Confidence 568899999999998752222211 1111 3347999999999999876553333 1 12344789999
Q ss_pred eecCCCHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~ 188 (202)
+++++|++.+.+.|.+.+...
T Consensus 358 a~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 358 AKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ecCccCHHHHHHHHHHHHhhc
Confidence 999999999999998877654
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-21 Score=158.00 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=110.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh----------HHh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL----------WKS 87 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----------~~~ 87 (202)
+.++|+++|+||||||||+|++.+... .+.+..|.|........ ......+.+||+||..++... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEE-EcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 357899999999999999999998754 34556777777665544 456778999999997655321 222
Q ss_pred hh--cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 88 YT--RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 88 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
++ ..+|++++|+|.++.+.... ++.++... +.|+++|+||+|+.+........+. +.+..++++++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l~---l~~ql~e~----giPvIvVlNK~Dl~~~~~i~id~~~-----L~~~LG~pVvp 147 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNLY---LTLQLLEL----GIPCIVALNMLDIAEKQNIRIDIDA-----LSARLGCPVIP 147 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhHH---HHHHHHHc----CCCEEEEEEchhhhhccCcHHHHHH-----HHHHhCCCEEE
Confidence 32 47999999999987554332 33333332 7999999999998754332221121 12334678999
Q ss_pred eeeecCCCHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+||.+++|++++.+.+.+..
T Consensus 148 iSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 148 LVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEeecCCCHHHHHHHHHHhh
Confidence 99999999999999987764
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-21 Score=152.14 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=104.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC------------------------------ccccccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN------------------------------TVPTIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 65 (202)
.++.++|+++|++++|||||+++|++..... .....|+|.+.....+ ..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~-~~ 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKF-ET 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEE-ec
Confidence 4678999999999999999999998543211 0112455555555444 45
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC---
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--- 142 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--- 142 (202)
+.+.+.+|||||++.+.......+..+|++|+|+|+++..++.....+...+.... ...|+++|+||+|+.+...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHH
Confidence 67899999999998887766666788999999999986323322222222222221 1346999999999975221
Q ss_pred ---HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 143 ---IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 143 ---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
..++...+....+ .....+++++||++|+|++++.
T Consensus 160 ~~~~~~i~~~l~~~g~-~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGY-KPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCC-CcCcceEEEeecccCCCccccc
Confidence 1122222221111 1124789999999999998754
|
|
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=121.67 Aligned_cols=177 Identities=20% Similarity=0.221 Sum_probs=130.1
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC---CccccccceeeEeecccccccceEEEEEEcCCCCCc-hhhHHhhh
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL-RPLWKSYT 89 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-~~~~~~~~ 89 (202)
.+..+.-|++++|..++|||+++.++...... +..||++-.+. ..+..+.+..-.+.+.||.|-... ..+-.+|+
T Consensus 4 ~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~-~svet~rgarE~l~lyDTaGlq~~~~eLprhy~ 82 (198)
T KOG3883|consen 4 AKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYV-ASVETDRGAREQLRLYDTAGLQGGQQELPRHYF 82 (198)
T ss_pred hhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhee-EeeecCCChhheEEEeecccccCchhhhhHhHh
Confidence 34567889999999999999999999876553 44566543222 222222344557899999996655 56777889
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+-+|++++|||..+++||+.+...-..+-+......+|++|++||+|+.++.......+ ..|+....+.++++++.
T Consensus 83 q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A----~~Wa~rEkvkl~eVta~ 158 (198)
T KOG3883|consen 83 QFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVA----QIWAKREKVKLWEVTAM 158 (198)
T ss_pred ccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHH----HHHHhhhheeEEEEEec
Confidence 99999999999999999988765555555554566899999999999975543322222 24556677899999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhh
Q psy1315 170 TGDGLHEGINELYQLILKKRKLQKTN 195 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~~~~~~~ 195 (202)
+...+-+-|..+...+..-..+...+
T Consensus 159 dR~sL~epf~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 159 DRPSLYEPFTYLASRLHQPQSKSTFP 184 (198)
T ss_pred cchhhhhHHHHHHHhccCCcccccCc
Confidence 99999999999988776554444333
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=151.57 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=111.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--------------CccccccceeeE----eecccccccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--------------NTVPTIGFNCEK----VKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~~G~ 78 (202)
++.-+|+++|+.++|||||+.+|+..... +.....|.+... ..+...++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 34569999999999999999999863210 011223444332 222111345789999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCc
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNM 158 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 158 (202)
.++...+..+++.+|++|+|+|+++.........|... .. .+.|+++|+||+|+.............. .+ ..
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~--~l-g~ 156 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NDLEIIPVLNKIDLPAADPERVKQEIED--VI-GI 156 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEEECCCCCcccHHHHHHHHHH--Hh-CC
Confidence 99999999999999999999999876555544433332 22 2689999999999865432211111111 01 11
Q ss_pred ceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 159 HLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 159 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
....++++||++|.|+++++++|.+.+..
T Consensus 157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 157 DASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 22358999999999999999999987653
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-21 Score=137.34 Aligned_cols=151 Identities=17% Similarity=0.125 Sum_probs=93.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCcc------------------------------ccccceeeEeecccccccceEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTV------------------------------PTIGFNCEKVKGQIGKCKGINF 70 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 70 (202)
+|+++|++|+|||||+++|++....... ...|++........ ......+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF-STPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE-ecCCceE
Confidence 5899999999999999999764322110 01234444333322 3456688
Q ss_pred EEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHH
Q psy1315 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEK 148 (202)
Q Consensus 71 ~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~ 148 (202)
.+|||||++++.......++.+|++|+|+|++++..-.. ...+ .+.... ...++|+|+||+|+.+... ...+..
T Consensus 80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 999999998877767777899999999999986432111 1111 222221 1245788999999875321 111111
Q ss_pred HhCc--hhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 149 LLGL--YELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 149 ~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
.+.. ..+ .....+++++||++|.|+.+.
T Consensus 156 ~~~~~~~~~-~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKL-GIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHc-CCCCceEEEEeCCCCCCCccC
Confidence 1110 011 112357999999999998753
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-21 Score=154.61 Aligned_cols=146 Identities=21% Similarity=0.278 Sum_probs=99.7
Q ss_pred cCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh------HHhhh--cCCCEEEE
Q psy1315 26 GLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL------WKSYT--RCTDGIIF 97 (202)
Q Consensus 26 G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~d~~il 97 (202)
|++|||||||+|++.+... ...+..+.|........ ..+...+++|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i-~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKL-GFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEE-EECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998765 33344455554433322 234457899999998766443 34443 36899999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|+|.++.+.. ..+..++.. .+.|+++|+||+|+.+........+ .+.+..+.+++++||++|+|++++
T Consensus 79 VvDat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~-----~L~~~lg~pvv~tSA~tg~Gi~eL 146 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEE-----KLEERLGVPVVPTSATEGRGIERL 146 (591)
T ss_pred EecCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHH-----HHHHHcCCCEEEEECCCCCCHHHH
Confidence 9999864332 223333332 2789999999999865433221111 122344678999999999999999
Q ss_pred HHHHHHHH
Q psy1315 178 INELYQLI 185 (202)
Q Consensus 178 ~~~l~~~~ 185 (202)
++++.+..
T Consensus 147 ~~~i~~~~ 154 (591)
T TIGR00437 147 KDAIRKAI 154 (591)
T ss_pred HHHHHHHh
Confidence 99998764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-20 Score=134.12 Aligned_cols=159 Identities=21% Similarity=0.231 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC--------------Cc---cccccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL--------------NT---VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
+|+++|++|+|||||++++++.... +. ....+.+........ ......+.+|||||+..+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~-~~~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF-QWEDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE-EECCEEEEEEeCCCccchHH
Confidence 5899999999999999999864211 00 111223333222222 45678899999999999999
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC---HHHHHH------------
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ---IKQIEK------------ 148 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~---~~~~~~------------ 148 (202)
.+..+++.+|++++|+|+.+.... ....++...... +.|+++++||+|+..... ..+++.
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~----~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p 154 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL----NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKV 154 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc----CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECC
Confidence 999999999999999999875432 233344444332 789999999999874211 111111
Q ss_pred ------------------------------HhCc-------------hhhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 149 ------------------------------LLGL-------------YELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 149 ------------------------------~~~~-------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
++.- .......-+|++..||.++.|++.+++.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 155 GLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred cEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 1110 011134568899999999999999999998765
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=149.51 Aligned_cols=160 Identities=15% Similarity=0.111 Sum_probs=103.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC--CC----------------------------ccccccceeeEeeccccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY--LN----------------------------TVPTIGFNCEKVKGQIGK 64 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~ 64 (202)
..++.++|+++|+.++|||||+.+|+.... .. .....|.+.+.....+ .
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~-~ 81 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF-E 81 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE-c
Confidence 356789999999999999999999985321 10 0112244444443333 4
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQ- 142 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~- 142 (202)
...+.+.+||+||+++|.......+..+|++|+|+|+++.+++.... .+...+... ....|++||+||+|+.+...
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEEChhccCccHH
Confidence 56788999999999888777777788999999999999875332111 111122222 12357999999999974221
Q ss_pred -H----HHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 143 -I----KQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 143 -~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
. .++...+....+ ....++++++||++|.|+.+.+
T Consensus 160 ~~~~~~~ei~~~~~~~g~-~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGY-NPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHHcCC-CcccceEEEeeccccccccccc
Confidence 1 122222221111 1234789999999999998744
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-20 Score=149.19 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=115.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC--CCCC-------------ccccccceeeEeecccccccceEEEEEEcCCCCCch
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD--QYLN-------------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 82 (202)
+.-+|+++|+.++|||||+++|++. .+.. ...+.|.+.......+ ..+.+.+++|||||+..|.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i-~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI-KWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE-ecCCEEEEEEECCCcchhH
Confidence 4568999999999999999999863 2211 1234566665554444 5677899999999999999
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH---HHHHHhCc-hhhcCc
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK---QIEKLLGL-YELNNM 158 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~---~~~~~~~~-~~~~~~ 158 (202)
..+..+++.+|++|+|+|+.+.. ......++...... +.|.++|+||+|+....... ++...+.. ......
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~~----gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFAY----GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHHc----CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 99999999999999999998642 22333344443333 78999999999997654332 23332211 111123
Q ss_pred ceEEEEEeeeecCC----------CHHHHHHHHHHHHH
Q psy1315 159 HLYYIQATCAITGD----------GLHEGINELYQLIL 186 (202)
Q Consensus 159 ~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 186 (202)
..+|++++||.+|. |+..+++.|++.+.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 45889999999998 58888888777654
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-20 Score=148.27 Aligned_cols=161 Identities=24% Similarity=0.234 Sum_probs=106.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-----ccccccceeeEeecccc-----------cccceEEEEEEcCCCCCch
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-----TVPTIGFNCEKVKGQIG-----------KCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~G~~~~~ 82 (202)
..-|+++|++++|||||+++|.+..+.. ..++.|.+......... ......+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 4579999999999999999999876642 23334433322211000 0011248899999999999
Q ss_pred hhHHhhhcCCCEEEEEEeCCC---chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--------------CHHH
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTD---VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--------------QIKQ 145 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--------------~~~~ 145 (202)
.++..+++.+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+.... ....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH----cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 999999999999999999986 33443322 1111 278999999999996421 0000
Q ss_pred HHH-----------HhCchhh---------cCcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 146 IEK-----------LLGLYEL---------NNMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 146 ~~~-----------~~~~~~~---------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
+.. .+....+ ......+++++||++|+|++++++++..+..+
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 100 0111111 01235799999999999999999998765543
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-20 Score=150.52 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=114.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC--CCCC-------------ccccccceeeEeecccccccceEEEEEEcCCCCCchhhH
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD--QYLN-------------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLW 85 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 85 (202)
+|+++|+.++|||||+.+|+.. .+.. .....|.+.......+ ....+.+++|||||+.+|...+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v-~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI-RYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE-EECCEEEEEEECCCHHHHHHHH
Confidence 7999999999999999999863 2211 1122345555444333 5567899999999999999999
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH---HHHHHHhCchhh-cCcceE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI---KQIEKLLGLYEL-NNMHLY 161 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~ 161 (202)
..+++.+|++++|+|+.+. .......++...... ++|+++|+||+|+...... .++...+..... .....+
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~----~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL----GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC----CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 9999999999999999863 344445566655543 7899999999998754322 223332211111 123457
Q ss_pred EEEEeeeecCC----------CHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGD----------GLHEGINELYQLIL 186 (202)
Q Consensus 162 ~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 186 (202)
|++++||++|. |+..+|+.+++.+.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 89999999996 79999999888764
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=126.51 Aligned_cols=152 Identities=20% Similarity=0.159 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCCCCC----------chhhHHhhh
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK----------LRPLWKSYT 89 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~ 89 (202)
.|+++|++|+|||||++.+.+..+ ....++.+.+.....+.. . ..+.+||+||... +......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-N---DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-c---CeEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 389999999999999999996544 355666666555544432 1 2889999999433 233444444
Q ss_pred c---CCCEEEEEEeCCCchhHH--HHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc-CcceEEE
Q psy1315 90 R---CTDGIIFVIDSTDVERME--EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN-NMHLYYI 163 (202)
Q Consensus 90 ~---~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~ 163 (202)
. +.+++++++|.++..+.. .+..++.. . +.|+++|+||+|+............+.. .+. .....++
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~----~~~vi~v~nK~D~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 148 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L----GIPFLVVLTKADKLKKSELAKALKEIKK-ELKLFEIDPPI 148 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c----CCCEEEEEEchhcCChHHHHHHHHHHHH-HHHhccCCCce
Confidence 4 357889999987543222 22222221 1 5899999999998654332222222211 111 2345679
Q ss_pred EEeeeecCCCHHHHHHHHHHH
Q psy1315 164 QATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
+++||+++.|+.+++++|.+.
T Consensus 149 ~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 149 ILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHHh
Confidence 999999999999999998765
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=125.38 Aligned_cols=160 Identities=16% Similarity=0.233 Sum_probs=113.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCC----------CCCchhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----------QEKLRPL 84 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~ 84 (202)
.+...-|+++|.++||||||+|+|++++. ..++.|+|.|.....+...+ .+.++|.|| .+.+..+
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~----~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD----ELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC----cEEEEeCCCcccccCCHHHHHHHHHH
Confidence 34677999999999999999999999764 68899999999888886522 278999999 3455666
Q ss_pred HHhhhcC---CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH----HHHHHhCchhhcC
Q psy1315 85 WKSYTRC---TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK----QIEKLLGLYELNN 157 (202)
Q Consensus 85 ~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~ 157 (202)
...|++. -.++++++|...+ ....+..+.+.+... +.|++|++||+|........ .+...+....
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~~---~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~--- 168 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLEL---GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP--- 168 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHHc---CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC---
Confidence 7777765 4678888888643 333333333333322 89999999999998764443 2332322211
Q ss_pred cceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 158 MHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
....-++..|+.++.|++++.+.|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 111117888999999999999998887654
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=131.61 Aligned_cols=152 Identities=22% Similarity=0.246 Sum_probs=96.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc-------hhhHHhhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL-------RPLWKSYTRCTD 93 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~d 93 (202)
+|+++|.+|+|||||+++|.+.... .......+.......+ ......+++||+||..+. ......+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVL-EYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEE-EECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 6899999999999999999987532 1111111211111111 234578999999996432 224456789999
Q ss_pred EEEEEEeCCCchh-HHHHHHHHH----------------------------------------HHHccC-----------
Q psy1315 94 GIIFVIDSTDVER-MEEVKIELI----------------------------------------KTIKNN----------- 121 (202)
Q Consensus 94 ~~ilv~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~----------- 121 (202)
++++|+|+++++. ...+...+. .+++.+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999987542 222222111 001000
Q ss_pred -------------CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 122 -------------DNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 122 -------------~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
...-.|+++|+||+|+.... +.... +.. .+++++||+++.|++++++.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~---~~~~~------~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE---ELDLL------ARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHH---HHHHH------hcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 01136999999999986532 22221 111 2478999999999999999998765
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=128.84 Aligned_cols=150 Identities=18% Similarity=0.199 Sum_probs=97.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC------------C---CccccccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY------------L---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
+++|+++|+.++|||||+++|++... . ......|.+.......+ ..+...+.++||||+..+..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~-~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEY-ETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEe-cCCCeEEEEEECcCHHHHHH
Confidence 58999999999999999999986310 0 01112345544444433 34567889999999988887
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcC-HH----HHHHHhCchhhcC
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQ-IK----QIEKLLGLYELNN 157 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~ 157 (202)
.....+..+|++++|+|+...-. ......+..+... +.| +|+|+||+|+..... .. ++...+....+ .
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~----~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~-~ 154 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV----GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF-D 154 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc-c
Confidence 77888889999999999975321 2222233333332 566 789999999964322 11 12222221111 2
Q ss_pred cceEEEEEeeeecCCCHH
Q psy1315 158 MHLYYIQATCAITGDGLH 175 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~ 175 (202)
..+.+++++||.+|.|+.
T Consensus 155 ~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 155 GDNTPIVRGSALKALEGD 172 (195)
T ss_pred ccCCeEEEeeCccccCCC
Confidence 246899999999999853
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=120.56 Aligned_cols=157 Identities=22% Similarity=0.313 Sum_probs=119.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc---------c----ccccceeeEeecccccccceEEEEEEcCCCCCch
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT---------V----PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 82 (202)
.....||+|.|+.++||||+++++.......+ . .|.+..+-.+.+ .....+.++|||||+++.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~----~~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL----DEDTGVHLFGTPGQERFK 82 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE----cCcceEEEecCCCcHHHH
Confidence 44678999999999999999999988763211 0 122222222322 344678999999999999
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEE
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY 162 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (202)
.+|..+.+.+.++|+++|.+.+..+ .....+ ....... ..|++|.+||.|+.+...++.+++.+.... .+.+
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii-~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~----~~~~ 154 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEII-DFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL----LSVP 154 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHH-HHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc----CCCc
Confidence 9999999999999999999988887 333222 3333211 299999999999999999999998775421 4789
Q ss_pred EEEeeeecCCCHHHHHHHHHHH
Q psy1315 163 IQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 163 ~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.++.+|.++++..+.++.+...
T Consensus 155 vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 155 VIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeeecccchhHHHHHHHHHhh
Confidence 9999999999999988877654
|
|
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-22 Score=135.50 Aligned_cols=183 Identities=20% Similarity=0.229 Sum_probs=141.6
Q ss_pred cchHHHHHHhhcC-CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 3 KNSAAFFENLQAS-GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 3 ~~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
.-.+.+.+...+. ....+++.|+|.-|+|||+++.+++...|+ .+..++|..+........+...+++++||..|+++
T Consensus 8 ~~~~~~a~a~ap~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQer 87 (229)
T KOG4423|consen 8 SGISRIARASAPKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQER 87 (229)
T ss_pred cchhhhhhcCCCchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhh
Confidence 3344443333333 357899999999999999999999988886 67788887776666655456678899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCC---CCCcEEEEeeCCCCCCCc---CHHHHHHHhCchh
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN---FNVPILILANKQDLPNAI---QIKQIEKLLGLYE 154 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~pvivv~nK~Dl~~~~---~~~~~~~~~~~~~ 154 (202)
+..+..-|++.+++..+|||+++.-.|+....|...+-..... ...|+|+.+||||..... ....+..+.+
T Consensus 88 fg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k--- 164 (229)
T KOG4423|consen 88 FGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK--- 164 (229)
T ss_pred hcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh---
Confidence 9999999999999999999999999999999998887654433 357889999999975432 2223333322
Q ss_pred hcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 155 LNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+..-..++++|++.+.|++|+.+.+++.+.....
T Consensus 165 --engf~gwtets~Kenkni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 165 --ENGFEGWTETSAKENKNIPEAQRELVEKILVNDE 198 (229)
T ss_pred --ccCccceeeeccccccChhHHHHHHHHHHHhhcc
Confidence 2233568999999999999999999998876653
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=142.22 Aligned_cols=167 Identities=20% Similarity=0.065 Sum_probs=104.4
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeE----eec--------------c--ccc-----cc
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEK----VKG--------------Q--IGK-----CK 66 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~----~~~--------------~--~~~-----~~ 66 (202)
.+.++.++|+++|+.++|||||+.+|.+...+ ......|.+... ..+ . ... ..
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 45678899999999999999999999653211 111111222211 010 0 000 01
Q ss_pred ceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH--
Q psy1315 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK-- 144 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-- 144 (202)
...+.+||+||++.+..........+|++++|+|++++.........+..+... ...|+++|+||+|+.+.....
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII---GIKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEEeeccccchhHHHH
Confidence 367999999999887776666667789999999998643111111122222111 134789999999997643322
Q ss_pred --HHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 145 --QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
++...+... ...+.+++++||+++.|++++++.|.+.+.
T Consensus 161 ~~~i~~~l~~~---~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 161 YEQIKEFVKGT---VAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHhccc---cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 222222110 123578999999999999999999987654
|
|
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-20 Score=125.95 Aligned_cols=161 Identities=19% Similarity=0.191 Sum_probs=135.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...++++++|+.|.|||+++++++.+.|. .+.+|.|.......+.- +...+.|..|||.|++.+......|+-.+.++
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~t-n~g~irf~~wdtagqEk~gglrdgyyI~~qcA 86 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDT-NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCA 86 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeec-ccCcEEEEeeecccceeecccccccEEeccee
Confidence 45899999999999999999999999987 67899998888877755 44579999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|++||++..-.+.++.+|...+.+.. .++|+++||||.|........ +...+-...++.+++.||+++.|..
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~------k~v~~~rkknl~y~~iSaksn~Nfe 158 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKA------KPVSFHRKKNLQYYEISAKSNYNFE 158 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccccc------ccceeeecccceeEEeecccccccc
Confidence 99999998888999999999988863 379999999999976543111 1112334578899999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 176 EGINELYQLIL 186 (202)
Q Consensus 176 ~l~~~l~~~~~ 186 (202)
.-|.|+.+.+.
T Consensus 159 kPFl~LarKl~ 169 (216)
T KOG0096|consen 159 RPFLWLARKLT 169 (216)
T ss_pred cchHHHhhhhc
Confidence 99999988764
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=141.82 Aligned_cols=164 Identities=19% Similarity=0.082 Sum_probs=104.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCc--cccccceeeEe------------------eccc-ccc------cceE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNT--VPTIGFNCEKV------------------KGQI-GKC------KGIN 69 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~--~~~~~~~~~~~------------------~~~~-~~~------~~~~ 69 (202)
++.++|+++|++++|||||+++|.+...... ....+.+...- +... .+. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4678999999999999999999975422111 00011111100 0000 001 2467
Q ss_pred EEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH----H
Q psy1315 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK----Q 145 (202)
Q Consensus 70 ~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~ 145 (202)
+.+||+||++.|...+......+|++++|+|+++..........+..+ .. ....|+++|+||+|+.+..... +
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EI--IGIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HH--cCCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888899999999998643112222222222 21 1135789999999997643322 2
Q ss_pred HHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 146 IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+...+.. . ...+++++++||++|+|+++++++|...+.
T Consensus 159 i~~~l~~--~-~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKG--T-VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhh--c-ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 2222211 0 123578999999999999999999987653
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=146.58 Aligned_cols=163 Identities=18% Similarity=0.136 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+-|+++|+.++|||||+++|.+...+ ......|.|...........+...+.+||+||++.|.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999864321 1111123333322111111234468999999999998888888899999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCHHHHHHHhCchhh-cCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQIKQIEKLLGLYEL-NNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|+|+++.- .......+ .+.... +.| ++||+||+|+.+..........+....- ......+++++||++|.|++
T Consensus 81 VVda~eg~-~~qT~ehl-~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 81 VVACDDGV-MAQTREHL-AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEECCCCC-cHHHHHHH-HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 99998631 11212222 222221 455 5799999999764333222222211000 01124689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 176 EGINELYQLILK 187 (202)
Q Consensus 176 ~l~~~l~~~~~~ 187 (202)
++++.|.+....
T Consensus 156 ~L~~~L~~~~~~ 167 (614)
T PRK10512 156 ALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHhhcc
Confidence 999999876543
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-20 Score=133.04 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=95.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeecccccccceEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGKCKGINF 70 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (202)
+|+++|++++|||||+.+|+..... ......|++.+.....+ ......+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~-~~~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKF-ETEKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEE-eeCCeEE
Confidence 5899999999999999999643110 00112244444444444 4567889
Q ss_pred EEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchh------HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-C-
Q psy1315 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVER------MEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-Q- 142 (202)
Q Consensus 71 ~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s------~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~- 142 (202)
.+|||||+..+...+...++.+|++|+|+|+++... .......+... .. ....|+++|+||+|+.... .
T Consensus 80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccH
Confidence 999999988777777777888999999999987421 11122222222 21 1236899999999997421 1
Q ss_pred --HHHHHHHhC--chhhc-CcceEEEEEeeeecCCCHH
Q psy1315 143 --IKQIEKLLG--LYELN-NMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 143 --~~~~~~~~~--~~~~~-~~~~~~~~~~Sa~~~~~v~ 175 (202)
...+...+. +..+. ...+++++++||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 122222221 01110 1235889999999999987
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-19 Score=143.56 Aligned_cols=162 Identities=22% Similarity=0.197 Sum_probs=105.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-----cccccceeeEeecccc-cccc-----e-----EEEEEEcCCCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-----VPTIGFNCEKVKGQIG-KCKG-----I-----NFLIWDVGGQEK 80 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~-----~-----~~~~~D~~G~~~ 80 (202)
.++..|+++|++++|||||++++.+...... .++.|.+......... .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3567899999999999999999987654322 2344433332221000 0000 1 278999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCC---chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--------------H
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTD---VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--------------I 143 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~ 143 (202)
|..++...+..+|++|+|+|+++ +.++..+. .+.. .+.|+++++||+|+..... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~----~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR----RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH----cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 99999888899999999999986 44444332 1111 2789999999999852100 0
Q ss_pred HH-----------HHHHhCchhhc---------CcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 144 KQ-----------IEKLLGLYELN---------NMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 144 ~~-----------~~~~~~~~~~~---------~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.. +...+....+. .....+++++||.+|+|++++++.+...+.
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~ 218 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ 218 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence 00 01111111110 124578999999999999999998875443
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-19 Score=128.36 Aligned_cols=158 Identities=20% Similarity=0.210 Sum_probs=99.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCc-----------------ccc-------ccceeeEe--ec----------cccc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-----------------VPT-------IGFNCEKV--KG----------QIGK 64 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~-----------------~~~-------~~~~~~~~--~~----------~~~~ 64 (202)
+|+++|+.++|||||+.+|....+... ..+ .|++.... .+ ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999987554321 011 11111000 00 0001
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhc--CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTR--CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
.....+.++|+||++.+.......+. .+|++++|+|+++... .....++..+... ++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~----~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL----NIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEECccccCHHH
Confidence 23567899999999888766555554 6899999999975432 2222233333332 689999999999865433
Q ss_pred HHH----HHHHhCchh--------------------hcCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 143 IKQ----IEKLLGLYE--------------------LNNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 143 ~~~----~~~~~~~~~--------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
... +...+.... .......|+|.+||.+|+|++++.+.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 222 223332111 01123458999999999999999988754
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-20 Score=143.23 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=124.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
...+.++|+++|+.|+|||||+-++....+++..|... ....+...+ ..+.+...++|++..+.-.......++.+|+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl-~~i~IPadv-tPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRILIPADV-TPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccC-CccccCCcc-CcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 45678999999999999999999999999876554432 111222222 4556678999999777766777888999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCC--CCCCcEEEEeeCCCCCCCcCH--HH-HHHHhCchhhcCcceEEEEEeeee
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNND--NFNVPILILANKQDLPNAIQI--KQ-IEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+.++|+++++++++.+...|+.++++.. ..+.|+|+||||+|....... +. +...+.. ...-..+++|||+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~----f~EiEtciecSA~ 158 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA----FAEIETCIECSAL 158 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH----hHHHHHHHhhhhh
Confidence 9999999999999999999998888743 148999999999999765332 11 2222111 1122357999999
Q ss_pred cCCCHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLIL 186 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~ 186 (202)
+-.++.++|....+++.
T Consensus 159 ~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 159 TLANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhhHhhhhhhhheee
Confidence 99999999988766553
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=126.98 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=78.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--Cc---------cc----------cccceeeEeecccccccceEEEEEEcCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NT---------VP----------TIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~---------~~----------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
-+|+++|++|+|||||+++|++.... .. .. ..+.+.......+ ....+.+++|||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~-~~~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQF-EYRDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEE-eeCCEEEEEEECCCc
Confidence 47999999999999999999853211 00 00 0122222222222 456789999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.++......+++.+|++|+|+|+++.... ....++..... .++|+++++||+|+...
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~----~~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL----RGIPIITFINKLDREGR 138 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh----cCCCEEEEEECCccCCC
Confidence 98888778888999999999999864322 22233333222 27899999999998654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-19 Score=117.03 Aligned_cols=134 Identities=22% Similarity=0.265 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC----CCCchhhHHhhhcCCCEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----QEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----~~~~~~~~~~~~~~~d~~i 96 (202)
||.++|+.|||||||+++|.+... .+..|..+. + . =.++|||| +..+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~-----~---~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIE-----Y---Y-----DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeE-----e---c-----ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999987643 222332221 1 1 13579999 3445555666678899999
Q ss_pred EEEeCCCchh-HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC-CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVER-MEEVKIELIKTIKNNDNFNVPILILANKQDLP-NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|.|++++.+ |..- +. ...+.|+|-|+||+|+. ++...+.....+..... . .+|++|+.+|+|+
T Consensus 69 ll~dat~~~~~~pP~---fa------~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~---~--~if~vS~~~~eGi 134 (143)
T PF10662_consen 69 LLQDATEPRSVFPPG---FA------SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGV---K--EIFEVSAVTGEGI 134 (143)
T ss_pred EEecCCCCCccCCch---hh------cccCCCEEEEEECccCccchhhHHHHHHHHHHcCC---C--CeEEEECCCCcCH
Confidence 9999997643 2211 11 12268999999999998 44455555555543222 2 3599999999999
Q ss_pred HHHHHHHH
Q psy1315 175 HEGINELY 182 (202)
Q Consensus 175 ~~l~~~l~ 182 (202)
++|.++|.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99999874
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=126.10 Aligned_cols=113 Identities=22% Similarity=0.235 Sum_probs=79.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCc------------------cccccceeeE--eeccc--ccccceEEEEEEcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNT------------------VPTIGFNCEK--VKGQI--GKCKGINFLIWDVGGQ 78 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~------------------~~~~~~~~~~--~~~~~--~~~~~~~~~~~D~~G~ 78 (202)
+|+++|+.|+|||||+++|+....... ....+.+... ..+.. .++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987543211 0111222221 11111 0244688999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
.++......++..+|++|+|+|+.+..+... ..++...... +.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~----~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE----GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc----CCCEEEEEECcccC
Confidence 9998888899999999999999987655533 2333333322 58999999999985
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=135.33 Aligned_cols=164 Identities=17% Similarity=0.200 Sum_probs=106.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC------------C---CccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY------------L---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
..+++++|+++|+.++|||||+++|++... . +.....|.|.......+ ..+...+.++||||++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~-~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEY-ETEKRHYAHVDCPGHA 86 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEe-cCCCcEEEEEECCCHH
Confidence 467899999999999999999999986311 0 11123355555544433 3455678999999998
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCHH-----HHHHHhCch
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQIK-----QIEKLLGLY 153 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~-----~~~~~~~~~ 153 (202)
+|.......+..+|++++|+|+++... ......+..+... ++| +|+|+||+|+.+..... ++...+...
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~----g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV----GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc----CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 887777777788999999999985321 2222233333222 677 67889999997432211 223332211
Q ss_pred hhcCcceEEEEEeeeecCC--------CHHHHHHHHHHHH
Q psy1315 154 ELNNMHLYYIQATCAITGD--------GLHEGINELYQLI 185 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~~--------~v~~l~~~l~~~~ 185 (202)
.+ .....+++++||.++. ++.++++.+.+.+
T Consensus 162 ~~-~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 162 DF-PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CC-CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 11 1234789999999983 4666666666554
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=134.75 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=107.0
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcC-------CC-----C---CccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFD-------QY-----L---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~-------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
..+.++.++|+++|++++|||||+++|++. .+ . ......|.|.......+ ..+...+.++||||
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~-~~~~~~i~~iDtPG 84 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY-ETANRHYAHVDCPG 84 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE-cCCCcEEEEEECCC
Confidence 345678999999999999999999999862 10 0 11123355555444433 34556789999999
Q ss_pred CCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEE-EEeeCCCCCCCcC-HH----HHHHHhC
Q psy1315 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL-ILANKQDLPNAIQ-IK----QIEKLLG 151 (202)
Q Consensus 78 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~~-~~----~~~~~~~ 151 (202)
+++|.......+..+|++++|+|+.+.. .......+..+... ++|.+ +++||+|+.+... .. ++...+.
T Consensus 85 h~~f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~~----gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 85 HADYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHHc----CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 9888777777788899999999998632 12222333333222 67855 5799999974322 11 2222222
Q ss_pred chhhcCcceEEEEEeeeecCC----------CHHHHHHHHHHHH
Q psy1315 152 LYELNNMHLYYIQATCAITGD----------GLHEGINELYQLI 185 (202)
Q Consensus 152 ~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~ 185 (202)
...+ ...+++++++||.++. ++.++++.|...+
T Consensus 160 ~~~~-~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 160 KYDF-PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HcCC-CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 1111 1135899999999985 5677777766554
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=134.83 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=102.4
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC---------------CccccccceeeEeecccccccceEEEEEEcC
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL---------------NTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 76 (202)
.....+..++|+++|++++|||||+++|++.... ......|.+.......+ ..+...+.++|||
T Consensus 5 ~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-~~~~~~~~~iDtP 83 (409)
T CHL00071 5 KFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY-ETENRHYAHVDCP 83 (409)
T ss_pred hccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE-ccCCeEEEEEECC
Confidence 4455778999999999999999999999864211 11122355555433333 3455678899999
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCH-----HHHHHHh
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQI-----KQIEKLL 150 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~-----~~~~~~~ 150 (202)
|+..|.......+..+|++++|+|+.+.-. ......+..+... +.| +|+++||+|+.+.... .++..++
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~----g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l 158 (409)
T CHL00071 84 GHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV----GVPNIVVFLNKEDQVDDEELLELVELEVRELL 158 (409)
T ss_pred ChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 998887777788889999999999985321 2222233333222 678 7789999999763221 1233333
Q ss_pred CchhhcCcceEEEEEeeeecCCCH
Q psy1315 151 GLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
....+ .....+++++||.+|.|+
T Consensus 159 ~~~~~-~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 159 SKYDF-PGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHhCC-CCCcceEEEcchhhcccc
Confidence 22111 123589999999998753
|
|
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=116.16 Aligned_cols=173 Identities=32% Similarity=0.455 Sum_probs=135.4
Q ss_pred HHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhH
Q psy1315 6 AAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLW 85 (202)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 85 (202)
+..++.+- -+++.=|++++|-.++|||||++.|..++.....||.-.|.....+ ...+|+-.|.+|+......|
T Consensus 8 ~~VLq~Lg-L~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~I-----g~m~ftt~DLGGH~qArr~w 81 (193)
T KOG0077|consen 8 SSVLQFLG-LYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSI-----GGMTFTTFDLGGHLQARRVW 81 (193)
T ss_pred HHHHHHHH-HhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhee-----cCceEEEEccccHHHHHHHH
Confidence 33333333 4677889999999999999999999988876666666555555544 56789999999999899999
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC--------
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN-------- 157 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-------- 157 (202)
..|+..+|++++.+|+.+.+.|...+..+..+..-....+.|+++.+||+|.+......+.+..+.+...+.
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~ 161 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLT 161 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhccccccccc
Confidence 999999999999999999999999888877776655566899999999999988776666555444333322
Q ss_pred ---cceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 158 ---MHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 158 ---~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.....+|.||...+.|.-+.|.|+.+.
T Consensus 162 ~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 162 DSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 234568899999999988888877653
|
|
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=125.55 Aligned_cols=171 Identities=12% Similarity=0.171 Sum_probs=112.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC------------ch
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK------------LR 82 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~------------~~ 82 (202)
...+.++|+|+|.|++|||||.|.+++.+....+...-+|...+.... ......+.|+||||.-. +.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~-ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGII-TSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEE-ecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 456899999999999999999999999998877766666666666655 45667899999999221 11
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-----------------HHH
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-----------------IKQ 145 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-----------------~~~ 145 (202)
..-...++++|++++++|+++......- ..+..+.. -...|-++|.||.|...... .-+
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p--~vl~~l~~--ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHP--RVLHMLEE--YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccCh--HHHHHHHH--HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 1233446779999999999863222211 11111221 12678999999999764210 111
Q ss_pred HHHHhCchh----hcCcc----eEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 146 IEKLLGLYE----LNNMH----LYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 146 ~~~~~~~~~----~~~~~----~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
++..+.... +...+ -..+|.+||++|+|++++-++|..+......
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW 275 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPW 275 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCC
Confidence 222211100 01112 2348999999999999999999987754433
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-18 Score=124.66 Aligned_cols=169 Identities=19% Similarity=0.170 Sum_probs=119.6
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC------Cc
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE------KL 81 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~------~~ 81 (202)
.+++++.-.....+|+|.|.||||||||++.+.+.+. ......+|+..+.+.+-..+...++++||||.- +.
T Consensus 157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN 234 (346)
T COG1084 157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN 234 (346)
T ss_pred HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhc
Confidence 4567777777899999999999999999999998763 333345667777776646667799999999921 11
Q ss_pred h--hhHHhhhcC-CCEEEEEEeCCCchh--HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc
Q psy1315 82 R--PLWKSYTRC-TDGIIFVIDSTDVER--MEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN 156 (202)
Q Consensus 82 ~--~~~~~~~~~-~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 156 (202)
. .+....+++ .++++|+||.+..+. .+.....+..+.... +.|+++|.||+|..+.....++...+.
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~----- 306 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVL----- 306 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHH-----
Confidence 1 111222222 689999999987654 455555566665543 589999999999987766666665432
Q ss_pred CcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 157 NMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 157 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
...+.....+++..+.+++.+-+.+.....
T Consensus 307 ~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 307 EEGGEEPLKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred hhccccccceeeeehhhHHHHHHHHHHHhh
Confidence 223344567889999999988888777643
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=139.13 Aligned_cols=157 Identities=24% Similarity=0.306 Sum_probs=111.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc------hhhHHhhh--
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL------RPLWKSYT-- 89 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~-- 89 (202)
+..+|+++|+||||||||+|++++.... ...=+|+|....+... ......++++|.||...+ +.....++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~-~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKL-KYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEE-EecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 3567999999999999999999987542 2333467777766655 456667999999994322 22333443
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
.++|++|.|+|++|.+....+.-++.++ +.|++++.|++|........--.+ .+.+.-++|++++||+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~~-----~L~~~LGvPVv~tvA~ 147 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLEL-------GIPMILALNMIDEAKKRGIRIDIE-----KLSKLLGVPVVPTVAK 147 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHHc-------CCCeEEEeccHhhHHhcCCcccHH-----HHHHHhCCCEEEEEee
Confidence 3479999999999876665555444443 789999999999865432221111 1223458899999999
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILKK 188 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~ 188 (202)
+|.|++++.+.+.+.....
T Consensus 148 ~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 148 RGEGLEELKRAIIELAESK 166 (653)
T ss_pred cCCCHHHHHHHHHHhcccc
Confidence 9999999999998755433
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-18 Score=132.10 Aligned_cols=152 Identities=17% Similarity=0.189 Sum_probs=97.7
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCC------------C---CccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQY------------L---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++.++|+++|+.++|||||+++|++... . ......|.|.......+ ......+.+|||||+
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~-~~~~~~~~liDtpGh 85 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEY-ETENRHYAHVDCPGH 85 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEE-cCCCEEEEEEECCch
Confidence 3467899999999999999999999974310 0 11112345555444444 345678999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEE-EEeeCCCCCCCcCH-----HHHHHHhCc
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL-ILANKQDLPNAIQI-----KQIEKLLGL 152 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~~~-----~~~~~~~~~ 152 (202)
++|..........+|++++|+|+.+.-. ......+..+... +.|.+ +|+||+|+.+.... .++...+..
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 9887777777788999999999986321 1222233333222 56655 68999999753221 123333322
Q ss_pred hhhcCcceEEEEEeeeecCC
Q psy1315 153 YELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 153 ~~~~~~~~~~~~~~Sa~~~~ 172 (202)
..+ ...+++++++||.++.
T Consensus 161 ~~~-~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 161 YDF-PGDDTPIIRGSALKAL 179 (394)
T ss_pred cCC-CccCccEEECcccccc
Confidence 211 1124899999999875
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-18 Score=120.70 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=99.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-cccccc---ceeeEeecccccccceEEEEEEcCCCCCchhhHHh-----hh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIG---FNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS-----YT 89 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~-----~~ 89 (202)
+++|+++|.+|+|||||+|++++..... ...+.+ ++.....+.. .....+.+||+||.......... .+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH--PKFPNVTLWDLPGIGSTAFPPDDYLEEMKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec--CCCCCceEEeCCCCCcccCCHHHHHHHhCc
Confidence 4789999999999999999999865432 222222 1222112211 12346899999996543222222 25
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC---------HHHHHHHhCch---hhc-
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ---------IKQIEKLLGLY---ELN- 156 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~---------~~~~~~~~~~~---~~~- 156 (202)
..+|+++++.+ .++.....++...+... +.|+++|+||+|+..... .......+... .+.
T Consensus 79 ~~~d~~l~v~~----~~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 79 SEYDFFIIISS----TRFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred cCcCEEEEEeC----CCCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 67899888743 23444444444444432 689999999999843211 11211111111 110
Q ss_pred -CcceEEEEEeeee--cCCCHHHHHHHHHHHHHHHHhh
Q psy1315 157 -NMHLYYIQATCAI--TGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 157 -~~~~~~~~~~Sa~--~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
.....++|.+|+. .+.|+..+.+.+.+.+.++++.
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 1234578999998 6799999999999999876653
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=133.89 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=82.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-----C----------------ccccccceeeEeecccccccceEEEEE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-----N----------------TVPTIGFNCEKVKGQIGKCKGINFLIW 73 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-----~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (202)
...+..+|+++|++++|||||+++|+..... . .....|.+.......+ ..+.+.+++|
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~-~~~~~~inli 84 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQF-PYRDCLINLL 84 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEE-EECCEEEEEE
Confidence 3456789999999999999999999742110 0 0001122222222222 4567889999
Q ss_pred EcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 74 D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
||||+..+......+++.+|++|+|+|+.+.-.. ....++..... .++|+++++||+|+...
T Consensus 85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~----~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL----RDTPIFTFINKLDRDGR 146 (526)
T ss_pred ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh----cCCCEEEEEECCccccc
Confidence 9999999888778888999999999999864221 22333333322 37999999999998653
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=120.38 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh-----hHHhhhcCCCEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP-----LWKSYTRCTDGI 95 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----~~~~~~~~~d~~ 95 (202)
||+++|+.+|||||+.+.++.+..+......+.|...-...+.......+++||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999998876655455554444333333235677999999999865433 467788999999
Q ss_pred EEEEeCCCchh---HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc----hhhc-CcceEEEEEee
Q psy1315 96 IFVIDSTDVER---MEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL----YELN-NMHLYYIQATC 167 (202)
Q Consensus 96 ilv~d~~~~~s---~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~S 167 (202)
|+|+|+.+.+- +......+..+... .++..+-|..+|+|+..+....+....... .... ....+.++.||
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999984332 33333444444443 558899999999999765444333222111 1110 11248899999
Q ss_pred eecCCCHHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~ 189 (202)
... +.+-+.|..|++.+..+.
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTH
T ss_pred CcC-cHHHHHHHHHHHHHcccH
Confidence 877 579999999998776443
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=117.92 Aligned_cols=129 Identities=29% Similarity=0.422 Sum_probs=78.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHh---hhcCCCE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS---YTRCTDG 94 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~---~~~~~d~ 94 (202)
+.-.|+++|++|+|||+|+.+|.++....+..+...+. ...+ .......+.++|+||+++.+..... +..++.+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~--~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNV--NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCG--SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEe--ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 45689999999999999999999987655544442222 2222 1344557899999999998875544 4888999
Q ss_pred EEEEEeCCC-chhHHHHHHHHHHHHccC--CCCCCcEEEEeeCCCCCCCcCHHHHHHH
Q psy1315 95 IIFVIDSTD-VERMEEVKIELIKTIKNN--DNFNVPILILANKQDLPNAIQIKQIEKL 149 (202)
Q Consensus 95 ~ilv~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~~~~~~~~~ 149 (202)
+|||+|.+. +..+.....++-.++... .....|++|++||.|+........++..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~ 136 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKL 136 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHH
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHH
Confidence 999999873 344555554444433321 2458999999999999876655554443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9e-18 Score=134.02 Aligned_cols=159 Identities=17% Similarity=0.111 Sum_probs=99.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc--------------cc------------------cccceeeEeeccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT--------------VP------------------TIGFNCEKVKGQI 62 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~--------------~~------------------~~~~~~~~~~~~~ 62 (202)
..+..++|+++|++++|||||+.+|+....... .. ..|.+.+......
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 457889999999999999999999976532111 00 0123333322222
Q ss_pred ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 63 GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 63 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
..+...+.++||||++.|.......+..+|++++|+|+...-.-. ....+. +..... ..|+||++||+|+.+...
T Consensus 103 -~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~-l~~~lg--~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 103 -STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSF-IATLLG--IKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred -ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHH-HHHHhC--CCceEEEEEeeccccchh
Confidence 345668999999999888766666779999999999997532111 111111 111111 357899999999975322
Q ss_pred --HHHHHHHhCc--hhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 143 --IKQIEKLLGL--YELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 143 --~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
...+...+.. ..+......+++++||++|+|++++-
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 2222222211 01110235789999999999998753
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=132.18 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=103.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeeccccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGK 64 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 64 (202)
..+++++|+++|+.++|||||+.+|+..... +.....|.+.......+ .
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~-~ 81 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF-E 81 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe-c
Confidence 3567899999999999999999998742210 00111234444433333 4
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHH-------HHHHHHHHHHccCCCCCC-cEEEEeeCCC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERME-------EVKIELIKTIKNNDNFNV-PILILANKQD 136 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-pvivv~nK~D 136 (202)
.....+.++|+||+++|.......+..+|++|+|+|+++. .|+ .....+...... ++ ++||++||+|
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~----gi~~iIV~vNKmD 156 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL----GVKQMICCCNKMD 156 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc----CCCcEEEEEEccc
Confidence 5677899999999999999999999999999999999862 232 333333332222 56 5788999999
Q ss_pred CCCCcC--------HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 137 LPNAIQ--------IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 137 l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+..... ..++..+++...+ ...+++++++||.+|+|+.+
T Consensus 157 ~~~~~~~~~~~~~i~~ei~~~l~~~g~-~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 157 ATTPKYSKARYDEIVKEVSSYLKKVGY-NPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHcCC-CcccceEEEEeccccccccc
Confidence 863211 2233343332222 12357899999999999854
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-17 Score=120.75 Aligned_cols=113 Identities=18% Similarity=0.166 Sum_probs=76.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCC-----c--ccc----------ccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLN-----T--VPT----------IGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~-----~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
+|+++|++|+|||||++++++..... . ..+ .+.+........ ....+.+.+|||||+.++..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~-~~~~~~i~liDtPG~~~f~~ 79 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPL-EWKGHKINLIDTPGYADFVG 79 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEE-EECCEEEEEEECcCHHHHHH
Confidence 58999999999999999997542210 0 000 011111111111 34567899999999988888
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.+..+++.+|++++|+|+++....... ..+..... .+.|.++++||+|+..
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~----~~~p~iivvNK~D~~~ 130 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE----AGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCccCC
Confidence 888899999999999999875444322 22333322 2789999999999764
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-17 Score=129.71 Aligned_cols=152 Identities=19% Similarity=0.209 Sum_probs=100.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC---------------CCccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY---------------LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
..++.++|+++|++++|||||+++|++... .......|.+.+.....+ ..+...+.++|+||++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~-~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEY-ETENRHYAHVDCPGHA 155 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEE-ecCCcEEEEEECCCHH
Confidence 467899999999999999999999985211 011222345544433333 3456688999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcC-HH----HHHHHhCch
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQ-IK----QIEKLLGLY 153 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~----~~~~~~~~~ 153 (202)
.|.......+..+|++++|+|+.+... .....++...... ++| +||++||+|+.+... .+ ++...+...
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV----GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY 230 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence 988888888889999999999985422 2223333333332 677 788999999975322 11 222332211
Q ss_pred hhcCcceEEEEEeeeecCCC
Q psy1315 154 ELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~~~ 173 (202)
.+ ...+.+++++|+.++.+
T Consensus 231 g~-~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 231 EF-PGDDIPIISGSALLALE 249 (478)
T ss_pred CC-CcCcceEEEEEcccccc
Confidence 11 12468999999998854
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=131.06 Aligned_cols=156 Identities=18% Similarity=0.176 Sum_probs=102.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeeccccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGK 64 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 64 (202)
..+++++|+++|+.++|||||+.+|+..... ......|.+.+.....+ .
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~-~ 81 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF-E 81 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE-c
Confidence 3567899999999999999999999762110 00111234444433333 4
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch---hH---HHHHHHHHHHHccCCCCCCc-EEEEeeCCCC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE---RM---EEVKIELIKTIKNNDNFNVP-ILILANKQDL 137 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl 137 (202)
.+...+.++|+||+.+|.......+..+|++|+|+|+.+.. .+ ......+...... ++| +||++||+|.
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~----gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL----GVKQMIVCINKMDD 157 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc----CCCeEEEEEEcccc
Confidence 56778999999999999888888899999999999998542 11 1233333333222 555 6789999995
Q ss_pred CCC----cCH----HHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 138 PNA----IQI----KQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 138 ~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
... ... .++...+....+ ...+++++++|+.+|+|+.+
T Consensus 158 ~~~~~~~~~~~~i~~~i~~~l~~~g~-~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 158 KTVNYSQERYDEIKKEVSAYLKKVGY-NPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhcCC-CcccceEEEeecccCCCccc
Confidence 321 112 223333321111 12368999999999999864
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-17 Score=117.63 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=78.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCc---------------cccccceee----Eeecccc-----cccceEEEEEEcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNT---------------VPTIGFNCE----KVKGQIG-----KCKGINFLIWDVG 76 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~---------------~~~~~~~~~----~~~~~~~-----~~~~~~~~~~D~~ 76 (202)
+|+++|+.++|||||+.+|+....... ....|.+.. ...+... ++..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999975431100 001122211 1222110 2347889999999
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
|++.|......+++.+|++++|+|+.+...... ...+...... +.|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~~----~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALKE----RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHHc----CCCEEEEEECCCcc
Confidence 999999999999999999999999987654443 2233333322 68999999999985
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=130.51 Aligned_cols=151 Identities=16% Similarity=0.118 Sum_probs=94.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCc--------------c------------------ccccceeeEeecccccccc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNT--------------V------------------PTIGFNCEKVKGQIGKCKG 67 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~--------------~------------------~~~~~~~~~~~~~~~~~~~ 67 (202)
++|+++|+.++|||||+.+|+....... . ...|.+.+...... ..+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~-~~~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF-STDK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE-ccCC
Confidence 5899999999999999999975432100 0 01123333322222 3456
Q ss_pred eEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHH
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQ 145 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~ 145 (202)
..+.++||||++.|.......+..+|++|+|+|+...-.- .....+. +.... ...+++|++||+|+.+... ...
T Consensus 80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSY-IASLL--GIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHH-HHHHc--CCCcEEEEEEecccccchHHHHHH
Confidence 6899999999998877777788899999999999754221 1111222 22211 1346899999999975321 111
Q ss_pred HHHHhCc--hhhcCcceEEEEEeeeecCCCHHH
Q psy1315 146 IEKLLGL--YELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 146 ~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+...+.. ..+ ...+.+++++||.+|+|+++
T Consensus 156 i~~~~~~~~~~~-~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQL-GFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHc-CCCCccEEEeecccCCCCcc
Confidence 2221110 011 12356899999999999986
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=127.83 Aligned_cols=171 Identities=18% Similarity=0.191 Sum_probs=120.4
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-c--------hhh
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-L--------RPL 84 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~--------~~~ 84 (202)
...+..++|+++|.||+|||||+|.|.+.....++|..|+|.+.+...+ +.+.+.+.+.||+|..+ - -..
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v-~~~G~~v~L~DTAGiRe~~~~~iE~~gI~r 341 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQV-TVNGVPVRLSDTAGIREESNDGIEALGIER 341 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEe-ecCCeEEEEEeccccccccCChhHHHhHHH
Confidence 3466789999999999999999999999999999999999999999988 68899999999999433 0 012
Q ss_pred HHhhhcCCCEEEEEEeC--CCchhHHHHHHHHHHHHccC-----CCCCCcEEEEeeCCCCCCCcCHHHH--HHHhCchhh
Q psy1315 85 WKSYTRCTDGIIFVIDS--TDVERMEEVKIELIKTIKNN-----DNFNVPILILANKQDLPNAIQIKQI--EKLLGLYEL 155 (202)
Q Consensus 85 ~~~~~~~~d~~ilv~d~--~~~~s~~~~~~~~~~~~~~~-----~~~~~pvivv~nK~Dl~~~~~~~~~--~~~~~~~~~ 155 (202)
...-++.+|++++|+|+ +..++-..+.+.+.....-. .....|++++.||.|+......-.. ..+.. ..
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~--~~ 419 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPS--AE 419 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccc--cc
Confidence 33446779999999999 33333333333443332211 1225799999999999765221111 11111 00
Q ss_pred cCcceEE-EEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 156 NNMHLYY-IQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 156 ~~~~~~~-~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
.....+ ..++|+++++|++.+...+...+...
T Consensus 420 -~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 420 -GRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred -cCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 112333 55699999999999999998877654
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=120.82 Aligned_cols=158 Identities=20% Similarity=0.268 Sum_probs=113.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC---CccccccceeeEeecccccccceEEEEEEcCCCC---------Cch
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE---------KLR 82 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~ 82 (202)
..+....|+++|-.++|||||+|++.+.... .-..|...+...+.+ .+...+.+.||.|.- .|.
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l----~~g~~vlLtDTVGFI~~LP~~LV~AFk 263 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIEL----GDGRKVLLTDTVGFIRDLPHPLVEAFK 263 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEe----CCCceEEEecCccCcccCChHHHHHHH
Confidence 3567899999999999999999999976542 335666777777776 335678899999932 233
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcCcceE
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 161 (202)
+.... ...+|++++|+|++++.....+.. ...++........|+|+|.||+|+..... ...+.. ..+
T Consensus 264 sTLEE-~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~---------~~~- 331 (411)
T COG2262 264 STLEE-VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEEILAELER---------GSP- 331 (411)
T ss_pred HHHHH-hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhh---------cCC-
Confidence 33333 456999999999999865555443 33333333445799999999999876543 111111 112
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
..+++||++++|++.+.+.|.+.+...
T Consensus 332 ~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 332 NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 578999999999999999999988744
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-17 Score=135.83 Aligned_cols=118 Identities=21% Similarity=0.167 Sum_probs=83.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--------------Cc---cccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--------------NT---VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
++..+|+++|+.|+|||||+++|+..... +. ....+.+........ ......+++|||||+.
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~-~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSC-DWDNHRINLIDTPGHI 84 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEE-EECCEEEEEEECCCcH
Confidence 45789999999999999999999853210 00 001122222211112 3457789999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
++...+..+++.+|++|+|+|+++........ .+...... ++|+++|+||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~~~~~----~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VWRQADRY----GIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHhc----CCCEEEEEECCCCCCC
Confidence 99999999999999999999998766555433 33333222 7899999999998764
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=126.58 Aligned_cols=164 Identities=17% Similarity=0.204 Sum_probs=103.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcC------CCC---------CccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFD------QYL---------NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
..+++++|+++|+.++|||||+++|.+. ... +.....|.|.......+ ..+...+.++||||+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~-~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY-ETAKRHYAHVDCPGHA 135 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE-cCCCeEEEEEECCCcc
Confidence 4678999999999999999999999632 100 11122355555544444 4456688999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCH-HHHH----HHhCch
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQI-KQIE----KLLGLY 153 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~-~~~~----~~~~~~ 153 (202)
.|.......+..+|++++|+|+.+... ......+..+... +.| +|+++||+|+.+.... +.+. ..+...
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~----gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV----GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc----CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 887777777778999999999975421 2222223333222 678 5788999999753221 1122 222111
Q ss_pred hhcCcceEEEEEeeee---cCCC-------HHHHHHHHHHHH
Q psy1315 154 ELNNMHLYYIQATCAI---TGDG-------LHEGINELYQLI 185 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~---~~~~-------v~~l~~~l~~~~ 185 (202)
.+ ....+|++++|+. ++.| +.++++.+.+.+
T Consensus 211 ~~-~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 211 KF-PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CC-CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 11 1235788888875 4555 667777766654
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-17 Score=126.08 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=105.4
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC---------------CccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL---------------NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++.++|+++|+.++|||||+++|++.... +.....|.|........ ..+...+.++||||+
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~-~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEY-ETEKRHYAHVDCPGH 85 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEE-cCCCeEEEEEECCCH
Confidence 34578999999999999999999999873110 11113345555444433 345567899999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEE-EEeeCCCCCCCcC-HH----HHHHHhCc
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL-ILANKQDLPNAIQ-IK----QIEKLLGL 152 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~~-~~----~~~~~~~~ 152 (202)
.+|.......+..+|++++|+|+.+.-. ......+..+... +.|.+ |++||+|+.+... .. ++...+..
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~----g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~ 160 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc----CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence 8887777777889999999999975322 2222333333322 67876 5899999975322 11 22222221
Q ss_pred hhhcCcceEEEEEeeeecCC----------CHHHHHHHHHHH
Q psy1315 153 YELNNMHLYYIQATCAITGD----------GLHEGINELYQL 184 (202)
Q Consensus 153 ~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~ 184 (202)
..+ ...+.+++++||.++. ++..+++.|...
T Consensus 161 ~~~-~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 161 YDF-PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred cCC-CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 111 1245789999999875 455666665554
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=104.64 Aligned_cols=107 Identities=23% Similarity=0.307 Sum_probs=70.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc---------hhhHHhhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL---------RPLWKSYTRC 91 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~~~ 91 (202)
+|+|+|.+|+|||||+|+|++.......+..+.+........ ......+.++||||...- .......+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~-~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQF-EYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEE-EETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeee-eeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 689999999999999999998655444444454444422211 235566789999995321 1123334488
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK 134 (202)
+|++++|+|.+++.. +.....+..+ + ...|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 999999999876311 2222222333 2 38999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=119.34 Aligned_cols=114 Identities=21% Similarity=0.178 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-----------------CccccccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-----------------NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
+|+++|++|+|||||+++|+..... +.....+.+.......+ ......+.++||||+..+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~-~~~~~~i~liDTPG~~df~~ 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTC-FWKDHRINIIDTPGHVDFTI 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEE-EECCEEEEEEECCCcHHHHH
Confidence 5899999999999999999742110 01112234444333333 34567899999999988888
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.+..+++.+|++|+|+|+.+...-. ....+...... ++|+++++||+|+.+.
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~----~~p~ivviNK~D~~~a 131 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY----NVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc----CCCEEEEEECCCCCCC
Confidence 8999999999999999997643222 22333333332 7899999999998754
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=8e-17 Score=118.15 Aligned_cols=151 Identities=26% Similarity=0.304 Sum_probs=104.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCC-------CCccccccceeeEeecccccccceEEEEEEcCCCC-------Cchh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQY-------LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-------KLRP 83 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-------~~~~ 83 (202)
..-.+.+||-|++|||||++++.+.+. ....|.+| .+.+ .+...+.+-|.||.- .+..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG----~v~y----ddf~q~tVADiPGiI~GAh~nkGlG~ 266 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG----TVNY----DDFSQITVADIPGIIEGAHMNKGLGY 266 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc----eeec----cccceeEeccCccccccccccCcccH
Confidence 445688999999999999999998753 11234333 2222 233448899999932 3344
Q ss_pred hHHhhhcCCCEEEEEEeCCCc---hhHHHHHHHHHHHHcc-CCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcC
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDV---ERMEEVKIELIKTIKN-NDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNN 157 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~ 157 (202)
.....+++++.+++|+|++.+ +.++.+...+.++..+ ....+.|.++|+||+|+.+.... +++...+
T Consensus 267 ~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~l------- 339 (366)
T KOG1489|consen 267 KFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRL------- 339 (366)
T ss_pred HHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHc-------
Confidence 556677889999999999987 6666666555544332 24558999999999998643221 3333322
Q ss_pred cceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 158 MHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.+..++++||++++|+.++++-+.+.
T Consensus 340 -q~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 340 -QNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred -CCCcEEEeeeccccchHHHHHHHhhc
Confidence 22358999999999999999877553
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=124.28 Aligned_cols=165 Identities=21% Similarity=0.147 Sum_probs=111.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccc--cceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKC--KGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
+.+=|+++|+...|||||+..+........... |.|-..--+.+... ....+.|.||||++.|..+...-.+-+|++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaG-GITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAG-GITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCC-ceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 456799999999999999999987665322111 22222222211111 345799999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc--CcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN--NMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~ 173 (202)
|||+++++.- ......-+...... +.|++|..||+|.++........+........ -.....++++||++|+|
T Consensus 83 ILVVa~dDGv-~pQTiEAI~hak~a----~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 83 ILVVAADDGV-MPQTIEAINHAKAA----GVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEEccCCc-chhHHHHHHHHHHC----CCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999999631 12222233333333 89999999999998653332222211111111 12347899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKK 188 (202)
Q Consensus 174 v~~l~~~l~~~~~~~ 188 (202)
+++|++.+.-+...+
T Consensus 158 i~eLL~~ill~aev~ 172 (509)
T COG0532 158 IDELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988776655
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=128.27 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=82.6
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCC-CC--------------------ccccccceeeEeecccccccceEEE
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LN--------------------TVPTIGFNCEKVKGQIGKCKGINFL 71 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (202)
.....+..+|+++|++++|||||+++|+.... .. .....|.+.......+ ....+.+.
T Consensus 5 ~~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~-~~~~~~in 83 (527)
T TIGR00503 5 LKEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF-PYRDCLVN 83 (527)
T ss_pred hhhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE-eeCCeEEE
Confidence 34556788999999999999999999864211 00 0011133333322222 45678999
Q ss_pred EEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 72 ~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
+|||||+..+......+++.+|++|+|+|+.+. +......+...... .+.|+++++||+|+..
T Consensus 84 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 84 LLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEECCChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 999999988888777788999999999999853 22222222233322 3789999999999853
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=123.75 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=117.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--------------CccccccceeeEeeccc--ccccceEEEEEEcCCCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--------------NTVPTIGFNCEKVKGQI--GKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~~ 80 (202)
++--++.++.+...|||||..+|+..... +.....|.|....+..+ .++..+.++++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 56678999999999999999999753221 11223355554433322 235568999999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
|.......+..++++|+|+|+...-.-+...+.+..... +..+|.|+||+|++.........+... ....+.
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~adpe~V~~q~~~---lF~~~~ 209 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSADPERVENQLFE---LFDIPP 209 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCCCHHHHHHHHHH---HhcCCc
Confidence 998888888899999999999854433444444444433 688999999999988755443333222 224466
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.+++.+||++|.|+.++++.|++.+.
T Consensus 210 ~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 210 AEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred cceEEEEeccCccHHHHHHHHHhhCC
Confidence 68999999999999999999998764
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-16 Score=115.54 Aligned_cols=158 Identities=22% Similarity=0.257 Sum_probs=105.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSY 88 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~ 88 (202)
.+..-.++++|.|++|||||++.|.+.... ...-.-+|...+...+ .++...++++|+||.-. ......+.
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l-~Y~ga~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGML-EYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceE-eecCceEEEEcCcccccCcccCCCCcceeeee
Confidence 345678999999999999999999987531 1111123334444434 78889999999998321 22456677
Q ss_pred hcCCCEEEEEEeCCCchh-HHHHHHHH----------------------------------------HHHHccCC-----
Q psy1315 89 TRCTDGIIFVIDSTDVER-MEEVKIEL----------------------------------------IKTIKNND----- 122 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~~----- 122 (202)
+++||++++|+|+....+ .+-+.+.+ ..+++.+.
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~ 217 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD 217 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence 899999999999986433 22211111 01111000
Q ss_pred -------------------CCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 123 -------------------NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 123 -------------------~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
..=+|.++|.||.|+.+......+... ...+++||..+.|++++.+.|.+
T Consensus 218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~-----------~~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK-----------PNSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc-----------cceEEEecccCCCHHHHHHHHHH
Confidence 012699999999999874333333321 16789999999999999999998
Q ss_pred HHH
Q psy1315 184 LIL 186 (202)
Q Consensus 184 ~~~ 186 (202)
.+.
T Consensus 287 ~L~ 289 (365)
T COG1163 287 VLG 289 (365)
T ss_pred hhC
Confidence 773
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=132.22 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=96.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccc----------c----------------------ccceeeEeeccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVP----------T----------------------IGFNCEKVKGQI 62 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~----------~----------------------~~~~~~~~~~~~ 62 (202)
..++.++|+++|++++|||||+++|++........ . .|.|.+......
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 56678999999999999999999998654321100 0 122222222222
Q ss_pred ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 63 GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 63 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
......+.++||||++.+.......+..+|++++|+|+.+...-. ....+...... ...|++||+||+|+.+...
T Consensus 100 -~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 100 -ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL---GIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred -ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh---CCCeEEEEEEecccccchh
Confidence 344567899999999887766667788999999999997532111 11111111111 1357889999999975221
Q ss_pred --HHHHHHHhCc--hhhcCcceEEEEEeeeecCCCHHH
Q psy1315 143 --IKQIEKLLGL--YELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 143 --~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
...+...+.. ..+ .....+++++||++|.|+++
T Consensus 175 ~~~~~i~~~i~~~~~~~-~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKL-GLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHc-CCCCccEEEEecccCCCccc
Confidence 1222222210 011 12346799999999999874
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-17 Score=122.14 Aligned_cols=159 Identities=21% Similarity=0.216 Sum_probs=107.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeeccccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGK 64 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 64 (202)
..+.+++++|+|+..+|||||+-+|++.... ...+..|.|.......+ .
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f-e 81 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF-E 81 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe-e
Confidence 3568999999999999999999999765311 01122356666655555 5
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchh-----HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVER-----MEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s-----~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.+.+.++++|+||+..|-..+......+|+.|+|+|+.+.+. .....+....+.+. ..-..+||++||+|+.+
T Consensus 82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t--lGi~~lIVavNKMD~v~ 159 (428)
T COG5256 82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART--LGIKQLIVAVNKMDLVS 159 (428)
T ss_pred cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh--cCCceEEEEEEcccccc
Confidence 677889999999998888888888888999999999987531 11122222222222 22457889999999987
Q ss_pred CcC--HHH----HHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 140 AIQ--IKQ----IEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 140 ~~~--~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
-.+ .++ +...++...+ ...+++|+++|+.+|.|+.+.
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~-~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGY-NPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCC-CccCCeEEecccccCCccccc
Confidence 322 112 2222211111 223688999999999997653
|
|
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-16 Score=107.94 Aligned_cols=163 Identities=23% Similarity=0.281 Sum_probs=110.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhc---CC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTR---CT 92 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~ 92 (202)
.++.-.|.++|..+||||+|+-+|..+.+..+.++...+.-...+ ......++|.||+++.+.....++. .+
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~-----gs~~~~LVD~PGH~rlR~kl~e~~~~~~~a 109 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRL-----GSENVTLVDLPGHSRLRRKLLEYLKHNYSA 109 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEee-----cCcceEEEeCCCcHHHHHHHHHHccccccc
Confidence 334478999999999999999999988766555554444444433 2223789999999999887777777 68
Q ss_pred CEEEEEEeCC-CchhHHHHHHHHHHHHccC--CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc--------h--------
Q psy1315 93 DGIIFVIDST-DVERMEEVKIELIKTIKNN--DNFNVPILILANKQDLPNAIQIKQIEKLLGL--------Y-------- 153 (202)
Q Consensus 93 d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~--------~-------- 153 (202)
-++|+|+|.. .+.....+..++-.++... .....|+++++||.|+.-....+.+++.++. .
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ 189 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD 189 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 9999999974 2333444443333333322 3458899999999999665443333222110 0
Q ss_pred ----------------hh--cCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 154 ----------------EL--NNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 154 ----------------~~--~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.+ .....+.|.++|++++ +++++-+|+.+.
T Consensus 190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 00 0124577999999988 899999998764
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=124.05 Aligned_cols=169 Identities=15% Similarity=0.082 Sum_probs=106.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC---CCc---cc--cccceeeEe-------------ecccc----------
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY---LNT---VP--TIGFNCEKV-------------KGQIG---------- 63 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~---~~~---~~--~~~~~~~~~-------------~~~~~---------- 63 (202)
..+..++|+++|+..+|||||+.+|.+... .+. .- ..|+..... .++..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 346789999999999999999999987432 111 11 122221100 00000
Q ss_pred ---cccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 64 ---KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 64 ---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
......+.++|+||++.|.......+..+|++++|+|+++..........+. +... ..-.|+|||+||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~--lgi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEI--MKLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHH--cCCCcEEEEEecccccCH
Confidence 0002468999999999988888888889999999999986321222222322 2221 113478999999999764
Q ss_pred cCHHHHHHHhCchh-hcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 141 IQIKQIEKLLGLYE-LNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 141 ~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
....+....+.... -......+++++||++|.|+++|++.|.+.+.
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 33322222221100 00124679999999999999999999886553
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.2e-16 Score=128.06 Aligned_cols=118 Identities=20% Similarity=0.157 Sum_probs=83.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-----Ccc------------ccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-----NTV------------PTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
..+-.+|+++|++++|||||+++|++.... ... ...|++.......+ ......+.+|||||+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~-~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTV-FWKGHRINIIDTPGH 85 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEE-EECCeEEEEEECCCC
Confidence 445679999999999999999999743211 010 11244444333333 446788999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.++......+++.+|++|+|+|+.+....... ..+...... +.|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~----~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY----EVPRIAFVNKMDKTG 141 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc----CCCEEEEEECCCCCC
Confidence 98888888999999999999999865444322 233333322 689999999999875
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=119.65 Aligned_cols=164 Identities=21% Similarity=0.164 Sum_probs=116.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCcc---ccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV---PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
.+++.=|.++|+...|||||+..|.+....... -|..+--..+++ + +.-.++|.||||+..|..+...-..-+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~--p--~G~~iTFLDTPGHaAF~aMRaRGA~vt 225 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTL--P--SGKSITFLDTPGHAAFSAMRARGANVT 225 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEec--C--CCCEEEEecCCcHHHHHHHHhccCccc
Confidence 346778999999999999999999887654221 111122223333 2 346789999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC--cceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN--MHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~ 170 (202)
|++|+|+.++|.- +.....-+.... ..+.|+||.+||+|.++.......++.+......+ ..+.+++++||++
T Consensus 226 DIvVLVVAadDGV-mpQT~EaIkhAk----~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 226 DIVVLVVAADDGV-MPQTLEAIKHAK----SANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred cEEEEEEEccCCc-cHhHHHHHHHHH----hcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 9999999998632 222222233333 33899999999999987655444444433222222 3568899999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLILKK 188 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~ 188 (202)
|.|++.|.+.+.-+..-.
T Consensus 301 g~nl~~L~eaill~Ae~m 318 (683)
T KOG1145|consen 301 GENLDLLEEAILLLAEVM 318 (683)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 999999999887665433
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=112.75 Aligned_cols=174 Identities=18% Similarity=0.236 Sum_probs=111.1
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------ch
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LR 82 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~ 82 (202)
++.+-..+.+++|+++|.+|+|||||+|+|+.....+.... +.+..........++.-.+.+||+||-++ +.
T Consensus 30 ~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~v-g~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r 108 (296)
T COG3596 30 RMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKV-GVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHR 108 (296)
T ss_pred hhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeec-ccCCCchhhHHhhccccceEEecCCCcccchhhhHHHH
Confidence 33344567899999999999999999999997654433221 11111111111123345689999999443 66
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC---------cCHHHHHHHhCc-
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA---------IQIKQIEKLLGL- 152 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~---------~~~~~~~~~~~~- 152 (202)
.....++.+.|.++++.+..++.---. .+.+..+... ..+.|+++++|.+|.... .....++.++..
T Consensus 109 ~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~--~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k 185 (296)
T COG3596 109 QLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIIL--GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK 185 (296)
T ss_pred HHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHh--ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence 778888999999999999986532111 2233344332 225899999999998542 111112222211
Q ss_pred ----hhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 153 ----YELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 153 ----~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
..+ ...--|++..|...++|++++...++..+...
T Consensus 186 ~~~~~~~-~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 186 AEALGRL-FQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHH-HhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 111 12245688888899999999999999988644
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=109.29 Aligned_cols=167 Identities=11% Similarity=0.029 Sum_probs=95.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccc-cccceeeEeecccccccceEEEEEEcCCCCCch-------h----hHHh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVP-TIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-------P----LWKS 87 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~----~~~~ 87 (202)
++|+++|.+|+|||||+|.+++........ ..+.|........ ......+.++||||..... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~-~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESA-VWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeE-EECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 579999999999999999999876542221 2223322222211 2245679999999943321 1 1122
Q ss_pred hhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHh--CchhhcCcceEEEE
Q psy1315 88 YTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL--GLYELNNMHLYYIQ 164 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 164 (202)
...+.|++|+|+++.+.. .......++...... ....++++|.|++|........+..... .+...-..++..++
T Consensus 80 ~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~ 157 (196)
T cd01852 80 SAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV 157 (196)
T ss_pred cCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence 245689999999997621 112222333333221 1135889999999976543322211100 01111123444444
Q ss_pred Eee-----eecCCCHHHHHHHHHHHHHHHH
Q psy1315 165 ATC-----AITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 165 ~~S-----a~~~~~v~~l~~~l~~~~~~~~ 189 (202)
..+ +..+.++.+|++.|.+.+.++.
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 444 4467789999999988887643
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=115.59 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=54.4
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCCC-------CccccccceeeEeecc---------------cccccceEEEEEEcCCC-
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQYL-------NTVPTIGFNCEKVKGQ---------------IGKCKGINFLIWDVGGQ- 78 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~~-------~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~D~~G~- 78 (202)
|+++|.|+||||||++++++.... ...|+.|........+ ......+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999987642 2234444333211100 10124478999999996
Q ss_pred ---CCchhh---HHhhhcCCCEEEEEEeCC
Q psy1315 79 ---EKLRPL---WKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 79 ---~~~~~~---~~~~~~~~d~~ilv~d~~ 102 (202)
++...+ ....++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334443 334589999999999997
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-16 Score=115.31 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=72.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCc-----------cccccceeeEeecccccccceEEEEEEcCCCCCchh---
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNT-----------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP--- 83 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--- 83 (202)
-.++|+++|++|+|||||+|+|++..+... .+|.+.......... ++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccchh
Confidence 368999999999999999999998876432 223333333333322 34557899999999332111
Q ss_pred hHH-----------------------hhhc--CCCEEEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 84 LWK-----------------------SYTR--CTDGIIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 84 ~~~-----------------------~~~~--~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
.|. ..+. .+|+++++++.+.. .+... ...+..+. . .+|+++|+||+|+
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-~----~v~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-K----RVNIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-c----cCCEEEEEECCCc
Confidence 110 1222 36788888887642 22222 22233332 2 6899999999999
Q ss_pred CCC
Q psy1315 138 PNA 140 (202)
Q Consensus 138 ~~~ 140 (202)
...
T Consensus 156 l~~ 158 (276)
T cd01850 156 LTP 158 (276)
T ss_pred CCH
Confidence 654
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-15 Score=117.72 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=73.2
Q ss_pred eEEEEEEcCCCCC-----chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 68 INFLIWDVGGQEK-----LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 68 ~~~~~~D~~G~~~-----~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
..+.++||||... +.......+..+|++++|+|..+..+..+ ..+...+.. .....|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk-~~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILA-VGQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHh-cCCCCCEEEEEEcccCCCccc
Confidence 4578999999543 23345567899999999999986433332 122232332 111359999999999864222
Q ss_pred --HHHHHHHhCchhh-cCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 143 --IKQIEKLLGLYEL-NNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 143 --~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
...+...+..... .......+|++||++|.|++.+++.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3444444321110 1223456999999999999999999887
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=112.31 Aligned_cols=157 Identities=23% Similarity=0.285 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC--CCc-----cccccceeeEeecccccccceEEEEEEcCCCC-------CchhhHH
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY--LNT-----VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-------KLRPLWK 86 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-------~~~~~~~ 86 (202)
-|.+||-|++|||||++.+...+. .+| .|..|+... ...-.|.+-|.||.- .......
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~--------~~~~sfv~ADIPGLIEGAs~G~GLG~~FL 232 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV--------DGGESFVVADIPGLIEGASEGVGLGLRFL 232 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe--------cCCCcEEEecCcccccccccCCCccHHHH
Confidence 478999999999999999998653 122 333333222 223358889999932 2333455
Q ss_pred hhhcCCCEEEEEEeCCCchh---HHHHHHHHHHHHcc-CCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceE
Q psy1315 87 SYTRCTDGIIFVIDSTDVER---MEEVKIELIKTIKN-NDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~ 161 (202)
..++++.++++|+|++..+. .+.......++..+ ....++|.+||+||+|+... ...+.....+... .....
T Consensus 233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~---~~~~~ 309 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA---LGWEV 309 (369)
T ss_pred HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh---cCCCc
Confidence 66788999999999985442 44444444444333 23448999999999996543 3333333333211 11222
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
.++ +||.+++|++++...+.+.+.+.+
T Consensus 310 ~~~-ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 310 FYL-ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cee-eehhcccCHHHHHHHHHHHHHHhh
Confidence 222 999999999999999999988776
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=124.41 Aligned_cols=119 Identities=21% Similarity=0.171 Sum_probs=82.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-----Cc------------cccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-----NT------------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
..+..+|+++|++++|||||+++|+..... .. ....|++.......+ ..+...+.++||||+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~-~~~~~~i~liDTPG~ 83 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTC-FWKGHRINIIDTPGH 83 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEE-EECCEEEEEEcCCCH
Confidence 446779999999999999999999753110 00 012234433333222 346778999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
..+...+...++.+|++|+|+|+.+.-.-.. ...+...... ++|.++++||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~~----~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADKY----GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHHc----CCCEEEEEECCCCCCC
Confidence 8888888889999999999999986432222 2233333332 6899999999999753
|
|
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-15 Score=107.36 Aligned_cols=177 Identities=15% Similarity=0.215 Sum_probs=101.5
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccc--------------------------------------cc-
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTI--------------------------------------GF- 53 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~--------------------------------------~~- 53 (202)
....+++..|+|+|..|||||||+++|...-.....|.. |+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 345678899999999999999999999643211111110 10
Q ss_pred ---eeeEe------ecccccccceEEEEEEcCCCCCc------hhhHHhhh--cCCCEEEEEEeCCCchhHHHHHHHHHH
Q psy1315 54 ---NCEKV------KGQIGKCKGINFLIWDVGGQEKL------RPLWKSYT--RCTDGIIFVIDSTDVERMEEVKIELIK 116 (202)
Q Consensus 54 ---~~~~~------~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~ 116 (202)
++... .+.....+.....++||||+-+. .+..-..+ ...-++++++|..+..+-.....-++.
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 00000 00001223345788999996431 11111222 224677888886543332222223333
Q ss_pred HHccCCCCCCcEEEEeeCCCCCCCcCHH----H---HHHHhC---------------chhhcCcceEEEEEeeeecCCCH
Q psy1315 117 TIKNNDNFNVPILILANKQDLPNAIQIK----Q---IEKLLG---------------LYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 117 ~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~---~~~~~~---------------~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
.....+....|.||+.||+|+.+..... + .+..+. +..-....++..+-+||.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 3333344489999999999998742222 1 111111 10111246788999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKKR 189 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~ 189 (202)
+++|..+.+.+.++.
T Consensus 253 ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 253 DDFFTAVDESVDEYE 267 (366)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888776553
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=115.97 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=116.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC--------------CccccccceeeE----eecccccccceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL--------------NTVPTIGFNCEK----VKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~--------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~~G 77 (202)
.++--+++++.+-..|||||..+++..... +.....|.|... ..+...+++.+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 345568899999999999999999653211 111222444333 33333456789999999999
Q ss_pred CCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH---HHHHHhCchh
Q psy1315 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK---QIEKLLGLYE 154 (202)
Q Consensus 78 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~---~~~~~~~~~~ 154 (202)
+..|.......+..|.++++|+|++..-.-+.+.+.+..+-+ +.-+|-|.||+||+...... ++++.+.
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Adpervk~eIe~~iG--- 157 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAADPERVKQEIEDIIG--- 157 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCCHHHHHHHHHHHhC---
Confidence 999988777778889999999999965444555666666544 67899999999998765433 3344332
Q ss_pred hcCcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 155 LNNMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
......+.+||++|.|++++++.|++.+..
T Consensus 158 ---id~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 158 ---IDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred ---CCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 233457889999999999999999988753
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.5e-15 Score=121.98 Aligned_cols=118 Identities=20% Similarity=0.150 Sum_probs=81.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-----Cc------------cccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-----NT------------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
.++..+|+++|++++|||||+++|+..... .. ....|++........ ......+.++||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~-~~~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTC-FWKDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEE-EECCeEEEEEeCCCc
Confidence 345679999999999999999999742110 00 012344444433333 445678999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
..+.......++.+|++|+|+|+...-.... ...+...... +.|.++++||+|+..
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~----~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY----KVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc----CCCEEEEEECCCCCC
Confidence 8877777778888999999999875432222 2233333333 789999999999875
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-14 Score=108.96 Aligned_cols=125 Identities=24% Similarity=0.336 Sum_probs=93.9
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+...+.+||++|+...+..|..++.+++++|+|+|+++ ...+......+..+.......+.|++|++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 44568999999999999999999999999999999986 34677777788888876666789999999999
Q ss_pred CCCCC-----------------cCHHHHHHHhCch--hhc---CcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 136 DLPNA-----------------IQIKQIEKLLGLY--ELN---NMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 136 Dl~~~-----------------~~~~~~~~~~~~~--~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+... ........++... ... ....+..+.++|.+-.++..+|+.+.+.+.+...
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 97431 1122222222110 000 1245778899999999999999999998887654
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=121.23 Aligned_cols=110 Identities=22% Similarity=0.196 Sum_probs=75.3
Q ss_pred EcCCCCCHHHHHHHhhcCCCCC-----c------------cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHh
Q psy1315 25 LGLDSAGKTTALYRLKFDQYLN-----T------------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS 87 (202)
Q Consensus 25 ~G~~~~GKssL~~~l~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 87 (202)
+|++++|||||+++|+...... . ....+.+........ ....+.+.+|||||+..+...+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~-~~~~~~i~liDtPG~~~~~~~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTC-EWKGHKINLIDTPGHVDFTGEVER 79 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEE-EECCEEEEEEECCCcHHHHHHHHH
Confidence 6999999999999996532210 0 001123332222222 345688999999999888888888
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
++..+|++++|+|+++....... ..+...... +.|+++|+||+|+...
T Consensus 80 ~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~~----~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 80 ALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEKY----GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHHc----CCCEEEEEECCCCCCC
Confidence 99999999999999875544432 233333222 7899999999998753
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-14 Score=104.82 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=81.5
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch--h-
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--P- 83 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~- 83 (202)
++.+++.+.....++|+|+|.+|+|||||+|++++..........+.+.....+.. ......+.+|||||..... .
T Consensus 19 ~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~-~~~g~~i~vIDTPGl~~~~~~~~ 97 (249)
T cd01853 19 ELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSG-TVDGFKLNIIDTPGLLESVMDQR 97 (249)
T ss_pred HHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEE-EECCeEEEEEECCCcCcchhhHH
Confidence 45566777888999999999999999999999999876544333333333333222 2345689999999955431 0
Q ss_pred h-------HHhhhc--CCCEEEEEEeCCCc-hhHH--HHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 84 L-------WKSYTR--CTDGIIFVIDSTDV-ERME--EVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 84 ~-------~~~~~~--~~d~~ilv~d~~~~-~s~~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
. ...++. ..|++++|..++.. .... .+.+.+...... .-..++++|.||+|...
T Consensus 98 ~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~--~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 98 VNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP--SIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh--hhHhCEEEEEeCCccCC
Confidence 1 222332 47888888766642 1222 223333333221 11357999999999854
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-15 Score=116.25 Aligned_cols=177 Identities=12% Similarity=0.087 Sum_probs=119.6
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-----chh
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-----LRP 83 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-----~~~ 83 (202)
++.+++...+.-+++++|-|++|||||++.+..... ......+|+....+...++.-..+++.||||.-. ...
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv--evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~ 235 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD--EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNI 235 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc--ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhH
Confidence 566677788999999999999999999998886653 2233345555555554466777889999999321 111
Q ss_pred -hHH--hhh-cCCCEEEEEEeCCCchhH--HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC
Q psy1315 84 -LWK--SYT-RCTDGIIFVIDSTDVERM--EEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN 157 (202)
Q Consensus 84 -~~~--~~~-~~~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 157 (202)
... ..+ +--.+++|+.|++..+.+ ......+..+.. ...++|+|+|+||+|+.......+..+.+- .....
T Consensus 236 IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~m~~edL~~~~~~ll-~~~~~ 312 (620)
T KOG1490|consen 236 IEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDAMRPEDLDQKNQELL-QTIID 312 (620)
T ss_pred HHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccccCccccCHHHHHHH-HHHHh
Confidence 111 111 224789999999987654 444444444433 234899999999999976544433332221 12224
Q ss_pred cceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 158 MHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
..+++++.+|..+.+|+.++-....+.+...+-
T Consensus 313 ~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RV 345 (620)
T KOG1490|consen 313 DGNVKVVQTSCVQEEGVMDVRTTACEALLAARV 345 (620)
T ss_pred ccCceEEEecccchhceeeHHHHHHHHHHHHHH
Confidence 566899999999999999999988887766644
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-14 Score=105.89 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=79.1
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh--
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL-- 84 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-- 84 (202)
+++.+++....+.++|+++|.+|+||||++|++++.....+....+.+........ ......+.++||||..+....
T Consensus 26 ~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~-~~~G~~l~VIDTPGL~d~~~~~e 104 (313)
T TIGR00991 26 ELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSR-TRAGFTLNIIDTPGLIEGGYIND 104 (313)
T ss_pred HHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE-EECCeEEEEEECCCCCchHHHHH
Confidence 35667778888999999999999999999999998765433222222222111111 235678999999996543221
Q ss_pred -HHhhh------cCCCEEEEEEeCCCc--hhH-HHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 85 -WKSYT------RCTDGIIFVIDSTDV--ERM-EEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 85 -~~~~~------~~~d~~ilv~d~~~~--~s~-~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
....+ ...|++++|.+++.. ... ..+...+...+.. .-..++||+.|++|..
T Consensus 105 ~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~--~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 105 QAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK--DIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh--hhhccEEEEEECCccC
Confidence 11112 258999999766532 212 2222233333221 1245789999999975
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=110.49 Aligned_cols=162 Identities=16% Similarity=0.198 Sum_probs=119.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC--C-------------ccccccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL--N-------------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~--~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
--+|+++.+...|||||+..|+.+... + .....|.|.-.....+ .++.+.++++||||+..|..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav-~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAV-NYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEecccee-ecCCeEEEEecCCCcCCccc
Confidence 457999999999999999999876421 1 1122356665555555 67889999999999999999
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHH----HhCchhhcCcc
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEK----LLGLYELNNMH 159 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~----~~~~~~~~~~~ 159 (202)
.....+...|++++++|+.+. .+...+..+...+.. +.+.|||+||+|.++......+.. ++.+..-..+.
T Consensus 84 EVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 999999999999999999863 344445445555554 778888999999988765544333 33333334568
Q ss_pred eEEEEEeeeecCC----------CHHHHHHHHHHHHH
Q psy1315 160 LYYIQATCAITGD----------GLHEGINELYQLIL 186 (202)
Q Consensus 160 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 186 (202)
.+|+++.|+..|. ++.-||+.|++.+.
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 8999999998764 67788888777653
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-14 Score=107.54 Aligned_cols=125 Identities=25% Similarity=0.359 Sum_probs=94.1
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCc----------hhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDV----------ERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+...+.+||++|+...+..|..++.+++++|+|+|+++- +.+......+..+.......+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 457799999999999999999999999999999999863 5677777777777776666789999999999
Q ss_pred CCCCC------------------cCHHHHHHHhCch--hhc--CcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 136 DLPNA------------------IQIKQIEKLLGLY--ELN--NMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 136 Dl~~~------------------~~~~~~~~~~~~~--~~~--~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+..+ ........++... ... ....+..+.++|..-.++..+|+.+.+.+.....
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l 315 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNL 315 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHHh
Confidence 96431 1222222222110 010 1346778889999999999999999998877653
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=92.86 Aligned_cols=137 Identities=23% Similarity=0.168 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC----CCCchhhHHhhhcCCCEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----QEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----~~~~~~~~~~~~~~~d~~i 96 (202)
+|+++|..|+|||||.+++.+.... +..| ..+++ +.. -.+|||| +..+........+.+|.++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-ykKT-----QAve~---~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-YKKT-----QAVEF---NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-hccc-----ceeec---cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 6899999999999999999876421 1222 22222 111 1459999 3333344455568899999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|-.++++++--.-. +. ....+|+|-|++|.|+.++...+.....+. ....-++|++|+.++.|+++
T Consensus 70 ~v~~and~~s~f~p~------f~--~~~~k~vIgvVTK~DLaed~dI~~~~~~L~-----eaGa~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 70 YVHAANDPESRFPPG------FL--DIGVKKVIGVVTKADLAEDADISLVKRWLR-----EAGAEPIFETSAVDNQGVEE 136 (148)
T ss_pred eeecccCccccCCcc------cc--cccccceEEEEecccccchHhHHHHHHHHH-----HcCCcceEEEeccCcccHHH
Confidence 999999876532211 01 122567999999999998766666666542 23456799999999999999
Q ss_pred HHHHHHH
Q psy1315 177 GINELYQ 183 (202)
Q Consensus 177 l~~~l~~ 183 (202)
+++.|..
T Consensus 137 l~~~L~~ 143 (148)
T COG4917 137 LVDYLAS 143 (148)
T ss_pred HHHHHHh
Confidence 9998764
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=107.65 Aligned_cols=117 Identities=20% Similarity=0.266 Sum_probs=73.4
Q ss_pred EEEEEEcCCCCCc---hhhHHhhh---cC--CCEEEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 69 NFLIWDVGGQEKL---RPLWKSYT---RC--TDGIIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 69 ~~~~~D~~G~~~~---~~~~~~~~---~~--~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.+.+||+||+.+. ...+..+. .. ++++++++|+......... ..++...... ...+.|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhcC
Confidence 5889999997653 23333333 22 8999999999654333222 2222221111 112799999999999987
Q ss_pred CcCHHHHHHHhCc-----------------------hhhcC-cceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 140 AIQIKQIEKLLGL-----------------------YELNN-MHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 140 ~~~~~~~~~~~~~-----------------------~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..........+.. ..+.. ....+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 6554444433321 00101 22357899999999999999999988763
|
|
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-14 Score=104.34 Aligned_cols=180 Identities=13% Similarity=0.064 Sum_probs=121.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeeccc-ccccceEEEEEEcCCCCCchhhHHhhhcCC--
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQI-GKCKGINFLIWDVGGQEKLRPLWKSYTRCT-- 92 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~-- 92 (202)
....-+|+|+|+.|+|||||+.+|.+.. ...+..|..|....+.- ...+..++.+|=..|......+....+...
T Consensus 49 lpsgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 49 LPSGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 3467789999999999999999999887 44455555555554432 123446788998889777666666665443
Q ss_pred --CEEEEEEeCCCchhH-HHHHHHHH------------------------HHHccCC-----------------------
Q psy1315 93 --DGIIFVIDSTDVERM-EEVKIELI------------------------KTIKNND----------------------- 122 (202)
Q Consensus 93 --d~~ilv~d~~~~~s~-~~~~~~~~------------------------~~~~~~~----------------------- 122 (202)
.++|++.|.+++... +.+..|.. ...+.+.
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de 206 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE 206 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence 478889999997433 23222221 1111000
Q ss_pred -------------CCCCcEEEEeeCCCCCC-----CcCHHHHHHHhC--chhhcCcceEEEEEeeeecCCCHHHHHHHHH
Q psy1315 123 -------------NFNVPILILANKQDLPN-----AIQIKQIEKLLG--LYELNNMHLYYIQATCAITGDGLHEGINELY 182 (202)
Q Consensus 123 -------------~~~~pvivv~nK~Dl~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 182 (202)
.-++|++||++|||... .....+..++++ +..||...+..+|++|+++..|++-+..+|+
T Consensus 207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence 01369999999999843 222333333332 3567788999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhh
Q psy1315 183 QLILKKRKLQKTNKM 197 (202)
Q Consensus 183 ~~~~~~~~~~~~~~~ 197 (202)
+..+-...+.+....
T Consensus 287 hr~yG~~fttpAlVV 301 (473)
T KOG3905|consen 287 HRSYGFPFTTPALVV 301 (473)
T ss_pred HHhcCcccCCcceEe
Confidence 998776665554433
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-14 Score=118.54 Aligned_cols=125 Identities=18% Similarity=0.095 Sum_probs=84.5
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC---------------CCC----ccccccceeeEeecccccccceE
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ---------------YLN----TVPTIGFNCEKVKGQIGKCKGIN 69 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~---------------~~~----~~~~~~~~~~~~~~~~~~~~~~~ 69 (202)
+..+....+...+|+++|+.++|||||+++|+... +.. ...|+........+.. ....+.
T Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~-~~~~~~ 87 (720)
T TIGR00490 9 IKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY-EGNEYL 87 (720)
T ss_pred HHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee-cCCceE
Confidence 44455566778899999999999999999997531 111 1112222111111112 456789
Q ss_pred EEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 70 ~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
+.+|||||+.++.......++.+|++|+|+|+.+.-.... ...+...... +.|.++|+||+|...
T Consensus 88 i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~~----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 88 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALKE----NVKPVLFINKVDRLI 152 (720)
T ss_pred EEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHHc----CCCEEEEEEChhccc
Confidence 9999999999998888899999999999999875322222 1222222222 678899999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=107.60 Aligned_cols=83 Identities=25% Similarity=0.351 Sum_probs=54.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-----cccccceeeEeecc---------------cccccceEEEEEEcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NT-----VPTIGFNCEKVKGQ---------------IGKCKGINFLIWDVGG 77 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~-----~~~~~~~~~~~~~~---------------~~~~~~~~~~~~D~~G 77 (202)
++|+++|.|++|||||+|+|.+.... .+ .|+.|........+ ........+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987653 11 23333222110000 0012346799999999
Q ss_pred C----CCchhh---HHhhhcCCCEEEEEEeCC
Q psy1315 78 Q----EKLRPL---WKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 78 ~----~~~~~~---~~~~~~~~d~~ilv~d~~ 102 (202)
. .....+ ....++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 223333 334489999999999996
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.7e-14 Score=105.51 Aligned_cols=170 Identities=14% Similarity=0.167 Sum_probs=100.3
Q ss_pred hHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC----CC-------CCcccccc-----------------ceee
Q psy1315 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD----QY-------LNTVPTIG-----------------FNCE 56 (202)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~----~~-------~~~~~~~~-----------------~~~~ 56 (202)
..++++...+...+.+.|.|.|++|+|||||+..+... .. ++.++..+ ..+.
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~ 121 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFI 121 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEE
Confidence 34566666666778899999999999999999987431 10 11111100 0011
Q ss_pred Eeecc----------------cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHcc
Q psy1315 57 KVKGQ----------------IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120 (202)
Q Consensus 57 ~~~~~----------------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~ 120 (202)
..... .-+...+.+.++||+|.-..... ....+|.++++.+....+.+..... .+.
T Consensus 122 r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~-- 193 (332)
T PRK09435 122 RPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIM-- 193 (332)
T ss_pred EecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhh--
Confidence 11000 00123467899999995422222 4566999999987544344433321 111
Q ss_pred CCCCCCcEEEEeeCCCCCCCcCHH----HHHHHhCchhhc-CcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 121 NDNFNVPILILANKQDLPNAIQIK----QIEKLLGLYELN-NMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 121 ~~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
...-++|+||+|+....... ++...+...... ..+..|++.+||+++.|++++++.|.+.+.
T Consensus 194 ----E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 194 ----ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred ----hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22348999999987643222 233333211100 113358999999999999999999998653
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-14 Score=101.26 Aligned_cols=168 Identities=13% Similarity=0.047 Sum_probs=93.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccc-cccceeeEeecccccccceEEEEEEcCCCCC--c--h---hh----HHh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVP-TIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--L--R---PL----WKS 87 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~--~---~~----~~~ 87 (202)
++|+++|.+|+||||++|.+++........ ..+++........ ......+.++||||--+ . . .. ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~-~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG-EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 589999999999999999999887643331 1122222222111 34567899999999321 1 1 11 112
Q ss_pred hhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHH-H--hCchhhcCcceEEE
Q psy1315 88 YTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEK-L--LGLYELNNMHLYYI 163 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~-~--~~~~~~~~~~~~~~ 163 (202)
.....|++++|+.+++.. .-.....++..++... -...++||.|..|........+... . -.+..+...++-.+
T Consensus 80 ~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~ 157 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY 157 (212)
T ss_dssp TTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred ccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence 345689999999997321 1223333444444321 1356889999998766544322111 0 01122223445556
Q ss_pred EEeeee------cCCCHHHHHHHHHHHHHHHHh
Q psy1315 164 QATCAI------TGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 164 ~~~Sa~------~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+..+.+ ....+.+|++.|-+.+.++..
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 655554 335689999998888877653
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=117.04 Aligned_cols=131 Identities=13% Similarity=0.143 Sum_probs=89.9
Q ss_pred cchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc---------------cccccceee----Eeeccc-
Q psy1315 3 KNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT---------------VPTIGFNCE----KVKGQI- 62 (202)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~---------------~~~~~~~~~----~~~~~~- 62 (202)
....+.+..+....++..+|+++|+.++|||||+++|++...... ....|.+.. ...+..
T Consensus 3 ~~~~~~~~~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 82 (836)
T PTZ00416 3 NFTVDQIREIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHD 82 (836)
T ss_pred ccCHHHHHHHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecc
Confidence 345667777777778888999999999999999999986322100 000122222 111110
Q ss_pred ----ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 63 ----GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 63 ----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
.+.....+.++||||+.++.......++.+|++|+|+|+.+.-... ....|..+... +.|+++++||+|+.
T Consensus 83 ~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~~----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 83 LEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQE----RIRPVLFINKVDRA 157 (836)
T ss_pred cccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHHc----CCCEEEEEEChhhh
Confidence 0123577999999999999888888999999999999998642222 22334444333 68999999999997
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-13 Score=105.77 Aligned_cols=176 Identities=14% Similarity=0.130 Sum_probs=116.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccc-cccceEEEEEEcCCCCCchhhHHhhhcC--
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIG-KCKGINFLIWDVGGQEKLRPLWKSYTRC-- 91 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~-- 91 (202)
.....-.|+|+|+.++|||||+.+|.+... ..++.|..|......-. ..+...+.+|-..|...+..+....+..
T Consensus 21 ~~~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~ 98 (472)
T PF05783_consen 21 KLPSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN 98 (472)
T ss_pred cCCCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence 444667999999999999999999987653 33444544443333211 2234578999998877777776665543
Q ss_pred --CCEEEEEEeCCCchhHH-HHHHHH----------------------------HHHHc---cC-----------C----
Q psy1315 92 --TDGIIFVIDSTDVERME-EVKIEL----------------------------IKTIK---NN-----------D---- 122 (202)
Q Consensus 92 --~d~~ilv~d~~~~~s~~-~~~~~~----------------------------~~~~~---~~-----------~---- 122 (202)
--++|+|.|.+.|..+- .+..|+ ..... .. .
T Consensus 99 l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~ 178 (472)
T PF05783_consen 99 LPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSD 178 (472)
T ss_pred ccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccc
Confidence 25889999999975432 211111 11000 00 0
Q ss_pred ---------------CCCCcEEEEeeCCCCCCCc-----C----HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 123 ---------------NFNVPILILANKQDLPNAI-----Q----IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 123 ---------------~~~~pvivv~nK~Dl~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
.-++|++||++|+|..... . ...++..+ ..+|..++..+|+||++...|++.++
T Consensus 179 ~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~L--R~~cL~yGAsL~yts~~~~~n~~~L~ 256 (472)
T PF05783_consen 179 DESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYL--RTFCLKYGASLIYTSVKEEKNLDLLY 256 (472)
T ss_pred cccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHH--HHHHHhcCCeEEEeeccccccHHHHH
Confidence 0037999999999975321 1 12233333 56777889999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy1315 179 NELYQLILKKRKLQKT 194 (202)
Q Consensus 179 ~~l~~~~~~~~~~~~~ 194 (202)
.+|.+.+.......+.
T Consensus 257 ~yi~h~l~~~~f~~~~ 272 (472)
T PF05783_consen 257 KYILHRLYGFPFKTPA 272 (472)
T ss_pred HHHHHHhccCCCCCCc
Confidence 9999998876654433
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=114.87 Aligned_cols=149 Identities=20% Similarity=0.175 Sum_probs=93.0
Q ss_pred CCHHHHHHHhhcCCCCCc-----cccccceeeEeecccc-----------cccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 30 AGKTTALYRLKFDQYLNT-----VPTIGFNCEKVKGQIG-----------KCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 30 ~GKssL~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
++||||+.++.+...... +..+|.+.-....... ....-.+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 349999999987765321 2333433322221000 011123899999999999888888888899
Q ss_pred EEEEEEeCCC---chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--------------HHHHHHH-------
Q psy1315 94 GIIFVIDSTD---VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--------------IKQIEKL------- 149 (202)
Q Consensus 94 ~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~~~~~~~------- 149 (202)
++++|+|+++ +.++..+. .+... +.|+++|+||+|+..... .......
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~~----~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQY----KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHHc----CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999986 33333322 22222 689999999999963211 0111110
Q ss_pred ----hCchhh---------cCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 150 ----LGLYEL---------NNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 150 ----~~~~~~---------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+....+ ......+++++||++|+|++++++.|..+..
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 110100 0124678999999999999999998876544
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-13 Score=107.47 Aligned_cols=158 Identities=17% Similarity=0.181 Sum_probs=111.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC------------------------------CCccccccceeeEeeccccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY------------------------------LNTVPTIGFNCEKVKGQIGK 64 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 64 (202)
..+..++++|+|+..+|||||+.++++.-. .......|++.......+ +
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f-e 251 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF-E 251 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE-e
Confidence 456889999999999999999999876421 011233467777777666 6
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHH------HHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEE------VKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~------~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
.....+++.|.||+..|...+..-...+|+.|+|+|++.. .|+. ..+....+++... -..+||++||+|+.
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V 328 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLV 328 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHcC--cceEEEEeeccccc
Confidence 7788999999999999988888888889999999999752 2321 2233344444322 56789999999998
Q ss_pred CCc------CHHHHHHHh-CchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 139 NAI------QIKQIEKLL-GLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 139 ~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
+-. ....+..++ +.-.+ ...++.|++||+.+|+|+-..
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf-~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGF-KESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCc-ccCCcceEecccccCCccccc
Confidence 632 122334444 21222 345678999999999997654
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-14 Score=106.80 Aligned_cols=177 Identities=16% Similarity=0.120 Sum_probs=90.5
Q ss_pred HHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCC--CCcccc--ccceeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 6 AAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQY--LNTVPT--IGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
+.+...+..-...+++|+|+|.+|+|||||+|+|.+-.. ....++ ..+|.....+.. .+.-.+.+||.||....
T Consensus 22 s~i~~~l~~~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~--p~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 22 SKIREALKDIDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH--PKFPNVTLWDLPGIGTP 99 (376)
T ss_dssp HHHHHHHHHHHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGS
T ss_pred HHHHHHHHHhhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC--CCCCCCeEEeCCCCCCC
Confidence 334455555567899999999999999999999976322 111222 234455555544 33335899999994332
Q ss_pred hhhHHhh-----hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC--C-------CcC----H
Q psy1315 82 RPLWKSY-----TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP--N-------AIQ----I 143 (202)
Q Consensus 82 ~~~~~~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~--~-------~~~----~ 143 (202)
......| +...|.+|++.+- .|.....++...+... ++|+++|-+|+|.. . ... .
T Consensus 100 ~f~~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L 172 (376)
T PF05049_consen 100 NFPPEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLL 172 (376)
T ss_dssp S--HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHH
T ss_pred CCCHHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHH
Confidence 2222233 4557988887754 3555444555444443 89999999999851 1 111 1
Q ss_pred HHHHHHhCchhh-cCcceEEEEEeeeecC--CCHHHHHHHHHHHHHHHHhh
Q psy1315 144 KQIEKLLGLYEL-NNMHLYYIQATCAITG--DGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 144 ~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~--~~v~~l~~~l~~~~~~~~~~ 191 (202)
++++........ ......++|-+|+.+- .+...+.+.+.+-+..+++.
T Consensus 173 ~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 173 QEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp HHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred HHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 122221111111 1234567888888754 45777888888777666543
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=115.21 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=91.7
Q ss_pred cchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC------------Cc---cccccceee----Eeeccc-
Q psy1315 3 KNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL------------NT---VPTIGFNCE----KVKGQI- 62 (202)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------~~---~~~~~~~~~----~~~~~~- 62 (202)
...++.+.++.....+..+|+++|+.++|||||+.+|+..... +. ....|.+.. ...+..
T Consensus 3 ~~~~~~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 82 (843)
T PLN00116 3 KFTAEELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMT 82 (843)
T ss_pred ccCHHHHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecc
Confidence 3456777888888889999999999999999999999754321 00 000122222 121210
Q ss_pred ----------ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEe
Q psy1315 63 ----------GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132 (202)
Q Consensus 63 ----------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~ 132 (202)
.....+.++++||||+.+|.......++.+|++|+|+|+.+.-.... ...|...... ++|+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~~----~~p~i~~i 157 (843)
T PLN00116 83 DESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALGE----RIRPVLTV 157 (843)
T ss_pred cccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHHC----CCCEEEEE
Confidence 02246788999999999999888898999999999999985433222 2233444333 78999999
Q ss_pred eCCCCC
Q psy1315 133 NKQDLP 138 (202)
Q Consensus 133 nK~Dl~ 138 (202)
||+|..
T Consensus 158 NK~D~~ 163 (843)
T PLN00116 158 NKMDRC 163 (843)
T ss_pred ECCccc
Confidence 999987
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.2e-14 Score=102.48 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCCchhhHHhhh--------cCCCEEEEEEeCCC---chhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 69 NFLIWDVGGQEKLRPLWKSYT--------RCTDGIIFVIDSTD---VERMEEVK-IELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 69 ~~~~~D~~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~---~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
.+.++|||||.++...+.... ...-++|+++|... +..|-... .-..-+.+. +.|.|.|.||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~----~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL----ELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH----TSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC----CCCEEEeeeccC
Confidence 688999999987766555554 44668899999753 33333221 112222222 799999999999
Q ss_pred CCCCcCH--------------------HHHHHHhCchhhcCcceE-EEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 137 LPNAIQI--------------------KQIEKLLGLYELNNMHLY-YIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 137 l~~~~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+.+.... ..+...+. ..+...... .++++|+.+++|+.+++..+-+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~-~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIA-ELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHH-HHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 9872200 00111110 111123334 899999999999999999987764
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=101.23 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=102.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC----------Ccc----------------------ccccceeeEeecccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL----------NTV----------------------PTIGFNCEKVKGQIG 63 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~----------~~~----------------------~~~~~~~~~~~~~~~ 63 (202)
.+..++++.+|+..-|||||+-+|+++.-. ..+ ...|.|.+...--+
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF- 81 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF- 81 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec-
Confidence 356899999999999999999999876311 000 11234443322212
Q ss_pred cccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH
Q psy1315 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI 143 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 143 (202)
.....+|.+-||||++.|...+..-...+|++|+++|+. .......+.-..+... ..-..+||.+||+||.+..+.
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sL--LGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASL--LGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHH--hCCcEEEEEEeeecccccCHH
Confidence 456678999999999999999999989999999999995 4444433332222221 224578888999999886432
Q ss_pred HH---HHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 144 KQ---IEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 144 ~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
.. ..++..+...-......+++.||..|+|+-
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 21 122222111112344589999999999864
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=101.19 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=57.1
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeeccc--cc--------------ccceEEEEEEcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQI--GK--------------CKGINFLIWDVG 76 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~--------------~~~~~~~~~D~~ 76 (202)
-.+....++|+++|.|+||||||+|+|.+... ...+.+++|........ .+ .....+.++|+|
T Consensus 15 ~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp 93 (390)
T PTZ00258 15 LGRPGNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA 93 (390)
T ss_pred hccCCCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC
Confidence 33456788999999999999999999987653 22222222222211111 01 113358999999
Q ss_pred CCCC-------chhhHHhhhcCCCEEEEEEeCC
Q psy1315 77 GQEK-------LRPLWKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 77 G~~~-------~~~~~~~~~~~~d~~ilv~d~~ 102 (202)
|... +.......++++|++++|+|..
T Consensus 94 GLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 94 GLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 9331 2224445678899999999974
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.6e-13 Score=101.29 Aligned_cols=159 Identities=21% Similarity=0.041 Sum_probs=110.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
.|+..|+-..|||||+..+.+..-. +.....|++.+.-.+.. ......+.|+|.||++++-......+...|.+++|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~-~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYR-KLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEec-cCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 5788999999999999999886542 22222344444333322 34445899999999999988888888889999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
++.++ ...........++.. ......++|+||+|..++...+.....+.... ...+.++|.+|+++|+|++++.
T Consensus 81 V~~de--Gl~~qtgEhL~iLdl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~l--~l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 81 VAADE--GLMAQTGEHLLILDL--LGIKNGIIVLTKADRVDEARIEQKIKQILADL--SLANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred EeCcc--CcchhhHHHHHHHHh--cCCCceEEEEeccccccHHHHHHHHHHHHhhc--ccccccccccccccCCCHHHHH
Confidence 99973 222222222222332 12455699999999987654444433332211 1456778999999999999999
Q ss_pred HHHHHHHH
Q psy1315 179 NELYQLIL 186 (202)
Q Consensus 179 ~~l~~~~~ 186 (202)
+.|.++..
T Consensus 155 ~~l~~L~~ 162 (447)
T COG3276 155 NELIDLLE 162 (447)
T ss_pred HHHHHhhh
Confidence 99999885
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=94.65 Aligned_cols=144 Identities=15% Similarity=0.112 Sum_probs=85.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
......|+++|.+|+|||||++.+.+.... ......|. +... ......+.++||||.. ......++.+|+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~--~~~~~~i~~vDtPg~~---~~~l~~ak~aDv 106 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVV--TGKKRRLTFIECPNDI---NAMIDIAKVADL 106 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEEE--ecCCceEEEEeCCchH---HHHHHHHHhcCE
Confidence 456788999999999999999999865321 11122221 1111 2345678899999853 223344678999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcE-EEEeeCCCCCCCcC-HHHHHHHhCchhh-cCcceEEEEEeeeecC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPI-LILANKQDLPNAIQ-IKQIEKLLGLYEL-NNMHLYYIQATCAITG 171 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pv-ivv~nK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~ 171 (202)
+++++|++....... ..+...... .+.|. ++|+||+|+.+... .......+..... ......+++++||+++
T Consensus 107 VllviDa~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 107 VLLLIDASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred EEEEEecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 999999975433222 222222222 15674 45999999974322 2222222221111 0124578999999987
Q ss_pred CC
Q psy1315 172 DG 173 (202)
Q Consensus 172 ~~ 173 (202)
-.
T Consensus 182 ~~ 183 (225)
T cd01882 182 GR 183 (225)
T ss_pred CC
Confidence 54
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=97.53 Aligned_cols=126 Identities=23% Similarity=0.344 Sum_probs=93.7
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCc----------hhHHHHHHHHHHHHccCCCCCCcEEEEeeC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDV----------ERMEEVKIELIKTIKNNDNFNVPILILANK 134 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~pvivv~nK 134 (202)
.+...+.+.|+|||...+.-|.+++.+++++|+|+++++= ..+......+..+.......+.++|+.+||
T Consensus 192 ~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK 271 (354)
T KOG0082|consen 192 IKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNK 271 (354)
T ss_pred eCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeec
Confidence 4557899999999998899999999999999999998752 234455567777777777779999999999
Q ss_pred CCCCCC-----------------cCHHHHHHHh-----CchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHhh
Q psy1315 135 QDLPNA-----------------IQIKQIEKLL-----GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 135 ~Dl~~~-----------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
.|+-.+ ...++...++ .+... ....+....+.|+.-.+|+.+|..+.+.+..+..+
T Consensus 272 ~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~-~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk 349 (354)
T KOG0082|consen 272 KDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKN-KDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLK 349 (354)
T ss_pred HHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcc-cCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 998531 1112222222 11111 12466778889999999999999999999877653
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=91.43 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=63.8
Q ss_pred eEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHH
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQ 145 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~ 145 (202)
....++++.|..-.....+.. +|.+|.|+|+.+.++... ...... ...-++++||+|+.+. .....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~l---~~~~i~vvD~~~~~~~~~---~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPEL---ADLTIFVIDVAAGDKIPR---KGGPGI------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchhh---hCcEEEEEEcchhhhhhh---hhHhHh------hhccEEEEEhhhccccccccHHH
Confidence 456678888843222222222 588999999986544321 111111 2344899999999853 23333
Q ss_pred HHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 146 IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+...+.. + ....+++++||++|+|++++++++.+.+
T Consensus 160 ~~~~~~~--~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 160 MERDAKK--M--RGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHH--h--CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3333321 1 3467899999999999999999998654
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=94.31 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=97.7
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC------C-----CCcccc------------------ccceeeE
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ------Y-----LNTVPT------------------IGFNCEK 57 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~------~-----~~~~~~------------------~~~~~~~ 57 (202)
.++..+.+.......|+|+|++|+|||||+..+.... . ++..+. .+.....
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRS 101 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeee
Confidence 4556666667788999999999999999999975420 0 000110 0000000
Q ss_pred eecc---------------cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCC
Q psy1315 58 VKGQ---------------IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNND 122 (202)
Q Consensus 58 ~~~~---------------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~ 122 (202)
.... .-+...+.+.|+||+|.-. .....+..+|.++++-... +.+.+......+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l----- 170 (300)
T TIGR00750 102 MPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPG---TGDDLQGIKAGL----- 170 (300)
T ss_pred cCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCC---ccHHHHHHHHHH-----
Confidence 0000 0022357789999998432 1123466688888886543 233333222222
Q ss_pred CCCCcEEEEeeCCCCCCCcCHHHHHHHh--Cchhh-c--CcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 123 NFNVPILILANKQDLPNAIQIKQIEKLL--GLYEL-N--NMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 123 ~~~~pvivv~nK~Dl~~~~~~~~~~~~~--~~~~~-~--~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..+|.++|+||+|+............+ ....+ . ..+..+++++||+++.|++++++++.+...
T Consensus 171 -~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 171 -MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred -hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 257889999999997654322211111 00111 0 123346899999999999999999988643
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=95.33 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=99.8
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC----CCC-----------Ccccccc---ceeeEee-------ccc
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD----QYL-----------NTVPTIG---FNCEKVK-------GQI 62 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~----~~~-----------~~~~~~~---~~~~~~~-------~~~ 62 (202)
+.+..+.+....+.|+|+|+.++|||||+++|++. ... -..+..| +|+.... +..
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 66778889999999999999999999999999987 222 1223344 4443333 322
Q ss_pred ccccceEEEEEEcCCCC--------Cchh---------------------hHHhhhc-CCCEEEEEE-eCC----CchhH
Q psy1315 63 GKCKGINFLIWDVGGQE--------KLRP---------------------LWKSYTR-CTDGIIFVI-DST----DVERM 107 (202)
Q Consensus 63 ~~~~~~~~~~~D~~G~~--------~~~~---------------------~~~~~~~-~~d~~ilv~-d~~----~~~s~ 107 (202)
.++-...+.++||+|.. +... -+...+. ++|+.|+|. |.+ .++.+
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y 165 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDY 165 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccc
Confidence 23445788999999811 1111 1445556 899999998 653 11233
Q ss_pred -HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee--cCCCHHHHHHHH
Q psy1315 108 -EEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI--TGDGLHEGINEL 181 (202)
Q Consensus 108 -~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~v~~l~~~l 181 (202)
....+++..+... ++|+++|.|++|...... ..+...+ ....+.+++++|+. +...+..+++.+
T Consensus 166 ~~aEe~~i~eLk~~----~kPfiivlN~~dp~~~et-~~l~~~l-----~eky~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 166 VEAEERVIEELKEL----NKPFIILLNSTHPYHPET-EALRQEL-----EEKYDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred hHHHHHHHHHHHhc----CCCEEEEEECcCCCCchh-HHHHHHH-----HHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence 3344555555554 899999999999443322 2222211 12234676777654 233444444443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=93.71 Aligned_cols=169 Identities=17% Similarity=0.235 Sum_probs=99.4
Q ss_pred hHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC------CC-----CCcccccc------------------cee
Q psy1315 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD------QY-----LNTVPTIG------------------FNC 55 (202)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~------~~-----~~~~~~~~------------------~~~ 55 (202)
..++++.+.+...+.+.|.+-|+||+|||||+..|... +. ++.+|..| +..
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfI 94 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFI 94 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEE
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEE
Confidence 34677888887788999999999999999999998431 11 12222211 111
Q ss_pred eEeecc---------------cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHcc
Q psy1315 56 EKVKGQ---------------IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120 (202)
Q Consensus 56 ~~~~~~---------------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~ 120 (202)
...... +.+--.+.+.+++|.|--. .--....-+|.+++|..+.-.+..+.+..-+.++
T Consensus 95 RS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQ---sE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--- 168 (266)
T PF03308_consen 95 RSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQ---SEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--- 168 (266)
T ss_dssp EEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSST---HHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---
T ss_pred eecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCc---cHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh---
Confidence 111110 0022345688889987321 1123345699999999987666666555444444
Q ss_pred CCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhh-cCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 121 NDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYEL-NNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 121 ~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+-++|+||+|...... ..+++..+.+..- ...+..|++.|||.++.|++++++.|.+..
T Consensus 169 ------aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 169 ------ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp -------SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ------ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4479999999654422 3334444432211 234668999999999999999999987744
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-12 Score=107.06 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=84.8
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc------------c---ccccceeeE----eecccccccc
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT------------V---PTIGFNCEK----VKGQIGKCKG 67 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~------------~---~~~~~~~~~----~~~~~~~~~~ 67 (202)
+.+..+....++..+|+++|+.++|||||+.+|+....... . ...+.+... ..+.. ..+.
T Consensus 8 ~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~-~~~~ 86 (731)
T PRK07560 8 EKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY-EGKE 86 (731)
T ss_pred HHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe-cCCc
Confidence 34455556677788999999999999999999975321100 0 001122111 11211 3356
Q ss_pred eEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
+.+.++||||+.++.......++.+|++|+|+|+...-... ....+...... +.|.|+++||+|...
T Consensus 87 ~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 87 YLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE----RVKPVLFINKVDRLI 153 (731)
T ss_pred EEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc----CCCeEEEEECchhhc
Confidence 78999999999999888888999999999999987542222 22233333332 567899999999863
|
|
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=92.26 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=96.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch-----hhHHhhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-----PLWKSYTRCTD 93 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----~~~~~~~~~~d 93 (202)
.-||+++|.+|+||||+-..++.+.........|-|.+....+..--....+.+||++|++.+- ......+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4589999999999999877666444333333445544544444423455789999999988432 24456788899
Q ss_pred EEEEEEeCCCchhHHH---HHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHH--HHhCchhhcCcceEEEEEeee
Q psy1315 94 GIIFVIDSTDVERMEE---VKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIE--KLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~---~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++++|||++..+-..+ ....+..+++ ..+...+.+..+|+|+......+.+- ............++.++++|.
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 9999999986543333 2333333444 46677888889999997654443322 222223344556688899887
Q ss_pred ec
Q psy1315 169 IT 170 (202)
Q Consensus 169 ~~ 170 (202)
.+
T Consensus 162 wD 163 (295)
T KOG3886|consen 162 WD 163 (295)
T ss_pred hh
Confidence 54
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=96.95 Aligned_cols=164 Identities=20% Similarity=0.068 Sum_probs=108.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCC---CC-----------ccccc-----ccee-eEeeccc-c-----c-ccceE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQY---LN-----------TVPTI-----GFNC-EKVKGQI-G-----K-CKGIN 69 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~---~~-----------~~~~~-----~~~~-~~~~~~~-~-----~-~~~~~ 69 (202)
+..++|.++|+...|||||..+|.+--- .+ |..+. .+.. ..+.... + . .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 6789999999999999999999976421 10 00000 0000 0000000 0 0 11246
Q ss_pred EEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc----CHHH
Q psy1315 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI----QIKQ 145 (202)
Q Consensus 70 ~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~----~~~~ 145 (202)
+.|+|.||++..-..+.+-..--|++++|+++++++.-......+..+.-. .-+.+|++-||+|+...+ ..++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHHH
Confidence 889999999866655555555579999999999877665555444333211 146789999999998753 3344
Q ss_pred HHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 146 IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
++.|++- . -..+.|++++||..+.|++-+++.|.+.+.
T Consensus 165 Ik~FvkG-t--~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 165 IKEFVKG-T--VAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHhcc-c--ccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 5555542 1 135789999999999999999999988764
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=86.70 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=77.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCc-c-ccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNT-V-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+|++++|+.|+|||+|+.++....+... . ++.+ +......+.+.++.+++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~----------------------------~~~~~~~~~~s~~~~~~ 52 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG----------------------------IDVYDPTSYESFDVVLQ 52 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh----------------------------hhhccccccCCCCEEEE
Confidence 5899999999999999999976665421 1 2222 22334456677899999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
||+.++.+++... |...+... ...+.|.++++||.|+........ .....++++|++++.|+.
T Consensus 53 v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~~~------------~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 53 CWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQVAT------------EEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCcCCH------------HHHHHHHHHhCCCcchhh
Confidence 9999998888765 55444433 345789999999999743221111 111235678899999884
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=95.75 Aligned_cols=96 Identities=23% Similarity=0.234 Sum_probs=73.9
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN 157 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 157 (202)
+++..+.+.+++++|.+++|||++++. ++..+.+|+..... .+.|+++|+||+||.+...... ... ..+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~--~~~--~~~-~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEK--EQL--DIY-R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHH--HHH--HHH-H
Confidence 667778888999999999999999877 89898888875543 3799999999999975433221 111 112 2
Q ss_pred cceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 158 MHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
..+++++++||++|.|++++|+.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 35678999999999999999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.1e-12 Score=87.02 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=42.7
Q ss_pred EEEEEEcCCCC----CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 69 NFLIWDVGGQE----KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 69 ~~~~~D~~G~~----~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
.+.++|+||.. .....+..+++.+|++|+|.+.+...+-.... .+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcCC---CCeEEEEEcCC
Confidence 48999999932 23467888889999999999998754444333 333333322 44589999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.7e-12 Score=95.60 Aligned_cols=82 Identities=21% Similarity=0.158 Sum_probs=52.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeE----eecccc------------cccceEEEEEEcCCCCC---
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEK----VKGQIG------------KCKGINFLIWDVGGQEK--- 80 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~----~~~~~~------------~~~~~~~~~~D~~G~~~--- 80 (202)
++|+++|.|++|||||+|++.+... ...+.+++|... ..+.-. ......+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 7899999999999999999998763 222222222221 121100 00113589999999432
Q ss_pred ----chhhHHhhhcCCCEEEEEEeCC
Q psy1315 81 ----LRPLWKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 81 ----~~~~~~~~~~~~d~~ilv~d~~ 102 (202)
........++++|++++|+|+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2223445578899999999984
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=95.12 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=88.4
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcC--CC----------C-----------CccccccceeeEeecccccccceE
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFD--QY----------L-----------NTVPTIGFNCEKVKGQIGKCKGIN 69 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~--~~----------~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 69 (202)
.....++-+++++-+|.+|||||..+|+-- -. . +....++++.....+ ++..+.
T Consensus 6 ~~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF---~Y~~~~ 82 (528)
T COG4108 6 AQEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQF---DYADCL 82 (528)
T ss_pred HHHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEe---ccCCeE
Confidence 334556778999999999999999998521 10 0 112334566666666 677889
Q ss_pred EEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 70 ~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
+++.||||++.|+.-+...+.-+|++|+|+|+- ...+.-...+.+.++ ..+.|++-.+||+|-..
T Consensus 83 iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaA--KGiE~qT~KLfeVcr---lR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 83 VNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAA--KGIEPQTLKLFEVCR---LRDIPIFTFINKLDREG 147 (528)
T ss_pred EeccCCCCccccchhHHHHHHhhheeeEEEecc--cCccHHHHHHHHHHh---hcCCceEEEeecccccc
Confidence 999999999999988888888899999999986 345444444445544 45899999999999654
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-11 Score=86.79 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=71.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCcc-------ccc--------------------------------------
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV-------PTI-------------------------------------- 51 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~-------~~~-------------------------------------- 51 (202)
-....++++|+.|+||||+++.+.+..+.+.. |+.
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 46678999999999999999999886521110 000
Q ss_pred -----cceeeEeecccccccceEEEEEEcCCCCC-------------chhhHHhhhcC-CCEEEEEEeCCCchhHHHHHH
Q psy1315 52 -----GFNCEKVKGQIGKCKGINFLIWDVGGQEK-------------LRPLWKSYTRC-TDGIIFVIDSTDVERMEEVKI 112 (202)
Q Consensus 52 -----~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~-~d~~ilv~d~~~~~s~~~~~~ 112 (202)
++.-..+.+.+.......+.++|+||-.. ...+...|+++ .+++++|+|+...-.-.....
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 01111111111122335789999999531 22356677785 458889998763212112112
Q ss_pred HHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 113 ELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 113 ~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
....+. ..+.|+++|+||+|..+.
T Consensus 184 ia~~ld----~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEVD----PQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHH----HcCCcEEEEEECCCCCCc
Confidence 222222 237899999999998754
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=86.02 Aligned_cols=170 Identities=17% Similarity=0.210 Sum_probs=108.0
Q ss_pred hHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC------CC-----CCcccccc------------------cee
Q psy1315 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD------QY-----LNTVPTIG------------------FNC 55 (202)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~------~~-----~~~~~~~~------------------~~~ 55 (202)
+.+++..+.+...+...|.+.|.||+|||||+..|... +. ++.+|-.| ...
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFi 116 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFI 116 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEE
Confidence 45778888889999999999999999999999988432 10 11122111 111
Q ss_pred eEeecc---------------cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHcc
Q psy1315 56 EKVKGQ---------------IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120 (202)
Q Consensus 56 ~~~~~~---------------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~ 120 (202)
...... ..+--.+.+.|++|.|--.. --.....+|.++++.-..-.+..+.+..-+.++
T Consensus 117 Rs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--- 190 (323)
T COG1703 117 RSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--- 190 (323)
T ss_pred eecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhh---
Confidence 111000 01223456888899873211 113445589999999876666666666554444
Q ss_pred CCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchh---hcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 121 NDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYE---LNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 121 ~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
--++|+||.|..... ...++...+.... -...+..|++.|||.+|+|++++++.|.+...
T Consensus 191 ------aDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 191 ------ADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred ------hheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 347899999965542 2223333333321 12347788999999999999999999887654
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=100.51 Aligned_cols=166 Identities=22% Similarity=0.197 Sum_probs=106.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-----CccccccceeeEeec------ccc-----cccceEEEEEEcCCCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-----NTVPTIGFNCEKVKG------QIG-----KCKGINFLIWDVGGQEK 80 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-----~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~D~~G~~~ 80 (202)
-+.+-||++|+..+|||-|+..+.+.... ....-+|.|+..... .+. ...--.+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 36678999999999999999998764331 223334555544331 000 12223478899999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCC------CcCH----------
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPN------AIQI---------- 143 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~------~~~~---------- 143 (202)
|..+.......||.+|+|+|+... ++... .-+..+ ...+.|+||.+||+|-.- ....
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhG--lepqtiESi~lL----R~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHG--LEPQTIESINLL----RMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhhccccccceEEEEeehhcc--CCcchhHHHHHH----HhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 999999999999999999999742 22111 111122 233899999999999642 0000
Q ss_pred --HHH------------HHHhCchhhc----CcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 144 --KQI------------EKLLGLYELN----NMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 144 --~~~------------~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
.++ ++.+....+. ...-+.++++||.+|+||.+|+-+|+++....
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 000 1111111110 12346689999999999999999999977644
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=89.98 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=101.5
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcC----------CC-----CCccccccceeeEeecccccccceEEEEEEcC
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFD----------QY-----LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 76 (202)
...+.+.+.+|..+|+...|||||..++... .| .+.....|+|.......+ ......+..+|+|
T Consensus 5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahvey-et~~rhyahVDcP 83 (394)
T COG0050 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEY-ETANRHYAHVDCP 83 (394)
T ss_pred hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEE-ecCCceEEeccCC
Confidence 3457789999999999999999999887431 11 112223356665555444 4566678889999
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCHH-----HHHHHh
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQIK-----QIEKLL 150 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~-----~~~~~~ 150 (202)
|+..|-..+..-....|+.|+|+++++. .+...+..++...+. +.| ++++.||+|+.++.+.- ++.+.+
T Consensus 84 GHaDYvKNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarqv----Gvp~ivvflnK~Dmvdd~ellelVemEvreLL 158 (394)
T COG0050 84 GHADYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQV----GVPYIVVFLNKVDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred ChHHHHHHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhhc----CCcEEEEEEecccccCcHHHHHHHHHHHHHHH
Confidence 9999988888877889999999999873 233434444433333 554 56667999998743222 234444
Q ss_pred CchhhcCcceEEEEEeeeec
Q psy1315 151 GLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~~Sa~~ 170 (202)
..+.+ .....|++.-||..
T Consensus 159 s~y~f-~gd~~Pii~gSal~ 177 (394)
T COG0050 159 SEYGF-PGDDTPIIRGSALK 177 (394)
T ss_pred HHcCC-CCCCcceeechhhh
Confidence 43333 33577888888763
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.2e-11 Score=88.65 Aligned_cols=163 Identities=20% Similarity=0.185 Sum_probs=95.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC----CC--Ccccccc------ceeeEeecc--cccccceEEEEEEcCCCCCchh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ----YL--NTVPTIG------FNCEKVKGQ--IGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~----~~--~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
..+++.++|+..||||||.+++..-. |+ +.+.+.| +.......+ .+.++...+.++|+||+...-.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 45999999999999999999996421 21 1222222 222222221 2356678899999999865554
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHH-------HHHHhCchhh
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQ-------IEKLLGLYEL 155 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~-------~~~~~~~~~~ 155 (202)
......+-.|..++|+|+.....-+...-.+.-.+. -...|||.||.|...+ ..... ++..++...
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~- 159 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG- 159 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC-
Confidence 444455557999999999743222211111111111 2345677788776433 22222 222222111
Q ss_pred cCcceEEEEEeeeecC----CCHHHHHHHHHHHHHH
Q psy1315 156 NNMHLYYIQATCAITG----DGLHEGINELYQLILK 187 (202)
Q Consensus 156 ~~~~~~~~~~~Sa~~~----~~v~~l~~~l~~~~~~ 187 (202)
...+.|++++||..| +++.++.+.+...+.+
T Consensus 160 -f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 160 -FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred -cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 235689999999999 6677777766666543
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=88.50 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=85.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC--C-------cc---c-----cccceeeEeec---------------cc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL--N-------TV---P-----TIGFNCEKVKG---------------QI 62 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~-------~~---~-----~~~~~~~~~~~---------------~~ 62 (202)
..+....|+|+|.+|+|||||+++++..... . .. . ..+........ ..
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 3556889999999999999999999753110 0 00 0 00000000000 00
Q ss_pred ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 63 GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 63 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
.......+.++|+.|.-.... .+....+..+.|+|+.+.+.... . ... ....|.++++||+|+.+...
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~------~~~~a~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPG------MFKEADLIVINKADLAEAVG 165 (207)
T ss_pred hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHh------HHhhCCEEEEEHHHccccch
Confidence 001133567778777211100 11123455667777764332111 0 011 11567899999999975422
Q ss_pred --HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 143 --IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 143 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.......+. .. ....+++++||+++.|++++++++.+.
T Consensus 166 ~~~~~~~~~l~--~~--~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 FDVEKMKADAK--KI--NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhHHHHHHHHH--Hh--CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 233333322 11 245789999999999999999998764
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.28 E-value=7e-11 Score=95.81 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=72.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch-------hh---H
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-------PL---W 85 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~---~ 85 (202)
....++|+++|.+|+||||++|++++............+........ ......+.++||||..... .. .
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~-~idG~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEG-LVQGVKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEE-EECCceEEEEECCCCCccccchHHHHHHHHHH
Confidence 34567899999999999999999999865433222122222222211 2245679999999944321 11 2
Q ss_pred Hhhhc--CCCEEEEEEeCCCchhH-H--HHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 86 KSYTR--CTDGIIFVIDSTDVERM-E--EVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 86 ~~~~~--~~d~~ilv~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
..++. .+|++|+|..++..... + .+.+.+..++.. .--..+|||.|+.|...
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~--~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP--SIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH--HhHcCEEEEEeCCccCC
Confidence 22333 47999999987633221 1 222333333332 11457899999999864
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-11 Score=90.09 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=68.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCcc-----------ccccceeeEeecccccccceEEEEEEcCCCCCc---hhh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTV-----------PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL---RPL 84 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---~~~ 84 (202)
.++|+|+|..|+|||||+|.|++....... ++..+......... ++..+.+.++||||.... ...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEE-NGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEE-TCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEecc-CCcceEEEEEeCCCccccccchhh
Confidence 589999999999999999999986543211 11123333333322 445678999999992210 000
Q ss_pred -----------HHhhh-------------cCCCEEEEEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 85 -----------WKSYT-------------RCTDGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 85 -----------~~~~~-------------~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
...++ .+.|+++|+++++. .++..+.- .+..+.. .+++|-|+.|+|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls~-----~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLSK-----RVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHTT-----TSEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhcc-----cccEEeEEecccccC
Confidence 11111 12589999999875 33333332 3333332 678999999999876
Q ss_pred CcCHHH
Q psy1315 140 AIQIKQ 145 (202)
Q Consensus 140 ~~~~~~ 145 (202)
..+...
T Consensus 157 ~~el~~ 162 (281)
T PF00735_consen 157 PEELQA 162 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=93.72 Aligned_cols=126 Identities=20% Similarity=0.235 Sum_probs=91.0
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCcc----------cc------ccceeeE----eeccccccc
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV----------PT------IGFNCEK----VKGQIGKCK 66 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~----------~~------~~~~~~~----~~~~~~~~~ 66 (202)
+++.-+........+++++|+-++|||+|+..|..+..+... .+ .|++... ....-.+++
T Consensus 116 ~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~K 195 (971)
T KOG0468|consen 116 EYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGK 195 (971)
T ss_pred HHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCc
Confidence 455666777888899999999999999999999876433211 00 1222111 111112567
Q ss_pred ceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
.+-+++.||||+..|.......++-+|++++|+|+-+.-.+.. .+.+....+. +.|+++|.||.|.
T Consensus 196 S~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq~----~~~i~vviNKiDR 261 (971)
T KOG0468|consen 196 SYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQN----RLPIVVVINKVDR 261 (971)
T ss_pred eeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHhc----cCcEEEEEehhHH
Confidence 7889999999999999999999999999999999986544443 3344444443 8999999999996
|
|
| >KOG0705|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-11 Score=96.28 Aligned_cols=163 Identities=18% Similarity=0.260 Sum_probs=118.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.-.++|++++|..++|||+|+++++...|... .|.-|.....+.. ++....+.+.|.+|... ..|...+|+
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv---~gqs~lLlirdeg~~~~-----aQft~wvda 98 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVV---DGQSHLLLIRDEGGHPD-----AQFCQWVDA 98 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEe---eccceEeeeecccCCch-----hhhhhhccc
Confidence 34689999999999999999999999988644 4443443333433 56677788889888433 356678999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+||.+.+..+|+.+......+..+......|+++++++.-.... ....+...+ ...+....+.+|++++.+|.
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r---~l~~~~krcsy~et~atyGl 175 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRAR---QLSAQMKRCSYYETCATYGL 175 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHH---HHHHhcCccceeecchhhhh
Confidence 9999999999999998888777776655668899998886432211 111222222 12234566788999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
++..+|+.+..++...+
T Consensus 176 nv~rvf~~~~~k~i~~~ 192 (749)
T KOG0705|consen 176 NVERVFQEVAQKIVQLR 192 (749)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999988776553
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8e-11 Score=81.54 Aligned_cols=151 Identities=19% Similarity=0.050 Sum_probs=84.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCcccc------------------ccceeeEeecc-c----------------c
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPT------------------IGFNCEKVKGQ-I----------------G 63 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~------------------~~~~~~~~~~~-~----------------~ 63 (202)
-+.|.|.|++|||||+|+.+++......+... .+.....+... . .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 48999999999999999999764321110000 11111111110 0 0
Q ss_pred cccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH
Q psy1315 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI 143 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 143 (202)
......+.|++..|+- ...-++--..+.-|+|+|++..+.... +....-...-++|+||.|+......
T Consensus 93 ~~~~~Dll~iEs~GNL---~~~~sp~L~d~~~v~VidvteGe~~P~---------K~gP~i~~aDllVInK~DLa~~v~~ 160 (202)
T COG0378 93 DFPDLDLLFIESVGNL---VCPFSPDLGDHLRVVVIDVTEGEDIPR---------KGGPGIFKADLLVINKTDLAPYVGA 160 (202)
T ss_pred cCCcCCEEEEecCcce---ecccCcchhhceEEEEEECCCCCCCcc---------cCCCceeEeeEEEEehHHhHHHhCc
Confidence 1111356666766621 111111122348889999875432110 0000001256899999999876443
Q ss_pred --HHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 144 --KQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 144 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+.+....+ . -.+..+++++|+++|+|++++++|+....
T Consensus 161 dlevm~~da~--~--~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 161 DLEVMARDAK--E--VNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred cHHHHHHHHH--H--hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 44433322 1 24678999999999999999999987653
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=95.93 Aligned_cols=119 Identities=20% Similarity=0.184 Sum_probs=86.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-----C------------ccccccceeeEeeccccccc-ceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-----N------------TVPTIGFNCEKVKGQIGKCK-GINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G 77 (202)
.++.-+|+++|+-++|||||..+++..... + .....|.|........ ..+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~-~~~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTL-FWKGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEE-EEcCceEEEEeCCCC
Confidence 557789999999999999999999753211 0 1111234444333322 334 58999999999
Q ss_pred CCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 78 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
+-+|.......++-.|++|+|+|+...-..+. ...|.....+ ++|.+++.||+|....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~~----~vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADKY----GVPRILFVNKMDRLGA 143 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhhc----CCCeEEEEECcccccc
Confidence 99999999999999999999999985433333 2344444444 8999999999998654
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=90.93 Aligned_cols=120 Identities=25% Similarity=0.362 Sum_probs=86.2
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
....+.++|++|+...+.-|..++.+++++|+|+++++ ...+.+....+..+.......+.|+||+.||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 56678999999999889999999999999999999864 23466677788888877667799999999999
Q ss_pred CCCCC--------------------cCHHHHHHHh-----CchhhcCc-ceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 136 DLPNA--------------------IQIKQIEKLL-----GLYELNNM-HLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 136 Dl~~~--------------------~~~~~~~~~~-----~~~~~~~~-~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
|+... ........++ ........ ..+.++.|+|....++..+|+.+.+.+
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 97321 1222222222 11111111 566778899999999999999887653
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.8e-10 Score=83.50 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC-------CCccccccceeeEe----ecc--c---ccccceEEEEEEcCC-----
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY-------LNTVPTIGFNCEKV----KGQ--I---GKCKGINFLIWDVGG----- 77 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~-------~~~~~~~~~~~~~~----~~~--~---~~~~~~~~~~~D~~G----- 77 (202)
.++++++|-|+||||||+|+++.... ....|..|..+-.. .+. . .......+.++|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999987652 11223333222111 000 0 012345789999998
Q ss_pred --CCCchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 78 --QEKLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 78 --~~~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
.+.+.......++.+|+++.|+++.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 34566677788899999999999874
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=84.81 Aligned_cols=154 Identities=20% Similarity=0.153 Sum_probs=99.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC---CccccccceeeEeecccccccceEEEEEEcCCCC---------Cch
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE---------KLR 82 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~ 82 (202)
...+..-|.++|-.++|||||+++|...... .-..|...|...... +....+.+.||-|.- .|.
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~L----psg~~vlltDTvGFisdLP~~LvaAF~ 249 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHL----PSGNFVLLTDTVGFISDLPIQLVAAFQ 249 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccC----CCCcEEEEeechhhhhhCcHHHHHHHH
Confidence 4567788999999999999999999955432 224555566666665 334467888999921 122
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCC----cEEEEeeCCCCCCCcCHHHHHHHhCchhhcCc
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV----PILILANKQDLPNAIQIKQIEKLLGLYELNNM 158 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~----pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 158 (202)
. .......+|.++.|.|+++|+--......+.-+... .-+.. .++=|-||.|........ +.
T Consensus 250 A-TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~------------E~ 315 (410)
T KOG0410|consen 250 A-TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEE------------EK 315 (410)
T ss_pred H-HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCcc------------cc
Confidence 2 223346699999999999987665544443333332 22222 345566777765432211 11
Q ss_pred ceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 159 HLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 159 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
.+ -+.+|+.+|+|++++...+-..+...
T Consensus 316 n~--~v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 316 NL--DVGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred CC--ccccccccCccHHHHHHHHHHHhhhh
Confidence 11 56789999999999999887766543
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-10 Score=88.56 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=102.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.+.+.++|+.++|||.|++.+.+..+.. +..+....+....+.+ .+....+.+.|.+-. ....+...- ..+|
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~-~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEV-KGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeee-ccccceEEEeecCcc-ccccccCcc-ceee
Confidence 34578999999999999999999999987753 2233333333333333 355667777777743 111111111 6699
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-----CHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-----QIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++.++||.+++.+|......+...... ...|.++|++|+|+.+.. ++.+....+. -..| +..|.
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~-------i~~P-~~~S~ 566 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLG-------LPPP-IHISS 566 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcC-------CCCC-eeecc
Confidence 999999999999999988766654443 489999999999997643 2223333221 1222 33444
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILK 187 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~ 187 (202)
+. .+=.++|..|......
T Consensus 567 ~~-~~s~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 567 KT-LSSNELFIKLATMAQY 584 (625)
T ss_pred CC-CCCchHHHHHHHhhhC
Confidence 43 2228889888876643
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-10 Score=86.85 Aligned_cols=56 Identities=23% Similarity=0.195 Sum_probs=40.5
Q ss_pred CCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 125 NVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 125 ~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
..+-++|+||+|+.... ........++ . ..+..+++++||++|+|++++.+||.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr--~--lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAR--E--VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHH--h--hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999997632 2333333221 1 2356889999999999999999999764
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-10 Score=78.30 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=46.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
.+.++|+++|.||+|||||+|++.+.....+.++.|.|.....+.. .. .+.++||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~--~~--~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL--MK--RIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc--CC--CEEEEECcC
Confidence 3578899999999999999999999887777888887776655533 12 367999999
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.6e-10 Score=76.47 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=63.8
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+..++.++++++|++|+|+|++++...... .+..... ..+.|+++|+||+|+........... +....+
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~------~~~~~~ 70 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVL---ELGKKLLIVLNKADLVPKEVLEKWKS------IKESEG 70 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHH------HHHhCC
Confidence 456778888899999999999875432221 1112111 12689999999999864322211111 111234
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.+++++||+++.|++++++.+.+.+.
T Consensus 71 ~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 71 IPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred CcEEEEEccccccHHHHHHHHHHHHh
Confidence 67899999999999999999988765
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-10 Score=83.86 Aligned_cols=80 Identities=24% Similarity=0.138 Sum_probs=49.7
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCCCCccccccceee----Eeecccc------------cccceEEEEEEcCCCCC-----
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCE----KVKGQIG------------KCKGINFLIWDVGGQEK----- 80 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~D~~G~~~----- 80 (202)
|+++|.|+||||||+|++.+.... ...-+++|.. .+.+.-. ......++++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~-~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE-AANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc-cccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 579999999999999999987652 2111222211 2222100 00112589999999332
Q ss_pred --chhhHHhhhcCCCEEEEEEeCC
Q psy1315 81 --LRPLWKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 81 --~~~~~~~~~~~~d~~ilv~d~~ 102 (202)
........++++|++++|+|+.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 2223445578899999999874
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.1e-10 Score=85.44 Aligned_cols=92 Identities=21% Similarity=0.174 Sum_probs=65.7
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
..+....+.++|.+++|+|+.++. ....+.+++..... .++|+++|+||+|+........+...+ ...+
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~~~~~~~~------~~~g 149 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQQQWQDRL------QQWG 149 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHHHHHHHHH------HhcC
Confidence 345555689999999999998765 34455666655432 379999999999997543222222222 2345
Q ss_pred EEEEEeeeecCCCHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
++++++||+++.|++++++.+..
T Consensus 150 ~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 150 YQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred CeEEEEEcCCCCCHHHHhhhhcc
Confidence 67899999999999999998865
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=82.10 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=80.1
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-----------ccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-----------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
...+..-.++|.++|+.|+|||||+|.|++..... ..++..+......+.- ++....++++||||.-+
T Consensus 16 ~~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 16 KLSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEE-DGFHLNLTVIDTPGFGD 94 (373)
T ss_pred HHHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeec-CCeEEEEEEeccCCccc
Confidence 33344778999999999999999999998763211 2233344444444433 45567889999999221
Q ss_pred ---ch-----------hhHHhhh--------------cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEe
Q psy1315 81 ---LR-----------PLWKSYT--------------RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132 (202)
Q Consensus 81 ---~~-----------~~~~~~~--------------~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~ 132 (202)
.. .+...|+ .+.|+++|.+.++. .++..+.-....-+.. .+.+|=|.
T Consensus 95 ~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI 169 (373)
T COG5019 95 FIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVI 169 (373)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeee
Confidence 11 1222222 12689999998764 4444443333222222 56788888
Q ss_pred eCCCCCCCcCHHHHH
Q psy1315 133 NKQDLPNAIQIKQIE 147 (202)
Q Consensus 133 nK~Dl~~~~~~~~~~ 147 (202)
.|+|.....+....+
T Consensus 170 ~KaD~lT~~El~~~K 184 (373)
T COG5019 170 AKADTLTDDELAEFK 184 (373)
T ss_pred eccccCCHHHHHHHH
Confidence 999987654444433
|
|
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.7e-10 Score=81.62 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=100.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCC----------CCCchh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----------QEKLRP 83 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~ 83 (202)
....+.++++|..++|||||++.++..+.. ...+..|.+.....+.+ .-.+.++|.|| .+.+..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v----~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV----GKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec----cceEEEEecCCcccccCCccCcchHhH
Confidence 356799999999999999999999876653 33446676666666544 22577899999 235566
Q ss_pred hHHhhhcCCCE---EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC------HHHHHH-HhCch
Q psy1315 84 LWKSYTRCTDG---IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ------IKQIEK-LLGLY 153 (202)
Q Consensus 84 ~~~~~~~~~d~---~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~------~~~~~~-~~~~~ 153 (202)
+...|+.+-+- +.+.+|++ -.+...+......+.+ .++|+.+|.||||...... ...+.. +..+.
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~s--v~i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDAS--VPIQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred hHHHHHHhhhhhheeeeeeecc--CCCCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 77777766543 33444544 2233333333333322 2899999999999854311 111111 22222
Q ss_pred hhcCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 154 ELNNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
.-+.....|++.+|+.++.|+++++-.+.+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhh
Confidence 222345567888999999999998766554
|
|
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-09 Score=78.38 Aligned_cols=90 Identities=22% Similarity=0.241 Sum_probs=59.2
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-Ccc--ccccceeeEeec------------ccccccceEEEEEEcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTV--PTIGFNCEKVKG------------QIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~--~~~~~~~~~~~~------------~~~~~~~~~~~~~D~~G~ 78 (202)
.+..+.+++++||-|+||||||+|.+...... ... .|+..+...+.. .-.......+++.|++|-
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 45668999999999999999999999876542 111 111111111111 001223457899999982
Q ss_pred -------CCchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 79 -------EKLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 79 -------~~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
+....-..+.++.+|+++.|+++.+
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 3445567778899999999998764
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-10 Score=77.39 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=47.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
....++++++|.||+|||||+|++.+.....+.+.+|+|.....+.. ...+.++||||
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~----~~~~~l~DtPG 171 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL----DKKVKLLDSPG 171 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe----CCCEEEEECcC
Confidence 34568999999999999999999999887777788888876655533 12578999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG0085|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=77.70 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=91.9
Q ss_pred eEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCC
Q psy1315 56 EKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFN 125 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~ 125 (202)
..+.+++ +-..+.|.++|.+|+.....-|.+++.+.-.+++++.+++ .+.++.....+..++...+..+
T Consensus 188 Gi~eypf-dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~n 266 (359)
T KOG0085|consen 188 GIIEYPF-DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 266 (359)
T ss_pred cceecCc-chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccC
Confidence 3344444 4556778899999998888899999999888887776543 4456666667777777777889
Q ss_pred CcEEEEeeCCCCCCCc------------------CHHHHHHHhCchhh-----cCcceEEEEEeeeecCCCHHHHHHHHH
Q psy1315 126 VPILILANKQDLPNAI------------------QIKQIEKLLGLYEL-----NNMHLYYIQATCAITGDGLHEGINELY 182 (202)
Q Consensus 126 ~pvivv~nK~Dl~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 182 (202)
.++|+..||.|+.++. .......++- ..+ ....-+.-.+++|+.-+|+.-+|..+.
T Consensus 267 ssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFIL-km~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVk 345 (359)
T KOG0085|consen 267 SSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFIL-KMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVK 345 (359)
T ss_pred CceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHH-HHHHhhCCCccceeeeeeeecccchhHHHHHHHHH
Confidence 9999999999986531 1111122211 111 112234455678999999999999999
Q ss_pred HHHHHHHh
Q psy1315 183 QLILKKRK 190 (202)
Q Consensus 183 ~~~~~~~~ 190 (202)
+.+.+...
T Consensus 346 DtiLq~~L 353 (359)
T KOG0085|consen 346 DTILQLNL 353 (359)
T ss_pred HHHHHhhh
Confidence 98877654
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.1e-10 Score=74.75 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=42.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
+++++|.+|+|||||+|++.+..........+.+.....+.. +. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL-TP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe-CC---CEEEEECCCc
Confidence 899999999999999999998887666666666666555543 21 5799999994
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=77.21 Aligned_cols=99 Identities=20% Similarity=0.144 Sum_probs=64.2
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhC-c-hhhcC
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLG-L-YELNN 157 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~-~-~~~~~ 157 (202)
+..++..+++++|++++|+|+.++..- |...+.. ...+.|+++|+||+|+..... ......... . .....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 577888999999999999999865311 1111111 123689999999999965432 222222210 0 00001
Q ss_pred cceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 158 MHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.....++++||++++|++++++.|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11235899999999999999999988763
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=77.39 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=49.6
Q ss_pred chHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCC--------CCccccccceeeEeecccccccceEEEEEEc
Q psy1315 4 NSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQY--------LNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75 (202)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (202)
...++.+.+.....+...++++|.+|+|||||+|+|.+... ...++..|+|.....+... . .+.++||
T Consensus 112 gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~---~~~~~Dt 187 (190)
T cd01855 112 GVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-N---GKKLYDT 187 (190)
T ss_pred CHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-C---CCEEEeC
Confidence 34455444444444567899999999999999999997542 2345556777777776552 1 4789999
Q ss_pred CC
Q psy1315 76 GG 77 (202)
Q Consensus 76 ~G 77 (202)
||
T Consensus 188 PG 189 (190)
T cd01855 188 PG 189 (190)
T ss_pred cC
Confidence 99
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=81.15 Aligned_cols=89 Identities=18% Similarity=0.097 Sum_probs=65.5
Q ss_pred HHhhhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEE
Q psy1315 85 WKSYTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 85 ~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (202)
.+..+.++|.+++|+|+.++. ++..+.+|+...... ++|+++|+||+|+.+......... .....+.++
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~----~ip~iIVlNK~DL~~~~~~~~~~~------~~~~~g~~v 141 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA----GIEPVIVLTKADLLDDEEEELELV------EALALGYPV 141 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc----CCCEEEEEEHHHCCChHHHHHHHH------HHHhCCCeE
Confidence 345588999999999999887 777777776655443 789999999999975421111111 112245789
Q ss_pred EEeeeecCCCHHHHHHHHHH
Q psy1315 164 QATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~ 183 (202)
+++||+++.|++++++.+..
T Consensus 142 ~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 142 LAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred EEEECCCCccHHHHHhhhcc
Confidence 99999999999999988764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.6e-09 Score=79.12 Aligned_cols=122 Identities=16% Similarity=0.276 Sum_probs=75.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc----------cccccceeeEeecccccccceEEEEEEcCCCCC----
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT----------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---- 80 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---- 80 (202)
+..-.+++.++|+.|.|||||+|.|+....... ..+..+......+.- ++-...++++||||..+
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee-~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEE-NGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecC-CCeEEeeEEeccCCCcccccc
Confidence 344579999999999999999999987744311 112233333333322 45567888999999221
Q ss_pred ----------chhhHHhhh-----------c--CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 81 ----------LRPLWKSYT-----------R--CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 81 ----------~~~~~~~~~-----------~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
..+....|+ . +.|+++|.+..+. ..+..+.-....-+.. .+.+|-|..|+|.
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~~----~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLSK----KVNLIPVIAKADT 170 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHhc----cccccceeecccc
Confidence 112222332 1 3699999999874 3344443333332222 6778888899998
Q ss_pred CCCcC
Q psy1315 138 PNAIQ 142 (202)
Q Consensus 138 ~~~~~ 142 (202)
.....
T Consensus 171 lT~~E 175 (366)
T KOG2655|consen 171 LTKDE 175 (366)
T ss_pred CCHHH
Confidence 76433
|
|
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-08 Score=71.32 Aligned_cols=166 Identities=19% Similarity=0.219 Sum_probs=103.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh---hHHhhhcCCCEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP---LWKSYTRCTDGI 95 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~d~~ 95 (202)
..+|+++|.-.+||||+...++.+..+...--.+.|.....-.+ ....+.+++||.||+-.+-. -....++.+.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~i-s~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHI-SNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhh-hhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 45699999999999999988887776644333333333322223 34678899999999765432 245668889999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHc-cCCCCCCcEEEEeeCCCCCCCcCHHHHHH----H----hCchhhcCcceEEEEEe
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIK-NNDNFNVPILILANKQDLPNAIQIKQIEK----L----LGLYELNNMHLYYIQAT 166 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~-~~~~~~~pvivv~nK~Dl~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~ 166 (202)
|+|+|+.+ +-++.+.+......+ +...+++.+=|...|.|=..+....+.+. . +.-... ..-...|+.+
T Consensus 106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gl-e~v~vsf~LT 183 (347)
T KOG3887|consen 106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGL-EKVQVSFYLT 183 (347)
T ss_pred EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhh-ccceEEEEEe
Confidence 99999975 233333333222222 22455788889999999765432222111 1 110111 2345667777
Q ss_pred eeecCCCHHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
|. ....+-|.|..+++.+..+
T Consensus 184 SI-yDHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 184 SI-YDHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred ee-cchHHHHHHHHHHHHHhhh
Confidence 76 4556889998888877644
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-09 Score=72.49 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=45.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
......+++++|.+|+|||||++++.+.....+.++.|.+........ ...+.+|||||
T Consensus 97 ~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~DtpG 155 (156)
T cd01859 97 IDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI----TSKIYLLDTPG 155 (156)
T ss_pred hcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc----CCCEEEEECcC
Confidence 345678999999999999999999998776677778887654433322 22689999998
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=75.97 Aligned_cols=130 Identities=18% Similarity=0.122 Sum_probs=81.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC--ccccccceeeEeeccc-------------------------------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN--TVPTIGFNCEKVKGQI------------------------------- 62 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~--~~~~~~~~~~~~~~~~------------------------------- 62 (202)
.....-|+++|.-..||||+++.|+...++. ..|.+...+.......
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 4567789999999999999999999988762 2222211111111110
Q ss_pred -------ccccceEEEEEEcCCCC-----------CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCC
Q psy1315 63 -------GKCKGINFLIWDVGGQE-----------KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF 124 (202)
Q Consensus 63 -------~~~~~~~~~~~D~~G~~-----------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~ 124 (202)
++.---.+.++||||.- .|.....=+..++|.|+++||+...+--++....+..+...
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---- 210 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---- 210 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----
Confidence 01111248999999932 34455666788899999999987554444444444444333
Q ss_pred CCcEEEEeeCCCCCCCcCHHHHHHH
Q psy1315 125 NVPILILANKQDLPNAIQIKQIEKL 149 (202)
Q Consensus 125 ~~pvivv~nK~Dl~~~~~~~~~~~~ 149 (202)
.-.+-||.||.|-.+..+.-.+...
T Consensus 211 EdkiRVVLNKADqVdtqqLmRVyGA 235 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDTQQLMRVYGA 235 (532)
T ss_pred cceeEEEeccccccCHHHHHHHHHH
Confidence 4456778999998776554444443
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.1e-09 Score=79.94 Aligned_cols=89 Identities=20% Similarity=0.183 Sum_probs=65.9
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
...|+|.+++|++++...++..+.+|+..... .++|+++|+||+|+............... + ...+++++++|
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y-~~~g~~v~~vS 189 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDI--Y-RNIGYRVLMVS 189 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHH--H-HhCCCeEEEEe
Confidence 35679999999999887888888888765432 37899999999999765332222222211 1 23457899999
Q ss_pred eecCCCHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQ 183 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~ 183 (202)
|+++.|++++++.+..
T Consensus 190 A~tg~GideL~~~L~~ 205 (347)
T PRK12288 190 SHTGEGLEELEAALTG 205 (347)
T ss_pred CCCCcCHHHHHHHHhh
Confidence 9999999999998865
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-09 Score=79.92 Aligned_cols=87 Identities=20% Similarity=0.209 Sum_probs=60.1
Q ss_pred hhcCCCEEEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
...++|.+++|+|+.++...... .+|+..... .++|+++|+||+|+.+.. ........ .+ ...+++++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~~--~~-~~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDL--EEARELLA--LY-RAIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCH--HHHHHHHH--HH-HHCCCeEEEE
Confidence 46889999999999887665554 445444433 278999999999996332 11111111 11 2235689999
Q ss_pred eeecCCCHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQ 183 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~ 183 (202)
||+++.|++++++.+..
T Consensus 148 SA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 148 SAKEGEGLDELKPLLAG 164 (298)
T ss_pred eCCCCccHHHHHhhccC
Confidence 99999999999988743
|
|
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.6e-08 Score=69.76 Aligned_cols=87 Identities=23% Similarity=0.324 Sum_probs=59.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCcccccc-ceeeEeecccccccceEEEEEEcCCCCCc-------hhhHHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG-FNCEKVKGQIGKCKGINFLIWDVGGQEKL-------RPLWKSY 88 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~ 88 (202)
+..-+|+++|-|.+|||||+..+..... .....+ +|...+...+ .++.-.+++.|.||.-+- ..+..+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi-~y~ga~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVI-HYNGANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceE-EecCceEEEecCcccccccccCCCCCceEEEE
Confidence 4567999999999999999998875432 112222 3334444433 667778999999994322 2334455
Q ss_pred hcCCCEEEEEEeCCCchh
Q psy1315 89 TRCTDGIIFVIDSTDVER 106 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s 106 (202)
.+.+|.+++|.|++..+.
T Consensus 137 ArtaDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSED 154 (364)
T ss_pred eecccEEEEEecCCcchh
Confidence 677999999999986443
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-09 Score=72.70 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=45.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++++++|.+|+|||||++++.+..+....+..+.+.....+.. . ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~-~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI-S---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe-c---CCEEEEECCCC
Confidence 4557999999999999999999999877666666666666655533 1 35789999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.5e-08 Score=74.60 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=98.9
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-----------------ccccccceeeEeeccc------c-------
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-----------------TVPTIGFNCEKVKGQI------G------- 63 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~------~------- 63 (202)
+....++.+++.|+.+.|||||+-.|.....++ ...+...++..+-+.- .
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 346678999999999999999998886554321 0111112222221110 0
Q ss_pred -----cccceEEEEEEcCCCCCchhh--HHhhhcCCCEEEEEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCC
Q psy1315 64 -----KCKGINFLIWDVGGQEKLRPL--WKSYTRCTDGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 64 -----~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+....-+.++|+.|++.|... .-..-+..|-.++++.+++. ...+.. .+--+... ..|++|+.||+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--~~~~tkEHLgi~~a~----~lPviVvvTK~ 265 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--VTKMTKEHLGIALAM----ELPVIVVVTKI 265 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--cchhhhHhhhhhhhh----cCCEEEEEEec
Confidence 112234788999999987643 33445779999999999854 222222 22222222 78999999999
Q ss_pred CCCCCcCHHHH----HHHhC------------------chhh-cCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 136 DLPNAIQIKQI----EKLLG------------------LYEL-NNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 136 Dl~~~~~~~~~----~~~~~------------------~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
|+..+...... ...++ .... ....-.|+|.+|+.+|+|++-+.+.+..
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 99764322211 11110 0011 1234689999999999999877666544
|
|
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.4e-09 Score=76.99 Aligned_cols=150 Identities=18% Similarity=0.192 Sum_probs=101.2
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcC----------CCC-----CccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFD----------QYL-----NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~----------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
.+.+.+.+|.-+|+...|||||..++..- +|. +.....|.|.....+.+ ......+-=+|+||+
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveY-eTa~RhYaH~DCPGH 127 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEY-ETAKRHYAHTDCPGH 127 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeee-eccccccccCCCCch
Confidence 35789999999999999999999887431 111 22233467776666644 444556667899999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HH----HHHHHhCch
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-IK----QIEKLLGLY 153 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~----~~~~~~~~~ 153 (202)
.+|-..+..-...-|++|+|+.++|. .+...+..++...+.. -..++|..||.|+.++.+ .+ ++...+...
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQVG---V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~ 203 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQVG---VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEF 203 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHcC---CceEEEEEecccccCCHHHHHHHHHHHHHHHHHc
Confidence 98888877777778999999999873 3555555555544431 246778889999985422 22 223333333
Q ss_pred hhcCcceEEEEEeeee
Q psy1315 154 ELNNMHLYYIQATCAI 169 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~ 169 (202)
.+ ...+.|++.-||.
T Consensus 204 gf-~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 204 GF-DGDNTPVIRGSAL 218 (449)
T ss_pred CC-CCCCCCeeecchh
Confidence 33 4467889888876
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.8e-09 Score=78.10 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=46.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++++++|.||||||||+|++.+.....+.+..|+|.....+.. ...+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL----GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe----CCcEEEEECCCc
Confidence 4678999999999999999999999887777777887777655433 124789999994
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.5e-09 Score=85.28 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=83.9
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCC------------C---CCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQ------------Y---LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
......-+|+++.+...|||||+..|+... | .+...+.|.|...-.+.. -.+.+.++++|+||+
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~-~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISL-LHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccc-ccCceEEEEecCCCc
Confidence 345567789999999999999999997542 1 133445566666655433 347789999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCch---hHHHHHHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVE---RMEEVKIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
-+|.+...+..+-+|++++++|+-+.- +..-+++.|. .+...++|.||+|
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--------~~~~~~lvinkid 135 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--------EGLKPILVINKID 135 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--------ccCceEEEEehhh
Confidence 999999999999999999999986432 2222222222 2677889999999
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.6e-09 Score=77.75 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=46.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++++++|.||+|||||+|++.+.....+.+..|+|.....+.. . -.+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~---~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-S---DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-C---CCEEEEECCCc
Confidence 3568999999999999999999998877777777777776655533 1 24789999995
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0447|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-07 Score=73.71 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=93.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-----------------cccc---------------------------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-----------------VPTI--------------------------- 51 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-----------------~~~~--------------------------- 51 (202)
.....+|+|||+..+||||.+..+...+..+- .|..
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 34678999999999999999988754432110 0000
Q ss_pred ---------ccee--eEeecccccccceEEEEEEcCCC-------------CCchhhHHhhhcCCCEEEEEEeCCCchhH
Q psy1315 52 ---------GFNC--EKVKGQIGKCKGINFLIWDVGGQ-------------EKLRPLWKSYTRCTDGIIFVIDSTDVERM 107 (202)
Q Consensus 52 ---------~~~~--~~~~~~~~~~~~~~~~~~D~~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~ 107 (202)
|.|. ..+...+....--...++|.||. +....+...|+++.++||+|+.- .|.
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSV 461 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSV 461 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCc
Confidence 2111 22222222233346789999991 12345788999999999999964 345
Q ss_pred HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 108 EEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
+..+.....+..+....+...|+|.+|.|+.+. ..+..++..+.-..+ -.....||.+
T Consensus 462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLF-PMKALGYfaV 521 (980)
T KOG0447|consen 462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLF-PMKALGYFAV 521 (980)
T ss_pred chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCcc-chhhcceeEE
Confidence 555556666666666779999999999999765 356666666543333 2233344444
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-08 Score=79.01 Aligned_cols=143 Identities=14% Similarity=0.111 Sum_probs=90.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
....++-++|+|+||+|||||++.|+....- .|+.--...+++. .+++..+++.++|.. . ..+....+-+|+
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk---~ti~~i~GPiTvv--sgK~RRiTflEcp~D--l-~~miDvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK---QTIDEIRGPITVV--SGKTRRITFLECPSD--L-HQMIDVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHH---hhhhccCCceEEe--ecceeEEEEEeChHH--H-HHHHhHHHhhhe
Confidence 3567888899999999999999999864211 1111111112221 467888999999942 2 233445566999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCC-cEEEEeeCCCCCCC-cCHHHHHHHhCchhhcC-cceEEEEEeeeec
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNV-PILILANKQDLPNA-IQIKQIEKLLGLYELNN-MHLYYIQATCAIT 170 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 170 (202)
+++.+|.. ..|+-....++.+.... +. .++-|+++.|+... .........++..-|.. ..+..+|..|...
T Consensus 137 VlLlIdgn--fGfEMETmEFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGN--FGFEMETMEFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccc--cCceehHHHHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99999987 55654444444444432 34 45677899999654 33445555554444433 3677888888653
|
|
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=76.95 Aligned_cols=159 Identities=20% Similarity=0.186 Sum_probs=96.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCC-----------------ccc-------cccceeeEeeccc---------cc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLN-----------------TVP-------TIGFNCEKVKGQI---------GK 64 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~-----------------~~~-------~~~~~~~~~~~~~---------~~ 64 (202)
-.++++++|...+|||||+--|..+..++ ... +.|++.....+.+ .+
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 46899999999999999998776543210 111 1222222211111 12
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcC--CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRC--TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
...--++++|.+|+.+|.......+.. .|.+.+|++++.. ..+..+.-+-+.... ++|+.|+.+|+|+.+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G--i~~tTrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG--ITWTTREHLGLIAAL---NIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCC--CccccHHHHHHHHHh---CCCeEEEEEeeccccchh
Confidence 223457899999988876554443332 6889999998743 333333333333322 899999999999977422
Q ss_pred HH----HHH-------------------HHh-CchhhcCcceEEEEEeeeecCCCHHHHHHHH
Q psy1315 143 IK----QIE-------------------KLL-GLYELNNMHLYYIQATCAITGDGLHEGINEL 181 (202)
Q Consensus 143 ~~----~~~-------------------~~~-~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (202)
.+ ++. +.+ .....+..+-.|+|.+|+.+|+|++-+...+
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 11 111 111 1122345667899999999999988765443
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=69.70 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=43.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
.....+++++|.+|+|||||+|.+.+.......+..++|........ ...+.++||||
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtPG 154 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL----DNKIKLLDTPG 154 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe----cCCEEEEECCC
Confidence 45678999999999999999999998765444444555555554432 13588999998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0099|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.4e-08 Score=70.98 Aligned_cols=126 Identities=23% Similarity=0.366 Sum_probs=85.1
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+.+.|++.|.+|+...+.-|..++....++|+|...+. .+.+.+....+..+.+........+|+.+||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 45679999999999999999999999999999998864 12334444445555555456678999999999
Q ss_pred CCCCC------------------------------cCHHHHHH-------HhCchhh--cCcceEEEEEeeeecCCCHHH
Q psy1315 136 DLPNA------------------------------IQIKQIEK-------LLGLYEL--NNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 136 Dl~~~------------------------------~~~~~~~~-------~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
|+..+ ..+....+ ++..... .....+...++.|..-+++..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 98531 00111110 1110000 012345566777999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy1315 177 GINELYQLILKKRKL 191 (202)
Q Consensus 177 l~~~l~~~~~~~~~~ 191 (202)
+|....+.+.+.+.+
T Consensus 360 VFnDcrdiIqr~hlr 374 (379)
T KOG0099|consen 360 VFNDCRDIIQRMHLR 374 (379)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988888776654
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.9e-08 Score=66.50 Aligned_cols=92 Identities=17% Similarity=0.078 Sum_probs=58.4
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
..+.++|++++|+|+.++..-. ...+...+.. ...+.|+++|+||+|+............+. .......+++
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~-----~~~~~~~~~i 75 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTR--CKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILS-----KEYPTIAFHA 75 (157)
T ss_pred HhhhhCCEEEEEEECCCCcccc--CHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHh-----cCCcEEEEEe
Confidence 3457899999999998763211 1122222222 123589999999999965432222222221 2222336889
Q ss_pred eeecCCCHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~ 186 (202)
||+.+.|++++++.+.+.+.
T Consensus 76 Sa~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred eccccccHHHHHHHHHHHHh
Confidence 99999999999999977654
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=77.79 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=49.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++++|+|-|+||||||||+|.+.....+++.+|+|.....+...+ .+.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~----~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD----GIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC----CeEEecCCCc
Confidence 345889999999999999999999999888888889999888876522 2889999993
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-07 Score=61.64 Aligned_cols=149 Identities=20% Similarity=0.276 Sum_probs=77.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcC-CC-----------------
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG-GQ----------------- 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-G~----------------- 78 (202)
+..++|.+-|+||||||||+.++...-...-...-|+-+..+.- .+...-|.++|+. |.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~---gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE---GGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec---CCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 46789999999999999999988643211111122333333332 3445556666665 20
Q ss_pred ----CCch----hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHh
Q psy1315 79 ----EKLR----PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL 150 (202)
Q Consensus 79 ----~~~~----~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~ 150 (202)
+.+. ......++.+|++| +|=- -.++.....+..........++|++.+..+-+-. + -++...
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEI--GpMElks~~f~~~ve~vl~~~kpliatlHrrsr~---P--~v~~ik 150 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEI--GPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH---P--LVQRIK 150 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecc--cchhhccHHHHHHHHHHhcCCCcEEEEEecccCC---h--HHHHhh
Confidence 0111 12233334456554 4433 2233333333333333233488988888766421 1 112211
Q ss_pred CchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 151 GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
....+.+| .+.+|-+.+++.+.+.+..
T Consensus 151 ------~~~~v~v~----lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 151 ------KLGGVYVF----LTPENRNRILNEILSVLKG 177 (179)
T ss_pred ------hcCCEEEE----EccchhhHHHHHHHHHhcc
Confidence 22334443 5677777999888887753
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.9e-08 Score=66.35 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=55.5
Q ss_pred CEEEEEEeCCCchhHHHHHHHHH-HHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELI-KTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~-~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
|++++|+|+.++.+.... ++. .... ..++|+++|+||+|+........+...+ .......++.+||+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~-----~~~~~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYL-----RHSYPTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHH-----HhhCCceEEEEeccCC
Confidence 789999999876544321 222 1222 2378999999999996542222221111 1122456899999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLIL 186 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~ 186 (202)
.|++++.+.+.+...
T Consensus 71 ~gi~~L~~~i~~~~~ 85 (155)
T cd01849 71 QGIEKKESAFTKQTN 85 (155)
T ss_pred cChhhHHHHHHHHhH
Confidence 999999999987754
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.3e-08 Score=68.50 Aligned_cols=144 Identities=14% Similarity=0.115 Sum_probs=79.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC----------ccccccceeeEeecccccccceEEEEEEcCCCCC---ch
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN----------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---LR 82 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---~~ 82 (202)
..=.++|.|+|.+|.|||||+|.++...... +..|.......-.+.. ++-..+++++||||.-+ ..
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE-~gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEE-KGVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeee-cceEEEEEEecCCCcccccCcc
Confidence 3457999999999999999999997654321 1112222111122211 33345678899999211 11
Q ss_pred -----------hhHHhhhc--------------CCCEEEEEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 83 -----------PLWKSYTR--------------CTDGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 83 -----------~~~~~~~~--------------~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
.+...|++ +.+++++.+..+. .++.-+.- .+..+.. -..+|-|.-|+|
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~-----vvNvvPVIakaD 195 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE-----VVNVVPVIAKAD 195 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh-----hheeeeeEeecc
Confidence 12222222 2589999998875 44444332 2333332 356777788999
Q ss_pred CCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
...-++.....+.+.... ..+++.+++--+
T Consensus 196 tlTleEr~~FkqrI~~el--~~~~i~vYPq~~ 225 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKEL--EKHGIDVYPQDS 225 (336)
T ss_pred cccHHHHHHHHHHHHHHH--HhcCcccccccc
Confidence 876555555444443221 234555555443
|
|
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-09 Score=77.78 Aligned_cols=165 Identities=16% Similarity=0.065 Sum_probs=99.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC---CC-----------------------CccccccceeeE-------eeccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ---YL-----------------------NTVPTIGFNCEK-------VKGQI 62 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~---~~-----------------------~~~~~~~~~~~~-------~~~~~ 62 (202)
.+..++|.-+|+...||||++.++.+-. |- +.-|.+++.... ..-..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 4568999999999999999999886532 10 000111100000 00000
Q ss_pred c--cc---cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 63 G--KC---KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 63 ~--~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
. .+ --..+.|+|+||+.-.-..+..-..--|++++++..++++........+..+.- ..-+.++++-||.|+
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei---M~LkhiiilQNKiDl 191 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI---MKLKHIIILQNKIDL 191 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH---hhhceEEEEechhhh
Confidence 0 00 013578999999875444433333446889999988765443333322222111 113568899999999
Q ss_pred CCCcCHH----HHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 138 PNAIQIK----QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 138 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..+.... .++.+++- ....+.|++++||.-..|++-+.++|+..+.
T Consensus 192 i~e~~A~eq~e~I~kFi~~---t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQG---TVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhHHHHHHHHHHHHHHHhc---cccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 8754332 34444431 1346789999999999999999999998763
|
|
| >KOG0448|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.3e-07 Score=73.84 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=83.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC--ccccc-------------------c----------------------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN--TVPTI-------------------G---------------------- 52 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~--~~~~~-------------------~---------------------- 52 (202)
...+.||+|.|..++||||++|+++..+..+ ..|+. +
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 4568899999999999999999998765321 11111 0
Q ss_pred ---ceeeEeecccccc--cceEEEEEEcCC---CCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCC
Q psy1315 53 ---FNCEKVKGQIGKC--KGINFLIWDVGG---QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF 124 (202)
Q Consensus 53 ---~~~~~~~~~~~~~--~~~~~~~~D~~G---~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~ 124 (202)
...-.+.++.... -.-.+.++|.|| .+...+-...+..++|++|+|..+.+.-.. ...+.+......
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~-sek~Ff~~vs~~---- 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTL-SEKQFFHKVSEE---- 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHH-HHHHHHHHhhcc----
Confidence 0000111100000 001467889999 345566677778889999999998753222 223344443332
Q ss_pred CCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhc--CcceEEEEEeeee
Q psy1315 125 NVPILILANKQDLPNAI--QIKQIEKLLGLYELN--NMHLYYIQATCAI 169 (202)
Q Consensus 125 ~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~ 169 (202)
+..+.++.||+|..... ..+.+...+..-..+ ......+|++||+
T Consensus 261 KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 261 KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 45566667889986542 222332221110111 1234568888855
|
|
| >KOG3859|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-08 Score=72.46 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=77.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCcccc---ccceeeEeecccc-cccceEEEEEEcCCC-------CCc-----
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPT---IGFNCEKVKGQIG-KCKGINFLIWDVGGQ-------EKL----- 81 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~D~~G~-------~~~----- 81 (202)
=.++|+.+|..|.|||||+..|++..+..+..+ .++.....++... .+-..++.++||.|. ..+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 468999999999999999999999888533221 2344444444441 233567899999981 111
Q ss_pred --hhhHHhhhc---------------CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH
Q psy1315 82 --RPLWKSYTR---------------CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK 144 (202)
Q Consensus 82 --~~~~~~~~~---------------~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~ 144 (202)
..+...|++ +.+++++.+.++. .++..+.-....-+.. ...+|-|+-|.|-.+.....
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Lds----kVNIIPvIAKaDtisK~eL~ 195 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLDS----KVNIIPVIAKADTISKEELK 195 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHhh----hhhhHHHHHHhhhhhHHHHH
Confidence 122333322 2589999998875 5666665444443333 56677777899876654333
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.9e-07 Score=65.90 Aligned_cols=88 Identities=18% Similarity=0.064 Sum_probs=54.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC--CCCCc----cccccceeeEeecccccccceEEEEEEcCCCCCc------hh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD--QYLNT----VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL------RP 83 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~ 83 (202)
..+..-|+|+|++++|||+|+|++++. .+... ..|.|+-....... .+....+.++||+|.... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~--~~~~~~v~~lDteG~~~~~~~~~~~~ 81 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK--LGKEHAVLLLDTEGTDGRERGEFEDD 81 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc--CCCcceEEEEecCCcCccccCchhhh
Confidence 345567899999999999999999998 55322 22233333322221 124567999999994322 22
Q ss_pred hHHhhhcC--CCEEEEEEeCCCch
Q psy1315 84 LWKSYTRC--TDGIIFVIDSTDVE 105 (202)
Q Consensus 84 ~~~~~~~~--~d~~ilv~d~~~~~ 105 (202)
.....+.. ++.+|+..+.....
T Consensus 82 ~~~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 82 ARLFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred hHHHHHHHHHhCEEEEeccCcccH
Confidence 22233333 78888888776433
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.4e-08 Score=73.75 Aligned_cols=83 Identities=22% Similarity=0.090 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC-C--Ccc-ccccceeeEeeccc------------ccccceEEEEEEcCCCC----
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY-L--NTV-PTIGFNCEKVKGQI------------GKCKGINFLIWDVGGQE---- 79 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~-~--~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~G~~---- 79 (202)
++++++|.|++|||||++.+.+... . .+. .|...+...+.++- .......+.+.|.||..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999998765 2 111 11222222222210 01122468899999933
Q ss_pred ---CchhhHHhhhcCCCEEEEEEeCC
Q psy1315 80 ---KLRPLWKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 80 ---~~~~~~~~~~~~~d~~ilv~d~~ 102 (202)
.........++++|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 23446667889999999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=68.08 Aligned_cols=84 Identities=21% Similarity=0.201 Sum_probs=58.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSYTRCT 92 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 92 (202)
-++.++|-|.+|||||+..+.+... +.....+.+..++.... .++.-++++.|.||.-+ -..+.....+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~-~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVI-RYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceE-eccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3899999999999999999886642 33333344444554433 56777899999999321 223444556778
Q ss_pred CEEEEEEeCCCch
Q psy1315 93 DGIIFVIDSTDVE 105 (202)
Q Consensus 93 d~~ilv~d~~~~~ 105 (202)
+++++|.|+..|-
T Consensus 138 nli~~vld~~kp~ 150 (358)
T KOG1487|consen 138 NLIFIVLDVLKPL 150 (358)
T ss_pred cEEEEEeeccCcc
Confidence 9999999987643
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.9e-08 Score=67.47 Aligned_cols=92 Identities=22% Similarity=0.139 Sum_probs=60.6
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
.......++++|.+++|+|+.++...... .+.... .+.|+++|.||+|+.+..........+. ....
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~------~~~~ 76 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE------SKGE 76 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH------hcCC
Confidence 34556778889999999999865432211 111211 2579999999999964322212112111 1234
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.++.+||+++.|++++.+.+.+.+.
T Consensus 77 ~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 77 KVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHH
Confidence 6789999999999999999988763
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.2e-08 Score=74.49 Aligned_cols=55 Identities=22% Similarity=0.120 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCcccccc-------ceeeEeecccccccceEEEEEEcCCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG-------FNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
.++|+|++|||||||+|+|++.....+....+ +|.....+... .. ..++||||..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-~g---~~liDTPG~~ 235 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-NG---GLLADTPGFN 235 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-CC---cEEEeCCCcc
Confidence 38999999999999999999876544444444 44444444331 12 2688999953
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.1e-08 Score=75.12 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=64.7
Q ss_pred CCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhc
Q psy1315 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELN 156 (202)
Q Consensus 78 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~ 156 (202)
.+.+..+...+...++++++|+|+.+... .|...+... ..+.|+++|+||+|+.... ....+...+.. ..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~--~~~~piilV~NK~DLl~k~~~~~~~~~~l~~--~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRF--VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKK--RA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHH--hCCCCEEEEEEchhhCCCCCCHHHHHHHHHH--HH
Confidence 45677888888899999999999975431 122222221 1267999999999996532 33333333211 11
Q ss_pred CcceE---EEEEeeeecCCCHHHHHHHHHHH
Q psy1315 157 NMHLY---YIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 157 ~~~~~---~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
...++ .++.+||+++.|++++++.+.+.
T Consensus 121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 12222 48899999999999999998654
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=72.92 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCcccccc-------ceeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG-------FNCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
.++|+|.+|||||||+|+|++.....+....+ +|.....+.+ ... ..++||||..++
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l-~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF-PHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe-cCC---CEEEECCCCCcc
Confidence 37999999999999999999875543322221 3333333333 122 248999996554
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-07 Score=70.43 Aligned_cols=94 Identities=26% Similarity=0.182 Sum_probs=63.4
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
.......++.+|++++|+|+..+.+... ..+..... ++|+++|.||+|+.+..........+. ..+.
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l~-----~kp~IiVlNK~DL~~~~~~~~~~~~~~------~~~~ 78 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIRG-----NKPRLIVLNKADLADPAVTKQWLKYFE------EKGI 78 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHHC-----CCCEEEEEEccccCCHHHHHHHHHHHH------HcCC
Confidence 3456677888999999999976543322 12222221 579999999999964322222222221 1235
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+++.+||+++.|++++.+.+.+.+.+.
T Consensus 79 ~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 79 KALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 789999999999999999998887654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-07 Score=73.54 Aligned_cols=71 Identities=15% Similarity=0.277 Sum_probs=48.5
Q ss_pred chHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC-----CCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 4 NSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ-----YLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++...+... ....++.++|.+|||||||+|+|+... ...+++.+|+|.....+...+ . ..++||||.
T Consensus 146 gI~eL~~~I~~~-~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~---~~l~DTPGi 220 (365)
T PRK13796 146 GIDELLEAIEKY-REGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-G---SFLYDTPGI 220 (365)
T ss_pred CHHHHHHHHHHh-cCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-C---cEEEECCCc
Confidence 344444444322 134589999999999999999998643 123566778888887776522 2 378999995
Q ss_pred C
Q psy1315 79 E 79 (202)
Q Consensus 79 ~ 79 (202)
.
T Consensus 221 ~ 221 (365)
T PRK13796 221 I 221 (365)
T ss_pred c
Confidence 3
|
|
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-08 Score=78.65 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=93.2
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCC-------CCc----------cccccceeeEeecccccccceEE
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQY-------LNT----------VPTIGFNCEKVKGQIGKCKGINF 70 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~-------~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 70 (202)
+.+...+...+.-+|.++.+-.+||||...++++-.. .+. ....|.+....-+.+ +.+.+.+
T Consensus 26 lhs~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~f-dwkg~ri 104 (753)
T KOG0464|consen 26 LHSIINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNF-DWKGHRI 104 (753)
T ss_pred ccCCCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeec-ccccceE
Confidence 3344555667788999999999999999999865311 011 222356666655555 7888999
Q ss_pred EEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 71 ~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
+++||||+..|.-....+++--|+++.|||.+-.-.-+.+..| . +....+.|-++..||+|....
T Consensus 105 nlidtpghvdf~leverclrvldgavav~dasagve~qtltvw-r----qadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 105 NLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVW-R----QADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred eeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeee-h----hccccCCchhhhhhhhhhhhh
Confidence 9999999999999999999999999999999843333333323 2 223448999999999998654
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.4e-07 Score=62.62 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=49.9
Q ss_pred HHhhhcCCCEEEEEEeCCCchhHH--HHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEE
Q psy1315 85 WKSYTRCTDGIIFVIDSTDVERME--EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY 162 (202)
Q Consensus 85 ~~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (202)
....++++|++++|+|+.++.+.. .+..++... ..++|+++|+||+|+..+.........+ ...+..
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~~~~~~~~~------~~~~~~ 73 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQRKAWAEYF------KKEGIV 73 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHHHHHHHHHH------HhcCCe
Confidence 345678899999999998765533 333333321 1378999999999996543322222322 122357
Q ss_pred EEEeeeecCCC
Q psy1315 163 IQATCAITGDG 173 (202)
Q Consensus 163 ~~~~Sa~~~~~ 173 (202)
++++||.++.+
T Consensus 74 ii~iSa~~~~~ 84 (141)
T cd01857 74 VVFFSALKENA 84 (141)
T ss_pred EEEEEecCCCc
Confidence 89999987763
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-07 Score=68.73 Aligned_cols=55 Identities=18% Similarity=0.079 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccc---c----ceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTI---G----FNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
.++++|.+|+|||||+|++.+.....+.... + +|.....+.. .+ -.++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~----~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG----GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC----cEEEeCCCccc
Confidence 7899999999999999999976543222111 1 3444433433 21 26899999543
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-07 Score=72.32 Aligned_cols=71 Identities=13% Similarity=0.302 Sum_probs=47.8
Q ss_pred chHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCC-----CCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 4 NSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQY-----LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++...+.... +..+++++|.+|||||||+|++++... ...++.+|+|.....+.. . . .+.++||||.
T Consensus 140 gv~eL~~~l~~~~-~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~-~--~~~l~DtPG~ 214 (360)
T TIGR03597 140 GIDELLDKIKKAR-NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-D-D--GHSLYDTPGI 214 (360)
T ss_pred CHHHHHHHHHHHh-CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-C-C--CCEEEECCCC
Confidence 3445544443321 236999999999999999999997532 344566677777666644 1 1 2579999995
Q ss_pred C
Q psy1315 79 E 79 (202)
Q Consensus 79 ~ 79 (202)
.
T Consensus 215 ~ 215 (360)
T TIGR03597 215 I 215 (360)
T ss_pred C
Confidence 4
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=77.92 Aligned_cols=113 Identities=15% Similarity=0.238 Sum_probs=68.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCc-----ccc--ccceeeEeecccccccceEEEEEEcCCC----C----Cchhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNT-----VPT--IGFNCEKVKGQIGKCKGINFLIWDVGGQ----E----KLRPL 84 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~----~~~~~ 84 (202)
.=.+|+|++|+||||+++.- +-.++-. ..+ .+-+ ..+.+.+ .. .-.++||+|. + .....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t-~~c~wwf-~~---~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGT-RNCDWWF-TD---EAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCC-cccceEe-cC---CEEEEcCCCccccCCCcccccHHH
Confidence 45799999999999999877 4444311 111 1111 1223322 11 3468999992 1 22334
Q ss_pred HHhhhc---------CCCEEEEEEeCCCchh---------HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 85 WKSYTR---------CTDGIIFVIDSTDVER---------MEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 85 ~~~~~~---------~~d~~ilv~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
|..++. -.+++|+++|+.+.-. -..++..+.++... ..-..||.||.||+|+..
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 555532 2799999999865311 12344455555544 344899999999999874
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-07 Score=74.46 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=80.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC----Ccccc-------------ccceeeEeecccccccceEEEEEEcCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL----NTVPT-------------IGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~----~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
.++.-+|.+.-+-.+||||+-++.++.... ....+ .|++....-... ..+.+.++++||||+
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~-~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYF-TWRDYRINIIDTPGH 114 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeee-eeccceeEEecCCCc
Confidence 456778999999999999999998754211 00111 123322211111 234678999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
-+|.-.....++--|++|++++.-..-. ......|..+.++ ++|-|..+||+|-.
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~ry----~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKRY----NVPRICFINKMDRM 169 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHhc----CCCeEEEEehhhhc
Confidence 9999888889999999999998763211 2223355555555 89999999999954
|
|
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-08 Score=74.38 Aligned_cols=157 Identities=19% Similarity=0.171 Sum_probs=99.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC----------------------------------ccccccceeeEeecc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN----------------------------------TVPTIGFNCEKVKGQ 61 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 61 (202)
.+.+++++|+|+..+||||+-..++.....- ...|.+......
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F--- 152 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF--- 152 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE---
Confidence 5789999999999999999987775431100 011111111111
Q ss_pred cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch---hHHHH--HHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 62 IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE---RMEEV--KIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 62 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~--~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
.....++++.|.||+..|-..+..-...+|..++|+++...+ .|+.- .+.-..+.. ...-...|+++||+|
T Consensus 153 --Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak--t~gv~~lVv~vNKMd 228 (501)
T KOG0459|consen 153 --ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK--TAGVKHLIVLINKMD 228 (501)
T ss_pred --EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH--hhccceEEEEEEecc
Confidence 334567999999999888877777777799999999985321 22211 111111111 122467888899999
Q ss_pred CCCCcCHH--------HHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 137 LPNAIQIK--------QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 137 l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
-+...+.. .+..++....+.......++++|..+|.++.+...
T Consensus 229 dPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 229 DPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 86543322 34445544444445677899999999999887653
|
|
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.9e-07 Score=68.56 Aligned_cols=158 Identities=19% Similarity=0.189 Sum_probs=88.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCC-----------------CCccccc-------cceeeEeecc------------
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQY-----------------LNTVPTI-------GFNCEKVKGQ------------ 61 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~-----------------~~~~~~~-------~~~~~~~~~~------------ 61 (202)
-+.+++++|...+|||||+-.|..... .+...|. |+...-..+.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 467999999999999999866644321 1111221 1111111110
Q ss_pred -cccccceEEEEEEcCCCCCchhhHHhhh--cCCCEEEEEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 62 -IGKCKGINFLIWDVGGQEKLRPLWKSYT--RCTDGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 62 -~~~~~~~~~~~~D~~G~~~~~~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
+.....-.++|+|..|+++|......-+ +-.|-..+++-+. ...-.+.. .+-..+. ..+|+.||++|+|.
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaN--aGIiGmTKEHLgLALa----L~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGAN--AGIIGMTKEHLGLALA----LHVPVFVVVTKIDM 285 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccc--ccceeccHHhhhhhhh----hcCcEEEEEEeecc
Confidence 0112233578999999988765432222 3367778887664 22222221 2211222 27899999999999
Q ss_pred CCCcCHHHH----HHHhCc--------------------hhhcCcceEEEEEeeeecCCCHHHHHHHH
Q psy1315 138 PNAIQIKQI----EKLLGL--------------------YELNNMHLYYIQATCAITGDGLHEGINEL 181 (202)
Q Consensus 138 ~~~~~~~~~----~~~~~~--------------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (202)
+.....++. ...++. ..+....-+|+|.+|..+|.|++.+...+
T Consensus 286 CPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 765433321 111111 01112345789999999999988665543
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.6e-06 Score=64.90 Aligned_cols=153 Identities=15% Similarity=0.181 Sum_probs=85.9
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-------------Ccc--cccc----------ceeeEeecc
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-------------NTV--PTIG----------FNCEKVKGQ 61 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-------------~~~--~~~~----------~~~~~~~~~ 61 (202)
.+.+..+.+....+-|+|||+..+|||||+.+|+..... +.- +..| +.-..+.+.
T Consensus 5 ~iykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~ 84 (492)
T PF09547_consen 5 DIYKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEIT 84 (492)
T ss_pred hHHHHHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEE
Confidence 356778888999999999999999999999999653210 000 1112 222333444
Q ss_pred cccccceEEEEEEcCC-------------CCC------chh---h-------HHhhhcCCC--EEEEEEeCC--C--chh
Q psy1315 62 IGKCKGINFLIWDVGG-------------QEK------LRP---L-------WKSYTRCTD--GIIFVIDST--D--VER 106 (202)
Q Consensus 62 ~~~~~~~~~~~~D~~G-------------~~~------~~~---~-------~~~~~~~~d--~~ilv~d~~--~--~~s 106 (202)
+.++-.+++.++|+.| .++ |.. + +...++.-. ++|+--|-+ + +++
T Consensus 85 l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~ 164 (492)
T PF09547_consen 85 LDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPREN 164 (492)
T ss_pred ecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHH
Confidence 4455667889999987 011 110 0 111122222 333333322 1 344
Q ss_pred HHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 107 MEEV-KIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 107 ~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+... .+.+.++... ++|+++++|-.+-.+. ....+...+ ....+.+++++++.
T Consensus 165 Y~eAEervI~ELk~i----gKPFvillNs~~P~s~-et~~L~~eL-----~ekY~vpVlpvnc~ 218 (492)
T PF09547_consen 165 YVEAEERVIEELKEI----GKPFVILLNSTKPYSE-ETQELAEEL-----EEKYDVPVLPVNCE 218 (492)
T ss_pred HHHHHHHHHHHHHHh----CCCEEEEEeCCCCCCH-HHHHHHHHH-----HHHhCCcEEEeehH
Confidence 4433 3444555444 8999999997764332 222333322 24567788888764
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-07 Score=73.43 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=49.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
++..+.|++||-|+|||||+||.|++.+...++.|+|-|...-++.+ . -.+.+.|+||
T Consensus 311 ~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s---~~v~LCDCPG 368 (562)
T KOG1424|consen 311 YKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-S---PSVCLCDCPG 368 (562)
T ss_pred CCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-C---CCceecCCCC
Confidence 44579999999999999999999999999999999998877777644 1 2467889999
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=66.15 Aligned_cols=101 Identities=25% Similarity=0.215 Sum_probs=66.0
Q ss_pred cCCCC-CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCch
Q psy1315 75 VGGQE-KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLY 153 (202)
Q Consensus 75 ~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~ 153 (202)
.||+. +........+..+|++|+|+|+.++.+... ..+..... ++|+++|.||+|+.+......+...+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence 35542 223455667788999999999976543322 12222222 589999999999964322222222221
Q ss_pred hhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 154 ELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
..+.+++.+||+++.|++++.+.+.+.+.+.
T Consensus 78 ----~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 78 ----EQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred ----HcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 1235688999999999999999998887654
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.2e-06 Score=65.84 Aligned_cols=145 Identities=23% Similarity=0.227 Sum_probs=76.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc----CCCC---Ccccc---------------ccceeeEeecc------------cc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF----DQYL---NTVPT---------------IGFNCEKVKGQ------------IG 63 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~----~~~~---~~~~~---------------~~~~~~~~~~~------------~~ 63 (202)
+...|+++|++|+||||++..+.. .... ....+ .++........ ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 467899999999999997776642 1110 00010 11211111100 00
Q ss_pred cccceEEEEEEcCCCCCchh-h---HHhh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 64 KCKGINFLIWDVGGQEKLRP-L---WKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~-~---~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
....+.+.++||+|...... + ...+ ..+.|..++|.|+............+... -.+--+|.||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCCCEEEEeeecC
Confidence 11235689999999543221 1 1111 12478999999986433222212222221 1234577899998
Q ss_pred CCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
...-..- -... ...+.|+.+++ +|++++++..
T Consensus 292 ~~~~G~~--ls~~------~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGGAA--LSIA------YVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCccHH--HHHH------HHHCcCEEEEe--CCCChhhccc
Confidence 6543321 1111 12356777776 7999988764
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-07 Score=62.53 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
-.++++|++|||||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999874
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.1e-06 Score=62.23 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=76.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC------C----CCcc------------ccccceeeEeecc------------cc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ------Y----LNTV------------PTIGFNCEKVKGQ------------IG 63 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~------~----~~~~------------~~~~~~~~~~~~~------------~~ 63 (202)
+.--|+++|++|+||||++..+.+.- . .+.. ...+..+...... ..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45688999999999999998884321 0 0000 0011111111000 00
Q ss_pred cccceEEEEEEcCCCCCchhh----HHhh--------hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEE
Q psy1315 64 KCKGINFLIWDVGGQEKLRPL----WKSY--------TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~----~~~~--------~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv 131 (202)
....+.+.++||||....... ...+ -...+..++|.|++.. ...+.+ ....... -.+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEE
Confidence 124567899999995432211 1111 1236788999999742 222221 1222111 1244688
Q ss_pred eeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 132 ANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 132 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
.||.|....-. .+-... ...+.|+.+++ +|++++++-.
T Consensus 266 lTKlD~t~~~G--~~l~~~------~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 266 LTKLDGTAKGG--VVFAIA------DELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred EECCCCCCCcc--HHHHHH------HHHCCCEEEEe--CCCChhhCcc
Confidence 99999554322 111111 12367888887 7888877754
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.8e-06 Score=66.14 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=58.5
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
...+.|.+++|++++.+-....+.+++...... +.|.++|+||+||.+... ....... .+ ..+++++.+|
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~----~i~piIVLNK~DL~~~~~-~~~~~~~---~~--~~g~~Vi~vS 178 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES----GAEPVIVLTKADLCEDAE-EKIAEVE---AL--APGVPVLAVS 178 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc----CCCEEEEEEChhcCCCHH-HHHHHHH---Hh--CCCCcEEEEE
Confidence 368899999999997433444445555444443 678899999999976411 1112211 11 3467899999
Q ss_pred eecCCCHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELY 182 (202)
Q Consensus 168 a~~~~~v~~l~~~l~ 182 (202)
++++.|++++.+++.
T Consensus 179 a~~g~gl~~L~~~L~ 193 (356)
T PRK01889 179 ALDGEGLDVLAAWLS 193 (356)
T ss_pred CCCCccHHHHHHHhh
Confidence 999999999998874
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-06 Score=65.80 Aligned_cols=57 Identities=23% Similarity=0.105 Sum_probs=35.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCcccccc-------ceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG-------FNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
-.++++|++|+|||||+|.|.+.....+....+ +|.....+.. ... ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~-~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL-PGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc-CCC---cEEEECCCcCc
Confidence 468999999999999999999765443322221 2322222222 111 36889999643
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-06 Score=65.20 Aligned_cols=58 Identities=21% Similarity=0.123 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCcccc-------ccceeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPT-------IGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
-.++++|++|+|||||+|.+++.....+... ..+|.....+.. ... ..++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~-~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPL-PGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEc-CCC---CEEEECCCCCcc
Confidence 5799999999999999999998654322111 113444433333 111 258999997554
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.4e-06 Score=61.42 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=54.0
Q ss_pred cceEEEEEEcCCCCCchhhHH-------hhhc-----CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEee
Q psy1315 66 KGINFLIWDVGGQEKLRPLWK-------SYTR-----CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~-------~~~~-----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~n 133 (202)
..+.+.++||||......... .... .+|..++|+|++.. .+.+. +........ .+--+|.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence 457889999999654322211 1111 38999999999732 22222 222222211 24568899
Q ss_pred CCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 134 KQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 134 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
|.|....... +.... ...+.|+.+++ +|++++++-.
T Consensus 226 KlDe~~~~G~--~l~~~------~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 226 KLDGTAKGGI--ILSIA------YELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred ccCCCCCccH--HHHHH------HHHCcCEEEEe--CCCChHhCcc
Confidence 9997654332 11111 11246777777 7888877654
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.34 E-value=5e-06 Score=57.30 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-++++|..|+|||||++++...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999998764
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=64.54 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=39.4
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC---Cccccc--c--ceeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL---NTVPTI--G--FNCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
+....+.. ..+++|++|||||||+|+|...... +.+... | +|+....++++ ... .++||||..++
T Consensus 158 l~~~l~~~-~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~-~gG---~iiDTPGf~~~ 229 (301)
T COG1162 158 LAELLAGK-ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP-GGG---WIIDTPGFRSL 229 (301)
T ss_pred HHHHhcCC-eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC-CCC---EEEeCCCCCcc
Confidence 33333434 7889999999999999999864322 122221 2 44445445442 222 47899996543
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-05 Score=62.47 Aligned_cols=115 Identities=19% Similarity=0.123 Sum_probs=62.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh------cCCC-----CCcc-----------ccccceeeEeecccc------------
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK------FDQY-----LNTV-----------PTIGFNCEKVKGQIG------------ 63 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~------~~~~-----~~~~-----------~~~~~~~~~~~~~~~------------ 63 (202)
++--|+++|.+||||||++..|. +.+. +.+. ...++.+........
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35678999999999999998884 2211 0111 111222222111000
Q ss_pred cccceEEEEEEcCCCCCchhh----HHhh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 64 KCKGINFLIWDVGGQEKLRPL----WKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
....+.+.++||+|....... ...+ ...++.+++|.|+.....-......+.. . -.+--+|.||.|.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~---~----~~~~g~IlTKlD~ 251 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD---S----VDVGSVIITKLDG 251 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh---c----cCCcEEEEECccC
Confidence 113578899999995433221 1111 2347899999998643222222222221 1 2356788999997
Q ss_pred CC
Q psy1315 138 PN 139 (202)
Q Consensus 138 ~~ 139 (202)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 54
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=57.09 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=71.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC----CC--C----C------------ccccccceeeEeeccc------------ccc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD----QY--L----N------------TVPTIGFNCEKVKGQI------------GKC 65 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~----~~--~----~------------~~~~~~~~~~~~~~~~------------~~~ 65 (202)
--|+++|++||||||.+.+|-.. .. . + +....++......... ...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 35899999999999999887421 10 0 0 0111233333222100 012
Q ss_pred cceEEEEEEcCCCCCchhh----HHhh--hcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPL----WKSY--TRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
+.+.+.++||+|....... +..+ ....+-+++|.+++... .+.......... .+-=++.||.|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~--------~~~~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF--------GIDGLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS--------STCEEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc--------cCceEEEEeecCC
Confidence 3467899999995433221 1111 12478999999987432 223222222111 1224668999975
Q ss_pred CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
.... .+-... ...+.|+-.+| +|++|+++
T Consensus 154 ~~~G--~~l~~~------~~~~~Pi~~it--~Gq~V~Dl 182 (196)
T PF00448_consen 154 ARLG--ALLSLA------YESGLPISYIT--TGQRVDDL 182 (196)
T ss_dssp STTH--HHHHHH------HHHTSEEEEEE--SSSSTTGE
T ss_pred CCcc--cceeHH------HHhCCCeEEEE--CCCChhcC
Confidence 5432 222211 12345666665 57777443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.5e-06 Score=65.52 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=48.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
.++.++++|+|-|++||||+||+|...+.....+++|+|..--.+.. .-.+.+.|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L----dk~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL----DKKIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec----cCCceeccCCc
Confidence 47899999999999999999999999988888888887776655533 22478999999
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.8e-05 Score=52.29 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=36.7
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
..+.+.++||+|... ....++..+|.+|++..++-.+...-.. ..+. ..--+++.||.|
T Consensus 90 ~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIK---AGIM------EIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhh---hhHh------hhcCEEEEeCCC
Confidence 356789999998542 2234778899999999886222222211 1222 233478889987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >KOG1534|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.9e-05 Score=54.95 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=61.4
Q ss_pred EEEEEEcCCCCCchh---hHHhhhcC------CCEEEEEEeCCC-chh---HHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 69 NFLIWDVGGQEKLRP---LWKSYTRC------TDGIIFVIDSTD-VER---MEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 69 ~~~~~D~~G~~~~~~---~~~~~~~~------~d~~ilv~d~~~-~~s---~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
.+.++|+||+-+..+ ..+.++++ .-+++++.|..= -++ +......+..+... ..|-|=|.+|+
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~l----E~P~INvlsKM 174 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISL----EVPHINVLSKM 174 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHh----cCcchhhhhHH
Confidence 467889999754322 22222221 235566665420 012 22222333333333 78999999999
Q ss_pred CCCCCcCHHHHHHHhCchhh--------------------------cCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 136 DLPNAIQIKQIEKLLGLYEL--------------------------NNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 136 Dl~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
|+.......+++.++.-... ....-..|++....+.+.++.++..|-.++.
T Consensus 175 DLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 175 DLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred HHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 99877555555554422111 1122345666666667777777776655543
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.6e-05 Score=59.42 Aligned_cols=144 Identities=12% Similarity=0.106 Sum_probs=73.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC-----CCC----ccc---------------cccceeeEeecc------cccccc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ-----YLN----TVP---------------TIGFNCEKVKGQ------IGKCKG 67 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~-----~~~----~~~---------------~~~~~~~~~~~~------~~~~~~ 67 (202)
..-.|+++|++|+||||++..|.+.. ... ..+ ..++......-. ......
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 45689999999999999999775421 000 000 112222111110 012234
Q ss_pred eEEEEEEcCCCCCch----hhHHhhh--cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc
Q psy1315 68 INFLIWDVGGQEKLR----PLWKSYT--RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~----~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 141 (202)
..+.++||+|..... .....+. ....-.++|+|++. ....+...+..... --+-=+|.||.|.....
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~--~~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~~~ 342 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS--SGDTLDEVISAYQG-----HGIHGCIITKVDEAASL 342 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCC--CHHHHHHHHHHhcC-----CCCCEEEEEeeeCCCCc
Confidence 567899999954321 2222222 22456789999872 22333322222211 12334678999976542
Q ss_pred CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH-HHHH
Q psy1315 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL-HEGI 178 (202)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~l~ 178 (202)
.. +.... ...+.|+.+++ +|.+| +++.
T Consensus 343 G~--~l~~~------~~~~lPi~yvt--~Gq~VP~Dl~ 370 (420)
T PRK14721 343 GI--ALDAV------IRRKLVLHYVT--NGQKVPEDLH 370 (420)
T ss_pred cH--HHHHH------HHhCCCEEEEE--CCCCchhhhh
Confidence 21 22211 12345666655 68887 4444
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-05 Score=62.49 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=56.6
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCc
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNM 158 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 158 (202)
.+...........+.+++|+|+.+... . |...+... ..+.|+++|+||+|+.... ....+...+.. ....
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~--s---~~~~L~~~--~~~kpviLViNK~DLl~~~~~~~~i~~~l~~--~~k~ 128 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNG--S---WIPGLHRF--VGNNPVLLVGNKADLLPKSVKKNKVKNWLRQ--EAKE 128 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCC--c---hhHHHHHH--hCCCCEEEEEEchhhCCCccCHHHHHHHHHH--HHHh
Confidence 344444444333449999999976321 1 12222221 1267999999999996532 23333332221 1111
Q ss_pred ce---EEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 159 HL---YYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 159 ~~---~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.+ ..++.+||+++.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 22 258899999999999999998664
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00017 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998653
|
|
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.9e-06 Score=61.27 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=44.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC-----CCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ-----YLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
...++.+.|+|-||+|||||+|++.... ...+.+..|+|......-. -.+.-.+.+.||||
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~ir-i~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIR-ISHRPPVYLIDTPG 205 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheE-eccCCceEEecCCC
Confidence 4578999999999999999999986532 2456677777776655211 13344588899999
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00012 Score=51.21 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=37.8
Q ss_pred ceEEEEEEcCCCCCchh----hHHhh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRP----LWKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~----~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.+.+.++|+||...... ....+ ....+.+++|++....... ..+........ + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 45678899999642211 11111 1248999999998643322 22333332221 2 35677799997654
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.8e-05 Score=59.40 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=72.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC----C--C----CCcc------------ccccceeeEeecc------c---cccc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD----Q--Y----LNTV------------PTIGFNCEKVKGQ------I---GKCK 66 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~----~--~----~~~~------------~~~~~~~~~~~~~------~---~~~~ 66 (202)
+.-.|+++|++||||||++..|... . . .+.. ...++......-. + ....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999988431 1 0 0000 0111221111100 0 0111
Q ss_pred ceEEEEEEcCCCCCchh----hHHhhh--cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRP----LWKSYT--RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~----~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.+.+.++||+|...... .+...+ ...+.+++|+|++-. ...+...+..... -..-=+|.||.|....
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 35789999999543211 122222 235788999987521 2222222222211 1233577899997654
Q ss_pred cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
... +-... ...+.|+.+++ +|++|.+=+.
T Consensus 393 ~G~--iLni~------~~~~lPIsyit--~GQ~VPeDI~ 421 (436)
T PRK11889 393 SGE--LLKIP------AVSSAPIVLMT--DGQDVKKNIH 421 (436)
T ss_pred ccH--HHHHH------HHHCcCEEEEe--CCCCCCcchh
Confidence 322 11111 12345665555 5777665443
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.1e-05 Score=59.15 Aligned_cols=124 Identities=14% Similarity=0.130 Sum_probs=63.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC---CC------Ccccc---------------ccceeeEeecc------ccccc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ---YL------NTVPT---------------IGFNCEKVKGQ------IGKCK 66 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~---~~------~~~~~---------------~~~~~~~~~~~------~~~~~ 66 (202)
.+.-.++++|++|+||||++.+|...- .. .+..+ .++........ .....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 345688999999999999999986421 00 00011 12222211110 01224
Q ss_pred ceEEEEEEcCCCCCchhh----HHhh--hcCCCEEEEEEeCCC-chhHHHHHHHHHHHHccCCCC-CCcEEEEeeCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPL----WKSY--TRCTDGIIFVIDSTD-VERMEEVKIELIKTIKNNDNF-NVPILILANKQDLP 138 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~-~~pvivv~nK~Dl~ 138 (202)
...+.++||+|....... .... .....-.++|++++. .+.+......+.......... .-+-=+|.||.|..
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 557899999995532221 1111 122456689999874 334444443343332110000 01234678999976
Q ss_pred CC
Q psy1315 139 NA 140 (202)
Q Consensus 139 ~~ 140 (202)
..
T Consensus 295 ~~ 296 (374)
T PRK14722 295 SN 296 (374)
T ss_pred CC
Confidence 54
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.1e-05 Score=52.09 Aligned_cols=77 Identities=27% Similarity=0.369 Sum_probs=42.8
Q ss_pred ceEEEEEEcCCCCCchhh------HHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPL------WKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.....++++.|......+ ... .-..+.+|.|+|+.+-.........+...+.. .-++|+||+|+.+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCCh
Confidence 345677888885443333 111 12368999999996643333333444444433 34788999999776
Q ss_pred cC-HHHHHHHh
Q psy1315 141 IQ-IKQIEKLL 150 (202)
Q Consensus 141 ~~-~~~~~~~~ 150 (202)
.. .....+.+
T Consensus 157 ~~~i~~~~~~i 167 (178)
T PF02492_consen 157 EQKIERVREMI 167 (178)
T ss_dssp H--HHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 53 24444433
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.91 E-value=2e-05 Score=43.75 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=26.2
Q ss_pred CCEEEEEEeCCCchhH--HHHHHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 92 TDGIIFVIDSTDVERM--EEVKIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
.+++++++|++..+.+ +.....+.++... ..++|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 6899999999986654 4444444454443 44899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.3e-05 Score=61.77 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=57.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc--hhhHHhhhcCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL--RPLWKSYTRCT 92 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~~~~~~~~ 92 (202)
..++.+.|+|+|-|++||||++|.|...+...+.|..|-|--=-.+ .-...+-++|+||...- .+.....+
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI----tLmkrIfLIDcPGvVyps~dset~ivL--- 375 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI----TLMKRIFLIDCPGVVYPSSDSETDIVL--- 375 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHH----HHHhceeEecCCCccCCCCCchHHHHh---
Confidence 3567999999999999999999999999988888888754321111 12235778899993321 23333333
Q ss_pred CEEEEEEeCCCchh
Q psy1315 93 DGIIFVIDSTDVER 106 (202)
Q Consensus 93 d~~ilv~d~~~~~s 106 (202)
-++|-|-.+.+++.
T Consensus 376 kGvVRVenv~~pe~ 389 (572)
T KOG2423|consen 376 KGVVRVENVKNPED 389 (572)
T ss_pred hceeeeeecCCHHH
Confidence 35566667776543
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00014 Score=45.36 Aligned_cols=97 Identities=18% Similarity=0.059 Sum_probs=54.9
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh-HHhhhcCCCEEEEEEe
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL-WKSYTRCTDGIIFVID 100 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~d~~ilv~d 100 (202)
+++.|.+|+||||+...+...-.. .+... ... + .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v--~~~---~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRV--LLI---D----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeE--EEE---C----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999888644211 11111 111 1 5788999986433221 2456677899999998
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEee
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILAN 133 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~n 133 (202)
.+. .+....................+..++.|
T Consensus 68 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 68 PEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred Cch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 874 33444333322222221223455555544
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=8e-05 Score=59.28 Aligned_cols=123 Identities=18% Similarity=0.226 Sum_probs=79.8
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC------------CCCc---cccccceeeEe--ec--cc--------
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ------------YLNT---VPTIGFNCEKV--KG--QI-------- 62 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~------------~~~~---~~~~~~~~~~~--~~--~~-------- 62 (202)
+.+..+..+.-++.++.+...|||||...|...- |.++ ....++|...- .. .+
T Consensus 10 r~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~ 89 (842)
T KOG0469|consen 10 RELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFI 89 (842)
T ss_pred HHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHh
Confidence 3455566778889999999999999999986431 1111 01112222221 11 11
Q ss_pred ---ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 63 ---GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 63 ---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
.+++..-++++|.||+..|++.....++-.|+.+.|+|.-+.-..+... .+.+.+.. .+.-+++.||.|.
T Consensus 90 k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTET-VLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 90 KQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred cCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHH-HHHHHHHh----hccceEEeehhhH
Confidence 1445667899999999999999999999999999999986543333322 22222222 4455677899995
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.3e-05 Score=58.96 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=60.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC-CCcccc-----------------------ccceeeEeeccc------ccccce
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPT-----------------------IGFNCEKVKGQI------GKCKGI 68 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~-----------------------~~~~~~~~~~~~------~~~~~~ 68 (202)
.=-|++||+.||||||-+..|-..-. ...... .++....+.-+. .....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 66799999999999998877743211 011111 122222221110 123456
Q ss_pred EEEEEEcCCCCCc----hhhHHhhhcC--CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 69 NFLIWDVGGQEKL----RPLWKSYTRC--TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 69 ~~~~~D~~G~~~~----~~~~~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.+.++||.|.... ...+..++.. ..-.-+|++++. ....+...+...... +. -=++.||.|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~----~i-~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLF----PI-DGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccC----Cc-ceeEEEcccccCc
Confidence 7899999995432 2334444433 345566677752 234444333332221 11 2366899997543
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=52.99 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=32.8
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
...+++|.+|.|+|.+- .++.... .+.++..... -.++.+|+||.|..
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~tae-ri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAE-RIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHH-HHHHHHHHhC--CceEEEEEeeccch
Confidence 44566899999999974 4555544 3444444321 38999999999855
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00014 Score=58.92 Aligned_cols=140 Identities=14% Similarity=0.195 Sum_probs=71.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC--------CCC-Cccc---------------cccceeeEeecc------ccccc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD--------QYL-NTVP---------------TIGFNCEKVKGQ------IGKCK 66 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~--------~~~-~~~~---------------~~~~~~~~~~~~------~~~~~ 66 (202)
...-.|+|+|++|+||||++..|... +.. .... ..++.+...... +....
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34568999999999999999888531 110 0000 111111111100 01123
Q ss_pred ceEEEEEEcCCCCCchhh----HH--hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPL----WK--SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~----~~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.+.+.|+||+|....... .. .... ....++|++... +...+...+..+.. ..+.-+|.||.|....
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~ 499 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGR 499 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence 567899999995432211 11 1111 345677777762 34443333333222 2356789999997543
Q ss_pred cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
. -.+...+ ...+.|+.+++ +|.+|
T Consensus 500 l--G~aLsv~------~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 500 F--GSALSVV------VDHQMPITWVT--DGQRV 523 (559)
T ss_pred h--hHHHHHH------HHhCCCEEEEe--CCCCc
Confidence 2 2222221 12345666665 57777
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00054 Score=52.56 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=57.5
Q ss_pred eEEEEEEcCCCCCchhhHHhhhc--------CCCEEEEEEeCCCchhHHH-HHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYTR--------CTDGIIFVIDSTDVERMEE-VKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~~--------~~d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
....++++.|-..-......+.. .-|++|-|+|+.+-..... ........+. ..-++|+||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCC
Confidence 55677888885544343333332 1488999999965332222 2222222222 2457899999999
Q ss_pred CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
+......++..+.. -.+..+++.++. .+....+++
T Consensus 159 ~~~~l~~l~~~l~~----lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAEELEALEARLRK----LNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHHHHHHHHHHHHH----hCCCCeEEEccc-cCCCHHHhh
Confidence 87655555554421 245677888776 444444443
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00014 Score=61.39 Aligned_cols=144 Identities=13% Similarity=0.086 Sum_probs=73.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC---------Ccccc---------------ccceeeEeecc------cccccceE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL---------NTVPT---------------IGFNCEKVKGQ------IGKCKGIN 69 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~---------~~~~~---------------~~~~~~~~~~~------~~~~~~~~ 69 (202)
--|+|+|+.|+||||++..|.+.... ....+ .++......-. +.....+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 46899999999999999988642100 00001 11111110000 01123456
Q ss_pred EEEEEcCCCCCc----hhhHHhh--hcCCCEEEEEEeCCC-chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 70 FLIWDVGGQEKL----RPLWKSY--TRCTDGIIFVIDSTD-VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 70 ~~~~D~~G~~~~----~~~~~~~--~~~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
+.++||+|.... ....... ....+-.++|.|.+. .+.+..+...+...... -+-=+|.||.|....-.
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~~~G 340 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEATHLG 340 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCCCcc
Confidence 899999993321 1111121 223567899999873 23344444333322110 13357789999765432
Q ss_pred HHHHHHHhCchhhcCcceEEEEEeeeecCCCH-HHHH
Q psy1315 143 IKQIEKLLGLYELNNMHLYYIQATCAITGDGL-HEGI 178 (202)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~l~ 178 (202)
. +-... ...+.|+.+++ +|++| +++.
T Consensus 341 ~--iL~i~------~~~~lPI~yit--~GQ~VPdDL~ 367 (767)
T PRK14723 341 P--ALDTV------IRHRLPVHYVS--TGQKVPEHLE 367 (767)
T ss_pred H--HHHHH------HHHCCCeEEEe--cCCCChhhcc
Confidence 1 11111 12355666665 68888 5554
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.8e-05 Score=54.05 Aligned_cols=52 Identities=33% Similarity=0.440 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (202)
||.+.|++|+|||||+++++..-.....+..|+.+....- ++..+-|.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~---~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRE---NGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEET---TSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccC---CCceEEEEEEEC
Confidence 6899999999999999998754321122333444433332 344455566665
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.7e-05 Score=65.23 Aligned_cols=112 Identities=21% Similarity=0.302 Sum_probs=65.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC--c-----cccccceeeEeecccccccceEEEEEEcCCC--------CCchhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN--T-----VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ--------EKLRPL 84 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~ 84 (202)
+=.+|||++|+||||++.. .+..|+- . ....| +..+...+ .-.-.++||.|. +.-...
T Consensus 126 PWy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g--T~~cdwwf----~deaVlIDtaGry~~q~s~~~~~~~~ 198 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG--TRNCDWWF----TDEAVLIDTAGRYITQDSADEVDRAE 198 (1188)
T ss_pred CceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC--CcccCccc----ccceEEEcCCcceecccCcchhhHHH
Confidence 3468999999999998753 3333321 1 11112 22222333 113568899982 123345
Q ss_pred HHhhh---------cCCCEEEEEEeCCCchh---------HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 85 WKSYT---------RCTDGIIFVIDSTDVER---------MEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 85 ~~~~~---------~~~d~~ilv~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
|..++ +-.++||+.+|+.+.-. ...++..+.++... ..-..||+|++||.|+..
T Consensus 199 W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 199 WLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 55441 33699999999865211 12233344444443 344899999999999865
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00031 Score=44.93 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=58.0
Q ss_pred EEEEcC-CCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 22 IVMLGL-DSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 22 i~v~G~-~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
|+++|. .|+||||+...|...-.... |...--+.... .....+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~--~~~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDL--QFGDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCC--CCCCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEec
Confidence 455555 68999998777643211110 11111111111 1112688999998643 334456788999999998
Q ss_pred CCCchhHHHHHHHHHHHHccCCCC-CCcEEEEeeC
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNF-NVPILILANK 134 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~-~~pvivv~nK 134 (202)
.+. .++.........+... ... ...+.+|+|+
T Consensus 74 ~~~-~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QDL-PSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred CCh-HHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 764 5566655555544443 222 4466677775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=54.51 Aligned_cols=94 Identities=22% Similarity=0.167 Sum_probs=63.1
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhH-HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERM-EEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
.+...-..+.|-+++++++.+|+-- .-+.+++...... ++..++|+||+|+.+...... +... ......++
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~----gi~pvIvlnK~DL~~~~~~~~-~~~~---~~y~~~gy 142 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG----GIEPVIVLNKIDLLDDEEAAV-KELL---REYEDIGY 142 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc----CCcEEEEEEccccCcchHHHH-HHHH---HHHHhCCe
Confidence 3344444557888888888776543 3444444444333 777888899999988765553 2211 11134689
Q ss_pred EEEEeeeecCCCHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
+++.+|+++++|+.++.+.+...
T Consensus 143 ~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 143 PVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred eEEEecCcCcccHHHHHHHhcCC
Confidence 99999999999999999887653
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00022 Score=45.32 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=49.8
Q ss_pred EEEEcC-CCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 22 IVMLGL-DSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 22 i~v~G~-~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
|+|.|. .|+||||+...+...-.. .+...-.+.. + ..+.+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~---d-~~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDL---D-PQYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeC---C-CCCCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 567774 699999988776532211 1212222222 1 115688999998643 333367777999999998
Q ss_pred CCCchhHHHHHHHHH
Q psy1315 101 STDVERMEEVKIELI 115 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~ 115 (202)
.+. .++....+.+.
T Consensus 71 ~~~-~s~~~~~~~~~ 84 (104)
T cd02042 71 PSP-LDLDGLEKLLE 84 (104)
T ss_pred CCH-HHHHHHHHHHH
Confidence 864 45555554443
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00031 Score=47.28 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=59.9
Q ss_pred EEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 24 MLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 24 v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
.-|.+|+|||++...+...-......+.-+..+. .. ..-.+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~-~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GL-ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CC-CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 3456899999987766432110001111111111 00 0111678999999743 3444577888999999999863
Q ss_pred chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 104 VERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 104 ~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
.++......+..+... ....++.+|.|+++.
T Consensus 79 -~s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 -TSITDAYALIKKLAKQ--LRVLNFRVVVNRAES 109 (139)
T ss_pred -hHHHHHHHHHHHHHHh--cCCCCEEEEEeCCCC
Confidence 4454444444333332 235678899999974
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=56.75 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=19.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
..-.++++|+.||||||++..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45568999999999999998885
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00021 Score=56.99 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=50.0
Q ss_pred ceEEEEEEcCCCCCch----hhHHhhhc---CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLR----PLWKSYTR---CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~----~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.+.+.++||+|..... .....++. ...-..+|++.+- ....+...+...... + +--+|.||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~----~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSRL----P-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCCC----C-CCEEEEecccccc
Confidence 4678999999954332 22333333 3456788888863 223333222222111 1 2357899999754
Q ss_pred CcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH-HHHH
Q psy1315 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL-HEGI 178 (202)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~l~ 178 (202)
... .+...+ ...+.|+.+++ +|.+| +++.
T Consensus 372 ~~G--~i~~~~------~~~~lPv~yit--~Gq~VpdDl~ 401 (424)
T PRK05703 372 SLG--SILSLL------IESGLPISYLT--NGQRVPDDIK 401 (424)
T ss_pred ccc--HHHHHH------HHHCCCEEEEe--CCCCChhhhh
Confidence 322 222221 12355666665 68886 4444
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00033 Score=56.47 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.--++++|+.|+||||++..|.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34699999999999999998864
|
|
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.3e-05 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
...-+++.|++|+|||||++.|+...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568999999999999999998765
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00057 Score=52.50 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=38.1
Q ss_pred eEEEEEEcCCCCCchhhHHhhhcC--------CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYTRC--------TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~~~--------~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
....++++.|...-......+... .+.+|.|+|+.+-.....-.......+ ...-+||+||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi------~~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV------GYADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH------HhCCEEEEeccccCC
Confidence 445778999976555554444221 488999999964221111011111111 223478899999986
Q ss_pred C
Q psy1315 140 A 140 (202)
Q Consensus 140 ~ 140 (202)
+
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 4
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.5e-05 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
|
... |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00023 Score=56.86 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
.++..|+++|.+|+||||++..+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 356789999999999999998874
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.5e-05 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+|+|+|++|||||||.+.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.3e-05 Score=53.14 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999866
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00048 Score=51.89 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=60.7
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC--------------
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-------------- 79 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-------------- 79 (202)
+....-..++++|++|.|||+++++|.....+...+ +...+.+..+.+|..+
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~--------------~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE--------------DAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC--------------CCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 345566889999999999999999998754321111 1112234444554321
Q ss_pred ----------CchhhHHhhhcCCCEEEEEEeCC-Cc--hhHHHHHHHHHHHHccCCCCCCcEEEEeeC
Q psy1315 80 ----------KLRPLWKSYTRCTDGIIFVIDST-DV--ERMEEVKIELIKTIKNNDNFNVPILILANK 134 (202)
Q Consensus 80 ----------~~~~~~~~~~~~~d~~ilv~d~~-~~--~s~~~~~~~~~~~~~~~~~~~~pvivv~nK 134 (202)
.........++....=++++|=- +. .+.......+..+..-.+.-.+|+|.||++
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 12223345567778888999832 21 122222222222222223448999999986
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00056 Score=45.45 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=29.0
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
++.+.+.+.....--|++.|+.|+|||||++.+...-
T Consensus 10 ~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 10 KFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3455566655666679999999999999999998653
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=6e-05 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+|+|+|.+|||||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00041 Score=55.29 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=18.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRL 39 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l 39 (202)
++.-++++|.+|+||||++..|
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakL 119 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKL 119 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 3568999999999999996655
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >KOG4273|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00079 Score=49.10 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=63.9
Q ss_pred ccEEEEEcCCCC--CHHHHHHHhhcCCCCCc-cccccceeeEeecccc-cccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 19 SVHIVMLGLDSA--GKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIG-KCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 19 ~~~i~v~G~~~~--GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
...++|+|..|+ ||-+|+.+|....+... .....+.+...++.-. -...+.+.+.-... +.+.. ......-.-+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicd-e~~lp-n~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICD-EKFLP-NAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccc-hhccC-Ccccccceee
Confidence 567899999998 99999999987776422 2222222222222110 01112222221111 11111 1122233579
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
++++||++....+..+..|+...--. ... -.++++||.|..
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdin--sfd-illcignkvdrv 122 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDIN--SFD-ILLCIGNKVDRV 122 (418)
T ss_pred EEEEEeccchhhhHHHHhhccccccc--cch-hheecccccccc
Confidence 99999999988899888887643211 112 346678999964
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00037 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..-++++|++||||||++.+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998863
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00036 Score=55.66 Aligned_cols=22 Identities=45% Similarity=0.632 Sum_probs=18.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRL 39 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l 39 (202)
.+.-|+++|.+|+||||++..|
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 4577899999999999966555
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00049 Score=51.52 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=72.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC----C-----C--C-----------ccccccceeeEeecc---------cccccc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ----Y-----L--N-----------TVPTIGFNCEKVKGQ---------IGKCKG 67 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~----~-----~--~-----------~~~~~~~~~~~~~~~---------~~~~~~ 67 (202)
.-+++++|++|+||||++..+...- . . . +....++......-. ......
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3699999999999999998775321 0 0 0 001112221111000 001124
Q ss_pred eEEEEEEcCCCCCchh----hHHhhh--cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc
Q psy1315 68 INFLIWDVGGQEKLRP----LWKSYT--RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~----~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 141 (202)
+.+.++||+|...... .+..++ ...+-.++|.|++. ....+..+...... -.+-=+|.||.|.....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~--~~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~~ 227 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM--KSKDMIEIITNFKD-----IHIDGIVFTKFDETASS 227 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc--CHHHHHHHHHHhCC-----CCCCEEEEEeecCCCCc
Confidence 6789999999553211 122222 23577899999862 22232222222211 22345778999976543
Q ss_pred CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
.. +-... ...+.|+.+++ +|+++.+=+
T Consensus 228 G~--~l~~~------~~~~~Pi~~it--~Gq~vp~di 254 (270)
T PRK06731 228 GE--LLKIP------AVSSAPIVLMT--DGQDVKKNI 254 (270)
T ss_pred cH--HHHHH------HHHCcCEEEEe--CCCCCCcch
Confidence 31 11111 12345666655 577766444
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00013 Score=51.65 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..=|+++|++|||||||+++|+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 345899999999999999999865
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.52 E-value=7.6e-05 Score=50.30 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+++|+||||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999744
|
... |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00012 Score=51.82 Aligned_cols=38 Identities=26% Similarity=0.126 Sum_probs=28.1
Q ss_pred hHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+...-+.......-.++++|++|+|||||++.+.+.
T Consensus 11 ~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 33444444444555678999999999999999998864
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00013 Score=41.48 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
..+|.|+.|+|||||+.++...-+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 489999999999999998865443
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=7.2e-05 Score=51.76 Aligned_cols=22 Identities=41% Similarity=0.419 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00012 Score=42.92 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998755
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >KOG0780|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00019 Score=55.35 Aligned_cols=103 Identities=21% Similarity=0.274 Sum_probs=56.8
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcC--------------CCCC--------ccccccceeeEe-----eccc----
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFD--------------QYLN--------TVPTIGFNCEKV-----KGQI---- 62 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~--------------~~~~--------~~~~~~~~~~~~-----~~~~---- 62 (202)
+...++--|.++|-.|+||||.+-.|... .|.. .....++.++.- ...+
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~eg 175 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEG 175 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHH
Confidence 34556677899999999999988777421 1100 000011111111 0000
Q ss_pred ---ccccceEEEEEEcCCCCCc-hhhHHh-----hhcCCCEEEEEEeCCCchhHHHHHHHHHH
Q psy1315 63 ---GKCKGINFLIWDVGGQEKL-RPLWKS-----YTRCTDGIIFVIDSTDVERMEEVKIELIK 116 (202)
Q Consensus 63 ---~~~~~~~~~~~D~~G~~~~-~~~~~~-----~~~~~d~~ilv~d~~~~~s~~~~~~~~~~ 116 (202)
-..+.+.+.|+||.|...- .++... -.-+.|.+|+|.|++-....+.....+..
T Consensus 176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 1345678999999994321 122111 12348999999999865554444444433
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00022 Score=47.90 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+++|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >KOG0446|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=7.1e-05 Score=62.52 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=59.4
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccc------------------------------------------
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTI------------------------------------------ 51 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~------------------------------------------ 51 (202)
...-....|+|+|+.++||||.++.+.+..|.+-+..+
T Consensus 24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 44567889999999999999999999886542111000
Q ss_pred ------------cceeeEeecccccccceEEEEEEcCCCC-------------CchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 52 ------------GFNCEKVKGQIGKCKGINFLIWDVGGQE-------------KLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 52 ------------~~~~~~~~~~~~~~~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
|+.-..+...+.......++++|.||.. ...++...|+...+.+|+.+...+
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an 180 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN 180 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh
Confidence 0000111122212334568899999922 355688899999999999998755
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00032 Score=52.66 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=28.7
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++.+-+.......-.|+|.|++||||||+++.++..
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhh
Confidence 344445555667889999999999999999999854
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00085 Score=52.85 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=73.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC----------CCC----Cc------------cccccceeeEeecc------cccc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD----------QYL----NT------------VPTIGFNCEKVKGQ------IGKC 65 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~----------~~~----~~------------~~~~~~~~~~~~~~------~~~~ 65 (202)
..-.|+++|++|+||||.+..+... ... ++ ....++........ ....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3467999999999999999887531 000 00 01112222211110 0122
Q ss_pred cceEEEEEEcCCCCCch----hhHHhhhcC---CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLR----PLWKSYTRC---TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~----~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
..+.+.++||+|..... .....++.. ..-.++|.|++.. ...+...+..... --+-=+|.||.|..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCC
Confidence 45678999999944321 122223332 2368899999743 3333333333221 12345778999975
Q ss_pred CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH-HHHH
Q psy1315 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL-HEGI 178 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~l~ 178 (202)
..-.. +-... ...+.|+.+++ +|++| +++.
T Consensus 326 ~~~G~--~l~~~------~~~~~Pi~yit--~Gq~vPeDl~ 356 (388)
T PRK12723 326 TCVGN--LISLI------YEMRKEVSYVT--DGQIVPHNIS 356 (388)
T ss_pred CcchH--HHHHH------HHHCCCEEEEe--CCCCChhhhh
Confidence 44221 11111 12345555555 58888 4444
|
|
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00028 Score=50.82 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...+..-|+|+|++|||||||++.|...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456677889999999999999999754
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0016 Score=50.54 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCCCchhhHHhhh-------cCCCEEEEEEeCCCchh--H-------H-------------HHHHHHHHHH
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYT-------RCTDGIIFVIDSTDVER--M-------E-------------EVKIELIKTI 118 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~-------~~~d~~ilv~d~~~~~s--~-------~-------------~~~~~~~~~~ 118 (202)
....++++.|......+...+. -.-|++|.|+|+.+-.. + . .+...+...+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4567889999665555444431 12588999999864211 0 0 0111112222
Q ss_pred ccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 119 KNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 119 ~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
...-+||+||+|+.+......+.+.+.. . .....++++++ ........++.
T Consensus 173 ------~~AD~IvlnK~Dl~~~~~l~~~~~~l~~--~-~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 173 ------ACADLVILNKADLLDAAGLARVRAEIAA--E-LPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred ------HhCCEEEEeccccCCHHHHHHHHHHHHH--h-CCCCCEEEEcc-cCCCCHHHHhC
Confidence 2345788999999887666665555421 1 11123455543 23344555544
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00013 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-|+++|++|||||||++.+.+-.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3358999999999999999887643
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00089 Score=44.77 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
....+++.|++|+|||+|++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00025 Score=52.21 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=27.2
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++++..+...+...+|+++|+|||||+|+..++..
T Consensus 19 ~~~~~~~~~~~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 19 ELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred HHHHHHhhccccCceEEEECCCCCCHHHHHHHHHH
Confidence 34555544455578999999999999999998864
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00016 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++|+|+.|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 4478999999999999999888764
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00015 Score=51.78 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=22.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
..+.=.++++|++|||||||++.+-+-.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 3445578999999999999999886544
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00021 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00019 Score=51.93 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=-++++|++|||||||++.+-+-.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44468999999999999999886543
|
|
| >PRK10646 ADP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0027 Score=43.20 Aligned_cols=37 Identities=19% Similarity=0.067 Sum_probs=28.3
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
++.+.++...+..--|++-|+-|+|||||++.+...-
T Consensus 16 ~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 16 DLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3455555555555679999999999999999997653
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00026 Score=47.00 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
-.++++|++|+|||++++.+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4789999999999999999987654
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00023 Score=46.84 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998755
|
... |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00025 Score=49.92 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+|+++|.|||||||+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998654
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00025 Score=51.46 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998853
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0018 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHhhcCC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~ 43 (202)
|+|+|++||||||+++.+.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887653
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00027 Score=46.76 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHhhcCC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~ 43 (202)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998653
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00095 Score=52.48 Aligned_cols=115 Identities=18% Similarity=0.177 Sum_probs=62.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc----CCC-------CCcccc-----------ccceeeEeeccc-----------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF----DQY-------LNTVPT-----------IGFNCEKVKGQI----------- 62 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~----~~~-------~~~~~~-----------~~~~~~~~~~~~----------- 62 (202)
.+++..|.++|-.|+||||.+-.|-. ... +.+.|. .++.++......
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 44577899999999999998877632 110 011111 122222211000
Q ss_pred -ccccceEEEEEEcCCCCCchhhHH------hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 63 -GKCKGINFLIWDVGGQEKLRPLWK------SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 63 -~~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
-....+.+.|+||+|........- .-.-++|-+++|+|+.-...-.+....+.+.+.. -=||+||.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKl 249 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKL 249 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEcc
Confidence 022345789999999543322111 1234589999999997554444434333333222 12556888
Q ss_pred CC
Q psy1315 136 DL 137 (202)
Q Consensus 136 Dl 137 (202)
|-
T Consensus 250 DG 251 (451)
T COG0541 250 DG 251 (451)
T ss_pred cC
Confidence 74
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00032 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++..-|+++|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45677999999999999999999753
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00031 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.++++|++|||||||++.+.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997653
|
|
| >KOG1533|consensus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=47.81 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=37.4
Q ss_pred cceEEEEEEcCCCCCchh------hHHhhhcCCCEEE---EEEeC---CCchhHHHHH-HHHHHHHccCCCCCCcEEEEe
Q psy1315 66 KGINFLIWDVGGQEKLRP------LWKSYTRCTDGII---FVIDS---TDVERMEEVK-IELIKTIKNNDNFNVPILILA 132 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~------~~~~~~~~~d~~i---lv~d~---~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~ 132 (202)
......++|+|||-++-. .....+++.+.=+ -.+|. ++|..|-... .-+..++.- ..|-|=|.
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~m----elphVNvl 170 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHM----ELPHVNVL 170 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhh----cccchhhh
Confidence 345678899999754321 1222233344433 34442 3455554322 222333332 67888889
Q ss_pred eCCCCCC
Q psy1315 133 NKQDLPN 139 (202)
Q Consensus 133 nK~Dl~~ 139 (202)
.|+|+..
T Consensus 171 SK~Dl~~ 177 (290)
T KOG1533|consen 171 SKADLLK 177 (290)
T ss_pred hHhHHHH
Confidence 9999854
|
|
| >PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2 | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00028 Score=49.79 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+++|++|||||||.++|+..
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
|
7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A .... |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00056 Score=50.14 Aligned_cols=33 Identities=27% Similarity=0.157 Sum_probs=26.7
Q ss_pred HhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 11 NLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+......+.+-|++.|++|+|||||++.+.+..
T Consensus 25 ~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 25 ALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 333445678999999999999999999987653
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00031 Score=51.48 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=24.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.+..++++|+|++|||||+|+..++...
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4567899999999999999999988653
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00036 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+..++|+|+|+|||||||+.+.|..
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998854
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00034 Score=50.45 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+...|++.|++|||||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998754
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00058 Score=49.33 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=24.1
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+......+..-++++.|+||+|||||.+-+.+..
T Consensus 41 ~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 41 RAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp HHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 3334455667799999999999999999876543
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0007 Score=51.70 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=25.1
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
........+|++.|..|||||||+|.|..--
T Consensus 167 ~~av~~r~NILisGGTGSGKTTlLNal~~~i 197 (355)
T COG4962 167 RRAVGIRCNILISGGTGSGKTTLLNALSGFI 197 (355)
T ss_pred HHHHhhceeEEEeCCCCCCHHHHHHHHHhcC
Confidence 3334445899999999999999999998653
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00035 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~ 40 (202)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4568999999999999999876
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00034 Score=49.59 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++|+++|+|||||||+..++...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00031 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~ 40 (202)
.-|+++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999987
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00033 Score=49.22 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998664
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0004 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+-|++.|.+|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467888999999999999999754
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00043 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.-+++++|.+|+|||||++.+.+...
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc
Confidence 45899999999999999999987543
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00033 Score=50.10 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|++.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00035 Score=51.59 Aligned_cols=28 Identities=29% Similarity=0.143 Sum_probs=22.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..++.=-++++|+.|||||||++.+.+-
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3444556899999999999999999763
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00041 Score=53.28 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=24.9
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.......-+|++.|++|+|||||++.+...
T Consensus 141 L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 141 IIAAVRAHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3333445678999999999999999999864
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00038 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-|+++|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00038 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.|.|+|+.|+|||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0004 Score=53.30 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
....+|+|.|++|||||||++.|+..
T Consensus 142 ~~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 142 DSRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999864
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00042 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988644
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00043 Score=48.23 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+|+++|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988643
|
|
| >smart00072 GuKc Guanylate kinase homologues | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00064 Score=48.04 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
-|+++|++||||+||++.|....
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999998763
|
Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. |
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00047 Score=48.71 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+|+++|+|||||||+...+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0018 Score=44.34 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
++|.|++|+|||+|+..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998654
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK07667 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.001 Score=47.43 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=29.9
Q ss_pred hHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..++...+.......+-|++-|.+|||||||.+.|...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34555666666667789999999999999999988653
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0088 Score=41.74 Aligned_cols=66 Identities=6% Similarity=-0.059 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 69 ~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.+.++|+|+.... .....+..+|.+|++.+.+. .++......+..+... ......+|.|+.|....
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCccccc
Confidence 6889999975432 34455678999999998864 4455554444433332 13356788999986543
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00082 Score=44.04 Aligned_cols=35 Identities=26% Similarity=0.107 Sum_probs=25.7
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.+.+....+..--|++-|+-|+|||||++.+...-
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 33444444556679999999999999999997543
|
They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00051 Score=48.21 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=23.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
++.-.++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345579999999999999999988764
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0025 Score=44.57 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=31.3
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHH
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEK 148 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 148 (202)
|++++|+|+.++.+-.. ..+...... ...++|+++|+||+|+.+......+..
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l-~~~~kp~IlVlNK~DL~~~~~l~~~~~ 53 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQ-AGGNKKLVLVLNKIDLVPKENVEKWLK 53 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHh-ccCCCCEEEEEehhhcCCHHHHHHHHH
Confidence 78999999987532211 112222110 122689999999999976544333333
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0025 Score=48.53 Aligned_cols=143 Identities=18% Similarity=0.201 Sum_probs=75.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC----CCC------C---------------------cccccc-----ceeeEee
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD----QYL------N---------------------TVPTIG-----FNCEKVK 59 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~----~~~------~---------------------~~~~~~-----~~~~~~~ 59 (202)
..+++-|+|+|-.|+||||-+..|... .+. + ..+..| +-++.+.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 346889999999999999988777321 100 0 000011 2222222
Q ss_pred cccccccceEEEEEEcCCCCCchhh-------HHhhhcCC-----CEEEEEEeCCCc-hhHHHHHHHHHHHHccCCCCCC
Q psy1315 60 GQIGKCKGINFLIWDVGGQEKLRPL-------WKSYTRCT-----DGIIFVIDSTDV-ERMEEVKIELIKTIKNNDNFNV 126 (202)
Q Consensus 60 ~~~~~~~~~~~~~~D~~G~~~~~~~-------~~~~~~~~-----d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~ 126 (202)
.- ....+.+.++||+|.-..... ....+... +-++++.|++-. +.+.... .+......
T Consensus 216 ~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk-~F~eav~l------ 286 (340)
T COG0552 216 AA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAK-IFNEAVGL------ 286 (340)
T ss_pred HH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHH-HHHHhcCC------
Confidence 21 235577999999994332222 12222333 448888898744 3444433 44444332
Q ss_pred cEEEEeeCCCCCCCcCH-HHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 127 PILILANKQDLPNAIQI-KQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 127 pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
-=+++||+|-...-.. -.+. ...+.|+.++- -|+++++|..
T Consensus 287 -~GiIlTKlDgtAKGG~il~I~---------~~l~~PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 287 -DGIILTKLDGTAKGGIILSIA---------YELGIPIKFIG--VGEGYDDLRP 328 (340)
T ss_pred -ceEEEEecccCCCcceeeeHH---------HHhCCCEEEEe--CCCChhhccc
Confidence 2367899993221110 0111 22355666655 3777887764
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00056 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+|+++|.+||||||+.+.+..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
|
|
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00044 Score=50.32 Aligned_cols=21 Identities=29% Similarity=0.214 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|++.|++|||||||++.+.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998754
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00056 Score=49.66 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=23.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
....=.++++|+.|+|||||++.+.+-.
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3445578999999999999999998764
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 202 | ||||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 2e-43 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 3e-43 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 4e-43 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 1e-42 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 3e-42 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 4e-42 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 5e-42 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 1e-40 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 1e-40 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 1e-40 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 3e-40 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 3e-40 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 5e-40 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 8e-40 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 1e-39 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 1e-39 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 1e-39 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 1e-39 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 2e-39 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 7e-39 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 7e-39 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 9e-39 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 1e-37 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 1e-31 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 8e-31 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 1e-30 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 3e-30 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 3e-30 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 4e-30 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 4e-29 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 4e-29 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 4e-29 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 4e-28 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 4e-28 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 1e-27 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 4e-27 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 4e-27 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 8e-27 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 4e-26 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 5e-26 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 3e-25 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 1e-23 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 2e-23 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 4e-22 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 8e-22 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 1e-21 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 2e-21 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 2e-20 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 1e-19 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 6e-19 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 7e-19 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 5e-18 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 1e-17 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 5e-11 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 5e-11 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 3e-10 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 8e-10 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 1e-09 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 1e-09 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 1e-09 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 1e-09 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 1e-09 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 2e-09 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 2e-09 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 3e-09 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 3e-09 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 3e-09 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 3e-09 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 3e-09 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 4e-09 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 4e-09 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 4e-09 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 4e-09 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 4e-09 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 4e-09 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 4e-09 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 4e-09 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 4e-09 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 5e-09 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 5e-09 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 7e-09 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 1e-08 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 1e-08 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 2e-08 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 2e-08 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 2e-08 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 2e-08 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 3e-08 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 4e-08 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 5e-08 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 7e-08 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 8e-08 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 8e-08 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 9e-08 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 2e-07 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 2e-07 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 2e-07 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 2e-07 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 3e-07 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 4e-07 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 4e-07 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 4e-07 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 4e-07 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 5e-07 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 6e-07 | ||
| 3t12_A | 198 | Mgla In Complex With Mglb In Transition State Lengt | 9e-07 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 1e-06 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 1e-06 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 1e-06 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 1e-06 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 1e-06 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 2e-06 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 2e-06 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 2e-06 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 2e-06 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 2e-06 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 2e-06 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 3e-06 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 3e-06 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 3e-06 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 3e-06 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 5e-06 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 6e-06 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 6e-06 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 6e-06 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 7e-06 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 7e-06 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 8e-06 | ||
| 3t1t_A | 198 | Mgla Bound To Gdp In P1 Tetrameric Arrangement Leng | 8e-06 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 1e-05 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 1e-05 | ||
| 1lb1_B | 192 | Crystal Structure Of The Dbl And Pleckstrin Homolog | 1e-05 | ||
| 4dso_A | 189 | Small-Molecule Ligands Bind To A Distinct Pocket In | 1e-05 | ||
| 2ery_A | 172 | The Crystal Structure Of The Ras Related Protein Rr | 1e-05 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 1e-05 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 1e-05 | ||
| 3lw8_A | 185 | Shigella Ipgb2 In Complex With Human Rhoa, Gdp And | 1e-05 | ||
| 3tvd_A | 193 | Crystal Structure Of Mouse Rhoa-Gtp Complex Length | 1e-05 | ||
| 4f38_A | 195 | Crystal Structure Of Geranylgeranylated Rhoa In Com | 2e-05 | ||
| 1x86_B | 196 | Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A | 2e-05 | ||
| 2fv8_A | 207 | The Crystal Structure Of Rhob In The Gdp-Bound Stat | 2e-05 | ||
| 2fh5_B | 214 | The Structure Of The Mammalian Srp Receptor Length | 2e-05 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 2e-05 | ||
| 4epr_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 2e-05 | ||
| 3kz1_E | 182 | Crystal Structure Of The Complex Of Pdz-Rhogef DhPH | 3e-05 | ||
| 1s1c_A | 183 | Crystal Structure Of The Complex Between The Human | 4e-05 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 4e-05 | ||
| 1cc0_A | 190 | Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le | 4e-05 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 4e-05 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 5e-05 | ||
| 1ow3_B | 193 | Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With | 5e-05 | ||
| 2gco_A | 201 | Crystal Structure Of The Human Rhoc-gppnhp Complex | 5e-05 | ||
| 1cxz_A | 182 | Crystal Structure Of Human Rhoa Complexed With The | 5e-05 | ||
| 1s8f_A | 177 | Crystal Structure Of Rab9 Complexed To Gdp Reveals | 6e-05 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 6e-05 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 7e-05 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 7e-05 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 8e-05 | ||
| 2gcn_A | 201 | Crystal Structure Of The Human Rhoc-Gdp Complex Len | 8e-05 | ||
| 3msx_A | 180 | Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With | 1e-04 | ||
| 2fn4_A | 181 | The Crystal Structure Of Human Ras-Related Protein, | 1e-04 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 1e-04 | ||
| 1xcg_B | 178 | Crystal Structure Of Human Rhoa In Complex With DhP | 1e-04 | ||
| 1tx4_B | 177 | RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | 1e-04 | ||
| 2a78_A | 187 | Crystal Structure Of The C3bot-Rala Complex Reveals | 2e-04 | ||
| 1uad_A | 175 | Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi | 2e-04 | ||
| 1u8y_A | 168 | Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal | 2e-04 | ||
| 2bov_A | 206 | Molecular Recognition Of An Adp-Ribosylating Clostr | 2e-04 | ||
| 1dpf_A | 180 | Crystal Structure Of A Mg-Free Form Of Rhoa Complex | 3e-04 | ||
| 4epx_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 3e-04 | ||
| 4ept_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 3e-04 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 3e-04 | ||
| 3kko_A | 183 | Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX | 3e-04 | ||
| 4q21_A | 189 | Molecular Switch For Signal Transduction: Structura | 3e-04 | ||
| 1z2c_A | 193 | Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With | 3e-04 | ||
| 3pir_A | 183 | Crystal Structure Of M-Rasd41e In Complex With Gppn | 3e-04 | ||
| 3kkp_A | 183 | Crystal Structure Of M-Ras P40d In Complex With Gpp | 3e-04 | ||
| 1z0k_A | 172 | Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W | 4e-04 | ||
| 3con_A | 190 | Crystal Structure Of The Human Nras Gtpase Bound Wi | 4e-04 | ||
| 1x1r_A | 178 | Crystal Structure Of M-Ras In Complex With Gdp Leng | 4e-04 | ||
| 1agp_A | 166 | Three-Dimensional Structures And Properties Of A Tr | 6e-04 | ||
| 1lf0_A | 166 | Crystal Structure Of Rasa59g In The Gtp-Bound Form | 7e-04 | ||
| 3llu_A | 196 | Crystal Structure Of The Nucleotide-Binding Domain | 7e-04 |
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State Length = 198 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement Length = 198 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192 | Back alignment and structure |
|
| >pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189 | Back alignment and structure |
|
| >pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185 | Back alignment and structure |
|
| >pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193 | Back alignment and structure |
|
| >pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195 | Back alignment and structure |
|
| >pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196 | Back alignment and structure |
|
| >pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207 | Back alignment and structure |
|
| >pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182 | Back alignment and structure |
|
| >pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193 | Back alignment and structure |
|
| >pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201 | Back alignment and structure |
|
| >pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182 | Back alignment and structure |
|
| >pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201 | Back alignment and structure |
|
| >pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180 | Back alignment and structure |
|
| >pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178 | Back alignment and structure |
|
| >pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | Back alignment and structure |
|
| >pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187 | Back alignment and structure |
|
| >pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175 | Back alignment and structure |
|
| >pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168 | Back alignment and structure |
|
| >pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180 | Back alignment and structure |
|
| >pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183 | Back alignment and structure |
|
| >pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189 | Back alignment and structure |
|
| >pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193 | Back alignment and structure |
|
| >pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183 | Back alignment and structure |
|
| >pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183 | Back alignment and structure |
|
| >pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172 | Back alignment and structure |
|
| >pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190 | Back alignment and structure |
|
| >pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166 | Back alignment and structure |
|
| >pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras- Related Gtp-Binding Protein C Length = 196 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 8e-81
Identities = 69/184 (37%), Positives = 110/184 (59%), Gaps = 6/184 (3%)
Query: 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCK 66
+ L+++ V I++LGLD+AGKTT L +L + + PT GFN + V+ +
Sbjct: 4 SILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-----SQ 58
Query: 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
G +WD+GGQ K+RP W+SY TD +I+VIDS D +R EE EL + ++ V
Sbjct: 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV 118
Query: 127 PILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186
P+LI ANKQDL A +I + L L+ + + ++ IQ+ A+TG+G+ +G+N + + +
Sbjct: 119 PVLIFANKQDLLTAAPASEIAEGLNLHTIRD-RVWQIQSCSALTGEGVQDGMNWVCKNVN 177
Query: 187 KKRK 190
K+K
Sbjct: 178 AKKK 181
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 8e-80
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 11/176 (6%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
+ ++ LGLD+AGKTT L+ LK D+ PT E++ I F +D+
Sbjct: 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELA-----IGNIKFTTFDL 74
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GG + R LWK Y +GI+F++D+ D ER +E ++EL + +VP +IL NK
Sbjct: 75 GGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKI 134
Query: 136 DLPNAIQIKQIEKLLGLYELNNM------HLYYIQATCAITGDGLHEGINELYQLI 185
D PNA+ ++ LGL + + +G E L Q I
Sbjct: 135 DAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 2e-79
Identities = 80/170 (47%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+ K I+F +WDVGGQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQD 55
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
K+RPLW+ Y + T G+IFV+DS D ER+ E + EL++ + ++ + +L+ ANKQDLPN
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
A+ +I LGL+ L + +YIQATCA +GDGL+EG++ L + ++
Sbjct: 116 AMNAAEITDKLGLHSLRH-RNWYIQATCATSGDGLYEGLDWLSNQLRNQK 164
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 3e-79
Identities = 45/171 (26%), Positives = 86/171 (50%), Gaps = 7/171 (4%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ + ++GL +GKTT + + Q+ + +PT+GFN K+ + +WD+GGQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT-----KGNVTIKLWDIGGQ 77
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
+ R +W+ Y R I++++D+ D E++E K EL + +P+L+L NK+DLP
Sbjct: 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
A+ K++ + + L + + + D + + L Q +R
Sbjct: 138 GALDEKELIEKMNLSAIQD-REICCYSISCKEKDNIDITLQWLIQHSKSRR 187
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 7e-79
Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
+ + I++LGLD AGKTT LYRL+ + + T+PTIGFN E V K + F +WD+
Sbjct: 4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVT-----YKNLKFQVWDL 58
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GG +RP W+ Y TD +I+V+DS D +R+ K EL+ ++ + +++ ANKQ
Sbjct: 59 GGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQ 118
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
D+ A+ ++ LGL L + + I T A G GL E + L + + ++
Sbjct: 119 DMEQAMTSSEMANSLGLPALKD-RKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 171
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 7e-79
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 9/195 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MG + ++++GLD+AGKTT LY+ ++ ++T PTIG N E++
Sbjct: 1 MGILFTRIWRLF---NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV- 56
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
FL+WD+GGQE LR W +Y T+ +I V+DSTD ER+ + EL K + +
Sbjct: 57 ----INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 112
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
D +LI ANKQD+ + + +I + L L + + H ++IQA CA+TG+GL +G+
Sbjct: 113 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD-HQWHIQACCALTGEGLCQGLEW 171
Query: 181 LYQLILKKRKLQKTN 195
+ + + + +
Sbjct: 172 MMSRLKIRLEHHHHH 186
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 1e-78
Identities = 68/187 (36%), Positives = 107/187 (57%), Gaps = 8/187 (4%)
Query: 1 MGKNSAAFFE--NLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKV 58
MG + L GS ++++GLD+AGKTT LY+ ++ ++T PTIG N E++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI 60
Query: 59 KGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
FL+WD+GGQE LR W +Y T+ +I V+DSTD ER+ + EL K +
Sbjct: 61 V-----INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKML 115
Query: 119 KNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178
+ D +LI ANKQD+ + + +I + L L + + H ++IQA CA+TG+GL +G+
Sbjct: 116 AHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD-HQWHIQACCALTGEGLCQGL 174
Query: 179 NELYQLI 185
+ +
Sbjct: 175 EWMMSRL 181
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 230 bits (590), Expect = 3e-78
Identities = 73/192 (38%), Positives = 112/192 (58%), Gaps = 8/192 (4%)
Query: 1 MGKNSAAFFENLQA-SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVK 59
MG A+ + L + ++MLGLD+AGKT+ LYRL + TVPT+G N E ++
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62
Query: 60 GQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIK 119
K I+F +WD+GGQ +RP W+ Y TD +I+V+DSTD +RM K EL +
Sbjct: 63 -----YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLD 117
Query: 120 NNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179
++ +LI ANKQDLP+A +I + LG+ + N + I + + TGDGL EG++
Sbjct: 118 EDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN-RTWTIVKSSSKTGDGLVEGMD 176
Query: 180 ELYQLILKKRKL 191
L + + +++ L
Sbjct: 177 WLVERL-REQGL 187
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 8e-78
Identities = 74/191 (38%), Positives = 112/191 (58%), Gaps = 8/191 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MG ++ F+ L S + + I++LGLD AGKTT LYRL+ + + T PTIGFN E +
Sbjct: 1 MGNIFSSMFDKLWGS-NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS- 58
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K + +WD+GGQ +RP W+ Y T +IFV+DSTD +RM EL ++
Sbjct: 59 ----YKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE 114
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
+ + +L+ ANKQD P A+ ++ K L L EL + + I A+ AI G+G+ EG++
Sbjct: 115 EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRS-WSIVASSAIKGEGITEGLDW 173
Query: 181 LYQLILKKRKL 191
L +I K+ +L
Sbjct: 174 LIDVI-KEEQL 183
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 3e-77
Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 6/169 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ ++MLGLD+AGKTT L + + PT+GFN + ++ +G IWDVGGQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLE-----HRGFKLNIWDVGGQK 73
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
LR W++Y TDG+I+V+DS D +RM++ + EL + +LI ANKQDLP
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
A+ I++ L L + + H + IQ A+TG+ L GI+ L I +
Sbjct: 134 ALSCNAIQEALELDSIRS-HHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 4e-77
Identities = 80/188 (42%), Positives = 121/188 (64%), Gaps = 12/188 (6%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
G + F + G + I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+
Sbjct: 17 RG----SLFSRIF--GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE- 69
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K I F +WDVGGQ+K+RPLW+ Y + T G+IFV+DS D ER++E EL K ++
Sbjct: 70 ----YKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE 125
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
++ + +L+ ANKQD+PNA+ + ++ LGL L + +Y+QATCA G GL++G++
Sbjct: 126 DELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRS-RTWYVQATCATQGTGLYDGLDW 184
Query: 181 LYQLILKK 188
L + K+
Sbjct: 185 LSHELSKR 192
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 4e-76
Identities = 71/184 (38%), Positives = 106/184 (57%), Gaps = 11/184 (5%)
Query: 11 NLQASGSSSVHIVMLGLDSAGKTTALYRLKFD--QYLNTVPTIGFNCEKVKGQIGKCKGI 68
L GS VH++ LGLD++GKTT + +LK Q N +PTIGF+ EK K +
Sbjct: 13 GLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFK-----SSSL 67
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNND--NFNV 126
+F ++D+ GQ + R LW+ Y + IIFVIDS+D RM K EL + + D + +
Sbjct: 68 SFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRI 127
Query: 127 PILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186
PIL ANK DL +A+ ++ +LL L + + ++I A+ AI G+GL EG++ L I
Sbjct: 128 PILFFANKMDLRDAVTSVKVSQLLCLENIKD-KPWHICASDAIKGEGLQEGVDWLQDQI- 185
Query: 187 KKRK 190
+ K
Sbjct: 186 QTVK 189
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 1e-74
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
+ +V LGLD+AGKTT L+ LK D+ VPT+ E++ G+ F +D+
Sbjct: 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELT-----IAGMTFTTFDL 76
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GG + R +WK+Y +GI+F++D D ER+ E K EL + + NVPILIL NK
Sbjct: 77 GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 136
Query: 136 DLPNAIQIKQIEKLLGLYELN-----------NMHLYYIQATCAITGDGLHEGINELYQL 184
D P AI +++ ++ GLY N + + G EG + Q
Sbjct: 137 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196
Query: 185 I 185
I
Sbjct: 197 I 197
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 223 bits (569), Expect = 4e-73
Identities = 80/171 (46%), Positives = 119/171 (69%), Gaps = 6/171 (3%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+ K I+F +WDVGGQ
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQ 219
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
+K+RPLW+ Y + T G+IFV+DS D ER+ E + EL++ + ++ + +L+ ANKQDLP
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
NA+ +I LGL+ L + +YIQATCA +GDGL+EG++ L + ++
Sbjct: 280 NAMNAAEITDKLGLHSLRH-RNWYIQATCATSGDGLYEGLDWLSNQLRNQK 329
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 4e-60
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
SS ++ +GL +GKT RL QY +T +I + K + +G + + D+
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYK--VNNNRGNSLTLIDLP 62
Query: 77 GQEKLRP-LWKSYTRCTDGIIFVIDSTDVER-MEEVKIELIKTIKNNDNFN--VPILILA 132
G E LR L + ++FV+DS +R +++V L + + ++ +LI
Sbjct: 63 GHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 122
Query: 133 NKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177
NKQD+ A K I++ L ELN + + A +
Sbjct: 123 NKQDIAMAKSAKLIQQQLEK-ELNTLRVTRSAAPSTLDSSSTAPA 166
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 1e-56
Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 22/188 (11%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-----------TVPTIGFNCEKVKGQIGKCKG 67
+ IV G +GKTT L + T+ F+ + K
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73
Query: 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF--- 124
F ++ V GQ K R DGI+FV DS R+ + +N +
Sbjct: 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGLT 132
Query: 125 --NVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELY 182
+VPI+I NK+DLP+A+ ++ + ++ + + A G G+ E + E+
Sbjct: 133 LDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG-----KFPVLEAVATEGKGVFETLKEVS 187
Query: 183 QLILKKRK 190
+L+L +
Sbjct: 188 RLVLARVA 195
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 2e-50
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 15/152 (9%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
GS I++ G ++GKT+ L L D TV + G + D
Sbjct: 44 GGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL------SAADYDGSGVTLVD 97
Query: 75 VGGQEKLRPLWKSY----TRCTDGIIFVIDS-TDVERMEEVKIELIKTIKNNDNF---NV 126
G KLR Y + G+IF++DS D +++ L+ + ++ +
Sbjct: 98 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 157
Query: 127 PILILANKQDLPNAIQIKQIEKLLGLYELNNM 158
ILI NK +L A +I+ L E+ +
Sbjct: 158 DILIACNKSELFTARPPSKIKDALES-EIQKV 188
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 2e-49
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 15/184 (8%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
S I++ G ++GKT+ L L D TV + G + D
Sbjct: 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL------SAADYDGSGVTLVD 61
Query: 75 VGGQEKLRPLWKSY----TRCTDGIIFVIDS-TDVERMEEVKIELIKTIKNNDNF---NV 126
G KLR Y + G+IF++DS D +++ L+ + ++ +
Sbjct: 62 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 121
Query: 127 PILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186
ILI NK +L A +I+ L E+ + ++ + E E +L
Sbjct: 122 DILIACNKSELFTARPPSKIKDALES-EIQKVIERRKKSLNEVERKINEEDYAENTLDVL 180
Query: 187 KKRK 190
+
Sbjct: 181 QSTD 184
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 119 bits (298), Expect = 1e-33
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 73 WDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNN-DNFNVPIL 129
G + + P + DG I+V ++ +R E ++ + P+L
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 130 IL-ANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+L Q + + L L LN H + +Q T A T G GI + + + K
Sbjct: 167 VLSCISQGDVKRMPCFYLAHELHLNLLN--HPWLVQDTEAETLTGFLNGIEWILEEVESK 224
Query: 189 RK 190
R
Sbjct: 225 RA 226
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-29
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTI-KNNDNFNVPILI 130
G + + P + DG I+V ++ +R E ++ + P+L+
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 131 LA-NKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
L+ Q + + L L LN H + +Q T A T G GI + + + KR
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLLN--HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 9e-27
Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
Query: 22 IVMLGLDSAGKTT----ALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77
I+++GL +GK++ +++ ++ L T + + +NF IWD G
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNS----SFVNFQIWDFPG 78
Query: 78 QEKLRPLW---KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
Q + R T +I+VID+ D ++ + + N ++ + +K
Sbjct: 79 QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138
Query: 135 QDL 137
D
Sbjct: 139 VDG 141
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 2e-22
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 22 IVMLGLDSAGKTT----ALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77
++++G +GK++ TI ++ + +WD GG
Sbjct: 6 LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL----GNMTLNLWDCGG 61
Query: 78 QEK-----LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN--VPILI 130
Q+ + +I V D E +++++ K +K ++ I +
Sbjct: 62 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFV 120
Query: 131 LANKQDLPNAIQIKQI 146
L +K DL + +++
Sbjct: 121 LLHKMDLVQLDKREEL 136
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-19
Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 6/172 (3%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVG 76
++++G +GKTT L +L K T+G ++ + + + + +WD
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFA 64
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
G+E+ + + V D + + + + IK + + P++++ D
Sbjct: 65 GREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLD 123
Query: 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ + Q K + LN I+ + + + +L + I+ +
Sbjct: 124 VSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 7e-16
Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 17/181 (9%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKC-------KGINFLIW 73
+ ++G AGKT+ L +L + + T G N + K K F W
Sbjct: 44 VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103
Query: 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
D GGQE + + + + + ++DS ++ I+ P++++ N
Sbjct: 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKH----YWLRHIEKYGG-KSPVIVVMN 158
Query: 134 KQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
K D + I+Q +K+ + + GDG+ L +L +
Sbjct: 159 KIDENPSYNIEQ-KKINERFPAIENRFHR---ISCKNGDGVESIAKSLKSAVLHPDSIYG 214
Query: 194 T 194
T
Sbjct: 215 T 215
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 8e-15
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKC 65
ENL G + +V++G GK+ +L + +++ PTI + K + G+
Sbjct: 12 ENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 71
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDN 123
I D GQE+ + Y R +G + V + + ++ + E IK +K++D+
Sbjct: 72 D-----ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD 126
Query: 124 FNVPILILANKQDLPN 139
VP++++ NK DLP
Sbjct: 127 --VPMVLVGNKCDLPT 140
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-14
Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 8/179 (4%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
I ++G D GKTT + R+ ++ N T+G V + I F +WD GQE
Sbjct: 14 ICLIG-DGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
K L Y G I D T + + +K + PI++ ANK D+ N
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKMN 198
Q + ++ + + N + A T L ++ + L + +N
Sbjct: 132 R-QKISKKLVMEVLKGKNYEYF---EISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVN 186
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 2e-14
Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 15/124 (12%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQY-----LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
++++G+ GK++ + ++ F L T + E I + + ++
Sbjct: 2 VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLESTSNPSLEHFSTLI------DLAVMELP 54
Query: 77 GQEKLRPLW---KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
GQ + + +++VIDS D + +I N ++ I +L +
Sbjct: 55 GQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIH 114
Query: 134 KQDL 137
K D
Sbjct: 115 KVDG 118
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 5e-14
Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 14/174 (8%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG--FNCEKVKGQIGKCKGINFLIWDVGGQ 78
+V++G GKTT + R ++ V T+G + I F +WD GQ
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN---RGPIKFNVWDTAGQ 74
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
EK L Y I + D T + V + + N+PI++ NK D+
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCE-NIPIVLCGNKVDIK 132
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQ 192
+ K K + + N+ Y A + + L + ++ L+
Sbjct: 133 DR---KVKAKSIVFHRKKNLQYY---DISAKSNYNFEKPFLWLARKLIGDPNLE 180
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-13
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFL 71
GS+ +V++G D GK+ +L + +++ PTI + K + G+
Sbjct: 1 GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD----- 55
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++++ VP++
Sbjct: 56 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED--VPMV 113
Query: 130 ILANKQDLPN 139
++ NK DLP+
Sbjct: 114 LVGNKCDLPS 123
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-13
Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
IV+ G D+A GK++ L RL +++ N T+G F ++K I + +WD G
Sbjct: 31 IVLAG-DAAVGKSSFLMRLCKNEFRENISATLGVDF---QMKTLIVDGERTVLQLWDTAG 86
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + KSY R DG++ + D T + ++ E + I++ + VPI+++ NK D+
Sbjct: 87 QERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADI 145
Query: 138 PNAIQIKQ 145
+ +
Sbjct: 146 RDTAATEG 153
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 4e-13
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG--FNCEKVKGQIGKCKGINFLIWDVGGQ 78
+V LG S GKT+ + R +D + NT TIG F + + + + + +WD G
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM--YLED-RTVRLQLWDTAGL 75
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ R L SY R + + V D T+V ++ + I ++ +V I+++ NK DL
Sbjct: 76 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLA 134
Query: 139 N 139
+
Sbjct: 135 D 135
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 6e-13
Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 33/194 (17%)
Query: 15 SGSSSVHIVMLGLDSA-GKTTALYRLKFDQYLNT-VPTIGFN---CEKVKGQIGKCKGIN 69
+G ++ IV++G D A GKT L + VPT+ N K K +
Sbjct: 19 NGKKALKIVVVG-DGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN-----EEFI 72
Query: 70 FLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
+WD GQE +LRPL SY +D ++ + + + + IK+ +
Sbjct: 73 LHLWDTAGQEEYDRLRPL--SYAD-SDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TA 128
Query: 127 PILILANKQDL----PNAIQIKQIEKL---LGLYELNNMHLYYIQATCAITGDGLHEGIN 179
+++ K DL + + ++ + L LG YI+ ++ GL+E
Sbjct: 129 KTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA-------YIE-ASSVAKIGLNEVFE 180
Query: 180 ELYQLILKKRKLQK 193
+ I + + K
Sbjct: 181 KSVDCIFSNKPVPK 194
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 8e-13
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
+V++G GK+ + +++ PTI + K + Q + D
Sbjct: 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILD-----VLDTA 74
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
GQE+ + + Y R DG + V TD E V +LI +K+ ++ P++++ANK
Sbjct: 75 GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES--FPMILVANK 132
Query: 135 QDLPNAIQIKQIE 147
DL + ++ + +
Sbjct: 133 VDLMHLRKVTRDQ 145
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 9e-13
Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V+LG ++A GK++ + R + + N PTIG F ++V I + + F IWD G
Sbjct: 6 LVLLG-EAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRV--TINEHT-VKFEIWDTAG 61
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ L Y R + V D T + + + +K + + ++ I ++ NK D
Sbjct: 62 QERFASLAPXYYRNAQAALVVYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDX 120
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+++ + G L + + T A TG E +N+++ I +K
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFE-TSAKTG----ENVNDVFLGIGEK 166
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
+V++G GK+ +L + +++ PTI + K + G+ I D
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLD-----ILDTA 59
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++++ NK
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMVLVGNK 117
Query: 135 QDLPN 139
DL
Sbjct: 118 SDLAA 122
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-12
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+ +LG D+ GK++ + R D + N PTIG F + V G + FLIWD G
Sbjct: 26 VCLLG-DTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTV--PCGN-ELHKFLIWDTAG 81
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ L Y R + + V D T + +K + +K +K + N+ + I NK DL
Sbjct: 82 QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDL 140
Query: 138 PN 139
+
Sbjct: 141 SD 142
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-12
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG--FNCEKVKGQIGKCKGINFLIWDVGGQ 78
+V LG S GKT+ + R +D + NT TIG F K + + + +WD GQ
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDF---LSKTMYLEDRTVRLQLWDTAGQ 73
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ R L SY R + + V D T+ + + I ++ +V I+++ NK DL
Sbjct: 74 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLS 132
Query: 139 N 139
+
Sbjct: 133 D 133
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-12
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFL--IWDVGG 77
+V++G GK+ + +++ PTI K GI I D G
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIED--SYTK-IC-SVDGIPARLDILDTAG 66
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPILILANKQ 135
QE+ + + Y R G + V D + EV I +K+ D+ P++++ NK
Sbjct: 67 QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKA 124
Query: 136 DLPN 139
DL +
Sbjct: 125 DLES 128
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V+LG + GKT+ + R +++ + T+G F +K+ IG K +N IWD G
Sbjct: 9 VVLLG-EGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKL--NIGG-KRVNLAIWDTAG 64
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ L Y R ++G I V D TD + ++VK +K ++ + + I+ NK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDL 123
Query: 138 PN 139
Sbjct: 124 EK 125
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-12
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
++M+G GK+ + +D+++ PT + K + G+ + I D
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQID-----ILDTA 74
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
GQE + +Y R +G + V T++E E I +K ++N VP L++ NK
Sbjct: 75 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN--VPFLLVGNK 132
Query: 135 QDLPN 139
DL +
Sbjct: 133 SDLED 137
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-12
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 12/134 (8%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKC 65
ENL G V++ +LG AGK+ + ++++ P + V Q
Sbjct: 12 ENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQP--- 68
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDN 123
++ + D + R + Y + V + + +EL+
Sbjct: 69 --VHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ 125
Query: 124 FNVPILILANKQDL 137
++P L+L NK D+
Sbjct: 126 RSIPALLLGNKLDM 139
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-12
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
++++G +S+ GKT+ L+R D + V T+G F KVK K + IWD G
Sbjct: 26 LLIIG-NSSVGKTSFLFRYADDTFTPAFVSTVGIDF---KVKTVYRHEKRVKLQIWDTAG 81
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +Y R G I + D T+ E V+ + IK N ++++ NK D+
Sbjct: 82 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDM 140
Query: 138 PNAIQIKQIE 147
+ +
Sbjct: 141 EEERVVPTEK 150
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-12
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 12/176 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+++LG DS GKT+ ++R D+Y TIG F ++V + K +WD G
Sbjct: 11 VIILG-DSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEV--TVDGDKVATMQVWDTAG 67
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI---ELIKTIKNNDNFNVPILILANK 134
QE+ + L ++ R D + V D T+ E +K E + N P +IL NK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
D + +I + L + + T A + E+ + L++ +
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLF--LTSAKNAINVDTAFEEIARSALQQNQ 181
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-12
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLI 72
S+ + + G GK++ + R + + +PT+ + I + I
Sbjct: 1 SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQ-----I 55
Query: 73 WDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILI 130
D G + + + I V T + +EE+K E I IK + ++PI++
Sbjct: 56 TDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-SIPIML 114
Query: 131 LANKQDLPN 139
+ NK D
Sbjct: 115 VGNKCDESP 123
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-12
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
I+++G DS GK+ L R D++ + + TIG F K+K K + IWD G
Sbjct: 6 ILLIG-DSGVGKSCLLVRFVEDKFNPSFITTIGIDF---KIKTVDINGKKVKLQIWDTAG 61
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +Y R GII V D TD +K + KT+ + N +L++ NK D+
Sbjct: 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ + G + + +I+ + A D ++E L +LI +K
Sbjct: 121 ET----RVVTADQGEALAKELGIPFIE-SSAKNDDNVNEIFFTLAKLIQEK 166
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-12
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 25/132 (18%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--F--------NCEKVKGQIGKCKGIN 69
IV+LG D A GKT+ + + TIG F V QI
Sbjct: 9 IVVLG-DGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI------- 60
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVP 127
WD+GGQ + Y G++ V D T+ + E ++ ++K +
Sbjct: 61 ---WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117
Query: 128 ILILANKQDLPN 139
+ ++ NK DL +
Sbjct: 118 VALVGNKIDLEH 129
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-12
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINF 70
S S I +LG S GK++ + Q++++ PTI K V GQ +
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQ---- 57
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPI 128
+ D GQ++ ++Y+ +G I V T ++ E +K + + +PI
Sbjct: 58 -LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ--IPI 114
Query: 129 LILANKQDLPN 139
+++ NK+DL
Sbjct: 115 MLVGNKKDLHM 125
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-12
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
+V+LG GK+ + ++ PTI K V + I D
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLE-----ILDTA 59
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
G E+ + Y + G I V + + +++K + I +K + VP++++ NK
Sbjct: 60 GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK--VPVILVGNK 117
Query: 135 QDLPNAIQIKQIE 147
DL + ++ E
Sbjct: 118 VDLESEREVSSSE 130
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-12
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+ +LG D+ GK++ ++R D + N PTIG F K + + FLIWD G
Sbjct: 9 VCLLG-DTGVGKSSIMWRFVEDSFDPNINPTIGASF---MTKTVQYQNELHKFLIWDTAG 64
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
E+ R L Y R + I V D T E +K ++ ++ + ++ + I NK DL
Sbjct: 65 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDL 123
Query: 138 PN 139
+
Sbjct: 124 TD 125
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 4e-12
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
++++G DS GK+ L R D Y + + TIG F K++ K I IWD G
Sbjct: 36 LLLIG-DSGVGKSCLLLRFADDTYTESYISTIGVDF---KIRTIELDGKTIKLQIWDTAG 91
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 92 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDL 150
Query: 138 PNAIQIKQIE 147
+
Sbjct: 151 TTKKVVDYTT 160
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 4e-12
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
IV++G ++ GKT + R + TIG F +K + + IWD G
Sbjct: 29 IVLIG-NAGVGKTCLVRRFTQGLFPPGQGATIGVDF---MIKTVEINGEKVKLQIWDTAG 84
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +SY R + +I D T E + E ++ I+ + V +++ NK DL
Sbjct: 85 QERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDL 143
Query: 138 PNAIQIKQIE 147
++ Q
Sbjct: 144 AERREVSQQR 153
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 5e-12
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
++++G DS GK+ L R D Y + + TIG F K++ K I IWD G
Sbjct: 19 LLLIG-DSGVGKSCLLLRFADDTYTESYISTIGVDF---KIRTIELDGKTIKLQIWDTAG 74
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDL 133
Query: 138 PNAIQIKQIE 147
+
Sbjct: 134 TTKKVVDYTT 143
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 5e-12
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
++M+G GK+ + +D+++ PT + K + G+ + I D
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQID-----ILDTA 60
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
GQE + +Y R +G + V T++E E I +K ++N VP L++ NK
Sbjct: 61 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN--VPFLLVGNK 118
Query: 135 QDLPNAIQIKQIE 147
DL + Q+ E
Sbjct: 119 SDLEDKRQVSVEE 131
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 5e-12
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 17/148 (11%)
Query: 5 SAAFFENLQASGSSS---VHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK--- 57
ENL + V + + G GK+ + R +++ PT+
Sbjct: 11 VDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT 70
Query: 58 VKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELI 115
+ ++ ++ I D GQE + + R +G + V D TD EEV ++
Sbjct: 71 IDDEV-----VSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL 124
Query: 116 KTIKNNDNFNVPILILANKQDLPNAIQI 143
IK N V ++++ NK DL ++ Q+
Sbjct: 125 DEIKKPKN--VTLILVGNKADLDHSRQV 150
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 5e-12
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
++++G +S+ GKT+ L+R D + V T+G F KVK K I IWD G
Sbjct: 25 LLLIG-NSSVGKTSFLFRYADDSFTPAFVSTVGIDF---KVKTVYRHDKRIKLQIWDTAG 80
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +Y R G + + D + E V+ + IK N ++++ NK DL
Sbjct: 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDL 139
Query: 138 PNAIQIKQIE 147
+ + +
Sbjct: 140 EDERVVPAED 149
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 6e-12
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 14/185 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
I+++G DS GK+ L R D++ + + TIG F K+K K + +WD G
Sbjct: 23 ILLIG-DSGVGKSCLLVRFVEDKFNPSFITTIGIDF---KIKTVDINGKKVKLQLWDTAG 78
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +Y R GII V D TD +K + KT+ + N +L++ NK D+
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKM 197
+ + G + + +I+ + A D ++E L +LI +K K +
Sbjct: 138 ET----RVVTADQGEALAKELGIPFIE-SSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGV 192
Query: 198 NKVKK 202
K+
Sbjct: 193 GNGKE 197
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 7e-12
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
I+++G +S+ GKT+ L+R D + V T+G F KVK K I IWD G
Sbjct: 11 ILIIG-NSSVGKTSFLFRYADDSFTPAFVSTVGIDF---KVKTIYRNDKRIKLQIWDTAG 66
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
E+ R + +Y R G I + D T+ E V+ + IK N +L++ NK D+
Sbjct: 67 LERYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDM 125
Query: 138 PNAIQIKQIE 147
+ +
Sbjct: 126 EDERVVSSER 135
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 7e-12
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
++M+G GK+ + +D+++ PT + K + G+ + I D
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQID-----ILDTA 70
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
GQE + +Y R +G + V T++E E I +K ++N VP L++ NK
Sbjct: 71 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN--VPFLLVGNK 128
Query: 135 QDLPN 139
DL +
Sbjct: 129 SDLED 133
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 7e-12
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V+LG +SA GK++ + R Q+ TIG F + V + + F IWD G
Sbjct: 9 LVLLG-ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV--CLDD-TTVKFEIWDTAG 64
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ L Y R I V D T+ E K +K ++ + N+ I + NK DL
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADL 123
Query: 138 PN 139
N
Sbjct: 124 AN 125
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 9e-12
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V++G DS GK+ L R +++ L + TIG F + K I IWD G
Sbjct: 32 VVLIG-DSGVGKSNLLSRFTRNEFNLESKSTIGVEF---ATRSIQVDGKTIKAQIWDTAG 87
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
E+ R + +Y R G + V D E V+ +K ++++ + N+ I+++ NK DL
Sbjct: 88 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDL 146
Query: 138 PN 139
+
Sbjct: 147 RH 148
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 9e-12
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V++G DS GK+ L R +++ L + TIG F + Q+ K I IWD G
Sbjct: 8 VVLIG-DSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI--QVDG-KTIKAQIWDTAG 63
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +Y R G + V D E V+ +K ++++ + N+ I+++ NK DL
Sbjct: 64 QERYRRITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDL 122
Query: 138 PN 139
+
Sbjct: 123 RH 124
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 9e-12
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN---CEKVKGQIGKCKGINF 70
++ V++G + GKT L + + +PT+ N V G K +N
Sbjct: 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNL 80
Query: 71 LIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
+WD GQE +LRPL SY + TD + E V+ + ++++ N P
Sbjct: 81 GLWDTAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTP 136
Query: 128 ILILANKQDLPN 139
I+++ K DL +
Sbjct: 137 IILVGTKLDLRD 148
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-11
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 23/137 (16%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
++++G DS GKT L+R D + + TIG + +++K QI
Sbjct: 11 LLLIG-DSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI-------- 61
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ R + +Y R GI+ V D T+ + + ++ I+ I+ + + +V +I
Sbjct: 62 --WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMI 118
Query: 131 LANKQDLPNAIQIKQIE 147
L NK D+ + Q+ +
Sbjct: 119 LGNKCDVNDKRQVSKER 135
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-11
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
+V+ G GK++ + R + +T +PTI + + + I D
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQ-----ITDTT 64
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPILILANK 134
G + + + I V T + +EE+ +LI IK + ++P++++ NK
Sbjct: 65 GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNK 123
Query: 135 QDLP 138
D
Sbjct: 124 CDET 127
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-11
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
+V+LG GK+ + ++ PTI + K V Q + I D
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLE-----ILDTA 59
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPILILANK 134
G E+ + Y + G V T +++ E I +K+ ++ VP++++ NK
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED--VPMILVGNK 117
Query: 135 QDLPN 139
DL +
Sbjct: 118 CDLED 122
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-11
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
++++G GKT+ + R D + T+G +K++ QI
Sbjct: 29 VIIIG-SRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI-------- 79
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ + +Y R GII V D T E +++ + +K I + + +L+
Sbjct: 80 --WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLL 136
Query: 131 LANKQDLPNAIQIKQIE 147
+ NK D +I + +
Sbjct: 137 VGNKLDCETDREITRQQ 153
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-11
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V++G +S GKT L R +++ ++ TIG F + + + IWD G
Sbjct: 28 VVLIG-ESGVGKTNLLSRFTRNEFSHDSRTTIGVEF---STRTVMLGTAAVKAQIWDTAG 83
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
E+ R + +Y R G + V D T + V+ +K + ++ + ++++ NK DL
Sbjct: 84 LERYRAITSAYYRGAVGALLVFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDL 142
Query: 138 PN 139
Sbjct: 143 SQ 144
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-11
Identities = 40/177 (22%), Positives = 63/177 (35%), Gaps = 25/177 (14%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN---CEKVKGQIGKCKGINF 70
S S + V +G + GKT L + + VPT+ N V G +N
Sbjct: 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG-----ATVNL 58
Query: 71 LIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
+WD GQE +LRPL SY D I E V + I +K+ VP
Sbjct: 59 GLWDTAGQEDYNRLRPL--SYRG-ADVFILAFSLISKASYENVSKKWIPELKHYAP-GVP 114
Query: 128 ILILANKQDL---PNAIQIKQIEKLLGLYELNNM-----HLYYIQATCAITGDGLHE 176
I+++ K DL + + + YI+ + + + +
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE-CSSKSQENVKG 170
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-11
Identities = 29/185 (15%), Positives = 63/185 (34%), Gaps = 30/185 (16%)
Query: 21 HIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEK---VKGQIGKCKGINFLIWD 74
+ +LG +GK++ ++R + T +K V GQ LI +
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSYQVL---EKTESEQYKKEMLVDGQT-----HLVLIRE 60
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIK--NNDNFNVPILI 130
G + ++ D +IFV D + V + +++ + ++
Sbjct: 61 EAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115
Query: 131 LANKQDLPN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ + + + L ++ Y T A G + E+ Q ++
Sbjct: 116 TQDRISASSPRVVGDARARALXA--DMKRCSYY---ETXATYGLNVDRVFQEVAQKVVTL 170
Query: 189 RKLQK 193
RK Q+
Sbjct: 171 RKQQQ 175
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-11
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 24/178 (13%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG-FNCE-KVKGQIGKCKGINFLIWDVGG 77
+ ++G S+GK+ ++R Y+ P G F E V GQ LI D GG
Sbjct: 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS-----YLLLIRDEGG 76
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQ 135
+L+ + D ++FV D + V + + +N VP++++ +
Sbjct: 77 PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE--VPMVLVGTQD 129
Query: 136 DLPNAIQIKQIEKLLGL---YELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+ A + I+ +L Y + TCA G + ++ Q ++ RK
Sbjct: 130 AISAANP-RVIDDSRARKLSTDLKRCT--YYE-TCATYGLNVERVFQDVAQKVVALRK 183
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-11
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V++G D++ GKT + R K + TIG F +K + K + IWD G
Sbjct: 32 LVLVG-DASVGKTCVVQRFKTGAFSERQGSTIGVDF---TMKTLEIQGKRVKLQIWDTAG 87
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +SY R +G I D T V I+ ++ N+ L++ NK DL
Sbjct: 88 QERFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDL 146
Query: 138 PNAIQIKQIE 147
++ E
Sbjct: 147 SELREVSLAE 156
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-11
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
++++G +S GK+ L R D Y + + TIG + + VK QI
Sbjct: 11 LLLIG-NSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI-------- 61
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ R + SY R + GII V D TD E VK ++ I V L+
Sbjct: 62 --WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLL 118
Query: 131 LANKQDLPNAIQIKQIE 147
+ NK DL + ++
Sbjct: 119 VGNKCDLKDKRVVEYDV 135
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-11
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 24/138 (17%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQYL--NTVPTIG---------FNCEKVKGQIGKCKGIN 69
++++G DS GKT L R K +L + T+G + KVK Q+
Sbjct: 13 VMLVG-DSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM------- 64
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
WD GQE+ R + +Y R ++ + D T+ + ++ + I +V ++
Sbjct: 65 ---WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALM 120
Query: 130 ILANKQDLPNAIQIKQIE 147
+L NK D + +K+ +
Sbjct: 121 LLGNKVDSAHERVVKRED 138
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-11
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V+LG D GK++ + R DQ+ TIG F + + + + F IWD G
Sbjct: 15 LVLLG-DVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTL--AVND-ATVKFEIWDTAG 70
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ L Y R I V D T+ E K + ++ ++ N N+ + + NK DL
Sbjct: 71 QERYHSLAPMYYRGAAAAIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDL 129
Query: 138 PN 139
+
Sbjct: 130 LD 131
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 3e-11
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+++G + GK+ L++ +++ ++ TIG F V +G K + IWD G
Sbjct: 28 FLVIG-SAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVV--NVGG-KTVKLQIWDTAG 83
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +SY R G + V D T E + + + + N+ +++ NK+DL
Sbjct: 84 QERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDL 142
Query: 138 PNAIQIKQIE 147
++ +E
Sbjct: 143 DPEREVTFLE 152
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-11
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 33/206 (16%)
Query: 15 SGSSSVHIVMLGLDSA-GKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGIN 69
S S + V +G D A GKT L +++ +PT+ N V GQI +N
Sbjct: 5 SVSKFIKCVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQI-----VN 58
Query: 70 FLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
+WD GQE +LRPL SY R D + E V + + ++ NV
Sbjct: 59 LGLWDTAGQEDYSRLRPL--SY-RGADIFVLAFSLISKASYENVLKKWMPELRR-FAPNV 114
Query: 127 PILILANKQDL----------PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176
PI+++ K DL N I Q E+L ++ YI+ + T +
Sbjct: 115 PIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL--RKQIGAAA--YIE-CSSKTQQNVKA 169
Query: 177 GINELYQLILKKRKLQKTNKMNKVKK 202
+ +++L+ + ++ + K +
Sbjct: 170 VFDTAIKVVLQPPRRKEVPRRRKNHR 195
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 4e-11
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 24/137 (17%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQYLNT-VPTIG---------FNCEKVKGQIGKCKGINF 70
+V++G + A GK++ + R + TIG N E V+ +
Sbjct: 8 MVVVG-NGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLML-------- 58
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ + K+Y R + V +TD E E + + + ++P +
Sbjct: 59 --WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVG-DIPTAL 114
Query: 131 LANKQDLPNAIQIKQIE 147
+ NK DL + IK E
Sbjct: 115 VQNKIDLLDDSCIKNEE 131
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 5e-11
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
IV++G DS GK+ L R +++ +++ TIG +++K QI
Sbjct: 16 IVLIG-DSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQI-------- 66
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ R + +Y R G + V D + E + ++ N + NV + +
Sbjct: 67 --WDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLSELRENADDNVAVGL 123
Query: 131 LANKQDLPNAIQIKQIE 147
+ NK DL + + E
Sbjct: 124 IGNKSDLAHLRAVPTEE 140
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 5e-11
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+++G D+ GK+ L + ++ TIG F V I K I IWD G
Sbjct: 24 YIIIG-DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV--NIDG-KQIKLQIWDTAG 79
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE R + +SY R G + V D T E + ++ + + + N+ I+++ NK DL
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDL 138
Query: 138 PNAIQIKQIE 147
+ +K+ E
Sbjct: 139 ESRRDVKREE 148
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 6e-11
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 25/132 (18%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
+++LG DS GKT+ + + ++ TIG + V QI
Sbjct: 11 VIILG-DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI-------- 61
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI---ELIKTIKNNDNFNVP 127
WD GQE+ + L ++ R D + V D T + + E + D N P
Sbjct: 62 --WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119
Query: 128 ILILANKQDLPN 139
++L NK DL N
Sbjct: 120 FVVLGNKIDLEN 131
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 6e-11
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 13/123 (10%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
+V+LG GKT+ ++ ++ PT+ K + + D
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLH-----LVDTA 80
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
GQ++ L S+ G + V T + + ++ + + VP++++ NK
Sbjct: 81 GQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR--VPVVLVGNK 138
Query: 135 QDL 137
DL
Sbjct: 139 ADL 141
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 6e-11
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 23/137 (16%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
+++G ++ GK+ L++ ++ ++ TIG + VK QI
Sbjct: 13 FLVIG-NAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI-------- 63
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ R + +SY R G + V D T E + + + + N+ I++
Sbjct: 64 --WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALT-NWLTDARMLASQNIVIIL 120
Query: 131 LANKQDLPNAIQIKQIE 147
NK+DL ++ +E
Sbjct: 121 CGNKKDLDADREVTFLE 137
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 7e-11
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 22/188 (11%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
+ LG DS GKT+ LY+ ++ + T+G + G +G+ + I+
Sbjct: 14 FLALG-DSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPI 128
+WD G E+ R L ++ R G + + D T+ + V+ I ++ + + N I
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM--HAYSENPDI 130
Query: 129 LILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL + +K+ E+ L E + Y + T A G + I L LI+K+
Sbjct: 131 VLCGNKSDLEDQRAVKE-EEARELAEKYGIP--YFE-TSAANGTNISHAIEMLLDLIMKR 186
Query: 189 --RKLQKT 194
R + K+
Sbjct: 187 MERSVDKS 194
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 7e-11
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+++G D GK+ L++ ++ + TIG F + ++ + I IWD G
Sbjct: 18 YIIIG-DMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII--EVSG-QKIKLQIWDTAG 73
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +SY R G + V D T + + +N N N I+++ NK DL
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADL 132
Query: 138 PNAIQIKQIE 147
+ E
Sbjct: 133 EAQRDVTYEE 142
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 8e-11
Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 35/205 (17%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKC 65
ENL +V++G + GKT L D++ VPT+ N +V G
Sbjct: 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDG----- 70
Query: 66 KGINFLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNND 122
K + +WD GQE +LRPL SY TD I+ + +E + + + +K+
Sbjct: 71 KQVELALWDTAGQEDYDRLRPL--SYPD-TDVILMCFSVDSPDSLENIPEKWVPEVKHF- 126
Query: 123 NFNVPILILANKQDL--------------PNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168
NVPI+++ANK+DL ++ + + Y++ A
Sbjct: 127 CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM--AVRIQAYD--YLE-CSA 181
Query: 169 ITGDGLHEGINELYQLILKKRKLQK 193
T +G+ E + L+KR +
Sbjct: 182 KTKEGVREVFETATRAALQKRYGSQ 206
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 8e-11
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 25/132 (18%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
+++LG D GK++ + R +++ TIG + V QI
Sbjct: 10 VILLG-DGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI-------- 60
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI---ELIKTIKNNDNFNVP 127
WD GQE+ R L + R +D + D + + + E I + + P
Sbjct: 61 --WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118
Query: 128 ILILANKQDLPN 139
+IL NK D+
Sbjct: 119 FVILGNKIDISE 130
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 8e-11
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
I+++G +S GK++ L R D + TIG F KVK IWD G
Sbjct: 18 ILIIG-ESGVGKSSLLLRFTDDTFDPELAATIGVDF---KVKTISVDGNKAKLAIWDTAG 73
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R L SY R G+I V D T + ++ L + ++ +++ NK D
Sbjct: 74 QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKM 197
N +++++ GL + +I+ A T DG+ EL + I++ L ++
Sbjct: 134 EN----REVDRNEGLKFARKHSMLFIE-ASAKTCDGVQCAFEELVEKIIQTPGLWESENQ 188
Query: 198 NK 199
N
Sbjct: 189 NS 190
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 9e-11
Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 12/122 (9%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEK---VKGQIGKCKGINFLIWDVGG 77
+++LG GK+ + G ++ V G+ ++D+
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLM-----VYDIWE 58
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQ 135
Q+ R L D + V TD E+ ++ + D+ VPI+++ NK
Sbjct: 59 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD--VPIILVGNKS 116
Query: 136 DL 137
DL
Sbjct: 117 DL 118
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-10
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 22/196 (11%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
++ LG DS GKTT LYR +++ + T+G +N + G GK ++
Sbjct: 28 LLALG-DSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPI 128
+WD GQE+ R L ++ R G + + D T + V+ + ++ N N I
Sbjct: 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA--NAYCENPDI 144
Query: 129 LILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+++ NK DLP+ ++ + + L + + Y + T A TG + + + L LI+K+
Sbjct: 145 VLIGNKADLPDQREVNE-RQARELADKYGIP--YFE-TSAATGQNVEKAVETLLDLIMKR 200
Query: 189 --RKLQKTNKMNKVKK 202
+ ++KT + V
Sbjct: 201 MEQCVEKTQIPDTVNG 216
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 1e-10
Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 35/193 (18%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWD 74
SV +V++G GKT+ L + + PT+ +VKG K ++ IWD
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKG-----KPVHLHIWD 88
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQ+ +LRPL Y ++ D T + + + + VPI+++
Sbjct: 89 TAGQDDYDRLRPL--FYPD-ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVV 144
Query: 132 ANKQDL--------------PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177
K DL + + +++ + + Y++ A D +H
Sbjct: 145 GCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM--ARSVGAVA--YLE-CSARLHDNVHAV 199
Query: 178 INELYQLILKKRK 190
E ++ L R
Sbjct: 200 FQEAAEVALSSRG 212
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-10
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
++++G DS GK++ L R + + + + TIG F K++ + + IWD G
Sbjct: 12 LLIIG-DSGVGKSSLLLRFADNTFSGSYITTIGVDF---KIRTVEINGEKVKLQIWDTAG 67
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +Y R T G+I V D T E VK + I N + +V +++ NK D
Sbjct: 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVK-RWLHEINQNCD-DVCRILVGNKNDD 125
Query: 138 PNAIQIKQIE 147
P ++ +
Sbjct: 126 PERKVVETED 135
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 2e-10
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 3 KNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQ 61
+S+ + +V++G + GKT L DQ+ VPT+ F +
Sbjct: 9 HHSSGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIE 67
Query: 62 IGKCKGINFLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
+ K + +WD GQE +LRPL SY TD I+ + +E + + +
Sbjct: 68 VDG-KQVELALWDTAGQEDYDRLRPL--SYPD-TDVILMCFSIDSPDSLENIPEKWTPEV 123
Query: 119 KNNDNFNVPILILANKQDL 137
K+ NVPI+++ NK+DL
Sbjct: 124 KHFCP-NVPIILVGNKKDL 141
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 3e-10
Identities = 19/130 (14%), Positives = 50/130 (38%), Gaps = 13/130 (10%)
Query: 21 HIVMLGLDSA-GKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKG--INFLIWDVG 76
++++G +S GK+T Q + E + + +++D+
Sbjct: 4 KVMLVG-ESGVGKSTLAGTFGGLQGDHAHEMENS---EDTYERRIMVDKEEVTLIVYDIW 59
Query: 77 GQEKLRPLWKS-YTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILAN 133
Q + + D + V TD +V + ++ + + + +P++++ N
Sbjct: 60 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGN 117
Query: 134 KQDLPNAIQI 143
K DL + ++
Sbjct: 118 KSDLARSREV 127
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 5e-10
Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 25/132 (18%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG---------FNCEKVKGQIGKCKGINF 70
++++G GK+T Q + P + E+V +
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV-------- 76
Query: 71 LIWDVGGQEKLRPLWKS-YTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVP 127
+D+ Q + + D + V TD +V + ++ + + + +P
Sbjct: 77 --YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LP 132
Query: 128 ILILANKQDLPN 139
++++ NK DL
Sbjct: 133 VILVGNKSDLAR 144
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 6e-10
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN---CEKVKGQIGKCKGINFLIWDVGG 77
IV++G GKT L+ D + VPT+ N ++ + I +WD G
Sbjct: 10 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDT-----QRIELSLWDTSG 64
Query: 78 QE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
+RPL SY +D ++ D + E ++ V + I+ N +L++ K
Sbjct: 65 SPYYDNVRPL--SYPD-SDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCK 120
Query: 135 QDL 137
DL
Sbjct: 121 SDL 123
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 7e-10
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 16/134 (11%)
Query: 11 NLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN---CEKVKGQIGKCK 66
++ + + IV++G GKT L+ D + VPT+ N ++ +
Sbjct: 20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDT-----Q 74
Query: 67 GINFLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN 123
I +WD G +RPL SY +D ++ D + E ++ V + I+
Sbjct: 75 RIELSLWDTSGSPYYDNVRPL--SYPD-SDAVLICFDISRPETLDSVLKKWKGEIQEF-C 130
Query: 124 FNVPILILANKQDL 137
N +L++ K DL
Sbjct: 131 PNTKMLLVGCKSDL 144
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 9e-10
Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 14/141 (9%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT---VPTIGFNCEK---VKGQIGKCKGI 68
G + +V++G GK+T E+ V G+ I
Sbjct: 2 FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGE--SATII 59
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNV 126
+W+ G+ L + D + V TD E+ ++ + ++ +
Sbjct: 60 LLDMWENKGEN--EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED--I 115
Query: 127 PILILANKQDLPNAIQIKQIE 147
PI+++ NK DL ++ E
Sbjct: 116 PIILVGNKSDLVRXREVSVSE 136
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 9e-10
Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 27/192 (14%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
++ V++G + GKT L + + F+ + K +N +WD GQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-KPVNLGLWDTAGQ 63
Query: 79 E---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
E +LRPL SY + TD + E V+ + ++++ N PI+++ K
Sbjct: 64 EDYDRLRPL--SYPQ-TDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKL 119
Query: 136 DLPN--------------AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
DL + I Q + E+ + Y++ A+T GL +E
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAM--AKEIGAVK--YLE-CSALTQRGLKTVFDEA 174
Query: 182 YQLILKKRKLQK 193
+ +L ++K
Sbjct: 175 IRAVLCPPPVKK 186
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-09
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 23/138 (16%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--F-------NCEKVKGQIGKCKGINF 70
I+++G DS GKT YR ++ T TIG F + E++K Q+
Sbjct: 23 IIVIG-DSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL-------- 73
Query: 71 LIWDVGGQEKLRP-LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
WD GQE+ R + + Y R ++FV D T++ + + + ++ ++P +
Sbjct: 74 --WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI 131
Query: 130 ILANKQDLPNAIQIKQIE 147
++ NK DL +AIQ+
Sbjct: 132 LVGNKCDLRSAIQVPTDL 149
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-09
Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 24/133 (18%)
Query: 22 IVMLGLDSA-GKTTALYRL--KFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGI 68
+ ++G ++ GK+ + K ++ + T G V ++
Sbjct: 23 VAVVG-EATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVEL------ 75
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNV 126
+ D G + + Y I V D + +E E K EL+K+ + + +
Sbjct: 76 --FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL 133
Query: 127 PILILANKQDLPN 139
+++ANK DLP
Sbjct: 134 RAVLVANKTDLPP 146
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-09
Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 15/127 (11%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNC----EKVKGQIGKCKGINFLIWDVG 76
+V+LG GKT+ Q + +G + V G+ + D
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLV-----VVDTW 60
Query: 77 GQEKLRPLW--KSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILA 132
EKL W +S + + V D E ++ D+ VPI+++
Sbjct: 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH--VPIILVG 118
Query: 133 NKQDLPN 139
NK DL
Sbjct: 119 NKADLAR 125
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 3e-09
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 16/143 (11%)
Query: 2 GKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN---CEK 57
G+ + F + +V++G GKT L L D Y T VPT+ N C +
Sbjct: 10 GRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLE 69
Query: 58 VKGQIGKCKGINFLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIEL 114
+ + + +WD G +RPL Y+ +D ++ D + E ++ +
Sbjct: 70 TEE-----QRVELSLWDTSGSPYYDNVRPL--CYSD-SDAVLLCFDISRPETVDSALKKW 121
Query: 115 IKTIKNNDNFNVPILILANKQDL 137
I + + +L++ K DL
Sbjct: 122 RTEILDY-CPSTRVLLIGCKTDL 143
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-09
Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 27/197 (13%)
Query: 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN---CEKVKGQIGKCKGIN 69
+ V V++G + GKT+ + + Y +PT N V G + +
Sbjct: 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDG-----RPVR 69
Query: 70 FLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
+ D GQ+ KLRPL YT TD + + V + + I+ +
Sbjct: 70 LQLCDTAGQDEFDKLRPL--CYTN-TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KA 125
Query: 127 PILILANKQDLPNAIQI-----KQIEKLLGLYELNNM-----HLYYIQATCAITGDGLHE 176
PI+++ + DL +++ K EK + + YI+ A+T L E
Sbjct: 126 PIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE-CSALTQKNLKE 184
Query: 177 GINELYQLILKKRKLQK 193
+ ++ Q+
Sbjct: 185 VFDAAIVAGIQYSDTQQ 201
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-08
Identities = 45/204 (22%), Positives = 70/204 (34%), Gaps = 45/204 (22%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG---------------------------- 52
V+LG S GK++ + RL D + TIG
Sbjct: 10 TVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNIN 69
Query: 53 --------FNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDV 104
+ I F IWD GQE+ + Y R I V D ++
Sbjct: 70 SINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNS 129
Query: 105 ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQ 164
++ K + +K + N I+++ANK D Q++ L + +L +IQ
Sbjct: 130 NTLDRAK-TWVNQLKISS--NYIIILVANKIDKNK----FQVDILEVQKYAQDNNLLFIQ 182
Query: 165 ATCAITGDGLHEGINELYQLILKK 188
T A TG + L + I K
Sbjct: 183 -TSAKTGTNIKNIFYMLAEEIYKN 205
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 21 HIVMLGLDSA-GKTTALYRLKFDQYLNTV---PTIGFNCEK---VKGQIGKCKGINFLIW 73
+V++G + GK+T E+ V G+ I +W
Sbjct: 39 RVVLIG-EQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGE--SATIILLDMW 95
Query: 74 DVGGQEK-LRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILI 130
+ G+ + L + D + V TD E+ ++ + ++ +PI++
Sbjct: 96 ENKGENEWLHD---HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED--IPIIL 150
Query: 131 LANKQDLPN 139
+ NK DL
Sbjct: 151 VGNKSDLVR 159
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 3e-08
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFL 71
G+ + V++G + GKT L D + VPT+ F+ V +G K
Sbjct: 12 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGG-KQYLLG 69
Query: 72 IWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPI 128
++D GQE +LRPL SY TD + + + VK E + +K NVP
Sbjct: 70 LYDTAGQEDYDRLRPL--SYPM-TDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPF 125
Query: 129 LILANKQDL 137
L++ + DL
Sbjct: 126 LLIGTQIDL 134
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 7e-06
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL 152
D ++F++D T + ++ +I +PI ++ NK D+ + LG+
Sbjct: 85 DRVLFMVDGTTTDAVDPAEI--WPEFIARLPAKLPITVVRNKADITG--------ETLGM 134
Query: 153 YELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
E+N L + A TG EG++ L + +
Sbjct: 135 SEVNGHALIRL---SARTG----EGVDVLRNHLKQS 163
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 1e-05
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 93 DGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG 151
D ++ ID+ + +I E +K + P++++ NK DL I +E
Sbjct: 305 DLVLLTIDAATGWTTGDQEIYEQVK--------HRPLILVMNKIDLVEKQLITSLEYPEN 356
Query: 152 LYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ + I T A +GI+ L IL+
Sbjct: 357 ITQ--------IVHTAAAQK----QGIDSLETAILEI 381
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-05
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 93 DGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG 151
D ++FV+D++ E+ KI E IK N L++ NK D+ I ++I+ LG
Sbjct: 325 DIVLFVLDASSPLDEEDRKILERIK--------NKRYLVVINKVDVVEKINEEEIKNKLG 376
Query: 152 LYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ H+ I A+ G EG+ +L + I ++
Sbjct: 377 ----TDRHMVKI---SALKG----EGLEKLEESIYRE 402
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-05
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIE 113
+ K + F + DVGGQ R W I+F++ S++ R+ E +
Sbjct: 197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTE-SLN 255
Query: 114 LIKTIKNNDNF-NVPILILANKQDL 137
+ +TI NN F NV I++ NK DL
Sbjct: 256 IFETIVNNRVFSNVSIILFLNKTDL 280
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-05
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIE 113
+ +NF ++DVGGQ R W IIFV+ S+ R++E +
Sbjct: 213 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LN 271
Query: 114 LIKTIKNNDNF-NVPILILANKQDL 137
L K+I NN + +++ NKQDL
Sbjct: 272 LFKSIWNNRWLRTISVILFLNKQDL 296
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-05
Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 92 TDGIIFVIDSTDVERME-EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL 150
+ II++ D ++ E +I L + + + ++P L++ NK D+ + IK++EK +
Sbjct: 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHG-EFKDLPFLVVINKIDVADEENIKRLEKFV 305
Query: 151 GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKMNKVKK 202
LN + A+ G G+ E+ + + + K+ + +
Sbjct: 306 KEKGLNPI------KISALKGTGIDLVKEEIIKTLRPLAEKVAREKIERELR 351
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 1e-04
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEV 110
K G + ++DVGGQ R W +IF ++ RM E
Sbjct: 176 GENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET 235
Query: 111 KIELIKTIKNNDNF-NVPILILANKQDL 137
EL + F ++ NK D+
Sbjct: 236 -KELFDWVLKQPCFEKTSFMLFLNKFDI 262
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 125 NVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176
+ +++ NK DL + ++++ +L +Y LY I T A TG G+ E
Sbjct: 115 ELETVMVINKMDLYDEDDLRKVRELEEIYS----GLYPIVKTSAKTGMGIEE 162
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 1e-04
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIE 113
K ++F ++DVGGQ R W IIF + +D + RM E ++
Sbjct: 189 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MK 247
Query: 114 LIKTIKNNDNF-NVPILILANKQDL 137
L +I NN F + I++ NK+DL
Sbjct: 248 LFDSICNNKWFTDTSIILFLNKKDL 272
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 95 IIFVIDSTDVERME-EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ-IEKLLGL 152
I+F+ID ++ + + +I L +IK+ N I+I NK D N + + L+
Sbjct: 112 ILFIIDISEQCGLTIKEQINLFYSIKS-VFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQ 170
Query: 153 YELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKMNKV 200
N + + +TG G+ + +L+ + ++
Sbjct: 171 ILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAESILLDQEQL 218
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 2e-04
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 18/98 (18%)
Query: 93 DGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL 150
D I++++D +E+ EL L +ANK D
Sbjct: 314 DLILYLLDLGTERLDDELTEIRELKAAHPA-----AKFLTVANKLDRAANADALIRAIA- 367
Query: 151 GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ + I A+ G +GI+ L Q +
Sbjct: 368 ---DGTGTEVIGI---SALNG----DGIDTLKQHMGDL 395
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 4e-04
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIE 113
+ + F + DVGGQ R W I+F++ ++ RMEE
Sbjct: 163 DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KA 221
Query: 114 LIKTIKNNDNF-NVPILILANKQDL 137
L +TI F N +++ NK+DL
Sbjct: 222 LFRTIITYPWFQNSSVILFLNKKDL 246
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 39.1 bits (90), Expect = 7e-04
Identities = 32/240 (13%), Positives = 72/240 (30%), Gaps = 75/240 (31%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTT-ALYRLKFDQYLNTVP------TIGFNCEKVKGQI 62
L+ + + + G+ +GKT AL + + + NC + +
Sbjct: 145 LELRPAKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVL 199
Query: 63 GKCKGINFLI---WDVGG-------------QEKLRPLW--KSYTRCTDGIIFVIDSTDV 104
+ + + I W Q +LR L K Y C + V+ +V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC----LLVLL--NV 253
Query: 105 ERMEEVKIELIKTIKNNDNFNV--PILILANKQDLPNAI------QIKQIEKLLGLYELN 156
+ + + FN+ IL+ + + + + I + L
Sbjct: 254 QNAKAW-----------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 157 NMHLY--YI---------QA------TCAITGDGLHEGIN--ELYQLILKKRKLQKTNKM 197
L Y+ + +I + + +G+ + ++ + KL +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIES 361
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 202 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 100.0 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 100.0 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 100.0 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 100.0 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 100.0 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 100.0 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 100.0 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 100.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 100.0 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 100.0 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 100.0 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 100.0 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 100.0 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 100.0 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 100.0 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 100.0 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 100.0 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 100.0 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 100.0 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 100.0 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 100.0 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 100.0 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 100.0 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 100.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 100.0 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 100.0 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 100.0 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 100.0 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 100.0 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 100.0 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 100.0 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 100.0 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 100.0 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 100.0 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 100.0 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 100.0 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 100.0 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 100.0 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 100.0 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 100.0 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 100.0 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 100.0 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 100.0 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 100.0 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 100.0 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.98 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.98 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.98 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.98 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.98 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.98 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.98 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.98 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.98 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.97 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.97 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.97 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.97 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.97 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.97 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.97 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.97 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.97 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.97 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.97 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.97 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.97 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.97 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.97 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.97 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.96 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.96 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.93 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.96 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.95 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.95 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.95 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.95 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.95 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.95 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.95 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.95 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.95 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.95 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.95 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.95 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.94 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.94 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.94 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.94 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.94 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.93 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.93 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.93 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.93 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.93 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.92 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.92 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.92 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.91 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.91 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.91 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.91 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.91 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.9 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.9 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.9 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.9 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.89 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.89 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.89 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.89 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.89 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.89 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.88 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.88 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.88 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.88 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.88 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.88 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.88 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.88 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.88 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.87 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.87 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.87 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.87 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.87 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.87 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.87 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.87 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.87 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.87 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.86 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.86 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.86 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.86 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.86 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.86 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.85 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.84 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.84 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.84 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.84 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.84 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.84 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.83 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.82 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.82 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.81 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.79 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.79 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.79 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.78 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.78 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.78 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.76 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.75 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.75 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.72 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.71 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.71 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.71 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.7 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.7 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.67 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.67 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.67 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.66 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.65 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.61 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.6 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.6 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.58 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.57 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.54 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.54 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.52 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.39 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.37 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.2 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.14 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.09 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.07 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.05 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.99 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.98 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.92 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.89 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.88 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.86 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.78 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.63 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.6 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.44 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.4 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.37 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 98.27 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.23 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.13 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.12 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.05 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.95 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.81 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.76 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.68 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.66 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.65 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.62 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.53 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.49 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.48 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.42 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.41 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.41 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.39 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.39 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.39 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.39 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.37 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.37 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.33 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.33 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.31 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.26 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.25 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.24 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.23 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.22 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.22 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.22 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.21 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.2 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.2 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.2 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.2 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.19 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.18 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.18 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.18 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.17 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.16 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.15 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.13 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.13 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.13 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.13 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.13 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.12 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.12 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.12 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.11 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.11 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.1 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.1 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.1 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.09 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.09 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.08 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.08 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.08 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.08 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.08 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.07 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.07 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.07 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.06 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 97.06 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.06 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.06 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.06 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.05 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.05 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.05 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.05 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.05 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.04 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.04 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.03 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.03 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.02 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.02 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.02 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.02 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.02 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.01 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.01 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 96.99 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.99 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 96.98 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.98 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.98 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.98 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.98 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.97 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.97 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.96 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.96 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.96 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.95 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.95 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.95 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.94 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.94 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 96.93 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.92 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.92 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.91 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.91 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.91 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.91 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.91 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.89 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.89 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.89 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.89 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.87 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.86 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.86 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.86 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.85 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.85 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.84 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.84 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.82 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.82 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.81 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.81 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.81 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.79 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.78 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.78 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.77 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.77 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.76 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.76 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.76 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.75 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.75 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.74 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.74 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.73 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.73 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 96.73 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.72 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.72 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.71 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.71 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.71 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.7 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 96.7 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.69 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.69 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.68 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.68 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.68 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.67 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.67 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.66 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.66 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.65 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.64 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.63 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.63 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.62 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.61 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.6 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.6 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.59 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.58 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.57 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.55 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.55 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.52 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.51 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.5 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.49 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.49 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.46 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.46 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.46 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.45 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.45 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.44 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.44 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.43 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.41 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.41 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.39 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.36 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.32 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.26 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.26 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.25 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.24 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.24 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.22 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.21 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.2 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.2 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.19 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.19 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.18 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 96.17 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.16 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.15 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 96.15 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.15 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.14 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.13 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.12 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.11 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.1 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.09 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.07 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.07 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.03 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.02 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.02 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.01 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.01 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.0 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 95.99 | |
| 3uc9_A | 233 | Increased recombination centers protein 6; rossman | 95.96 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 95.96 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.96 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 95.95 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.95 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.95 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.93 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.93 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.91 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.9 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 95.9 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 95.9 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 95.89 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 95.89 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.88 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 95.88 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.88 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 95.87 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.87 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 95.87 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 95.87 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.86 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.85 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.85 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.84 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 95.83 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.81 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.81 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.81 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 95.81 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 95.78 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.76 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.74 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 95.74 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.73 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.72 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 95.71 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 95.69 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.68 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 95.66 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 95.64 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=227.79 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=130.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
+.+.+||+|+|++|||||||+++|+.+.|. .+.||++..+....... ++..+.+++|||+|++++..+++.|++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC-SSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe-cceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 346799999999999999999999999886 56889988777766655 6778999999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++|||++++++|+.+..|+..+... ...+.|++|||||+|+.+.. ..++.+.+ +...+++|++|||++|.
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~------a~~~~~~~~e~SAktg~ 161 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERK------AKELNVMFIETSAKAGY 161 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHH------HHHHTCEEEEEBTTTTB
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhH------HHHhCCeeEEEeCCCCc
Confidence 99999999999999999999888765 35689999999999997653 33344333 23456789999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKK 188 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~ 188 (202)
||+++|+.|++.+...
T Consensus 162 nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 162 NVKQLFRRVAAALPGM 177 (216)
T ss_dssp SHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987644
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=207.18 Aligned_cols=182 Identities=40% Similarity=0.695 Sum_probs=147.9
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||..++++++.+... ++.++|+++|++|||||||++++.+..+..+.++.+.....+.+ +.+.+.+||+||++.
T Consensus 1 mg~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 1 MGNIFSSMFDKLWGS-NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSY-----KNLKLNVWDLGGQTS 74 (183)
T ss_dssp -CHHHHHHHGGGTTC-SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEE-----TTEEEEEEEEC----
T ss_pred CchHHHHHHHHhcCC-CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEE-----CCEEEEEEECCCCHh
Confidence 888888887766432 67899999999999999999999988887778888866655544 358899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+...+..+++++|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ...+
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~-~~~~ 153 (183)
T 1moz_A 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL-KDRS 153 (183)
T ss_dssp CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTC-CSSC
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccc-cCCc
Confidence 999999999999999999999999999999999888877644568999999999999877666667666553322 3356
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++++||++|.|+++++++|.+.+.+++
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 154 WSIVASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp EEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred eEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 79999999999999999999999887543
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=206.40 Aligned_cols=175 Identities=39% Similarity=0.654 Sum_probs=143.5
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHh
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS 87 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 87 (202)
+++.+.....+.++|+++|++|||||||++++.+..+..+.||.|.+...+.+ ..+.+.+||+||++.+...+..
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~-----~~~~l~i~Dt~G~~~~~~~~~~ 79 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS-----QGFKLNVWDIGGQRKIRPYWRS 79 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEE-----TTEEEEEEECSSCGGGHHHHHH
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEE-----CCEEEEEEECCCCHHHHHHHHH
Confidence 44555555578899999999999999999999998877778888876655544 3678999999999999999999
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++++|++++|||+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ...++++++||
T Consensus 80 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 158 (181)
T 1fzq_A 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTI-RDRVWQIQSCS 158 (181)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSSCEEEEECC
T ss_pred HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhc-cCCceEEEEcc
Confidence 99999999999999999999999888888766534458999999999999877666666665543222 34567899999
Q ss_pred eecCCCHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~ 188 (202)
|++|.|++++|++|.+.+.++
T Consensus 159 a~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 159 ALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp TTTCTTHHHHHHHHHHTC---
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999877644
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=206.88 Aligned_cols=180 Identities=37% Similarity=0.634 Sum_probs=144.8
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||..++++++ +. ..+.++|+++|++|||||||+++|.+..+..+.+|.+.+...+.+ +.+.+.+||+||+++
T Consensus 1 m~~~~~~~~~-~~--~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 1 MGILFTRIWR-LF--NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-----NNTRFLMWDIGGQES 72 (187)
T ss_dssp -CHHHHHHHH-HH--TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEE-----TTEEEEEEECCC---
T ss_pred CchHHHHHHH-hc--CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEE-----CCEEEEEEECCCCHh
Confidence 8888888877 43 267899999999999999999999988887777888866655554 358899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+...+..+++++|++|+|||+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+....+ ...+
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~ 151 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI-KDHQ 151 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC-CSSC
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhh-cCCC
Confidence 999999999999999999999999999999999888877533458999999999999876666666666543322 3456
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++++||++|.|++++|++|.+.+....
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 152 WHIQACCALTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred cEEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999875443
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=208.05 Aligned_cols=183 Identities=39% Similarity=0.637 Sum_probs=148.7
Q ss_pred CCcchHHHHHHhhcCC-CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 1 MGKNSAAFFENLQASG-SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
||...+++++-+.-.. ++.++|+++|++|||||||++++.+..+..+.||.+.+...+.+ ..+.+.+|||||++
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQY-----KNISFEVWDLGGQT 77 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEE-----TTEEEEEEEECCSS
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEE-----CCEEEEEEECCCCH
Confidence 7877777766333333 78999999999999999999999988887777888866555543 46789999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcc
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMH 159 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 159 (202)
.+...+..+++++|++|+|+|+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ...
T Consensus 78 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~ 156 (189)
T 2x77_A 78 GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSI-MNR 156 (189)
T ss_dssp SSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSS
T ss_pred hHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhc-cCC
Confidence 9999999999999999999999999999999988888877655568999999999999887666666665543222 345
Q ss_pred eEEEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 160 LYYIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 160 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++++|||+++.|+++++++|.+.+.+++
T Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 157 TWTIVKSSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred ceEEEEccCCCccCHHHHHHHHHHHHHhcc
Confidence 679999999999999999999999887543
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=204.06 Aligned_cols=179 Identities=37% Similarity=0.642 Sum_probs=139.8
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
|| .++ +++++... ++.++|+++|++|||||||++++.+.....+.||.+.+...+.+ +.+.+.+|||||+++
T Consensus 3 mg-~~~-~~~~~~~~-~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~Dt~G~~~ 74 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQK-ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-----RGFKLNIWDVGGQKS 74 (186)
T ss_dssp -----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEE-----TTEEEEEEEECCSHH
T ss_pred cc-hhH-HHHhhccc-CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEE-----CCEEEEEEECCCCHh
Confidence 67 333 44444332 67899999999999999999999988866778888866655544 468899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+...+..+++++|++|+|||+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ...+
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~ 153 (186)
T 1ksh_A 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI-RSHH 153 (186)
T ss_dssp HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSSC
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhc-cCCc
Confidence 999999999999999999999999999999989888877544458999999999999887666666665543222 3457
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
++++++||++|.|++++|+++.+.+.++
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 154 WRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred eEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999987643
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=198.22 Aligned_cols=166 Identities=37% Similarity=0.657 Sum_probs=140.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.++.++|+++|++|+|||||++++.+..+..+.|+.+.+...+.+ ..+.+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTY-----KNLKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEE-----TTEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEE-----CCEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 456899999999999999999999999888788888876655554 367899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|+|||+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ...+++++++||++|.|++
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPAL-KDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC-TTSCEEEEECCTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhc-cCCceEEEECcCCCCcCHH
Confidence 999999999999999988888876544458999999999999887666666655543222 3457799999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 176 EGINELYQLILK 187 (202)
Q Consensus 176 ~l~~~l~~~~~~ 187 (202)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=197.70 Aligned_cols=163 Identities=48% Similarity=0.864 Sum_probs=134.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
+||+++|++|||||||++++.+..+..+.||.+.....+. ...+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEE-----CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEE-----ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999998888777788875544433 35678999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
|+++++++.....|+..+.......+.|+++|+||+|+.+.....++........ ....++++++|||++|.|++++|+
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-LRHRNWYIQATCATSGDGLYEGLD 154 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG-CSSCCEEEEECBTTTTBTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccc-ccCccEEEEEcccCCCcCHHHHHH
Confidence 9999999999998888887654456899999999999987766566655554322 234568899999999999999999
Q ss_pred HHHHHHHHH
Q psy1315 180 ELYQLILKK 188 (202)
Q Consensus 180 ~l~~~~~~~ 188 (202)
+|.+.+.++
T Consensus 155 ~l~~~i~~~ 163 (164)
T 1r8s_A 155 WLSNQLRNQ 163 (164)
T ss_dssp HHHHHC---
T ss_pred HHHHHHhhc
Confidence 999887543
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=205.07 Aligned_cols=175 Identities=33% Similarity=0.525 Sum_probs=140.9
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc--cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhc
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT--VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTR 90 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 90 (202)
.+.....++|+|+|++|||||||+++|.+..+... .+|.+.+...+ +...+.+.+|||||++.+...+..+++
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF-----EKGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE-----EETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE-----EeCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 44567899999999999999999999999988653 78888665544 356789999999999999999999999
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCC-------CCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEE
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN-------FNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (202)
++|++|+|||++++++|..+..|+..+...... .+.|+++|+||+|+.......++...+....+....++++
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEE
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEE
Confidence 999999999999999999999888887664211 3789999999999988877777777666544435577899
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHhhh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 192 (202)
++|||++|.|++++|++|.+.+.++..+.
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~ 194 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQSGKA 194 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC---
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999998775543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=201.14 Aligned_cols=163 Identities=33% Similarity=0.504 Sum_probs=135.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
.+.++|+++|++|||||||++++.+..+..+.+|.+.+...+.+ +.+.+.+||+||++.+...+..+++++|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAI-----GNIKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEE-----TTEEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEE-----CCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 46789999999999999999999999888888888876655544 3488999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchh------hcCcceEEEEEeeeec
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYE------LNNMHLYYIQATCAIT 170 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~ 170 (202)
+|||+++++++.....|+..+.......+.|+++|+||+|+......+++...+.... +....++++++|||++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVM 175 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCc
Confidence 9999999999999999988887654445899999999999987666666666654321 1234578999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQL 184 (202)
Q Consensus 171 ~~~v~~l~~~l~~~ 184 (202)
|.|++++|++|.+.
T Consensus 176 g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 176 RNGYLEAFQWLSQY 189 (190)
T ss_dssp TBSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998753
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=199.32 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=124.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--chhhHHhhhcCCCE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--LRPLWKSYTRCTDG 94 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~~~~~~d~ 94 (202)
++.++|+++|++|||||||+++|.+..+....++.+.+.....+.. ++..+.+.+||+||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTV-DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEE-TTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEE-CCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 4579999999999999999999999988776777777766555544 55667899999999887 56677888999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++|||++++.++..+..|+..+.......+.|+++|+||+|+.+... ..+.... +...+++++++||++|.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRAC------AVVFDCKFIETSATLQH 154 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHH------HHHHTSEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHH------HHHcCCeEEEEecCCCC
Confidence 999999999999999998888777654455899999999999976433 2222222 12345689999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
|++++|++|.+.+.+++.
T Consensus 155 gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 155 NVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp SHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 999999999998876543
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=198.33 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=111.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.+||+++|++|||||||++++.+..+....++.+.++.. .... ++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR-SIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEE-EEEE-TTEEEEEEEEECC---------------CCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-EEEE-CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 3689999999999999999999988776667777766542 2233 5677899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||+++++++..+..|+..+.......+.|+++|+||+|+.+... ....... ....+++++++||++|.|++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~ 152 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC------AVVFDCKFIETSAALHHNVQ 152 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHH------HHHTTCEEEECBGGGTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHH------HHHhCCcEEEeccCCCCCHH
Confidence 999999999999999998887765566899999999999976433 2222222 22345789999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 176 EGINELYQLILKK 188 (202)
Q Consensus 176 ~l~~~l~~~~~~~ 188 (202)
++|++|.+.+.++
T Consensus 153 ~l~~~l~~~~~~~ 165 (166)
T 3q72_A 153 ALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=199.74 Aligned_cols=169 Identities=39% Similarity=0.682 Sum_probs=136.7
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhh
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYT 89 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 89 (202)
++.++...+.++|+++|++|||||||+++|.+..+..+.++.+.+...+.+ +.+.+.+||+||++++...+..++
T Consensus 12 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~ 86 (181)
T 2h17_A 12 SGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-----NNTRFLMWDIGGQESLRSSWNTYY 86 (181)
T ss_dssp ---------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEE-----TTEEEEEEEESSSGGGTCGGGGGG
T ss_pred CCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEE-----CCEEEEEEECCCCHhHHHHHHHHh
Confidence 334455678999999999999999999999999887778888877665554 348899999999999999999999
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+++|++|+|||+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ...+++++++||+
T Consensus 87 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~~~Sa~ 165 (181)
T 2h17_A 87 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI-KDHQWHIQACCAL 165 (181)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSSCEEEEECBTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccc-cCCceEEEEccCC
Confidence 999999999999999999999999988876533458999999999999887666666666543322 3456799999999
Q ss_pred cCCCHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQL 184 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~ 184 (202)
+|.|++++|++|.+.
T Consensus 166 ~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 166 TGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTBTHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHhh
Confidence 999999999998764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=200.57 Aligned_cols=165 Identities=46% Similarity=0.834 Sum_probs=133.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
..+.++|+++|++|||||||++++.+..+..+.||.+.....+. ...+.+.+||+||++.+...+..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEE-----ETTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEE-----ECCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 35789999999999999999999999888777788775544433 3568999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|+|||+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+.... ....++++++|||++|.|++
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~-~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQH-LRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG-CSSCCEEEEECBTTTTBTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccc-ccCCceEEEECcCCCcCCHH
Confidence 99999999999999998988887654455899999999999987766666666554322 23457889999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 176 EGINELYQLIL 186 (202)
Q Consensus 176 ~l~~~l~~~~~ 186 (202)
++|++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=199.48 Aligned_cols=175 Identities=23% Similarity=0.319 Sum_probs=136.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
++.++|+++|++|||||||+++|.+..+. .+.++.+. ........ ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 79 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 46899999999999999999999988775 33444432 22222222 45677899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
++|||++++.++..+..|+..+.......+.|+++|+||+|+.... ......... ...+++++++||++|.|+
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 80 LCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA------RSYGIPFIETSAKTRQGV 153 (189)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH------HHHTCCEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH------HHcCCeEEEEeCCCCCCH
Confidence 9999999999999999998888776556689999999999997543 333333322 234568999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 175 HEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
+++|++|.+.+.+++.+.+.....+
T Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~~~~ 178 (189)
T 4dsu_A 154 DDAFYTLVREIRKHKEKMSKDGKKK 178 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSTT
T ss_pred HHHHHHHHHHHHHhhhhcccccccc
Confidence 9999999999988876665554443
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=200.76 Aligned_cols=163 Identities=37% Similarity=0.574 Sum_probs=127.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
.+.++|+++|++|||||||++++.+..+..+.+|.+.+...+.+ +.+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI-----AGMTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEE-----TTEEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEE-----CCEEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45789999999999999999999998887777888877655544 2388999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchh---------hc--CcceEEEEE
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYE---------LN--NMHLYYIQA 165 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~ 165 (202)
+|||+++++++.....|+..+.......+.|+++|+||+|+......+++...+.... +. ...+.++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM 177 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEE
Confidence 9999999999999999998887654445899999999999987666667766654322 11 125689999
Q ss_pred eeeecCCCHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQL 184 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~ 184 (202)
|||++|.|++++|++|.+.
T Consensus 178 ~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 178 CSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CBTTTTBSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=200.08 Aligned_cols=170 Identities=19% Similarity=0.249 Sum_probs=134.3
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhh
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSY 88 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 88 (202)
...++...+.++|+++|++|||||||+++|.+..+. .+.++.+..+ ...... ++..+.+.+||+||++.+...+..+
T Consensus 9 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~ 86 (183)
T 3kkq_A 9 SAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMREQY 86 (183)
T ss_dssp -----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHH
T ss_pred ccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHHHHHH
Confidence 445566778999999999999999999999988775 4456666544 333333 4567788999999999999999999
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
++++|++|+|||+++++++..+..|+..+.......+.|+++|+||+|+.+. ....+..... ...+++++++
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~ 160 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA------TKYNIPYIET 160 (183)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH------HHHTCCEEEE
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH------HHhCCeEEEe
Confidence 9999999999999999999999988888776545568999999999999763 3333333332 2335789999
Q ss_pred eee-cCCCHHHHHHHHHHHHHH
Q psy1315 167 CAI-TGDGLHEGINELYQLILK 187 (202)
Q Consensus 167 Sa~-~~~~v~~l~~~l~~~~~~ 187 (202)
||+ ++.|++++|++|.+.+.+
T Consensus 161 Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 161 SAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp BCSSSCBSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHhh
Confidence 999 999999999999998864
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=198.04 Aligned_cols=168 Identities=26% Similarity=0.517 Sum_probs=138.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
..++.++|+|+|++|||||||+++|.+..+. .+.+|.+.++..+ ....+.+.+||+||++.+...+..+++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI-----TKGNVTIKLWDIGGQPRFRSMWERYCRGVS 92 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE-----EETTEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE-----EeCCEEEEEEECCCCHhHHHHHHHHHccCC
Confidence 4567899999999999999999999988876 5678888776653 345789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++|+|||+++++++.....|+..+.......+.|+++|+||+|+.......++...+..... ...++++++|||++|.|
T Consensus 93 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~g~g 171 (188)
T 1zd9_A 93 AIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAI-QDREICCYSISCKEKDN 171 (188)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSSCEEEEECCTTTCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhh-ccCCeeEEEEECCCCCC
Confidence 99999999999999999999888876533458999999999999876655555555543222 34678899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKK 188 (202)
Q Consensus 174 v~~l~~~l~~~~~~~ 188 (202)
++++|++|.+.+.++
T Consensus 172 v~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 172 IDITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999877543
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=198.39 Aligned_cols=172 Identities=26% Similarity=0.337 Sum_probs=138.5
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhc
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTR 90 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 90 (202)
..+..+..++|+++|++|+|||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..+++
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 87 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYR 87 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTTHHHHHT
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHHh
Confidence 4556678899999999999999999999998875 45677776666666544 456688999999999999999999999
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeee
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
.+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.... ...... +...+++++++||
T Consensus 88 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa 160 (196)
T 3tkl_A 88 GAHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF------ADSLGIPFLETSA 160 (196)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHH------HHHTTCCEEEECT
T ss_pred hCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHH------HHHcCCcEEEEeC
Confidence 999999999999999999998888777655 3458999999999999765432 223222 2334568999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHhh
Q psy1315 169 ITGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
+++.|++++|++|.+.+.++...
T Consensus 161 ~~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 161 KNATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999876543
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=194.38 Aligned_cols=167 Identities=41% Similarity=0.627 Sum_probs=135.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCC-C-CCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQ-Y-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
...+.++|+++|++|||||||+++|.+.. + ..+.+|.+.....+.+ +.+.+.+||+||++.+...+..+++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS-----SSLSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEEC-----SSCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEE-----CCEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 45678999999999999999999999887 3 3567777766555544 347899999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCC--CCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDN--FNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
|++|+|||++++.++..+..|+..+...... .+.|+++|+||+|+.......++...+....+ ...+++++++||++
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENI-KDKPWHICASDAIK 170 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGC-CSSCEEEEECBTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhc-cCCceEEEEccCCC
Confidence 9999999999999999999888888775433 58999999999999877666677666543332 23478999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLILK 187 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~ 187 (202)
|.|++++|++|.+.+.+
T Consensus 171 ~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TBTHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999987753
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=200.46 Aligned_cols=169 Identities=22% Similarity=0.280 Sum_probs=136.6
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
...++..++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRS 98 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTT
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHHhc
Confidence 345678899999999999999999999988875 55677777666555544 4566899999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...++++++|||+
T Consensus 99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~ 171 (201)
T 2ew1_A 99 ANALILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFS------EAQDMYYLETSAK 171 (201)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH------HHHTCCEEECCTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH------HHcCCEEEEEeCC
Confidence 99999999999999999988888776654 34579999999999997532 233333322 2345689999999
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~ 189 (202)
+|.|++++|++|.+.+.++.
T Consensus 172 ~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999887654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-34 Score=199.31 Aligned_cols=169 Identities=24% Similarity=0.309 Sum_probs=109.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
..+..++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAM 82 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCS
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence 4567899999999999999999999988775 45677776665544443 456689999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||+++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~ 155 (183)
T 2fu5_C 83 GIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA------LDYGIKFMETSAKAN 155 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH------HHHTCEEEECCC---
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHH------HHcCCeEEEEeCCCC
Confidence 999999999999999998888777654 34579999999999997643 233333332 234578999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q psy1315 172 DGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~~ 191 (202)
.|++++|++|.+.+.++..+
T Consensus 156 ~~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 156 INVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 99999999999998766543
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-33 Score=199.24 Aligned_cols=171 Identities=25% Similarity=0.364 Sum_probs=139.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.++..++|+|+|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSH 82 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHhccCCC
Confidence 4567899999999999999999999998875 45677776666555544 456789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ......... ...+++++++||++|
T Consensus 83 ~vilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~g 155 (206)
T 2bcg_Y 83 GIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA------DANKMPFLETSALDS 155 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH------HHTTCCEEECCTTTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH------HHcCCeEEEEeCCCC
Confidence 999999999999999998888777654 34579999999999997643 233333322 234568999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh
Q psy1315 172 DGLHEGINELYQLILKKRKLQK 193 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~~~~ 193 (202)
.|++++|++|.+.+.+......
T Consensus 156 ~gi~~l~~~l~~~i~~~~~~~~ 177 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIKESMSQQN 177 (206)
T ss_dssp TTHHHHHHHHHHHHHHHCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999987654443
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=197.06 Aligned_cols=171 Identities=22% Similarity=0.316 Sum_probs=137.3
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhc
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTR 90 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 90 (202)
+....++.++|+++|++|||||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..+++
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 81 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYR 81 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence 4456678899999999999999999999988875 45667666665555544 455689999999999999999999999
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ...+..... ...+++++++||
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa 154 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFA------QENELMFLETSA 154 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEECCT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH------HHcCCEEEEecC
Confidence 999999999999999999988888766554 34589999999999996532 223333322 334578999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHh
Q psy1315 169 ITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+++.|++++|+++.+.+.++..
T Consensus 155 ~~~~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 155 LTGENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999998876543
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=196.63 Aligned_cols=172 Identities=19% Similarity=0.289 Sum_probs=138.0
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhh
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSY 88 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 88 (202)
......+++.++|+|+|++|||||||+++|.+..+. .+.++.+.++....... ....+.+.+||+||.+.+...+..+
T Consensus 16 ~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~ 94 (193)
T 2oil_A 16 PRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLERYRAITSAY 94 (193)
T ss_dssp ----CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE-TTEEEEEEEEEESCCCTTCTTHHHH
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHH
Confidence 334456778899999999999999999999998876 45677777666555544 4567899999999999999999999
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
++++|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ......... ...+++++++
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~ 167 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFA------ENNGLLFLET 167 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEEE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHH------HHcCCEEEEE
Confidence 99999999999999999999888888777654 34589999999999997542 233333322 2345789999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
||+++.|++++|++|.+.+.++.
T Consensus 168 Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 168 SALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999887654
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=195.97 Aligned_cols=170 Identities=25% Similarity=0.337 Sum_probs=135.5
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
....++.++|+++|++|||||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..+++.
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ---CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred ccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 345678899999999999999999999998875 55677776666555544 4556899999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+|++|+|||++++.++..+..|+..+... ..+.|+++|+||+|+.+... ........ ...+++++++||+
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~ 153 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFA------GQMGIQLFETSAK 153 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCCEEECBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHH------HHcCCeEEEEECC
Confidence 99999999999999999998888877664 34799999999999876432 22333222 2345689999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhh
Q psy1315 170 TGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
+|.|++++|++|.+.+.+.+.+
T Consensus 154 ~~~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998876653
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=199.65 Aligned_cols=169 Identities=23% Similarity=0.319 Sum_probs=130.1
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
....+..++|+++|++|||||||+++|.+..+. .+.+|.+.++....+.. ++..+.+.+||+||++++...+..++++
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRS 101 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence 345677899999999999999999999988875 45677776555544443 4556899999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceE-EEEEeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLY-YIQATCA 168 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 168 (202)
+|++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+. ....+..... ...++ ++++|||
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~~SA 174 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRKY-AGSNIVQLLIGNKSDLSELREVSLAEAQSLA------EHYDILCAIETSA 174 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCSEEEECBT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCccccccccCHHHHHHHH------HHcCCCEEEEEeC
Confidence 99999999999999999988888777665 3458999999999999753 3333444432 23355 8999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~ 189 (202)
+++.|++++|++|.+.+.++.
T Consensus 175 ~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999987654
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=196.00 Aligned_cols=170 Identities=19% Similarity=0.309 Sum_probs=128.4
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
..++..++|+++|++|+|||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..++++
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGG
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 45678899999999999999999999998874 45677777766655444 4567889999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ......... ...+++++++||+
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~ 156 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKLA------KEYGLPFMETSAK 156 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECCSTTSCCCSCHHHHHHHH------HHHTCCEEECCTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccCcccccCHHHHHHHH------HHcCCeEEEEeCC
Confidence 99999999999999999888888777654 23589999999999997643 233333322 2335689999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhh
Q psy1315 170 TGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
++.|++++|+++.+.+.+++.+
T Consensus 157 ~~~gi~~l~~~l~~~~~~~~~~ 178 (180)
T 2g6b_A 157 TGLNVDLAFTAIAKELKRRSMK 178 (180)
T ss_dssp TCTTHHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998766543
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=197.35 Aligned_cols=168 Identities=19% Similarity=0.213 Sum_probs=132.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+.++|+++|++|+|||||+++|.+..+. .+.++.+.++ ...... ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 46899999999999999999999977765 5567777665 333333 45668899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++|||++++++++.+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||+++.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~ 155 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA------ESWNAAFLESSAKENQT 155 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH------HHTTCEEEECCTTSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH------HHhCCcEEEEecCCCCC
Confidence 9999999999999999998888776556689999999999996543 233333332 33466899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy1315 174 LHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~~~~ 192 (202)
++++|++|.+.+.+++...
T Consensus 156 v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 156 AVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp HHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 9999999999998766443
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=196.71 Aligned_cols=168 Identities=19% Similarity=0.296 Sum_probs=134.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+|+|++|||||||+++|.+..+. .+.++.+..+. ..+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEE-CCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 4457899999999999999999999988775 44566554432 22222 455678999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~g 161 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA------EQWNVNYVETSAKTR 161 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCEEEEECTTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH------HHhCCeEEEEeCCCC
Confidence 999999999999999999888888776555689999999999997643 333444332 234568999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy1315 172 DGLHEGINELYQLILKKRK 190 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~ 190 (202)
.|++++|++|.+.+.+++.
T Consensus 162 ~gi~~l~~~l~~~i~~~~~ 180 (206)
T 2bov_A 162 ANVDKVFFDLMREIRARKM 180 (206)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHccc
Confidence 9999999999999877644
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=194.58 Aligned_cols=166 Identities=22% Similarity=0.310 Sum_probs=134.3
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
......++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. +...+.+.+||+||++.+...+..+++++
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 45667899999999999999999999988875 45677776666555544 45678899999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~ 161 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFA------EENGLLFLEASAKT 161 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECCTTT
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH------HHcCCEEEEEeCCC
Confidence 9999999999999999988887776654 34589999999999996532 233344332 23457899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLILK 187 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~ 187 (202)
+.|++++|++|.+.+.+
T Consensus 162 ~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 162 GENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CTTHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987753
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=197.95 Aligned_cols=172 Identities=16% Similarity=0.173 Sum_probs=128.4
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchh-hHHhhh
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP-LWKSYT 89 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~ 89 (202)
.++.....++|+++|++|||||||+++|.+..+. ...++.+.......+.+ ++..+.+.+||++|++.+.. ++..++
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~ 94 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCL 94 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGGHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCccchhhhHHHhh
Confidence 3445667899999999999999999999765432 23344444444433333 56678899999999987765 788889
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+.+|++|+|||++++.+|..+..|+..+.......+.|+++|+||+|+.... ...+.+... ...++++++||
T Consensus 95 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a------~~~~~~~~e~S 168 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA------GTLSCKHIETS 168 (195)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH------HHTTCEEEEEB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH------HHhCCEEEEEc
Confidence 9999999999999999999999998887765434589999999999997543 233333322 22346899999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHh
Q psy1315 168 AITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+++.|++++|+++++.+.+++.
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999998875543
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=195.17 Aligned_cols=168 Identities=26% Similarity=0.307 Sum_probs=134.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-----------ccccccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-----------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
..+..+||+++|++|||||||++.+.+..... +.+|.+.++........++..+.+.+|||||++.+..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 45678999999999999999997766544333 2346666666555422256778999999999999999
Q ss_pred hHHhhhcCCCEEEEEEeCC------CchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC
Q psy1315 84 LWKSYTRCTDGIIFVIDST------DVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN 157 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 157 (202)
.+..+++++|++|+|||++ +.+++..+..|+..+.. ...+.|+++|+||+|+.+.....+......
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~------ 161 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDALPVEMVRAVVD------ 161 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTCCCHHHHHHHHC------
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccccCHHHHHHHHH------
Confidence 9999999999999999999 55677777777776632 346899999999999988777777766553
Q ss_pred cceE-EEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 158 MHLY-YIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 158 ~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
..++ +++++||++|.|++++|++|.+.+.++..
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 3455 89999999999999999999999987654
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=194.62 Aligned_cols=171 Identities=22% Similarity=0.318 Sum_probs=136.8
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-Cccccccceee-Eeeccccccc---------ceEEEEEEcCCCCCc
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCE-KVKGQIGKCK---------GINFLIWDVGGQEKL 81 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~D~~G~~~~ 81 (202)
.+.++..++|+|+|++|||||||+++|.+..+. .+.++.+.++. ...... ... .+.+.+||+||++.+
T Consensus 5 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 83 (195)
T 3bc1_A 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLERF 83 (195)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGGG
T ss_pred ccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHHH
Confidence 345678899999999999999999999988775 45677776665 333322 223 678999999999999
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcc
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMH 159 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 159 (202)
...+..+++++|++|+|||++++.++..+..|+..+.......+.|+++|+||+|+.+. .......... ...
T Consensus 84 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~ 157 (195)
T 3bc1_A 84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA------EKY 157 (195)
T ss_dssp HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH------HHH
T ss_pred HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH------HHc
Confidence 99999999999999999999999999998888887776544468999999999999753 2333343332 233
Q ss_pred eEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 160 LYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 160 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+++++++||+++.|++++|++|.+.+.++..
T Consensus 158 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 158 GIPYFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 5689999999999999999999999876654
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=196.51 Aligned_cols=168 Identities=25% Similarity=0.323 Sum_probs=133.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 4668899999999999999999999998875 44566676665555544 456689999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||+++
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~ 168 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFA------REHGLIFMETSAKTA 168 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCEEEEECTTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHH------HHcCCEEEEEeCCCC
Confidence 999999999999999988888777654 34589999999999996532 233333322 234568999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy1315 172 DGLHEGINELYQLILKKRK 190 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~ 190 (202)
.|++++|++|.+.+.++..
T Consensus 169 ~gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 169 CNVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999876543
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-33 Score=194.21 Aligned_cols=169 Identities=19% Similarity=0.272 Sum_probs=135.0
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
....+.++|+++|++|||||||+++|.+..+. .+.++.+..+. ..... ++..+.+.+||+||++++...+..+++.+
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSV-DGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 34567899999999999999999999988775 45566665544 22222 44567899999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+... ....... +...+++++++||++
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~ 155 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF------GASHHVAYFEASAKL 155 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH------HHHTTCEEEECBTTT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH------HHHcCCeEEEecCCC
Confidence 99999999999999999998888886654556899999999999976432 2333322 123467899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q psy1315 171 GDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~~ 190 (202)
|.|++++|++|.+.+.+++.
T Consensus 156 ~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 156 RLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp TBSHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999876654
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=199.29 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=129.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.++|+|+|++|||||||+++|.+..+. .+.++.+..+ ...... .+..+.+.+||+||++.+...+..+++.+|+
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTL-GKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 357899999999999999999999998876 4456666554 333333 4567899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||+++++++..+..|+..+.......+.|+++|+||+|+..... ....... +...+++++++||++|.
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~~~ 172 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKL------AESWGATFMESSARENQ 172 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHH------HHHHTCEEEECCTTCHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHH------HHHhCCeEEEEeCCCCC
Confidence 999999999999999999998887765556899999999999975433 2233222 23345689999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q psy1315 173 GLHEGINELYQLILKKRKL 191 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~~ 191 (202)
|++++|++|.+.+.+.+..
T Consensus 173 ~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 173 LTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhhhhh
Confidence 9999999999998776554
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=195.14 Aligned_cols=167 Identities=23% Similarity=0.283 Sum_probs=136.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.+...++|+|+|++|||||||+++|.+..+. .+.++.+.++....+.. +...+.+.+||+||++.+...+..+++++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 3557899999999999999999999998875 45677777766555544 456789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+... ........ ...+++++++||++|
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~ 155 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLA------DHLGFEFFEASAKDN 155 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHH------HHHTCEEEECBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHH------HHCCCeEEEEECCCC
Confidence 999999999999999988888777654 345899999999999976432 33333322 233568999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|++|.+.+.++.
T Consensus 156 ~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 156 INVKQTFERLVDVICEKM 173 (203)
T ss_dssp BSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999887653
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=196.48 Aligned_cols=168 Identities=23% Similarity=0.286 Sum_probs=136.2
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
++.+++.++|+++|++|+|||||+++|.+..+. .+.++.+.++....... ....+.+.+||+||++.+...+..+++.
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC-GNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC-SSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe-CCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 345678999999999999999999999998875 66788888777666655 5577899999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+. ....+..... ...+++++++||+
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~ 168 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYA------ESIGAIVVETSAK 168 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HTTTCEEEECBTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHH------HHcCCEEEEEeCC
Confidence 99999999999999999998888777654 3458999999999999753 2333444432 2345789999999
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILKK 188 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~ 188 (202)
++.|++++|++|.+.+.+.
T Consensus 169 ~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 169 NAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TTBSHHHHHHHHHHTCC--
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 9999999999999877543
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=198.47 Aligned_cols=168 Identities=15% Similarity=0.173 Sum_probs=125.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC--CCccccccceeeEeecccccccceEEEEEEcCCCCC-chhhHHhhhcC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY--LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-LRPLWKSYTRC 91 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~ 91 (202)
.....+||+++|++|||||||+++|.+... ....++.+.++....+.+ ++..+.+.+|||+|++. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 345679999999999999999999996443 344455666655544444 56677889999999876 45667778899
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+|++|+|||++++++|..+..|+..+.......+.|+++|+||+|+..... ..+.+. ++...++++++|||+
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~------~a~~~~~~~~e~SAk 185 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA------CAVVFDCKFIETSAA 185 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH------HHHHHTCEEEECBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH------HHHHcCCEEEEEeCC
Confidence 999999999999999999988887776542334799999999999975322 222222 112345789999999
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~ 189 (202)
+|.|++++|++|.+.+..++
T Consensus 186 ~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 186 VQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp TTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999886443
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=192.81 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=118.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchh-hHHhhhcCCCEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP-LWKSYTRCTDGII 96 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~d~~i 96 (202)
.+||+++|++|||||||+++|.+..+. ...++.+.......+.. ++..+.+.+||+||++.+.. .+..+++++|+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-TTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 589999999999999999999876654 22233333333333333 56678999999999988876 7778889999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||+++++++..+..|+..+.......+.|+++|+||+|+.+.. ......... ...+++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA------GTLSCKHIETSAALHHNT 154 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECBTTTTBSH
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH------HHcCCcEEEecCccCCCH
Confidence 999999999999999999988876555689999999999997432 333333322 334668999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKK 188 (202)
Q Consensus 175 ~~l~~~l~~~~~~~ 188 (202)
+++|+++.+.+..+
T Consensus 155 ~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 155 RELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=199.76 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=137.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.++..+||+|+|++|||||||+++|.+..+. .+.++.+.+........ ....+.+.+||+||++.+...+..+++++|
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE-TTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 4567899999999999999999999988875 45677777766666654 567789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ......... ...+++++++||++|
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~ 170 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLA------EQLGFDFFEASAKEN 170 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCEEEECBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH------HHcCCeEEEEECCCC
Confidence 999999999999999988887777664 45589999999999996543 223333322 334568999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|++|.+.+.++.
T Consensus 171 ~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 171 ISVRQAFERLVDAICDKM 188 (191)
T ss_dssp BSHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999887653
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=191.90 Aligned_cols=163 Identities=19% Similarity=0.286 Sum_probs=126.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.+||+++|++|||||||++++++..+.. +.++.+... ..+.. ++..+.+.+|||+|++.+. +++++|
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFK--KEIVV-DGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEE--EEEEE-TTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEE--EEEEE-CCEEEEEEEEECCCChhhh-----eecCCC
Confidence 45679999999999999999999999988764 455533222 33333 5667889999999998776 778899
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC----CcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN----AIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
++++|||++++.++..+..|+..+.......+.|+++|+||+|+.. .....+...... .....++++|||+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~Sa~ 162 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST-----DLKRCTYYETCAT 162 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH-----HTTTCEEEEEBTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH-----HcCCCeEEEecCC
Confidence 9999999999999999998888887764445899999999999942 223333333321 1223789999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q psy1315 170 TGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+|.|++++|+++.+.+.++++
T Consensus 163 ~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 163 YGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp TTBTHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999998886654
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=193.64 Aligned_cols=165 Identities=22% Similarity=0.302 Sum_probs=134.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.+..++|+++|++|+|||||+++|.+..+. .+.++.+.++....... ....+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEE-TTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEE-CCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 456799999999999999999999998875 45677777766555544 4567899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+... ....+... ...+++++++||++|.
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~g~ 170 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLA------DDLGFEFFEASAKENI 170 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHH------HHcCCeEEEEECCCCC
Confidence 99999999999999988888776654 345899999999999975432 23333322 2335689999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKK 188 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~ 188 (202)
|++++|++|.+.+.++
T Consensus 171 gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 171 NVKQVFERLVDVICEK 186 (189)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988654
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=192.56 Aligned_cols=167 Identities=25% Similarity=0.304 Sum_probs=133.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....++|+++|++|+|||||+++|.+..+. ...++.+.++....+.. +...+.+.+||+||++.+...+..+++.+|
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEE-TTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 4567899999999999999999999988876 34577776666655544 456789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~g 159 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTYA------QENGLFFMETSAKTA 159 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH------HHTTCEEEECCSSSC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHHHHHH------HHcCCEEEEEECCCC
Confidence 999999999999999988888877765 34589999999999996543 233344332 234568999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|++|.+.+.+.+
T Consensus 160 ~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 160 TNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp TTHHHHHHHHHHTCC---
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999998775543
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=194.30 Aligned_cols=169 Identities=24% Similarity=0.327 Sum_probs=138.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. +...+.+.+||+||++.+...+..+++++|
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 3456799999999999999999999998875 56777777766655544 556789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
++|+|||++++.++..+..|+..+.......+.|+++|+||+|+.... ......... ...+++++++||+++.
T Consensus 90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA------RKHSMLFIEASAKTCD 163 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH------HHTTCEEEECCTTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH------HHcCCEEEEecCCCCC
Confidence 999999999999999988888887765444689999999999995432 233333322 2345789999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
|++++|++|.+.+.+...
T Consensus 164 gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 164 GVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp THHHHHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHhhhh
Confidence 999999999999876543
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=188.83 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=125.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
.+.+||+++|++|||||||+++|.+..+..+.+|.+..+ ...+.. ++..+.+.+||+||+++ ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLV-DGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEE-TTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEE-CCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 467999999999999999999999998877778777544 333333 45678899999999876 46788899999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHc--cCCCCCCcEEEEeeCCCCCC----CcCHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIK--NNDNFNVPILILANKQDLPN----AIQIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~--~~~~~~~pvivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
+|||+++++++..+..|+..+.. .....+.|+++|+||+|+.. .....+...... ...+++++++||++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~ 152 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA-----DMKRCSYYETXATY 152 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH-----HHSSEEEEEEBTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH-----hhcCCeEEEEeccc
Confidence 99999999999999886543332 22235899999999999942 223333333221 12367999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q psy1315 171 GDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~~~ 191 (202)
|.|++++|+++.+.+.+.++.
T Consensus 153 ~~~i~~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 153 GLNVDRVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp TBTHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999998876553
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=195.19 Aligned_cols=168 Identities=23% Similarity=0.326 Sum_probs=129.6
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
++.....++|+++|++|||||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..++++
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRS 98 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 445678899999999999999999999988875 45677776666655544 4556889999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+... ..+.+.... ...+.+++++||+
T Consensus 99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~ 172 (192)
T 2il1_A 99 AKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQ-----QITGMRFCEASAK 172 (192)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TSTTCEEEECBTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH-----hcCCCeEEEEeCC
Confidence 99999999999999999988777665544 445899999999999975432 333333221 1236789999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILK 187 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~ 187 (202)
+|.|++++|++|.+.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=190.50 Aligned_cols=161 Identities=23% Similarity=0.286 Sum_probs=131.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+.++|+++|++|+|||||+++|.+..+. .+.++.+.++....... +...+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35799999999999999999999988775 45677777766555544 45678999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYA------DDNSLLFMETSAKTSMN 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccccCHHHHHHHH------HHcCCeEEEEeCCCCCC
Confidence 9999999999999998888877665 34589999999999996542 233333322 23467899999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLI 185 (202)
Q Consensus 174 v~~l~~~l~~~~ 185 (202)
++++|++|.+.+
T Consensus 156 i~~l~~~i~~~~ 167 (170)
T 1r2q_A 156 VNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=189.72 Aligned_cols=162 Identities=24% Similarity=0.302 Sum_probs=132.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.++|+++|++|+|||||++++.+..+. .+.++.+.++....... ....+.+.+||+||.+.+...+..+++++|+
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 456799999999999999999999998875 55788887776665554 4566889999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++.++..+..|+..+... ..+..|+++|+||+|+.+... ........ ...+.+++++||+++.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA------DSIHAIFVETSAKNAI 154 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECBTTTTB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH------HHcCCEEEEEeCCCCc
Confidence 99999999999999988887777654 456899999999999975432 23333322 2345789999999999
Q ss_pred CHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLI 185 (202)
Q Consensus 173 ~v~~l~~~l~~~~ 185 (202)
|++++|++|.+.+
T Consensus 155 ~i~~l~~~i~~~i 167 (170)
T 1z0j_A 155 NINELFIEISRRI 167 (170)
T ss_dssp SHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=198.15 Aligned_cols=171 Identities=22% Similarity=0.316 Sum_probs=128.4
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhc
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTR 90 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 90 (202)
....+++.++|+|+|++|||||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..+++
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 96 (200)
T 2o52_A 18 GSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYR 96 (200)
T ss_dssp ----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHHHT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHHhc
Confidence 3445778999999999999999999999988775 45667676655555544 455689999999999888888999999
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
.+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+..... ..+..... ...+++++++||
T Consensus 97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~SA 169 (200)
T 2o52_A 97 GAAGALLVYDITSRETYNSLAAWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFA------QENELMFLETSA 169 (200)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-TCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEEECT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCCcccccccCHHHHHHHH------HHcCCEEEEEeC
Confidence 999999999999999999988888777654 345899999999999965432 23333322 234578999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHh
Q psy1315 169 ITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
++|.|++++|++|.+.+.++..
T Consensus 170 ~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 170 LTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999886654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=192.08 Aligned_cols=164 Identities=27% Similarity=0.334 Sum_probs=126.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.++.++|+++|++|+|||||++++.+..+. ...++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 457899999999999999999999988775 45677776666555544 5667899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~ 154 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYA------ESVGAKHYHTSAKQNK 154 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEEEBTTTTB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHH------HHcCCeEEEecCCCCC
Confidence 99999999999999988887766543 23478999999999997542 333333332 2345789999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILK 187 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~ 187 (202)
|++++|++|.+.+.+
T Consensus 155 gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 155 GIEELFLDLCKRMIE 169 (170)
T ss_dssp SHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=199.63 Aligned_cols=176 Identities=23% Similarity=0.367 Sum_probs=134.4
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeeccccccc----------ceEEEEEEcC
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCK----------GINFLIWDVG 76 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~ 76 (202)
........++..++|+|+|++|||||||+++|.+..+. .+.++.+..+....+.. +.. .+.+.+||+|
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~Dt~ 92 (217)
T 2f7s_A 14 LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY-NAQGPNGSSGKAFKVHLQLWDTA 92 (217)
T ss_dssp -------CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEE-EC-------CCEEEEEEEEEEEE
T ss_pred cCcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEE-CCccccccccCceeEEEEEEECC
Confidence 33444556788999999999999999999999988775 44566665554444433 223 6789999999
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchh
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYE 154 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~ 154 (202)
|++.+...+..+++.+|++|+|||++++.++..+..|+..+.......+.|+++|+||+|+..... ........
T Consensus 93 G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~---- 168 (217)
T 2f7s_A 93 GQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA---- 168 (217)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred CcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH----
Confidence 999999999999999999999999999999999888877766543336899999999999975432 33333322
Q ss_pred hcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 155 LNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
...+++++++||+++.|++++|++|.+.+.++..
T Consensus 169 --~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 169 --DKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp --HHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred --HHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 2345689999999999999999999998876543
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=188.99 Aligned_cols=162 Identities=19% Similarity=0.256 Sum_probs=129.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.++|+++|++|||||||++++.+..+. .+.++.+.... ..... ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 4689999999999999999999988775 44566654443 22323 556788999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++.++..+..|+..+.......+.|+++|+||+|+.+... ..+...... ...+.+++++||++|.|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-----QWCNCAFLESSAKSKINV 154 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTSCEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH-----HccCCcEEEecCCCCCCH
Confidence 9999999999999888887776654456899999999999975432 333333221 123678999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 175 HEGINELYQLIL 186 (202)
Q Consensus 175 ~~l~~~l~~~~~ 186 (202)
++++++|.+.+.
T Consensus 155 ~~l~~~l~~~i~ 166 (167)
T 1c1y_A 155 NEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988763
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-33 Score=191.66 Aligned_cols=160 Identities=24% Similarity=0.348 Sum_probs=130.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.++|+++|++|||||||++++.+..+. .+.++.+.+........ ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 4689999999999999999999988875 46678787766555544 556789999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-----cCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-----IQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+... ......... +...+++++++||++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~~ 153 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDXLQEGGERKVAREEGEKL------AEEKGLLFFETSAKTG 153 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH------HHHHTCEEEECCTTTC
T ss_pred EEEecCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCCccccccccCCCHHHHHHH------HHHcCCEEEEEeCCCC
Confidence 999999999999998888777665 3458999999999999653 222222222 1234578999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLI 185 (202)
Q Consensus 172 ~~v~~l~~~l~~~~ 185 (202)
.|++++|++|.+.+
T Consensus 154 ~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 154 ENVNDVFLGIGEKI 167 (170)
T ss_dssp TTHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=191.62 Aligned_cols=168 Identities=20% Similarity=0.317 Sum_probs=133.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+++|++|+|||||+++|.+..+. .+.++.+..... .+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEE-EEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEE-EEEE-CCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3456899999999999999999999988775 445555544422 2222 455678999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..... ...+++++++||+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~ 165 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA------EQWNVNYVETSAKTR 165 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEECCTTTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH------HHcCCeEEEeCCCCC
Confidence 99999999999999999988888777655558999999999999654 2333444332 234568999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy1315 172 DGLHEGINELYQLILKKRK 190 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~ 190 (202)
.|++++|++|.+.+.+++.
T Consensus 166 ~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 166 ANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc
Confidence 9999999999999987654
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=194.30 Aligned_cols=166 Identities=24% Similarity=0.358 Sum_probs=130.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCch-hhHHhhhcCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-PLWKSYTRCT 92 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~ 92 (202)
...+.++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+. ..+..+++++
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 3457899999999999999999999988875 45677776666555544 4556899999999999888 8899999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
|++|+|||++++.++..+..|+..+.......+.|+++|+||+|+.+.. .....+... ...+++++++||++
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~ 168 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA------DTHSMPLFETSAKN 168 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCCEEECCSSS
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH------HHcCCEEEEEeCCc
Confidence 9999999999999999999888887776445689999999999996543 233333322 23456899999999
Q ss_pred C---CCHHHHHHHHHHHHHH
Q psy1315 171 G---DGLHEGINELYQLILK 187 (202)
Q Consensus 171 ~---~~v~~l~~~l~~~~~~ 187 (202)
+ .|++++|++|.+.+.+
T Consensus 169 ~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 169 PNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGGGSCHHHHHHHHC-----
T ss_pred CCcccCHHHHHHHHHHHHhh
Confidence 9 9999999999887653
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=192.01 Aligned_cols=170 Identities=22% Similarity=0.289 Sum_probs=122.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+++|++|||||||++++.+..+. .+.++.+.+.....+.......+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 3567899999999999999999999998875 556777766666555542355689999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccC---CCCCCcEEEEeeCCCCCCCc---CHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNN---DNFNVPILILANKQDLPNAI---QIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~pvivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
++|+|||++++.++..+..|+..+.... ...+.|+++|+||+|+.... ...+...... ...+.+++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~~S 158 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK-----SLGDIPLFLTS 158 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH-----HTTSCCEEEEB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH-----hcCCCeEEEEe
Confidence 9999999999999999888877765542 22588999999999995432 2333333221 13467899999
Q ss_pred eecCCCHHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~ 189 (202)
|++|.|++++|++|.+.+.+++
T Consensus 159 a~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 159 AKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=188.67 Aligned_cols=162 Identities=20% Similarity=0.313 Sum_probs=127.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.++|+++|++|+|||||++++.+..+. .+.++.+..... .... ++..+.+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEE-EEEE-CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 5789999999999999999999988775 445555544432 2222 456678999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||+++++++..+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi 154 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA------DQWNVNYVETSAKTRANV 154 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH------HHHTCEEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH------HHcCCeEEEeCCCCCCCH
Confidence 999999999999999888888776555589999999999996542 333343332 234568999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILK 187 (202)
Q Consensus 175 ~~l~~~l~~~~~~ 187 (202)
+++|+++.+.+.+
T Consensus 155 ~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 155 DKVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=189.01 Aligned_cols=162 Identities=18% Similarity=0.226 Sum_probs=128.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.++|+++|++|+|||||++++.+..+. .+.++.+... ...... ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4689999999999999999999988775 3445544332 333333 455678999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++.++..+..|+..+.......+.|+++|+||+|+.+... ........ ...+++++++||++|.|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi 153 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA------EEWGCPFMETSAKSKTMV 153 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH------HHHTSCEEEECTTCHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH------HHhCCCEEEecCCCCcCH
Confidence 9999999999999998888887765556899999999999865432 22333322 223568999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILK 187 (202)
Q Consensus 175 ~~l~~~l~~~~~~ 187 (202)
++++++|.+.+.+
T Consensus 154 ~~l~~~l~~~~~~ 166 (167)
T 1kao_A 154 DELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=189.79 Aligned_cols=163 Identities=28% Similarity=0.381 Sum_probs=127.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..++|+++|++|+|||||++++.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 4689999999999999999999988875 45677776665555544 456788999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ......... ...+++++++||++|.|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gv~ 153 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALA------KELGIPFIESSAKNDDNVN 153 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHH------HHHTCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCCcCccCHHHHHHHH------HHcCCeEEEEECCCCCCHH
Confidence 999999999999888888777664 34589999999999995432 233333322 2335689999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 176 EGINELYQLILKK 188 (202)
Q Consensus 176 ~l~~~l~~~~~~~ 188 (202)
++|++|.+.+.++
T Consensus 154 ~l~~~l~~~~~~~ 166 (170)
T 1g16_A 154 EIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=192.29 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=130.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.++|+++|++|||||||+++|.+..+. .+.++.+.......+...+...+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 456899999999999999999999988875 4567777666555554422246899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCC-CCCCc-EEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNND-NFNVP-ILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p-vivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
+|+|||++++.++..+..|+..+..... ....| +++|+||+|+.+.. ...+..... ...+++++++||++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~ 156 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC------QENGFSSHFVSAKT 156 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH------HHHTCEEEEECTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH------HHcCCcEEEEeCCC
Confidence 9999999999999988877776654211 11345 89999999997532 233333322 23457899999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLILKKR 189 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~ 189 (202)
|.|++++|++|.+.+.+.+
T Consensus 157 ~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 157 GDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp CTTHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhhh
Confidence 9999999999999876543
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=199.66 Aligned_cols=178 Identities=22% Similarity=0.203 Sum_probs=140.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....++|+++|++|||||||+++|.+..+. .+.++.+.+..........+..+.+.+||+||++.+...+..+++++|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 4567899999999999999999999988775 446777777766666443344488999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ........ ....+++++++||++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~g 159 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEV------LKGKNYEYFEISAKTA 159 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHHH------TTTCCCEEEEEBTTTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHH------HHHcCCcEEEEecCCC
Confidence 999999999999999988887776654 34468999999999997642 22223332 2445678999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 172 DGLHEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
.|++++|++|.+.+.+++.....+.++.
T Consensus 160 ~gv~~l~~~l~~~~~~~~~~~~~~~~~~ 187 (218)
T 4djt_A 160 HNFGLPFLHLARIFTGRPDLIFVSNVNL 187 (218)
T ss_dssp BTTTHHHHHHHHHHHCCTTCCBCSCCCC
T ss_pred CCHHHHHHHHHHHHhcccccccccccCc
Confidence 9999999999999988877766655553
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=190.14 Aligned_cols=162 Identities=21% Similarity=0.304 Sum_probs=132.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
+..++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 46899999999999999999999988775 45677776666555544 45578999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.. ...+..... ...+++++++||+++.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~ 153 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA------KRLKLRFYRTSVKEDLN 153 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH------HHHTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH------HHcCCeEEEEecCCCCC
Confidence 99999999999998888887776643 578999999999997532 233333322 23456899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILK 187 (202)
Q Consensus 174 v~~l~~~l~~~~~~ 187 (202)
+++++++|.+.+.+
T Consensus 154 i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 154 VSEVFKYLAEKHLQ 167 (168)
T ss_dssp SHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-32 Score=188.21 Aligned_cols=167 Identities=20% Similarity=0.306 Sum_probs=132.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+++|++|+|||||++++.+..+. ...++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSD 81 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCS
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHHHhcCC
Confidence 3557899999999999999999999988775 55677777766655544 456689999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCC---CCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNND---NFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
++++|||++++.++..+..|+..+..... ..+.|+++|+||+|+... ....+...... ...+.+++++||+
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 156 (177)
T 1wms_A 82 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR-----DNGDYPYFETSAK 156 (177)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH-----HTTCCCEEECCTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH-----hcCCceEEEEeCC
Confidence 99999999999999988888777654321 257899999999999743 33344444321 1346789999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILK 187 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~ 187 (202)
+|.|++++|+++.+.+.+
T Consensus 157 ~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 157 DATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998864
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=205.66 Aligned_cols=166 Identities=48% Similarity=0.863 Sum_probs=136.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
++.++|+|+|++|||||||+++|.+..+....||.+.....+. ...+.+.+|||||++.+..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEE-----ETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEe-----cCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3567999999999999999999999888766777776665543 45688999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|||++++.++..+..++..+.......+.|+++|+||+|+.+.....++...+..... ...+++++++||++|.|+++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTC-CSSCEEEEECBTTTTBTHHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhh-hcCCCEEEEEECCCCcCHHH
Confidence 99999999999999999988877655568999999999999887777777666654332 45678999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 177 GINELYQLILKK 188 (202)
Q Consensus 177 l~~~l~~~~~~~ 188 (202)
+|++|.+.+.++
T Consensus 317 l~~~l~~~l~~~ 328 (329)
T 3o47_A 317 GLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999987643
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=194.83 Aligned_cols=164 Identities=24% Similarity=0.331 Sum_probs=122.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
..++.++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE-TTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE-CCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 4567899999999999999999999998875 55677776666555544 556788999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC------C--cCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN------A--IQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.. . ......... +...++++++
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~ 175 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL------AMTYGALFCE 175 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH------HHHHTCEEEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHH------HHHcCCeEEE
Confidence 999999999999999988877766544 345799999999999852 1 122222222 2234678999
Q ss_pred eeeecCCCHHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+||++|.|++++|++|.+.+.
T Consensus 176 ~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998775
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-32 Score=192.49 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=122.1
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
||.-......+......+.++|+++|++|||||||+++|.+..+. .+.+|.+..+. ..+.. ++..+.+.+||+||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 2 MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSV-DGRPVRLQLCDTAGQD 79 (201)
T ss_dssp ------------------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE-EEEEE-TTEEEEEEEEECCCST
T ss_pred CCCCCCCcccccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE-EEEEE-CCEEEEEEEEECCCCH
Confidence 343333333344556778999999999999999999999988765 44566654432 22222 4556789999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCc--------------CHH
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAI--------------QIK 144 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--------------~~~ 144 (202)
.+...+..+++++|++|+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.... ...
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 157 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEE 157 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHH
Confidence 99999999999999999999999999999987 566555543 2389999999999996531 122
Q ss_pred HHHHHhCchhhcCcceE-EEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 145 QIEKLLGLYELNNMHLY-YIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 145 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+..... ...+. ++++|||++|.|++++|++|.+.+.+.+.
T Consensus 158 ~~~~~~------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 158 AAKLLA------EEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp HHHHHH------HHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH------HhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 222221 22233 89999999999999999999999876654
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-32 Score=198.02 Aligned_cols=168 Identities=24% Similarity=0.351 Sum_probs=128.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
..+..++|+|+|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 4567899999999999999999999998876 45677776666555544 455689999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ...+..... ...+++++++||+++
T Consensus 88 ~vilV~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNHWLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTFA------QENQLLFTETSALNS 160 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHHHHHH------HHTTCEEEECCCC-C
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH------HHcCCEEEEEeCCCC
Confidence 999999999999999988888777654 34578999999999997532 233333322 234578999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy1315 172 DGLHEGINELYQLILKKRK 190 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~ 190 (202)
.|++++|++|.+.+.++..
T Consensus 161 ~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 161 ENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp CCHHHHHHHHHHHHTTCC-
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 9999999999998875543
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=191.82 Aligned_cols=170 Identities=19% Similarity=0.250 Sum_probs=134.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....++|+|+|++|+|||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..+++++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCCGGGTTCS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHhHHHHHhCCc
Confidence 3567899999999999999999999998875 55677776666666554 456789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCC---CCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNND---NFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
++|+|||++++.++..+..|+..+..... ..+.|+++|+||+|+.... .......... ...+.+++++||+
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 157 (207)
T 1vg8_A 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY-----SKNNIPYFETSAK 157 (207)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH-----HTTSCCEEECBTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH-----hcCCceEEEEeCC
Confidence 99999999999999988888776655421 2478999999999997432 3333333221 1346789999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q psy1315 170 TGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+|.|++++|++|.+.+.+++.
T Consensus 158 ~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 158 EAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp TTBSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999877654
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.7e-32 Score=194.96 Aligned_cols=168 Identities=19% Similarity=0.199 Sum_probs=128.0
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
......+||+++|++|||||||+++|.+..+. .+.+|.+.++. ..... ++..+.+.+||++|++.+..++..+++++
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC---CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEE-CCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 34567899999999999999999999998876 44677776553 23333 56678999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHH-HHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--------------cCHHHHHHHhCchhhcC
Q psy1315 93 DGIIFVIDSTDVERMEE-VKIELIKTIKNNDNFNVPILILANKQDLPNA--------------IQIKQIEKLLGLYELNN 157 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~ 157 (202)
|++|+|||++++.++.. +..|+..+... ..+.|+++|+||+|+.++ ....+.... +.
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~------~~ 171 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI------AK 171 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH------HH
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH------HH
Confidence 99999999999999998 56666666554 358999999999999753 223333332 23
Q ss_pred cceE-EEEEeeeecCCC-HHHHHHHHHHHHHHHHhh
Q psy1315 158 MHLY-YIQATCAITGDG-LHEGINELYQLILKKRKL 191 (202)
Q Consensus 158 ~~~~-~~~~~Sa~~~~~-v~~l~~~l~~~~~~~~~~ 191 (202)
..++ ++++|||++|.| ++++|+++.+.+.+.+..
T Consensus 172 ~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 172 QLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred HcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 3456 899999999998 999999999998766543
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-32 Score=190.56 Aligned_cols=164 Identities=22% Similarity=0.305 Sum_probs=130.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.++|+++|++|+|||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..+++++|+
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 346799999999999999999999988775 44677776665555544 4556789999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+... ..+..... ...+++++++||+++.
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~ 162 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVSTEEGERKA------KELNVMFIETSAKAGY 162 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECGGGGGGCCSCHHHHHHHH------HHHTCEEEEEBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccCcCCHHHHHHHH------HHcCCeEEEEeCCCCC
Confidence 99999999999999988888777654 235799999999999975432 33333322 2345789999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILK 187 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~ 187 (202)
|++++|++|.+.+.+
T Consensus 163 ~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 163 NVKQLFRRVAAALPG 177 (179)
T ss_dssp SHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999886643
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-32 Score=191.68 Aligned_cols=164 Identities=13% Similarity=0.186 Sum_probs=124.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.+||+++|++|||||||+++|.+..+. .+.+|.+..+. ..... ++..+.+.+||+||++.+... ..+++.+|
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETV-DHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEE-TTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEE-CCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 4567899999999999999999999998875 55677775542 22222 456789999999999887765 67899999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCC--CCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeee-
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNND--NFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCA- 168 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa- 168 (202)
++|+|||+++++++..+..|+..+..... ..+.|+++|+||+|+.+.. ...+..... ...++++++|||
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~e~Sa~ 167 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA------GRFGCLFFEVSAC 167 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH------HHHTCEEEECCSS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH------HHcCCcEEEEeec
Confidence 99999999999999999988877765421 2489999999999996542 333333332 234568999999
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILK 187 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~ 187 (202)
+++.|++++|++|.+.+.+
T Consensus 168 ~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 168 LDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp SCSHHHHHHHHHHHHHHHC
T ss_pred CccccHHHHHHHHHHHHhh
Confidence 8999999999999988753
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.1e-32 Score=190.96 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=129.4
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
....+.++|+++|++|+|||||+++|.+..+. .+.++.+.++... ... ++..+.+.+||+||++.+...+..+++++
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~-~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 95 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHV-MKY-KNEEFILHLWDTAGQEEYDRLRPLSYADS 95 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEE-EEE-CCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence 34667899999999999999999999998875 4567766555432 222 45678899999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCC----cCHHHHHHHhCchhhcCcceEE-EEEe
Q psy1315 93 DGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNA----IQIKQIEKLLGLYELNNMHLYY-IQAT 166 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~ 166 (202)
|++|+|||++++.++..+.. |+..+... ..+.|+++|+||+|+... ....+..... ...+++ ++++
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 167 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC------QKLGCVAYIEA 167 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH------HHHTCSCEEEC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHH------HhcCCCEEEEe
Confidence 99999999999999999744 44444432 457999999999999753 2333333332 223445 9999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 167 CAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
||++|.|++++|++|.+.+.+++.
T Consensus 168 Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 168 SSVAKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp BTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred ecCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999998876543
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-31 Score=190.36 Aligned_cols=165 Identities=24% Similarity=0.292 Sum_probs=130.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.++|+++|++|||||||+++|.+..+. .+.++.+..+. ..+.. ++..+.+.+||+||++. ...+..+++.+|+
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATI-DDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE-EEEEE-CCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 356899999999999999999999998875 44566664442 22222 45678899999999888 7888999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++++++.+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA------TELACAFYECSACTGE 175 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH------HHHTSEEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH------HHhCCeEEEECCCcCC
Confidence 99999999999999988888777665445589999999999997642 233333322 2335789999999999
Q ss_pred -CHHHHHHHHHHHHHHHH
Q psy1315 173 -GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 -~v~~l~~~l~~~~~~~~ 189 (202)
|++++|++|.+.+.+++
T Consensus 176 ~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 176 GNITEIFYELCREVRRRR 193 (196)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhhc
Confidence 99999999999887654
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=188.69 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=122.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC--CCCccccccceeeEeecccccccceEEEEEEcCCCCC-chhhHHhhhcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ--YLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-LRPLWKSYTRCTD 93 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~d 93 (202)
...+||+++|++|||||||+++|.+.. +....++.+.+.....+.+ ++..+.+.+||++|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999999643 3333444565554444444 56677889999999776 4556778888999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++++|||++++++|.....|+..+.......+.|+++|+||+|+..... ..+... ++...++++++|||++|
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~------~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA------XAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHH------HHHHTTCEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHH------HHHHhCCceEEeccccC
Confidence 9999999999999999988887666543345799999999999965322 222111 11223568999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|+++.+.+..++
T Consensus 157 ~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 157 HNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp BSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc
Confidence 999999999999886554
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=193.32 Aligned_cols=172 Identities=21% Similarity=0.229 Sum_probs=108.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+++|++|||||||+++|.+..+. .+.++.+..+ ...+.. ++..+.+.+||+||++.+...+..+++++|
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 107 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQV-KGKPVHLHIWDTAGQDDYDRLRPLFYPDAS 107 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEE-TTEEEEEEEEEC---------------CEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhccCC
Confidence 3457899999999999999999999988775 3455554333 222322 456778999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHh--------CchhhcCcceE-EE
Q psy1315 94 GIIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL--------GLYELNNMHLY-YI 163 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~--------~~~~~~~~~~~-~~ 163 (202)
++|+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.......+..... ....++...+. ++
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 185 (214)
T 2j1l_A 108 VLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185 (214)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence 999999999999999987 455555443 3479999999999997653221111000 00111222344 89
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
++|||++|.|++++|++|.+.+.+.+.
T Consensus 186 ~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 186 LECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999876654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-31 Score=186.81 Aligned_cols=163 Identities=28% Similarity=0.343 Sum_probs=130.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccc---------------------------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKG--------------------------- 67 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------------------- 67 (202)
..+.++|+|+|++|+|||||+++|++..+. .+.++.+..+....+.. ....
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET-TC-----------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe-cCccccccccccccccccccccccccccccc
Confidence 356899999999999999999999998875 45677776655554433 2222
Q ss_pred ----------eEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 68 ----------INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 68 ----------~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
+.+.+||+||++.+...+..+++.+|++|+|||++++.++..+..|+..+.... ..|+++|+||+|+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~ 159 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDK 159 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTC
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCc
Confidence 789999999999999999999999999999999999999999888888776643 4999999999994
Q ss_pred CC-CcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 138 PN-AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 138 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
.. .....+..... ...+++++++||+++.|++++|++|.+.+.++
T Consensus 160 ~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 160 NKFQVDILEVQKYA------QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp C-CCSCHHHHHHHH------HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHH------HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 32 23344444433 23456999999999999999999999988754
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=190.73 Aligned_cols=167 Identities=27% Similarity=0.364 Sum_probs=131.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....++|+|+|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 3567899999999999999999999988875 55677776665555544 455688999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ......... ...+++++++||+++.
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~ 167 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALA------KELGIPFIESSAKNDD 167 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-TTTCSEEEEEEECTTCSSCCSCHHHHHHHH------HHHTCCEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCcccccCHHHHHHHH------HHcCCEEEEEeCCCCC
Confidence 999999999999999888888777654 34478999999999995332 223333322 2234689999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
|++++|++|.+.+.++.
T Consensus 168 gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 168 NVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999887654
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-31 Score=185.28 Aligned_cols=168 Identities=22% Similarity=0.325 Sum_probs=120.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+++|++|||||||+++|.+..+. .+.++.+.... ..+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEE-TTEEEEEEEEECCC-----------CTTCS
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE-EEEEE-CCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 3457799999999999999999999988765 33444443332 22222 455678999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
++++|||++++.++..+..|+..+.......+.|+++|+||+|+... ....+..... ...+++++++||+++.
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~ 168 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA------KSYGIPFIETSAKTRQ 168 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH------HHHTCCEEECCTTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH------HHcCCeEEEEeCCCCC
Confidence 99999999999999998888877766544457999999999999763 2333444332 2234689999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
|+++++++|.+.+.+.+.
T Consensus 169 gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 169 GVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp THHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999876543
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-31 Score=181.23 Aligned_cols=161 Identities=21% Similarity=0.306 Sum_probs=127.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.++|+++|++|+|||||++++.+..+. ...++.+... ...... ++..+.+.+||+||++++...+..+++.+|++++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEE-CCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 589999999999999999999988775 3445544332 222222 4556789999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
|||++++.++..+..|+..+.......+.|+++|+||+|+.... ......... ...+++++++||+++.|+++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA------RSYGIPYIETSAKTRQGVED 154 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH------HHHTCCEEEECTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH------HHcCCeEEEecCCCCCCHHH
Confidence 99999999999988888777665444589999999999997632 333333322 23356899999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 177 GINELYQLILK 187 (202)
Q Consensus 177 l~~~l~~~~~~ 187 (202)
++++|.+.+.+
T Consensus 155 l~~~l~~~~~~ 165 (166)
T 2ce2_X 155 AFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988753
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=191.53 Aligned_cols=166 Identities=20% Similarity=0.214 Sum_probs=126.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+.++|+++|++|+|||||+++|.+..+. .+.++.+..+. ..+.. ++..+.+.+||+||++.+..++..+++++|++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEEC-SSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEE-CCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 46799999999999999999999988875 45667664442 22223 55678999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCc----------CHHHHHHHhCchhhcCcce-EEE
Q psy1315 96 IFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAI----------QIKQIEKLLGLYELNNMHL-YYI 163 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~-~~~ 163 (202)
|+|||++++.++..+. .|+..+... .++.|+++|+||+|+.+.. ...+..... ...+ .++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~ 156 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR------KQIGAAAY 156 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH------HHHTCSEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH------HHcCCceE
Confidence 9999999999999987 566555543 2489999999999986542 222222221 2223 489
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHhhh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 192 (202)
+++||++|.|++++|++|.+.+.+.+.+.
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHCC----
T ss_pred EEccCCCCCCHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999999987665433
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=190.80 Aligned_cols=167 Identities=14% Similarity=0.203 Sum_probs=99.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC--CCC-CccccccceeeEeeccccccc--ceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD--QYL-NTVPTIGFNCEKVKGQIGKCK--GINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~--~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
...++|+|+|++|||||||+++|.+. .+. .+.+|.+.......+.. ++. .+.+.+||+||++.+...+..++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 96 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSDLYKEQISQYWNG 96 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEEC-TTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEE-CCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence 46789999999999999999999988 664 55677764444444433 344 7899999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCC--CCCCcEEEEeeCCCCCC-C--cCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNND--NFNVPILILANKQDLPN-A--IQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
+|++|+|||++++.++..+..|+..+..... ..+.|+++|+||+|+.. . ....+..... ...+++++++
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~------~~~~~~~~~~ 170 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA------TTNTLDFFDV 170 (208)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH------HHTTCEEEEC
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH------HHcCCEEEEe
Confidence 9999999999999999999988887776532 25899999999999976 3 2233444432 2335789999
Q ss_pred eeec-CCCHHHHHHHHHHHHHHHHh
Q psy1315 167 CAIT-GDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 167 Sa~~-~~~v~~l~~~l~~~~~~~~~ 190 (202)
||++ +.|++++|++|.+.+.++..
T Consensus 171 Sa~~~~~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 171 SANPPGKDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp CC-------CHHHHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999998876654
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-32 Score=196.35 Aligned_cols=168 Identities=20% Similarity=0.222 Sum_probs=139.0
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
.......+||+++|++|||||||+++|+.+.+. .+.++.+.+........ +...+.+.+|||||++.+...+..++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 345668899999999999999999997766654 55788888888877766 5677899999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+|++|+|||++++.++..+..|+..+... ..+.|+++|+||+|+.+....... ..+....++++++|||++|
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~------~~~~~~~~~~~~~~Sa~~~ 159 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKS------IVFHRKKNLQYYDISAKSN 159 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCSSCGGG------CCHHHHHTCEEEECBGGGT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCccccccccHHH------HHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999998888887765 248999999999999765432211 1222345678999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|++|.+.+....
T Consensus 160 ~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 160 YNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp BTTTHHHHHHHHHHHTCT
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887654
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=185.02 Aligned_cols=162 Identities=19% Similarity=0.225 Sum_probs=125.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.++|+++|++|+|||||++++.+..+. .+.++.+.++.... .. +...+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~-~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 79 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI-SC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAFI 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEE-EE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEE-EE-CCEEEEEEEEECCCchhhHHHHHHhcccCCEEE
Confidence 5789999999999999999999988775 44566665443322 22 455678999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccC-CCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNN-DNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
+|||++++.++.....|+..+.... ...+.|+++|+||+|+..... ....... ....+++++++||++|.|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~~~g 153 (172)
T 2erx_A 80 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL------ARTWKCAFMETSAKLNHN 153 (172)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHH------HHHHTCEEEECBTTTTBS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHH------HHHhCCeEEEecCCCCcC
Confidence 9999999999988888876665432 224789999999999965433 2222222 123457899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILK 187 (202)
Q Consensus 174 v~~l~~~l~~~~~~ 187 (202)
++++|++|.+.+.+
T Consensus 154 i~~l~~~l~~~~~~ 167 (172)
T 2erx_A 154 VKELFQELLNLEKR 167 (172)
T ss_dssp HHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999886643
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=185.45 Aligned_cols=161 Identities=24% Similarity=0.240 Sum_probs=125.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.+..++|+++|++|||||||+++|.+..+. .+.+|.+..+. ..+.. ++..+.+.+||+||++++...+..+++++|+
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE-EEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE-EEEEE-CCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 347899999999999999999999988775 44666654442 22222 4566899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCc--------------CHHHHHHHhCchhhcCcc
Q psy1315 95 IIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAI--------------QIKQIEKLLGLYELNNMH 159 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~ 159 (202)
+|+|||+++++++..+. .|+..+... ..+.|+++|+||+|+.... ...+.... +...
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~ 164 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL------AKEI 164 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH------HHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH------HHHc
Confidence 99999999999999887 566555543 3489999999999997642 12222221 1222
Q ss_pred eE-EEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 160 LY-YIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 160 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+. ++++|||++|.|++++|++|.+.+.
T Consensus 165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 165 GACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 33 7999999999999999999998765
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=184.94 Aligned_cols=167 Identities=25% Similarity=0.292 Sum_probs=119.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh-hHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP-LWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~d~ 94 (202)
..+.++|+++|++|||||||+++|.+..+....++.......+.+. ....+.+.+|||||++.+.. ++..+++.+|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN--NNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS--STTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEec--CCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 4568999999999999999999999988876656555555554441 22268899999999999887 88899999999
Q ss_pred EEEEEeCCCch-hHHHHHHHHHHHHcc--CCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCch------------------
Q psy1315 95 IIFVIDSTDVE-RMEEVKIELIKTIKN--NDNFNVPILILANKQDLPNAIQIKQIEKLLGLY------------------ 153 (202)
Q Consensus 95 ~ilv~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~------------------ 153 (202)
+|+|||+++.. ++.....++...... ....+.|+++|+||+|+............+...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999998853 466666666655432 123478999999999998765544332221100
Q ss_pred ------------hhcC-c--ceEEEEEeeeecC------CCHHHHHHHHHHH
Q psy1315 154 ------------ELNN-M--HLYYIQATCAITG------DGLHEGINELYQL 184 (202)
Q Consensus 154 ------------~~~~-~--~~~~~~~~Sa~~~------~~v~~l~~~l~~~ 184 (202)
.++. . .++++++|||++| .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0001 1 1789999999999 9999999999875
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=183.77 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=124.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
....++|+++|++|||||||+++|.+..+. .+.++.+..+. ..+.. +...+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEE-CCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 456899999999999999999999998875 44666664442 23333 5567899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCC--------------cCHHHHHHHhCchhhcCcc
Q psy1315 95 IIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNA--------------IQIKQIEKLLGLYELNNMH 159 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~ 159 (202)
+|+|||++++.++..+ ..|+..+... .++.|+++|+||+|+... ....+..... ...
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~ 153 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA------KQI 153 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH------HHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH------HHc
Confidence 9999999999999988 4565555443 347999999999999742 1222222221 222
Q ss_pred -eEEEEEeeee-cCCCHHHHHHHHHHHHHH
Q psy1315 160 -LYYIQATCAI-TGDGLHEGINELYQLILK 187 (202)
Q Consensus 160 -~~~~~~~Sa~-~~~~v~~l~~~l~~~~~~ 187 (202)
..++++|||+ ++.|++++|+.+.+.+.+
T Consensus 154 ~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 154 GAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 3689999998 689999999999988753
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=187.24 Aligned_cols=164 Identities=18% Similarity=0.199 Sum_probs=125.1
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
...+..+||+++|++|||||||+++|.+..+. .+.++.+..+. ..+.. +...+.+.+||+||++.+...+..+++++
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 100 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDS 100 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEES-SSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEE-CCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence 34567899999999999999999999998876 34666665442 23333 55678999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCC--------------cCHHHHHHHhCchhhcC
Q psy1315 93 DGIIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNA--------------IQIKQIEKLLGLYELNN 157 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~ 157 (202)
|++|+|||++++.++..+ ..|+..+... ..+.|+++|+||+|+... ....+..... .
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~------~ 172 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA------K 172 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH------H
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH------H
Confidence 999999999999999988 4565555443 347999999999999642 1222222221 2
Q ss_pred cc-eEEEEEeeee-cCCCHHHHHHHHHHHHHH
Q psy1315 158 MH-LYYIQATCAI-TGDGLHEGINELYQLILK 187 (202)
Q Consensus 158 ~~-~~~~~~~Sa~-~~~~v~~l~~~l~~~~~~ 187 (202)
.. ..++++|||+ ++.|++++|+.|.+.+.+
T Consensus 173 ~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 173 QIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 22 3689999998 689999999999988764
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=184.02 Aligned_cols=167 Identities=22% Similarity=0.217 Sum_probs=123.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
....++|+++|++|||||||++++.+..+. .+.++.+..+... +.. ++..+.+.+||+||++.+...+..+++++|+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE-EEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE-EEE-CCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 356899999999999999999999998875 4456666544322 222 4566889999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhC--------chhhcCcceE-EEE
Q psy1315 95 IIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG--------LYELNNMHLY-YIQ 164 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~ 164 (202)
+|+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.......+...... ...++...+. +++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYL 177 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEE
Confidence 99999999999999884 444444332 34799999999999976422111100000 0011122233 899
Q ss_pred EeeeecCCCHHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
++||++|.|++++|++|.+.+.
T Consensus 178 ~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 178 ECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998765
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=183.70 Aligned_cols=168 Identities=20% Similarity=0.211 Sum_probs=124.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+.++|+++|++|+|||||+++|.+..+. .+.++.+.... ..... ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-EEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE-EEEEE-CCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 35799999999999999999999988775 44566554332 22222 45678899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHh-----C---chhhcCcceE-EEEE
Q psy1315 96 IFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL-----G---LYELNNMHLY-YIQA 165 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~-----~---~~~~~~~~~~-~~~~ 165 (202)
|+|||++++.++.... .|+..+... ..+.|+++|+||+|+.......+..... . ...++...+. ++++
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 158 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 9999999999999887 455555443 2389999999999996542111100000 0 0011122343 8999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+||++|.|++++|+++.+.+.+.
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 159 CSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHSCC
T ss_pred ecCCCccCHHHHHHHHHHHHhcc
Confidence 99999999999999999988643
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-33 Score=199.34 Aligned_cols=169 Identities=27% Similarity=0.332 Sum_probs=124.1
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
.+.....++|+|+|++|||||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..++++
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 105 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRG 105 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSCC--CC
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhhc
Confidence 344567899999999999999999999988775 34566666665555544 4566889999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+........ .....++...+++++++||+++
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~----~~~~~~~~~~~~~~~~vSA~~g 180 (199)
T 3l0i_B 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDY----TTAKEFADSLGIPFLETSAKNA 180 (199)
T ss_dssp CSEEEECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCS----CC-CHHHHTTTCCBCCCCC---
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCH----HHHHHHHHHcCCeEEEEECCCC
Confidence 99999999999999999998888777554 445899999999999965432110 0011222344578999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILK 187 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~ 187 (202)
.|++++|++|.+.+.+
T Consensus 181 ~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999877653
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-31 Score=186.28 Aligned_cols=167 Identities=17% Similarity=0.211 Sum_probs=129.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....++|+++|++|||||||+++|.+..+. .+.++.+.++... ... +...+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 81 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQV-ISC-DKSVCTLQITDTTGSHQFPAMQRLSISKGH 81 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEE-EEE-TTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEE-EEE-CCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence 3456899999999999999999999988775 4456666444332 222 456678999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+..... ..+.|+++|+||+|+.... ......... ...+++++++||++|
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~ 155 (199)
T 2gf0_A 82 AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA------QEWKCAFMETSAKMN 155 (199)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH------HHHTCEEEECBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH------HHhCCeEEEEecCCC
Confidence 99999999999999988877765544311 2478999999999997532 233333322 234568999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|++|.+.+.+++
T Consensus 156 ~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 156 YNVKELFQELLTLETRRN 173 (199)
T ss_dssp BSHHHHHHHHHHHCSSSC
T ss_pred CCHHHHHHHHHHHHhhhh
Confidence 999999999999886553
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=185.80 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=121.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.++|+++|++|||||||++++.+..+. .+.++.+..+ ...... ++..+.+.+||+||++.+...+..+++++|+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEEC-C-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 357899999999999999999999988775 4455554322 223323 5667888999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhC--------chhhcC-cceEEEE
Q psy1315 95 IIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG--------LYELNN-MHLYYIQ 164 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~ 164 (202)
+|+|||++++.++.... .|+..+... ..+.|+++|+||+|+.......+...... ...++. ....+++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 99999999999999987 455555443 25899999999999976532211111000 001111 2235799
Q ss_pred EeeeecCCCHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
++||++|.|++++|++|.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ECCTTTCTTHHHHHHHHHHTT
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998753
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=183.37 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=118.3
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhH---Hhhhc
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLW---KSYTR 90 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~---~~~~~ 90 (202)
...++.+||+++|++|||||||++++.+............+..........+..+.+.+||+||++.+.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 456789999999999999999999888754433333333333333332223567899999999999987776 89999
Q ss_pred CCCEEEEEEeCCCc--hhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH----HHHHHHhCchhhcC----cce
Q psy1315 91 CTDGIIFVIDSTDV--ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI----KQIEKLLGLYELNN----MHL 160 (202)
Q Consensus 91 ~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~----~~~ 160 (202)
++|++|+|||++++ +++..+..|+...... ..+.|+++|+||+|+...... ..+..... ..++. ..+
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~ 171 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRAN-DDLADAGLEKLH 171 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHH-HHHHHTTCTTSC
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHH-HHHHHhhhhcCC
Confidence 99999999999987 6667767677665432 348999999999998763211 11111110 11222 567
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+++++|||++ .|++++|+.+++.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999998764
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=184.35 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=113.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+.++|+++|++|+|||||++++.+..+. .+.++.+..+.. .... ++..+.+.+||+||++++...+..+++++|++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVV-NGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC--------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEE-CCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 46799999999999999999999988765 445655533321 2222 45567888999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcC------------HHHHHHHhCchhhcCcce-E
Q psy1315 96 IFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQ------------IKQIEKLLGLYELNNMHL-Y 161 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~ 161 (202)
++|||++++.++..+. .|+..+... ..+.|+++|+||+|+.+... ..+.... +...+ .
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~ 155 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL------KKLIGAP 155 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH------HHHHTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH------HHHcCCC
Confidence 9999999999999987 455555443 23899999999999865432 1222221 12234 3
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
++++|||++|.|++++|++|.+.+.
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999988764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-30 Score=182.88 Aligned_cols=168 Identities=22% Similarity=0.236 Sum_probs=121.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...++|+++|++|||||||+++|.+..+. .+.++.+..+... ... ++..+.+.+||+||++.+...+..+++++|++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEE-TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEE-CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 46789999999999999999999998876 3456665544322 222 45568899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc--------hhhcCcceE-EEEE
Q psy1315 96 IFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL--------YELNNMHLY-YIQA 165 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~ 165 (202)
|+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.......+....... ..++...+. ++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE 178 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence 9999999999999884 454444432 347999999999999754221111110000 011112233 8999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+||++|.|++++|++|.+.+.+.
T Consensus 179 ~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 179 CSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHSC
T ss_pred eeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=176.72 Aligned_cols=166 Identities=18% Similarity=0.154 Sum_probs=118.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.++.++|+++|++|||||||+++|.+..+.. ..++.+.+.....+ ......+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQV---TVNDKKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEE---EETTEEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEE---EeCCceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 4578999999999999999999999887753 33444433333333 2234578899999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc-hhhcCcc--eEEEEEeeeecC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL-YELNNMH--LYYIQATCAITG 171 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~Sa~~~ 171 (202)
+|+|+|++++...... ..+..... .+.|+++|+||+|+.... .......+.. ..+.... .++++++||++|
T Consensus 82 ~i~v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 82 VILVVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 9999999874322222 22223322 278999999999997642 2333332221 1222222 379999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy1315 172 DGLHEGINELYQLILKKRK 190 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~ 190 (202)
.|++++|++|.+.+...+.
T Consensus 156 ~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhhhhhcc
Confidence 9999999999998876554
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-30 Score=179.63 Aligned_cols=168 Identities=18% Similarity=0.224 Sum_probs=118.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC--CCC-CccccccceeeEeecccc--cccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD--QYL-NTVPTIGFNCEKVKGQIG--KCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~--~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.+||+++|++|||||||+++|.+. .+. .+.+|.+..+....+... +...+.+.+||++|++++...++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 343 456777877666555321 235678999999999988889999999999
Q ss_pred EEEEEEeCCCc-hhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE----EEEEeee
Q psy1315 94 GIIFVIDSTDV-ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY----YIQATCA 168 (202)
Q Consensus 94 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa 168 (202)
++++|||++++ .++..+..|+..+... ..+.|+++|+||+|+.+............ ..++...++ +++++||
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa 158 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKIT-KELLNKRGFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHH-HHTTTCTTSCEEEEEEECCT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHH-HHHHHhcCCcchhheEEEec
Confidence 99999999987 5788888888777654 24789999999999976533221100000 112222233 4999999
Q ss_pred ecCC-CHHHHHHHHHHHHHHHH
Q psy1315 169 ITGD-GLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~-~v~~l~~~l~~~~~~~~ 189 (202)
+++. |++++++.|.+.+.+.+
T Consensus 159 ~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 159 TEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp TSCCHHHHHHHHHHHHHHHCC-
T ss_pred ccCchhHHHHHHHHHHHHhccc
Confidence 9996 99999999998876544
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=176.45 Aligned_cols=175 Identities=15% Similarity=0.093 Sum_probs=114.4
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC------CCc--
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ------EKL-- 81 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------~~~-- 81 (202)
+.++....+.++|+|+|++|||||||+++|++..+. ..+..+.+........ ......+.+|||||. +..
T Consensus 20 ~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~ 97 (228)
T 2qu8_A 20 QGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHF-DHKLNKYQIIDTPGLLDRAFENRNTI 97 (228)
T ss_dssp --CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEE-EETTEEEEEEECTTTTTSCGGGCCHH
T ss_pred ccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeee-ecCCCeEEEEECCCCcCcccchhhhH
Confidence 344555567899999999999999999999988764 2222222222221111 234578999999998 331
Q ss_pred -hhhHHhhhcCCCEEEEEEeCCCchhHHH--HHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHH-HHHhCchhhcC
Q psy1315 82 -RPLWKSYTRCTDGIIFVIDSTDVERMEE--VKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQI-EKLLGLYELNN 157 (202)
Q Consensus 82 -~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~ 157 (202)
...+..++..+|++|+|||++++.++.. ...|+..+... ..+.|+++|+||+|+.+....... .... ..+..
T Consensus 98 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~ 173 (228)
T 2qu8_A 98 EMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLI--KQILD 173 (228)
T ss_dssp HHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHH--HHHHH
T ss_pred HHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHH--HHHHH
Confidence 1223445788999999999998877642 23444444432 347999999999999764332211 1111 11212
Q ss_pred cce--EEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 158 MHL--YYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 158 ~~~--~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
..+ +++++|||++|.|++++|++|.+.+.+++.
T Consensus 174 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 174 NVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp HCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred hcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 233 789999999999999999999999876654
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-31 Score=188.28 Aligned_cols=165 Identities=19% Similarity=0.218 Sum_probs=121.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
++.++|+++|++|||||||+++|.+..+. .+.++.+... ...... ++..+.+.+||+||++++...+..+++++|++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 57899999999999999999999988775 3345544332 222222 45667888999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHH--------HHHhCchhhcCcceE-EEEE
Q psy1315 96 IFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQI--------EKLLGLYELNNMHLY-YIQA 165 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~ 165 (202)
|+|||++++.++.... .|+..+... ..+.|+++|+||+|+.......+. ........++...+. ++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
Confidence 9999999999999887 454444332 237899999999999754211100 000111122334455 8999
Q ss_pred eeeecCCCHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+||++|.|++++|++|.+.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999999998764
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=172.70 Aligned_cols=165 Identities=22% Similarity=0.327 Sum_probs=128.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...++|+++|++|||||||++++.+..+. .+.++.+.......+.+ ++..+.+.+||++|++.+...+..+++.++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 45799999999999999999999998775 45677776655544444 55678899999999998888889999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++|||+++..++..+..|+..+... ...+.|+++|+||+|+.+.. ......... ...++.++++||+++.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~------~~~~~~~~d~Sal~~~~ 154 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA------EKNNLSFIETSALDSTN 154 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH------HHcCCeEEEEeCCCCCC
Confidence 9999999998988887777655443 23478999999999996532 233333322 33457899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKKR 189 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~ 189 (202)
++++|++|.+.+.+..
T Consensus 155 i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 155 VEEAFKNILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887653
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-29 Score=184.59 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=118.8
Q ss_pred hcCCCcccEEEEEcCC---------CCCHHHHHHHhhcC---CCC-Cccccc-cceeeEeeccc-------------ccc
Q psy1315 13 QASGSSSVHIVMLGLD---------SAGKTTALYRLKFD---QYL-NTVPTI-GFNCEKVKGQI-------------GKC 65 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~---------~~GKssL~~~l~~~---~~~-~~~~~~-~~~~~~~~~~~-------------~~~ 65 (202)
.+.....+||+++|.+ |||||||+++|.+. .+. .+.++. +..+....+.. .++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 4456788999999999 99999999999984 442 334443 33322222211 135
Q ss_pred cceEEEEEE-----------------------cCCCCCchhhHHhhhc---------------------CCCEEEEEEeC
Q psy1315 66 KGINFLIWD-----------------------VGGQEKLRPLWKSYTR---------------------CTDGIIFVIDS 101 (202)
Q Consensus 66 ~~~~~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~ilv~d~ 101 (202)
..+.+.+|| ++|++++..++..+++ ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 678899999 6677777777777776 79999999999
Q ss_pred CCc--hhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 102 TDV--ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 102 ~~~--~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
+++ .+++.+..|+..+.......+.|+++|+||+|+.......+...... ...+++++++||++|.|++++|+
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL-----SKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH-----TSSSCCEEECBTTTTBSHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH-----hcCCCeEEEEECCCCCCHHHHHH
Confidence 998 89999998887776542234799999999999975433333322211 12367899999999999999999
Q ss_pred HHHHHHH
Q psy1315 180 ELYQLIL 186 (202)
Q Consensus 180 ~l~~~~~ 186 (202)
+|.+.+.
T Consensus 248 ~l~~~l~ 254 (255)
T 3c5h_A 248 TLVQLID 254 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988764
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-28 Score=185.14 Aligned_cols=168 Identities=20% Similarity=0.234 Sum_probs=126.8
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhh
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSY 88 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 88 (202)
+.+.......++|+++|++|+|||||++++.+..+. .+.++.+.... ..+.. ++..+.+.+||+||++.+...+..+
T Consensus 146 ~~~~~~~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~ 223 (332)
T 2wkq_A 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPVNLGLWDTAGLEDYDRLRPLS 223 (332)
T ss_dssp HHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE-EEEEE-TTEEEEEEEEEECCCGGGTTTGGGG
T ss_pred ccchhcccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE-EEEEE-CCEEEEEEEEeCCCchhhhHHHHHh
Confidence 334445667899999999999999999999988775 44555554332 22222 4567788899999999999999999
Q ss_pred hcCCCEEEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--------------HHHHHHHhCch
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQ--------------IKQIEKLLGLY 153 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~~~~~~~~~~~ 153 (202)
++++|++|+|||++++.++..+. .|+..+... ..+.|+++|+||+|+..... ..+....
T Consensus 224 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~---- 297 (332)
T 2wkq_A 224 YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM---- 297 (332)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH----
T ss_pred ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHH----
Confidence 99999999999999999999887 455444443 23899999999999865321 1112221
Q ss_pred hhcCcceE-EEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 154 ELNNMHLY-YIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 154 ~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
+...+. ++++|||++|.|++++|++|.+.+.+
T Consensus 298 --~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 298 --AKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp --HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred --HHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 122343 89999999999999999999988753
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=169.74 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=107.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCcccccccee--eEeecccccccceEEEEEEcCCCCCchhh--------HHh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNC--EKVKGQIGKCKGINFLIWDVGGQEKLRPL--------WKS 87 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~ 87 (202)
+.++|+++|++|||||||+++|.+..+....+..+.+. ....+ ..+...+.+|||||..++... ...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHI---HIDGMPLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEE---EETTEEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEE---EECCeEEEEEECCCcccchhHHHHHHHHHHHH
Confidence 46899999999999999999999876543333333222 22222 223456899999998653211 224
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++.+|++++|+|++++.++.. ..|+..+... ...+.|+++|+||+|+.+... .+....+.+++++|
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~S 146 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL-----------GMSEVNGHALIRLS 146 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC-----------EEEEETTEEEEECC
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh-----------hhhhccCCceEEEe
Confidence 5789999999999998887763 3455555443 334799999999999854211 11223467899999
Q ss_pred eecCCCHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILK 187 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~ 187 (202)
|++|.|++++|++|.+.+..
T Consensus 147 A~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 147 ARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTTCTTHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999887643
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-28 Score=180.43 Aligned_cols=162 Identities=16% Similarity=0.170 Sum_probs=115.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCC----ccccccceeeEeecccccccceEEEEEEcCCCCCchh---hHHhhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLN----TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP---LWKSYTRCTD 93 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~d 93 (202)
||+++|+.|||||||++++.++.++. ..+|.|.....+ ...+.+++|||+|++++.. .+..|+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v------~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF------STLIDLAVMELPGQLNYFEPSYDSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE------CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE------ccEEEEEEEECCCchhccchhhhhhhhccCCC
Confidence 68999999999999999888765443 457777666543 1347899999999999964 4689999999
Q ss_pred EEEEEEeCCCc--hhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH----HHHHHHhCchhhcCc----ceEEE
Q psy1315 94 GIIFVIDSTDV--ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI----KQIEKLLGLYELNNM----HLYYI 163 (202)
Q Consensus 94 ~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~----~~~~~ 163 (202)
++|+|||++++ +.+.....|+..+... .++.|+++|+||+|+..+... ..+..... ..++.. .+++|
T Consensus 75 ~~IlV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~-~~la~~~~~~~~i~f 151 (331)
T 3r7w_B 75 ALVYVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTG-EELLELGLDGVQVSF 151 (331)
T ss_dssp EEEEECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHH-HTTSSSSCSCCCEEE
T ss_pred EEEEEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHH-HHHHhhcccccCceE
Confidence 99999999987 2222222233333222 348999999999999865332 12221111 123332 57999
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHhhh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 192 (202)
++|||++ .||.++|..+++.+..+....
T Consensus 152 ~eTSAkd-~nV~eAFs~iv~~li~~~~~l 179 (331)
T 3r7w_B 152 YLTSIFD-HSIYEAFSRIVQKLIPELSFL 179 (331)
T ss_dssp ECCCSSS-SHHHHHHHHHHTTSSTTHHHH
T ss_pred EEeccCC-CcHHHHHHHHHHHHHhhHHHH
Confidence 9999987 699999999999877554433
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=169.94 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=110.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCC----------CCCchhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----------QEKLRPL 84 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~ 84 (202)
....++|+++|++|||||||+++|++..+ ..+.++.+.+.....+.. + ..+.+||||| ++.+...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-N---DELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-T---TTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-C---CcEEEEECCCCCccccCHHHHHHHHHH
Confidence 45689999999999999999999999875 455666666665544433 1 2589999999 5666777
Q ss_pred HHhhhcCC---CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE
Q psy1315 85 WKSYTRCT---DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 85 ~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
+..+++.+ |++++|+|++++.++.... .+..+.. .+.|+++|+||+|+............+. ..+....+.
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~ 169 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVR-QTLNIDPED 169 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHH-HHHTCCTTS
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHH-HHHcccCCC
Confidence 78888777 9999999999877766532 1222222 3789999999999987654433222221 112234567
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+++++||++|.|++++|++|.+.+.
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999988763
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-28 Score=166.04 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=103.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCch------hhHHhhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR------PLWKSYTR 90 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~ 90 (202)
+.++|+++|++|||||||+++|.+..+. ...|+.+.......+ ......+.+|||||++.+. .....+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEF---EYNGEKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEE---EETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEE---EECCcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 3589999999999999999999987653 223332222222222 2235689999999988764 34466664
Q ss_pred --CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH-HHHHHhCchhhcCcceEEEEEee
Q psy1315 91 --CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK-QIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 91 --~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
++|++++|+|+++.+. ...|+..+... +.|+++|+||+|+....... +.+. ++...+++++++|
T Consensus 79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~~~~S 145 (165)
T 2wji_A 79 NEKPDLVVNIVDATALER---NLYLTLQLMEM----GANLLLALNKMDLAKSLGIEIDVDK------LEKILGVKVVPLS 145 (165)
T ss_dssp HHCCSEEEEEEETTCHHH---HHHHHHHHHHT----TCCEEEEEECHHHHHHTTCCCCHHH------HHHHHTSCEEECB
T ss_pred cCCCCEEEEEecCCchhH---hHHHHHHHHhc----CCCEEEEEEchHhccccChhhHHHH------HHHHhCCCEEEEE
Confidence 7999999999987543 33455555442 78999999999985322110 1111 1122346899999
Q ss_pred eecCCCHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLI 185 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~ 185 (202)
|++|.|++++|+++.+.+
T Consensus 146 A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 146 AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGGTBSHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=166.62 Aligned_cols=163 Identities=21% Similarity=0.309 Sum_probs=129.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
..+..++|+++|++|||||||++++.+..++ .+.++.+..+....+.. ++..+.+.+||++|.+++...+..+++.++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 4566799999999999999999999998875 56777777666555544 556678889999999998889999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++++|+|+.+..+++.+..|+..+... .....|+++|+||+|+.+.. ........ ....++.++++||+++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l------~~~~~~~~ld~Sald~ 176 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF------AEKNGLSFIETSALDS 176 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH------HHHTTCEEEECCTTTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH------HHHcCCEEEEEeCCCC
Confidence 999999999988888877777655432 23478999999999996532 23333332 2334578899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLI 185 (202)
Q Consensus 172 ~~v~~l~~~l~~~~ 185 (202)
.|++++|+.|.+.+
T Consensus 177 ~~v~~l~~~l~~~i 190 (191)
T 1oix_A 177 TNVEAAFQTILTEI 190 (191)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=168.37 Aligned_cols=160 Identities=16% Similarity=0.162 Sum_probs=116.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC----------CCCchhhH
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----------QEKLRPLW 85 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~ 85 (202)
....++|+++|++|||||||+++|++..+....++.+.+........ ...+.+||||| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV----NSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE----TTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE----CCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 45678999999999999999999999887777777776665544322 23578999999 55566777
Q ss_pred HhhhcCC---CEEEEEEeCCCchhHHH--HHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 86 KSYTRCT---DGIIFVIDSTDVERMEE--VKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 86 ~~~~~~~---d~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
..+++.+ |++++|+|+++..+... ...|+.. . +.|+++|+||+|+.+............. .......
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~ 167 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L----NIPFTIVLTKMDKVKMSERAKKLEEHRK-VFSKYGE 167 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T----TCCEEEEEECGGGSCGGGHHHHHHHHHH-HHHSSCC
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c----CCCEEEEEEChhcCChHHHHHHHHHHHH-HHhhcCC
Confidence 7777766 99999999986543332 2223222 1 6899999999999866544433332221 1112245
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
++++++||++|.|++++|++|.+.+.+
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999999988753
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=163.75 Aligned_cols=151 Identities=17% Similarity=0.248 Sum_probs=101.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSYTRCT 92 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 92 (202)
.+|+++|++|+|||||++++.+..+....+..+.+........ ......+.+||+||... +...+..+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVV-ETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEE-EETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEE-EeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 5899999999999999999998875433333333222222211 23445899999999876 345677788999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE-EEEEeeeecC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY-YIQATCAITG 171 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 171 (202)
|++|+|+|++++.+... .++...... .+.|+++|+||+|+.+.. .... .+. ..+. +++++||++|
T Consensus 81 ~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~------~~~-~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LYLG------PLY-GLGFGDPIPTSSEHA 146 (161)
T ss_dssp SEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCG------GGG-GGSSCSCEECBTTTT
T ss_pred CEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--HhHH------HHH-hCCCCCeEEEecccC
Confidence 99999999987544322 233333222 278999999999987541 1111 121 2233 6899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLI 185 (202)
Q Consensus 172 ~~v~~l~~~l~~~~ 185 (202)
.|++++|+++.+.+
T Consensus 147 ~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 147 RGLEELLEAIWERL 160 (161)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHhC
Confidence 99999999998754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-28 Score=189.96 Aligned_cols=175 Identities=15% Similarity=0.160 Sum_probs=123.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC----------CCchhhHH-
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ----------EKLRPLWK- 86 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~~- 86 (202)
..++|+++|++|||||||+|+|++..+....+..+++.......+ ......+.+|||||+ +.+.....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSF-TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEE-EETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEE-EECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 569999999999999999999999876544444455544433322 334557999999996 44444433
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEE
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 164 (202)
.+++.+|++|+|+|++++.+++.. .|+..+... +.|+++|+||+|+.+.... .+....+. ..+......+++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~----~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 326 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA----GKAVVIVVNKWDAVDKDESTMKEFEENIR-DHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT----TCEEEEEEECGGGSCCCTTHHHHHHHHHH-HHCGGGTTSCEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc----CCcEEEEEECccCCCcchHHHHHHHHHHH-HhcccCCCCCEE
Confidence 478889999999999988887765 355544433 7999999999999765432 22322221 122233467899
Q ss_pred EeeeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 165 ATCAITGDGLHEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
++||++|.|++++|+.+.+.+.+...+.+++.+|+
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~ 361 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHSLRVQTNVLND 361 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 99999999999999999999998887777777664
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=179.89 Aligned_cols=160 Identities=16% Similarity=0.190 Sum_probs=119.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC----CccccccceeeEeecccccccceEEEEEEcCCCCCc-----hhhHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL----NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL-----RPLWKSY 88 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~ 88 (202)
..+||+++|++|||||||++++++.... ...+|.+.......+ .+.+.+.+||+||++.+ ...+..+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 77 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF----LGNMTLNLWDCGGQDVFMENYFTKQKDHI 77 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE----TTTEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe----CCceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence 4689999999999999999999987433 345666665555443 24789999999999887 6788899
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHH---HHHccCCCCCCcEEEEeeCCCCCCCcCHH----HHHHHhCchhhcCcc--
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELI---KTIKNNDNFNVPILILANKQDLPNAIQIK----QIEKLLGLYELNNMH-- 159 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~---~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~-- 159 (202)
++++|++|+|||++++++++.+..|.. .+... .++.|+++|+||+|+.+..... ...... ..++...
T Consensus 78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~--~~~~~~~g~ 153 (307)
T 3r7w_A 78 FQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNL--SETSSEFGF 153 (307)
T ss_dssp HTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHH--HHHHHTTTC
T ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHH--HHHHHHcCC
Confidence 999999999999999999998866543 33322 4479999999999998732222 111111 1222233
Q ss_pred -eEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 160 -LYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 160 -~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.+++++|||++ .|+.++|..+++.+.
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 47999999999 899999999887654
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-27 Score=176.25 Aligned_cols=166 Identities=20% Similarity=0.193 Sum_probs=124.3
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeeccccccc-ceEEEEEEcCCCCCch----------
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCK-GINFLIWDVGGQEKLR---------- 82 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~---------- 82 (202)
+...+.-.|+++|.+|||||||+|+|++..+....+..+++........ ... ...+.+|||||.....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~-~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVK-NIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE-EETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEE-ecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 4566788999999999999999999999988766666666655544433 334 7889999999985543
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC-CCcCHHHHHHHhCchhhcCcceE
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP-NAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
.....+++.+|++++|+|++++.+......|+..+... +.|+++|+||+|+. ...........+.. . .....
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~----~~pvilV~NK~Dl~~~~~~~~~~~~~l~~-~--~~~~~ 156 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL----NKPVIVVINKIDKIGPAKNVLPLIDEIHK-K--HPELT 156 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG----CCCEEEEEECGGGSSSGGGGHHHHHHHHH-H--CTTCC
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc----CCCEEEEEECccCCCCHHHHHHHHHHHHH-h--ccCCC
Confidence 56778889999999999999888888766556655543 78999999999997 43333332222211 0 11346
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
+++++||++|.|++++++++.+.+.+
T Consensus 157 ~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 157 EIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 79999999999999999999987743
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-27 Score=169.80 Aligned_cols=167 Identities=17% Similarity=0.090 Sum_probs=114.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCCCC----------Cchhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE----------KLRPL 84 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~ 84 (202)
....++|+|+|.+|+|||||+++|++..+ ....++.+.+...............+.+|||||.. .+...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 45689999999999999999999999873 44555555555544433322455789999999943 33555
Q ss_pred HHhhhcC---CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC----
Q psy1315 85 WKSYTRC---TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN---- 157 (202)
Q Consensus 85 ~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---- 157 (202)
+..+++. +|++++|+|+++..+.. ...++..+.. .+.|+++|+||+|+............+.. .+..
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-~l~~~~~~ 179 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQK-SLDAYRDA 179 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHH-HHHhhhhc
Confidence 6666665 78899999998653322 2223333333 27899999999999875433222221111 1111
Q ss_pred --cceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 158 --MHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 158 --~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
....+++++||++|.|+++++++|.+.+...
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 3678999999999999999999999988654
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-27 Score=173.42 Aligned_cols=156 Identities=22% Similarity=0.261 Sum_probs=111.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh------hHHhhh-
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP------LWKSYT- 89 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~- 89 (202)
.+.++|+++|++|||||||+++|.+..+. .....|++.......+ ......+.+||+||...+.. ....++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVF-TYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEE-EETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEE-EECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 45789999999999999999999987754 2223354544444333 44568999999999877654 335555
Q ss_pred -cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 90 -RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 90 -~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
..+|++++|+|+++.++... ++..+... +.|+++|+||+|+........ ....+....+++++++||
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~~---~~~~l~~~----~~pvilv~NK~Dl~~~~~i~~-----~~~~l~~~lg~~vi~~SA 148 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSLY---LLLEILEM----EKKVILAMTAIDEAKKTGMKI-----DRYELQKHLGIPVVFTSS 148 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHHH---HHHHHHTT----TCCEEEEEECHHHHHHTTCCB-----CHHHHHHHHCSCEEECCT
T ss_pred hcCCCEEEEEeCCCchhhHHH---HHHHHHhc----CCCEEEEEECcCCCCccchHH-----HHHHHHHHcCCCEEEEEe
Confidence 58999999999998665433 44444443 799999999999854321110 011122234578999999
Q ss_pred ecCCCHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLIL 186 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~ 186 (202)
++|.|++++|+++.+.+.
T Consensus 149 ~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 149 VTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHhh
Confidence 999999999999998764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-27 Score=167.35 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=108.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCC-----------CCCchhhHHh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG-----------QEKLRPLWKS 87 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~ 87 (202)
++|+++|++|||||||++++.+..+. .+.+ +.+.....+.. . .+.+||||| ++.+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~t~~~~~~~~-~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEW-K----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEE-T----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCC--CccceeEEEec-C----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 68999999999999999999988765 2333 33333333322 1 689999999 5566777778
Q ss_pred hhcC-CCEEEEEEeCCCchhHHHHH-HHHHH--------HHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhh-c
Q psy1315 88 YTRC-TDGIIFVIDSTDVERMEEVK-IELIK--------TIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYEL-N 156 (202)
Q Consensus 88 ~~~~-~d~~ilv~d~~~~~s~~~~~-~~~~~--------~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-~ 156 (202)
+++. ++++++|+++.+..++.... .|... +.......+.|+++|+||+|+.... ....+........ .
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPL 153 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCG
T ss_pred HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhh
Confidence 8877 77777777777777887763 33321 1111122379999999999997654 2222222111110 0
Q ss_pred CcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 157 NMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 157 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
.....++++|||++|.|++++|++|.+.+.+.+.
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 0113468999999999999999999998876543
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=163.61 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=111.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCch------hhHHhhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR------PLWKSYTR 90 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~ 90 (202)
+.++|+++|++|||||||+++|.+..+. ...++.........+ ......+.+|||||++.+. ..+..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEF---EYNGEKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEE---EETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEE---EeCCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 5789999999999999999999987543 233433333333333 3345789999999988764 45666664
Q ss_pred --CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH-HHHHHhCchhhcCcceEEEEEee
Q psy1315 91 --CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK-QIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 91 --~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
.+|++++|+|.++ ++....|+..+... +.|+++|+||+|+....... ... .+....+++++++|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~------~~~~~~~~~~~~~S 149 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLMEM----GANLLLALNKMDLAKSLGIEIDVD------KLEKILGVKVVPLS 149 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHTT----TCCEEEEEECHHHHHHTTCCCCHH------HHHHHHTSCEEECB
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHhc----CCCEEEEEEhhhccccccchHHHH------HHHHHhCCCeEEEE
Confidence 4999999999964 55555666665542 78999999999985432111 111 11122346899999
Q ss_pred eecCCCHHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~ 189 (202)
|+++.|++++|+++.+.+.+..
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC-
T ss_pred ecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999886654
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=169.38 Aligned_cols=159 Identities=19% Similarity=0.170 Sum_probs=113.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--------chhhHHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--------LRPLWKSY 88 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~ 88 (202)
.+..+|+++|.+|+|||||+|+|++..+....+..+++........ ......+.+|||||... +......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~-~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL-TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE-EETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE-EeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 3566899999999999999999999887655444444444333222 34577899999999776 45567788
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++.+|++++|+|++++.+.. ..|+...+... ..+.|+++|+||+|+...... +...+. .+ ....+++++||
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~--~~~~~~--~~--~~~~~~~~iSA 154 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEE--AMKAYH--EL--LPEAEPRMLSA 154 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHH--HHHHHH--HT--STTSEEEECCT
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHH--HHHHHH--Hh--cCcCcEEEEeC
Confidence 99999999999998764433 34554444432 247899999999999764330 112111 11 22346899999
Q ss_pred ecCCCHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLI 185 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~ 185 (202)
++|.|++++++.|.+.+
T Consensus 155 ~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 155 LDERQVAELKADLLALM 171 (301)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998765
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-26 Score=183.59 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=121.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC----------CCCchhhHH
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----------QEKLRPLWK 86 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~~ 86 (202)
...++|+++|.+|+|||||+++|.+.......+..+++.......+ ......+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSF-TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEE-EETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEE-EECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 4679999999999999999999998765434444444444332222 23445899999999 566666555
Q ss_pred -hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEE
Q psy1315 87 -SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 87 -~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 163 (202)
.+++.+|++|+|+|+++..... ...++..+.. .+.|+++|+||+|+.+... ..+....+.. .+......++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 345 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRD-HFQFLDYAPI 345 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHH-HCGGGTTSCE
T ss_pred HHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHH-hcccCCCCCE
Confidence 4788999999999998643322 2223333333 2799999999999976433 2333333321 1112345789
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
+++||++|.|++++|+.+.+.+.+...+.++..+|+
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~ 381 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLND 381 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 999999999999999999999998888888777765
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-26 Score=183.61 Aligned_cols=163 Identities=20% Similarity=0.251 Sum_probs=113.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEee------cccc-cccceEEEEEEcCCCCCchhhHH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVK------GQIG-KCKGINFLIWDVGGQEKLRPLWK 86 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~D~~G~~~~~~~~~ 86 (202)
...+.+||+++|.+|||||||++++.+..+. .+.+|.+.+..... +... ++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567899999999999999999999998875 55678777766542 2121 23468999999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEE
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 164 (202)
.+++++|++|+|||+++.+ ....|+..+... ..+.|+++|+||+|+..... ........ ...+.+++
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~--~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~------~~~~~~~~ 185 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINERF------PAIENRFH 185 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GHHHHHHHHHHH--SSSCCEEEEECCTTTCTTCCCCHHHHHHHC------GGGTTCEE
T ss_pred HHccCCcEEEEEEeCCCch---hHHHHHHHHHHh--CCCCCEEEEEECCCcccccccCHHHHHHHH------HhcCCceE
Confidence 9999999999999997654 344455555543 23689999999999976433 33344433 23345799
Q ss_pred EeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
++||++|.|++++++.+.+.+.+.
T Consensus 186 ~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 186 RISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp ECCC-----CTTHHHHHHHHHTCT
T ss_pred EEecCcccCHHHHHHHHHHHHhcc
Confidence 999999999999999999988654
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-26 Score=170.75 Aligned_cols=152 Identities=21% Similarity=0.256 Sum_probs=107.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch------hhHHhhhc-
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR------PLWKSYTR- 90 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~- 90 (202)
..++|+++|++|||||||+++|.+.... ....+|++.......+ .. ...+.+|||||+..+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~-~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLV-KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEEC-TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEE-ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 3589999999999999999999987532 2222355554443333 33 6679999999988765 45666765
Q ss_pred -CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH-HHHHHhCchhhcCcceEEEEEeee
Q psy1315 91 -CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK-QIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 91 -~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
.+|++|+|+|+++.++.. .|...+... +.|+++|+||+|+....... ... .+....+++++++||
T Consensus 79 ~~~d~vi~V~D~t~~e~~~---~~~~~l~~~----~~p~ilv~NK~Dl~~~~~~~~~~~------~l~~~lg~~vi~~SA 145 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL---YLTTQLIET----GIPVTIALNMIDVLDGQGKKINVD------KLSYHLGVPVVATSA 145 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH---HHHHHHHHT----CSCEEEEEECHHHHHHTTCCCCHH------HHHHHHTSCEEECBT
T ss_pred CCCCEEEEEecCCchHhHH---HHHHHHHhc----CCCEEEEEEChhhCCcCCcHHHHH------HHHHHcCCCEEEEEc
Confidence 599999999998755443 344444432 78999999999985422111 111 111233568999999
Q ss_pred ecCCCHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLI 185 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~ 185 (202)
++|.|++++|+++.+.+
T Consensus 146 ~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp TTTBSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999999998865
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.6e-27 Score=171.55 Aligned_cols=151 Identities=21% Similarity=0.170 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh----------hHHhhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP----------LWKSYT 89 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~ 89 (202)
.+|+++|.+|||||||+|+|.+.... ....++++........ ......+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-v~~~pg~Tv~~~~~~~-~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEF-LLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE-EEECTTSSSEEEEEEE-EETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-ccCCCCceEEEEEEEE-EECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988642 2223344433333222 33456899999999876653 556677
Q ss_pred --cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 90 --RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 90 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++|++|+|+|+++.++...+..+ +.. .+.|+++|+||+|+........... .+....+++++++|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~~~~~~~~~-----~l~~~lg~~vi~~S 147 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEHRGISIDTE-----KLESLLGCSVIPIQ 147 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHHTTCEECHH-----HHHHHHCSCEEECB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCcCCcHHHHH-----HHHHHcCCCEEEEE
Confidence 889999999999876555443333 222 2789999999999854321111011 11123357899999
Q ss_pred eecCCCHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQL 184 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~ 184 (202)
|++|.|++++++++.+.
T Consensus 148 A~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 148 AHKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGGTBSHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 99999999999999775
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-26 Score=172.10 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=107.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh----------hHHh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP----------LWKS 87 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~ 87 (202)
+.++|+++|.+|||||||+|+|++..+ ......|++.......+ ......+.+|||||...+.. ....
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEE-ECSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEE-EeCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999998874 23333444444433322 33456789999999876552 2333
Q ss_pred hh--cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 88 YT--RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 88 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
++ +.+|++|+|+|+++.++......++.. . +.|+++|+||+|+.......... ..+....++++++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~---~----~~p~ivv~NK~Dl~~~~~~~~~~-----~~l~~~lg~~~i~ 147 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLE---L----GIPCIVALNMLDIAEKQNIRIEI-----DALSARLGCPVIP 147 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH---H----TCCEEEEEECHHHHHHTTEEECH-----HHHHHHHTSCEEE
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHh---c----CCCEEEEEECccchhhhhHHHHH-----HHHHHhcCCCEEE
Confidence 33 789999999999876555444444333 2 78999999999985432111000 1111233578999
Q ss_pred eeeecCCCHHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+||++|.|+++++++|.+.+.
T Consensus 148 ~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 148 LVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp CCCGGGHHHHHHHHHHHTCCC
T ss_pred EEcCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=165.83 Aligned_cols=170 Identities=18% Similarity=0.157 Sum_probs=117.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch---------hhHHh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR---------PLWKS 87 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~ 87 (202)
...++|+++|.+|||||||+++|.+.... .....+.+........ ......+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQF-EDGYFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-EECCTTCSSCEEEEEE-EETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCeeeceeEEEE-EecCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 57899999999999999999999987642 1111111111111111 2345789999999964321 12223
Q ss_pred hhcCCCEEEEEEeCCCch--hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 88 YTRCTDGIIFVIDSTDVE--RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
+...+|++++|+|++++. ++.....|+..+..... +.|+++|+||+|+............+ ...+.++++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~------~~~~~~~~~ 314 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFV------KEKGLNPIK 314 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHH------HHTTCCCEE
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHH------HhcCCCeEE
Confidence 445699999999998876 67777777776665422 79999999999997654333332222 124567999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHhhhhhhh
Q psy1315 166 TCAITGDGLHEGINELYQLILKKRKLQKTNK 196 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~ 196 (202)
+||++|+|+++++++|.+.+.....+.....
T Consensus 315 iSA~~g~gi~~l~~~i~~~l~~~~~~~~~~~ 345 (357)
T 2e87_A 315 ISALKGTGIDLVKEEIIKTLRPLAEKVAREK 345 (357)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHHHHHHHHHHhhhcchh
Confidence 9999999999999999999876655444433
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.2e-26 Score=162.74 Aligned_cols=153 Identities=23% Similarity=0.261 Sum_probs=102.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC---
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC--- 91 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~--- 91 (202)
...+.++|+++|++|+|||||+++|.+..+....+....+. .. ......+.+||+||++.+...+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~---~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS---AA---DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE---ET---TGGGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE---EE---EeeCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 45678999999999999999999999887654221111111 11 1245678999999999998888888887
Q ss_pred -CCEEEEEEeCC-CchhHHHHHHHHHHHHccC---CCCCCcEEEEeeCCCCCCCcCHHHHHHHhC--chhhcCcceEEEE
Q psy1315 92 -TDGIIFVIDST-DVERMEEVKIELIKTIKNN---DNFNVPILILANKQDLPNAIQIKQIEKLLG--LYELNNMHLYYIQ 164 (202)
Q Consensus 92 -~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 164 (202)
+|++|+|+|++ +++++.....|+..+.... ...+.|+++|+||+|+........+...+. ...+....+.+++
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 161 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLN 161 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999 8889998888887776542 235899999999999987765443322211 1122223344566
Q ss_pred EeeeecCCC
Q psy1315 165 ATCAITGDG 173 (202)
Q Consensus 165 ~~Sa~~~~~ 173 (202)
++||+++.+
T Consensus 162 ~~Sa~~~~~ 170 (218)
T 1nrj_B 162 EVERKINEE 170 (218)
T ss_dssp C--------
T ss_pred ccccccccc
Confidence 666666543
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-25 Score=176.11 Aligned_cols=160 Identities=18% Similarity=0.128 Sum_probs=96.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhH--------Hh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLW--------KS 87 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~ 87 (202)
..+.++|+++|.+|+|||||+|+|.+.......+..+++.......+ ....+.+.+|||||...+...+ ..
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i-~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECF-IHDKTMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEE-EETTEEEEEEC--------------------C
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEE-EECCeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 34578999999999999999999998865444444455554433333 3456789999999987655433 44
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++.+|++|+|+|++++.++.....+. .+..... +.|+++|+||+|+........ +. +. .....+++++|
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~-~~l~~l~--~~piIvV~NK~Dl~~~~~~~~-~~-l~-----~~~~~~~i~vS 378 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIR-ELKAAHP--AAKFLTVANKLDRAANADALI-RA-IA-----DGTGTEVIGIS 378 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHH-HHHHHCT--TSEEEEEEECTTSCTTTHHHH-HH-HH-----HHHTSCEEECB
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHH-HHHHhcC--CCCEEEEEECcCCCCccchhH-HH-HH-----hcCCCceEEEE
Confidence 678899999999999887775322211 1222211 689999999999977644322 11 11 11125789999
Q ss_pred eecCCCHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLIL 186 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~ 186 (202)
|++|.|+++++++|.+.+.
T Consensus 379 Aktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 379 ALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTTBSHHHHHHHHTHHHH
T ss_pred ECCCCCHHHHHHHHHHHHh
Confidence 9999999999999999886
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-25 Score=172.84 Aligned_cols=176 Identities=15% Similarity=0.178 Sum_probs=118.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh------------H
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL------------W 85 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------------~ 85 (202)
..++|+++|++|||||||+|++.+.......+..+++.......+ ......+.+|||||..+.... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i-~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEV-FIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEE-EETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEE-EECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 468999999999999999999998876545555555544333222 223447899999996432211 2
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 163 (202)
..+++.+|++++|+|+++..+.... ++...... .+.|+++|+||+|+.+... ..+....+. ..+......++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 331 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFR-EKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHH-HHCGGGTTSCE
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHH-HHhccCCCCcE
Confidence 3467789999999999876665542 22222222 2789999999999976432 233322221 11223345689
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRKLQKTNKMNKV 200 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~ 200 (202)
+++||++|.|++++|+.+.+.+.+...+.+++.+|++
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~ 368 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSA 368 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 9999999999999999999999888888888887753
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-25 Score=164.37 Aligned_cols=154 Identities=22% Similarity=0.222 Sum_probs=109.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh------hHHhhh--
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP------LWKSYT-- 89 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~-- 89 (202)
+.++|+++|++|||||||+++|.+..+ ......+.+........ ......+.+||+||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIM-EYREKEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEE-EETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEE-EECCceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 358999999999999999999998876 33333333333332222 33556799999999877655 566666
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC----cCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA----IQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
.++|++++|+|+++.+ ....++..+... ...|+++|+||+|+... .....+. ...++++++
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~---------~~lg~~~~~ 144 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMR---------KELGVPVIP 144 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHH---------HHHSSCEEE
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHH---------HHcCCcEEE
Confidence 6899999999998643 333444454443 13899999999997532 1222222 233578999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+||++|.|++++++.+.+.+...
T Consensus 145 ~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 145 TNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp CBGGGTBTHHHHHHHHHHHHHTC
T ss_pred EEeCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999887543
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-25 Score=172.61 Aligned_cols=155 Identities=16% Similarity=0.239 Sum_probs=102.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC--------CchhhHHhhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE--------KLRPLWKSYTR 90 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~ 90 (202)
.++|+++|.+|||||||+|+|.+..+..+.+++|++.+...... ......+.+|||||.+ .+..++..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA-EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEEC-TTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEE-EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 36899999999999999999999887767778888776665544 4456689999999975 56677888899
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
.+|++|+|+|+.++.+... .++...+.. .++|+++|+||+|+..... ... .+......+++++||++
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~-----~~~---~~~~lg~~~~~~iSA~~ 148 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA-----NIY---DFYSLGFGEPYPISGTH 148 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC----------CCC---SSGGGSSCCCEECBTTT
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh-----hHH---HHHHcCCCCeEEEeCcC
Confidence 9999999999987655543 344444432 3789999999999865321 111 11111112678999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLILK 187 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~ 187 (202)
|.|++++++++.+.+.+
T Consensus 149 g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 149 GLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp TBTHHHHHHHHHHTGGG
T ss_pred CCChHHHHHHHHHhcCc
Confidence 99999999999987753
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-24 Score=166.00 Aligned_cols=169 Identities=15% Similarity=0.046 Sum_probs=116.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCcccccccee--------------eEe----ecccccccceEEEEEEcC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNC--------------EKV----KGQIGKCKGINFLIWDVG 76 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~--------------~~~----~~~~~~~~~~~~~~~D~~ 76 (202)
..++.++|+++|++++|||||+++|.+............+. ... ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 45678999999999999999999999854322110000000 000 000001223789999999
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCch-hh
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLY-EL 155 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-~~ 155 (202)
|++.+...+..++..+|++|+|+|+++..++.....++..+.... ..|+++|+||+|+.+..........+... ..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998766777666665544331 35899999999998754332222211100 00
Q ss_pred cCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 156 NNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 156 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
....+++++++||++|.|+++++++|.+.+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 1124678999999999999999999988664
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=171.21 Aligned_cols=155 Identities=24% Similarity=0.289 Sum_probs=112.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC-Cch--------hhHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-KLR--------PLWKSY 88 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~~~--------~~~~~~ 88 (202)
..++|+++|.||+|||||+|+|.+..+....+..++|.+.....+ ..+...+.+|||||.. .+. .....+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i-~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEI-VIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEE-EETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEE-ecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 348999999999999999999998865444444444443332222 3346789999999987 543 234567
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++.+|++|+|+|++++.++.... .+ ... .+.|+++|+||+|+.......++.... ..+.+++++||
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~-------~~~~~~i~iSA 386 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKL-------GTDRHMVKISA 386 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHH-------TCSTTEEEEEG
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHh-------cCCCcEEEEEC
Confidence 88999999999999887776532 22 222 278999999999997654444443322 12356899999
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILK 187 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~ 187 (202)
++|.|+++++++|.+.+..
T Consensus 387 ktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 387 LKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp GGTCCHHHHHHHHHHHTHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999997653
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-25 Score=172.89 Aligned_cols=160 Identities=14% Similarity=0.057 Sum_probs=107.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh-------HHh
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL-------WKS 87 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-------~~~ 87 (202)
.....++|+|+|+.|+|||||+++|++..+....+..+.+...............+.+|||||+..+... ...
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 3457899999999999999999999988775444444444333322221122348999999998765443 566
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
++.++|++|+|+|+... .....|+..+... +.|+++|+||+|+.........+.. ....+++++++|
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~~~~~~l------~~~~g~~v~~vS 176 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAEELKGLY------ESRYEAKVLLVS 176 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCTHHHHHS------SCCTTCCCCCCS
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHHHHHHHH------HHHcCCCEEEEE
Confidence 88999999999999432 2234454444443 7899999999999876654333332 234567899999
Q ss_pred eecCCCHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILK 187 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~ 187 (202)
|++|.|++++|++|.+.+.+
T Consensus 177 Aktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHhhhh
Confidence 99999999999999998743
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-24 Score=169.95 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=100.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC---------chhhHHhhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---------LRPLWKSYTR 90 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~ 90 (202)
.+|+++|.||||||||+|+|.+.+...+.+++|+|.+...... ......+.+|||||.+. +..++..+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTV-EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEE-EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEE-EECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 4799999999999999999999876555566666655444333 33456799999999664 3456778899
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHH-HHHhCchhhcCcceE-EEEEeee
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQI-EKLLGLYELNNMHLY-YIQATCA 168 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa 168 (202)
++|++|+|+|+.++.+... .++...+.. .++|+++|+||+|+.... .... ..+. . .++ +++++||
T Consensus 81 ~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~------~-lg~~~~~~iSA 147 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELY------S-LGFGEPIPVSA 147 (439)
T ss_dssp TCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG------G-GSSCSCEECBT
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH------h-cCCCCEEEEec
Confidence 9999999999986544432 222222222 168999999999975321 1111 1211 1 122 5789999
Q ss_pred ecCCCHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~ 188 (202)
++|.|++++++++.+.+.+.
T Consensus 148 ~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 148 EHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcccc
Confidence 99999999999999988643
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=158.67 Aligned_cols=125 Identities=24% Similarity=0.370 Sum_probs=99.5
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+.+.+.+||++|++.+...|..++++++++|+|||+++ .+++.....|+..+.......+.|+++|+||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 46789999999999999999999999999999999998 57799999999988876445689999999999
Q ss_pred CCCC-----------------CcCHHHHHHHhCch--hhc---CcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 136 DLPN-----------------AIQIKQIEKLLGLY--ELN---NMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 136 Dl~~-----------------~~~~~~~~~~~~~~--~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+.. .....+...++... .+. ...++++++|||+++.||+++|+++.+.+.+...
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence 9842 12334444433210 010 1357899999999999999999999999876543
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-23 Score=161.87 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=106.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC------------------------------ccccccceeeEeeccccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN------------------------------TVPTIGFNCEKVKGQIGK 64 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 64 (202)
..+..++|+++|++++|||||+++|++..... .....|.+.......+ .
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~-~ 91 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYF-E 91 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEE-e
Confidence 35678999999999999999999996542110 0111344444433333 4
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchh---HH---HHHHHHHHHHccCCCCCCc-EEEEeeCCCC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVER---ME---EVKIELIKTIKNNDNFNVP-ILILANKQDL 137 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl 137 (202)
.....+.+|||||+++|...+..++..+|++|+|+|+++... |. .....+...... +.| +++|+||+|+
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~----~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA----GVKHLIVLINKMDD 167 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc----CCCeEEEEeecCCC
Confidence 456789999999999999999999999999999999987532 11 222222222222 566 9999999999
Q ss_pred CCCcC----HH----HHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 138 PNAIQ----IK----QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 138 ~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
..... .. ++..++....+.....++++++||++|.|++++.+
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 64321 11 12222221111111257899999999999999765
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.8e-24 Score=166.83 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=102.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh--------HHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL--------WKSY 88 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 88 (202)
...++|+++|++|+|||||+|+|.+..+....+..+++.......+ ..+...+.+|||||...+... ...+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i-~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQL-VVGGIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEE-EETTEEEEECC--------------------CC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEE-EECCEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3568999999999999999999998765433333343333322222 335578999999997554433 2335
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++.+|++++|+|++++.+... ..++..+ . ..|+++|+||+|+....... .. ..+ ....+++++||
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-~-----~~piivV~NK~Dl~~~~~~~----~~--~~~--~~~~~~i~iSA 365 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV-K-----HRPLILVMNKIDLVEKQLIT----SL--EYP--ENITQIVHTAA 365 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH-T-----TSCEEEEEECTTSSCGGGST----TC--CCC--TTCCCEEEEBT
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc-c-----CCcEEEEEECCCCCcchhhH----HH--HHh--ccCCcEEEEEC
Confidence 788999999999998766554 2233332 2 36999999999997654322 11 111 13567999999
Q ss_pred ecCCCHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~ 188 (202)
++|.|+++++++|.+.+...
T Consensus 366 ktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 366 AQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp TTTBSHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999987543
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-25 Score=175.76 Aligned_cols=162 Identities=20% Similarity=0.168 Sum_probs=112.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
++.++|+++|++++|||||+++|.+..+. ...++.........+.. .....+.+|||||++.|..++..+++.+|++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~--~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~v 79 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL--PSGEKITFLDTPGHAAFSAMRARGTQVTDIV 79 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS--SCSSCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe--CCCCEEEEEECCChHHHHHHHHHHHccCCEE
Confidence 45789999999999999999999876653 22222222222222211 2345789999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC---HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ---IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
|+|+|+++........ .+...... +.|+++|+||+|+.+... ...+... ....-.....++++++||++|.
T Consensus 80 ILVVDa~dg~~~qt~e-~l~~~~~~----~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~~~e~~~~~~~iv~vSAktG~ 153 (537)
T 3izy_P 80 ILVVAADDGVMKQTVE-SIQHAKDA----HVPIVLAINKCDKAEADPEKVKKELLAY-DVVCEDYGGDVQAVHVSALTGE 153 (537)
T ss_dssp EEECBSSSCCCHHHHH-HHHHHHTT----TCCEEECCBSGGGTTTSCCSSSSHHHHT-TSCCCCSSSSEEECCCCSSSSC
T ss_pred EEEEECCCCccHHHHH-HHHHHHHc----CCcEEEEEecccccccchHHHHHHHHhh-hhhHHhcCCCceEEEEECCCCC
Confidence 9999999855444433 33333332 789999999999975321 1222221 1100011235799999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLIL 186 (202)
Q Consensus 173 ~v~~l~~~l~~~~~ 186 (202)
|++++++++..++.
T Consensus 154 GI~eLle~I~~l~~ 167 (537)
T 3izy_P 154 NMMALAEATIALAE 167 (537)
T ss_dssp SSHHHHHHHHHHHT
T ss_pred CchhHHHHHHHhhh
Confidence 99999999988764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-23 Score=155.38 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=106.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC-C--------chhhHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-K--------LRPLWKSY 88 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~--------~~~~~~~~ 88 (202)
+..+|+++|++|+|||||++++++..+....+..+.+........ ......+.+|||||.. . +......+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~-~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH-TEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE-EETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEE-EECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 456899999999999999999999876544444444433222212 3456789999999987 2 22334556
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE-EEEEee
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY-YIQATC 167 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S 167 (202)
++.+|++++|+|+++ +.....++...... .+.|+++|+||+|+... .......+. .+....++ .++++|
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~--~l~~~~~~~~~i~iS 155 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQ--FLASQMNFLDIVPIS 155 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHH--HHHTTSCCSEEEECC
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHH--HHHHhcCcCceEEEE
Confidence 788999999999976 33333344444332 27899999999999762 122222111 11122233 689999
Q ss_pred eecCCCHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLI 185 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~ 185 (202)
|+++.|++++++.+.+.+
T Consensus 156 A~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 156 AETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp TTTTTTHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999998654
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-23 Score=157.16 Aligned_cols=159 Identities=23% Similarity=0.250 Sum_probs=111.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-cccccceeeEeecccccccceEEEEEEcCCC----CCchhhHHhhh---
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ----EKLRPLWKSYT--- 89 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~~~~~~~~~~~--- 89 (202)
.+|+++|.+|||||||+++|.+.... .+ ..|...+...+.+ .....+.+||+||. ..+..+...++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~----~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET----DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC----SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEe----CCCceEEEecCCCCcccccccchhHHHHHHHH
Confidence 46899999999999999999987532 11 1233333333333 22357999999994 33434444444
Q ss_pred cCCCEEEEEEeCCC---chhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcCcceEEEE
Q psy1315 90 RCTDGIIFVIDSTD---VERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 90 ~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 164 (202)
+.+|++|+|+|+++ ++++.....|+..+..... ..++|+++|+||+|+..... ...+...+. ...+++
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~-------~~~~v~ 307 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT-------DDYPVF 307 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC-------SCCCBC
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh-------cCCCEE
Confidence 45999999999988 7888888877777765421 34899999999999975421 111222111 116789
Q ss_pred EeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++||++++|+++++++|.+.+.+.+
T Consensus 308 ~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 308 PISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp CCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred EEECCCCcCHHHHHHHHHHHHhhCc
Confidence 9999999999999999999886543
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-23 Score=156.71 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=95.2
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCC----------CchhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDST----------DVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
..+.+++|||+|++.+...|..|+++++++|+|||++ +.+++.....|+..+.......+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4688999999999999999999999999999999998 788999999999888775445689999999999
Q ss_pred CCCCCcC-----------------------HHHHHHHhCchhh------c-----CcceEEEEEeeeecCCCHHHHHHHH
Q psy1315 136 DLPNAIQ-----------------------IKQIEKLLGLYEL------N-----NMHLYYIQATCAITGDGLHEGINEL 181 (202)
Q Consensus 136 Dl~~~~~-----------------------~~~~~~~~~~~~~------~-----~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (202)
|+..+.. .++...++.. .+ . ....+.+++|||+++.||+++|+++
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~-~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKK-KFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHH-HHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHH-HHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 9843210 1222222111 10 0 0235678999999999999999999
Q ss_pred HHHHHHHHh
Q psy1315 182 YQLILKKRK 190 (202)
Q Consensus 182 ~~~~~~~~~ 190 (202)
.+.+.+.+.
T Consensus 340 ~~~I~~~~l 348 (354)
T 2xtz_A 340 DETLRRRNL 348 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876654
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-23 Score=144.34 Aligned_cols=129 Identities=28% Similarity=0.346 Sum_probs=94.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC----
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC---- 91 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~---- 91 (202)
..+.++|+++|++|||||||+++|.+..+.....+...+.. . ....+.+.+||+||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 118 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---A---DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 118 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---e---eecCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence 45789999999999999999999998876432111111110 1 1244578999999999888888887776
Q ss_pred CCEEEEEEeCC-CchhHHHHHHHHHHHHccC---CCCCCcEEEEeeCCCCCCCcCHHHHHHHh
Q psy1315 92 TDGIIFVIDST-DVERMEEVKIELIKTIKNN---DNFNVPILILANKQDLPNAIQIKQIEKLL 150 (202)
Q Consensus 92 ~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~pvivv~nK~Dl~~~~~~~~~~~~~ 150 (202)
+|++|+|||++ +.+++.....|+..+.... ...+.|+++|+||+|+.+......+...+
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 89999999999 8889998888887776532 23479999999999998876666555443
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=163.29 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=85.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCC------------------CCc---cccccceeeEeecccccccceEEEEEEc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQY------------------LNT---VPTIGFNCEKVKGQIGKCKGINFLIWDV 75 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (202)
++..+|+++|++|+|||||+++|++... ... ....|.+........ ....+.+++|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~~i~liDT 89 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQF-PYKDYLINLLDT 89 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEE-EETTEEEEEECC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEE-EeCCEEEEEEEC
Confidence 4578999999999999999999962211 000 001122222222222 345788999999
Q ss_pred CCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc
Q psy1315 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141 (202)
Q Consensus 76 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 141 (202)
||+.++...+..+++.+|++|+|+|+++........ .|..+... ++|+++|+||+|+....
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~~----~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRLR----HTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHTT----TCCEEEEEECTTSCCSC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHHc----CCCEEEEEeCCCCcccc
Confidence 999999999999999999999999999866665544 33333333 78999999999997643
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=154.82 Aligned_cols=125 Identities=25% Similarity=0.372 Sum_probs=92.4
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+.+.+.+||++|++.+...|..++++++++|+|||+++ .+++.....|+..+.......+.|+|+++||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 46789999999999999999999999999999999998 78999999999988876445689999999999
Q ss_pred CCCCC------------------cCHHHHHHHh-----CchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 136 DLPNA------------------IQIKQIEKLL-----GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 136 Dl~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+..+ ....+...++ .+.......++++++|||+++.||+++|+++.+.+.+...
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 98521 2334444433 1111100346789999999999999999999999887654
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=152.37 Aligned_cols=124 Identities=23% Similarity=0.319 Sum_probs=99.4
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCC----------CchhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDST----------DVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+.+.+++||++|+++++..|..|+++++++|+|||++ +.+++.....|+..+.......+.|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 5688999999999999999999999999999999654 678899888899988876556689999999999
Q ss_pred CCCCC------------------cCHHHHHHHhC-----chhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 136 DLPNA------------------IQIKQIEKLLG-----LYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 136 Dl~~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+... ...++...++. .. .+...++.+++|||+++.||+++|+.+.+.+.+.+.
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~-~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLN-PDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSC-TTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhc-ccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence 98542 23334433321 11 123467889999999999999999999999886653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-23 Score=166.38 Aligned_cols=155 Identities=18% Similarity=0.245 Sum_probs=103.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC--------CCCchhhHHhhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG--------QEKLRPLWKSYT 89 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G--------~~~~~~~~~~~~ 89 (202)
...+|+++|.+|||||||+|+|.+..+....++.|++........ ......+.+||||| ++.+..+...++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~-~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA-EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC-TTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE-EECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 467999999999999999999999887766777788777666555 45567899999999 556777888899
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+.+|++|+|+|..+. +.....++...+.. .++|+++|+||+|+..... .. ...... ..+ ..+++||+
T Consensus 101 ~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~---~e~~~l--g~~-~~~~iSA~ 167 (456)
T 4dcu_A 101 DEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NI---YDFYSL--GFG-EPYPISGT 167 (456)
T ss_dssp HHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC--------------CCSGGG--SSS-SEEECCTT
T ss_pred hhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hH---HHHHHc--CCC-ceEEeecc
Confidence 999999999998753 33334455555543 3899999999999864311 11 111111 112 34699999
Q ss_pred cCCCHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLIL 186 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~ 186 (202)
+|.|+.++++.+.+.+.
T Consensus 168 ~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp TCTTHHHHHHHHHTTGG
T ss_pred cccchHHHHHHHHhhcc
Confidence 99999999999987664
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=161.77 Aligned_cols=165 Identities=19% Similarity=0.154 Sum_probs=107.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC----CC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ----YL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYT 89 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 89 (202)
..+.++|+++|++++|||||+++|.+.. .+ ......|.|.......+ ......+.+|||||++.+...+..++
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAF-KLENYRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEE-EETTEEEEECCCSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEE-EECCEEEEEEECCChHHHHHHHHHHH
Confidence 3468999999999999999999999876 21 11111222222211111 22457899999999999999999999
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchh-hc-CcceEEEEEee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYE-LN-NMHLYYIQATC 167 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~S 167 (202)
..+|++|+|+|+++... .....++..+... +.|+++|+||+|+.+..........+.... .. ...+.+++++|
T Consensus 95 ~~aD~~ilVvda~~g~~-~qt~e~l~~~~~~----~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vS 169 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPK-TQTGEHMLILDHF----NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS 169 (482)
T ss_dssp TSCCEEEEEEETTTCSC-HHHHHHHHHHHHT----TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred hhCCEEEEEEecCCCcc-HHHHHHHHHHHHc----CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEE
Confidence 99999999999987321 1112222222222 688899999999986433222222211100 00 12367899999
Q ss_pred eecCCCHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLIL 186 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~ 186 (202)
|++|.|+++++++|.+.+.
T Consensus 170 A~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 170 AKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhhc
Confidence 9999999999999998775
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=161.48 Aligned_cols=159 Identities=19% Similarity=0.160 Sum_probs=102.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 65 (202)
.+..++|+++|++++|||||+++|++.... ......|.+.......+ ..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~ 108 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF-ST 108 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEE-EC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEE-ec
Confidence 567899999999999999999999765211 01111244443333333 45
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHH-----HHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEE-----VKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
..+.+.+|||||++++...+..++..+|++|+|+|+++..++.. .......+... ....|+|||+||+|+.+.
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGTT
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCcccc
Confidence 66789999999999999999999999999999999998644322 12222222222 113579999999999763
Q ss_pred c--CHHHHHHHhCc--hhhc-CcceEEEEEeeeecCCCHHHH
Q psy1315 141 I--QIKQIEKLLGL--YELN-NMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 141 ~--~~~~~~~~~~~--~~~~-~~~~~~~~~~Sa~~~~~v~~l 177 (202)
. ...+....+.. ..+. ....++++++||++|.|++++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 2 12222222111 0110 123689999999999999863
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=160.70 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=109.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC--CC---------C---ccccccceee----EeecccccccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ--YL---------N---TVPTIGFNCE----KVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~--~~---------~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
++..+|+++|+.++|||||+++|++.. .. + .....|.+.. ...+...++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999997631 10 0 0111233322 2222111344588999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCc
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNM 158 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 158 (202)
.+|...+..+++.+|++|+|+|+++..+......|.... .. +.|+++|+||+|+............... + ..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~~----~ipiIvviNKiDl~~a~~~~v~~el~~~--l-g~ 155 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-EQ----DLVIIPVINKIDLPSADVDRVKKQIEEV--L-GL 155 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-HT----TCEEEEEEECTTSTTCCHHHHHHHHHHT--S-CC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-HC----CCCEEEEEeccCccccCHHHHHHHHHHh--h-CC
Confidence 999999999999999999999999887777666555443 22 7899999999999875422212221110 1 11
Q ss_pred ceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 159 HLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 159 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
...+++++||++|.|+++++++|.+.+.
T Consensus 156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 156 DPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp CGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 1124899999999999999999988764
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-22 Score=147.14 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=100.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc--cccccceeeEeecccccccceEEEEEEcCCCCCch----------
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT--VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR---------- 82 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------- 82 (202)
...+.++|+|+|++|||||||++++++...... .++ +++........ ......+.+|||||...+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~-~~~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQG-SWGNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEE-EETTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEE-EeCCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 345689999999999999999999998774322 222 12222111111 2345689999999965432
Q ss_pred -hhHHhhhcCCCEEEEEEeCCCchhH-HHHHHHHHHHHccCCCCCCcEEEEee-CCCCCCCcCHHH---------HHHHh
Q psy1315 83 -PLWKSYTRCTDGIIFVIDSTDVERM-EEVKIELIKTIKNNDNFNVPILILAN-KQDLPNAIQIKQ---------IEKLL 150 (202)
Q Consensus 83 -~~~~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~pvivv~n-K~Dl~~~~~~~~---------~~~~~ 150 (202)
.....+++.+|++|+|+|+++.... .....++...... ....|+++|+| |+|+.... ... ++..+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHH
Confidence 2233467889999999999863322 2233344443321 11346666666 99997542 222 11111
Q ss_pred CchhhcCcceEEE--EEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 151 GLYELNNMHLYYI--QATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 151 ~~~~~~~~~~~~~--~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
. .+ .....++ +++||+++.|++++|++|.+.+...
T Consensus 173 ~--~~-~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 173 A--AC-GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp H--HT-TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H--Hh-CCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 1 11 1111112 7899999999999999999988764
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-24 Score=168.25 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=105.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
.+.++|+++|++++|||||+++|.+..+... ...+.+.....+.+ ..+...+.+|||||++.|..++..++..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~-e~~GIT~~i~~~~v-~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASG-EAGGITQHIGAYHV-ETENGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBT-TBCCCCCCSSCCCC-CTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccc-cCCCeeEeEEEEEE-EECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4678999999999999999999987544311 11122221111111 223457899999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc-hhhcCc--ceEEEEEeeeecCCC
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL-YELNNM--HLYYIQATCAITGDG 173 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~Sa~~~~~ 173 (202)
+|+|+++....+ ....+...... +.|+++++||+|+.+.... .+...+.. ..+... ...+++++||++|.|
T Consensus 80 LVVda~~g~~~q-T~e~l~~~~~~----~vPiIVviNKiDl~~~~~~-~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 80 LVVAADDGVMPQ-TIEAIQHAKAA----QVPVVVAVNKIDKPEADPD-RVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEEETTTBSCTT-THHHHHHHHHT----TCCEEEEEECSSSSTTCCC-CTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EEeecccCccHH-HHHHHHHHHhc----CceEEEEEEeccccccCHH-HHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 999998732211 11222222222 7899999999999753211 11111110 011111 247899999999999
Q ss_pred HHHHHHHHHH
Q psy1315 174 LHEGINELYQ 183 (202)
Q Consensus 174 v~~l~~~l~~ 183 (202)
++++++++..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999999875
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=162.30 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=106.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-----------C---ccccccceeeE----eecccccccceEEEEEEcCCCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-----------N---TVPTIGFNCEK----VKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-----------~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
+..+|+++|+.++|||||+++|++.... + .....|.+... ..+...++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4679999999999999999999863210 0 11123333332 2221113446899999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcc
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMH 159 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 159 (202)
+|...+..+++.+|++|+|+|+++..+......|.... .. +.|+++|+||+|+.+............ .+ ...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~~----~ipiIvViNKiDl~~a~~~~v~~ei~~--~l-g~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-EM----DLEVVPVLNKIDLPAADPERVAEEIED--IV-GID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-HT----TCEEEEEEECTTSTTCCHHHHHHHHHH--HT-CCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-HC----CCCEEEeeeccCcccccHHHHHHHHHH--Hh-CCC
Confidence 99999999999999999999999877766666555443 22 789999999999987542221222111 01 111
Q ss_pred eEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 160 LYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 160 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..+++++||++|.|++++++++.+.+.
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCC
Confidence 224799999999999999999988764
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=152.93 Aligned_cols=165 Identities=20% Similarity=0.089 Sum_probs=102.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCC---C-Cccc--cccceeeEeeccc-------------cc-c----cceEEE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQY---L-NTVP--TIGFNCEKVKGQI-------------GK-C----KGINFL 71 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~---~-~~~~--~~~~~~~~~~~~~-------------~~-~----~~~~~~ 71 (202)
.+..++|+++|+.++|||||+++|.+... . +..+ |....+....+.. .. + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 35689999999999999999999985432 1 1122 3333222221100 00 1 126899
Q ss_pred EEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC----HHHHH
Q psy1315 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ----IKQIE 147 (202)
Q Consensus 72 ~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----~~~~~ 147 (202)
+|||||++.+...+...+..+|++|+|+|+++..........+..+... ...|+++|+||+|+.+... .+++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999988888888888899999999998643222222222222111 1358999999999976532 23344
Q ss_pred HHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 148 KLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..+... ...+.+++++||++|.|+++++++|.+.+.
T Consensus 162 ~~l~~~---~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 162 EFVKGT---IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHTTS---TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHhhc---CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 443311 124678999999999999999999987654
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-22 Score=160.10 Aligned_cols=162 Identities=22% Similarity=0.190 Sum_probs=110.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCc-----cccccceeeEeecc------c-----ccccceEEEEEEcCCCCCc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNT-----VPTIGFNCEKVKGQ------I-----GKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-----~~~~~~~~~~~~~~------~-----~~~~~~~~~~~D~~G~~~~ 81 (202)
+.++|+++|++++|||||+++|++..+... .++.+.+....... . .+.....+++|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 468999999999999999999987654322 23444333322110 0 0112236999999999999
Q ss_pred hhhHHhhhcCCCEEEEEEeCCC---chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--------------HH
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTD---VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--------------IK 144 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~~ 144 (202)
...+..+++.+|++|+|+|+++ +.++..+. .+.. .+.|+++++||+|+..... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 9999999999999999999998 44544433 2222 2789999999999964211 01
Q ss_pred H-----------HHHHhCchhh---------cCcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 145 Q-----------IEKLLGLYEL---------NNMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 145 ~-----------~~~~~~~~~~---------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
. +...+....+ ......+++++||++|.|+++++++|...+..
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 1 1111110000 01246799999999999999999999987753
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-22 Score=149.59 Aligned_cols=161 Identities=16% Similarity=0.194 Sum_probs=92.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-------cccccceeeEeecccccccceEEEEEEcCCCC-------C
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--NT-------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-------K 80 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-------~ 80 (202)
...++|+++|.+|+|||||+|+|++.... .+ .+|.+.+........ ++..+.+.+|||||.. .
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchhh
Confidence 35799999999999999999998876543 22 455566666555543 4455799999999962 2
Q ss_pred chhhH-------HhhhcC-------------CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 81 LRPLW-------KSYTRC-------------TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 81 ~~~~~-------~~~~~~-------------~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
+..+. ..++.. +|+++++++.... ++......+...+.. ++|+++|+||+|+...
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence 33333 344433 7899999977652 222222333333332 7899999999998765
Q ss_pred cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
.........+. ......+++++++||.+++|+++++++|.+.+
T Consensus 160 ~e~~~~~~~i~--~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 160 EECQQFKKQIM--KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHH--HHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHH--HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 43333222221 11123567789999999999999999987643
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-22 Score=156.76 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=101.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC---Cc----------cccc-------------------cceeeEeecccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL---NT----------VPTI-------------------GFNCEKVKGQIG 63 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---~~----------~~~~-------------------~~~~~~~~~~~~ 63 (202)
.+..++|+++|++++|||||+++|++.... .. ..+. |.+.......+
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~- 99 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF- 99 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe-
Confidence 456799999999999999999999865411 10 0111 12211111111
Q ss_pred cccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-
Q psy1315 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ- 142 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~- 142 (202)
......+.+|||||++.|...+..++..+|++|+|+|+++.... ....++...... ...|+++|+||+|+.+...
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHH
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHH
Confidence 33567899999999999999999999999999999999875432 233333333222 1246999999999976321
Q ss_pred -HH----HHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 143 -IK----QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 143 -~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
.. ++...+....+ .....+++++||++|.|++++++
T Consensus 176 ~~~~i~~~~~~~~~~~g~-~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAF-KPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTTC-CCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHHhCC-CccCceEEEEeccCCCCcccccc
Confidence 11 12222111000 12358999999999999998543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=148.38 Aligned_cols=163 Identities=21% Similarity=0.225 Sum_probs=101.6
Q ss_pred ccE-EEEEcCCCCCHHHHHHHhhcCCCCC---ccccccceeeEeecccccccceEEEEEEcCCCCC---------chhhH
Q psy1315 19 SVH-IVMLGLDSAGKTTALYRLKFDQYLN---TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---------LRPLW 85 (202)
Q Consensus 19 ~~~-i~v~G~~~~GKssL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~ 85 (202)
.++ |+++|.+|+|||||+|+|.+..... ...|...+...+.+ ....+.+|||+|... +...+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~-----~g~~v~l~DT~G~i~~lp~~lve~f~~tl 252 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-----NNRKIMLVDTVGFIRGIPPQIVDAFFVTL 252 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE-----TTEEEEEEECCCBCSSCCGGGHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE-----CCEEEEEEeCCCchhcCCHHHHHHHHHHH
Confidence 455 9999999999999999999876521 12232233333333 235789999999521 22222
Q ss_pred HhhhcCCCEEEEEEeCCCch--hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc-hhhcCcceEE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVE--RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL-YELNNMHLYY 162 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~ 162 (202)
..+..+|++++|+|++++. .......+. ..+......+.|+++|+||+|+.+............. ..+ ...+.+
T Consensus 253 -~~~~~aD~il~VvD~s~~~~~~~~~~~~~~-~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l-~~~~~~ 329 (364)
T 2qtf_A 253 -SEAKYSDALILVIDSTFSENLLIETLQSSF-EILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKEL-YSPIFD 329 (364)
T ss_dssp -HGGGGSSEEEEEEETTSCHHHHHHHHHHHH-HHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHH-CSCEEE
T ss_pred -HHHHhCCEEEEEEECCCCcchHHHHHHHHH-HHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHh-cCCCCc
Confidence 3468899999999998876 444433332 2222223347899999999999764311111110000 011 022457
Q ss_pred EEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 163 IQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 163 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++||+++.|++++++.|.+.+....
T Consensus 330 ~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 330 VIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 899999999999999999998776543
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=151.56 Aligned_cols=148 Identities=11% Similarity=0.065 Sum_probs=107.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
+|+++|++++|||||+++|+ ....|....+... ......+.+|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~-----~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNN-----DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEE-----CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEE-----ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 2233444433333 2345679999999999999888888999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcE-EEEee-CCCCCCCcCHH----HHHHHhCchhhcCcceEEEEE--eeeec--
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPI-LILAN-KQDLPNAIQIK----QIEKLLGLYELNNMHLYYIQA--TCAIT-- 170 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pv-ivv~n-K~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~Sa~~-- 170 (202)
++ ..+.....++...... +.|. ++++| |+|+ +..... ++...++.. ....+++++ +||++
T Consensus 93 -~~-g~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~---~~~~~~ii~~~~SA~~~~ 162 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL----GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT---VLQDWECISLNTNKSAKN 162 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS---TTTTCEEEECCCCTTSSS
T ss_pred -CC-CCcHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc---CCCceEEEecccccccCc
Confidence 53 4455555555544333 5677 88899 9999 543222 233333211 113579999 99999
Q ss_pred -CCCHHHHHHHHHHHHHHH
Q psy1315 171 -GDGLHEGINELYQLILKK 188 (202)
Q Consensus 171 -~~~v~~l~~~l~~~~~~~ 188 (202)
+.|++++++.|.+.+...
T Consensus 163 ~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 163 PFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TTTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhcccc
Confidence 999999999999887654
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=151.45 Aligned_cols=125 Identities=23% Similarity=0.389 Sum_probs=98.0
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+.+.+.+|||+|++.+...|..|+++++++|+|||+++ .++|.....|+..+.......+.|++||+||+
T Consensus 215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECH
T ss_pred CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEECh
Confidence 34789999999999999999999999999999999998 89999999999998876556689999999999
Q ss_pred CCCCCcC--------------------------------HHHHHHHhCc--hhh-----cCcceEEEEEeeeecCCCHHH
Q psy1315 136 DLPNAIQ--------------------------------IKQIEKLLGL--YEL-----NNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 136 Dl~~~~~--------------------------------~~~~~~~~~~--~~~-----~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
|+..... ......++.. ... .....+.+++|||+++.||++
T Consensus 295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~ 374 (402)
T 1azs_C 295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 374 (402)
T ss_dssp HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence 9843210 1122222110 000 012367889999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy1315 177 GINELYQLILKKRK 190 (202)
Q Consensus 177 l~~~l~~~~~~~~~ 190 (202)
+|+++.+.+.+.+.
T Consensus 375 vF~~v~~~I~~~~l 388 (402)
T 1azs_C 375 VFNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876654
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-22 Score=155.39 Aligned_cols=152 Identities=17% Similarity=0.210 Sum_probs=101.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcC--------CCCCc--------cccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFD--------QYLNT--------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
..+..++|+++|++++|||||+++|.+. .+..+ ..+.|.+.......+ ......+.+|||||+
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY-ETAKRHYSHVDCPGH 85 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEE-ECSSCEEEEEECCCS
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEe-ccCCeEEEEEECCCh
Confidence 3457899999999999999999999873 22111 112344443333322 345678999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcC-HH----HHHHHhCc
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQ-IK----QIEKLLGL 152 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~----~~~~~~~~ 152 (202)
++|...+..++..+|++|+|+|+++... .....++..+... +.| +++|+||+|+..... .. ++...+..
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~----~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQ 160 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987543 3334455444332 678 889999999975221 11 22222211
Q ss_pred hhhcCcceEEEEEeeeecCCC
Q psy1315 153 YELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 153 ~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
..+ .....+++++||++|.|
T Consensus 161 ~~~-~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 161 YEF-PGDEVPVIRGSALLALE 180 (405)
T ss_dssp TTS-CTTTSCEEECCHHHHHH
T ss_pred hcc-cccCCCEEEccHHHhhh
Confidence 111 11247899999999987
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=147.26 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=102.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-----ccccc----------------------ceeeE-----------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-----VPTIG----------------------FNCEK----------- 57 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-----~~~~~----------------------~~~~~----------- 57 (202)
....++|+|+|.+|||||||+++|++..+.+. .+.++ .+...
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999876421 11111 11110
Q ss_pred ------------eecccccccceEEEEEEcCCCC-------------CchhhHHhhhcCCCEEE-EEEeCCCchhHHHHH
Q psy1315 58 ------------VKGQIGKCKGINFLIWDVGGQE-------------KLRPLWKSYTRCTDGII-FVIDSTDVERMEEVK 111 (202)
Q Consensus 58 ------------~~~~~~~~~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~~ 111 (202)
..+.........+.+|||||.. .+......+++.++.+| +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000000113679999999953 34567778888888777 689998644333322
Q ss_pred HHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcC-cceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 112 IELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNN-MHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 112 ~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.++..+. ..+.|+++|+||+|+.+... ... .+....... ....+++++||+++.|++++++++.+.
T Consensus 183 ~~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEVD----PQGQRTIGVITKLDLMDEGTDARD---VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHC----TTCSSEEEEEECGGGSCTTCCCHH---HHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHhC----CCCCeEEEEEEccccCCCCchHHH---HHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 2333332 23789999999999976433 111 111111111 123579999999999999999998773
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=152.31 Aligned_cols=166 Identities=20% Similarity=0.110 Sum_probs=109.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC---C-Cccc--cccceeeEeeccc-------------cc-c----cceEE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY---L-NTVP--TIGFNCEKVKGQI-------------GK-C----KGINF 70 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~---~-~~~~--~~~~~~~~~~~~~-------------~~-~----~~~~~ 70 (202)
..+..++|+++|++++|||||+++|.+... . +..+ |....+....+.. .. + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 346789999999999999999999985432 1 1122 3333322222100 00 1 12689
Q ss_pred EEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH----HHH
Q psy1315 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI----KQI 146 (202)
Q Consensus 71 ~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~----~~~ 146 (202)
.+|||||++.|...+...+..+|++|+|+|+++..........+..+... ...|+++|+||+|+.+.... +++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 99999999988888888888899999999998643122222222222111 13589999999999875321 223
Q ss_pred HHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 147 EKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..++... ...+.+++++||++|.|+++++++|.+.+.
T Consensus 163 ~~~l~~~---~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 163 KEFIEGT---VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHTTS---TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhc---CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3333210 124678999999999999999999987654
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-22 Score=164.76 Aligned_cols=157 Identities=19% Similarity=0.168 Sum_probs=104.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccc------------------------------cccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVP------------------------------TIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~ 65 (202)
.+..++|+++|++++|||||+++|++........ ..|++.......+ ..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~-~~ 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF-ST 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE-EC
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE-ec
Confidence 4678999999999999999999999764321110 1344444433333 44
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch---hH---HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE---RM---EEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
..+.+.+|||||++.+...+..+++.+|++|+|+|+++.. ++ .... ....+... ....|+|||+||+|+.+
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~-e~l~~~~~--lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTK-EHMLLASS--LGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHH-HHHHHHHT--TTCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHH-HHHHHHHH--cCCCeEEEEEecccccc
Confidence 5678999999999999999999999999999999998632 11 1112 22222222 11346999999999986
Q ss_pred CcC--HHH----HHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 140 AIQ--IKQ----IEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 140 ~~~--~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
... ... +...+....+ ....++++++||++|.|+.++
T Consensus 320 ~~~~~~~ei~~~l~~~l~~~g~-~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 320 WSQQRFEEIKSKLLPYLVDIGF-FEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTC-CGGGCEEEECCTTTCTTTSSC
T ss_pred hhHHHHHHHHHHHHHHHHhhcc-cccCccEEeeecccCCCcccc
Confidence 321 112 2222111111 123578999999999999876
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-22 Score=154.95 Aligned_cols=162 Identities=16% Similarity=0.145 Sum_probs=107.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC-------CCC--------ccccccceeeEeecccccccceEEEEEEcCCCCCch
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ-------YLN--------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 82 (202)
+.++|+++|++++|||||+++|.+.. +.. .....|.|.......+ ......+.+|||||+++|.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~-~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY-STAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEE-ECSSCEEEEEECSSHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEe-ccCCeEEEEEECCChHHHH
Confidence 57899999999999999999998631 111 0112344443332222 3456789999999999998
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcC-H----HHHHHHhCchhhc
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQ-I----KQIEKLLGLYELN 156 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~ 156 (202)
..+..++..+|++|+|+|+++....+. ..++..+... +.| +++|+||+|+.+... . .++...+....+
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~----~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~- 154 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI----GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY- 154 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT----TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc----CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 888999999999999999987543332 3333333222 678 689999999975221 1 122222221111
Q ss_pred CcceEEEEEeeeecCCC----------HHHHHHHHHHHHH
Q psy1315 157 NMHLYYIQATCAITGDG----------LHEGINELYQLIL 186 (202)
Q Consensus 157 ~~~~~~~~~~Sa~~~~~----------v~~l~~~l~~~~~ 186 (202)
....++++++||++|.| +.++++.|.+.+.
T Consensus 155 ~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 155 KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 11246899999999764 8888888876553
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-22 Score=158.54 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=101.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC--CCCCcc----------------------------ccccceeeEeeccccccc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD--QYLNTV----------------------------PTIGFNCEKVKGQIGKCK 66 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~--~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 66 (202)
++.++|+++|++++|||||+++|++. .+.... ...+.+.......+ ...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~-~~~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF-ETK 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE-ECS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE-ecC
Confidence 46799999999999999999999864 222100 01223333222222 345
Q ss_pred ceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHH-------HHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK-------IELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-------~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.+.+.+|||||+++|...+..++..+|++|+|+|+++ .+|+... ..+...... .-.|+++|+||+|+.+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCC
Confidence 6789999999999999999999999999999999998 6666432 222222211 1246899999999976
Q ss_pred CcC--------HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 140 AIQ--------IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 140 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
... ..++...+....+ ....++++++||++|.|+.++++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGF-NTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTC-CCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccccHHHHHHHHHHHHHHHHHcCC-CcCCceEEEeecccCcccccccc
Confidence 311 1122222211111 11247899999999999986543
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-22 Score=145.05 Aligned_cols=171 Identities=10% Similarity=0.093 Sum_probs=96.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCC-----------Cch
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-----------KLR 82 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----------~~~ 82 (202)
.....++|+++|++|+|||||++++++..+... .++.+.+........ ......+.+|||||.. .+.
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSS-SWKETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEE-EETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEE-EeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 345789999999999999999999998877432 232233332222211 3345689999999943 344
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHH-HHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHh--CchhhcCcc
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERME-EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL--GLYELNNMH 159 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~ 159 (202)
..+..+++.+|++|+|+|+++..... ....++...... ....|+++|+||+|+.......+..... .+..+...+
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE--RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH--HHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh--hccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 45555667789999999987544321 112222222211 1146999999999987543322111000 011112233
Q ss_pred eEEEEEeeee-----cCCCHHHHHHHHHHHHHHH
Q psy1315 160 LYYIQATCAI-----TGDGLHEGINELYQLILKK 188 (202)
Q Consensus 160 ~~~~~~~Sa~-----~~~~v~~l~~~l~~~~~~~ 188 (202)
+..++.+++. ...++.++++.+.+.+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 4445555544 3468999999988877654
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=146.10 Aligned_cols=122 Identities=25% Similarity=0.276 Sum_probs=97.2
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCC----------CchhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDST----------DVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+.+.+++||++|++.++..|..|+++++++|+|||++ +.+++.....|+..+.......+.|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 4678999999999999999999999999999999998 778999999999998876556689999999999
Q ss_pred CCCCC-----------------cCHHHHHHHhCchh--------h--cCc-----------ceEEEEEeeeecCCCHHHH
Q psy1315 136 DLPNA-----------------IQIKQIEKLLGLYE--------L--NNM-----------HLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 136 Dl~~~-----------------~~~~~~~~~~~~~~--------~--~~~-----------~~~~~~~~Sa~~~~~v~~l 177 (202)
|+... ...++...++...- . +.. ..+.+++|||++..||+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 98531 12223322221100 0 111 4688999999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 178 INELYQLILK 187 (202)
Q Consensus 178 ~~~l~~~~~~ 187 (202)
|+.+.+.+.+
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-22 Score=154.36 Aligned_cols=164 Identities=15% Similarity=0.199 Sum_probs=87.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-C-c--------cccccceeeEeecccccccceEEEEEEcCCC-------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-N-T--------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ------- 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------- 78 (202)
....++|+++|++|+|||||+++|++.... . + .++.+.......+.. .+..+.+.+|||||.
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC-----------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-CCcccceEEEEeccccccCccH
Confidence 345789999999999999999998765432 1 1 133333333333322 233568999999997
Q ss_pred CCchhhHH-------hhhcCCC-------------EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 79 EKLRPLWK-------SYTRCTD-------------GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 79 ~~~~~~~~-------~~~~~~d-------------~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
+.+..++. .+++.++ +++++++.. ..++......+...+. .+.|+|+|+||+|+.
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTL 187 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCC
Confidence 55655655 5555433 444444431 3555555533333332 378999999999998
Q ss_pred CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
...........+ ..+....+++++++||+++.| ++.|.++.+.+.+.
T Consensus 188 ~~~ev~~~k~~i--~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 188 TLKERERLKKRI--LDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp CHHHHHHHHHHH--HHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred CHHHHHHHHHHH--HHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 654333221111 122345678999999999999 88888888877643
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-22 Score=158.81 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=101.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC--CCCCc----------------------------cccccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD--QYLNT----------------------------VPTIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~--~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 65 (202)
.+..++|+++|++++|||||+++|++. .+... ....|.+.......+ ..
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~-~~ 82 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF-ET 82 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE-EC
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE-ec
Confidence 456899999999999999999999864 11110 001233332222222 34
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch---hHH---HHHHHHHHHHccCCCCCCc-EEEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE---RME---EVKIELIKTIKNNDNFNVP-ILILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~ 138 (202)
....+.+|||||++.|...+..++..+|++|+|+|+++.. +|+ ....++...... +.| +++|+||+|+.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~----~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL----GVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT----TCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc----CCCeEEEEEEccccc
Confidence 5678999999999999999999999999999999998642 221 223333322222 555 99999999997
Q ss_pred CC--cCHHH----HHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 139 NA--IQIKQ----IEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 139 ~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
+. ..... +...+....+ ....++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~-~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGY-NPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC-CGGGCCEEECCTTTCBTTTBC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCC-CccCceEEEeecccCcCcccc
Confidence 42 11111 2222211111 112478999999999999754
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-21 Score=140.51 Aligned_cols=131 Identities=17% Similarity=0.200 Sum_probs=87.0
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHH
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWK 86 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 86 (202)
++.+++.....+.++|+++|++|+|||||+++|++..+....+..+.+........ ......+.+|||||+.++.....
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~l~liDTpG~~~~~~~~~ 102 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR-TMGGFTINIIDTPGLVEAGYVNH 102 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEE-EETTEEEEEEECCCSEETTEECH
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEE-EECCeeEEEEECCCCCCcccchH
Confidence 44556666667899999999999999999999999876444443333333333222 34566899999999876654443
Q ss_pred hhhc---------CCCEEEEEEeCCCchhHHHH-HHHHHHHHccCC-CCCCcEEEEeeCCCCCC
Q psy1315 87 SYTR---------CTDGIIFVIDSTDVERMEEV-KIELIKTIKNND-NFNVPILILANKQDLPN 139 (202)
Q Consensus 87 ~~~~---------~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~ 139 (202)
.+++ .+|++++|++++... +... ..++..+..... ....|+++|+||+|+..
T Consensus 103 ~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 103 QALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 3332 689999999997644 3332 233333333211 11349999999999953
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-21 Score=155.87 Aligned_cols=158 Identities=19% Similarity=0.188 Sum_probs=88.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC--CCC----------------------------ccccccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ--YLN----------------------------TVPTIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~--~~~----------------------------~~~~~~~~~~~~~~~~~~~ 65 (202)
.+..++|+++|++++|||||+++|++.. +.. .....|.|.......+ ..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~-~~ 118 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF-ET 118 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE-EC
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE-ec
Confidence 3678999999999999999999997521 110 0001122222211111 23
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch---hHH---HHHHHHHHHHccCCCCCCc-EEEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE---RME---EVKIELIKTIKNNDNFNVP-ILILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~ 138 (202)
....+.+|||||++.|...+..++..+|++|+|+|+++.. +|+ .....+..... .+.| +|||+||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCC
Confidence 4578999999999999999999999999999999998752 222 12222222222 2677 99999999996
Q ss_pred CCcC-H---H----HHHHHhCch-hhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 139 NAIQ-I---K----QIEKLLGLY-ELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 139 ~~~~-~---~----~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
.... . . ++...+... .+....+++++++||++|.|+.+++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 5221 1 1 222222111 1100126889999999999998866
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-21 Score=161.87 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=107.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCC-------CC--------CccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQ-------YL--------NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
..+..++|+++|++++|||||+++|.+.. +. ....+.|.|.......+ ......+.+|||||++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f-~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-DTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEE-ECSSCEEEEEECCCHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEE-cCCCEEEEEEECCChH
Confidence 34578999999999999999999998631 10 11234455544433323 3456789999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCH-----HHHHHHhCch
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQI-----KQIEKLLGLY 153 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~-----~~~~~~~~~~ 153 (202)
+|...+..++..+|++|+|+|+++.... ....++..+... ++| +|||+||+|+.+.... .++...+...
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l----gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~ 445 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV----GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQY 445 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH----TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc----CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhc
Confidence 9999999999999999999999875332 233344333332 678 7899999999863211 1222222211
Q ss_pred hhcCcceEEEEEeeeecC--------CCHHHHHHHHHHHH
Q psy1315 154 ELNNMHLYYIQATCAITG--------DGLHEGINELYQLI 185 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~--------~~v~~l~~~l~~~~ 185 (202)
.+ ....++++++||++| .|+.++++.|.+.+
T Consensus 446 G~-~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 446 DF-PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TS-CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cc-cccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 11 112478999999999 46888888877644
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=152.02 Aligned_cols=119 Identities=18% Similarity=0.092 Sum_probs=81.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC---------------------CccccccceeeEeecccccccceEEEEEEc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL---------------------NTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (202)
.+..+|+++|++|+|||||+++|++.... +..++.|.+.......+ ....+.+.+|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~-~~~~~~i~liDT 89 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF-PYHDCLVNLLDT 89 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE-EETTEEEEEECC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE-EECCeEEEEEEC
Confidence 46799999999999999999999863210 00112233322222222 446788999999
Q ss_pred CCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc
Q psy1315 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141 (202)
Q Consensus 76 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 141 (202)
||+..+...+..+++.+|++|+|+|+++.... .....+.... ..+.|+++|+||+|+....
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~----~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTR----LRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHT----TTTCCEEEEEECTTSCCSC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHH----HcCCCEEEEEcCcCCcccc
Confidence 99999998889999999999999999875322 2222222222 2378999999999997653
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=155.75 Aligned_cols=172 Identities=17% Similarity=0.198 Sum_probs=110.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccc--------------eeeEeec---------------ccccc-
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGF--------------NCEKVKG---------------QIGKC- 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~--------------~~~~~~~---------------~~~~~- 65 (202)
....++|+|+|.+|+|||||+|+|++....+..+.+++ +...... .. ..
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i-~~~ 144 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTI-DPA 144 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCC-CHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcC-CHH
Confidence 45689999999999999999999998876543322222 1110000 00 00
Q ss_pred -------------------------c--ceEEEEEEcCCCCC---chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHH
Q psy1315 66 -------------------------K--GINFLIWDVGGQEK---LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELI 115 (202)
Q Consensus 66 -------------------------~--~~~~~~~D~~G~~~---~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~ 115 (202)
. ...+.+|||||... .......+++.+|++|+|+|++++.+......|..
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~ 224 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLEN 224 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHH
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHH
Confidence 0 03589999999433 45667788999999999999988777666543332
Q ss_pred HHHccCCCCCCcEEEEeeCCCCCCCc-----CHHH-------HHHHhC--chhhcC-----cceEEEEEeeee-------
Q psy1315 116 KTIKNNDNFNVPILILANKQDLPNAI-----QIKQ-------IEKLLG--LYELNN-----MHLYYIQATCAI------- 169 (202)
Q Consensus 116 ~~~~~~~~~~~pvivv~nK~Dl~~~~-----~~~~-------~~~~~~--~~~~~~-----~~~~~~~~~Sa~------- 169 (202)
.+ .. .+.|+++|+||+|+.... .... +...+. +..... ....+++++||+
T Consensus 225 ~l-~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~ 300 (695)
T 2j69_A 225 YI-KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRL 300 (695)
T ss_dssp HT-TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHH
T ss_pred HH-Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhc
Confidence 32 22 267899999999986432 1111 111110 011111 123468999999
Q ss_pred -------cCCCHHHHHHHHHHHHHHHHhhh
Q psy1315 170 -------TGDGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 170 -------~~~~v~~l~~~l~~~~~~~~~~~ 192 (202)
++.|++++++.+.+.+...+...
T Consensus 301 ~~~~~~~~~~Gi~~L~~~L~~~l~~~~~~~ 330 (695)
T 2j69_A 301 KNPQADLDGTGFPKFMDSLNTFLTRERAIA 330 (695)
T ss_dssp HCTTCCCTTSSHHHHHHHHHHHHHHTHHHH
T ss_pred cCchhhhhccCHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999886554433
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-22 Score=164.63 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=83.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC------------------------------ccccccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN------------------------------TVPTIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 65 (202)
.+..++|+++|++++|||||+++|++..... .....|+|.......+ ..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~-~~ 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTF-ES 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEE-Ee
Confidence 5578899999999999999999996431100 0012234444433333 34
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch---hH---HHHHHHHHHHHccCCCCCCc-EEEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE---RM---EEVKIELIKTIKNNDNFNVP-ILILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~ 138 (202)
....+.||||||++.|...+..++..+|++|+|+|+++.. ++ ......+...... +.| +|||+||+|+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l----gip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL----GISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS----SCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc----CCCeEEEEEeccccc
Confidence 4578999999999999988888999999999999998532 11 1112222222222 455 99999999997
Q ss_pred CCc--CHH----HHHHHh-CchhhcCcceEEEEEeeeecCCCHH
Q psy1315 139 NAI--QIK----QIEKLL-GLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 139 ~~~--~~~----~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
+.. ... ++...+ ....+ ...+++++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~-~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGF-KTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCC-CGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCC-CccceEEEEEecccCcccc
Confidence 621 111 222222 11111 2246789999999999998
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=132.48 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=98.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCCCCC----------chh
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK----------LRP 83 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~ 83 (202)
...+..+|+++|++|||||||++++.+..+ ..+.++.|.+.....+.. .. .+.+||+||... +..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~-~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV-AD---GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE-ET---TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe-cC---CEEEEECcCCcccccCHHHHHHHHH
Confidence 345678999999999999999999998774 345667776654333322 11 578999999742 223
Q ss_pred hHHhhh---cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH----HHHHHHhCchhhc
Q psy1315 84 LWKSYT---RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI----KQIEKLLGLYELN 156 (202)
Q Consensus 84 ~~~~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~----~~~~~~~~~~~~~ 156 (202)
....++ ..++++++++|++++.+.... .+...... .+.|+++|+||+|+.+.... ..+...+. .
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~--~-- 168 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVL--A-- 168 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG--G--
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHH--h--
Confidence 333444 468999999999876554321 11111111 26899999999998764221 12222221 0
Q ss_pred CcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 157 NMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 157 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
....+.++++||+++.|++++++.|.+.+.+
T Consensus 169 ~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 169 FNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 1125788999999999999999999887654
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-20 Score=139.17 Aligned_cols=167 Identities=14% Similarity=0.143 Sum_probs=100.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCcc-----cccc---ceee-------------------------------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV-----PTIG---FNCE------------------------------- 56 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~-----~~~~---~~~~------------------------------- 56 (202)
....++|+|+|.+|+|||||+|+|++..+.+.. ..++ .+..
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 346789999999999999999999998762211 1110 0000
Q ss_pred -------------------EeecccccccceEEEEEEcCCCCC-------------chhhHHhhhcCCCEEEEEEeCCCc
Q psy1315 57 -------------------KVKGQIGKCKGINFLIWDVGGQEK-------------LRPLWKSYTRCTDGIIFVIDSTDV 104 (202)
Q Consensus 57 -------------------~~~~~~~~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~ 104 (202)
...+.+.......+.+|||||... +......+++.+|++++|+|..+.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 000000012335799999999653 456677889999999999997432
Q ss_pred hhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc-CcceEEEEEeeeec---CCCHHHHHHH
Q psy1315 105 ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN-NMHLYYIQATCAIT---GDGLHEGINE 180 (202)
Q Consensus 105 ~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~---~~~v~~l~~~ 180 (202)
.........+..... ..+.|+++|+||+|+...... ....+...... .....+++.+|+.+ +.|+.++++.
T Consensus 181 ~~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 181 DLANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp CSTTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred chhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 211111111222222 237899999999999765331 11112111110 12234566667777 8999999999
Q ss_pred HHHHHHH
Q psy1315 181 LYQLILK 187 (202)
Q Consensus 181 l~~~~~~ 187 (202)
+.+.+..
T Consensus 256 ~~~~~~~ 262 (315)
T 1jwy_B 256 EILYFKN 262 (315)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 8887754
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-20 Score=137.68 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=87.7
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh---
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL--- 84 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--- 84 (202)
+..++.......++|+++|.+|+|||||+|+|++..+....++.+.+........ ......+.+|||||..++...
T Consensus 28 ~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~l~iiDTpG~~~~~~~~~~ 106 (270)
T 1h65_A 28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR-SRAGFTLNIIDTPGLIEGGYINDM 106 (270)
T ss_dssp HHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEE-EETTEEEEEEECCCSEETTEECHH
T ss_pred HHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEE-eeCCeEEEEEECCCCCCCccchHH
Confidence 4455555666789999999999999999999998877555555555544443333 456778999999997654322
Q ss_pred ----HHhh--hcCCCEEEEEEeCCCchhHHHH-HHHHHHHHccCC-CCCCcEEEEeeCCCCCCC
Q psy1315 85 ----WKSY--TRCTDGIIFVIDSTDVERMEEV-KIELIKTIKNND-NFNVPILILANKQDLPNA 140 (202)
Q Consensus 85 ----~~~~--~~~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~ 140 (202)
+..+ .+.+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+...
T Consensus 107 ~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 107 ALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp HHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred HHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 1122 2469999999998753 34332 234444333211 112699999999999654
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=147.88 Aligned_cols=122 Identities=22% Similarity=0.137 Sum_probs=85.2
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCC--CC------------Cc---cccccceeeEeecccccccceEEEEEEcC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQ--YL------------NT---VPTIGFNCEKVKGQIGKCKGINFLIWDVG 76 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~--~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 76 (202)
...++..+|+++|++|+|||||+++|+... +. +. ....+.+........ ....+.+++||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~-~~~~~~i~liDTP 85 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC-FWKDHRINIIDTP 85 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEE-EETTEEEEEECCC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEE-EECCeEEEEEECc
Confidence 345678999999999999999999998421 10 00 001122221111111 3346789999999
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 141 (202)
|+..+...+..+++.+|++|+|+|+++..+......|. ..... +.|+++|+||+|+....
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~----~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY----KVPRIAFANKMDKTGAD 145 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT----TCCEEEEEECTTSTTCC
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHHc----CCCEEEEEECCCcccCC
Confidence 99999999999999999999999999877766654433 33333 78999999999997643
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=142.98 Aligned_cols=117 Identities=13% Similarity=0.172 Sum_probs=83.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-c-------------cc---cccceeeEeecccccccceEEEEEEcCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-T-------------VP---TIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
..+..+|+++|+.|+|||||+++|.+..... . .+ ..+.++....... ....+.+++|||||+
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~-~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL-LFRGHRVFLLDAPGY 84 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEE-EETTEEEEEEECCCS
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEE-eeCCEEEEEEeCCCc
Confidence 4567899999999999999999998433210 0 00 1122222222222 345788999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
+.+...+..+++.+|++++|+|+++...... ..++...... +.|+++|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL----GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT----TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc----cCCEEEEecCCchh
Confidence 9999999999999999999999876543332 3344444433 78999999999987
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-18 Score=140.34 Aligned_cols=121 Identities=19% Similarity=0.099 Sum_probs=84.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCC--CC------------Ccc---ccccceee----Eeeccc--ccccceEEE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQ--YL------------NTV---PTIGFNCE----KVKGQI--GKCKGINFL 71 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~--~~------------~~~---~~~~~~~~----~~~~~~--~~~~~~~~~ 71 (202)
..++..+|+++|+.|+|||||+++|+... +. +.. ...+.+.. ...+.. .+...+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34678899999999999999999997531 11 000 01222222 222210 022348899
Q ss_pred EEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 72 ~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
+|||||+.+|...+..+++.+|++|+|+|+++........ .|...... +.|+++|+||+|+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~~----~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANKY----KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHHc----CCCEEEEEeCCCcccc
Confidence 9999999999999999999999999999998765444433 33333332 7899999999998754
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-19 Score=137.52 Aligned_cols=160 Identities=15% Similarity=0.095 Sum_probs=95.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCcc-----cccc----------------------ceee-------------
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV-----PTIG----------------------FNCE------------- 56 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~-----~~~~----------------------~~~~------------- 56 (202)
...++|+|+|.+|||||||+++|++..+.+.. +.++ .+..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 35689999999999999999999998764211 1111 0000
Q ss_pred ----------EeecccccccceEEEEEEcCCCC-------------CchhhHHhhhcCCCEEEE-EEeCCCchhHHHHHH
Q psy1315 57 ----------KVKGQIGKCKGINFLIWDVGGQE-------------KLRPLWKSYTRCTDGIIF-VIDSTDVERMEEVKI 112 (202)
Q Consensus 57 ----------~~~~~~~~~~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~d~~il-v~d~~~~~s~~~~~~ 112 (202)
.....+.......+.+|||||.. .+..+...|+..++.+|+ |.+.+..-.-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 00000001124679999999942 244567778877665555 455543211111111
Q ss_pred HHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcCcc-eEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 113 ELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNNMH-LYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 113 ~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
++..+ ...+.|+++|+||+|+.+... .... +....+.... ..+++++||+++.|++++++.+.+
T Consensus 189 i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~---~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEV----DPQGQRTIGVITKLDLMDEGTDARDV---LENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHH---HTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHh----CcCCCceEEEeccccccCcchhHHHH---HhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22222 234789999999999975432 1111 1111111112 357899999999999999998876
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-19 Score=137.22 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=97.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCcccccc---------------------------------------------
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG--------------------------------------------- 52 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~--------------------------------------------- 52 (202)
....|+|+|++|||||||+++|.+..+.+......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 55699999999999999999999987632211100
Q ss_pred --------ceeeEeecccccccceEEEEEEcCCCCCc-------------hhhHHhhhcCCCEEEEEEeCCCchhHHHHH
Q psy1315 53 --------FNCEKVKGQIGKCKGINFLIWDVGGQEKL-------------RPLWKSYTRCTDGIIFVIDSTDVERMEEVK 111 (202)
Q Consensus 53 --------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~ 111 (202)
+....+...+.......+.+|||||...+ ......|++++|++|+|+|..+.......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~- 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD- 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH-
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH-
Confidence 00000011111122446899999997665 66788899999999999987643332211
Q ss_pred HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHH
Q psy1315 112 IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181 (202)
Q Consensus 112 ~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (202)
+ ..+.......+.|+++|+||+|+....... ...+. ......+.+++++|+.++.++++.+..+
T Consensus 192 -~-~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~--~~~~~--~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 192 -A-IKISREVDPSGDRTFGVLTKIDLMDKGTDA--VEILE--GRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp -H-HHHHHHSCTTCTTEEEEEECGGGCCTTCCS--HHHHT--TSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred -H-HHHHHHhcccCCCEEEEEeCCccCCCcccH--HHHHc--CccccccCCeEEEEECChHHhccCCCHH
Confidence 1 122222233478999999999997543211 11111 1123455778999999888777665443
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-18 Score=141.52 Aligned_cols=119 Identities=19% Similarity=0.200 Sum_probs=84.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC--CCCC---------ccc------cccceeeEeecccccccceEEEEEEcCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD--QYLN---------TVP------TIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~--~~~~---------~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
.++..+|+++|++|+|||||+++|++. .+.. ... ..+.+........ ....+.+++|||||+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~-~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA-AWEGHRVNIIDTPGH 85 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEE-EETTEEEEEECCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEE-EECCeeEEEEECcCC
Confidence 456789999999999999999999842 2110 000 1122222211111 334678999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
..+...+..+++.+|++|+|+|+++..+......| ..+... +.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~~----~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATTY----GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHHT----TCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHHc----CCCEEEEEECCCcccc
Confidence 99999999999999999999999987666654433 334333 7899999999999764
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-19 Score=136.88 Aligned_cols=163 Identities=15% Similarity=0.210 Sum_probs=80.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC-CCCCcc---------ccccceeeEeecccccccceEEEEEEcCCC-------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD-QYLNTV---------PTIGFNCEKVKGQIGKCKGINFLIWDVGGQ------- 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------- 78 (202)
..-.++|+++|++|+|||||++++.+. .++... ++.+.....+.... .+....+++||++|.
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~-~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC----CCEEEEEEEEC---------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecC-CCcccCcchhhhhhhhhhcCcH
Confidence 445789999999999999999998875 333221 22222111222211 234578999999997
Q ss_pred CCchhhHH-------hhhcC-------------CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 79 EKLRPLWK-------SYTRC-------------TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 79 ~~~~~~~~-------~~~~~-------------~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
+.+..... .+++. +++++++.+.+. .+++.....+..... ...|+++|+||.|+.
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTL 168 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCC
Confidence 55554443 44333 234555555432 234333322222221 267999999999997
Q ss_pred CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
............ ..+....+++++++||+++ |++++|+++.+.+.+
T Consensus 169 ~~~e~~~~~~~~--~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 169 TLKERERLKKRI--LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp CHHHHHHHHHHH--HHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred CHHHHHHHHHHH--HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 643322111111 1122334678999999999 999999999988754
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=133.65 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=104.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-cccccceeeEeecccccccceEEEEEEcCCCCCc-------hhhHHhhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL-------RPLWKSYT 89 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~ 89 (202)
-.|+++|++|||||||++++.+.... .+ ..|...+...+.. .....+.+||+||.... .......+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~----~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~ 233 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV----SEEERFTLADIPGIIEGASEGKGLGLEFLRHI 233 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC----SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEe----cCcceEEEEeccccccchhhhhhhhHHHHHHH
Confidence 46899999999999999999887431 11 1111222222222 12357899999996421 11222345
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
+.++.+++++|++ ...+..+..+..++..... ....|.++|+||+|+........+...+ ...+.+++.+||
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l------~~~g~~vi~iSA 306 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL------AREGLAVLPVSA 306 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH------HTTTSCEEECCT
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH------HhcCCeEEEEEC
Confidence 6799999999997 5566666655555443210 1257999999999987652222222221 123467899999
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++|+++++++|.+.+.+.+
T Consensus 307 ~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 307 LTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp TTCTTHHHHHHHHHHHHHTSC
T ss_pred CCccCHHHHHHHHHHHHHhcc
Confidence 999999999999999987654
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-19 Score=139.46 Aligned_cols=85 Identities=21% Similarity=0.191 Sum_probs=47.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-----cccccceeeEeecc---------------cccccceEEEEEEcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NT-----VPTIGFNCEKVKGQ---------------IGKCKGINFLIWDVGG 77 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~-----~~~~~~~~~~~~~~---------------~~~~~~~~~~~~D~~G 77 (202)
++|+++|.||||||||+|+|++.... .+ .++.+........+ ......+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987631 11 12222211110000 0011246799999999
Q ss_pred CCC----chhhHH---hhhcCCCEEEEEEeCCCc
Q psy1315 78 QEK----LRPLWK---SYTRCTDGIIFVIDSTDV 104 (202)
Q Consensus 78 ~~~----~~~~~~---~~~~~~d~~ilv~d~~~~ 104 (202)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 643 222222 457889999999999874
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=134.03 Aligned_cols=168 Identities=14% Similarity=0.169 Sum_probs=101.5
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC------CCC-----Ccccccc----------------ceeeEeec
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD------QYL-----NTVPTIG----------------FNCEKVKG 60 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~------~~~-----~~~~~~~----------------~~~~~~~~ 60 (202)
++..+.+...+...|+++|.+|+|||||+++|... +.. ...+..+ ........
T Consensus 68 ~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~ 147 (355)
T 3p32_A 68 LLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPS 147 (355)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECC
T ss_pred HHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEEC
Confidence 44555555677889999999999999999998532 100 0000000 00000000
Q ss_pred cc-----------------ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCC
Q psy1315 61 QI-----------------GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN 123 (202)
Q Consensus 61 ~~-----------------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~ 123 (202)
.. .....+.+.+|||||... .....+..+|++|+|+|....+.+..+. . ..
T Consensus 148 ~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~ 215 (355)
T 3p32_A 148 PTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------K--GV 215 (355)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TS
T ss_pred CCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------H--hH
Confidence 00 022457899999999533 2334458899999999987544332211 1 11
Q ss_pred CCCcEEEEeeCCCCCCCcCHHHHHHHhCch--hhc---CcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 124 FNVPILILANKQDLPNAIQIKQIEKLLGLY--ELN---NMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 124 ~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
...|+++|+||+|+............+... .+. ..++.+++++||++|.|+++++++|.+.+..
T Consensus 216 ~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 216 LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 246999999999986543222221111100 010 1235689999999999999999999988754
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=133.34 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=82.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--Cccccccceee-Eeeccc-------------------------------
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCE-KVKGQI------------------------------- 62 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~-~~~~~~------------------------------- 62 (202)
...++|+|+|.+|+|||||+|+|++..+. ...+...++.. .+....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 46789999999999999999999998763 22222111111 000000
Q ss_pred ------ccccceEEEEEEcCCCCC-----------chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCC
Q psy1315 63 ------GKCKGINFLIWDVGGQEK-----------LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125 (202)
Q Consensus 63 ------~~~~~~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~ 125 (202)
...-...+.+|||||... +......++..+|++|+|+|+++.........++..+.. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC
Confidence 000003589999999654 456677788999999999999875444555555544432 26
Q ss_pred CcEEEEeeCCCCCCCcCHHH
Q psy1315 126 VPILILANKQDLPNAIQIKQ 145 (202)
Q Consensus 126 ~pvivv~nK~Dl~~~~~~~~ 145 (202)
.|+++|+||+|+........
T Consensus 219 ~pvilVlNK~Dl~~~~el~~ 238 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMR 238 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHH
Confidence 89999999999986544333
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-18 Score=129.17 Aligned_cols=135 Identities=21% Similarity=0.181 Sum_probs=100.7
Q ss_pred HHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch-hHHHH
Q psy1315 34 TALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE-RMEEV 110 (202)
Q Consensus 34 sL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~ 110 (202)
+|+.++..+.|. .+.||+|..+. .... .+. .+.+||+ ++++..+++.+++++|++|+|||++++. ++..+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~---~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l 104 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPD---ETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII 104 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECC---CSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEc---CCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH
Confidence 577788877775 46788885443 3331 222 7899999 8999999999999999999999999987 68888
Q ss_pred HHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 111 KIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 111 ~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
..|+..+... +.|+++|+||+|+.+.....+....... + ... +++++|||++|.|++++|+.+..
T Consensus 105 ~~~l~~~~~~----~~piilv~NK~DL~~~~~v~~~~~~~~~--~-~~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 105 DKFLVLAEKN----ELETVMVINKMDLYDEDDLRKVRELEEI--Y-SGL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHT----TCEEEEEECCGGGCCHHHHHHHHHHHHH--H-TTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHHC----CCCEEEEEeHHHcCCchhHHHHHHHHHH--H-hhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 8787765442 7999999999999765332223333221 1 111 68999999999999999987653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.9e-18 Score=131.07 Aligned_cols=159 Identities=14% Similarity=0.075 Sum_probs=75.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCc---------cccccceeeEeecccc-cccceEEEEEEcCCCCCch----
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNT---------VPTIGFNCEKVKGQIG-KCKGINFLIWDVGGQEKLR---- 82 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~---- 82 (202)
.-.++|+++|++|+|||||++.|++..++.. .++.+. ..+.+... .+....+++||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~--~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQV--EQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEE--EEEECC------CEEEEEEECC----------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceee--eeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 3467899999999999999999998765311 112111 12222111 2234578999999965431
Q ss_pred ---hh------------------HHhhhcCCCEEEEEEeCCCc-hhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 83 ---PL------------------WKSYTRCTDGIIFVIDSTDV-ERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 83 ---~~------------------~~~~~~~~d~~ilv~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.+ ...++.++++.+++|..... .++.... .++..+ . .+.|+|+|+||+|+..
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLT 181 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCcc
Confidence 11 11223445544444444322 3444443 344433 2 2789999999999976
Q ss_pred CcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
..........+. ......+++++++|++++.++.++|..+.+.
T Consensus 182 ~~ev~~~k~~i~--~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 182 PEECQQFKKQIM--KEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHH--HHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHH--HHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 533332222221 1123356789999999999999988877654
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=129.44 Aligned_cols=120 Identities=15% Similarity=0.098 Sum_probs=83.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC------------------C---CccccccceeeEeecccccccceEEEEE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY------------------L---NTVPTIGFNCEKVKGQIGKCKGINFLIW 73 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (202)
..++.-+|+|+|+.++|||||..+|+.... . +.....|.+.......+ ..+.+.++++
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~-~~~~~~iNlI 105 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF-PYRDRVVNLL 105 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE-EETTEEEEEE
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE-EECCEEEEEE
Confidence 344677999999999999999999963211 0 11111122222222222 4577899999
Q ss_pred EcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 74 D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
||||+.+|.......++-+|++|+|+|+...-.-... ..|...... ++|.++++||+|....
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~~----~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRMR----ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHHT----TCCEEEEEECTTSCCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHHh----CCceEEEEecccchhc
Confidence 9999999999999999999999999999864333333 344444444 8999999999998764
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-17 Score=136.17 Aligned_cols=127 Identities=15% Similarity=0.165 Sum_probs=90.4
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC------------CCCc-------cccccceeeEeeccc-----
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ------------YLNT-------VPTIGFNCEKVKGQI----- 62 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~------------~~~~-------~~~~~~~~~~~~~~~----- 62 (202)
+.++.+.....+..+|+++|++++|||||+++|++.. +.+. ..|+........+..
T Consensus 7 ~~~~~~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~ 86 (842)
T 1n0u_A 7 DQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDV 86 (842)
T ss_dssp HHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHH
T ss_pred HHHHHHhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccc
Confidence 3344444455678899999999999999999998641 1100 112222222222210
Q ss_pred ------ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 63 ------GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 63 ------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
.++..+.+++|||||+.+|...+..+++.+|++|+|+|+.+..++.....|. ..... +.|+++|+||+|
T Consensus 87 ~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~~----~~p~ilviNK~D 161 (842)
T 1n0u_A 87 KEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALGE----RIKPVVVINKVD 161 (842)
T ss_dssp HHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHHT----TCEEEEEEECHH
T ss_pred ccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc----CCCeEEEEECCC
Confidence 1234788999999999999999999999999999999999887777655443 33332 789999999999
Q ss_pred CC
Q psy1315 137 LP 138 (202)
Q Consensus 137 l~ 138 (202)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 86
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-17 Score=125.09 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=89.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC------CC--Ccccc-----------------------------c------cc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ------YL--NTVPT-----------------------------I------GF 53 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~------~~--~~~~~-----------------------------~------~~ 53 (202)
.....|+++|.||||||||+|++.+.. .. ...|+ . |+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 457899999999999999999998521 00 00000 0 00
Q ss_pred eeeEeecc-cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEe
Q psy1315 54 NCEKVKGQ-IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132 (202)
Q Consensus 54 ~~~~~~~~-~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~ 132 (202)
+....... .-....+.+.++||+|.... .......+|.+++|+|++++.....+.. .+ ...|.++|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVl 219 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAV 219 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEE
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEE
Confidence 00000000 00124567899999995321 2345678999999999976433221111 11 146889999
Q ss_pred eCCCCCCCcC----HHHHHHHhCchh-hcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 133 NKQDLPNAIQ----IKQIEKLLGLYE-LNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 133 nK~Dl~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
||+|+.+... ...+...+.... ....+..+++++||+++.|+++++++|.+.+.
T Consensus 220 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 220 TKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999864321 111222221100 00112457899999999999999999988764
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=120.29 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=95.7
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC------CCC-----Ccccc-----cc-------------ceeeEee
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD------QYL-----NTVPT-----IG-------------FNCEKVK 59 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~------~~~-----~~~~~-----~~-------------~~~~~~~ 59 (202)
+..+.....+...|+++|.+|+|||||++.+.+. +.. ...+. .+ .......
T Consensus 46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~ 125 (341)
T 2p67_A 46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVP 125 (341)
T ss_dssp HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEEC
T ss_pred HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCc
Confidence 3444555677889999999999999999999632 110 00000 00 0000000
Q ss_pred --------------cc-cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCC
Q psy1315 60 --------------GQ-IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF 124 (202)
Q Consensus 60 --------------~~-~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~ 124 (202)
.. ......+.+.++||||...... .....+|++++|+|++....+..+.. .. .
T Consensus 126 ~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~ 193 (341)
T 2p67_A 126 SSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------M 193 (341)
T ss_dssp C-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------H
T ss_pred cccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------h
Confidence 00 0012356899999999654333 34688999999999975432211110 00 1
Q ss_pred CCcEEEEeeCCCCCCCcCHH----HHHHHhCchh-hcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 125 NVPILILANKQDLPNAIQIK----QIEKLLGLYE-LNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 125 ~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+.|.++|+||+|+....... .+...+.... ....+..+++++||++|.|++++++.|.+.+.
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 46889999999987642222 1222111000 00112457899999999999999999988765
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=115.79 Aligned_cols=84 Identities=20% Similarity=0.113 Sum_probs=55.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-Cc--cccccceeeEeecccc------------cccceEEEEEEcCCCCCch--
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NT--VPTIGFNCEKVKGQIG------------KCKGINFLIWDVGGQEKLR-- 82 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~G~~~~~-- 82 (202)
++|+++|.||||||||+|++.+..+. .. ..|...+...+.++-. ......+++||+||..+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987632 11 1233333323332100 0012579999999987643
Q ss_pred -----hhHHhhhcCCCEEEEEEeCCC
Q psy1315 83 -----PLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 83 -----~~~~~~~~~~d~~ilv~d~~~ 103 (202)
.....+++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 234456899999999999975
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-17 Score=116.82 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=93.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCC-----ccccc------------cceeeEeeccc-c------------cccc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLN-----TVPTI------------GFNCEKVKGQI-G------------KCKG 67 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~-----~~~~~------------~~~~~~~~~~~-~------------~~~~ 67 (202)
+..+|+++|.+|||||||+++|.+..... ..... +.+........ . ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 56799999999999999999998642110 00000 11111111100 0 1234
Q ss_pred eEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHH
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQ 145 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~ 145 (202)
..+.+|||+|+..... .+....+.+++|+|+.+..... ..+ ... . +.|+++|+||+|+.+. .....
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~--~~~-~~~--~----~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV--EKH-PEI--F----RVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH--HHC-HHH--H----HTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh--hhh-hhh--h----hcCCEEEEecccCCcchhhHHHH
Confidence 6789999999521111 1113578999999987643211 111 111 1 5789999999998643 23444
Q ss_pred HHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 146 IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
....+.. . ....+++++||++|.|+++++++|.+.+....
T Consensus 177 ~~~~~~~--~--~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 177 MKADAKL--I--NPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHH--H--CTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHH--h--CCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 4443321 1 23468999999999999999999998875543
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=129.80 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=98.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCcccccc--------------------------------------------
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG-------------------------------------------- 52 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~-------------------------------------------- 52 (202)
-..++|+|+|.+++|||||+|+|++..+.+......
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 467899999999999999999999987632211100
Q ss_pred ------ceeeEeecccccccceEEEEEEcCCCCC-------------chhhHHhhh-cCCCEEEEEEeCCCchhHHHHHH
Q psy1315 53 ------FNCEKVKGQIGKCKGINFLIWDVGGQEK-------------LRPLWKSYT-RCTDGIIFVIDSTDVERMEEVKI 112 (202)
Q Consensus 53 ------~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------------~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~ 112 (202)
++...+...+.......+.++||||... +......|+ ..+|++++|+|+++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0000011111011223578999999433 223445555 46899999999986432222222
Q ss_pred HHHHHHccCCCCCCcEEEEeeCCCCCCCcCH-HHHHHHhCchhhc-CcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 113 ELIKTIKNNDNFNVPILILANKQDLPNAIQI-KQIEKLLGLYELN-NMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 113 ~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
.+..+. ..+.|+++|+||+|+...... ..+.. ...+. .....+++++||++|.|++++++.+.+
T Consensus 209 ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~---~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLE---NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHT---TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHH---HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 222332 237899999999999764321 11111 11111 123467899999999999999998876
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.9e-17 Score=118.49 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=70.1
Q ss_pred ceEEEEEEcCCCCCchhhHH------hhhcCCCEEEEEEeCCCchhHHHHHH---HHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPLWK------SYTRCTDGIIFVIDSTDVERMEEVKI---ELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~---~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
.+.+.+|||||......... ..+.. +++|+++|.....+...... ....... ..+.|+++|+||+|+
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDL 183 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGG
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEecccc
Confidence 35799999999765433211 24455 88888988754333222221 1111111 126899999999998
Q ss_pred CCCcCHHHHHHHhC-chh----------------------hcC-cceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 138 PNAIQIKQIEKLLG-LYE----------------------LNN-MHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 138 ~~~~~~~~~~~~~~-~~~----------------------~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
........+...+. ... ... ....+++++||++++|+++++++|.+.+..
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 184 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 76533222222210 000 001 123478999999999999999999887653
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=107.14 Aligned_cols=110 Identities=23% Similarity=0.265 Sum_probs=83.6
Q ss_pred CCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHH---HHHHccCC-CCCCcEEEEeeCC-CCCCCcCHHHHHHHh
Q psy1315 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIEL---IKTIKNND-NFNVPILILANKQ-DLPNAIQIKQIEKLL 150 (202)
Q Consensus 76 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~pvivv~nK~-Dl~~~~~~~~~~~~~ 150 (202)
+|+..++.+|..|++++|++|||+|.+|.+.++ ....+ ..++.... ..+.|++|++||. |++......++...+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 478899999999999999999999998876554 44444 33343322 3589999999995 888888999999999
Q ss_pred CchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 151 GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
.+... . ..+.+..|||++|+|+.+-++||.+.+..+
T Consensus 189 ~L~~l-~-R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 189 HLNLL-N-HPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp TGGGG-C-SCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CCcCC-C-CCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 88776 3 688999999999999999999998776543
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-16 Score=126.90 Aligned_cols=161 Identities=19% Similarity=0.189 Sum_probs=108.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC--C-----C----cc------ccccceeeEeecccccccceEEEEEEcCCCCCch
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY--L-----N----TV------PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~--~-----~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 82 (202)
-+|+++|+.++|||||..+|+.... . . +. ...|.|.......+ ..+.+.++++||||+.+|.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~-~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF-QWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCC-BCSSCBCCCEECCCSSSTH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEE-EECCEEEEEEECCCcHHHH
Confidence 4799999999999999999963211 0 0 00 11134444333333 5567889999999999999
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH---HHHHHhCch------
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK---QIEKLLGLY------ 153 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~---~~~~~~~~~------ 153 (202)
......++-+|++|+|+|+.+.-.-+ ....|...... ++|.++++||+|........ +++..+...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~----~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKM----GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHH----TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHc----CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 99999999999999999998542222 23344444444 78999999999986643322 222211100
Q ss_pred -------------------------------------------------hhcCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 154 -------------------------------------------------ELNNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 154 -------------------------------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.+....-.|++..||.++.|++.+++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence 0001123678889999999999999998875
Q ss_pred HH
Q psy1315 185 IL 186 (202)
Q Consensus 185 ~~ 186 (202)
+.
T Consensus 237 ~p 238 (638)
T 3j25_A 237 FY 238 (638)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-18 Score=123.46 Aligned_cols=155 Identities=19% Similarity=0.135 Sum_probs=87.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceee--------------Eeecc------c---------c--c
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCE--------------KVKGQ------I---------G--K 64 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~--------------~~~~~------~---------~--~ 64 (202)
.+.++|+++|.+|||||||+++|....+.. ..++++.... ...+. . . .
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 357899999999999999999998764322 1122211110 01100 0 0 0
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQ 142 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~ 142 (202)
.....+.++|++|.-... ..+-...+..+.++|..+...... ..... . ..|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~--~----~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGI--M----KTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHH--H----TTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhH--h----hcCCEEEEeccccCchhHHH
Confidence 011246667777632111 111123456667777532111110 00011 1 4688999999998653 23
Q ss_pred HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 143 IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
.......+.. + ..+.+++++||++|.|++++|+++.+.+..
T Consensus 184 ~~~~~~~~~~--~--~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 184 IKKMENDAKR--I--NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHH--H--CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--h--CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3344333321 1 235689999999999999999999887754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=111.44 Aligned_cols=84 Identities=23% Similarity=0.201 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-cccccceeeEeeccc------------cc----ccceEEEEEEcCCCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NT-VPTIGFNCEKVKGQI------------GK----CKGINFLIWDVGGQEK 80 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~-~~~~~~~~~~~~~~~------------~~----~~~~~~~~~D~~G~~~ 80 (202)
++|+++|.||||||||++++.+.... .+ ..|...+.....++- .. .....+++||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 58999999999999999999875421 11 112222222222210 00 1245799999999654
Q ss_pred c-------hhhHHhhhcCCCEEEEEEeCCC
Q psy1315 81 L-------RPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 81 ~-------~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
. ......+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 2334556899999999999975
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=111.65 Aligned_cols=116 Identities=19% Similarity=0.157 Sum_probs=79.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSYTRC 91 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~ 91 (202)
..+|+++|.|+||||||+|+|++.. ....+.+++|...+...+ ......++++|+||... ........++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~-~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVI-RYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEE-EETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEE-EeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 4689999999999999999999875 334444556665554444 55678899999999422 22334556788
Q ss_pred CCEEEEEEeCCCchhHH-HHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 92 TDGIIFVIDSTDVERME-EVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
+|++++|+|++++..-. .+...+..... .....|.+++.||.|..
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~--~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGI--RLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTE--EETCCCCCEEEEECSSS
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhH--hhccCChhhhhhHhhhh
Confidence 99999999999763322 22222222111 23367888999999974
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=115.22 Aligned_cols=119 Identities=20% Similarity=0.160 Sum_probs=80.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC--------------CCC---ccccccceee--Eeecccc----cccceEEEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ--------------YLN---TVPTIGFNCE--KVKGQIG----KCKGINFLIW 73 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~--------------~~~---~~~~~~~~~~--~~~~~~~----~~~~~~~~~~ 73 (202)
++.-+|+|+|+.++|||||..+|+... +.+ .....|.|.. .+++... ..+.+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 466789999999999999999996321 100 0111122222 2222111 2346899999
Q ss_pred EcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 74 D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
||||+.+|.......++-+|++|+|+|+.+.-.... ...|...... ++|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~~----~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANKY----GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHH----TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHHc----CCCeEEEEccccccCc
Confidence 999999999999999999999999999985433322 3344444444 7999999999998653
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=108.96 Aligned_cols=167 Identities=13% Similarity=0.186 Sum_probs=94.5
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc------CCCC--Ccccc--------------ccc-----eeeEeec
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKF------DQYL--NTVPT--------------IGF-----NCEKVKG 60 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~------~~~~--~~~~~--------------~~~-----~~~~~~~ 60 (202)
++........+...++++|++|||||||++.+.+ .... ...+. .+. .......
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 123 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPS 123 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECC
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccC
Confidence 4455555667788999999999999999999973 2211 00000 000 0000000
Q ss_pred c-----------------cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCC
Q psy1315 61 Q-----------------IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN 123 (202)
Q Consensus 61 ~-----------------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~ 123 (202)
. ........+.++||||...-. ......+|.+++++|....+....+....
T Consensus 124 ~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i--------- 191 (337)
T 2qm8_A 124 PSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI--------- 191 (337)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---------
T ss_pred cccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---------
Confidence 0 001245679999999964322 23457899999999986433211111100
Q ss_pred CCCcEEEEeeCCCCCCCcC-----HHHHHHHhCchhh-cCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 124 FNVPILILANKQDLPNAIQ-----IKQIEKLLGLYEL-NNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 124 ~~~pvivv~nK~Dl~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
...|.++++||+|+..... ...+...+..... ...+..+++.+||+++.|++++++.|.+...
T Consensus 192 ~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 192 FELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred hccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1246678889999754321 1112221111000 0012356888999999999999999988764
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=105.51 Aligned_cols=111 Identities=23% Similarity=0.267 Sum_probs=87.2
Q ss_pred cCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHH---HHHccC-CCCCCcEEEEeeC-CCCCCCcCHHHHHHH
Q psy1315 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELI---KTIKNN-DNFNVPILILANK-QDLPNAIQIKQIEKL 149 (202)
Q Consensus 75 ~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~---~~~~~~-~~~~~pvivv~nK-~Dl~~~~~~~~~~~~ 149 (202)
.+|+...+.+|..|++++|++|+|+|.+|.+.++ ....+. .++... ...+.|++|.+|| .|++......++...
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4678999999999999999999999999887654 333222 333221 1348999999996 699988899999999
Q ss_pred hCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 150 LGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 150 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+.+... . ..+.+..|||.+|+|+.+-++||.+.+..+
T Consensus 273 L~L~~l-~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLL-N-HPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGG-C-SCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccC-C-CcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 988776 2 688999999999999999999999887544
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-13 Score=101.25 Aligned_cols=111 Identities=22% Similarity=0.129 Sum_probs=80.7
Q ss_pred ccceEEEEEE-cCC-----CCCchhhHHhhhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 65 CKGINFLIWD-VGG-----QEKLRPLWKSYTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 65 ~~~~~~~~~D-~~G-----~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
++.+.+..+| +.| ++++..+...+++++|++++|+|++++. ++..+.+|+..+... ++|+++|+||+|+
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~----~~~~ilV~NK~DL 122 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF----KVEPVIVFNKIDL 122 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT----TCEEEEEECCGGG
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC----CCCEEEEEEcccC
Confidence 4555666665 323 6778888888999999999999999886 888888887765543 7999999999999
Q ss_pred CCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHH
Q psy1315 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELY 182 (202)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 182 (202)
.+............ +....+++++++||+++.|++++++.+.
T Consensus 123 ~~~~~v~~~~~~~~---~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 123 LNEEEKKELERWIS---IYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CCHHHHHHHHHHHH---HHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCccccHHHHHHHH---HHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 76532111111111 1122356899999999999999998764
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.5e-13 Score=101.68 Aligned_cols=93 Identities=22% Similarity=0.149 Sum_probs=53.9
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-Cc--cccccceeeEeecccc------------cccceEEEEEEcCC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NT--VPTIGFNCEKVKGQIG------------KCKGINFLIWDVGG 77 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~G 77 (202)
.......++|+++|.+|+|||||+|++.+.... .. ..|...+...+.++-. ......+++||+||
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 335567899999999999999999999987542 11 1222222222222100 00123599999999
Q ss_pred CCCchh-------hHHhhhcCCCEEEEEEeCCCch
Q psy1315 78 QEKLRP-------LWKSYTRCTDGIIFVIDSTDVE 105 (202)
Q Consensus 78 ~~~~~~-------~~~~~~~~~d~~ilv~d~~~~~ 105 (202)
.....+ .+..+++.+|++++|+|+.+.+
T Consensus 96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 765433 5678889999999999997543
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-12 Score=98.59 Aligned_cols=119 Identities=10% Similarity=0.094 Sum_probs=75.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC-----CCCCccccccceeeEeecccccccceEEEEEEcCCCCCch--------hhH
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD-----QYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--------PLW 85 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~ 85 (202)
..+|+++|.+|+|||||+|+|++. ......+..++|.....+... . .+.++||||..... ...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-S---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-T---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-C---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 468999999999999999999976 334445566677666665442 1 27899999943221 122
Q ss_pred Hhhh--cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHH
Q psy1315 86 KSYT--RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQI 146 (202)
Q Consensus 86 ~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 146 (202)
..++ ...++++++++....-.+..+.+ +......+.|+++++||.|..+.......
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~ 295 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKA 295 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGH
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHH
Confidence 2222 56899999998842211111111 11112337899999999998765443333
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-11 Score=94.09 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=73.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC------CCCccccccceeeEeecccccccceEEEEEEcCCCCCch--------hh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ------YLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--------PL 84 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~ 84 (202)
..+|+++|.+|+|||||+|++++.. .....+..++|.....+... . .+.++||||..... ..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~---~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-E---ESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-S---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-C---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence 4689999999999999999998753 22345666677666666442 1 27899999943211 11
Q ss_pred HHhh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHH
Q psy1315 85 WKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKL 149 (202)
Q Consensus 85 ~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~ 149 (202)
...+ ....+.++++++......+..+.. +......+.|+++++||.|..+........+.
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~ 297 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLEKADEL 297 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHHHHHHH
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHHHHHHH
Confidence 2222 255788899998742211111110 11112337899999999999876555544443
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-10 Score=87.68 Aligned_cols=89 Identities=21% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccc----cccceeeEeecccc---------cc-c--ceEEEEEEcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVP----TIGFNCEKVKGQIG---------KC-K--GINFLIWDVGGQ 78 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~----~~~~~~~~~~~~~~---------~~-~--~~~~~~~D~~G~ 78 (202)
......+|+++|.+|+|||||+|+|.+.......+ |...+...+.+.-. .. . ...+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 45567899999999999999999999866422222 22222222222100 00 0 135899999993
Q ss_pred -------CCchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 79 -------EKLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 79 -------~~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
+.+...+...++.+|++++|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2344456677889999999999864
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-10 Score=87.98 Aligned_cols=122 Identities=13% Similarity=0.205 Sum_probs=64.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC--c-cccccceeeEeeccccc-ccceEEEEEEcCCCCCc-------------
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN--T-VPTIGFNCEKVKGQIGK-CKGINFLIWDVGGQEKL------------- 81 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~------------- 81 (202)
.++++|+|++|+|||||++.+.+..+.. . ....+.+...+.+.... .-...+.++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4569999999999999999999875421 1 11123233333332211 11236889999984321
Q ss_pred -hhhHHhhh-------------cC--CCEEE-EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH
Q psy1315 82 -RPLWKSYT-------------RC--TDGII-FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK 144 (202)
Q Consensus 82 -~~~~~~~~-------------~~--~d~~i-lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~ 144 (202)
...+..++ .. .|+++ ++.|... .+......+...+. .+.|+|+|.||+|........
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~--~l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH--SLKSLDLVTMKKLD----SKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC--CCCHHHHHHHHHHh----hCCCEEEEEcchhccchHHHH
Confidence 11111111 11 23444 4445542 23222222333332 378999999999987654444
Q ss_pred HH
Q psy1315 145 QI 146 (202)
Q Consensus 145 ~~ 146 (202)
.+
T Consensus 196 ~l 197 (427)
T 2qag_B 196 KF 197 (427)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.05 E-value=4.3e-10 Score=89.68 Aligned_cols=160 Identities=17% Similarity=0.145 Sum_probs=86.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhh------cCCCC-----Ccccc-----------ccceeeEeecc----------c--
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLK------FDQYL-----NTVPT-----------IGFNCEKVKGQ----------I-- 62 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~------~~~~~-----~~~~~-----------~~~~~~~~~~~----------~-- 62 (202)
.+...|+++|.+||||||++++|. +.+.. .+.+. .++........ +
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346689999999999999999997 33321 01110 01111111000 0
Q ss_pred ccccceEEEEEEcCCCCCch-hhHH---hh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcE-EEEeeCC
Q psy1315 63 GKCKGINFLIWDVGGQEKLR-PLWK---SY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPI-LILANKQ 135 (202)
Q Consensus 63 ~~~~~~~~~~~D~~G~~~~~-~~~~---~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pv-ivv~nK~ 135 (202)
.....+.+.++||||..... .++. .+ ...+|.+++|+|+......... ...+ .. ..|+ ++|+||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~-~~----~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAF-KD----KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHH-HH----HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHH-Hh----hcCceEEEEeCC
Confidence 01145689999999965321 1111 11 2268999999999764332221 1111 11 2464 8889999
Q ss_pred CCCCCcCH-HHHHHHhCchh--------hcC-cceEEEEEeeeecCCC-HHHHHHHHHHH
Q psy1315 136 DLPNAIQI-KQIEKLLGLYE--------LNN-MHLYYIQATCAITGDG-LHEGINELYQL 184 (202)
Q Consensus 136 Dl~~~~~~-~~~~~~~~~~~--------~~~-~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 184 (202)
|....... -.+........ +.. ....+.+++|+..|.| +.++++++.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 98754321 11222211100 000 0011234578999999 99999998765
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-09 Score=83.21 Aligned_cols=169 Identities=14% Similarity=0.051 Sum_probs=89.4
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccc--ccc--ceeeEeecccccccceEEEEEEcCCCCC----chh
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVP--TIG--FNCEKVKGQIGKCKGINFLIWDVGGQEK----LRP 83 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~ 83 (202)
+.........++++|++|+|||||+|.+.+-..+.... ..+ .+...+.+. ......+.++|++|... ...
T Consensus 62 L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q--~~~~~~ltv~D~~g~~~~~~~~~~ 139 (413)
T 1tq4_A 62 LKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK--HPNIPNVVFWDLPGIGSTNFPPDT 139 (413)
T ss_dssp HHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE--CSSCTTEEEEECCCGGGSSCCHHH
T ss_pred hhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc--ccccCCeeehHhhcccchHHHHHH
Confidence 33334456689999999999999999999853321110 001 111111111 11122578999998421 111
Q ss_pred hHH-hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC---------CCcCHHHHHHHhCch
Q psy1315 84 LWK-SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP---------NAIQIKQIEKLLGLY 153 (202)
Q Consensus 84 ~~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~---------~~~~~~~~~~~~~~~ 153 (202)
... ..+...+..++ ++...... .-......+... +.|+++|.||.|+. +......+...+...
T Consensus 140 ~L~~~~L~~~~~~~~-lS~G~~~k--qrv~la~aL~~~----~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 140 YLEKMKFYEYDFFII-ISATRFKK--NDIDIAKAISMM----KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp HHHHTTGGGCSEEEE-EESSCCCH--HHHHHHHHHHHT----TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHcCCCccCCeEE-eCCCCccH--HHHHHHHHHHhc----CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 111 12333455554 66652111 111111222222 68999999999863 122333333333211
Q ss_pred h---h-cC-cceEEEEEeee--ecCCCHHHHHHHHHHHHHHHH
Q psy1315 154 E---L-NN-MHLYYIQATCA--ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 154 ~---~-~~-~~~~~~~~~Sa--~~~~~v~~l~~~l~~~~~~~~ 189 (202)
. + .. .....++.+|+ .++.|++++.+.+.+.+.+.+
T Consensus 213 ~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 213 CVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 1 0 01 12235788899 566779999999988875554
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.3e-10 Score=81.36 Aligned_cols=120 Identities=16% Similarity=0.228 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCcc-------cccc-ceeeEeecccc-cccceEEEEEEcCCCCC-------ch
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTV-------PTIG-FNCEKVKGQIG-KCKGINFLIWDVGGQEK-------LR 82 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~-------~~~~-~~~~~~~~~~~-~~~~~~~~~~D~~G~~~-------~~ 82 (202)
.++++++|++|+|||||++.+.+...+... +... .....+.+... ..-...+.++|++|... +.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999875432111 0000 01111222110 11223688999998321 00
Q ss_pred hh-------HHh--------------hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc
Q psy1315 83 PL-------WKS--------------YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141 (202)
Q Consensus 83 ~~-------~~~--------------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 141 (202)
.. ... .+..++++++++|... ..+......+...+.. ..++|+|.+|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 00 001 1223688899998542 2222222222222232 38999999999987654
Q ss_pred CH
Q psy1315 142 QI 143 (202)
Q Consensus 142 ~~ 143 (202)
..
T Consensus 157 e~ 158 (270)
T 3sop_A 157 EK 158 (270)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.4e-10 Score=81.88 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=36.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
++++++|.+|+|||||+|++.+.....+.++.|+|.....+.. ...+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL----ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC----TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe----CCCEEEEECCCcc
Confidence 7999999999999999999998877666777776654433322 2357899999954
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-09 Score=80.56 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=70.1
Q ss_pred EEEcCCCC-CchhhHHhhhcCCCEEEEEEeCCCchhHH--HHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHH
Q psy1315 72 IWDVGGQE-KLRPLWKSYTRCTDGIIFVIDSTDVERME--EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEK 148 (202)
Q Consensus 72 ~~D~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 148 (202)
+-..||+. .........+..+|+++.|+|+.++.+.. .+..++ .++|.++|+||+|+.+....+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~~~~~~~~~~ 73 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKADAAVTQQWKE 73 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSCHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCCHHHHHHHHH
Confidence 34568865 45567777889999999999999887654 222221 3789999999999987433323333
Q ss_pred HhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 149 LLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
++ ...+++++++||.++.|++++++.+.+.+...
T Consensus 74 ~~------~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 74 HF------ENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HH------HTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HH------HhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 22 12345789999999999999999988877644
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-09 Score=83.79 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=68.2
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhh
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYEL 155 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~ 155 (202)
..+.|...+..+.+.++++++|+|+.++. ..|...+... ..+.|+++|+||+|+.... ....+...+.. .
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~--~ 125 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRY--S 125 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHH--H
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHH--H
Confidence 35778899999999999999999998743 2232233222 2278999999999996543 23333332211 1
Q ss_pred cCcceE---EEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 156 NNMHLY---YIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 156 ~~~~~~---~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
....++ +++++||++|.|++++++.+.+..
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 112233 789999999999999999987643
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-09 Score=80.36 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=38.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
....++++++|.||+|||||+|++.+.....+.+..++|.....+.. ...+.++||||..
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV----GKELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE----TTTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe----CCCEEEEECcCcC
Confidence 35678999999999999999999998876666677676655543322 2258899999953
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.6e-09 Score=81.08 Aligned_cols=100 Identities=12% Similarity=0.141 Sum_probs=67.9
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhh
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYEL 155 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~ 155 (202)
.++.|.+.+..+.+.++++++|+|+.++.+ .|...+... ..+.|+++|+||+|+.... ....+...+.. .
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~NK~DLl~~~~~~~~~~~~l~~--~ 127 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVGNKADLLPRSVKYPKLLRWMRR--M 127 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEEECGGGSCTTCCHHHHHHHHHH--H
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEEEChhcCCCccCHHHHHHHHHH--H
Confidence 377899999999999999999999998763 122222221 2278999999999997543 23333333211 0
Q ss_pred cCcce---EEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 156 NNMHL---YYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 156 ~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
....+ ..++.+||++|.|++++++.+.+..
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 11222 3789999999999999999987654
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=74.36 Aligned_cols=116 Identities=22% Similarity=0.198 Sum_probs=63.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc------CCC-----CCccc-----------cccceeeEeeccc------------c
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF------DQY-----LNTVP-----------TIGFNCEKVKGQI------------G 63 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~------~~~-----~~~~~-----------~~~~~~~~~~~~~------------~ 63 (202)
++..|+++|.+|+||||++..|.. .+. +...+ ..++......... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988853 111 01111 1122221111100 0
Q ss_pred cccceEEEEEEcCCCCCchhh----HH--hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 64 KCKGINFLIWDVGGQEKLRPL----WK--SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~----~~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
....+.+.++||+|....... .. .....+|.+++|+|+.......... ...... -.+..||.||+|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCC
Confidence 113367899999994332211 11 1133589999999997543322222 222222 2356788999997
Q ss_pred CCC
Q psy1315 138 PNA 140 (202)
Q Consensus 138 ~~~ 140 (202)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 643
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-07 Score=76.55 Aligned_cols=72 Identities=18% Similarity=0.118 Sum_probs=46.2
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-Cccccc-cceeeEeec--ccccccceEEEEEEcCCCC
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTI-GFNCEKVKG--QIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~D~~G~~ 79 (202)
.+..+.....+...|+|+|.||+|||||+|+|++.... ....+. +.+.....+ +........+.++||||..
T Consensus 27 al~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 27 ALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp HHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred HHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 34445555667899999999999999999999987642 232222 222222221 1112345678999999943
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-07 Score=75.50 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
...|+|+|+.|||||||++.+.+-.
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 3459999999999999999998864
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.7e-08 Score=71.47 Aligned_cols=93 Identities=14% Similarity=0.049 Sum_probs=60.7
Q ss_pred cCCCC-CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCch
Q psy1315 75 VGGQE-KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLY 153 (202)
Q Consensus 75 ~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~ 153 (202)
.||+. .........+.++|+++.|+|+.++.+..... ... . ++|.++|+||+|+.+......+..++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~------l~l-l--~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG------VDF-S--RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT------SCC-T--TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH------HHh-c--CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 36654 33456777889999999999999876554311 011 1 789999999999987533333333221
Q ss_pred hhcCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 154 ELNNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
..+.++ .+||+++.|++++++.+.+
T Consensus 73 ----~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 ----KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 123456 8999999999999887654
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-06 Score=68.49 Aligned_cols=113 Identities=26% Similarity=0.217 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC------CC-----CCcccc-----------ccceeeEe--------ec---ccccc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD------QY-----LNTVPT-----------IGFNCEKV--------KG---QIGKC 65 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~------~~-----~~~~~~-----------~~~~~~~~--------~~---~~~~~ 65 (202)
...|+++|.+|+||||+++.|... +. +.+.+. .++..... .. .+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 467999999999999999998652 11 000000 01100000 00 00012
Q ss_pred cceEEEEEEcCCCCCchhhHH----hh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCC-c-EEEEeeCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWK----SY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV-P-ILILANKQDL 137 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~----~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-vivv~nK~Dl 137 (202)
..+.+.++||||......... .. +..+|.+++|+|+..... ....... ... .. | ..+|.||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~-~~~----~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKA-FKE----AVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHH-HHT----TSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHH-Hhh----cccCCeEEEEeCCCC
Confidence 456789999999654322111 11 225899999999865432 1212212 121 34 5 8899999997
Q ss_pred CC
Q psy1315 138 PN 139 (202)
Q Consensus 138 ~~ 139 (202)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-07 Score=75.31 Aligned_cols=98 Identities=22% Similarity=0.246 Sum_probs=56.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--chhhH--------H
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--LRPLW--------K 86 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~--------~ 86 (202)
.....|+++|.+||||||+.++|.........++..+......... .+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~-~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM-VKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhh-ccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999875432111222222211111111 11223346788888632 22232 5
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHH
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIK 116 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~ 116 (202)
.++....+.++|+|.++. ....-..|+..
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~ 144 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNF 144 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHH
Confidence 566667888999999876 44443434333
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-07 Score=69.48 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=59.6
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHH-HHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC----HHHHHHHhCchhh
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERME-EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ----IKQIEKLLGLYEL 155 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----~~~~~~~~~~~~~ 155 (202)
-..+....+.++|.+++|+|+.+|..-. .+.+++...... ++|.++|+||+|+.+... ...+...+
T Consensus 76 ~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~----~~~~vivlnK~DL~~~~~~~~~~~~~~~~y----- 146 (307)
T 1t9h_A 76 TNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN----DIQPIICITKMDLIEDQDTEDTIQAYAEDY----- 146 (307)
T ss_dssp SCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT----TCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----
T ss_pred hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC----CCCEEEEEECCccCchhhhHHHHHHHHHHH-----
Confidence 3345556789999999999998765433 333333333222 789999999999987633 22222221
Q ss_pred cCcceEEEEEeeeecCCCHHHHHHH
Q psy1315 156 NNMHLYYIQATCAITGDGLHEGINE 180 (202)
Q Consensus 156 ~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (202)
...+++++.+||.++.|++++++.
T Consensus 147 -~~~g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 147 -RNIGYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp -HHHTCCEEECCHHHHTTCTTTGGG
T ss_pred -HhCCCeEEEEecCCCCCHHHHHhh
Confidence 123468899999999988877654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.4e-05 Score=62.76 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=62.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc------CCC-----CCcc-----------ccccceeeEeecc------------cc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF------DQY-----LNTV-----------PTIGFNCEKVKGQ------------IG 63 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~------~~~-----~~~~-----------~~~~~~~~~~~~~------------~~ 63 (202)
+..-|+++|++||||||++..|.. .+. +.+. ...+......... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 456789999999999999998852 111 0000 1112211111000 00
Q ss_pred cccceEEEEEEcCCCCC--ch----hhHHh--hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 64 KCKGINFLIWDVGGQEK--LR----PLWKS--YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~--~~----~~~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
....+.+.++||||... .. ..... ....++.+++|+|+............+.. . -.+..||.||+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~---~----~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQ---A----SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHH---H----CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhc---c----cCCcEEEEecc
Confidence 12356788999999533 11 11111 12246999999999754333232222222 1 24577899999
Q ss_pred CCCC
Q psy1315 136 DLPN 139 (202)
Q Consensus 136 Dl~~ 139 (202)
|...
T Consensus 249 D~~a 252 (433)
T 3kl4_A 249 DGTA 252 (433)
T ss_dssp GGCS
T ss_pred cccc
Confidence 9763
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.12 E-value=5.4e-06 Score=62.00 Aligned_cols=94 Identities=17% Similarity=0.067 Sum_probs=51.9
Q ss_pred cceEEEEEEcCCCCC--chh-hHH-----hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCC
Q psy1315 66 KGINFLIWDVGGQEK--LRP-LWK-----SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQD 136 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~--~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~D 136 (202)
..+.+.++||||... ... +.. .....+|.+++|+|+..... .......... ..| ..+|.||+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 456789999999765 322 211 12346899999999864322 2222222211 245 678899999
Q ss_pred CCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
..... ....... ...+.|+.+++ .|++++++
T Consensus 251 ~~~~~--g~~~~~~------~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 251 GTAKG--GGALSAV------AATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GCTTH--HHHHHHH------HTTTCCEEEEE--CSSSTTCE
T ss_pred CCcch--HHHHHHH------HHHCcCEEEEe--CCCChhhc
Confidence 65321 1111111 22345666655 57777554
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.05 E-value=8.3e-06 Score=62.37 Aligned_cols=86 Identities=21% Similarity=0.162 Sum_probs=55.3
Q ss_pred hhcCCCEEEEEEeCCCchh-HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 88 YTRCTDGIIFVIDSTDVER-MEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
...++|.+++|.+.. |.. ...+.+++...... ++|+++|+||+|+.+.......+..+. .+ ...+++++.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~----~~~~iivlNK~DL~~~~~~~~~~~~~~--~y-~~~G~~v~~~ 198 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL----QVEPLIVLNKIDLLDDEGMDFVNEQMD--IY-RNIGYRVLMV 198 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH----TCEEEEEEECGGGCCHHHHHHHHHHHH--HH-HTTTCCEEEC
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc----CCCEEEEEECccCCCchhHHHHHHHHH--HH-HhCCCcEEEE
Confidence 468899999887764 443 33344444333333 688899999999987533111222221 11 2345678999
Q ss_pred eeecCCCHHHHHHHH
Q psy1315 167 CAITGDGLHEGINEL 181 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l 181 (202)
||.++.|++++...+
T Consensus 199 Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 199 SSHTQDGLKPLEEAL 213 (358)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred ecCCCcCHHHHHHhc
Confidence 999999999887643
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.2e-05 Score=63.37 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=23.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+.--|+|+|++++|||+|+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 446677899999999999999999863
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.81 E-value=1.4e-05 Score=55.53 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.76 E-value=6.5e-05 Score=59.06 Aligned_cols=115 Identities=20% Similarity=0.224 Sum_probs=61.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh-------cCCCC-----Ccccc-----------ccceeeEee------------ccc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK-------FDQYL-----NTVPT-----------IGFNCEKVK------------GQI 62 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~-------~~~~~-----~~~~~-----------~~~~~~~~~------------~~~ 62 (202)
+...|+++|.+|+||||++..|. +.+.. .+.+. .++...... +..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 35678899999999999998885 22210 11110 011111100 000
Q ss_pred ccccceEEEEEEcCCCCCchh-hHH-----hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCC
Q psy1315 63 GKCKGINFLIWDVGGQEKLRP-LWK-----SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQ 135 (202)
Q Consensus 63 ~~~~~~~~~~~D~~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~ 135 (202)
.....+.+.++||||...... ... ..+..++.+++|+|+........ ....... ..+ .-+|.||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~-----~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE-----ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH-----HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc-----cCCCeEEEEecC
Confidence 011456789999999654322 211 12346899999999875433222 1212111 223 34688999
Q ss_pred CCCCC
Q psy1315 136 DLPNA 140 (202)
Q Consensus 136 Dl~~~ 140 (202)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 97543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.68 E-value=3.5e-05 Score=54.46 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=27.4
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++.+.......+...|+|+|++|||||||++.+.+.
T Consensus 10 ~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344444444566789999999999999999988754
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.66 E-value=7.5e-05 Score=56.57 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+.--++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.65 E-value=2.7e-05 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.62 E-value=1.6e-05 Score=57.17 Aligned_cols=42 Identities=26% Similarity=0.157 Sum_probs=18.9
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhh-cC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLK-FD 42 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~-~~ 42 (202)
||...+.......-...+.--++++|++|||||||++.+. +.
T Consensus 9 ~~~~~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 9 MGTLEAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -------------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cchhhhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 5655555544444444455679999999999999999998 54
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=4.5e-05 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
--++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999764
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=5.2e-05 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
-.++|+|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.48 E-value=8.2e-05 Score=52.10 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.--|+|+|++|+|||||++.|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3446899999999999999999854
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.42 E-value=7.8e-05 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.-.|+++|++|||||||++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456999999999999999999875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.41 E-value=7.6e-05 Score=52.34 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.--++++|++|||||||++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.39 E-value=3.3e-05 Score=57.88 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.-.++++|++|||||||+|.+.+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHhccccc
Confidence 45899999999999999999987643
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00031 Score=49.17 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=46.0
Q ss_pred ceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccC-CCCCCcEEEEeeCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNN-DNFNVPILILANKQDLPN 139 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~ 139 (202)
.+.+.++|+|+.. .......+..+|.+|++...+... ......+..+.... ...+.++.+|.|+.|...
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 4678999999865 345556677799999999887533 45444444443221 123567799999998543
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00014 Score=52.75 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..++.+.|++.|++||||||+.+.|..
T Consensus 25 ~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 25 LSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999999863
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00017 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.--|+++|++|||||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4468999999999999999998653
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=8.8e-05 Score=50.74 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~ 40 (202)
--++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 357899999999999999754
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.37 E-value=9.4e-05 Score=52.20 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.--++++|++|||||||++.+.+-
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34446899999999999999999764
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=52.38 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=21.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+.-.++|+|++|||||||++.+.+-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344556899999999999999999764
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=52.48 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.+.--++++|+.|||||||++.+.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 344578999999999999999998643
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00045 Score=54.11 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~ 40 (202)
.-.|+++|.+|+||||++..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4468889999999999998875
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00033 Score=49.12 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=27.2
Q ss_pred hHHHHHHhhc-CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 5 SAAFFENLQA-SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..++.+.+.. ......-|+++|++|||||||++.+.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443 245567899999999999999998864
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00016 Score=52.17 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468999999999999999988754
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00017 Score=48.76 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=23.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.+.-.++++|+.|+|||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455579999999999999999998764
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00019 Score=48.73 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCCHHHHHHHh
Q psy1315 20 VHIVMLGLDSAGKTTALYRL 39 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l 39 (202)
+-|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00034 Score=52.07 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...+...|+|+|++|||||||++.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999988754
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00017 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..|+++|++|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998754
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00019 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+...|+++|+.|||||||++.+.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988653
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00022 Score=50.00 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
...|+++|++|||||||++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999997654
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=49.74 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-++++|++|||||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0002 Score=50.38 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-|+|+|++|||||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999753
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0003 Score=53.83 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
-.++++|++|+|||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3789999999999999999998654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00019 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|||||||++.+.+-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999988754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0002 Score=48.59 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|++.|++||||||+++.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00035 Score=52.27 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=26.7
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+....-...+.=.++|+|++|+|||||++.+.+
T Consensus 116 L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 116 LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred hccceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 444455566777899999999999999999875
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00023 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00022 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.-|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00023 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.156 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00059 Score=51.04 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL 45 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~ 45 (202)
-.++++|++|||||||+|.+.+...+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 36899999999999999999876543
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00026 Score=51.25 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~ 40 (202)
...|+++|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00025 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00024 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
..=.++++|+.|||||||++.+.+-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458999999999999999998754
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00022 Score=49.64 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00025 Score=52.39 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|||||||++.+.+-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458999999999999999998754
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00028 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.-.|+++|++|||||||++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00029 Score=50.89 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|||||||++.+.+-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999997753
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00028 Score=49.70 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+...|++.|.+||||||+++.|..
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0019 Score=45.53 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=46.1
Q ss_pred cceEEEEEEcCCC-CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 66 KGINFLIWDVGGQ-EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 66 ~~~~~~~~D~~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
..+.+.++|+|+. ... .....+..+|.+|++...+. .++......+..+.... +.++.+|.|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 3567899999986 432 34456678999999998753 45555555554443321 466889999998654
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00031 Score=49.60 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=51.67 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|||||||++.+.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998754
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00035 Score=49.12 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=25.0
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-+.......|+++|++|||||||++.|.+.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344556678999999999999999999764
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00032 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.171 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|+++|++||||||+++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00027 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|||||||++.+.+-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468999999999999999998754
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00032 Score=49.85 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+.|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00032 Score=50.97 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|||||||++.+.+-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999988754
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00028 Score=51.70 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.=.++++|++|||||||++.+.+-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34457999999999999999998763
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00029 Score=51.65 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|||||||++.+.+-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 33468999999999999999988754
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00034 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00033 Score=50.78 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998753
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00031 Score=49.26 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..|+++|++||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999876
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00042 Score=48.47 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....+.|++.|.+||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999998864
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00085 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
-.++++|++|+|||||+|.+. ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 468999999999999999998 543
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00034 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|+|||||++.+.+-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00025 Score=48.70 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.-.++++|++|+|||||++.+.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00031 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|+|||||++.+.+-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00044 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|+++|++||||||+++.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00035 Score=48.81 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998865
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00032 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|+|||||++.+.+-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00037 Score=50.47 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=22.4
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....-...+...|+++|+.|||||||++.+.+
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33444455677899999999999999998865
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00038 Score=48.19 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00033 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358999999999999999988754
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00033 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|+++|.+||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00025 Score=50.13 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
=.++++|+.|+|||||++.+.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00034 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
=.++++|+.|+|||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999885
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00036 Score=48.79 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=20.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+.-.|+++|++||||||+.+.|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3445899999999999999998864
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00037 Score=48.11 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..|++.|.+||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999854
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00034 Score=47.83 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-|++.|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998753
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00037 Score=51.00 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|||||||++.+.+-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33468999999999999999998753
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00026 Score=56.87 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
..-.++|+|++|||||||++.+.+--
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34459999999999999999998643
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00037 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++|+|.|.+||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00042 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.074 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00051 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+...|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00036 Score=51.43 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00037 Score=51.22 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.=.++++|+.|+|||||++.+.+-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999885
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00045 Score=51.99 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=23.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+..-|+|+|++|||||||++.+.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 566788999999999999999998764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0004 Score=51.38 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|+|||||++.+.+-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999998754
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00036 Score=48.27 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|+|.|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00039 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00037 Score=49.65 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+.=-++++|++|+|||||++.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999976
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00041 Score=50.97 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33468999999999999999987753
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00041 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00051 Score=47.99 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+...|++.|.+||||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998764
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00047 Score=47.74 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00047 Score=47.45 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999853
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00049 Score=48.36 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|++.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.002 Score=50.64 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=20.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
..+..=|+|+|..++|||+|+|.++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3455667799999999999999664
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00051 Score=47.65 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00052 Score=48.01 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+...|+++|++|||||||++.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999988653
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00067 Score=48.22 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-|+++|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999988854
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00076 Score=49.75 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998764
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00048 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+...|+|.|.+||||||+++.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0002 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|++.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00054 Score=46.32 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00053 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|+|||||++.+.+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998765
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00077 Score=44.63 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.+.........|++.|++|+|||++++.+...
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3333333455678999999999999999988654
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00062 Score=46.70 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=21.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3456799999999999999998863
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00063 Score=51.29 Aligned_cols=26 Identities=27% Similarity=0.166 Sum_probs=22.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....+-|+++|++|||||||++.+.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999998864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00024 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.++|+|++|||||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00061 Score=47.99 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+...|++.|.+||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0011 Score=45.45 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.+++.|++|+|||+|++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999988654
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00051 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....|+|+|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998853
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00039 Score=46.38 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999998764
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00078 Score=46.47 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+...|+++|.+||||||+++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00051 Score=46.93 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|+++|.+||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999998854
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00062 Score=49.50 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+.+.|+|.|.+||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998854
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00063 Score=48.51 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.|+|.|.+||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998853
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00047 Score=53.02 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=24.0
Q ss_pred CCCc--ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 15 SGSS--SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 15 ~~~~--~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.... .-+++|+|++|+|||||++.+.+..
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445 5689999999999999999988653
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0007 Score=47.24 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+...|++.|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999998764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0004 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.=.++++|+.|||||||++.+.+-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3447899999999999999988764
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0008 Score=47.06 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+...|+|.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998863
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00065 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|+|||||++.+.+-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468999999999999999987753
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00077 Score=50.07 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.....-|++.|++||||||+++.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999964
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00061 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=-++++|+.|||||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357999999999999999998754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0006 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.++|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999998754
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00079 Score=50.53 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=22.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+...|+++|++|||||||++.+.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55678999999999999999998763
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00077 Score=46.63 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00083 Score=48.19 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.....|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00091 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.206 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
+...|+++|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999987
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00072 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=-++++|+.|||||||++.+.+-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999998754
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00074 Score=51.72 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-++++|+.|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3458899999999999999998753
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00074 Score=51.76 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-++++|+.|||||||++.+.+-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3458999999999999999988754
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00094 Score=47.30 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.+.|+|.|.+||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00086 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+.|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998853
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00078 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-++++|+.|||||||++.+.+-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3357999999999999999998754
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00078 Score=51.08 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.-.++++|++|||||||++.+.+--
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4479999999999999999998753
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00079 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-++++|+.|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457999999999999999998754
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00076 Score=48.96 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998764
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0011 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.-.|+++|+.|||||||++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999863
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00067 Score=49.38 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=22.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.......|+++|.+||||||+.+.|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999998854
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0012 Score=50.98 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=26.6
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++..........-.++++|++|+|||||++.+.+
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3444444556667899999999999999999875
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00083 Score=48.91 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-|+++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999854
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00086 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57899999999999999998754
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0009 Score=45.42 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0009 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..++++|.+|||||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999998753
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00082 Score=51.60 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-.++++|+.|||||||++.+.+-
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34458999999999999999999875
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00093 Score=45.94 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998854
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00089 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-++++|+.|||||||++.+.+-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3467999999999999999998754
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0013 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0061 Score=43.80 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=43.2
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
...+.+.++|+|+.... .....+..+|.+|++...+. .++..+.......... . -..+.+|.|+.+
T Consensus 129 ~~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~~-~--~~~~~~v~N~~~ 194 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNL-NSIKTGLNIEKLAGDL-G--IKKVRYVINKVR 194 (254)
T ss_dssp HTCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSH-HHHHHHHHHHHHHHHH-T--CSCEEEEEEEEC
T ss_pred cCCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCH-HHHHHHHHHHHHHHHc-C--CccEEEEEeCCC
Confidence 34678899999875432 44566688999999998853 4555554443322222 1 245788899998
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00086 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.--++++|+.|||||||++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 445789999999999999999864
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00093 Score=51.52 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.=.++|+|++|||||||++.+.+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3446999999999999999999763
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00071 Score=46.39 Aligned_cols=23 Identities=30% Similarity=0.134 Sum_probs=16.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0011 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0011 Score=47.61 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.+.|++.|++||||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998863
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0013 Score=46.11 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=20.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+.-.+++.|+||+|||+++.++..
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 33345699999999999998877754
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00085 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998764
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0004 Score=48.95 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0015 Score=44.55 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.+++.|++|+|||+|++.+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999988653
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0012 Score=44.66 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=47.32 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.--++++|++|+|||||++.+.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999999874
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0013 Score=44.98 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998865
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0012 Score=47.22 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+..-|+|.|+.|||||||++.+.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 356678999999999999999998765
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.001 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
=-++|+|++|||||||++.+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999998764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00072 Score=51.59 Aligned_cols=24 Identities=33% Similarity=0.218 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=-++++|+.|||||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 368999999999999999998754
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.=.++++|+.|||||||++.+.+-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 346899999999999999998764
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0014 Score=45.63 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..++.|++.|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35788999999999999999988643
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.013 Score=45.99 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=22.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...+--|++.|+||+|||+|++++.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 445668999999999999999998754
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=48.72 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999998764
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0017 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
...+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999886
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00082 Score=44.40 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.....|++.|++|+|||++++.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 34567999999999999999877654
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0016 Score=45.88 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=21.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+..-|+++|.+||||||+++.+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999998864
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=48.96 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=21.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+.=-++++|++|+|||||+..+.+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 334446899999999999999988653
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0014 Score=44.94 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-.+|+|+.|+|||||+..+...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00071 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-++++|+.|||||||++.+.+-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999998754
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=46.08 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=21.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....--++++|++|+|||||+..+..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33445689999999999999999986
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0016 Score=46.40 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.--++++|+.|||||||++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 445789999999999999999864
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0017 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.-.|+++|.+||||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 55799999999999999998854
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=46.73 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...--++++|++|+|||||+..+...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34557899999999999999999873
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0036 Score=43.86 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+++.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988653
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=47.36 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-.++++|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999998753
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0023 Score=45.81 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.....-|+|.|.+||||||+++.+...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998653
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0022 Score=47.70 Aligned_cols=27 Identities=11% Similarity=-0.033 Sum_probs=21.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.+.-+++.|+||+|||+|++.+...
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344567888899999999999988754
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=45.02 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988653
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...--|+|+|+.|||||||++.+.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3455799999999999999999854
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=51.66 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
....-.++|+|+.|||||||++.+.+-
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 445668999999999999999998764
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0018 Score=49.35 Aligned_cols=31 Identities=16% Similarity=0.051 Sum_probs=25.1
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
-...+.=+++++|+.|+|||||++.+.+...
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444566899999999999999999987643
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0023 Score=45.79 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+++.+|+|+|||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 578999999999999999998854
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=47.82 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.-|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0018 Score=48.75 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
--++++|..|||||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999999865
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0031 Score=45.25 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
......|+++|.+||||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0029 Score=42.14 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHhhc
Q psy1315 22 IVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~ 41 (202)
.+++|+.|+|||||+.++..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999753
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0054 Score=46.88 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=23.2
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.......-.+++.|++|+|||+|++.+...
T Consensus 64 ~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp HTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 333333468999999999999999998643
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0033 Score=46.86 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=21.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
......+++.|++|+|||+|++.+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999986653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0028 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999998754
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0025 Score=46.97 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.--++++|++|+|||||+..+.+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999998875
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0026 Score=45.16 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-+++.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0033 Score=46.32 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-.+++.|++|+|||+|++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44567999999999999999998754
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0027 Score=51.89 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34478999999999999999987653
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0025 Score=50.66 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
=.++++|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5689999999999999999865
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0029 Score=46.93 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.+++.|++|+|||+|++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999999998754
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0048 Score=46.61 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
......+++.|++|+|||+|++.+...
T Consensus 52 ~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 344557999999999999999998643
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0036 Score=45.38 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.....+++.|++|+|||+|++.+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999865
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0047 Score=46.45 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.+++.|++|+|||+|++.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4457999999999999999988753
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0041 Score=45.37 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=22.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.....+++.|++|+|||+|++.+....
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 345789999999999999999987543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0038 Score=50.50 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.=-++++|+.|+|||||++.+.+...
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34589999999999999999987543
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0029 Score=49.80 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=26.9
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+..+ -...+.=+++++|+.|+|||||++.+.+..
T Consensus 148 ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 148 INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444 445566689999999999999999998764
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0035 Score=43.79 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
...|+++|++|+|||+|...|...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999998653
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0067 Score=44.42 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
......+++.|++|+|||+|++.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 455678999999999999999988753
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0032 Score=51.49 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=22.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
++.=.++++|+.|+|||||++.+.+-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999987653
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0034 Score=43.83 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0031 Score=47.06 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-.+++.|++|+|||+|++.+.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 44557999999999999999998754
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0051 Score=46.91 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=25.2
Q ss_pred HHHHHHhhcC--CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 6 AAFFENLQAS--GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 6 ~~~~~~~~~~--~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+++..+... .....+|+++|++|+||||+.+.+..
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3444444332 23456899999999999999987643
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0044 Score=50.82 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.=.++++|+.|+|||||++.+.+-..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCC
Confidence 34689999999999999999987543
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0031 Score=51.74 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
++.=.++++|+.|+|||||++.+.+-.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 344579999999999999999887653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0038 Score=44.77 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.--++++|++|+|||||+.++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999877753
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0037 Score=48.91 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-|+++|.+||||||+.++|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999999998753
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0036 Score=46.69 Aligned_cols=23 Identities=48% Similarity=0.596 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
+.-.|+++|++|+||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999875
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0036 Score=44.75 Aligned_cols=27 Identities=37% Similarity=0.338 Sum_probs=19.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...+..-|+|.|.+||||||+++.+..
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677899999999999999998864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0036 Score=47.84 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...--+.++|++|+|||||+..+...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34457899999999999999999764
|
| >3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.052 Score=38.67 Aligned_cols=28 Identities=14% Similarity=-0.066 Sum_probs=21.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+++.+=|++-|+++.|||+|++++++..
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhccc
Confidence 3344445555999999999999999874
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0088 Score=47.33 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.7
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...........-.+++.|+||+|||+|++.+..
T Consensus 53 ~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 53 VELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 334444444556899999999999999998854
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0055 Score=43.70 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=21.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+..-|++.|.+||||||+++.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0027 Score=51.87 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34478999999999999999887643
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.013 Score=45.39 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=22.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...+--|++.|+||+|||.|++++.+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 344567999999999999999999754
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0032 Score=51.05 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+...|+++|.+|||||||++.|.+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 345678999999999999999998754
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0061 Score=50.05 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
..=.++++|+.|+|||||++.+.+...
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 445789999999999999999987543
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0069 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988654
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0038 Score=47.36 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0057 Score=46.80 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-.+++.|++|+|||+|++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34557999999999999999998753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0061 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.199 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.++++|+.|+|||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987543
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0056 Score=46.52 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
++++.|++|+|||||++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998876
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0045 Score=46.01 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-.+++.|++|+|||+|++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988643
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0046 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=18.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
..+ ++++|+.|+|||||++.+.
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 344 5699999999999999986
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0028 Score=47.09 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=17.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.+-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998854
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0036 Score=51.22 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.=.++++|+.|+|||||++.+.+-
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447899999999999999988764
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.009 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0071 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|+|||||++.+.+-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998754
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0047 Score=46.53 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..|+++|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0046 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.--|+++|++|+||||++..+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 44688999999999999998853
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0057 Score=42.04 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999855
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0048 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998864
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0057 Score=46.85 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-.+++.|++|+|||+|++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999988753
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0047 Score=43.60 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+.|++.|.+||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0067 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.++++|+.|+|||||++.+.+-..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0051 Score=47.22 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.++|.|++|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.005 Score=46.46 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.|++.|+||+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999998754
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0036 Score=45.66 Aligned_cols=26 Identities=31% Similarity=0.188 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++...|+|.|.+||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999988654
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0048 Score=48.35 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...+--|++.|+||+|||+|++++.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344556999999999999999998754
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.016 Score=45.36 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=22.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...+--|++.|+||+|||+|++++.+.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHH
Confidence 344567999999999999999999754
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0049 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....+++.|++|+|||+|++.+..
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998864
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0052 Score=48.22 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=22.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...+-.|++.|+||+|||+|++++.+.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 345568999999999999999998754
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0067 Score=45.65 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.+++.|+||+|||+|++.+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999998653
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.014 Score=42.65 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=24.6
Q ss_pred HHhhcCC-CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 10 ENLQASG-SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 10 ~~~~~~~-~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+.... .+.-.+++.|+||+|||.|+..+..
T Consensus 94 ~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 94 LGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3343333 4456799999999999999998875
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0066 Score=43.63 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999988643
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0067 Score=45.93 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998754
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.015 Score=45.96 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=23.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
....--|++.|+||+|||+|++++.+.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 455678999999999999999998754
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.006 Score=50.05 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
++++|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999987643
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0063 Score=45.61 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-|+|+|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5889999999999999999644
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.01 Score=44.39 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=25.6
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.+.........|++.|++|+|||++++.+...
T Consensus 15 ~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 15 LNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp HHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 3333333455678999999999999999988653
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.013 Score=44.83 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3448999999999999999988753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 202 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 8e-28 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 5e-26 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 1e-25 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-25 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 6e-24 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-23 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 3e-23 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 3e-23 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 4e-23 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 8e-23 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 1e-22 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 2e-22 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 8e-22 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 1e-21 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 5e-21 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 2e-20 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 9e-20 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 3e-19 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-18 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 1e-18 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 6e-18 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 9e-18 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 1e-17 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 1e-17 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 2e-17 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 4e-17 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 4e-17 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 8e-17 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 1e-15 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 8e-15 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 1e-14 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 1e-14 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 1e-14 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 2e-14 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 1e-13 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 4e-13 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 8e-13 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 2e-12 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 2e-12 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 9e-12 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 2e-11 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 2e-11 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 4e-11 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 4e-11 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 9e-11 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 1e-10 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 1e-10 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 2e-10 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 9e-10 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 2e-09 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 3e-09 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 2e-08 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 5e-08 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 2e-07 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 4e-07 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 5e-07 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 1e-06 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 1e-05 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 5e-05 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 3e-04 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 8e-04 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 0.003 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 101 bits (251), Expect = 8e-28
Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 6/170 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
G+ + I+MLGLD+AGKTT LY+LK Q + T+PT+GFN E K + F +WDV
Sbjct: 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE-----TVTYKNVKFNVWDV 63
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GGQ+K+RPLW+ Y T G+IFV+D D +R++E + EL + I + + + ILI ANKQ
Sbjct: 64 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 123
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
DLP+A++ +I++ LGL + + + Y +CA +GDGL+EG+ L
Sbjct: 124 DLPDAMKPHEIQEKLGLTRIRDRNWYVQ-PSCATSGDGLYEGLTWLTSNY 172
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 96.6 bits (239), Expect = 5e-26
Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 6/178 (3%)
Query: 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKG 67
L+++ V I++LGLD+AGKTT L +L + + PT GFN + V+ +G
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-----SQG 59
Query: 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
+WD+GGQ K+RP W+SY TD +I+VIDS D +R EE EL + ++ VP
Sbjct: 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP 119
Query: 128 ILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
+LI ANKQDL A +I + L L+ + + + A+TG+G+ +G+N + + +
Sbjct: 120 VLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQ-SCSALTGEGVQDGMNWVCKNV 176
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 95.8 bits (237), Expect = 1e-25
Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 6/170 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I++LGLD AGKTT LYRL+ + + T PTIGFN E + K + +WD+GGQ
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL-----SYKNLKLNVWDLGGQT 72
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+RP W+ Y T +IFV+DSTD +RM EL ++ + + +L+ ANKQD P
Sbjct: 73 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
A+ ++ K L L EL + + A+ AI G+G+ EG++ L +I +++
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIV-ASSAIKGEGITEGLDWLIDVIKEEQ 181
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 95.1 bits (235), Expect = 1e-25
Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 6/169 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ ++MLGLD+AGKTT L + + PT+GFN + + + +G IWDVGGQ+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTL-----EHRGFKLNIWDVGGQK 57
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
LR W++Y TDG+I+V+DS D +RM++ + EL + +LI ANKQDLP
Sbjct: 58 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
A+ I++ L L + + H A+TG+ L GI+ L I +
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQ-GCSAVTGEDLLPGIDWLLDDISSR 165
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.0 bits (225), Expect = 6e-24
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I+++G GK+ L R D++ + + TIG + K+K K + IWD GQE+
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF-KIKTVDINGKKVKLQIWDTAGQER 63
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + +Y R GII V D TD + + KT+ + N +L++ NK D+
Sbjct: 64 FRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR 122
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ G + + +I+ + A D ++E L +LI +K
Sbjct: 123 VVTADQ----GEALAKELGIPFIE-SSAKNDDNVNEIFFTLAKLIQEK 165
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 89.7 bits (221), Expect = 1e-23
Identities = 78/161 (48%), Positives = 113/161 (70%), Gaps = 6/161 (3%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+ K I+F +WDVGGQ+K
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQDK 56
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+RPLW+ Y + T G+IFV+DS D ER+ E + EL++ + ++ + +L+ ANKQDLPNA
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
+ +I LGL+ L + + Y ATCA +GDGL+EG++ L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQ-ATCATSGDGLYEGLDWL 156
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.5 bits (221), Expect = 3e-23
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
I+++G GK++ L R D + + KVK IWD GQE+
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 69
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R L SY R G+I V D T + ++ L + ++ +++ NK D N
Sbjct: 70 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-- 127
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKT 194
+++++ GL + +I+ A T DG+ EL + I++ L ++
Sbjct: 128 --REVDRNEGLKFARKHSMLFIE-ASAKTCDGVQCAFEELVEKIIQTPGLWES 177
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 89.0 bits (219), Expect = 3e-23
Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 11/168 (6%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++ LGLD+AGKTT L+ LK D+ PT E++ I F +D+GG +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAI-----GNIKFTTFDLGGHIQA 57
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R LWK Y +GI+F++D+ D ER +E ++EL + +VP +IL NK D PNA+
Sbjct: 58 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117
Query: 142 QIKQIEKLLGLYELN------NMHLYYIQATCAITGDGLHEGINELYQ 183
++ LGL + + +G E L Q
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 89.5 bits (221), Expect = 4e-23
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 7/182 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y + + TIG + + ++ K + IWD GQE+
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQER 67
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + SY R + GII V D TD E VK ++ I V L++ NK DL +
Sbjct: 68 FRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK 126
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKMNKV 200
++ E + + T A+ + + + + I + Q N+ +
Sbjct: 127 RVVEYDVA----KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 182
Query: 201 KK 202
K+
Sbjct: 183 KE 184
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 88.5 bits (218), Expect = 8e-23
Identities = 59/170 (34%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
++++GLD+AGKTT LY+ ++ ++T PTIG N E++ FL+WD+
Sbjct: 12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI-----VINNTRFLMWDI 66
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GGQE LR W +Y T+ +I V+DSTD ER+ + EL K + + D +LI ANKQ
Sbjct: 67 GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 126
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
D+ + + +I + L L + + + CA+TG+GL +G+ + +
Sbjct: 127 DVKECMTVAEISQFLKLTSIKDHQWHIQA-CCALTGEGLCQGLEWMMSRL 175
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.5 bits (216), Expect = 1e-22
Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 7/170 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GKT L+R D + + TIG + + ++ K I IWD GQE+
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG-KRIKLQIWDTAGQER 67
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + +Y R GI+ V D T+ + + ++ + + I+ + + +V +IL NK D+ +
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGNKCDVNDK 126
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
Q+ + G + + +++ T A + L + I K
Sbjct: 127 RQVSKER---GEKLALDYGIKFME-TSAKANINVENAFFTLARDIKAKMD 172
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 87.2 bits (215), Expect = 2e-22
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 5/167 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
I+++G S GKT+ L+R D + + KVK K I IWD GQE+
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R + +Y R G I + D T+ E V+ + + + +L++ NK D+ +
Sbjct: 68 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA-QVLLVGNKCDMEDER 126
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ L A + + L +I +K
Sbjct: 127 VVSSERGRQLADHLGFEFFE----ASAKDNINVKQTFERLVDVICEK 169
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.1 bits (212), Expect = 8e-22
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIG---------FNCEKVKGQIGKCKGIN 69
+ ++ LG GKTT LYR +++ + T+G +N + G GK ++
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
+WD GQE+ R L ++ R G + + D T + V+ + + N N I+
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125
Query: 130 ILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
++ NK DLP+ ++ + + + + Y + T A TG + + + L LI+K+
Sbjct: 126 LIGNKADLPDQREVNERQ---ARELADKYGIPYFE-TSAATGQNVEKAVETLLDLIMKRM 181
Query: 190 K 190
+
Sbjct: 182 E 182
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 85.1 bits (209), Expect = 1e-21
Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ +V LGLD+AGKTT L+ LK D+ VPT+ E++ G+ F +D+GG
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL-----TIAGMTFTTFDLGGH 67
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
+ R +WK+Y +GI+F++D D ER+ E K EL + + NVPILIL NK D P
Sbjct: 68 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127
Query: 139 NAIQIKQIEKLLGLYELN-----------NMHLYYIQATCAITGDGLHEGINELYQLI 185
AI +++ ++ GLY N + + G EG + Q I
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.4 bits (205), Expect = 5e-21
Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 5/169 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+++G GK+ L++ ++ + K K + IWD GQE+
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R + +SY R G + V D T E + L ++IL + +A
Sbjct: 68 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDAD 125
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+ + + N + T A+TG+ + E + + IL K +
Sbjct: 126 REVTFLEASRFAQENELMFL---ETSALTGENVEEAFVQCARKILNKIE 171
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.9 bits (204), Expect = 2e-20
Identities = 37/191 (19%), Positives = 64/191 (33%), Gaps = 21/191 (10%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+++LG +GK+T + +++ V T G K + +NF ++DVGGQ
Sbjct: 9 LLLLGAGESGKSTIVKQMRILHV---VLTSGIFETKFQV-----DKVNFHMFDVGGQRDE 60
Query: 82 RPLWKSYTRCTDGIIFVIDST----------DVERMEEVKIELIKTIKNNDNFNVPILIL 131
R W IIFV+ S+ R++E N + +++
Sbjct: 61 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120
Query: 132 ANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKL 191
NKQDL + K+ + Y A G + I +
Sbjct: 121 LNKQDLLAEKVLAGKSKIEDYFPEFAR---YTTPEDATPEPGEDPRVTRAKYFIRDEFLR 177
Query: 192 QKTNKMNKVKK 202
T +
Sbjct: 178 ISTASGDGRHY 188
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 81.2 bits (199), Expect = 9e-20
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++ +GL +GKT RL QY +T +I + K + LI G +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGN-SLTLIDLPGHESLR 61
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVER-MEEVKIELIKTIKNNDNFN--VPILILANKQDLP 138
L + ++FV+DS +R +++V L + + ++ +LI NKQD+
Sbjct: 62 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121
Query: 139 NAIQIKQIEKLL 150
A K I++ L
Sbjct: 122 MAKSAKLIQQQL 133
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 79.6 bits (195), Expect = 3e-19
Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 38/201 (18%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ +++LG +GK+T + +++ + VPT G Q + + DVGGQ
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFR-----MVDVGGQR 56
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVER----------MEEVKIELIKTIKNNDNFNVPIL 129
R W I+F++ ++ ++ MEE K I N ++
Sbjct: 57 SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116
Query: 130 ILAN-KQDLPNAIQIKQIEKLLGLYELNNM---------------------HLYYIQATC 167
+ N K L I + Y+ + Y TC
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176
Query: 168 AITGDGLHEGINELYQLILKK 188
A + + + IL+
Sbjct: 177 ATDTENIRFVFAAVKDTILQL 197
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 77.1 bits (188), Expect = 1e-18
Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I++LGLD AGKTT LYRL+ + + T+PTIGFN E V K + F +WD+GG
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTY-----KNLKFQVWDLGGLT 60
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+RP W+ Y TD +I+V+DS D +R+ K EL+ ++ + +++ ANKQD+
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
A+ ++ LGL L + + T A G GL E + L + + ++
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFK-TSATKGTGLDEAMEWLVETLKSRQ 169
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (189), Expect = 1e-18
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 5/172 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V++G GK+ L R +++ + + K I IWD GQE+
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R + +Y R G + V D E V+ +K ++++ + N+ I+++ NK DL +
Sbjct: 67 RRITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLR 125
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
+ E +L +I+ T A+ + E + I + ++
Sbjct: 126 AVPTDE---ARAFAEKNNLSFIE-TSALDSTNVEEAFKNILTEIYRIVSQKQ 173
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.3 bits (184), Expect = 6e-18
Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 5/169 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+++G GK+ L + ++ + K I IWD GQE
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 65
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R + +SY R G + V D T ++ + + + N+ I+++ NK DL
Sbjct: 66 RSITRSYYRGAAGALLVYDITR-RETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE--- 121
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+ +++ G L +++ T A T + E + I +K +
Sbjct: 122 SRRDVKREEGEAFAREHGLIFME-TSAKTACNVEEAFINTAKEIYRKIQ 169
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (183), Expect = 9e-18
Identities = 34/168 (20%), Positives = 74/168 (44%), Gaps = 8/168 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
++++G GKT L R K +L + T+G + + K + +WD GQE
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK-VKLQMWDTAGQE 67
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+ R + +Y R ++ + D T+ + ++ L + + + +V +++L NK D +
Sbjct: 68 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH-DVALMLLGNKVDSAH 126
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+K+ + G L +++ T A TG + + + + +
Sbjct: 127 ERVVKRED---GEKLAKEYGLPFME-TSAKTGLNVDLAFTAIAKELKR 170
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.3 bits (184), Expect = 1e-17
Identities = 41/202 (20%), Positives = 68/202 (33%), Gaps = 40/202 (19%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
V I++LG +GK+T L +++ PT G + + + K + DVGGQ
Sbjct: 3 VKILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFK-----MVDVGGQR 55
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELIKTIKNNDNFNVPIL 129
R W I+F++ S++ + R+ E + N NV I+
Sbjct: 56 SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115
Query: 130 ILANKQ-DLPNAIQIKQI----------------------EKLLGLYELNNMHLYYIQAT 166
+ NK L +Q+ I E G Y T
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFT 175
Query: 167 CAITGDGLHEGINELYQLILKK 188
AI + + ++ IL
Sbjct: 176 TAINTENIRLVFRDVKDTILHD 197
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.5 bits (182), Expect = 1e-17
Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 5/164 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+++G GK+ L++ +++ P + + I IWD GQE+
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R + +SY R G + V D T + +N N N I+++ NK DL
Sbjct: 67 RAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 125
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
+ E L +++ A TG+ + + E + I
Sbjct: 126 DVTYEE---AKQFAEENGLLFLE-ASAKTGENVEDAFLEAAKKI 165
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.9 bits (180), Expect = 2e-17
Identities = 32/171 (18%), Positives = 70/171 (40%), Gaps = 2/171 (1%)
Query: 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77
+S+ +V+LG + GK++ + R + + + + F IWD G
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ L Y R + V D T + + + + + + + ++ I ++ NK D+
Sbjct: 62 QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDM 120
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+++ + G L + + T A TG+ +++ + + I K
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFE-TSAKTGENVNDVFLGIGEKIPLK 170
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.3 bits (179), Expect = 4e-17
Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 5/169 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
IV++G GKT + R + +K + + IWD GQE+
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R + +SY R + +I D T E + L + + N + +L+
Sbjct: 68 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE 127
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+Q +YY++ T A D + + +L ++ + +
Sbjct: 128 VSQQR----AEEFSEAQDMYYLE-TSAKESDNVEKLFLDLACRLISEAR 171
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.8 bits (180), Expect = 4e-17
Identities = 36/201 (17%), Positives = 64/201 (31%), Gaps = 41/201 (20%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
V +++LG +GK+T + ++K G K ++F ++DVGGQ
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKI----IHEAGTGIVETHF-----TFKDLHFKMFDVGGQR 53
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELIKTIKNNDNFNVPIL 129
R W IIF + +D + RM E N + I+
Sbjct: 54 SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113
Query: 130 ILAN-KQDLPNAIQIKQIE---------------------KLLGLYELNNMHLYYIQATC 167
+ N K I+ + + L + + Y TC
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173
Query: 168 AITGDGLHEGINELYQLILKK 188
A + + + +I+K
Sbjct: 174 ATDTKNVQFVFDAVTDVIIKN 194
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 72.4 bits (176), Expect = 8e-17
Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 7/167 (4%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ + ++GL +GKTT + + Q+ + +PT+GFN K+ + +WD+GGQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT-----KGNVTIKLWDIGGQ 57
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
+ R +W+ Y R I++++D+ D E++E K EL + +P+L+L NK+DLP
Sbjct: 58 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 117
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
A+ K++ + + L + + + D + + L Q
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYS-ISCKEKDNIDITLQWLIQHS 163
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.6 bits (169), Expect = 1e-15
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 5/166 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V+LG GKT+ + R +++ + T K K +N IWD GQE+
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
L Y R ++G I V D TD + ++VK + + K N ++ +
Sbjct: 66 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV--GNKIDLEKE 123
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+ I++ E Y+ T A G+ E +L + +++
Sbjct: 124 RHVSIQEAESYAESVGAKHYH---TSAKQNKGIEELFLDLCKRMIE 166
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.3 bits (163), Expect = 8e-15
Identities = 37/190 (19%), Positives = 62/190 (32%), Gaps = 17/190 (8%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77
++ V++G + GKT L +++ VPT+ N G+ + +D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL--FDTAG 60
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE L TD + E VK E + P L++ + DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK-EKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 138 P-----------NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186
N + E L Y A+T GL +E L
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYV--ECSALTQKGLKNVFDEAILAAL 177
Query: 187 KKRKLQKTNK 196
+ + +K+ +
Sbjct: 178 EPPEPKKSRR 187
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 66.9 bits (162), Expect = 1e-14
Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 5/167 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++M+G GK+ + +D+++ + + K + + I D GQE
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQID-ILDTAGQEDY 65
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
+ +Y R +G + V T++E + ++ ++ NVP L++ NK DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
Q+ E + N ++ T A T + + +L + I +
Sbjct: 126 QVSVEEAKNRADQWNVNYVE----TSAKTRANVDKVFFDLMREIRAR 168
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.4 bits (163), Expect = 1e-14
Identities = 33/189 (17%), Positives = 58/189 (30%), Gaps = 16/189 (8%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
I++ G ++GKT+ L L D TV + G + D G KL
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL------SAADYDGSGVTLVDFPGHVKL 59
Query: 82 RPLWKSY-----TRCTDGIIFVIDSTDVERMEEVKIELIKT---IKNNDNFNVPILILAN 133
R Y I V + D +++ L+ +++ + ILI N
Sbjct: 60 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119
Query: 134 KQDLPNAIQIKQIEKLLGLYELNNMH-LYYIQATCAITGDGLHEGINELYQLILKKRKLQ 192
K +L A +I+ L E+ + + ++ +
Sbjct: 120 KSELFTARPPSKIKDALE-SEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFK 178
Query: 193 KTNKMNKVK 201
N V
Sbjct: 179 FANLEASVV 187
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.2 bits (160), Expect = 1e-14
Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 5/166 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V+LG + GK++ + R Q+ + + + F IWD GQE+
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
L Y R I V D T+ E K + + + N+ I + NK DL N
Sbjct: 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP-NIVIALSGNKADLANKR 127
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+ E + + + + T A T ++E + + + K
Sbjct: 128 AVDFQEAQSYADDNSLLFME----TSAKTSMNVNEIFMAIAKKLPK 169
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.7 bits (159), Expect = 2e-14
Identities = 28/167 (16%), Positives = 66/167 (39%), Gaps = 9/167 (5%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V+LG GK+ + ++ + + + ++ I D G E+
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVD-SSPSVLEILDTAGTEQF 64
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
+ Y + G I V + + +++K + I+ VP++++ NK DL +
Sbjct: 65 ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER 124
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ E G +++ T A + ++EL+ I+++
Sbjct: 125 EVSSSE---GRALAEEWGCPFME-TSAKSK----TMVDELFAEIVRQ 163
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.9 bits (154), Expect = 1e-13
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 6/173 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+++LG GKT+ ++R D+Y TIG + + + K +WD GQE+
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 64
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN---NDNFNVPILILANKQDL 137
+ L ++ R D + V D T+ E +K + + + N P +IL NK D
Sbjct: 65 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 124
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+ +I + L + ++ T A + E+ + L++ +
Sbjct: 125 EESKKIVSEKSAQELAKSLGDIPLFL--TSAKNAINVDTAFEEIARSALQQNQ 175
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.3 bits (150), Expect = 4e-13
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 5/164 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V LG S GKT+ + R +D + NT K + + I +WD GQE+
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R L SY R + + V D T+V ++ + I ++ +V I+++ NK DL +
Sbjct: 63 RSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADKR 121
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
Q+ IE+ + N+ T A G + + + +
Sbjct: 122 QV-SIEEGERKAKELNVMFIE---TSAKAGYNVKQLFRRVAAAL 161
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.0 bits (149), Expect = 8e-13
Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 9/179 (5%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+++LG GKT+ + + ++ TIG + + + + + IWD GQE+
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQER 63
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIE---LIKTIKNNDNFNVPILILANKQDL 137
+ L ++ R D + V D T + + + D N P ++L NK DL
Sbjct: 64 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNK 196
N + + + N + T A + + + + LK+ +
Sbjct: 124 ENRQVATKRAQAWCYSKNNIPYFE----TSAKEAINVEQAFQTIARNALKQETEVELYN 178
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.7 bits (146), Expect = 2e-12
Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 7/177 (3%)
Query: 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIW 73
A SS +++LG GK++ + R +++ + K + IW
Sbjct: 1 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60
Query: 74 DVGGQEKLRPLWKSYTRCTDGII---FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
D GQE+ R L + R +D + V DS + + K E I + + P +I
Sbjct: 61 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 120
Query: 131 LANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
L NK D+ + E+ N + Y+ T A + E + +L
Sbjct: 121 LGNKIDISE--RQVSTEEAQAWCRDNGDYPYF--ETSAKDATNVAAAFEEAVRRVLA 173
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.4 bits (145), Expect = 2e-12
Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 2/161 (1%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
I+++G + GKT YR ++ + + + + I +WD GQE+
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 82 RPL-WKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + Y R ++FV D T++ + + + ++ ++P +++ NK DL +
Sbjct: 65 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS- 123
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
+ + ++M L+ A D + L
Sbjct: 124 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (142), Expect = 9e-12
Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77
++ V++G + GKT L + + +PT+ N GK +N +WD G
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP--VNLGLWDTAG 62
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE L TD + E V+ + ++++ N PI+++ K DL
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDL 121
Query: 138 PNAIQIKQIEKLLGLYELNNMH----------LYYIQATCAITGDGLHEGINELYQLILK 187
+ + K L + + Y++ A+T GL +E + +L
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE-CSALTQRGLKTVFDEAIRAVLC 180
Query: 188 K 188
Sbjct: 181 P 181
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 2e-11
Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 5/174 (2%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
S + +V++G GK+ + +++ + + ++ G
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
+E + Y R G + V D + EV + ++ D + P++++ NK D
Sbjct: 64 QEEFGAM-REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122
Query: 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
L + Q+ + E + + A + E +L + + K ++
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFE----ASAKLRLNVDEAFEQLVRAVRKYQE 172
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.7 bits (138), Expect = 2e-11
Identities = 29/167 (17%), Positives = 67/167 (40%), Gaps = 4/167 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V++G GK+ + ++ + + + D GQE+
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKH-TEIDNQWAILDVLDTAGQEEF 65
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
+ + Y R DG + V TD E V ++ D + P++++ANK DL +
Sbjct: 66 SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ + + + N + YI+ + + + ++L ++I ++
Sbjct: 126 KVTRDQGKEMATKYN---IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.3 bits (137), Expect = 4e-11
Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 19/187 (10%)
Query: 14 ASGSSSV--HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINF 70
A G ++ V++G + GKT L D + VPT+ + GK
Sbjct: 2 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQ--YLL 59
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
++D GQE L TD + + + VK E + +K NVP L+
Sbjct: 60 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLL 118
Query: 131 LANKQDLPNAIQIKQ-----------IEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179
+ + DL + + +E+ L + Y A+T GL +
Sbjct: 119 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV--ECSALTQKGLKTVFD 176
Query: 180 ELYQLIL 186
E IL
Sbjct: 177 EAIIAIL 183
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.9 bits (136), Expect = 4e-11
Identities = 30/166 (18%), Positives = 69/166 (41%), Gaps = 6/166 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V++G GK+ +L + +++ + + + + + I D GQE+
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEY 64
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
+ Y R +G + V + + E++ + + D+ +VP++++ NK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART 124
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+ + + + YI+ T A T G+ + L + I +
Sbjct: 125 VESRQAQ----DLARSYGIPYIE-TSAKTRQGVEDAFYTLVREIRQ 165
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.9 bits (133), Expect = 9e-11
Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 6/169 (3%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
++ +V++G + GK++ + R + + + + ++WD GQ
Sbjct: 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ + K+Y R + V +TD E E + K + ++P ++ NK DL
Sbjct: 62 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDLL 119
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+ IK E L T + E L + L+
Sbjct: 120 DDSCIKNEEAEGLAKRLKLRFYR----TSVKEDLNVSEVFKYLAEKHLQ 164
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 1e-10
Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 6/167 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V+LG GK+ + ++ PTI + K C+ I D G E+
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ--VEVDCQQCMLEILDTAGTEQ 63
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+ Y + G V T +++ + ++ D +VP++++ NK DL +
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+ + + + N + A + ++E +L + I +
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLE---SSAKSKINVNEIFYDLVRQINR 167
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 1e-10
Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 17/178 (9%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V++G + GKT L DQ+ VPT+ N K + +WD G E
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD--IEVDGKQVELALWDTAGLED 62
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
L TD I+ + +E + + +K+ NVPI+++ NK+DL N
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 121
Query: 141 IQIKQ-----------IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
++ E+ + Y A T DG+ E + L+
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM--ECSAKTKDGVREVFEMATRAALQ 177
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.0 bits (131), Expect = 2e-10
Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 5/166 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ + +LG GK++ ++R D + + K + + FLIWD G E
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+ R L Y R + I V D T E +K + + ++ V +
Sbjct: 65 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
+++ K +++H +++ T A ++E E+ + I
Sbjct: 125 REVMERDAKDYA----DSIHAIFVE-TSAKNAININELFIEISRRI 165
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 9e-10
Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 8/171 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V++G GKTT + R ++ I F +WD GQEK
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 65
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
L Y I + D T + V ++ N+PI++ NK D+ +
Sbjct: 66 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRK 123
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQ 192
+ +L Y A + + L + ++ L+
Sbjct: 124 VKAKSIV-----FHRKKNLQYYD-ISAKSNYNFEKPFLWLARKLIGDPNLE 168
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (124), Expect = 2e-09
Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 7/171 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+ + G GK++ + R + + +PT+ +V I D G +
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV--ISCDKSICTLQITDTTGSHQ 62
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+ + I V T + +EE+K + + + ++L + +
Sbjct: 63 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKL 191
+ Q + L T A + E EL L K+R +
Sbjct: 123 SREVQSSEAEALARTWKCAFME---TSAKLNHNVKELFQELLNLE-KRRTV 169
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 3e-09
Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 5/169 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V++G GK+ + ++ + + + + I D GQE+
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQ-CVIDDRAARLDILDTAGQEEF 66
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
+ + Y R +G + V TD EE+ + ++ D P++++ NK DL +
Sbjct: 67 GAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQR 126
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
Q+ Q E +L ++ A + + +EL ++I K ++
Sbjct: 127 QVTQEEGQQLARQLKVTYME----ASAKIRMNVDQAFHELVRVIRKFQE 171
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.7 bits (117), Expect = 2e-08
Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 20/179 (11%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
IV++G GKT L+ D + N VPT+ N + I +WD G
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS--FEIDTQRIELSLWDTSGSPY 62
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+ +D ++ D + E ++ V + K N +L++ K DL
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKK-WKGEIQEFCPNTKMLLVGCKSDLRTD 121
Query: 141 IQIK-----------QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ ++ + + Y A+ + +++ +
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYI--ECSALQS---ENSVRDIFHVATLA 175
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 5e-08
Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 6/169 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+++LG GK+ + G ++ + + + +++D+ Q+
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRS--IVVDGEEASLMVYDIWEQDGG 61
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R L D + V TD E+ ++ + +VPI+++ NK DL +
Sbjct: 62 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
++ E + + T A + + + I +R
Sbjct: 122 EVSVDEGRACAVVFDCKFIE----TSAALHHNVQALFEGVVRQIRLRRD 166
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (109), Expect = 2e-07
Identities = 27/176 (15%), Positives = 62/176 (35%), Gaps = 10/176 (5%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ + +LG +GK++ ++R Y T +K + + LI + G
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKE--MLVDGQTHLVLIREEAGAP 63
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQDL 137
++ D +IFV D + V + +++ + + ++ + +
Sbjct: 64 -----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 118
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
+ + + Y + TCA G + E+ Q ++ RK Q+
Sbjct: 119 SASSPRVVGDARARALCADMKRCSYYE-TCATYGLNVDRVFQEVAQKVVTLRKQQQ 173
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 46.2 bits (108), Expect = 4e-07
Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 14/171 (8%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+ ++G +AGK++ L + + P G + + F + D+ G +
Sbjct: 4 VGLVGYPNAGKSSLLAAM-TRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG 62
Query: 82 RPLWKSYTR-------CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
K T +++V+D+ D + + P L+ NK
Sbjct: 63 ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
DL +K + L + A+TG GL L+ L+
Sbjct: 123 VDLLEEEAVKALADALAR------EGLAVLPVSALTGAGLPALKEALHALV 167
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 5e-07
Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 6/170 (3%)
Query: 22 IVMLGLDSAGKTTALYRL--KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+V++G GK+T D + +G + + + L+ +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 65
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+ L + D + V TD E+ I+ + ++PI+++ NK DL
Sbjct: 66 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 125
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
++ E + + T A + E + + + +R
Sbjct: 126 CREVSVSEGRACAVVFDCKFIE----TSAAVQHNVKELFEGIVRQVRLRR 171
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 1e-06
Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 5/171 (2%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
S S I +LG S GK++ + Q++++ N + + + + D
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVN-GQEYHLQLVDTA 60
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
GQ++ ++Y+ +G I V T ++ E +K+ K + +PI+++ NK+D
Sbjct: 61 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
Query: 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
L I E N L + A + + K
Sbjct: 121 LHMERVISYEEGKALAESWNAAFLE----SSAKENQTAVDVFRRIILEAEK 167
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (96), Expect = 1e-05
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 9/174 (5%)
Query: 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
+ V + + G GK+ + R +++ PT+ + + L
Sbjct: 1 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTA-- 58
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
++ + + R +G + V D TD EEV + NV ++++ NK D
Sbjct: 59 -GQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 117
Query: 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDG-LHEGINELYQLILKKR 189
L ++ Q+ E EL A TG+G + E EL + + ++R
Sbjct: 118 LDHSRQVSTEEGEKLATELACAFYE----CSACTGEGNITEIFYELCREVRRRR 167
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 39.6 bits (91), Expect = 5e-05
Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 28/177 (15%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V++G + GK+T L RL + G + + +I +GI F I D G
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEI-VIRGILFRIVDTAGVRS 60
Query: 81 LRPLW---------KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
D ++FV+D++ E+ KI K
Sbjct: 61 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVI------ 114
Query: 132 ANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
NK D+ I ++I+ LG ++ A+ G EG+ +L + I ++
Sbjct: 115 -NKVDVVEKINEEEIKNKLGTDR-------HMVKISALKG----EGLEKLEESIYRE 159
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 37.8 bits (86), Expect = 3e-04
Identities = 21/170 (12%), Positives = 58/170 (34%), Gaps = 6/170 (3%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I + G + GK++ + L + L + + + I + + G +
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVER-----MEEVKIELIKTIKNNDNFNVPILILANKQ 135
+ +++ R + I + + ++ + + +P++++A K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
D + + K++ LN + + T G E + ++I
Sbjct: 145 DKIPKGKWDKHAKVV-RQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 36.7 bits (83), Expect = 8e-04
Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 9/171 (5%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVP-----TIGFNCEKVKGQIGKCKGINFLIWD 74
+ + G +AGK++AL L + L T N +V + +
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
V + K + ++ +K + I+ + N+ +L+L K
Sbjct: 77 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
D + K ++ L ++ ++ +G+++L Q +
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK----QGVDKLRQKL 183
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 34.7 bits (78), Expect = 0.003
Identities = 24/180 (13%), Positives = 52/180 (28%), Gaps = 17/180 (9%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
I+ G + GK+T +YRL + + G + ++ + K I+ +
Sbjct: 3 IIFAGRSNVGKSTLIYRL-TGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVER----------------MEEVKIELIKTIKNNDNFN 125
+ I + DV ++ + +
Sbjct: 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
+P ++ NK D +Q + A GD + N ++++I
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 202 | |||
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 100.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 100.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.97 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.96 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.96 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.94 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.94 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.94 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.93 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.93 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.93 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.93 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.93 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.92 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.92 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.91 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.9 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.89 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.89 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.88 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.88 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.88 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.87 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.84 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.82 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.81 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.8 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.8 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.77 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.76 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.75 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.73 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.73 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.69 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.67 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.57 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.56 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.54 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.54 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.37 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.2 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.19 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.07 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.01 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.96 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.54 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.48 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.41 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.3 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.25 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.21 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.13 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.1 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.1 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.05 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.01 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.89 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.87 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.87 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.85 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.82 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.81 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.74 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.7 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.7 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.68 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.68 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.68 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.65 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.62 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.62 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.62 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.59 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.58 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.58 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.55 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.54 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.51 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.51 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.48 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.46 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.46 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.46 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.44 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.44 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.43 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.43 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.43 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.39 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.35 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.32 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.29 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.29 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.25 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.23 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.23 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.22 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.21 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.2 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.2 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.2 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.2 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.2 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.19 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.19 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.18 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.16 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.16 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.14 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.13 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.13 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.13 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.06 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.05 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.04 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.03 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.03 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.02 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.01 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.01 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.0 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.98 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.97 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.95 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.93 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.91 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 96.9 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.9 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.89 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.85 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.84 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.82 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.81 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.8 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.76 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.72 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.67 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.63 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.6 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.6 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.55 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.54 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.53 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.48 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.46 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.34 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.33 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.3 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.28 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.23 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.22 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.02 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.0 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.95 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.93 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.91 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.9 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.88 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.87 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.87 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.85 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.77 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.77 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.76 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.76 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.71 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.69 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.65 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.64 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.63 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.58 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.52 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.44 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.37 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.33 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.33 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.24 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.22 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.21 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.18 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.17 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.17 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.16 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 94.94 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.91 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.81 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 94.71 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.66 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.53 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.51 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 94.48 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.44 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.38 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.28 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 94.2 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.14 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.12 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.95 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 93.88 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.6 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 93.58 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 93.25 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 93.16 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.48 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.4 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 92.22 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.41 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 91.4 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 90.83 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 90.18 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 89.39 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 89.13 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 89.01 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.19 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 87.96 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.81 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 87.45 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 87.13 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 87.02 | |
| d1eg7a_ | 549 | Formyltetrahydrofolate synthetase {Moorella thermo | 87.0 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 86.87 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 86.67 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 85.95 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.78 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.66 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.81 | |
| d1kjwa2 | 199 | Guanylate kinase-like domain of Psd-95 {Rat (Rattu | 82.79 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 82.48 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 82.45 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 81.89 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 81.69 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.48 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 81.14 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 80.4 |
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-37 Score=214.46 Aligned_cols=169 Identities=18% Similarity=0.252 Sum_probs=138.1
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
|+..+.+||+++|++|||||||+++|.++.+... .++ ........+.. ++..+.+.+||++|++++...+..+++++
T Consensus 1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t-~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~ 78 (173)
T d2fn4a1 1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPT-IEDSYTKICSV-DGIPARLDILDTAGQEEFGAMREQYMRAG 78 (173)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTT-CCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccc-cccceeeEecc-CCeeeeeeccccccccccccccchhhccc
Confidence 3456789999999999999999999999888744 444 33333344444 56788999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
|++|+|||++++.+|..+..|+..+.......+.|+++|+||+|+.+.. ...+.+.+ +...++++++|||++
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~------~~~~~~~~~e~Sak~ 152 (173)
T d2fn4a1 79 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF------GASHHVAYFEASAKL 152 (173)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH------HHHTTCEEEECBTTT
T ss_pred eeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHH------HHhcCCEEEEEeCCC
Confidence 9999999999999999999999888766556689999999999987543 33333333 234567899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q psy1315 171 GDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~~ 190 (202)
|.||+++|+.|++.+.++++
T Consensus 153 g~gv~e~f~~l~~~i~k~~~ 172 (173)
T d2fn4a1 153 RLNVDEAFEQLVRAVRKYQE 172 (173)
T ss_dssp TBSHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999876654
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-37 Score=212.07 Aligned_cols=163 Identities=15% Similarity=0.155 Sum_probs=120.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
+||+++|++|||||||++++.+..+....++.+..+. ..+.. ++..+.+.+||++|++++..++..+++++|++|+||
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~-~~i~~-~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~ 79 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 79 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------CEEEE-EEEEE-TTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeec-ceeec-cccccceeeeecccccccceecccchhhhhhhceec
Confidence 7999999999999999999998877666666554433 23333 567899999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|++++.++..+..|+..+.........|+++|+||+|+.+... ..+.+.+ +...++++++|||++|.||+++
T Consensus 80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~------~~~~~~~~~e~Sak~~~~v~~~ 153 (168)
T d2gjsa1 80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC------AVVFDCKFIETSAALHHNVQAL 153 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHH------HHHHTSEEEECBTTTTBSHHHH
T ss_pred cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHH------HHhcCCEEEEEeCCCCcCHHHH
Confidence 9999999999999998887765566889999999999976533 3333332 2445678999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1315 178 INELYQLILKKRK 190 (202)
Q Consensus 178 ~~~l~~~~~~~~~ 190 (202)
|++|++.+..++.
T Consensus 154 f~~l~~~i~~~~~ 166 (168)
T d2gjsa1 154 FEGVVRQIRLRRD 166 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998876554
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=3.2e-36 Score=210.39 Aligned_cols=181 Identities=39% Similarity=0.694 Sum_probs=149.4
Q ss_pred CcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 2 GKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 2 g~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
|...+.++..+- ..++.+||+++|++|||||||++++.+..+....||.+....... ...+.+.+||+||++.+
T Consensus 1 ~~~~~~~~~~l~-~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~-----~~~~~~~i~D~~g~~~~ 74 (182)
T d1moza_ 1 GNIFSSMFDKLW-GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS-----YKNLKLNVWDLGGQTSI 74 (182)
T ss_dssp CHHHHHHHGGGT-TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEE-----ETTEEEEEEEEC----C
T ss_pred ChhHHHHHHHHh-CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEe-----eCCEEEEEEeccccccc
Confidence 445666666553 456699999999999999999999999888777888887766554 35688999999999999
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
...+..+++++|++++|||++++.++.....|+..........+.|++||+||+|+.+.....++...+..... ...++
T Consensus 75 ~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~~ 153 (182)
T d1moza_ 75 RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL-KDRSW 153 (182)
T ss_dssp CTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTC-CSSCE
T ss_pred chhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHH-hhCCC
Confidence 99999999999999999999999999999999888777666678999999999999887777777776654433 44578
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++|||++|+|++++|++|++.+.+++
T Consensus 154 ~~~e~SA~~g~gv~e~~~~l~~~i~~~~ 181 (182)
T d1moza_ 154 SIVASSAIKGEGITEGLDWLIDVIKEEQ 181 (182)
T ss_dssp EEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=3.8e-36 Score=208.87 Aligned_cols=171 Identities=39% Similarity=0.663 Sum_probs=148.1
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHh
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS 87 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 87 (202)
++++++...++.+||+++|++|||||||+++|.+..+..+.++.+++...+. ...+.+.+||++|++.+...+..
T Consensus 5 ~~~k~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~-----~~~~~~~i~d~~g~~~~~~~~~~ 79 (176)
T d1fzqa_ 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-----SQGFKLNVWDIGGQRKIRPYWRS 79 (176)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEE-----ETTEEEEEEECSSCGGGHHHHHH
T ss_pred HHHHhhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEec-----cCCeeEeEeeccccccchhHHHH
Confidence 4566777888999999999999999999999999998888888887766654 35688999999999999999999
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++.+|++|+|||++++.++.....++..........+.|++||+||+|+.+..........+..... ....+++++||
T Consensus 80 ~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 158 (176)
T d1fzqa_ 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTI-RDRVWQIQSCS 158 (176)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSSCEEEEECC
T ss_pred HhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHH-HhcCCEEEEEe
Confidence 99999999999999999999999988888877666668999999999999988777777666654332 45678899999
Q ss_pred eecCCCHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQL 184 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~ 184 (202)
|++|+|++++|+||++.
T Consensus 159 A~tg~gv~e~~~~l~~~ 175 (176)
T d1fzqa_ 159 ALTGEGVQDGMNWVCKN 175 (176)
T ss_dssp TTTCTTHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhc
Confidence 99999999999999874
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.2e-36 Score=207.96 Aligned_cols=164 Identities=23% Similarity=0.296 Sum_probs=136.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
+...+||+|+|++|||||||+++|.++.+. .+.++.+.+........ ....+.+.+||+||++++..+++.+++++|+
T Consensus 2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~ 80 (169)
T d3raba_ 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGQERYRTITTAYYRGAMG 80 (169)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEe-ecceEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 456799999999999999999999998876 55677777766666654 5567899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||+++++++.....|+...... .....|+++|+||+|+..... .++.+.+. ...++++++|||++|.
T Consensus 81 ~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~------~~~~~~~~e~Sak~g~ 153 (169)
T d3raba_ 81 FILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLA------DHLGFEFFEASAKDNI 153 (169)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCEEEECBTTTTB
T ss_pred EEEEEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHHHH------HHcCCEEEEecCCCCc
Confidence 99999999999999998888776554 466899999999999876533 33443332 3446789999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILK 187 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~ 187 (202)
|++++|++|++.+.+
T Consensus 154 gv~e~f~~l~~~i~e 168 (169)
T d3raba_ 154 NVKQTFERLVDVICE 168 (169)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-36 Score=208.87 Aligned_cols=166 Identities=22% Similarity=0.286 Sum_probs=138.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
+...+||+++|++|||||||+++|.++.+. ...++.+.++....+.. .+..+.+.+|||||++.+..+++.+++++++
T Consensus 2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~ 80 (171)
T d2ew1a1 2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANA 80 (171)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence 456799999999999999999999998886 45677776666666655 5677899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++|||++++.++.....|+..+... .....|+++|+||+|+.... ..++.+.+. ...++++++|||++|.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~------~~~~~~~~~~SAktg~ 153 (171)
T d2ew1a1 81 LILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFS------EAQDMYYLETSAKESD 153 (171)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH------HHHTCCEEECCTTTCT
T ss_pred EEEeeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHH------HhCCCEEEEEccCCCC
Confidence 99999999999999999999887665 45589999999999986543 334444432 3456689999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
||+++|.+|++.+....
T Consensus 154 gV~e~f~~l~~~l~~~~ 170 (171)
T d2ew1a1 154 NVEKLFLDLACRLISEA 170 (171)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999998876554
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=2.2e-35 Score=202.98 Aligned_cols=164 Identities=39% Similarity=0.663 Sum_probs=142.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.+||+++|++|||||||+++|.+..+..+.||.+.....+. ...+.+.+||+||++.+...+..+++.++++++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 75 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLE-----HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 75 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEE-----ETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeecc-----ccccceeeeecCcchhhhhHHHhhhhhhhccee
Confidence 468999999999999999999999888888888887665543 466899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|||+++..++.....++..........+.|+++|+||+|+.+.....+....+..... ...++++++|||++|+|++++
T Consensus 76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~gv~e~ 154 (165)
T d1ksha_ 76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPG 154 (165)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSSCEEEEECCTTTCTTHHHH
T ss_pred eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhh-hcCCCEEEEEECCCCCCHHHH
Confidence 9999999999998888888776656678999999999999888787777776655444 445789999999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 178 INELYQLILK 187 (202)
Q Consensus 178 ~~~l~~~~~~ 187 (202)
|++|.+++..
T Consensus 155 ~~~l~~~i~~ 164 (165)
T d1ksha_ 155 IDWLLDDISS 164 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999988764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-35 Score=203.87 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=131.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
++.+||+++|++|||||||++++.++.+. .+.|+.+.. ......+ ++..+.+.+||++|.+.+...+..+++.+|++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~-~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 80 (171)
T d2erya1 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCVI-DDRAARLDILDTAGQEEFGAMREQYMRTGEGF 80 (171)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE-EEEEEEE-TTEEEEEEEEECC----CCHHHHHHHHHCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc-eeeeeee-cccccccccccccccccccccccccccccceE
Confidence 45689999999999999999999998876 446666533 3333333 56778999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++|||+++++++..+..|+..+.........|+++|+||+|+... ....+...+. ...++++++|||++|.|
T Consensus 81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~------~~~~~~~~e~Sak~~~~ 154 (171)
T d2erya1 81 LLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLA------RQLKVTYMEASAKIRMN 154 (171)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHH------HHTTCEEEECBTTTTBS
T ss_pred EEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHH------HHcCCEEEEEcCCCCcC
Confidence 999999999999999999988777656668999999999999765 3344444432 34567899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKK 188 (202)
Q Consensus 174 v~~l~~~l~~~~~~~ 188 (202)
|+++|++|++.+.++
T Consensus 155 i~e~f~~l~~~i~k~ 169 (171)
T d2erya1 155 VDQAFHELVRVIRKF 169 (171)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=8.5e-35 Score=201.49 Aligned_cols=164 Identities=47% Similarity=0.854 Sum_probs=142.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.++.+||+++|++|||||||++++.++.+....+|.+....... ...+.+.+||+||+..+...+..+++.++++
T Consensus 9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 83 (173)
T d1e0sa_ 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT-----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 83 (173)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEE-----ETTEEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEee-----ccceeeEEecCCCcchhhhHHHhhhcccceE
Confidence 56689999999999999999999999888877788777665543 4568899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|+|||+++.+++..+..|+............|+++|+||+|+.+.....++...+.+... ...++++++|||++|+||+
T Consensus 84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~e~SA~tg~gv~ 162 (173)
T d1e0sa_ 84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI-RDRNWYVQPSCATSGDGLY 162 (173)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSSCEEEEECBTTTTBTHH
T ss_pred EEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHH-HhCCCEEEEeeCCCCcCHH
Confidence 999999999999999999988877656668999999999999988777777777664433 4557889999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 176 EGINELYQLI 185 (202)
Q Consensus 176 ~l~~~l~~~~ 185 (202)
|+|++|.+.+
T Consensus 163 e~~~~l~~~~ 172 (173)
T d1e0sa_ 163 EGLTWLTSNY 172 (173)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999998753
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.5e-35 Score=206.97 Aligned_cols=175 Identities=25% Similarity=0.353 Sum_probs=141.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.+...+||+|+|++|||||||+++|+++.+. .+.++.+.+.....+.+ .+..+.+.+|||||++++..+++.+++++|
T Consensus 2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~ 80 (194)
T d2bcgy1 2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSH 80 (194)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEE-eeEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence 3556799999999999999999999988876 56788887777666555 567789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++|+|||+++++++.....++..+... .....|+++|+||+|+.+.......... .++...+.++++|||++|.|
T Consensus 81 ~~i~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~----~~~~~~~~~~~e~SAk~g~g 155 (194)
T d2bcgy1 81 GIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAK----EFADANKMPFLETSALDSTN 155 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHH----HHHHHTTCCEEECCTTTCTT
T ss_pred EEEEEEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHh----hhhhccCcceEEEecCcCcc
Confidence 999999999999999999888877665 4668999999999999765332222111 11234567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q psy1315 174 LHEGINELYQLILKKRKLQKTN 195 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~~~~~~~ 195 (202)
++++|++|++.+.+.......+
T Consensus 156 i~e~f~~l~~~i~~~~~~~~~~ 177 (194)
T d2bcgy1 156 VEDAFLTMARQIKESMSQQNLN 177 (194)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccC
Confidence 9999999999887664443333
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-36 Score=208.27 Aligned_cols=160 Identities=20% Similarity=0.228 Sum_probs=133.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||+++|.++.+. .+.||.+..+....+.. ++..+.+.+||++|++.+..++..+++++|++++
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 81 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 81 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECB-TTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccccccc-ccccccccccccccccccceecchhcccccchhh
Confidence 479999999999999999999998876 55788888877777765 6778999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|||+++++||+.+..|+....+. ..+.|+++|+||+|+.......+... ++...++++++|||++|.||+++
T Consensus 82 v~d~~~~~Sf~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~------~~~~~~~~~~e~Sak~~~~v~e~ 153 (170)
T d1i2ma_ 82 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIV------FHRKKNLQYYDISAKSNYNFEKP 153 (170)
T ss_dssp EEETTSGGGGTTHHHHHHHHHHH--HCSCCEEEEEECCCCSCSCCTTTSHH------HHSSCSSEEEEEBTTTTBTTTHH
T ss_pred ccccccccccchhHHHHHHHhhc--cCCCceeeecchhhhhhhhhhhHHHH------HHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999887664 34899999999999977654333222 33456789999999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 178 INELYQLILK 187 (202)
Q Consensus 178 ~~~l~~~~~~ 187 (202)
|++|++.+..
T Consensus 154 f~~l~~~l~~ 163 (170)
T d1i2ma_ 154 FLWLARKLIG 163 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcc
Confidence 9999998864
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.6e-36 Score=205.77 Aligned_cols=159 Identities=21% Similarity=0.302 Sum_probs=134.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||+++|.++.+. .+.||.+.+........ .+..+.+.+||++|++++...+..+++.+|++++
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 80 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 80 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeee-cCceeeeeeeccCCccchhhhhhhhhccCceEEE
Confidence 479999999999999999999988876 56788887777777655 5677899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++++++.+..|+..+... .++.|+++|+||+|+.+... .++.+.+ +...++++++|||++|.||+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~iilVgnK~Dl~~~~~v~~~~~~~~------~~~~~~~~~e~Sak~g~~v~ 152 (164)
T d1z2aa1 81 VFSTTDRESFEAISSWREKVVAE--VGDIPTALVQNKIDLLDDSCIKNEEAEGL------AKRLKLRFYRTSVKEDLNVS 152 (164)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--HCSCCEEEEEECGGGGGGCSSCHHHHHHH------HHHHTCEEEECBTTTTBSSH
T ss_pred EEeccchhhhhhccccccccccc--CCCceEEEeeccCCcccceeeeehhhHHH------HHHcCCEEEEeccCCCcCHH
Confidence 99999999999999888887664 34799999999999976533 3334433 23456789999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 176 EGINELYQLIL 186 (202)
Q Consensus 176 ~l~~~l~~~~~ 186 (202)
++|++|++.+.
T Consensus 153 e~f~~l~~~~l 163 (164)
T d1z2aa1 153 EVFKYLAEKHL 163 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-35 Score=205.05 Aligned_cols=161 Identities=18% Similarity=0.234 Sum_probs=132.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.+||+++|++|||||||+++|+++.+. .+.++.+. ........ ++..+.+.+||++|++.+...+..+++++|+++
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i 79 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-eeeeeeec-CcceEeeccccCCCccccccchHHHhhccccee
Confidence 5789999999999999999999998886 44566553 33333333 567789999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||+++++++..+..|+..+.......+.|++||+||+|+..... ..+.+.. +...++++++|||++|.||
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~------~~~~~~~~~e~Sak~g~~i 153 (167)
T d1kaoa_ 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL------AEEWGCPFMETSAKSKTMV 153 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHH------HHHHTSCEEEECTTCHHHH
T ss_pred eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHH------HHHcCCeEEEECCCCCcCH
Confidence 9999999999999999998887765566899999999999876433 3333222 2344668999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 175 HEGINELYQLIL 186 (202)
Q Consensus 175 ~~l~~~l~~~~~ 186 (202)
+++|++|++.+.
T Consensus 154 ~e~f~~i~~~i~ 165 (167)
T d1kaoa_ 154 DELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=1.7e-34 Score=198.26 Aligned_cols=161 Identities=27% Similarity=0.540 Sum_probs=139.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+++||+++|++|||||||+++|.++.+. .+.||.+.++..+. ...+.+.+||+||++.+...+..++.++++++
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 75 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT-----KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 75 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEE-----ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeee-----eeeEEEEEeeccccccccccccccccccchhh
Confidence 3689999999999999999999998886 56788887776554 35689999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|||+++.+++.....++..+.......+.|+++|+||+|+.+.....++...+..... ...+++++++||++|+|+++
T Consensus 76 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~e~Sa~~g~gv~e 154 (164)
T d1zd9a1 76 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAI-QDREICCYSISCKEKDNIDI 154 (164)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSSCEEEEECCTTTCTTHHH
T ss_pred cccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHH-HhCCCEEEEEeCcCCcCHHH
Confidence 99999999999999999998888766778999999999999887777777666654433 45678999999999999999
Q ss_pred HHHHHHHH
Q psy1315 177 GINELYQL 184 (202)
Q Consensus 177 l~~~l~~~ 184 (202)
+|++|++.
T Consensus 155 ~~~~l~~~ 162 (164)
T d1zd9a1 155 TLQWLIQH 162 (164)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99999874
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.2e-35 Score=202.55 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=133.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.+||+++|++|||||||+++|..+.+.+ +.++.+.... ..... +...+.+.+||++|++.+...++.+++++|++|
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 79 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccc-eeEEe-eeeEEEeccccccCcccccccccccccccceeE
Confidence 47899999999999999999999999874 4666664443 33333 567899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++++|+.+..|+..+.+.....+.|+++|+||+|+..... .++...... ...++++++|||++|.||
T Consensus 80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~g~gv 154 (167)
T d1c1ya_ 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-----QWCNCAFLESSAKSKINV 154 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTSCEEEECBTTTTBSH
T ss_pred EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH-----HhCCCEEEEEcCCCCcCH
Confidence 9999999999999999999887765566899999999999976533 222333221 235688999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 175 HEGINELYQLIL 186 (202)
Q Consensus 175 ~~l~~~l~~~~~ 186 (202)
+++|++|++.+.
T Consensus 155 ~e~F~~l~~~i~ 166 (167)
T d1c1ya_ 155 NEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-35 Score=202.53 Aligned_cols=158 Identities=24% Similarity=0.357 Sum_probs=133.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++|.++++. .+.++.+.......... ++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv 79 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVV 79 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEC-SSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeecc-CCCceeeeecccCCcchhccchHHHhhccceEEEe
Confidence 68999999999999999999998886 55777777777666655 56789999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||++++.++..+..|+...... ...+.|+++|+||+|+.+.. ..++...+ +...++++++|||++|.||++
T Consensus 80 ~d~~~~~s~~~i~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~------~~~~~~~~~e~SAk~g~~v~e 152 (164)
T d1yzqa1 80 YDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERK------AKELNVMFIETSAKAGYNVKQ 152 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHH------HHHTTCEEEECCTTTCTTHHH
T ss_pred eccccccchhhhHhhHHHHHHh-cCCCceEEEEecccchhhhhhhhHHHHHHH------HHHcCCEEEEecCCCCcCHHH
Confidence 9999999999999999887765 34589999999999996543 33333332 234567899999999999999
Q ss_pred HHHHHHHHH
Q psy1315 177 GINELYQLI 185 (202)
Q Consensus 177 l~~~l~~~~ 185 (202)
+|++|.+++
T Consensus 153 ~f~~i~~~l 161 (164)
T d1yzqa1 153 LFRRVAAAL 161 (164)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhh
Confidence 999999875
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.7e-35 Score=203.26 Aligned_cols=162 Identities=20% Similarity=0.257 Sum_probs=134.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.+||+++|++|||||||++++.++.+. .+.|+.+..+ ...... ++..+.+.+||++|++.+...++.+++++|+++
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l 80 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 80 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-cccccc-ccccccccccccccccccccchhhhhhhccEEE
Confidence 4699999999999999999999998876 4556665433 233333 567899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC-C
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD-G 173 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~ 173 (202)
+|||+++++||..+..|+..+.+.....+.|+|+|+||+|+..... .++...+. ...++++++|||+++. |
T Consensus 81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~------~~~~~~~~e~Sak~~~~n 154 (169)
T d1x1ra1 81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA------TKYNIPYIETSAKDPPLN 154 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH------HHHTCCEEEEBCSSSCBS
T ss_pred EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHH------HHcCCEEEEEcCCCCCcC
Confidence 9999999999999999999887765566899999999999977543 34444433 3456789999999875 9
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILK 187 (202)
Q Consensus 174 v~~l~~~l~~~~~~ 187 (202)
|+++|+.|++.+.+
T Consensus 155 V~~~F~~l~~~i~~ 168 (169)
T d1x1ra1 155 VDKTFHDLVRVIRQ 168 (169)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-35 Score=204.78 Aligned_cols=162 Identities=27% Similarity=0.339 Sum_probs=129.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+++|++|||||||+++|.++.+. .+.|+.+.......... ++..+.+.+||++|++.+..+++.+++++|++|
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 80 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 80 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeecc-CCccceeeeeccCCcceecccchhhccCCceeE
Confidence 4689999999999999999999999886 56777787777766655 567899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||+++++||..+..|+...... .....|+++|+||+|+.... ...+.+.+ +...++++++|||++|.||
T Consensus 81 ~v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~------a~~~~~~~~e~Sak~~~~v 153 (167)
T d1z08a1 81 LVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESY------AESVGAKHYHTSAKQNKGI 153 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHH------HHHTTCEEEEEBTTTTBSH
T ss_pred EEEeCCchhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHHHH------HHHcCCeEEEEecCCCcCH
Confidence 999999999999999888776544 34578999999999997653 34444443 2345678999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILK 187 (202)
Q Consensus 175 ~~l~~~l~~~~~~ 187 (202)
+++|++|++.+.+
T Consensus 154 ~e~F~~l~~~i~~ 166 (167)
T d1z08a1 154 EELFLDLCKRMIE 166 (167)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998753
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-35 Score=203.76 Aligned_cols=166 Identities=23% Similarity=0.319 Sum_probs=138.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
+...+||+++|++|||||||+++|.++.+. .+.++.+.+.....+.. +.....+.+||+||++++..++..+++++|+
T Consensus 2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (174)
T d2bmea1 2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 80 (174)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEe-cCcceeEEEEECCCchhhhhhHHHHhhhCCE
Confidence 456799999999999999999999998876 45667777766666554 5677899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||.++++++..+..|+..+... ...+.|+++|+||+|+..... ......+ +...++++++|||++|.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~e~Sak~~~ 153 (174)
T d2bmea1 81 ALLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRF------AQENELMFLETSALTGE 153 (174)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH------HHHTTCEEEECCTTTCT
T ss_pred EEEEEecccchhHHHHhhhhcccccc-cCCceEEEEEEecccccchhchhhhHHHHH------HHhCCCEEEEeeCCCCc
Confidence 99999999999999999999887765 456899999999999865433 2222332 23456789999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
|++++|+++++.+.++.
T Consensus 154 gi~e~f~~l~~~i~~~~ 170 (174)
T d2bmea1 154 NVEEAFVQCARKILNKI 170 (174)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999987553
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-35 Score=202.01 Aligned_cols=161 Identities=22% Similarity=0.327 Sum_probs=133.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+++|++|||||||++++.++.+. .+.++.+.+........ ++..+.+.+||++|++.+..++..+++.+|++
T Consensus 2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ 80 (166)
T d1z0fa1 2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 80 (166)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEE-CCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence 45689999999999999999999998886 44566666666666555 56778999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||+++.+++..+..|+..+... .....|+++|+||+|+.... ..++..... ...++++++|||++|.|
T Consensus 81 ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~Saktg~~ 153 (166)
T d1z0fa1 81 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFA------EENGLLFLEASAKTGEN 153 (166)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECCTTTCTT
T ss_pred EEEeccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHH------HHcCCEEEEEeCCCCCC
Confidence 9999999999999999888877665 56689999999999986543 233334432 33467899999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLI 185 (202)
Q Consensus 174 v~~l~~~l~~~~ 185 (202)
|+++|++|++.+
T Consensus 154 v~e~f~~i~~~i 165 (166)
T d1z0fa1 154 VEDAFLEAAKKI 165 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-35 Score=203.35 Aligned_cols=166 Identities=22% Similarity=0.327 Sum_probs=134.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+|+|++|||||||++++.++.+. .+.++.+.......+.. ++..+.+.+||++|++.+...+..+++.+|++
T Consensus 2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~ 80 (175)
T d2f9la1 2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 80 (175)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEE-CCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence 45789999999999999999999998876 44566666665555544 56778999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||+++++|+.....|+..+... ..++.|+++|+||+|+.+... ....... ....+.++++|||++|.|
T Consensus 81 i~v~d~~~~~S~~~~~~~~~~i~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~------~~~~~~~~~e~Sa~~g~~ 153 (175)
T d2f9la1 81 LLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF------AEKNNLSFIETSALDSTN 153 (175)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH------HHHTTCEEEECCTTTCTT
T ss_pred EEEEECCCcccchhHHHHHHHHHHh-cCCCCcEEEEEeeecccccccchHHHHHHh------hcccCceEEEEecCCCcC
Confidence 9999999999999999999887765 456799999999999976432 2222222 234567899999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy1315 174 LHEGINELYQLILKKRK 190 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~~ 190 (202)
++++|+++++.+.+...
T Consensus 154 i~e~f~~l~~~i~~~~~ 170 (175)
T d2f9la1 154 VEEAFKNILTEIYRIVS 170 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999998865443
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.8e-35 Score=200.87 Aligned_cols=160 Identities=24% Similarity=0.305 Sum_probs=134.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.+||+++|++|||||||+++|..+.+. .+.+|.+.......... ......+.+||++|++.+..++..+++.+|++|
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccc-cccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence 5789999999999999999999999886 55777777776666654 556778899999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++++|..+..|+...... .....|+++|+||+|+.+.. ...+.+.+ +...++++++|||++|.||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~------~~~~~~~~~e~SAk~~~nV 154 (167)
T d1z0ja1 82 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDY------ADSIHAIFVETSAKNAINI 154 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHH------HHHTTCEEEECBTTTTBSH
T ss_pred EEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHH------HHHcCCEEEEEecCCCCCH
Confidence 999999999999999888776655 46689999999999997543 33344443 2345678999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 175 HEGINELYQLI 185 (202)
Q Consensus 175 ~~l~~~l~~~~ 185 (202)
+++|.+|++.+
T Consensus 155 ~e~f~~l~~~i 165 (167)
T d1z0ja1 155 NELFIEISRRI 165 (167)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998875
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-35 Score=202.48 Aligned_cols=162 Identities=19% Similarity=0.229 Sum_probs=134.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
++.+||+++|++|||||||+++|.++.+. .+.||.+..+. ..+.. ++..+.+.+||++|.+.+..+...+++.+|++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ 79 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 79 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE-EEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTSSCCEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccc-eEEec-CcEEEEeeecccccccccccccchhhhhhhhh
Confidence 46789999999999999999999988876 45677776543 22333 66788999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||++++++|..+..|+..+.......+.|+++|+||+|+.... ..++.+.+ +...++++++|||++|.|
T Consensus 80 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~------a~~~~~~~~e~Sak~~~~ 153 (167)
T d1xtqa1 80 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL------AESWNAAFLESSAKENQT 153 (167)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHH------HHHHTCEEEECCTTCHHH
T ss_pred hhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHH------HHHcCCEEEEEecCCCCC
Confidence 9999999999999999999888776566689999999999996643 34444433 234567899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLIL 186 (202)
Q Consensus 174 v~~l~~~l~~~~~ 186 (202)
|+++|+.|++.+.
T Consensus 154 v~~~f~~li~~~~ 166 (167)
T d1xtqa1 154 AVDVFRRIILEAE 166 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=4.5e-35 Score=201.93 Aligned_cols=162 Identities=20% Similarity=0.303 Sum_probs=132.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.+||+++|++|||||||++++.++.+. .+.||.+..+. ..+.. ++..+.+.+||++|++++..++..+++++|+++
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~-~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i 80 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-ccccc-ccccccccccccccccchhhhhhhcccccceeE
Confidence 3579999999999999999999998886 55778775543 23333 567899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++.++..+..|+..+.+.....+.|+++|+||+|+.+.. ..++.+.+. ...++++++|||++|.||
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~------~~~~~~~~e~Sak~g~gv 154 (168)
T d1u8za_ 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA------DQWNVNYVETSAKTRANV 154 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH------HHHTCEEEECCTTTCTTH
T ss_pred EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHH------HHcCCeEEEEcCCCCcCH
Confidence 999999999999999999888776556689999999999986643 334444433 345678999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILK 187 (202)
Q Consensus 175 ~~l~~~l~~~~~~ 187 (202)
+++|++|++.+.+
T Consensus 155 ~e~f~~l~~~i~~ 167 (168)
T d1u8za_ 155 DKVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 9999999988754
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.3e-35 Score=204.39 Aligned_cols=167 Identities=25% Similarity=0.331 Sum_probs=111.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
+...+||+++|++|||||||+++|+++.+. .+.++.+.......+.. ++..+.+.+||+||++.+..+++.+++.+|+
T Consensus 3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~ 81 (173)
T d2fu5c1 3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMG 81 (173)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence 456789999999999999999999998875 55677777776666655 5667899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++.++..+..|+..+... ...+.|+++|+||+|+...... .+.... +...++++++|||++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~------~~~~~~~~~e~Sa~~g~ 154 (173)
T d2fu5c1 82 IMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKL------ALDYGIKFMETSAKANI 154 (173)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHH------HHHHTCEEEECCC---C
T ss_pred EEEEEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHH------HHhcCCEEEEEeCCCCC
Confidence 99999999999999999888887654 5668999999999999765333 222222 23457899999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
||+++|++|++.+.++..
T Consensus 155 gv~e~f~~l~~~i~~k~~ 172 (173)
T d2fu5c1 155 NVENAFFTLARDIKAKMD 172 (173)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 999999999999876653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.9e-35 Score=202.27 Aligned_cols=164 Identities=24% Similarity=0.311 Sum_probs=132.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+|+|++|||||||++++.++++. .+.++.+.+........ ....+.+.+||++|++.+..+++.+++.+|++|
T Consensus 2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 80 (173)
T d2a5ja1 2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 80 (173)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeee-eeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence 4589999999999999999999999876 34555555555554444 566789999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++++|..+..|+..+... ...+.|+++|+||+|+.... ...+..... ...++++++|||++|.||
T Consensus 81 lv~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a------~~~~~~~~e~Sa~tg~~V 153 (173)
T d2a5ja1 81 LVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFA------REHGLIFMETSAKTACNV 153 (173)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCEEEEECTTTCTTH
T ss_pred EEEeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHH------HHcCCEEEEecCCCCCCH
Confidence 999999999999999999887665 45689999999999986543 333333332 345678999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKKR 189 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~ 189 (202)
+++|+++++.+.++.
T Consensus 154 ~e~f~~i~~~i~~~~ 168 (173)
T d2a5ja1 154 EEAFINTAKEIYRKI 168 (173)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-35 Score=202.95 Aligned_cols=165 Identities=24% Similarity=0.291 Sum_probs=128.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
..||+++|++|||||||+++|.++.+++ +.||.+.. ....... ++..+.+.+||++|++.+...++.+++++|++|+
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~-~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 79 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEV-DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 79 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-ccccccc-cccceeeeccccCccchhcccchhhcccchhhhh
Confidence 4699999999999999999999998874 45666533 2333333 5677899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc--------hhhcC-cceEEEEEeee
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL--------YELNN-MHLYYIQATCA 168 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~Sa 168 (202)
|||+++++||+....|+...... ..++.|+++|+||+|+.+............. ..++. ....+|++|||
T Consensus 80 v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA 158 (177)
T d1kmqa_ 80 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 158 (177)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred hcccchhHHHHHHHHHHHHHHHH-hCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999998888877766 3458999999999999764322211111100 01111 23468999999
Q ss_pred ecCCCHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLIL 186 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~ 186 (202)
++|.||+++|+.+++.+.
T Consensus 159 kt~~gi~e~F~~i~~~~l 176 (177)
T d1kmqa_ 159 KTKDGVREVFEMATRAAL 176 (177)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999998775
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.7e-35 Score=200.25 Aligned_cols=162 Identities=23% Similarity=0.274 Sum_probs=130.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
++||+++|++|||||||++++.++.|. .+.||.+..+...... ++..+.+.+||++|++.+. ....+++.+|++++
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~--~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~il 78 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI--DDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVL 78 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEE--TTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccc--cccceEEEEeecccccccc-cchhhhccccccee
Confidence 689999999999999999999999885 5678888765544332 4667899999999998764 56678899999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC-CH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD-GL 174 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v 174 (202)
|||+++++++..+..|+..........+.|+++|+||+|+.... ..++.+.+. ...++++++|||++|. ||
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a------~~~~~~~~e~Saktg~gnV 152 (168)
T d2atva1 79 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA------TELACAFYECSACTGEGNI 152 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH------HHHTSEEEECCTTTCTTCH
T ss_pred ecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHH------HHhCCeEEEEccccCCcCH
Confidence 99999999999998876655444455689999999999997543 344444433 3446789999999998 59
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKKR 189 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~ 189 (202)
+++|+.|++.+.+++
T Consensus 153 ~e~F~~l~~~i~~~r 167 (168)
T d2atva1 153 TEIFYELCREVRRRR 167 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887665
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-35 Score=204.39 Aligned_cols=169 Identities=25% Similarity=0.393 Sum_probs=135.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeeccc---------ccccceEEEEEEcCCCCCchhhH
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQI---------GKCKGINFLIWDVGGQEKLRPLW 85 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~D~~G~~~~~~~~ 85 (202)
+...+||+++|++|||||||+++|+++.+. .+.++.+.++....... .....+.+.+||++|++++..++
T Consensus 2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~ 81 (186)
T d2f7sa1 2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 81 (186)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence 456799999999999999999999998876 34555554444333322 12334789999999999999999
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 163 (202)
..+++++|++|+|||++++.+++.+..|+..+.........|+++|+||+|+..... .++...+. ...++++
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~------~~~~~~~ 155 (186)
T d2f7sa1 82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA------DKYGIPY 155 (186)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCCE
T ss_pred HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHH------HHcCCEE
Confidence 999999999999999999999999999988877765666889999999999976533 33344332 3446789
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
++|||++|+||+++|++|++.+.++..
T Consensus 156 ~e~Sak~~~~i~e~f~~l~~~i~~k~~ 182 (186)
T d2f7sa1 156 FETSAATGQNVEKAVETLLDLIMKRME 182 (186)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876544
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-35 Score=202.43 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=130.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.+||+++|++|||||||+++|+++.+. .+.||.+..+... ... ++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~-~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i 78 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV-ISC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAFI 78 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE-EEE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccc-eee-ccccceeccccccccccccccccccccceeEEE
Confidence 4689999999999999999999998886 4568877554332 222 567789999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccC-CCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNN-DNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
+|||+++++++..+..|+..+.... ...+.|+++|+||+|+.... ..++.+.+ +...++++++|||++|.|
T Consensus 79 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~------~~~~~~~~~e~Sak~~~~ 152 (171)
T d2erxa1 79 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL------ARTWKCAFMETSAKLNHN 152 (171)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHH------HHHHTCEEEECBTTTTBS
T ss_pred EEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHH------HHHcCCeEEEEcCCCCcC
Confidence 9999999999999999987775532 34588999999999996543 33344443 234567899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLIL 186 (202)
Q Consensus 174 v~~l~~~l~~~~~ 186 (202)
|+++|+.|++.+.
T Consensus 153 v~e~f~~l~~~~~ 165 (171)
T d2erxa1 153 VKELFQELLNLEK 165 (171)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-34 Score=198.26 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=134.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.+||+++|++|||||||+++|+++.++. +.++.+..+..... . .+..+.+.+||++|.+.+...++.+++.+++++
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i 79 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-I-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEE-E-TTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecccee-e-eceeeeeeeeeccCccccccchhhhhhcccccc
Confidence 46899999999999999999999998874 46676655444332 2 456789999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
+|||++++.+++.+..|+..+.......+.|+++|+||+|+.... ..++.+.+. ...++++++|||++|.||+
T Consensus 80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~e~Sak~g~gi~ 153 (166)
T d1ctqa_ 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYGIPYIETSAKTRQGVE 153 (166)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHH------HHHTCCEEECCTTTCTTHH
T ss_pred eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHH------HHhCCeEEEEcCCCCcCHH
Confidence 999999999999999999888776556689999999999997643 333443332 3456789999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 176 EGINELYQLILK 187 (202)
Q Consensus 176 ~l~~~l~~~~~~ 187 (202)
++|.+|++.+.+
T Consensus 154 e~f~~i~~~i~~ 165 (166)
T d1ctqa_ 154 DAFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-34 Score=200.12 Aligned_cols=160 Identities=23% Similarity=0.286 Sum_probs=134.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||+++|.++.+. .+.++.+.......... ....+.+.+||++|++.+...+..+++++|++|+
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeec-cceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 579999999999999999999998886 55788887777666655 5667899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||+++++++.....|+..+.+. ..++.|+++|+||+|+..... .+..+.. +...++++++|||++|.||+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~------~~~~~~~~~e~SAk~g~~V~ 157 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSY------ADDNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH------HHHTTCEEEECCTTTCTTHH
T ss_pred EeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHHHH------HHhcCCEEEEeeCCCCCCHH
Confidence 99999999999999888887665 466899999999999876533 3333332 23456799999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 176 EGINELYQLIL 186 (202)
Q Consensus 176 ~l~~~l~~~~~ 186 (202)
++|+.|++.+.
T Consensus 158 e~f~~l~~~i~ 168 (170)
T d1r2qa_ 158 EIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHHHh
Confidence 99999987654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-34 Score=200.91 Aligned_cols=169 Identities=22% Similarity=0.241 Sum_probs=130.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
+.+..+||+++|++|||||||+++|+.+.+. .+.||.+... ...... .+..+.+.+||++|++.+...+..+++.+|
T Consensus 5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~-~~~~~~-~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~ 82 (185)
T d2atxa1 5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 82 (185)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeee-eEEEee-CCceEEeecccccccchhhhhhhhcccccc
Confidence 3567899999999999999999999998886 4567766433 223323 567789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc--------hhhcCc-ceEEEE
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL--------YELNNM-HLYYIQ 164 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~ 164 (202)
++++|||+++++||+....|+....+. ...+.|+++|+||+|+.+............. ..++.. ..++|+
T Consensus 83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~ 161 (185)
T d2atxa1 83 VFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV 161 (185)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHH-HSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred eeeeccccchHHHHHHHHHHHHHHHHh-cCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEE
Confidence 999999999999999988888877766 3558999999999999763222111100000 011122 346899
Q ss_pred EeeeecCCCHHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+|||++|.||+++|+.+++++.
T Consensus 162 E~SAk~~~gv~e~F~~li~~il 183 (185)
T d2atxa1 162 ECSALTQKGLKTVFDEAIIAIL 183 (185)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EecCCCCcCHHHHHHHHHHHHc
Confidence 9999999999999999998763
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.6e-34 Score=197.30 Aligned_cols=166 Identities=23% Similarity=0.305 Sum_probs=122.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
-+||+++|++|||||||+++|.++.+. .+.++.+.+.........+.....+.+||++|++.+...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 589999999999999999999998876 4567777666666665545667889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHcc---CCCCCCcEEEEeeCCCCCCCc---CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKN---NDNFNVPILILANKQDLPNAI---QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~pvivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
|||++++.+|..+..|+..+... ......|+++|+||+|+.+.. ...+.+.+.. ....+++++|||++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~e~SA~~g 156 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK-----SLGDIPLFLTSAKNA 156 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH-----HTTSCCEEEEBTTTT
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHH-----HcCCCeEEEEeCCCC
Confidence 99999999999988888766543 234578999999999997542 2233333221 223577999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.||+++|++|++.+.+++
T Consensus 157 ~gv~e~f~~l~~~~l~~~ 174 (175)
T d1ky3a_ 157 INVDTAFEEIARSALQQN 174 (175)
T ss_dssp BSHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcc
Confidence 999999999999887664
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-34 Score=197.66 Aligned_cols=164 Identities=20% Similarity=0.310 Sum_probs=128.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC--ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN--TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
.|...+||+++|+++||||||+++++++.+.. ..++.+.+.....+.. ++..+.+.+|||||++.+..++..+++++
T Consensus 2 ~~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~ 80 (170)
T d2g6ba1 2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDA 80 (170)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGC
T ss_pred CCceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEe-cCcEEEEEEEECCCchhhHHHHHHhhcCC
Confidence 36678999999999999999999999988753 3555677777766655 56678999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
|++++|||+++++++..+..|+...... .....|+++|+||+|+..... .++..... ...++++++|||++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~------~~~~~~~~e~Sak~ 153 (170)
T d2g6ba1 81 HALLLLYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKLA------KEYGLPFMETSAKT 153 (170)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECCSTTSCCCSCHHHHHHHH------HHHTCCEEECCTTT
T ss_pred ceeEEEecCCcccchhhhhhhhhhhhhc-cCCCceEEEEEeeechhhcccccHHHHHHHH------HHcCCEEEEEeCCC
Confidence 9999999999999999999988877665 355789999999999976533 33333332 34567899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLIL 186 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~ 186 (202)
|.||+++|++|++.+.
T Consensus 154 g~gi~e~f~~l~~~i~ 169 (170)
T d2g6ba1 154 GLNVDLAFTAIAKELK 169 (170)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcC
Confidence 9999999999998765
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.3e-34 Score=196.22 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=129.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCc-hhhHHhhhcCCCE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL-RPLWKSYTRCTDG 94 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-~~~~~~~~~~~d~ 94 (202)
..+||+++|++|||||||+++|.+..+. ...++.+.......+.. ++..+.+.+||+++.... ..++..+++++|+
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~ 80 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGDA 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeecc-CCceeeeeeeccccccccccccccccccccce
Confidence 4689999999999999999999987653 44566676666665555 567788999998864322 2256778999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++.+.. +...++++++|||++|.
T Consensus 81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~------a~~~~~~~~e~Sak~g~ 154 (172)
T d2g3ya1 81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC------AVVFDCKFIETSAAVQH 154 (172)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHH------HHHHTCEEEECBTTTTB
T ss_pred eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHH------HHHcCCeEEEEeCCCCc
Confidence 99999999999999999999888776556689999999999997643 33333332 23456789999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
||+++|+.|++.+..++
T Consensus 155 ~i~~~f~~l~~~i~~rr 171 (172)
T d2g3ya1 155 NVKELFEGIVRQVRLRR 171 (172)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHcc
Confidence 99999999999887654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-34 Score=201.80 Aligned_cols=163 Identities=21% Similarity=0.257 Sum_probs=130.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.+||+++|++|||||||+++|..+.+. .+.||.+..... .... ++..+.+.+||++|++++...+..+++++|+++
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 79 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecce-eEee-CCceeeeeccccccchhhhhhhhhcccccceee
Confidence 3689999999999999999999999986 556777644333 2323 466789999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--------------HHHHHHHhCchhhcCcceEE
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--------------IKQIEKLLGLYELNNMHLYY 162 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 162 (202)
+|||+++++||+.+..|+...... ...+.|+++|+||+|+.+... .++.+.+. ....+.+
T Consensus 80 lv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 153 (191)
T d2ngra_ 80 VCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLA-----RDLKAVK 153 (191)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHH-HCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHTTCSC
T ss_pred cccccchHHHHHHHHHHHHHHHhh-cCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHH-----HHcCCCe
Confidence 999999999999998888777665 356899999999999865422 12222211 1224568
Q ss_pred EEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 163 IQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 163 ~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+++|||++|.||+++|+.+++.+.+.
T Consensus 154 ~~e~SAk~~~~V~e~f~~l~~~~~~~ 179 (191)
T d2ngra_ 154 YVECSALTQKGLKNVFDEAILAALEP 179 (191)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999877544
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-33 Score=195.09 Aligned_cols=166 Identities=24% Similarity=0.353 Sum_probs=137.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+++|++|||||||+++|.++.+. .+.++.+.......+.. +...+.+.+||+||++++..++..++..+|++
T Consensus 5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~i 83 (177)
T d1x3sa1 5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 83 (177)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEE-eccccEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 35789999999999999999999998886 44566666555555444 56778999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
|+|||++++.++..+..|+..+.........|+++++||.|.... ....+...+. ...++++++|||++|+|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~------~~~~~~~~e~Sa~tg~gv 157 (177)
T d1x3sa1 84 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA------RKHSMLFIEASAKTCDGV 157 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH------HHTTCEEEECCTTTCTTH
T ss_pred EEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHH------HHCCCEEEEEeCCCCCCH
Confidence 999999999999999999998877656668999999999998654 3333444432 345678999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKKR 189 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~ 189 (202)
+++|+++++.+.+.+
T Consensus 158 ~e~f~~l~~~l~~~p 172 (177)
T d1x3sa1 158 QCAFEELVEKIIQTP 172 (177)
T ss_dssp HHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHccCc
Confidence 999999999988654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.1e-34 Score=195.26 Aligned_cols=161 Identities=27% Similarity=0.371 Sum_probs=131.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
-+||+++|++|||||||+++|+.+.+. .+.+|.+.++....+.. .+..+.+.+||+||++.+..++..+++++|++|+
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 80 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 589999999999999999999998876 55788888777777766 6778899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
|||++++++++.+..|+...... .....|++++++|.|+..... .++..... ...++++++|||++|+|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~e 153 (166)
T d1g16a_ 81 VYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALA------KELGIPFIESSAKNDDNVNE 153 (166)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHH------HHHTCCEEECBTTTTBSHHH
T ss_pred EEECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHH------HhcCCeEEEECCCCCCCHHH
Confidence 99999999999988887776665 456789999999999876543 33333332 34568999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 177 GINELYQLILK 187 (202)
Q Consensus 177 l~~~l~~~~~~ 187 (202)
+|++|++.+.+
T Consensus 154 ~f~~l~~~i~~ 164 (166)
T d1g16a_ 154 IFFTLAKLIQE 164 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998864
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-34 Score=198.09 Aligned_cols=160 Identities=24% Similarity=0.349 Sum_probs=133.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+++|++|||||||+++|+++.+. .+.|+.+.++....+.. .+..+.+.+||++|++.+...++.++..+|++|
T Consensus 2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i 80 (170)
T d1ek0a_ 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPMYYRNAQAAL 80 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeecccccc-ccccccccccccCCchhHHHHHHHHHhccceEE
Confidence 3689999999999999999999999886 56788887776666654 567899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-----cCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-----IQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+|||++++.++..+..|+...... .....|+++|+||+|+.+. ....+.++.. ...++++++|||++|
T Consensus 81 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~------~~~~~~~~e~Sak~g 153 (170)
T d1ek0a_ 81 VVYDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLA------EEKGLLFFETSAKTG 153 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH------HHHTCEEEECCTTTC
T ss_pred EEEeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHH------HHcCCEEEEecCCCC
Confidence 999999999999999888776655 4558899999999998543 2333343332 345679999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLI 185 (202)
Q Consensus 172 ~~v~~l~~~l~~~~ 185 (202)
.||+++|+.|++.+
T Consensus 154 ~gV~e~F~~i~~~i 167 (170)
T d1ek0a_ 154 ENVNDVFLGIGEKI 167 (170)
T ss_dssp TTHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999987654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-34 Score=198.73 Aligned_cols=168 Identities=21% Similarity=0.282 Sum_probs=130.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.+||+|+|++|||||||+++|+.+.+. .+.+|.+... ...... ++..+.+.+||++|++.+...+..+++++|+
T Consensus 2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~-~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 79 (183)
T d1mh1a_ 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 79 (183)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeece-eeeeec-cCcceEEEeecccccccchhhhhhcccccce
Confidence 457899999999999999999999999876 4567766333 233323 5678899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc--------hhhc-CcceEEEEE
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL--------YELN-NMHLYYIQA 165 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~ 165 (202)
+++|||++++++|+.+..|+...... ...+.|+++|+||+|+..+............ ..++ ....++|++
T Consensus 80 ~ilv~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E 158 (183)
T d1mh1a_ 80 SLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 158 (183)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred eeeeeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEE
Confidence 99999999999999998777766665 3558999999999998654322111110000 0111 123478999
Q ss_pred eeeecCCCHHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
|||++|.||+++|+.|++.+.
T Consensus 159 ~SAk~~~~V~e~F~~l~~~il 179 (183)
T d1mh1a_ 159 CSALTQRGLKTVFDEAIRAVL 179 (183)
T ss_dssp CCTTTCTTHHHHHHHHHHHHS
T ss_pred cCCCCCcCHHHHHHHHHHHHc
Confidence 999999999999999998764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.8e-33 Score=195.65 Aligned_cols=168 Identities=20% Similarity=0.253 Sum_probs=137.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
-+||+|+|.+|||||||+++|+++.+. .+.||.+.+........ .+..+.+.+||++|+..+...+..++..+|++++
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 80 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL 80 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeee-CCceEEEEeeecCCcccccccccccccCccEEEE
Confidence 379999999999999999999998876 55788888887777766 5677899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccC---CCCCCcEEEEeeCCCCCCCcCHH-HHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNN---DNFNVPILILANKQDLPNAIQIK-QIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|||.+++.++..+..|+..+.... ...+.|+++|+||+|+.+..... ...... ....++++++|||++|.|
T Consensus 81 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sak~~~g 155 (184)
T d1vg8a_ 81 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC-----YSKNNIPYFETSAKEAIN 155 (184)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH-----HHTTSCCEEECBTTTTBS
T ss_pred eecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHH-----HHhcCCeEEEEcCCCCcC
Confidence 999999999999988886665432 23468999999999997654333 333322 134578899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy1315 174 LHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~~~~ 192 (202)
|+++|++|++.+.+++.+.
T Consensus 156 I~e~f~~l~~~i~~~~~~~ 174 (184)
T d1vg8a_ 156 VEQAFQTIARNALKQETEV 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 9999999999887765543
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-32 Score=188.32 Aligned_cols=164 Identities=20% Similarity=0.310 Sum_probs=131.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+.+||+|+|++|||||||++++.++.+. .+.++.+.......... .+..+.+.+||++|.......+..++..+|++
T Consensus 4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 82 (174)
T d1wmsa_ 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 82 (174)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeee-cCceeeEeeecccCcceehhhhhhhhhccceE
Confidence 45679999999999999999999998886 55677776666655544 56678999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHc---cCCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIK---NNDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~---~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|||.+++.++..+..|+..+.. .....+.|+++|+||+|+.+. ...++.+.+.+ ....+++++|||++|
T Consensus 83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~-----~~~~~~~~e~Sak~~ 157 (174)
T d1wmsa_ 83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR-----DNGDYPYFETSAKDA 157 (174)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH-----HTTCCCEEECCTTTC
T ss_pred EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH-----HcCCCeEEEEcCCCC
Confidence 999999999999998888765543 233457899999999999653 34445554432 234578999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLIL 186 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~ 186 (202)
.||+++|++|++.+.
T Consensus 158 ~gI~e~f~~l~~~il 172 (174)
T d1wmsa_ 158 TNVAAAFEEAVRRVL 172 (174)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998875
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-32 Score=188.79 Aligned_cols=163 Identities=17% Similarity=0.196 Sum_probs=126.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.+||+++|++|||||||++++++..+....++.+..+. ..+.+ ++..+.+.+||++|++.+ .+++.+|++|+
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~-~~i~v-~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il 76 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLV-DGQTHLVLIREEAGAPDA-----KFSGWADAVIF 76 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEE-EEEEE-TTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEE-EEeec-CceEEEEEEeeccccccc-----ccccccceeEE
Confidence 479999999999999999999999998776666655443 33333 677899999999998764 46788999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHc--cCCCCCCcEEEEeeCCCCCCCc----CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 98 VIDSTDVERMEEVKIELIKTIK--NNDNFNVPILILANKQDLPNAI----QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~pvivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
|||+++++||+.+..|...+.. .......|+++|+||.|+.... ...+.+... ....+++|++|||++|
T Consensus 77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~-----~~~~~~~~~e~SAk~~ 151 (175)
T d2bmja1 77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALC-----ADMKRCSYYETCATYG 151 (175)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHH-----HTSTTEEEEEEBTTTT
T ss_pred EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHH-----HHhCCCeEEEeCCCCC
Confidence 9999999999999888776643 2234578999999998875432 222333321 2346789999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhh
Q psy1315 172 DGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~~~ 192 (202)
.|++++|..+++.+...+++.
T Consensus 152 ~~v~~~F~~l~~~i~~~~~~~ 172 (175)
T d2bmja1 152 LNVDRVFQEVAQKVVTLRKQQ 172 (175)
T ss_dssp BTHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhhhc
Confidence 999999999999988777543
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-32 Score=191.81 Aligned_cols=161 Identities=19% Similarity=0.221 Sum_probs=127.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
..||+++|++|||||||++++..+.++ .+.||.+.. ....... ++..+.+.+||++|++.+...++.+++.+|++|+
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~-~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~il 79 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 79 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeec-ccccccc-cceEEeeccccccccccccccccchhhhhhhhhe
Confidence 469999999999999999999999987 446665533 3333333 6778999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--------------CHHHHHHHhCchhhcCcceEEE
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--------------QIKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 163 (202)
|||+++++||+.+..||...... ...+.|+++||||+|+.... ..++.....+ .....+|
T Consensus 80 v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~-----~~~~~~y 153 (179)
T d1m7ba_ 80 CFDISRPETLDSVLKKWKGEIQE-FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK-----QIGAATY 153 (179)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH-HCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH-----HHTCSEE
T ss_pred eeecccCCCHHHHHHHHHHHHhc-cCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHH-----HhCCCeE
Confidence 99999999999999888777655 34589999999999986432 1122222111 1234689
Q ss_pred EEeeeecCCC-HHHHHHHHHHHHHH
Q psy1315 164 QATCAITGDG-LHEGINELYQLILK 187 (202)
Q Consensus 164 ~~~Sa~~~~~-v~~l~~~l~~~~~~ 187 (202)
++|||++|.| ++++|+.+++.+.+
T Consensus 154 ~E~SAk~~~n~i~~~F~~~~~~~l~ 178 (179)
T d1m7ba_ 154 IECSALQSENSVRDIFHVATLACVN 178 (179)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHhc
Confidence 9999999984 99999999988764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=100.00 E-value=2.4e-31 Score=181.38 Aligned_cols=160 Identities=49% Similarity=0.875 Sum_probs=134.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
+||+++|++|||||||+++|.++++....++........ +...+.+.+||++|...+...+..++..++++++||
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 75 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV-----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEE-----ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEE-----eeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence 689999999999999999999988765554444333322 456788999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
|++++.++.....++............|+++++||.|+.+.....++....... .....++++++|||++|+|++++|+
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~SAktg~gi~e~~~ 154 (160)
T d1r8sa_ 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-SLRHRNWYIQATCATSGDGLYEGLD 154 (160)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG-GCSSCCEEEEECBTTTTBTHHHHHH
T ss_pred EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHH-HHhhCCCEEEEeECCCCCCHHHHHH
Confidence 999999999999999888877666789999999999998877776666655433 3355678999999999999999999
Q ss_pred HHHHHH
Q psy1315 180 ELYQLI 185 (202)
Q Consensus 180 ~l~~~~ 185 (202)
+|.+++
T Consensus 155 ~l~~~l 160 (160)
T d1r8sa_ 155 WLSNQL 160 (160)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 998763
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.1e-32 Score=187.88 Aligned_cols=157 Identities=24% Similarity=0.378 Sum_probs=127.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchh-hHHhhhcCCCEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP-LWKSYTRCTDGI 95 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~d~~ 95 (202)
+.+||+++|++|||||||+++|.++.+. ...++.+.......... ......+.+||++|...... .++.+++++|++
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 79 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 79 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeee-eccceEEEEEeccCchhhccccceeeecCCCce
Confidence 3589999999999999999999998876 45666666665555544 56778899999999776654 578899999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeec---
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAIT--- 170 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--- 170 (202)
|+|||++++++|+.+..|+..+.......+.|++||+||+|+.+. ...++.+.+ +...++++++|||++
T Consensus 80 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~------~~~~~~~~~e~SAkt~~~ 153 (165)
T d1z06a1 80 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF------ADTHSMPLFETSAKNPND 153 (165)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHH------HHHTTCCEEECCSSSGGG
T ss_pred EEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHH------HHHCCCEEEEEecccCCc
Confidence 999999999999999999998877666678999999999999764 334444443 234567899999986
Q ss_pred CCCHHHHHHHH
Q psy1315 171 GDGLHEGINEL 181 (202)
Q Consensus 171 ~~~v~~l~~~l 181 (202)
++||+++|++|
T Consensus 154 ~~~V~e~F~~l 164 (165)
T d1z06a1 154 NDHVEAIFMTL 164 (165)
T ss_dssp GSCHHHHHHHH
T ss_pred CcCHHHHHHHh
Confidence 56999999986
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.97 E-value=1.8e-30 Score=179.98 Aligned_cols=175 Identities=37% Similarity=0.657 Sum_probs=140.1
Q ss_pred CcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 2 GKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 2 g~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
|...+.+| ++ -.++.+||+|+|.+|||||||++++.+.++....++.+....... ...+.+.+||+++.+..
T Consensus 1 ~~~~~~~~-~~--~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~ 72 (177)
T d1zj6a1 1 GILFTRIW-RL--FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV-----INNTRFLMWDIGGQESL 72 (177)
T ss_dssp CHHHHHHH-HH--HTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEE-----ETTEEEEEEECCC----
T ss_pred ChhHHHHH-HH--hCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEe-----ecceEEEEecccccccc
Confidence 34556665 22 236679999999999999999999999998877777766555543 35678999999999999
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
...+..++..++++++++|.++..++.....++............|+++|+||+|+.......+....+..... ...++
T Consensus 73 ~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~-~~~~~ 151 (177)
T d1zj6a1 73 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI-KDHQW 151 (177)
T ss_dssp CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC-CSSCE
T ss_pred ccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhh-HhcCC
Confidence 99999999999999999999999999888777766666555669999999999999888777777776654433 45678
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
++++|||++|+|+++++++|.+.+
T Consensus 152 ~~~~~Sa~tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 152 HIQACCALTGEGLCQGLEWMMSRL 175 (177)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999875
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.97 E-value=9.9e-29 Score=169.62 Aligned_cols=166 Identities=37% Similarity=0.660 Sum_probs=139.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
.+.+||+++|++|||||||++++.++.+..+.++.+....... ...+.+.+||.+|..........+....++++
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVT-----YKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 77 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEE-----ETTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeec-----cCceEEEEeeccccccccccchhhhhhhhhhh
Confidence 4679999999999999999999999998877777765554443 45778999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+++|+.+..++.....++............|+++|+||.|+.......++....... +....++++++|||++|.||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~-~~~~~~~~~~~~SA~~g~gv~e 156 (169)
T d1upta_ 78 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLP-ALKDRKWQIFKTSATKGTGLDE 156 (169)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGG-GCTTSCEEEEECCTTTCTTHHH
T ss_pred hhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHH-HHhcCCCEEEEEeCCCCCCHHH
Confidence 999999988888888877777666566689999999999999887776666655432 3345678999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 177 GINELYQLILKK 188 (202)
Q Consensus 177 l~~~l~~~~~~~ 188 (202)
+|++|++.+.++
T Consensus 157 ~~~~l~~~l~~k 168 (169)
T d1upta_ 157 AMEWLVETLKSR 168 (169)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999987543
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2e-28 Score=167.32 Aligned_cols=158 Identities=34% Similarity=0.517 Sum_probs=134.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
||+++|++|||||||+++|.+..+..+.|+.+.+...... ......+||++|...+...+..+...++++++++|
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 76 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAI-----GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 76 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECC-----TTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEecc-----CCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence 7999999999999999999999988888888877776654 45678999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhh------cCcceEEEEEeeeecCCCH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYEL------NNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v 174 (202)
.++..++.....++..........+.|+++++||.|+.......++...+..... .....+++++|||++|+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv 156 (166)
T d2qtvb1 77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 156 (166)
T ss_dssp TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSH
T ss_pred ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCH
Confidence 9999999998888888887777779999999999999887666666555433221 2345678999999999999
Q ss_pred HHHHHHHHH
Q psy1315 175 HEGINELYQ 183 (202)
Q Consensus 175 ~~l~~~l~~ 183 (202)
+|+|+||.+
T Consensus 157 ~e~~~~l~~ 165 (166)
T d2qtvb1 157 LEAFQWLSQ 165 (166)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 999999864
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.96 E-value=1.1e-27 Score=166.84 Aligned_cols=166 Identities=36% Similarity=0.548 Sum_probs=128.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..++..||+++|++|||||||+++|.+..+....++.+.+...+.+ ....+.+||+++...+...+..+....++
T Consensus 9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (186)
T d1f6ba_ 9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI-----AGMTFTTFDLGGHIQARRVWKNYLPAING 83 (186)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEE-----TTEEEEEEEECC----CCGGGGGGGGCSE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEe-----cccccccccccchhhhhhHHhhhhcccce
Confidence 4577899999999999999999999999888777887777766654 34678899999999888899999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc-----------CcceEEE
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN-----------NMHLYYI 163 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 163 (202)
+++++|+.+...+......+..........+.|+++++||.|+........+...+...... ...++++
T Consensus 84 ~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (186)
T d1f6ba_ 84 IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 163 (186)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred eeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence 99999999999998887777666665556689999999999998877766666555432221 2346789
Q ss_pred EEeeeecCCCHHHHHHHHHHHH
Q psy1315 164 QATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
++|||++|+|++|+|+||.+++
T Consensus 164 ~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 164 FMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEeCCCCCCHHHHHHHHHHhh
Confidence 9999999999999999998753
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=1.5e-27 Score=168.15 Aligned_cols=166 Identities=22% Similarity=0.346 Sum_probs=127.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.+||+++|+.|||||||+++|....+ .+.||.|+....+. ...+.+.+||++|++.+...+..+++.++++++
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~~~~-----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 74 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFD-----LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF 74 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEEEEE-----CSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEEEEe-----ccceeeeeccccccccccccccccccccceeeE
Confidence 468999999999999999999988877 46799998766554 466789999999999999999999999999999
Q ss_pred EEeCCCch----------hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC------------------cCHHHHHH-
Q psy1315 98 VIDSTDVE----------RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA------------------IQIKQIEK- 148 (202)
Q Consensus 98 v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~------------------~~~~~~~~- 148 (202)
|+|.++.. .+......|..++......+.|+++++||+|+... ........
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (200)
T d2bcjq2 75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF 154 (200)
T ss_dssp EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence 99998753 23444555666655545678999999999997421 11111111
Q ss_pred ----HhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 149 ----LLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 149 ----~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+.+. .......+.+++|||+++.||+++|+.|.+.+.+.+.
T Consensus 155 i~~~f~~~-~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~nl 199 (200)
T d2bcjq2 155 ILKMFVDL-NPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 199 (200)
T ss_dssp HHHHHHTT-CSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-cccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHhc
Confidence 1121 1123456888999999999999999999998886653
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=4.1e-27 Score=163.22 Aligned_cols=158 Identities=17% Similarity=0.124 Sum_probs=108.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc--------hhhHHhhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL--------RPLWKSYTR 90 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~ 90 (202)
.-.|+|+|.+|||||||+++|++.......+..+++........ ......+.+|||||.... ......++.
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~-~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 83 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL-TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 83 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE-EETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCccccccccee-eeeeeeeeecccccccccccccchhcccccccccc
Confidence 34799999999999999999998876544444444443333222 345678999999996443 223345578
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
++|++|+|+|++++... ...++...++. ...+.|+++|+||+|+..... +....... ......++++||++
T Consensus 84 ~ad~il~v~D~~~~~~~--~~~~i~~~l~~-~~~~~piilv~NK~Dl~~~~~--~~~~~~~~----~~~~~~~~~iSA~~ 154 (178)
T d1wf3a1 84 DVNAVVWVVDLRHPPTP--EDELVARALKP-LVGKVPILLVGNKLDAAKYPE--EAMKAYHE----LLPEAEPRMLSALD 154 (178)
T ss_dssp SCSEEEEEEETTSCCCH--HHHHHHHHHGG-GTTTSCEEEEEECGGGCSSHH--HHHHHHHH----TSTTSEEEECCTTC
T ss_pred cccceeeeechhhhhcc--cccchhhheec-cccchhhhhhhcccccccCHH--HHHHHHHh----hcccCceEEEecCC
Confidence 89999999999865443 23444444444 234789999999999966422 22221110 12234678899999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLIL 186 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~ 186 (202)
|.|+++++++|.+.+.
T Consensus 155 ~~gi~~L~~~i~~~lp 170 (178)
T d1wf3a1 155 ERQVAELKADLLALMP 170 (178)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999999987653
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=4.1e-27 Score=165.20 Aligned_cols=162 Identities=22% Similarity=0.328 Sum_probs=120.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.+||+++|+.|||||||+++|....++ +.++....+ ....+.+++||++|++.+...+..+++.++++++
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~~----t~~~~~~~~-----~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~ 71 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHEA----GTGIVETHF-----TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 71 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHSC----CCSEEEEEE-----EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC----CccEEEEEE-----EeeeeeeeeeccccccccccchhhcccCCceeee
Confidence 4689999999999999999999876543 444433322 4567899999999999999999999999999999
Q ss_pred EEeCCCchhH----------HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC-----------------CcCHHHH----
Q psy1315 98 VIDSTDVERM----------EEVKIELIKTIKNNDNFNVPILILANKQDLPN-----------------AIQIKQI---- 146 (202)
Q Consensus 98 v~d~~~~~s~----------~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-----------------~~~~~~~---- 146 (202)
|+|+++.+++ .....++..+.........|+++++||+|+.. .......
T Consensus 72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
T d1svsa1 72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI 151 (195)
T ss_dssp EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence 9999887654 33445566666655666899999999998632 1111111
Q ss_pred -HHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 147 -EKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
..+...........+++++|||+++.||+++|+.+.+.+.++
T Consensus 152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 122222222234578899999999999999999999887654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=8.7e-27 Score=158.94 Aligned_cols=151 Identities=20% Similarity=0.241 Sum_probs=109.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch--------hhHHhhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--------PLWKSYTRC 91 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~~ 91 (202)
+||+++|.+|||||||+|+|++..........+.+........ ......+.++|+||..+.. .....++..
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHI-HIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEE-EETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeee-eccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 7999999999999999999998876544444444444333333 4556789999999954322 224455788
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+|++++++|..+..++.....|...+.. ...+.|+++|+||+|+..... ........+++++||++|
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~iilv~NK~Dl~~~~~-----------~~~~~~~~~~~~iSAk~~ 147 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFIAR--LPAKLPITVVRNKADITGETL-----------GMSEVNGHALIRLSARTG 147 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHH--SCTTCCEEEEEECHHHHCCCC-----------EEEEETTEEEEECCTTTC
T ss_pred ccccceeeccccccchhhhhhhhhhhhh--cccccceeeccchhhhhhhHH-----------HHHHhCCCcEEEEECCCC
Confidence 9999999999987776665544333332 234799999999999855321 122345678999999999
Q ss_pred CCHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQL 184 (202)
Q Consensus 172 ~~v~~l~~~l~~~ 184 (202)
.|+++++++|.+.
T Consensus 148 ~gi~~L~~~l~~~ 160 (161)
T d2gj8a1 148 EGVDVLRNHLKQS 160 (161)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999875
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1e-25 Score=153.39 Aligned_cols=150 Identities=26% Similarity=0.329 Sum_probs=108.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC--------Cc-hhhHHhhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE--------KL-RPLWKSYTR 90 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~-~~~~~~~~~ 90 (202)
+||+++|.+|||||||+|+|++.......+..+.+........ ......+.+||+||.. .. .......+.
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 79 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEI-VIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 79 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEE-EETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEE-EeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence 6899999999999999999998776555555454444433333 4566789999999932 11 122344567
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
++|++++|+|++++........+ .. . ...++++++||.|+.+......+...+. ...+++++||++
T Consensus 80 ~ad~ii~v~d~~~~~~~~~~~~~-~~-~-----~~~~~i~~~~k~d~~~~~~~~~~~~~~~-------~~~~~~~vSA~~ 145 (160)
T d1xzpa2 80 KADIVLFVLDASSPLDEEDRKIL-ER-I-----KNKRYLVVINKVDVVEKINEEEIKNKLG-------TDRHMVKISALK 145 (160)
T ss_dssp HCSEEEEEEETTSCCCHHHHHHH-HH-H-----TTSSEEEEEEECSSCCCCCHHHHHHHHT-------CSTTEEEEEGGG
T ss_pred hCCEEEEEEeCCCCcchhhhhhh-hh-c-----ccccceeeeeeccccchhhhHHHHHHhC-------CCCcEEEEECCC
Confidence 89999999999987665543322 11 1 2578999999999988777666665443 234689999999
Q ss_pred CCCHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQL 184 (202)
Q Consensus 171 ~~~v~~l~~~l~~~ 184 (202)
|+|+++|+++|.+.
T Consensus 146 g~gi~~L~~~I~ke 159 (160)
T d1xzpa2 146 GEGLEKLEESIYRE 159 (160)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhc
Confidence 99999999998653
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=1.5e-25 Score=155.53 Aligned_cols=159 Identities=19% Similarity=0.173 Sum_probs=104.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC-------CchhhHHhhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-------KLRPLWKSYTRCTD 93 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-------~~~~~~~~~~~~~d 93 (202)
.|+++|.+|||||||+|+|++............+........ ......+.+|||||.. .........+..++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE-VSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 81 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEE-CSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceee-ecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence 489999999999999999998765322211111112221111 3455678999999932 22233445678899
Q ss_pred EEEEEEeCCCch--hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVE--RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++++++|..... .......++..... ...++|+++|+||+|+..........+.+. ..+.+++++||++|
T Consensus 82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~------~~~~~~~~iSA~tg 153 (180)
T d1udxa2 82 VLLYVLDAADEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEEEAVKALADALA------REGLAVLPVSALTG 153 (180)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCHHHHHHHHHHHH------TTTSCEEECCTTTC
T ss_pred hhhhhcccccccccchhhhhhhhhcccc--ccchhhhhhhhhhhhhhhHHHHHHHHHHHH------hcCCeEEEEEcCCC
Confidence 999999986532 22222333322111 122579999999999987655554444332 34668999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKK 188 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~ 188 (202)
.|++++++.|.+.+...
T Consensus 154 ~gid~L~~~i~~~l~~~ 170 (180)
T d1udxa2 154 AGLPALKEALHALVRST 170 (180)
T ss_dssp TTHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999998888644
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=4.7e-26 Score=160.48 Aligned_cols=166 Identities=25% Similarity=0.379 Sum_probs=117.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.+||+++|++|||||||+++|.. ...+.||.|+....+. .+.+.+.+||++|++.+...+..+++.++++++
T Consensus 1 r~iKivllG~~~vGKTsll~r~~f--~~~~~pTiG~~~~~~~-----~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~ 73 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMRI--IHGQDPTKGIHEYDFE-----IKNVPFKMVDVGGQRSERKRWFECFDSVTSILF 73 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHSCCCCSSEEEEEEE-----ETTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHhc--CCCCCCeeeeEEEEEe-----eeeeeeeeecccceeeecccccccccccceeEE
Confidence 368999999999999999999932 1356789997665543 467889999999999999999999999999999
Q ss_pred EEeCCCc----------hhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC------------------cCHHHHHHH
Q psy1315 98 VIDSTDV----------ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA------------------IQIKQIEKL 149 (202)
Q Consensus 98 v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~------------------~~~~~~~~~ 149 (202)
++|.++. ..+.....++..+.......+.|+++++||+|+... ........+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (200)
T d1zcba2 74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF 153 (200)
T ss_dssp EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence 9999874 345566667777777666779999999999997431 111222221
Q ss_pred h-----CchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 150 L-----GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 150 ~-----~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+ ..........+..++|||+++.||+++|+.+.+.+.+.+.
T Consensus 154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~l 199 (200)
T d1zcba2 154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 199 (200)
T ss_dssp HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHhc
Confidence 1 1111112345667789999999999999999998876653
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.4e-25 Score=154.34 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=99.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC---------chhhHHhhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---------LRPLWKSYTRC 91 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~~ 91 (202)
+|+++|.+|||||||+++|++.....+....+.+........ ......+.+||++|... +......++..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTV-EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 80 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEE-EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccc-cccccccccccccceeeeecccccccccccccccccc
Confidence 699999999999999999998776544555555544444333 45677899999999321 22344555788
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+|+++++.+.++...... ..++..+... ++|+++|+||+|+..+.......... ......++++||++|
T Consensus 81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~~----~~pviiv~NK~Dl~~~~~~~~~~~~~------~~~~~~~i~iSAk~g 149 (171)
T d1mkya1 81 ADLVLFVVDGKRGITKED-ESLADFLRKS----TVDTILVANKAENLREFEREVKPELY------SLGFGEPIPVSAEHN 149 (171)
T ss_dssp CSEEEEEEETTTCCCHHH-HHHHHHHHHH----TCCEEEEEESCCSHHHHHHHTHHHHG------GGSSCSCEECBTTTT
T ss_pred CcEEEEeecccccccccc-cccccccccc----cccccccchhhhhhhhhhhHHHHHHH------hcCCCCeEEEecCCC
Confidence 999999999876544332 2233333333 68999999999987543222222221 122335688999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|+++++++|.+.+.+..
T Consensus 150 ~gid~L~~~i~~~l~e~~ 167 (171)
T d1mkya1 150 INLDTMLETIIKKLEEKG 167 (171)
T ss_dssp BSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 999999999999876543
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.93 E-value=2e-25 Score=154.62 Aligned_cols=164 Identities=19% Similarity=0.179 Sum_probs=110.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCc------cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNT------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
+.++|+++|++++|||||+|+|++...... ....+.+........ ......+.++|+||+..+.......+..
T Consensus 4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~l~~ 82 (179)
T d1wb1a4 4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAF-KLENYRITLVDAPGHADLIRAVVSAADI 82 (179)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEE-EETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccc-ccCCccccccccccccccccchhhhhhh
Confidence 578999999999999999999986543211 112233332222222 3456789999999999888888899999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc--hhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL--YELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~ 169 (202)
+|++++|+|+.+...... ...+..+... ++|+++|+||+|+............... .........+++++||+
T Consensus 83 ~d~~ilv~d~~~g~~~~~-~~~~~~~~~~----~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~ 157 (179)
T d1wb1a4 83 IDLALIVVDAKEGPKTQT-GEHMLILDHF----NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 157 (179)
T ss_dssp CCEEEEEEETTTCSCHHH-HHHHHHHHHT----TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred ccccccccccccccchhh-hhhhhhhhhc----CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence 999999999987543332 2233333332 7899999999999876443322221111 11113456789999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILK 187 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~ 187 (202)
+|+|++++++.|.+.+.+
T Consensus 158 ~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 158 TGFGVDELKNLIITTLNN 175 (179)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcCCc
Confidence 999999999999987764
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=6.2e-25 Score=153.07 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=108.2
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC------------C
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE------------K 80 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~------------~ 80 (202)
+|..+..++|+++|++|||||||+|+|++..........+.+........ ......+.++|+||.. .
T Consensus 2 ~p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 80 (186)
T d1mkya2 2 KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEV-FIDGRKYVFVDTAGLRRKSRVEPRTVEKY 80 (186)
T ss_dssp CCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEE-EETTEEEEESSCSCC-----------CCS
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeee-ccCCceeeeeccCCccccccccccccccc
Confidence 45667789999999999999999999998765433333233322222212 2345567888999843 2
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCc
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNM 158 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~ 158 (202)
.......+++.+|++++|+|++.+..-.. ..+...+... +.|+|+|+||+|+..... ..++...+... ....
T Consensus 81 ~~~~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~~----~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~ 154 (186)
T d1mkya2 81 SNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMERR----GRASVVVFNKWDLVVHREKRYDEFTKLFREK-LYFI 154 (186)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHT----TCEEEEEEECGGGSTTGGGCHHHHHHHHHHH-CGGG
T ss_pred hhHHHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHHc----CCceeeeccchhhhcchhhhhhhHHHHHHHH-hccc
Confidence 33445566788999999999985433221 2222233332 789999999999865432 23333322211 1123
Q ss_pred ceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 159 HLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 159 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
...+++++||++|.|+++|++.|.+.+..+
T Consensus 155 ~~~~i~~vSa~~g~gv~~L~~~i~~~~~~~ 184 (186)
T d1mkya2 155 DYSPLIFTSADKGWNIDRMIDAMNLAYASY 184 (186)
T ss_dssp TTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 345789999999999999999998776654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.92 E-value=7.8e-25 Score=152.23 Aligned_cols=157 Identities=18% Similarity=0.270 Sum_probs=101.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC---------------chhhH
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---------------LRPLW 85 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------------~~~~~ 85 (202)
.|+++|.+|||||||+|+|++.+.. ..+..++|.....+. .. .+.++||||... +....
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~~~~---~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~ 75 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIE---WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 75 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEE---ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeecccccc---cc--cceecccCCceeccccccccccccchhhhhhh
Confidence 5899999999999999999987653 445556665555442 22 367899999311 12223
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHH---------HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchh
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVK---------IELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYE 154 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~---------~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~ 154 (202)
...++.+|++++|+|........... ..+...... .+.|+++|+||+|+...... ......+.. .
T Consensus 76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~ 151 (184)
T d2cxxa1 76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-P 151 (184)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-C
T ss_pred hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-c
Confidence 44567899999999987432221111 111222222 27899999999998754221 112222211 1
Q ss_pred hcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 155 LNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+ ......++++||++|.|+++++++|.+.+.++
T Consensus 152 ~-~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 152 L-SEIDKVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp G-GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred c-cccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence 1 22344578999999999999999999988753
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=2.1e-23 Score=147.61 Aligned_cols=161 Identities=25% Similarity=0.310 Sum_probs=114.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch-hhHHhhhcCCCEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-PLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~d~~ilv~ 99 (202)
+|+++|++|||||||+++|+++.+....++.+.+.....+. ....+.+.+||++|++.+. ..+..++..++++++|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~ 79 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN--NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV 79 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS--STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEe--eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence 69999999999999999999998887778888777766653 3567889999999998775 56788889999999999
Q ss_pred eCCCchhH-HHHHHHHHHHHcc--CCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCch-----------------------
Q psy1315 100 DSTDVERM-EEVKIELIKTIKN--NDNFNVPILILANKQDLPNAIQIKQIEKLLGLY----------------------- 153 (202)
Q Consensus 100 d~~~~~s~-~~~~~~~~~~~~~--~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~----------------------- 153 (202)
|+++..++ .....++..++.. ......|++||+||+|+.......++...+...
T Consensus 80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
T d2fh5b1 80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPA 159 (207)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CC
T ss_pred EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhh
Confidence 99987654 4444444444321 123468999999999998766555443322100
Q ss_pred h---------h-cCcceEEEEEeeeecCCC------HHHHHHHHHH
Q psy1315 154 E---------L-NNMHLYYIQATCAITGDG------LHEGINELYQ 183 (202)
Q Consensus 154 ~---------~-~~~~~~~~~~~Sa~~~~~------v~~l~~~l~~ 183 (202)
. + .......++++|++++.+ ++.+-+||.+
T Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~ 205 (207)
T d2fh5b1 160 QLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 205 (207)
T ss_dssp CSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred hhcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHH
Confidence 0 0 012356799999998886 7777777654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=2.9e-24 Score=153.50 Aligned_cols=167 Identities=24% Similarity=0.382 Sum_probs=126.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
+++.+||+++|+.|||||||++++.... ..||.|+....+. .+.+.+.+||++|++.+...|..++++++++
T Consensus 3 ~k~~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~-----~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~i 74 (221)
T d1azta2 3 YRATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQ-----VDKVNFHMFDVGGQRDERRKWIQCFNDVTAI 74 (221)
T ss_dssp HHHSEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEE-----ETTEEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred chhcCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEE-----ECcEEEEEEecCccceeccchhhhcccccce
Confidence 4568999999999999999999997654 3578887665554 3568899999999999999999999999999
Q ss_pred EEEEeCCCc----------hhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc------CH----------------
Q psy1315 96 IFVIDSTDV----------ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI------QI---------------- 143 (202)
Q Consensus 96 ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~------~~---------------- 143 (202)
++|+|.++. .++......+..++......+.|++|++||+|+.+.. ..
T Consensus 75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~ 154 (221)
T d1azta2 75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDA 154 (221)
T ss_dssp EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTC
T ss_pred EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccc
Confidence 999998753 3455566677777777667789999999999985321 10
Q ss_pred ----------HHHHH-----HhCchhh--cCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 144 ----------KQIEK-----LLGLYEL--NNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 144 ----------~~~~~-----~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
..... +...... .....+..++|||++..||+.+|+.+.+.+.+...
T Consensus 155 ~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~l 218 (221)
T d1azta2 155 TPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL 218 (221)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHHh
Confidence 01111 1111100 11244778899999999999999999988886654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=1.1e-22 Score=142.60 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=96.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCCCCC-------------c
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------------L 81 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------------~ 81 (202)
...-.+|+|+|.+|||||||+|+|++.+. ..+.+..+.+........ ...+.+.|++|... +
T Consensus 20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 95 (195)
T d1svia_ 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII----NDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE----TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc----cccceEEEEEeeccccccccccchhhhH
Confidence 33445899999999999999999998654 244444444444433322 22345567766211 1
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
.......+..+|++++++|.+++..- ....++..+... ++|+++|+||+|+.......+....+. ..+......
T Consensus 96 ~~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~----~~piivv~NK~D~~~~~~~~~~~~~~~-~~l~~~~~~ 169 (195)
T d1svia_ 96 IETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY----GIPVIVIATKADKIPKGKWDKHAKVVR-QTLNIDPED 169 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT----TCCEEEEEECGGGSCGGGHHHHHHHHH-HHHTCCTTS
T ss_pred Hhhhhccccchhhhhhhhhccccccc-cccccccccccc----cCcceechhhccccCHHHHHHHHHHHH-HHhcccCCC
Confidence 11233445667999999999754321 112233333332 789999999999976655444333222 122234567
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+++++||++|.|+++++++|.+.+
T Consensus 170 ~~~~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 170 ELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHh
Confidence 899999999999999999998876
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=4.5e-23 Score=143.43 Aligned_cols=156 Identities=22% Similarity=0.221 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCc---cccccceeeEeecccccccceEEEEEEcCCC----CCch---hhHHhhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNT---VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ----EKLR---PLWKSYTR 90 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~~~~---~~~~~~~~ 90 (202)
.|+++|.+|||||||+|+|++...... ..|...+.....+ .+...+.+|||||. .... ......+.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~----~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~ 78 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET----DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 78 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC----SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEe----cCCcEEEEecCCCcccCchHHHHHHHHHHHHHH
Confidence 689999999999999999998764311 1122222222222 23456899999993 1111 22334456
Q ss_pred CCCEEEEEEeCCCchhHHHH--HH--HHHHHHccCCCCCCcEEEEeeCCCCCCCcCH-HHHHHHhCchhhcCcceEEEEE
Q psy1315 91 CTDGIIFVIDSTDVERMEEV--KI--ELIKTIKNNDNFNVPILILANKQDLPNAIQI-KQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~--~~--~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
.++.++++++.......... .. ............++|+++|+||+|+.+.... +.+... ...+.++++
T Consensus 79 ~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~-------~~~~~~v~~ 151 (185)
T d1lnza2 79 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEK-------LTDDYPVFP 151 (185)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHH-------CCSCCCBCC
T ss_pred HhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHH-------hccCCcEEE
Confidence 68999999987644322211 11 1112222223447899999999999764321 112221 134668899
Q ss_pred eeeecCCCHHHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
+||++|.|++++++.|.+.+.+
T Consensus 152 iSA~~g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 152 ISAVTREGLRELLFEVANQLEN 173 (185)
T ss_dssp CSSCCSSTTHHHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHHHhhhh
Confidence 9999999999999999888753
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.88 E-value=7.3e-23 Score=144.52 Aligned_cols=166 Identities=15% Similarity=0.066 Sum_probs=106.7
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC---ccc-----cccceeeEeec-----------------cc----cc
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN---TVP-----TIGFNCEKVKG-----------------QI----GK 64 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~---~~~-----~~~~~~~~~~~-----------------~~----~~ 64 (202)
++.+++++|+++|+.++|||||+++|++..... ... ..+........ .. ..
T Consensus 3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (205)
T d2qn6a3 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP 82 (205)
T ss_dssp CCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC
T ss_pred CCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccc
Confidence 355778999999999999999999998632110 000 00000000000 00 01
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK 144 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~ 144 (202)
.....+.++|+||+..|.......+..+|++|+|+|+.+.-........+...... .-.|+||+.||+|+.+.....
T Consensus 83 ~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~ 159 (205)
T d2qn6a3 83 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEAL 159 (205)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHH
T ss_pred cceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHH
Confidence 12246899999999999998889999999999999998642122223333333222 135889999999998754333
Q ss_pred HH----HHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 145 QI----EKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 145 ~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
.. ...+.. ....+++++++||++|.|++++++.|...+
T Consensus 160 ~~~~~~~~~l~~---~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i 201 (205)
T d2qn6a3 160 SQYRQIKQFTKG---TWAENVPIIPVSALHKINIDSLIEGIEEYI 201 (205)
T ss_dssp HHHHHHHHHHTT---STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcc---ccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence 22 222221 123467899999999999999999887653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.88 E-value=8.8e-24 Score=151.48 Aligned_cols=160 Identities=22% Similarity=0.229 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCC-----ccccccc--------------eeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLN-----TVPTIGF--------------NCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~-----~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
-|+|+|++++|||||+++|++..... .....+. +.....+ ......+.++||||++.|
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~iDtPGh~~f 83 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSI---RETLPGLFFIDTPGHEAF 83 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGG---GGTCCEEEEECCCTTSCC
T ss_pred EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceee---cccccccccccccceecc
Confidence 39999999999999999998643210 0010010 0111111 345567899999999999
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH-----------------
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK----------------- 144 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----------------- 144 (202)
.......+..+|++|+|+|+.+.-.... ...+..+... ++|+|+|+||+|+.......
T Consensus 84 ~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~----~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (227)
T d1g7sa4 84 TTLRKRGGALADLAILIVDINEGFKPQT-QEALNILRMY----RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (227)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT----TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred cccchhcccccceEEEEEecccCcccch-hHHHHHhhcC----CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHH
Confidence 8888888899999999999985422222 2233333332 78999999999986532100
Q ss_pred -HHH----HHhC--------chhh----cCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 145 -QIE----KLLG--------LYEL----NNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 145 -~~~----~~~~--------~~~~----~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
... .... ...+ ......+++++||.+|.|+++|++.|.+...+.
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~ 219 (227)
T d1g7sa4 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (227)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 000 0000 0000 012357899999999999999999998876543
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.88 E-value=5.8e-23 Score=144.00 Aligned_cols=163 Identities=18% Similarity=0.112 Sum_probs=106.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC--Ccccccc------ceeeEee----------------cccccccceEEE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIG------FNCEKVK----------------GQIGKCKGINFL 71 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~------~~~~~~~----------------~~~~~~~~~~~~ 71 (202)
.+..++|+++|+.++|||||+++|++.... ......| +...... ..........+.
T Consensus 2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T d1kk1a3 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 81 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence 357889999999999999999999874321 1111111 1110000 000122235689
Q ss_pred EEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHH----HH
Q psy1315 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ----IE 147 (202)
Q Consensus 72 ~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~----~~ 147 (202)
++|+||+..|.......+..+|++++|+|+.+..........+...... ...+++++.||+|+.+...... +.
T Consensus 82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~ 158 (195)
T d1kk1a3 82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 158 (195)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHH
Confidence 9999999999988888889999999999998653333333333333332 1346888999999987533222 22
Q ss_pred HHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 148 KLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.++.. .....++++++||++|+|+++|++.|.+.
T Consensus 159 ~~~~~---~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~ 192 (195)
T d1kk1a3 159 EFIEG---TVAENAPIIPISALHGANIDVLVKAIEDF 192 (195)
T ss_dssp HHHTT---STTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHhcc---ccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 32221 12345789999999999999999998764
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.87 E-value=2.2e-22 Score=140.41 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=109.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC---------------CCCccccccceeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ---------------YLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
+++++|+++|+.++|||||+++|++.. ........|.|.......+ ......+.++|+||+..|
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~-~~~~~~~~~iDtPGh~~f 79 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY-STAARHYAHTDCPGHADY 79 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEE-ECSSCEEEEEECSSHHHH
T ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEE-EeceeeEEeecCcchHHH
Confidence 457999999999999999999997520 0112233355555444433 456778999999999999
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH-H----HHHHHhCchhhc
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI-K----QIEKLLGLYELN 156 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 156 (202)
.......+..+|++|+|+|+.+.-. ......+...... ...|+||+.||+|+..+... + ++...+....+
T Consensus 80 ~~~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~- 154 (196)
T d1d2ea3 80 VKNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY- 154 (196)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCC-
Confidence 9888888999999999999986432 2223333333332 14689999999999754221 1 22232221111
Q ss_pred CcceEEEEEeeeecC----------CCHHHHHHHHHHH
Q psy1315 157 NMHLYYIQATCAITG----------DGLHEGINELYQL 184 (202)
Q Consensus 157 ~~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~ 184 (202)
.....|++++||++| .|+.+|++.|.+.
T Consensus 155 ~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~ 192 (196)
T d1d2ea3 155 KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (196)
T ss_dssp CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred CcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence 224578999999988 4888888776553
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=1.1e-20 Score=132.89 Aligned_cols=148 Identities=18% Similarity=0.219 Sum_probs=97.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC--------C--------CCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ--------Y--------LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
+++++|+++|++++|||||+++|++.. . .+.....|+|.......+ ..+...+.++||||+..
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~-~~~~~~i~iiDtPGh~d 79 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY-ETAKRHYSHVDCPGHAD 79 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEE-ECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEE-EeCCeEEEEEeCCCchh
Confidence 467999999999999999999996420 0 000111144444433333 45677899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcC-HH----HHHHHhCchh
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQ-IK----QIEKLLGLYE 154 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~----~~~~~~~~~~ 154 (202)
|.......+..+|++|+|+|+.+.-..+. ...|...... ++| +||++||+|+.+... .. ++...+....
T Consensus 80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~~----gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~ 154 (204)
T d2c78a3 80 YIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 154 (204)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986544433 3344444333 555 777899999876322 12 2333332222
Q ss_pred hcCcceEEEEEeeeecC
Q psy1315 155 LNNMHLYYIQATCAITG 171 (202)
Q Consensus 155 ~~~~~~~~~~~~Sa~~~ 171 (202)
+ .....++++.|+..+
T Consensus 155 ~-~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 155 F-PGDEVPVIRGSALLA 170 (204)
T ss_dssp S-CTTTSCEEECCHHHH
T ss_pred C-Ccccceeeeeechhh
Confidence 2 234567888888643
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.82 E-value=2.1e-19 Score=127.47 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=99.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC----------cc------------------------ccccceeeEeec
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN----------TV------------------------PTIGFNCEKVKG 60 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~----------~~------------------------~~~~~~~~~~~~ 60 (202)
..+..++|+++|+.++|||||+.+|++..... .. ...........+
T Consensus 5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 84 (222)
T d1zunb3 5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 84 (222)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence 45678999999999999999999996421100 00 001111111111
Q ss_pred ccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCC-CcEEEEeeCCCCCC
Q psy1315 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN-VPILILANKQDLPN 139 (202)
Q Consensus 61 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~-~pvivv~nK~Dl~~ 139 (202)
......+.++|+||+..|.......+..+|++|+|+|+.+.-.-+. ... ..+.... + ..+|++.||+|+.+
T Consensus 85 ---~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~-~~~~~~~---gv~~iiv~vNK~D~~~ 156 (222)
T d1zunb3 85 ---STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRH-SYIASLL---GIKHIVVAINKMDLNG 156 (222)
T ss_dssp ---ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHH-HHHHHHT---TCCEEEEEEECTTTTT
T ss_pred ---eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHH-HHHHHHc---CCCEEEEEEEcccccc
Confidence 3355689999999999999999999999999999999986432222 222 2222221 4 45889999999987
Q ss_pred CcCH------HHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 140 AIQI------KQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 140 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
.... .++..+++...+ ....++++++||.+|+|+.+
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~-~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 157 FDERVFESIKADYLKFAEGIAF-KPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTC-CCSEEEEEECCTTTCTTTSS
T ss_pred ccceehhhhHHHHhhhhHhhcc-CCCceEEEEEEcccCccCCc
Confidence 4322 122222221111 33578999999999998843
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.3e-19 Score=125.61 Aligned_cols=165 Identities=14% Similarity=0.130 Sum_probs=88.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC-CCC-------chhhHH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG-QEK-------LRPLWK 86 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-~~~-------~~~~~~ 86 (202)
+..+.++|+++|.+|||||||+|+|++.+........+.+........ ..........+.++ ... ......
T Consensus 12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (188)
T d1puia_ 12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE-VADGKRLVDLPGYGYAEVPEEMKRKWQRALG 90 (188)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE-EETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeecccee-cccccceeeeecccccchhhhhhhhhhhhhh
Confidence 466789999999999999999999998876433333232222222211 12222222222222 110 111111
Q ss_pred hh---hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEE
Q psy1315 87 SY---TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 87 ~~---~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (202)
.. ....+.++.+.+........ ...++...... ..++++++||+|+.+..........+...........++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (188)
T d1puia_ 91 EYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVDS----NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV 165 (188)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHT----TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred hhhhhhhheeEEEEeecccccchhH-HHHHHHHhhhc----cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcE
Confidence 11 22344555555555433222 23344444333 678999999999987654443333322212122346789
Q ss_pred EEeeeecCCCHHHHHHHHHHHH
Q psy1315 164 QATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+++||++|.|+++|++.|.+.+
T Consensus 166 i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 166 ETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999987654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=9.7e-20 Score=125.58 Aligned_cols=156 Identities=18% Similarity=0.149 Sum_probs=94.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh---------HHhhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL---------WKSYTRC 91 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---------~~~~~~~ 91 (202)
.|+++|.+|||||||+|+|++.+..........+........ ......+..+|++|....... .......
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH-TEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 85 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE-EETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeee-ecCCceeEeecCCCceecchhhhhhhhhhccccchhh
Confidence 589999999999999999998765433222222222211111 234556677888875322111 1112334
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+++++++.|..+.. .....+...+... ..|.++|+||+|...... .+..... .........+++++||++|
T Consensus 86 ~~~~l~~~d~~~~~--~~~~~~~~~l~~~----~~~~i~v~~k~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~vSA~~g 156 (179)
T d1egaa1 86 VELVIFVVEGTRWT--PDDEMVLNKLREG----KAPVILAVNKVDNVQEKA--DLLPHLQ-FLASQMNFLDIVPISAETG 156 (179)
T ss_dssp EEEEEEEEETTCCC--HHHHHHHHHHHSS----SSCEEEEEESTTTCCCHH--HHHHHHH-HHHTTSCCSEEEECCTTTT
T ss_pred cceeEEEEecCccc--hhHHHHHHHhhhc----cCceeeeeeeeeccchhh--hhhhHhh-hhhhhcCCCCEEEEeCcCC
Confidence 67888888876432 2222233333333 678999999999876522 1111111 0111334568999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLIL 186 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~ 186 (202)
.|+++|++.|.+.+.
T Consensus 157 ~gi~~L~~~i~~~lp 171 (179)
T d1egaa1 157 LNVDTIAAIVRKHLP 171 (179)
T ss_dssp TTHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999987653
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=2.9e-19 Score=126.05 Aligned_cols=119 Identities=26% Similarity=0.330 Sum_probs=82.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhh----hcCCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSY----TRCTD 93 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~----~~~~d 93 (202)
...+|+++|++|||||||+|+|++..+.+. .......... ......+.+||+||++.+...+..+ ...++
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~---tt~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~ 75 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA---DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 75 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET---TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCe---EEecceEEEE---EeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence 457999999999999999999998876432 2222222222 4456678999999988766655554 34468
Q ss_pred EEEEEEeCC-CchhHHHHHHHHHHH---HccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 94 GIIFVIDST-DVERMEEVKIELIKT---IKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 94 ~~ilv~d~~-~~~s~~~~~~~~~~~---~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
.+++++|.. +..++.....|+... .......+.|+++|+||+|+.....
T Consensus 76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 889999876 455666655554322 2223455899999999999977544
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=4.5e-18 Score=123.59 Aligned_cols=115 Identities=23% Similarity=0.177 Sum_probs=81.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC-----------------CCccccccceeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY-----------------LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
.-+|+++|+.|+|||||+.+++.... .+.....+.+........ ..+...++++||||+..|
T Consensus 6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~-~~~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC-FWKDHRINIIDAPGHVDF 84 (276)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEE-EETTEEEEEECCCSSSSC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeee-ccCCeEEEEecCCchhhh
Confidence 34799999999999999999964211 001111122222222222 457788999999999999
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.......++-+|++|+|+|+.+.-.... ...|...... ++|.++++||+|...
T Consensus 85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T-~~~w~~a~~~----~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 85 TIEVERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQAEKY----KVPRIAFANKMDKTG 137 (276)
T ss_dssp STTHHHHHHHCCEEEEEEETTTSSCHHH-HHHHHHHHTT----TCCEEEEEECTTSTT
T ss_pred HHHHHHHHHhhhheEEeccccCCcchhH-HHHHHHHHHc----CCCEEEEEecccccc
Confidence 9999999999999999999986433333 3344444444 899999999999754
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=4.3e-19 Score=127.23 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=101.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 65 (202)
.+.+++|+++|+.++|||||+.+|+..... +.....|.+.......+ ..
T Consensus 3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~-~~ 81 (239)
T d1f60a3 3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF-ET 81 (239)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE-EC
T ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEe-cc
Confidence 456799999999999999999999642100 00111234433322222 45
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhH------HHHHHHHHHHHccCCCCCC-cEEEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERM------EEVKIELIKTIKNNDNFNV-PILILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~------~~~~~~~~~~~~~~~~~~~-pvivv~nK~Dl~ 138 (202)
....+.++|+||+..|...+...+..+|++|+|+|+.+..-- ......+...... ++ ++||++||+|+.
T Consensus 82 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~----gv~~iiv~iNKmD~~ 157 (239)
T d1f60a3 82 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL----GVRQLIVAVNKMDSV 157 (239)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT----TCCEEEEEEECGGGG
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc----CCCeEEEEEECCCCC
Confidence 668999999999999999999999999999999999853110 1223333333222 45 478899999997
Q ss_pred CCcCH------HHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 139 NAIQI------KQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 139 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+.... .++..++....+ ....++++++|+..|.|+.+
T Consensus 158 ~~d~~~~~~~~~el~~~l~~~~~-~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 158 KWDESRFQEIVKETSNFIKKVGY-NPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC-CGGGCCEEECCTTTCBTTTB
T ss_pred CCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEEccCCCccee
Confidence 64322 223333321111 23467899999999988643
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.75 E-value=1.5e-18 Score=125.01 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=87.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 65 (202)
.+++++|+++|+.++|||||+.+|+..... ......+.+........ ..
T Consensus 21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~-~~ 99 (245)
T d1r5ba3 21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF-ET 99 (245)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE-EC
T ss_pred CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccc-cc
Confidence 456889999999999999999999532110 00111122222222222 34
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhH-----H-HHHHHHHHHHccCCCCCC-cEEEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERM-----E-EVKIELIKTIKNNDNFNV-PILILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~-----~-~~~~~~~~~~~~~~~~~~-pvivv~nK~Dl~ 138 (202)
....+.++|+||+..|..........+|++|+|+|+.+..-- . .....+...... ++ +++++.||+|+.
T Consensus 100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~----~i~~iiv~iNKmD~~ 175 (245)
T d1r5ba3 100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ----GINHLVVVINKMDEP 175 (245)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT----TCSSEEEEEECTTST
T ss_pred ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc----CCCeEEEEEEcCCCC
Confidence 567899999999999999999999999999999999853111 0 122222222222 34 588999999997
Q ss_pred CCcC----HHHHHHHhC----ch-hhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 139 NAIQ----IKQIEKLLG----LY-ELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 139 ~~~~----~~~~~~~~~----~~-~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
.... ..++...+. .. .+.....++++++||++|+||.++++
T Consensus 176 ~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 176 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 5432 112222111 10 11112368999999999999987643
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.73 E-value=5.5e-17 Score=117.52 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=78.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-------Ccccc----------ccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-------NTVPT----------IGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
+|+++|+.++|||||+.+++..... ....+ .+.+...-.... ..+...++++||||+..|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~-~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL-LFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEE-EETTEEEEEEECCCSGGGHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccc-cccccceeEEccCchhhhhh
Confidence 6999999999999999999642210 00000 112222211112 45667899999999999999
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
.....++-+|++|+|+|+.+.-.... ...|...... ++|.++++||+|..
T Consensus 83 e~~~al~~~D~avlvvda~~Gv~~~t-~~~~~~~~~~----~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 83 EIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL----GLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT----TCCEEEEEECGGGC
T ss_pred hhhhhhcccCceEEEeeccCCccchh-HHHHHhhhhc----cccccccccccccc
Confidence 99999999999999999986443333 3344444444 79999999999974
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.73 E-value=2e-18 Score=122.97 Aligned_cols=155 Identities=19% Similarity=0.232 Sum_probs=95.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeeccccccc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGKCK 66 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 66 (202)
+++++|+++|+.++|||||+.+|+..... ......|.+........ ..+
T Consensus 1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~-~~~ 79 (224)
T d1jnya3 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF-ETK 79 (224)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE-ECS
T ss_pred CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEE-ecC
Confidence 35799999999999999999999642100 00111123332222222 456
Q ss_pred ceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhH------HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERM------EEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~------~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
...+.++||||+..|.......+.-+|++|+|+|+.+...- ......+... .. ....++||+.||+|+...
T Consensus 80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~--~~~~~iIv~iNK~D~~~~ 156 (224)
T d1jnya3 80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KT--MGLDQLIVAVNKMDLTEP 156 (224)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HH--TTCTTCEEEEECGGGSSS
T ss_pred CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HH--hCCCceEEEEEcccCCCc
Confidence 67899999999999999999999999999999999864211 1122222221 11 124578999999999753
Q ss_pred cCH----HH----HHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 141 IQI----KQ----IEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 141 ~~~----~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
... .. +..++..... .....+++++||..|.|+.+
T Consensus 157 ~~~~~~~~~v~~~i~~~~~~~~~-~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 157 PYDEKRYKEIVDQVSKFMRSYGF-NTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC-CCTTCEEEECBTTTTBTTTB
T ss_pred cccHHHHHHHHHHHHhHHHhcCC-CcccCeEEEEEccCCCCccc
Confidence 221 11 1222211111 34567899999999998754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=4.6e-17 Score=125.07 Aligned_cols=167 Identities=13% Similarity=-0.016 Sum_probs=94.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc----cccccceeeEeecccccccceEEEEEEcCCCCCchh-----hH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT----VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP-----LW 85 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----~~ 85 (202)
..+.+++|+|+|.+|+|||||+|+|++...... ....++|.....+.. .....+.+|||||...... ..
T Consensus 52 ~~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~--~~~~~~~l~DtPG~~~~~~~~~~~~~ 129 (400)
T d1tq4a_ 52 IDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH--PNIPNVVFWDLPGIGSTNFPPDTYLE 129 (400)
T ss_dssp HHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC--SSCTTEEEEECCCGGGSSCCHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec--cCCCeEEEEeCCCcccccccHHHHHH
Confidence 345689999999999999999999998543211 122233443334333 2333578999999432211 22
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC---------CcCHH----HHHHHhCc
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN---------AIQIK----QIEKLLGL 152 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~---------~~~~~----~~~~~~~~ 152 (202)
...+..+|.+|++.|..-.+ .....+..+... ++|+++|.||+|... ..... .+......
T Consensus 130 ~~~~~~~d~~l~~~~~~~~~---~d~~l~~~l~~~----~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~ 202 (400)
T d1tq4a_ 130 KMKFYEYDFFIIISATRFKK---NDIDIAKAISMM----KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 202 (400)
T ss_dssp HTTGGGCSEEEEEESSCCCH---HHHHHHHHHHHT----TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HhhhhcceEEEEecCCCCCH---HHHHHHHHHHHc----CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHH
Confidence 23355688888887754221 112233333333 789999999999631 01111 11111110
Q ss_pred h-hhcCcceEEEEEeeeec--CCCHHHHHHHHHHHHHHHHh
Q psy1315 153 Y-ELNNMHLYYIQATCAIT--GDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 153 ~-~~~~~~~~~~~~~Sa~~--~~~v~~l~~~l~~~~~~~~~ 190 (202)
. .-......++|.+|... ..|+.++.+.+.+.+.++++
T Consensus 203 ~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~~ 243 (400)
T d1tq4a_ 203 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 243 (400)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred HHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHHH
Confidence 0 00112344577788654 45899999999888765443
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.67 E-value=3.1e-16 Score=113.68 Aligned_cols=130 Identities=14% Similarity=0.170 Sum_probs=84.8
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc-----
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL----- 81 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----- 81 (202)
++.+.+.......++|+++|.+|+|||||+|.+++.......+..+.|........ ......+.++||||....
T Consensus 20 e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~-~~~g~~i~viDTPGl~~~~~~~~ 98 (257)
T d1h65a_ 20 ELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR-SRAGFTLNIIDTPGLIEGGYIND 98 (257)
T ss_dssp HHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEE-EETTEEEEEEECCCSEETTEECH
T ss_pred HHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEE-EeccEEEEEEeeecccCCcchHH
Confidence 45667777778899999999999999999999999876655555555544443333 345678999999994211
Q ss_pred --hhhHHhh--hcCCCEEEEEEeCCCch---hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 82 --RPLWKSY--TRCTDGIIFVIDSTDVE---RMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 82 --~~~~~~~--~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
......+ ....|++++|++++... .-......+...+.. .-..+++||.||+|...
T Consensus 99 ~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~--~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 99 MALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK--GIWNKAIVALTHAQFSP 161 (257)
T ss_dssp HHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECCSCCC
T ss_pred HHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcch--hhhhCEEEEEECcccCC
Confidence 1111111 23468999999886431 112222333333322 11358999999999865
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.2e-14 Score=108.44 Aligned_cols=127 Identities=15% Similarity=0.165 Sum_probs=84.7
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC------------CC-----Cccc--cccceeeEeeccc-----
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ------------YL-----NTVP--TIGFNCEKVKGQI----- 62 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~------------~~-----~~~~--~~~~~~~~~~~~~----- 62 (202)
+.++.+....++--+|+|+|+.++|||||+.+|+... +. +... |...+.....+..
T Consensus 5 ~~~~~lm~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~ 84 (341)
T d1n0ua2 5 DQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDV 84 (341)
T ss_dssp HHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHH
T ss_pred HHHHHHhcCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccc
Confidence 3445555555554469999999999999999996311 00 0001 1111111111110
Q ss_pred ------ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 63 ------GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 63 ------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
.+.+.+.++++||||+..|.......++-+|++|+|+|+.+.-..... ..+...... +.|+++++||+|
T Consensus 85 ~~~~~~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~~----~~p~i~viNKiD 159 (341)
T d1n0ua2 85 KEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALGE----RIKPVVVINKVD 159 (341)
T ss_dssp HHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHHT----TCEEEEEEECHH
T ss_pred cchhccccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHHc----CCCeEEEEECcc
Confidence 133567899999999999999999999999999999999865444333 344444444 789999999999
Q ss_pred CC
Q psy1315 137 LP 138 (202)
Q Consensus 137 l~ 138 (202)
..
T Consensus 160 r~ 161 (341)
T d1n0ua2 160 RA 161 (341)
T ss_dssp HH
T ss_pred cc
Confidence 74
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.2e-14 Score=108.16 Aligned_cols=168 Identities=17% Similarity=0.179 Sum_probs=95.3
Q ss_pred HHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc------CCC-----CCcccccc------------------ceee
Q psy1315 6 AAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKF------DQY-----LNTVPTIG------------------FNCE 56 (202)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~------~~~-----~~~~~~~~------------------~~~~ 56 (202)
.+++..+.+...+.+.|+|.|+||+|||||+++|.. .+. ++.++..+ ....
T Consensus 41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir 120 (327)
T d2p67a1 41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIR 120 (327)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEE
T ss_pred HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccc
Confidence 345666777778899999999999999999999963 221 11111110 0000
Q ss_pred Eeeccc---------------ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccC
Q psy1315 57 KVKGQI---------------GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNN 121 (202)
Q Consensus 57 ~~~~~~---------------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~ 121 (202)
.....- .+...+.+.+++|.|.-. .-..+...+|.+++|.++...+..+....-+.++
T Consensus 121 ~~~~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq---~e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---- 193 (327)
T d2p67a1 121 PVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQ---SETEVARMVDCFISLQIAGGGDDLQGIKKGLMEV---- 193 (327)
T ss_dssp EECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTT---HHHHHHTTCSEEEEEECC------CCCCHHHHHH----
T ss_pred ccccccccccchhhhhHHHHHHHhcCCCeEEEeeccccc---cchhhhhccceEEEEecCCCchhhhhhchhhhcc----
Confidence 000000 011123466677776421 1123556699999999886544444333333332
Q ss_pred CCCCCcEEEEeeCCCCCCCcCHH----HHHHHhCch-hhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 122 DNFNVPILILANKQDLPNAIQIK----QIEKLLGLY-ELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 122 ~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+-++|+||+|........ .....+... .-...+..+++.|||.+|+|++++++.|.+..
T Consensus 194 -----aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 194 -----ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp -----CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred -----ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence 447889999987643222 122221110 11134667899999999999999999987744
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.54 E-value=9.6e-14 Score=103.15 Aligned_cols=169 Identities=12% Similarity=0.128 Sum_probs=99.8
Q ss_pred HHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC------CC-----CCcccccc----------------ceeeEe
Q psy1315 6 AAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD------QY-----LNTVPTIG----------------FNCEKV 58 (202)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~------~~-----~~~~~~~~----------------~~~~~~ 58 (202)
.+++..+.+...+.+.|++.|+||+|||||+++|... +. ++.++..+ .....-
T Consensus 38 ~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir 117 (323)
T d2qm8a1 38 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR 117 (323)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred HHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeec
Confidence 3456666777788999999999999999999999642 10 01111100 000000
Q ss_pred eccc-----------------ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccC
Q psy1315 59 KGQI-----------------GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNN 121 (202)
Q Consensus 59 ~~~~-----------------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~ 121 (202)
.... .+...+.+.+++|.|.-..... ....+|.+++|..+...+..+....-+.
T Consensus 118 ~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gil------ 188 (323)
T d2qm8a1 118 PSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIF------ 188 (323)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHH------
T ss_pred cccccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHh------
Confidence 0000 0112356788888885332222 3344999999999986554443332222
Q ss_pred CCCCCcEEEEeeCCCCCCCcCHH-H----HHHHhCchh-hcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 122 DNFNVPILILANKQDLPNAIQIK-Q----IEKLLGLYE-LNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 122 ~~~~~pvivv~nK~Dl~~~~~~~-~----~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..+-++|+||+|+.+..... . ....+.... -...+..+++.|||.++.|++++++.|.+...
T Consensus 189 ---E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 189 ---ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp ---HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ---hhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 23558999999987654322 1 222222111 11236678999999999999999999977553
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.54 E-value=1.6e-15 Score=108.93 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=67.6
Q ss_pred eEEEEEEcCCCCCchhhHHh---h--hcCCCEEEEEEeCCC---chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 68 INFLIWDVGGQEKLRPLWKS---Y--TRCTDGIIFVIDSTD---VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~---~--~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
..+.+.|+||+..+...... . ....+.+++++|+.. +..+............+ ...|.++|+||+|+..
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~ 171 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLS 171 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCC
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccccc
Confidence 45888999998654332222 1 223678999999753 22222221111111111 1689999999999987
Q ss_pred CcCHHHHHHHhCc------------------------hhhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 140 AIQIKQIEKLLGL------------------------YELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 140 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
............. ........++++++||++|+|+++++..|.+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~ 241 (244)
T d1yrba1 172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 241 (244)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5332221110000 000013457899999999999999999988764
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.37 E-value=1.9e-13 Score=100.89 Aligned_cols=88 Identities=18% Similarity=0.145 Sum_probs=57.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccce----eeEeeccc------------ccccceEEEEEEcCCC-
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFN----CEKVKGQI------------GKCKGINFLIWDVGGQ- 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~D~~G~- 78 (202)
.+..++|+++|-|+||||||++++++...+.....+.+| .-.+.++- .......++++|.||.
T Consensus 7 ~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv 86 (296)
T d1ni3a1 7 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 86 (296)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence 456799999999999999999999976432222111222 11122110 0112346899999982
Q ss_pred ------CCchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 79 ------EKLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 79 ------~~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
..........++++|++++|+|+.+
T Consensus 87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccccHHHHHHHhhccceeEEEEeccC
Confidence 2334567777899999999999854
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=4.5e-11 Score=88.05 Aligned_cols=119 Identities=15% Similarity=0.075 Sum_probs=70.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCc--cccccceeeEeec-----------------------------------
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNT--VPTIGFNCEKVKG----------------------------------- 60 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~--~~~~~~~~~~~~~----------------------------------- 60 (202)
...+|+|+|..++|||||+|+|++..+.+. .++....+.....
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 466899999999999999999999876332 2222111100000
Q ss_pred -------------ccccccceEEEEEEcCCCCC-------------chhhHHhhhcCCCEEE-EEEeCCCchhHHHHHHH
Q psy1315 61 -------------QIGKCKGINFLIWDVGGQEK-------------LRPLWKSYTRCTDGII-FVIDSTDVERMEEVKIE 113 (202)
Q Consensus 61 -------------~~~~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~~~~ 113 (202)
.........+.++|+||... ...+...|+.+.+.++ +|.+....-.......+
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~ 184 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence 00000122478999999311 1244666777777555 55555544333343434
Q ss_pred HHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 114 LIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 114 ~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
...+. ....++++|.||+|...+
T Consensus 185 ~~~~~----~~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 185 AKEVD----PQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHC----TTCSSEEEEEECGGGSCT
T ss_pred HHHhC----cCCCceeeEEeccccccc
Confidence 44432 236789999999998764
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.19 E-value=6e-11 Score=87.64 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=42.2
Q ss_pred EEEEEEcCCCCC-------------chhhHHhhhcCCCEEEEEEe-CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeC
Q psy1315 69 NFLIWDVGGQEK-------------LRPLWKSYTRCTDGIIFVID-STDVERMEEVKIELIKTIKNNDNFNVPILILANK 134 (202)
Q Consensus 69 ~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~ilv~d-~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK 134 (202)
.+.++|+||... ...+...|+.+++.+++++. ......-.....+...+. ....++++|.||
T Consensus 132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~----~~~~r~i~Vitk 207 (306)
T d1jwyb_ 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVITK 207 (306)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEEC
T ss_pred CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhC----cCCCeEEEEEec
Confidence 578999999321 23467778899998777764 332222222222333332 225789999999
Q ss_pred CCCCCC
Q psy1315 135 QDLPNA 140 (202)
Q Consensus 135 ~Dl~~~ 140 (202)
+|....
T Consensus 208 ~D~~~~ 213 (306)
T d1jwyb_ 208 LDLMDK 213 (306)
T ss_dssp TTSSCS
T ss_pred cccccc
Confidence 998643
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.07 E-value=1.3e-10 Score=86.29 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-------CccccccceeeEeeccc---------------ccccceEEEEEEcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-------NTVPTIGFNCEKVKGQI---------------GKCKGINFLIWDVGG 77 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-------~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~D~~G 77 (202)
++|+++|.|+||||||+|+|++.+.. ...|..|++........ .......++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 58999999999999999999986431 11222333321111100 012235799999999
Q ss_pred CCC-------chhhHHhhhcCCCEEEEEEeCCC
Q psy1315 78 QEK-------LRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 78 ~~~-------~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
.-. ........++++|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 321 22233345678999999999863
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.01 E-value=2.7e-10 Score=82.96 Aligned_cols=80 Identities=23% Similarity=0.191 Sum_probs=53.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-------CccccccceeeEeeccc---------cccc---ceEEEEEEcCCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-------NTVPTIGFNCEKVKGQI---------GKCK---GINFLIWDVGGQE 79 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-------~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~D~~G~~ 79 (202)
.+||++||-|+||||||++++++.... ...|..|+ +.++- .+.. ...++++|+||--
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gv----v~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi 77 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV----VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV 77 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE----EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEE----EecccHhHHHHHHhcCCCceeeeeEEEEEccccC
Confidence 479999999999999999999976531 11233332 22210 0111 1358899999942
Q ss_pred -------CchhhHHhhhcCCCEEEEEEeCC
Q psy1315 80 -------KLRPLWKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 80 -------~~~~~~~~~~~~~d~~ilv~d~~ 102 (202)
.........++++|++++|+|+.
T Consensus 78 ~ga~~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 78 AGASKGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp TTHHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred CCcccCCCccHHHHHHHHhccceEEEeecc
Confidence 23335667789999999999874
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.96 E-value=3e-10 Score=82.49 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=39.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
.....++|+|+|-|+||||||+|+|.+.....+++.+|+|.....+.. .-.+.+.||||.
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~----~~~~~l~DTPGi 167 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV----GKELELLDTPGI 167 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE----TTTEEEEECCCC
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEEC----CCCeEEecCCCc
Confidence 355789999999999999999999999988888999998887655533 224889999993
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.54 E-value=6e-08 Score=67.44 Aligned_cols=87 Identities=25% Similarity=0.267 Sum_probs=62.2
Q ss_pred hhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 88 YTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
...+.|.+++|+++.+|+ +...+.+++...... +.|.++|.||+||.++.....+...... ....++++.+
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~----~i~pvIvlnK~DL~~~~~~~~~~~~~~~----~~~~~~v~~v 78 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN----ELETVMVINKMDLYDEDDLRKVRELEEI----YSGLYPIVKT 78 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT----TCEEEEEECCGGGCCHHHHHHHHHHHHH----HTTTSCEEEC
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc----CCCEEEEEeCcccCCHHHHHHHHHhhcc----cccceeEEEe
Confidence 357889999999998754 445556666555554 8899999999999875444333333221 1234678999
Q ss_pred eeecCCCHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELY 182 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~ 182 (202)
|++++.|++++.+.+.
T Consensus 79 Sa~~~~g~~~L~~~l~ 94 (225)
T d1u0la2 79 SAKTGMGIEELKEYLK 94 (225)
T ss_dssp CTTTCTTHHHHHHHHS
T ss_pred ccccchhHhhHHHHhc
Confidence 9999999999988763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.48 E-value=7.2e-08 Score=67.03 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCc---cccc--c--ceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNT---VPTI--G--FNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~---~~~~--~--~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
-..+++|++|||||||+|+|.+.....+ +... | +|...--+.. ... -.++||||...
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l-~~g---g~iiDTPG~r~ 159 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF-DFG---GYVVDTPGFAN 159 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC-TTS---CEEESSCSSTT
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEE-CCC---cEEEeCCcccc
Confidence 3679999999999999999987643222 1111 1 3333333333 222 26789999644
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.41 E-value=1.9e-07 Score=67.36 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=68.9
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEE
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY 162 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (202)
......+..+|++|.|.|+.+|-+..+ ..+..+.+ ++|.++|+||+|+.+......+...+. ..+..
T Consensus 7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~------~~~~~ 73 (273)
T d1puja_ 7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFE------NQGIR 73 (273)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHH------TTTCC
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHH------hcCCc
Confidence 345667899999999999987755432 12233332 689999999999987655555555432 23456
Q ss_pred EEEeeeecCCCHHHHHHHHHHHHHHHHhh
Q psy1315 163 IQATCAITGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 163 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
.+.+|+.++.+..++.+.+.+.+.+...+
T Consensus 74 ~i~isa~~~~~~~~~~~~~~~~l~~~~~~ 102 (273)
T d1puja_ 74 SLSINSVNGQGLNQIVPASKEILQEKFDR 102 (273)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHHHH
T ss_pred cceeecccCCCccccchhhhhhhhhhhhh
Confidence 78899999999999998888877665443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=2.7e-06 Score=58.46 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=74.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC---C-C------CC------------ccccccceeeEeecccc-----------
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD---Q-Y------LN------------TVPTIGFNCEKVKGQIG----------- 63 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~---~-~------~~------------~~~~~~~~~~~~~~~~~----------- 63 (202)
+.+.-|+++|++||||||.+.+|-.. . . .+ +....++.+........
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 44556789999999999999887421 1 0 00 01112233322221110
Q ss_pred -cccceEEEEEEcCCCCCchh----h---HHhhhc-----CCCEEEEEEeCCC-chhHHHHHHHHHHHHccCCCCCCcEE
Q psy1315 64 -KCKGINFLIWDVGGQEKLRP----L---WKSYTR-----CTDGIIFVIDSTD-VERMEEVKIELIKTIKNNDNFNVPIL 129 (202)
Q Consensus 64 -~~~~~~~~~~D~~G~~~~~~----~---~~~~~~-----~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~~pvi 129 (202)
..+.+.+.++||+|...... . +...++ ..+-.++|.|... .+........+..+ -+-=
T Consensus 87 a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~~~ 158 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV--------GLTG 158 (211)
T ss_dssp HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS--------CCCE
T ss_pred HHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc--------CCce
Confidence 01345689999999432221 1 112222 2568999999863 33333333333222 1334
Q ss_pred EEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 130 ILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 130 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
++.||.|....... +-... ...+.|+.+++ .|++++++
T Consensus 159 lIlTKlDe~~~~G~--~l~~~------~~~~~Pi~~i~--~Gq~v~Dl 196 (211)
T d2qy9a2 159 ITLTKLDGTAKGGV--IFSVA------DQFGIPIRYIG--VGERIEDL 196 (211)
T ss_dssp EEEECCTTCTTTTH--HHHHH------HHHCCCEEEEE--CSSSGGGE
T ss_pred EEEeecCCCCCccH--HHHHH------HHHCCCEEEEe--CCCCcccC
Confidence 67899997554321 11111 23456777776 68877553
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.25 E-value=1.3e-07 Score=65.90 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
-..+++|++|||||||+|+|.+..
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred ceEEEECCCCccHHHHHHhhccHh
Confidence 356799999999999999999764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.21 E-value=1.9e-07 Score=65.05 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=61.1
Q ss_pred hhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHH-HHHHhCchhhcCcceEEEEE
Q psy1315 88 YTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ-IEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 165 (202)
...+.|.+++|+++.+|+ +...+.+++...... +.+.+||+||+||.++..... ++.... .....+++++.
T Consensus 7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~----~i~pvIvlnK~DL~~~~~~~~~~~~~~~---~y~~~g~~v~~ 79 (231)
T d1t9ha2 7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN----DIQPIICITKMDLIEDQDTEDTIQAYAE---DYRNIGYDVYL 79 (231)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT----TCEEEEEEECGGGCCCHHHHHHHHHHHH---HHHHHTCCEEE
T ss_pred CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc----CCCEEEEEecccccccHHHHHHHHHHHH---HHhhcccccee
Confidence 347899999999987764 455666666555444 889999999999987644332 222221 11234678999
Q ss_pred eeeecCCCHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINEL 181 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l 181 (202)
+|++++.|++++.+.+
T Consensus 80 ~Sa~~~~gl~~L~~~l 95 (231)
T d1t9ha2 80 TSSKDQDSLADIIPHF 95 (231)
T ss_dssp CCHHHHTTCTTTGGGG
T ss_pred eecCChhHHHHHHHhh
Confidence 9999999999887765
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=7.3e-06 Score=56.97 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=49.3
Q ss_pred EEEEEEcCCCCCchhhHHhh--------hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 69 NFLIWDVGGQEKLRPLWKSY--------TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 69 ~~~~~D~~G~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
...++++.|..........+ .-..+.+|.++|+.+..........+...+. ..-++|+||+|+.++
T Consensus 91 d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~------~AD~ivlNK~Dl~~~ 164 (222)
T d1nija1 91 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG------YADRILLTKTDVAGE 164 (222)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHH------TCSEEEEECTTTCSC
T ss_pred ceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHH------hCCcccccccccccH
Confidence 34677887755433332222 1225889999999754322221112222222 234788999999764
Q ss_pred cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
. +.+++.++ .+ .+..++++++ .....++.+|
T Consensus 165 ~--~~~~~~l~--~l--NP~a~Ii~~~-~g~v~~~~ll 195 (222)
T d1nija1 165 A--EKLHERLA--RI--NARAPVYTVT-HGDIDLGLLF 195 (222)
T ss_dssp T--HHHHHHHH--HH--CSSSCEEECC-SSCCCGGGGS
T ss_pred H--HHHHHHHH--HH--hCCCeEEEee-CCccCHHHhh
Confidence 2 33444332 22 3445666654 3334454443
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.10 E-value=8.5e-06 Score=55.83 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=61.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC------CC----CCc------------cccccceeeEeeccc------------c
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD------QY----LNT------------VPTIGFNCEKVKGQI------------G 63 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~------~~----~~~------------~~~~~~~~~~~~~~~------------~ 63 (202)
+.--|+++|++||||||.+.+|-.. +. .++ ....++.+....... .
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~ 84 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAM 84 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHH
Confidence 4456789999999999998777321 10 000 111122222211100 0
Q ss_pred cccceEEEEEEcCCCCCchhh----HHhh---h-----cCCCEEEEEEeCCC-chhHHHHHHHHHHHHccCCCCCCcEEE
Q psy1315 64 KCKGINFLIWDVGGQEKLRPL----WKSY---T-----RCTDGIIFVIDSTD-VERMEEVKIELIKTIKNNDNFNVPILI 130 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~----~~~~---~-----~~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~~pviv 130 (202)
....+.+.++||+|....... +..+ + ...+-.++|.|... .+....+...+..+ . +--+
T Consensus 85 ~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~-------~~~l 156 (207)
T d1okkd2 85 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-G-------LTGV 156 (207)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-C-------CSEE
T ss_pred HHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-C-------CceE
Confidence 112457899999994432221 1111 1 24578999999874 34444444444433 1 2246
Q ss_pred EeeCCCCCCC
Q psy1315 131 LANKQDLPNA 140 (202)
Q Consensus 131 v~nK~Dl~~~ 140 (202)
+.||.|....
T Consensus 157 I~TKlDet~~ 166 (207)
T d1okkd2 157 IVTKLDGTAK 166 (207)
T ss_dssp EEECTTSSCC
T ss_pred EEeccCCCCC
Confidence 7899997544
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.10 E-value=2.2e-06 Score=59.12 Aligned_cols=145 Identities=15% Similarity=0.096 Sum_probs=74.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcC----CCC------C------------ccccccceeeEeeccc----------
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFD----QYL------N------------TVPTIGFNCEKVKGQI---------- 62 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~----~~~------~------------~~~~~~~~~~~~~~~~---------- 62 (202)
...++.-|+++|++||||||.+.+|-.. ... + +....+..+.......
T Consensus 7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~ 86 (213)
T d1vmaa2 7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 86 (213)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHH
Confidence 3456678899999999999988776421 100 0 0111123222211100
Q ss_pred --ccccceEEEEEEcCCCCCchhh----HHh---hhc-----CCCEEEEEEeCCC-chhHHHHHHHHHHHHccCCCCCCc
Q psy1315 63 --GKCKGINFLIWDVGGQEKLRPL----WKS---YTR-----CTDGIIFVIDSTD-VERMEEVKIELIKTIKNNDNFNVP 127 (202)
Q Consensus 63 --~~~~~~~~~~~D~~G~~~~~~~----~~~---~~~-----~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p 127 (202)
...+.+.+.++||+|....... +.. .++ ..+-.++|.|... .+.+..+...+..+ -+
T Consensus 87 ~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~ 158 (213)
T d1vmaa2 87 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV--------NV 158 (213)
T ss_dssp HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS--------CC
T ss_pred HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc--------CC
Confidence 0123457899999994432221 111 111 1467899999863 22233333222221 23
Q ss_pred EEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 128 ILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 128 vivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
-=+|.||.|...... .+-... ...+.|+.+++ +|++++++
T Consensus 159 ~~lI~TKlDe~~~~G--~~l~~~------~~~~~Pi~~i~--~Gq~v~Dl 198 (213)
T d1vmaa2 159 TGIILTKLDGTAKGG--ITLAIA------RELGIPIKFIG--VGEKAEDL 198 (213)
T ss_dssp CEEEEECGGGCSCTT--HHHHHH------HHHCCCEEEEE--CSSSGGGE
T ss_pred ceEEEecccCCCccc--HHHHHH------HHHCCCEEEEe--CCCCcccC
Confidence 457789999754332 122211 22456776666 57777553
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.05 E-value=3.6e-06 Score=57.77 Aligned_cols=111 Identities=15% Similarity=0.201 Sum_probs=58.5
Q ss_pred EEEEcCCCCCHHHHHHHhhcC------CC----CC------------ccccccceeeEeeccc------------ccccc
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD------QY----LN------------TVPTIGFNCEKVKGQI------------GKCKG 67 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~------~~----~~------------~~~~~~~~~~~~~~~~------------~~~~~ 67 (202)
|+++|++||||||.+.+|-.. +. .+ +....++......... .....
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA 92 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhhcc
Confidence 678999999999999887421 10 00 1111233333322211 01244
Q ss_pred eEEEEEEcCCCCCchh----hHHhh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 68 INFLIWDVGGQEKLRP----LWKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~----~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
..+.++||+|...... .+..+ ..+.+-+++|.|......-......+..... +-=++.||.|...
T Consensus 93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~-------~~~~I~TKlDe~~ 163 (207)
T d1ls1a2 93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------VTGLVLTKLDGDA 163 (207)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC-------CCEEEEECGGGCS
T ss_pred CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC-------CCeeEEeecCccc
Confidence 5789999999443222 11111 3347899999998644322222222222111 1237789999644
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.01 E-value=1.4e-06 Score=58.29 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+||+++|++|+|||||++.+.+.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhc
Confidence 58999999999999999999864
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=2.4e-05 Score=56.11 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=47.2
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-Cc-----cccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NT-----VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
+.++.+.....+-.=|.++|+.++|||+|+|.|++..+. .. ..|.|+-...... .++....+.++||.|.
T Consensus 20 e~l~~l~~~~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~--~~~~~~~~~~lDteG~ 95 (277)
T d1f5na2 20 EALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH--PKKPGHILVLLDTEGL 95 (277)
T ss_dssp HHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC--SSSTTCEEEEEEECCB
T ss_pred HHHHHHHcCCCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec--cCCCCceEEEEecccc
Confidence 344455555555667889999999999999999987642 22 3444544433333 2456677889999994
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.87 E-value=5.4e-07 Score=62.08 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.=|+++|.||||||||+++|..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999874
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.87 E-value=2.3e-05 Score=53.77 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=69.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC------CCC----C------------ccccccceeeEeecccc----------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD------QYL----N------------TVPTIGFNCEKVKGQIG---------- 63 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~------~~~----~------------~~~~~~~~~~~~~~~~~---------- 63 (202)
.+.+.-|+++|++||||||.+.+|-.. +.. + +....++.+........
T Consensus 9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~ 88 (211)
T d1j8yf2 9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 88 (211)
T ss_dssp SSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHH
Confidence 345566788999999999998777421 100 0 01111222222111100
Q ss_pred --cccceEEEEEEcCCCCCch------hhHHhh--hcCCCEEEEEEeCCCc-hhHHHHHHHHHHHHccCCCCCCcEEEEe
Q psy1315 64 --KCKGINFLIWDVGGQEKLR------PLWKSY--TRCTDGIIFVIDSTDV-ERMEEVKIELIKTIKNNDNFNVPILILA 132 (202)
Q Consensus 64 --~~~~~~~~~~D~~G~~~~~------~~~~~~--~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~pvivv~ 132 (202)
......+.++||+|...+. .....+ .-..+-+++|.++... +........+... -+--++.
T Consensus 89 ~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~~~lI~ 160 (211)
T d1j8yf2 89 KFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS--------KIGTIII 160 (211)
T ss_dssp HHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC--------TTEEEEE
T ss_pred HhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc--------CcceEEE
Confidence 1244578999999943221 111111 2236788999998643 3333332222211 1234678
Q ss_pred eCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 133 NKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 133 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
||.|.... .-.+-... ...+.|+.+++ .|++++++
T Consensus 161 TKlDet~~--~G~~l~~~------~~~~lPi~~it--~Gq~v~DL 195 (211)
T d1j8yf2 161 TKMDGTAK--GGGALSAV------AATGATIKFIG--TGEKIDEL 195 (211)
T ss_dssp ECTTSCSC--HHHHHHHH------HTTTCCEEEEE--CSSSTTCE
T ss_pred ecccCCCc--ccHHHHHH------HHHCcCEEEEe--CCCCcccC
Confidence 99996543 22222221 23466776666 58877653
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.85 E-value=4.7e-06 Score=55.27 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.++|++.|++||||||+.+.|...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 56889999999999999999998643
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.82 E-value=3.9e-06 Score=56.21 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-+|+|.|++|||||||+++|...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999753
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.81 E-value=4.5e-06 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.++|+++|+|||||||+++.|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999854
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.74 E-value=6.9e-06 Score=55.51 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+++|+|+|+|||||||++..|..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998854
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.70 E-value=1e-05 Score=54.19 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++|+|+|+|||||||+++.|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.70 E-value=1.1e-05 Score=54.51 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.++|+++|+|||||||++..|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998863
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.68 E-value=1.4e-05 Score=54.14 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+-++|+++|+|||||||+...|...
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=1.4e-05 Score=53.46 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+++|++|+||+||+++|+..
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999853
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=1.1e-05 Score=53.26 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-|+|+|.+|||||||++++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999974
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.65 E-value=1.3e-05 Score=53.74 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++|+++|+|||||||+++.|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988643
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=1.6e-05 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++|+++|+|||||||+.+.|...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998643
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.62 E-value=1.5e-05 Score=51.65 Aligned_cols=21 Identities=24% Similarity=0.312 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|++.|+||||||||+++|...
T Consensus 5 Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 788999999999999998653
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.62 E-value=1.9e-05 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+++.-|+|+|+|||||||++++|..
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=1.7e-05 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++|+|+|+|||||||+++.|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988853
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.58 E-value=1.9e-05 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.++|+|+|+|||||||+++.|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.58 E-value=2.2e-05 Score=52.86 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+|+|++|||||||+++|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999754
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.55 E-value=2.8e-05 Score=51.55 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+..+..-|.++|.+||||||+.+.|..
T Consensus 2 ~~~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 2 RATQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455678899999999999999988863
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=2.8e-05 Score=53.25 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
=|+++||+|||||||+++|+..
T Consensus 4 livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999754
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.51 E-value=3e-05 Score=51.98 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+++|++|||||||++.|...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999998744
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.51 E-value=2.5e-05 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|++.|+|||||||+++.|...
T Consensus 5 I~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999743
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=4e-05 Score=50.93 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
+|.+.|++|+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999864
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=2.7e-05 Score=50.74 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.|+++|++||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999988643
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=4.8e-05 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-+++++|+||+|||+++..|...
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHHH
Confidence 347899999999999999888643
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.46 E-value=5.2e-05 Score=52.94 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=23.6
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.......++++.|+||+||||+++.+.+.
T Consensus 30 ~~~~~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 30 ARKEPLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp TSSSCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 33445678999999999999999988753
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.44 E-value=3.3e-05 Score=50.87 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHhhc
Q psy1315 22 IVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~ 41 (202)
|.|+|.+|||||||++++..
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999974
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.44 E-value=4.5e-05 Score=53.22 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+...++++.|+||+||||+++.+...
T Consensus 31 ~~~~~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 31 RGEVLDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp HTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCcHHHHHHHHHhc
Confidence 3444568999999999999999988653
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=3.1e-05 Score=51.02 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~ 40 (202)
.+|+++|.+||||||+.+.+.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998884
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.43 E-value=3.8e-05 Score=51.90 Aligned_cols=20 Identities=40% Similarity=0.502 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHhhc
Q psy1315 22 IVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~ 41 (202)
|+|+|++|||||||+++|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=3.9e-05 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++.|+++|+|||||||.+..|..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988854
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.39 E-value=4.2e-05 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+.+.=|+++|.|||||||+++++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999864
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00022 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-++++||+||+|||++++.|...
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHHH
Confidence 348899999999999999988643
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=6.2e-05 Score=52.70 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=22.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.+.=+++++|+.|||||||++.+.+-.
T Consensus 27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 27 KQGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 345579999999999999999987743
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.29 E-value=5.9e-05 Score=49.45 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q psy1315 21 HIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~ 40 (202)
+|+++|.+||||||+.+.|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 48999999999999998884
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.29 E-value=0.00011 Score=49.36 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....++=|+|-|++|||||||+++|..
T Consensus 18 ~~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 18 KTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 445677899999999999999999864
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.25 E-value=7.3e-05 Score=49.74 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHhh
Q psy1315 22 IVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~ 40 (202)
|+|.|.+||||||+++.|.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999999884
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=8e-05 Score=48.92 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
=++++|++||||||+.+.|..
T Consensus 8 iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999864
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.23 E-value=8.8e-05 Score=48.89 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|++.|++||||||+.+.|...
T Consensus 7 I~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999988654
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.22 E-value=9.3e-05 Score=51.83 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=22.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+.=.++++|+.|||||||++.+.+-
T Consensus 25 i~~Ge~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 25 AQPNSIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 344558999999999999999998764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.21 E-value=0.00011 Score=49.93 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
=.++++|+.|+|||||++.+.+-..
T Consensus 28 ei~~l~G~NGsGKSTLl~~i~gl~~ 52 (200)
T d1sgwa_ 28 NVVNFHGPNGIGKTTLLKTISTYLK 52 (200)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcccc
Confidence 3578999999999999999987543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.20 E-value=9.4e-05 Score=52.17 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.=.++++|+.|||||||++.+.+-
T Consensus 39 ~~Ge~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 39 PAGKTVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcc
Confidence 34457999999999999999988764
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.20 E-value=0.00012 Score=49.51 Aligned_cols=26 Identities=35% Similarity=0.308 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++..-|+++|+|||||||++..|...
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34556899999999999999998653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.20 E-value=0.00038 Score=50.82 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-+|+|.|++|||||||++.|+..
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred hCCCEEEEeeccccchHHHHHHhhh
Confidence 3456999999999999999999864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.20 E-value=9.4e-05 Score=51.30 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCcchhhHhccCCC
Confidence 34468999999999999999777653
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.20 E-value=0.00013 Score=51.64 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=22.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.+--|++.|+||+|||||++.+...
T Consensus 29 ~~~P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 29 VESPTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344456999999999999999998654
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=9.8e-05 Score=51.25 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=-++++|+.|||||||++.+.+-.
T Consensus 25 ~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34468999999999999999887653
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.0001 Score=51.88 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=23.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.++.=.++++|+.|||||||++.+.+-.
T Consensus 37 i~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 37 LRPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 3445579999999999999999887643
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.18 E-value=0.0001 Score=49.17 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=17.4
Q ss_pred cEEE-EEcCCCCCHHHHHHHhh
Q psy1315 20 VHIV-MLGLDSAGKTTALYRLK 40 (202)
Q Consensus 20 ~~i~-v~G~~~~GKssL~~~l~ 40 (202)
+||+ |.|.+||||||+++.|.
T Consensus 1 mkiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 1 MKIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3565 56999999999999884
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.16 E-value=0.00011 Score=48.51 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q psy1315 21 HIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~ 40 (202)
.|+++|.+||||||+.+.|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999884
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.16 E-value=0.00011 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.--|+++|+|||||||++.+|...
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999998643
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.14 E-value=0.00012 Score=52.39 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.+.=.++++|+.|||||||++.+.+-.
T Consensus 60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 60 EKGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 344569999999999999999998753
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.13 E-value=0.00012 Score=50.97 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
+.=.++++|+.|||||||++.+.+-..
T Consensus 31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~ 57 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTTTLRMIAGLEE 57 (239)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 344689999999999999999887643
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.13 E-value=0.00012 Score=48.18 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|++.|.+||||||+.+.|...
T Consensus 6 I~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 566699999999999998754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.13 E-value=0.00012 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
-++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46799999999999999998754
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00015 Score=50.61 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=-++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 34468999999999999999987754
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.05 E-value=0.00017 Score=50.32 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.=.++++|+.|||||||++.+.+-..
T Consensus 29 Ge~~~liG~sGaGKSTll~~i~gl~~ 54 (240)
T d1g2912 29 GEFMILLGPSGCGKTTTLRMIAGLEE 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCC
Confidence 34689999999999999999887643
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=8.3e-05 Score=49.93 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+..-|.++|.|||||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 466788999999999999999854
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.03 E-value=0.00034 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.-.|++.|+||+|||+|++.+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhh
Confidence 455799999999999999999864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.03 E-value=0.00017 Score=50.42 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
=-++++|+.|+|||||++.+.+-..
T Consensus 33 ei~~liGpnGaGKSTl~~~i~Gl~~ 57 (240)
T d1ji0a_ 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3579999999999999999987643
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.02 E-value=0.0002 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.+.|++-|+|||||||+...|..
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999998864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.00022 Score=49.77 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=23.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL 45 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~ 45 (202)
+.=-++++|+.|+|||||++.+.+-..+
T Consensus 27 ~Gei~glvG~nGaGKSTLl~~l~G~~~p 54 (238)
T d1vpla_ 27 EGEIFGLIGPNGAGKTTTLRIISTLIKP 54 (238)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3446889999999999999999876543
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.01 E-value=0.00011 Score=50.78 Aligned_cols=26 Identities=31% Similarity=0.193 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.=-++++|+.|||||||++.+.+-..
T Consensus 26 Ge~~~liGpsGaGKSTll~~l~Gl~~ 51 (229)
T d3d31a2 26 GEYFVILGPTGAGKTLFLELIAGFHV 51 (229)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 34589999999999999999987643
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.00 E-value=0.00012 Score=51.56 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.++.=+++++|+.|||||||++.+.+-
T Consensus 41 i~~Ge~vaivG~sGsGKSTLl~ll~gl 67 (255)
T d2hyda1 41 IEKGETVAFVGMSGGGKSTLINLIPRF 67 (255)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHhc
Confidence 345558999999999999999987654
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.98 E-value=0.00054 Score=44.40 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=22.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
++..-|++-|+-|+|||||++.+...-
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 456678999999999999999997553
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.00024 Score=48.53 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++-|++-|++|||||||.+.|..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57799999999999999998853
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.95 E-value=0.00049 Score=48.38 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.....-.++|.|++|+|||++++.+...
T Consensus 39 ~~~~~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 39 PGHHYPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3455668999999999999999988753
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00015 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.=-++++|+.|+|||||++.+.+-
T Consensus 24 ~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 24 AGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3446899999999999999999874
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.91 E-value=0.00029 Score=47.23 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.++-|++.|.+||||||+++.|...
T Consensus 1 k~p~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 1 KHPIIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 35788999999999999999988543
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=96.90 E-value=0.00025 Score=50.06 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|||||||++.+.+-.
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 34468999999999999999998753
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.90 E-value=0.00028 Score=47.44 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..++++-|+|-|..||||||+++.|...
T Consensus 5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999988753
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.89 E-value=0.00026 Score=49.86 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
-++++|+.|+|||||++.+.+-.
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 57999999999999999998764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.00036 Score=48.72 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.....++++.|++|+||||+++.+...
T Consensus 30 ~~~~~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 30 PRDLPHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp TTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 344557999999999999999988653
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.84 E-value=0.0006 Score=50.94 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=17.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~ 40 (202)
-++++||+||||||++++.|.
T Consensus 44 ~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHH
T ss_pred CCCeEECCCCCCHHHHHHHHH
Confidence 345899999999999987664
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.82 E-value=0.00038 Score=48.08 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..++++.|++|+||||+++.+...
T Consensus 45 ~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 45 MPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999988653
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.81 E-value=0.00016 Score=50.49 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
+.=.++++|+.|||||||++.+.+-..
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~~ 56 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLDV 56 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCcC
Confidence 445789999999999999999987543
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.80 E-value=0.00031 Score=50.98 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-.|+++||||||||.|++++...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 356899999999999999998653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.00048 Score=48.13 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
....+++.|+||+||||+++.+....
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44579999999999999999998654
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.72 E-value=0.0005 Score=46.88 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.2
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...++..-|.+.|.||||||||.+.|..
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567788899999999999999998864
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.67 E-value=0.00081 Score=49.79 Aligned_cols=35 Identities=20% Similarity=0.055 Sum_probs=26.7
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+++.......+.-.+++.||||+|||+|+..+.+.
T Consensus 143 ~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~ 177 (362)
T d1svma_ 143 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 177 (362)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHH
Confidence 34444445556668999999999999999998643
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.00052 Score=46.90 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
=|++.|+|||||||+...|...
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4677799999999999988643
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.60 E-value=0.00043 Score=49.00 Aligned_cols=21 Identities=24% Similarity=-0.013 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.+.|+||+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999998754
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.60 E-value=0.00054 Score=48.25 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
-.|+|.|++|+|||||++++..
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHH
Confidence 3678999999999999999864
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.55 E-value=0.00063 Score=46.74 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..++++.|++|+||||+++.+...
T Consensus 36 ~~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 36 MPHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCchhhHHHHHHH
Confidence 346999999999999999887643
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00079 Score=48.61 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=23.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+.++=|+|.|++|||||||.+.|..
T Consensus 76 ~~k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 76 GQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence 456789999999999999999988753
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.53 E-value=0.00072 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..++++.|++|+||||+++.+...
T Consensus 33 ~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 33 LPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCChHHHHHHHHHH
Confidence 345899999999999999988754
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.48 E-value=0.0007 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.++++.|++|+||||+++.+...
T Consensus 36 ~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 36 PHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHH
Confidence 36999999999999999998753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.46 E-value=0.00076 Score=47.22 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+-.|++.|+||+|||+|++.+...
T Consensus 42 ~~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHH
Confidence 446999999999999999999853
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.34 E-value=0.0011 Score=44.70 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+-|+|-|..||||||+++.|..
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999988763
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.0021 Score=45.79 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=23.3
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhh
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
....+.++=|+|-|++|||||||...+.
T Consensus 21 ~~~~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 21 ETGNKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp TTTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCCCCEEEEeECCCCCCHHHHHHHHH
Confidence 4456678899999999999999998764
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.30 E-value=0.0017 Score=46.16 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=26.1
Q ss_pred HHHHHHhhc-CCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 6 AAFFENLQA-SGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 6 ~~~~~~~~~-~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+++..+.. ......-|++.|.+|+|||||+..+.+.
T Consensus 30 ~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 30 DRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345555544 2333446789999999999999988653
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.0014 Score=46.12 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-.+++.|+||+|||++++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 456999999999999999998743
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.23 E-value=0.001 Score=50.54 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~ 40 (202)
-+|+++||+|||||-|+++|-
T Consensus 50 sNILliGPTGvGKTlLAr~LA 70 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLA 70 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred ccEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999984
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.22 E-value=0.0015 Score=45.98 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+-.|++.|+||+|||+|++.+...
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceeEEecCCCCCchHHHHHHHHH
Confidence 3456999999999999999988754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0019 Score=43.56 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..--+.|.|+||+|||+|+..+..+
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445789999999999999988753
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.95 E-value=0.00096 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
+++++|+||+|||+|++++..
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 799999999999999998853
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.0021 Score=43.55 Aligned_cols=20 Identities=50% Similarity=0.517 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHhhc
Q psy1315 22 IVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~ 41 (202)
|+|-|..||||||+++.|..
T Consensus 5 IviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78889999999999998763
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.91 E-value=0.0017 Score=45.93 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
...-.|++.|++|+|||+|++++.+.-
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 345579999999999999999997543
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0025 Score=43.23 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+-|+|.|..||||||+++.|...
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCcCCHHHHHHHHHHC
Confidence 45889999999999999988644
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.88 E-value=0.0034 Score=42.38 Aligned_cols=22 Identities=23% Similarity=0.074 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+-|++.|..||||||+++.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.0024 Score=43.97 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=21.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.--+.|.|+||+|||+|+.++...
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34456889999999999999988754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.87 E-value=0.0025 Score=41.92 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.-|++.|++|+|||||+..|....
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHcC
Confidence 458999999999999999988654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.85 E-value=0.0052 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-|+|.|++||||||.++.++..
T Consensus 160 liLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 160 IILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHhhh
Confidence 4899999999999999999864
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.004 Score=45.06 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
-.++++|++|||||.|++.+..
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHh
Confidence 3689999999999999998854
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.77 E-value=0.0027 Score=44.02 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..--++|.|+||+|||+|..++..+
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3446889999999999999988753
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.76 E-value=0.0031 Score=41.49 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
..-|++.|++|+|||||+..|....
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 3458999999999999999998654
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.76 E-value=0.0016 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=16.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
++.=|+|.|++||||||+.++|.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 45569999999999999998873
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0029 Score=42.96 Aligned_cols=21 Identities=43% Similarity=0.502 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
=|+|-|..||||||+++.|..
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377789999999998887743
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.69 E-value=0.0039 Score=46.07 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
....-+|+++||+|||||-|+++|.
T Consensus 65 ~~p~~niLfiGPTGvGKTElAk~LA 89 (364)
T d1um8a_ 65 ELSKSNILLIGPTGSGKTLMAQTLA 89 (364)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcceeeeCCCCccHHHHHHHHH
Confidence 3345669999999999999999885
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0044 Score=41.92 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=25.5
Q ss_pred chHHHHHHhhcC--CCccc-EEEEEcCCCCCHHHHHHHhhc
Q psy1315 4 NSAAFFENLQAS--GSSSV-HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 4 ~~~~~~~~~~~~--~~~~~-~i~v~G~~~~GKssL~~~l~~ 41 (202)
|..++++++... ..+.. .+++.|++|+||||+++.+..
T Consensus 6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence 344455555332 22333 399999999999999998765
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.64 E-value=0.0047 Score=41.99 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.+.|++|+|||-|++++...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999988754
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.63 E-value=0.0019 Score=44.47 Aligned_cols=22 Identities=36% Similarity=0.255 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.|+|-|..||||||+++.|...
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988653
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.58 E-value=0.0048 Score=41.36 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=24.8
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-....+.-.+++.|++++|||.|+.+++.-
T Consensus 47 l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~ 76 (205)
T d1tuea_ 47 LKGTPKKNCLVFCGPANTGKSYFGMSFIHF 76 (205)
T ss_dssp HHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HcCCCCceEEEEECCCCccHHHHHHHHHHH
Confidence 345567789999999999999999888643
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.52 E-value=0.0037 Score=43.06 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=21.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+.--++|.|+||+|||+|+.++...
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 335556889999999999999888643
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.44 E-value=0.0045 Score=40.44 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
..-|++.|++|+||||+.-.+....
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 3468999999999999998887654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.33 E-value=0.005 Score=44.52 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHhhc
Q psy1315 22 IVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~ 41 (202)
+++.|+||+|||.|++.+-+
T Consensus 126 ~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 44579999999999999864
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.24 E-value=0.044 Score=38.41 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=20.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
....--+.+.|++++|||+|+..+.
T Consensus 57 ~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 57 LPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp BCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred cccceeEEEecCCCcHHHHHHHHHH
Confidence 4445567899999999999987776
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.011 Score=40.64 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+++.|++|+|||++++.+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998754
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0052 Score=42.32 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-|+|=|..||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478889999999999999874
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.0058 Score=42.18 Aligned_cols=26 Identities=23% Similarity=0.013 Sum_probs=21.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+.--+.|.|+||+|||+|..++..
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34455789999999999999999975
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.17 E-value=0.0057 Score=42.00 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.--+.|.|+||+|||+|+..+..+
T Consensus 34 G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 34 QSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 345789999999999999999754
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.17 E-value=0.0037 Score=44.71 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=16.4
Q ss_pred EEEEcCCCCCHHHHHHHh
Q psy1315 22 IVMLGLDSAGKTTALYRL 39 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l 39 (202)
.+++|+.||||||++.++
T Consensus 27 nvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEEECCTTTCSTHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 478999999999999887
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.00088 Score=44.83 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=16.2
Q ss_pred EEEcCCCCCHHHHHHHhh
Q psy1315 23 VMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 23 ~v~G~~~~GKssL~~~l~ 40 (202)
+|+|+.|||||||+.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 578999999999999984
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.94 E-value=0.0069 Score=36.99 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=23.8
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhh
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
|+.++.+.|.+-|..|+|||+|.+.|.
T Consensus 1 Pr~kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 1 PRPKQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp CGGGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred CCCccceEEEEeCCCCCCHHHHHHHHH
Confidence 345678999999999999999999985
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.91 E-value=0.0075 Score=41.07 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=19.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
...--+.|.|+||+|||+|+..+.
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 345567889999999999987764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.81 E-value=0.0082 Score=40.75 Aligned_cols=21 Identities=43% Similarity=0.433 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
=|+|=|..||||||+++.|..
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999988753
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=94.71 E-value=0.01 Score=43.13 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.++|.|=|.-||||||+++.|...
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred ceEEEEEECCccCCHHHHHHHHHHH
Confidence 5689999999999999999988754
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.66 E-value=0.0079 Score=45.17 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.-|++|+|.+|+|||+++..++.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEeCCCCcHHHHHHHHHH
Confidence 35699999999999999877653
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.53 E-value=0.011 Score=41.59 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHhhc
Q psy1315 22 IVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~ 41 (202)
++|.|+||+|||+|+..+..
T Consensus 38 ~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 38 IMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 67999999999999887753
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.51 E-value=0.011 Score=40.70 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-|++.|..||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998854
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=94.48 E-value=0.0087 Score=43.49 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.++|+|=|.-|+||||+++.|...
T Consensus 4 ~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 4 GVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.0096 Score=44.31 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=17.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~ 40 (202)
.+ .+++|+.|+|||+++.++.
T Consensus 26 ~l-~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 26 NF-TSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp SE-EEEECSTTSSHHHHHHHHH
T ss_pred CE-EEEECCCCCCHHHHHHHHH
Confidence 45 3588999999999999974
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.38 E-value=0.073 Score=37.23 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.-=+.+.|++++|||+|+..+..
T Consensus 57 g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 57 GRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEecCCccchHHHHHHHHH
Confidence 33567899999999999988764
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.28 E-value=0.011 Score=42.77 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..++|+|=|.-||||||+++.|..
T Consensus 3 ~~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 3 TLLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred CceEEEEECCcCCCHHHHHHHHHH
Confidence 457899999999999999998864
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=94.20 E-value=0.019 Score=39.78 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 6 AAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.++..++........-|++.|++|+||+.+++.+-.
T Consensus 10 ~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 10 KEILEKIKKISCAECPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp HHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence 345555555556666799999999999999888753
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.14 E-value=0.033 Score=39.04 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=25.2
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.....+.-.+.+.|++++|||+|++.+..-
T Consensus 98 ~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~ 127 (267)
T d1u0ja_ 98 TKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccEEEEEEcCCCCCHHHHHHHHHHH
Confidence 345677889999999999999999988753
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.12 E-value=0.017 Score=41.67 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.++++|++|+|||.|++.+..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 678889999999999988754
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.016 Score=40.59 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=17.0
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q psy1315 21 HIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~ 40 (202)
-.++.|++|+|||+|+..+.
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 35689999999999998774
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=93.88 E-value=0.011 Score=42.06 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=13.0
Q ss_pred EEEEcCCCCCHHHHH
Q psy1315 22 IVMLGLDSAGKTTAL 36 (202)
Q Consensus 22 i~v~G~~~~GKssL~ 36 (202)
++|+|.||+||||.+
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEeeCCccHHHHH
Confidence 688999999999754
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.021 Score=40.48 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.=+++++|++|+|||+|+..+..+
T Consensus 42 rGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 42 RGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp TTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 4558999999999999999888753
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=93.58 E-value=0.016 Score=41.50 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=13.2
Q ss_pred EEEEcCCCCCHHHHH
Q psy1315 22 IVMLGLDSAGKTTAL 36 (202)
Q Consensus 22 i~v~G~~~~GKssL~ 36 (202)
++|.|.+|+||||.+
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEecCCccHHHHH
Confidence 889999999999654
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=93.25 E-value=0.023 Score=35.72 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=13.7
Q ss_pred EEEcCCCCCHHH-HHHHh
Q psy1315 23 VMLGLDSAGKTT-ALYRL 39 (202)
Q Consensus 23 ~v~G~~~~GKss-L~~~l 39 (202)
+++|+-.||||| |++++
T Consensus 6 ~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRL 23 (139)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHH
Confidence 467999999999 66655
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.16 E-value=0.23 Score=33.25 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=46.9
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEE-EEeeCCCCCCCc
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL-ILANKQDLPNAI 141 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~ 141 (202)
..+.+.++|+|+... ......+..+|.++++...+ ..++....+.+..+.+. +.|++ +|.|+.|..+..
T Consensus 110 ~~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~----~~~~~giv~N~~~~~~~~ 179 (237)
T d1g3qa_ 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA----GLAILGFVLNRYGRSDRD 179 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT----TCEEEEEEEEEETSCTTC
T ss_pred hcCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh----hhhhhhhhhcccccccch
Confidence 346789999997643 34455677799999999875 35566666555444433 56765 788999875543
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.48 E-value=0.04 Score=38.52 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=18.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.-=+.+.|++|+|||+|+-++..
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 34577999999999999988754
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.40 E-value=0.038 Score=40.47 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=15.6
Q ss_pred EEEEEcCCCCCHHHHHHHh
Q psy1315 21 HIVMLGLDSAGKTTALYRL 39 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l 39 (202)
-.++.|+||+|||+++..+
T Consensus 165 ~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp EEEEECCTTSTHHHHHHHH
T ss_pred eEEEEcCCCCCceehHHHH
Confidence 5788899999999987543
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=92.22 E-value=0.045 Score=38.11 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=40.7
Q ss_pred ceEEEEEEcCCCCCc-hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCC
Q psy1315 67 GINFLIWDVGGQEKL-RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNA 140 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~-~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~ 140 (202)
.+.+.++|+|+.... ..........+|.++++.+.+ ..++.........+.......+.+ .-+|.|+.+....
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~ 189 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE 189 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc
Confidence 456889999874432 223333345578888888774 455555444433332221122333 3367899886654
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.41 E-value=0.066 Score=37.56 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.=|++++|++|+|||+|+..+..+
T Consensus 68 GQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 68 GGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHH
Confidence 347999999999999998888643
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.40 E-value=0.56 Score=29.07 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=26.5
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
......++.|++.+ ++.+=|.....+....... .+++|++.|-..|-...
T Consensus 73 ~~~~~~~~~dvI~I----DE~QFf~d~~~~~~~~l~~---~g~~Viv~GLd~Df~~~ 122 (141)
T d1xx6a1 73 ILKYFEEDTEVIAI----DEVQFFDDEIVEIVNKIAE---SGRRVICAGLDMDFRGK 122 (141)
T ss_dssp HHHHCCTTCSEEEE----CSGGGSCTHHHHHHHHHHH---TTCEEEEEECSBCTTSC
T ss_pred hhhhhcccccEEEE----eehhhccccHHHHHHhhee---CCcEEEEEEeccccccC
Confidence 33444556675443 4333343323232222222 27899999998886544
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.83 E-value=0.11 Score=34.48 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=25.2
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+++++-... ....+++.|++|+|||+++..+..
T Consensus 5 ~l~~~i~~~-~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 5 TLKRIIEKS-EGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp HHHHHHHTC-SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 344444433 577999999999999999988764
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=90.18 E-value=0.091 Score=32.29 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=16.4
Q ss_pred ccEE-EEEcCCCCCHHHHHHHhh
Q psy1315 19 SVHI-VMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 19 ~~~i-~v~G~~~~GKssL~~~l~ 40 (202)
..++ ++.+++|+|||.++-.+.
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH
Confidence 3444 678999999998876554
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=89.39 E-value=0.11 Score=36.09 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=13.7
Q ss_pred EEEEcCCCCCHHHHHHHh
Q psy1315 22 IVMLGLDSAGKTTALYRL 39 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l 39 (202)
|++.|..|+||||+.-.|
T Consensus 23 ii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 23 IMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 355599999999976554
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=89.13 E-value=0.13 Score=36.16 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=37.4
Q ss_pred cceEEEEEEcCCCCCchhhHHhh-hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcE-EEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSY-TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPI-LILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~-~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pv-ivv~nK~Dl~ 138 (202)
+.+.+.++|+|+..........+ ...++.++++...+ ..++.........+.......+.++ -+|.|+.+..
T Consensus 117 ~~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~ 190 (289)
T d2afhe1 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD 190 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred ccCCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcch
Confidence 34678899998754322222222 23466666665543 3455555444443333222234444 3778987643
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=89.01 E-value=0.12 Score=36.10 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=23.0
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcE-EEEeeCC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPI-LILANKQ 135 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pv-ivv~nK~ 135 (202)
+.+++|-..+ ..+.....+.+..+... +.|+ -+|+||.
T Consensus 199 t~~~lVt~pe-~~~~~~~~r~~~~l~~~----gi~~~~vVvN~v 237 (296)
T d1ihua1 199 TRLVLVARLQ-KSTLQEVARTHLELAAI----GLKNQYLVINGV 237 (296)
T ss_dssp EEEEEEEESC-HHHHHHHHHHHHHHHHH----TCCCEEEEEEEE
T ss_pred ceeeEecCcc-hhHHHHHHHHHHHHHhc----CCCceEEEEcCC
Confidence 3566665553 45666666666655544 4555 4677996
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.96 E-value=0.16 Score=34.57 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHh
Q psy1315 22 IVMLGLDSAGKTTALYRL 39 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l 39 (202)
+++.|+..+|||++++++
T Consensus 44 ~iiTGpN~~GKSt~lk~i 61 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQT 61 (234)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHH
Confidence 688999999999999987
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.81 E-value=0.13 Score=36.31 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.=|++++|++|+|||+|+..+..+
T Consensus 67 ~GQr~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 67 RGQRELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEeecCCCCChHHHHHHHHHh
Confidence 4457899999999999998777643
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=87.45 E-value=0.18 Score=34.11 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHhh
Q psy1315 22 IVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~ 40 (202)
+++.|+..+|||++++++.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESCSSSSHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhH
Confidence 6899999999999999873
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=87.13 E-value=0.23 Score=32.39 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+|+|...||||.+..++...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 689999999999999998744
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=87.02 E-value=0.64 Score=29.96 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=18.4
Q ss_pred cCCCcccEEEEEcC-CCCCHHHHHHHhhc
Q psy1315 14 ASGSSSVHIVMLGL-DSAGKTTALYRLKF 41 (202)
Q Consensus 14 ~~~~~~~~i~v~G~-~~~GKssL~~~l~~ 41 (202)
+..++.+||+|+|. .++|-+.+. .|..
T Consensus 19 ~~~k~~~kV~I~GA~G~Ig~~l~~-~La~ 46 (175)
T d7mdha1 19 KSWKKLVNIAVSGAAGMISNHLLF-KLAS 46 (175)
T ss_dssp --CCCCEEEEEETTTSHHHHHHHH-HHHH
T ss_pred hccCCCcEEEEECCCcHHHHHHHH-HHHc
Confidence 34567899999996 778877554 4443
|
| >d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Formyltetrahydrofolate synthetase species: Moorella thermoacetica [TaxId: 1525]
Probab=87.00 E-value=1.1 Score=34.08 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=59.0
Q ss_pred CCEEEEEEeCCC--------------------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhC
Q psy1315 92 TDGIIFVIDSTD--------------------VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG 151 (202)
Q Consensus 92 ~d~~ilv~d~~~--------------------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~ 151 (202)
.|++++|..+.- ...+.++.+.+..+.+. +.|+||++|+.....+.+...+.+..
T Consensus 319 P~~~VlVaTvRALK~HGG~~~~~l~~eNl~Al~~G~~NL~rHIeNi~~f----GlpvVVAIN~F~tDTd~Ei~~i~~~~- 393 (549)
T d1eg7a_ 319 PDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKF----GVPAVVAINAFPTDTEAELNLLYELC- 393 (549)
T ss_dssp CCEEEEEECHHHHHHTTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHTT----TCCEEEEEECCTTCCHHHHHHHHHHT-
T ss_pred CceEEEEeehhhhhhcCCCChHHcCcccHHHHHHHHHHHHHHHHhhhhc----CCCeEEEeccCCccchhHHHHHHHHH-
Confidence 789999875321 12455666666666554 89999999999755555555555533
Q ss_pred chhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 152 LYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 152 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
...++.+...-++-|.|-.+|.+.+++.+.+.
T Consensus 394 -----~~~g~~~a~~wa~GG~Ga~dLA~~Vv~a~e~~ 425 (549)
T d1eg7a_ 394 -----AKAGAEVALSWAKGGEGGLELARKVLQTLESR 425 (549)
T ss_dssp -----TTSEEEEECCTTTGGGGGHHHHHHHHHHHHHS
T ss_pred -----hhcCcceeeecccCccchHHHHHHHHHHHhcc
Confidence 44555554444667889999999999988654
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=86.87 E-value=0.22 Score=32.96 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=16.0
Q ss_pred EEEEEcCC-CCCHHHHHHHh
Q psy1315 21 HIVMLGLD-SAGKTTALYRL 39 (202)
Q Consensus 21 ~i~v~G~~-~~GKssL~~~l 39 (202)
++.|.|-. ||||||+.--|
T Consensus 3 ~~~i~gt~~GVGKTtvs~~L 22 (224)
T d1byia_ 3 RYFVTGTDTEVGKTVASCAL 22 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHH
Confidence 67889995 99999987666
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.67 E-value=1.4 Score=26.81 Aligned_cols=46 Identities=4% Similarity=-0.068 Sum_probs=27.6
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
..+.++|+ +.+ ++.+=|..+..+...+... +++|++.|-..|-...
T Consensus 69 ~~~~~~d~--I~I--DEaQFf~dl~~~~~~~~~~----~~~Viv~GLd~Df~~~ 114 (133)
T d1xbta1 69 QEALGVAV--IGI--DEGQFFPDIVEFCEAMANA----GKTVIVAALDGTFQRK 114 (133)
T ss_dssp HHHHTCSE--EEE--SSGGGCTTHHHHHHHHHHT----TCEEEEECCSBCTTSS
T ss_pred hhhcccce--EEe--ehhHHHHHHHHHHHHHHhc----CCcEEEEEeccccccC
Confidence 34456674 333 4434455555555555443 7999999988886543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=85.95 E-value=0.27 Score=28.39 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=25.1
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
+..+..-+|-|+|-.|+|-|+|+..|...-+
T Consensus 3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~ 33 (96)
T d1p3da1 3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGY 33 (96)
T ss_dssp CCCTTCCEEEEETTTSTTHHHHHHHHHHHTC
T ss_pred ccchhCCEEEEEEECHHHHHHHHHHHHhCCC
Confidence 3455677899999999999999888876544
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.78 E-value=0.15 Score=35.65 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=19.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.=|++++|++|+|||+|+..+...
T Consensus 66 ~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 66 RGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred CCceEeeccCCCCChHHHHHHHHhh
Confidence 3447899999999999998765443
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.66 E-value=0.25 Score=35.11 Aligned_cols=14 Identities=50% Similarity=0.729 Sum_probs=13.0
Q ss_pred EEEcCCCCCHHHHH
Q psy1315 23 VMLGLDSAGKTTAL 36 (202)
Q Consensus 23 ~v~G~~~~GKssL~ 36 (202)
+++|-+|+|||||-
T Consensus 18 lfFGLSGTGKTTLs 31 (313)
T d2olra1 18 VFFGLSGTGKTTLS 31 (313)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEEccCCCCcccce
Confidence 69999999999976
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=82.81 E-value=0.26 Score=35.09 Aligned_cols=15 Identities=47% Similarity=0.663 Sum_probs=13.6
Q ss_pred EEEEcCCCCCHHHHH
Q psy1315 22 IVMLGLDSAGKTTAL 36 (202)
Q Consensus 22 i~v~G~~~~GKssL~ 36 (202)
-+++|-+|+|||||-
T Consensus 17 alffGLSGTGKTTLs 31 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEECTTSCHHHHT
T ss_pred EEEEccCCCCccccc
Confidence 589999999999975
|
| >d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Psd-95 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.79 E-value=0.53 Score=30.97 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=15.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
--|+++|+ ||+|+.++|+..
T Consensus 10 Rpivi~Gp---~K~ti~~~L~~~ 29 (199)
T d1kjwa2 10 RPIIILGP---TKDRANDDLLSE 29 (199)
T ss_dssp CCEEEEST---THHHHHHHHHHH
T ss_pred CCEEEECc---CHHHHHHHHHHh
Confidence 34677886 699999999853
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.48 E-value=0.43 Score=31.82 Aligned_cols=65 Identities=8% Similarity=0.055 Sum_probs=39.9
Q ss_pred ceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLP 138 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~ 138 (202)
.+.+.++|+|+... ......+..+|.++++...+. .++....+........ +.+ +-+|.|+.+..
T Consensus 109 ~~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~~~~~~----~~~~~~iv~N~~~~~ 174 (232)
T d1hyqa_ 109 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERL----GTKVLGVVVNRITTL 174 (232)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHH----TCEEEEEEEEEECTT
T ss_pred ccceeeeccccccc--chhHHHhhhhheeeeeccccc-cchhhhhhhhhhhhhc----ccccccccccccccc
Confidence 34578899987643 344455667999999998753 4455544443333332 333 44778998754
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.45 E-value=0.51 Score=29.64 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=16.7
Q ss_pred CcccEEEEEcC-CCCCHHHHHH
Q psy1315 17 SSSVHIVMLGL-DSAGKTTALY 37 (202)
Q Consensus 17 ~~~~~i~v~G~-~~~GKssL~~ 37 (202)
++++||+++|. .++|.+....
T Consensus 1 s~p~KV~IiGA~G~VG~~la~~ 22 (154)
T d5mdha1 1 SEPIRVLVTGAAGQIAYSLLYS 22 (154)
T ss_dssp CCCEEEEESSTTSHHHHTTHHH
T ss_pred CCceEEEEECCCCHHHHHHHHH
Confidence 46889999995 8899986553
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=81.89 E-value=0.45 Score=30.97 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=13.1
Q ss_pred EEEEEcCCCCCHHHHH
Q psy1315 21 HIVMLGLDSAGKTTAL 36 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~ 36 (202)
++++++++|+|||...
T Consensus 25 n~lv~~pTGsGKT~i~ 40 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIA 40 (200)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred CeEEEeCCCCcHHHHH
Confidence 4789999999999643
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=81.69 E-value=0.26 Score=29.83 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=14.1
Q ss_pred CcccEEEEEcCCCCCHHH
Q psy1315 17 SSSVHIVMLGLDSAGKTT 34 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKss 34 (202)
.+.-.+++.+++|+|||.
T Consensus 5 ~~~~~~il~~~tGsGKT~ 22 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTR 22 (140)
T ss_dssp STTCEEEECCCTTSSTTT
T ss_pred HcCCcEEEEcCCCCChhH
Confidence 345567888999999993
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.48 E-value=0.33 Score=34.60 Aligned_cols=15 Identities=47% Similarity=0.667 Sum_probs=13.5
Q ss_pred EEEEcCCCCCHHHHH
Q psy1315 22 IVMLGLDSAGKTTAL 36 (202)
Q Consensus 22 i~v~G~~~~GKssL~ 36 (202)
-+++|-+|+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 469999999999986
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=81.14 E-value=1.2 Score=27.77 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=17.9
Q ss_pred CcccEEEEEcC-CCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGL-DSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~-~~~GKssL~~~l~~~ 42 (202)
++++||+++|. .++|-+.. ..+...
T Consensus 2 ~~p~KV~IiGA~G~VG~~~a-~~l~~~ 27 (154)
T d1y7ta1 2 KAPVRVAVTGAAGQIGYSLL-FRIAAG 27 (154)
T ss_dssp CCCEEEEESSTTSHHHHHHH-HHHHTT
T ss_pred CCCCEEEEECCCCHHHHHHH-HHHHhc
Confidence 46789999996 78997654 444433
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.40 E-value=0.56 Score=31.23 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=14.5
Q ss_pred EEEE-cCCCCCHHHHHHHh
Q psy1315 22 IVML-GLDSAGKTTALYRL 39 (202)
Q Consensus 22 i~v~-G~~~~GKssL~~~l 39 (202)
|+|. +..|+||||+.-.|
T Consensus 5 Iav~~~kGGvGKTtia~nL 23 (237)
T d1g3qa_ 5 ISIVSGKGGTGKTTVTANL 23 (237)
T ss_dssp EEEECSSTTSSHHHHHHHH
T ss_pred EEEECCCCCCcHHHHHHHH
Confidence 6677 55799999998776
|