Psyllid ID: psy13169
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 129 | ||||||
| 328708802 | 1249 | PREDICTED: transcription initiation fact | 0.852 | 0.088 | 0.603 | 7e-36 | |
| 328708804 | 1215 | PREDICTED: transcription initiation fact | 0.852 | 0.090 | 0.603 | 1e-35 | |
| 345483769 | 1227 | PREDICTED: transcription initiation fact | 0.891 | 0.093 | 0.558 | 1e-35 | |
| 332022415 | 1205 | Transcription initiation factor TFIID su | 0.875 | 0.093 | 0.594 | 3e-35 | |
| 242003978 | 1197 | transcription initiation factor TFIID su | 0.860 | 0.092 | 0.614 | 3e-35 | |
| 340712189 | 1198 | PREDICTED: transcription initiation fact | 0.775 | 0.083 | 0.64 | 5e-35 | |
| 170044706 | 1222 | conserved hypothetical protein [Culex qu | 0.899 | 0.094 | 0.545 | 6e-35 | |
| 350413992 | 1189 | PREDICTED: transcription initiation fact | 0.775 | 0.084 | 0.64 | 8e-35 | |
| 307172277 | 1192 | Transcription initiation factor TFIID su | 0.775 | 0.083 | 0.63 | 9e-35 | |
| 157138541 | 607 | hypothetical protein AaeL_AAEL014023 [Ae | 0.899 | 0.191 | 0.528 | 1e-34 |
| >gi|328708802|ref|XP_003243802.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats.
Identities = 67/111 (60%), Positives = 89/111 (80%), Gaps = 1/111 (0%)
Query: 17 DGTLVDRNAHLFTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSE 76
DGT + + ++ + GVHFV+PEGDG+LV+R AH+FT ENS+RLWFPC+D+Y+E
Sbjct: 128 DGTSIKISVE-YSLEQPSGGVHFVIPEGDGSLVERRAHMFTMCFENSSRLWFPCVDSYAE 186
Query: 77 VCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLEI 127
CTW LEFTVDEN+TAVSCGDLIEVV PD+RRKT++YSL++P AP++ +
Sbjct: 187 PCTWDLEFTVDENMTAVSCGDLIEVVAAPDLRRKTYYYSLSMPTCAPNIAL 237
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328708804|ref|XP_001952652.2| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|345483769|ref|XP_001599737.2| PREDICTED: transcription initiation factor TFIID subunit 2-like [Nasonia vitripennis] | Back alignment and taxonomy information |
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| >gi|332022415|gb|EGI62723.1| Transcription initiation factor TFIID subunit 2 [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|242003978|ref|XP_002422931.1| transcription initiation factor TFIID subunit, putative [Pediculus humanus corporis] gi|212505824|gb|EEB10193.1| transcription initiation factor TFIID subunit, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|340712189|ref|XP_003394646.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|170044706|ref|XP_001849978.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167867753|gb|EDS31136.1| conserved hypothetical protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
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| >gi|350413992|ref|XP_003490174.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|307172277|gb|EFN63782.1| Transcription initiation factor TFIID subunit 2 [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|157138541|ref|XP_001664245.1| hypothetical protein AaeL_AAEL014023 [Aedes aegypti] gi|108869469|gb|EAT33694.1| AAEL014023-PA, partial [Aedes aegypti] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 129 | ||||||
| ZFIN|ZDB-GENE-030131-3207 | 1191 | taf2 "TAF2 RNA polymerase II, | 0.875 | 0.094 | 0.504 | 1.4e-28 | |
| UNIPROTKB|E1BY72 | 553 | E1BY72 "Uncharacterized protei | 0.790 | 0.184 | 0.524 | 2.5e-28 | |
| UNIPROTKB|E2QT19 | 1202 | TAF2 "Uncharacterized protein" | 0.860 | 0.092 | 0.508 | 3.7e-28 | |
| UNIPROTKB|K7GP24 | 1100 | TAF2 "Uncharacterized protein" | 0.790 | 0.092 | 0.533 | 4.1e-28 | |
| UNIPROTKB|F1S282 | 1101 | TAF2 "Uncharacterized protein" | 0.790 | 0.092 | 0.533 | 4.2e-28 | |
| MGI|MGI:2443028 | 1104 | Taf2 "TAF2 RNA polymerase II, | 0.790 | 0.092 | 0.533 | 4.2e-28 | |
| UNIPROTKB|Q6P1X5 | 1199 | TAF2 "Transcription initiation | 0.790 | 0.085 | 0.533 | 4.8e-28 | |
| UNIPROTKB|F1MME0 | 1202 | TAF2 "Uncharacterized protein" | 0.790 | 0.084 | 0.533 | 4.8e-28 | |
| UNIPROTKB|F6UTN8 | 1206 | TAF2 "Uncharacterized protein" | 0.790 | 0.084 | 0.533 | 4.8e-28 | |
| UNIPROTKB|F1LNY6 | 1200 | Taf2 "Protein Taf2" [Rattus no | 0.790 | 0.085 | 0.533 | 1e-27 |
| ZFIN|ZDB-GENE-030131-3207 taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 1.4e-28, P = 1.4e-28
Identities = 57/113 (50%), Positives = 82/113 (72%)
Query: 15 EGDGTLVDRNAHLFTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTY 74
+GD V + F+ G+HFVVP+ +G + +R AH+F+ ++NS+R WFPC+D+Y
Sbjct: 126 QGDEMKVMKVYIEFSLDQPKGGLHFVVPDVEGNMAERAAHVFSFGNQNSSRFWFPCVDSY 185
Query: 75 SEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLEI 127
SE+CTW+LEFTVD ++ AVSCGDL+E VYT DMR+KT+ Y L IP AP++ +
Sbjct: 186 SELCTWKLEFTVDASMVAVSCGDLVETVYTHDMRKKTYHYMLPIPTAAPNISM 238
|
|
| UNIPROTKB|E1BY72 E1BY72 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2QT19 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|K7GP24 TAF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S282 TAF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| MGI|MGI:2443028 Taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6P1X5 TAF2 "Transcription initiation factor TFIID subunit 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MME0 TAF2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6UTN8 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LNY6 Taf2 "Protein Taf2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 129 | |||
| cd09839 | 507 | cd09839, M1_TAF2, TATA binding protein (TBP) assoc | 8e-35 | |
| cd09595 | 407 | cd09595, M1, Peptidase M1 family contains aminopep | 6e-13 | |
| cd09603 | 415 | cd09603, M1_APN_4, Peptidase M1 family Aminopeptid | 1e-09 | |
| pfam01433 | 390 | pfam01433, Peptidase_M1, Peptidase family M1 | 3e-06 | |
| COG0308 | 859 | COG0308, PepN, Aminopeptidase N [Amino acid transp | 4e-05 | |
| cd09599 | 442 | cd09599, M1_LTA4H, Peptidase M1 family contains le | 3e-04 |
| >gnl|CDD|189018 cd09839, M1_TAF2, TATA binding protein (TBP) associated factor 2 | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 8e-35
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 5/90 (5%)
Query: 36 GVHFVVPEGDGTLVDRNAHLFTCPHE-NSARLWFPCIDTYSEVCTWRLEFTVDENLTAVS 94
G+HFV P+ + +R H+FT SAR WFPC+D S++CTW LEFTV N+ AVS
Sbjct: 131 GLHFVGPDPEA---ERYPHVFTYNSIHGSARCWFPCVDDPSQLCTWELEFTVPANMVAVS 187
Query: 95 CGDLIEVVY-TPDMRRKTFFYSLNIPAPAP 123
GDL+E VY T DMR+KT+ Y+L +P A
Sbjct: 188 SGDLLEQVYDTEDMRKKTYHYALTVPTAAQ 217
|
This family includes TATA binding protein (TBP) associated factor 2 (TAF2, TBP-associated factor TAFII150, transcription initiation factor TFIID subunit 2, RNA polymerase II TBP-associated factor subunit B), and has homology to the aminopeptidase N (APN) subfamily, belonging to the M1 gluzincin family. TAF2 is part of the TFIID multidomain subunit complex essential for transcription of most protein-encoded genes by RNA polymerase II. TAF2 is known to interact with the initiator element (Inr) found at the transcription start site of many genes, thus possibly playing a key role in promoter binding as well as start-site selection. Image analysis has shown TAF2 to form a complex with TAF1 and TBP, inferring its role in promoter recognition. Peptidases in the M1 family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. TAF2, however, does not seem to contain any of the active site residues. Length = 507 |
| >gnl|CDD|189002 cd09595, M1, Peptidase M1 family contains aminopeptidase N and leukotriene A4 hydrolase | Back alignment and domain information |
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| >gnl|CDD|189010 cd09603, M1_APN_4, Peptidase M1 family Aminopeptidase N | Back alignment and domain information |
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| >gnl|CDD|216501 pfam01433, Peptidase_M1, Peptidase family M1 | Back alignment and domain information |
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| >gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and metabolism] | Back alignment and domain information |
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| >gnl|CDD|189006 cd09599, M1_LTA4H, Peptidase M1 family contains leukotriene A4 hydrolase | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 129 | |||
| TIGR02411 | 601 | leuko_A4_hydro leukotriene A-4 hydrolase/aminopept | 99.95 | |
| TIGR02412 | 831 | pepN_strep_liv aminopeptidase N, Streptomyces livi | 99.94 | |
| PF01433 | 390 | Peptidase_M1: Peptidase family M1 This is family M | 99.94 | |
| KOG1932|consensus | 1180 | 99.9 | ||
| KOG1047|consensus | 613 | 99.89 | ||
| PRK14015 | 875 | pepN aminopeptidase N; Provisional | 99.87 | |
| TIGR02414 | 863 | pepN_proteo aminopeptidase N, Escherichia coli typ | 99.83 | |
| KOG1046|consensus | 882 | 99.82 | ||
| COG0308 | 859 | PepN Aminopeptidase N [Amino acid transport and me | 99.81 |
| >TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-28 Score=205.78 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=100.1
Q ss_pred ccEEEEcCCCCCCcce-EEEEEEEeCCCCceeEEEccCCCCccCCCccEEEeccCCCCcCeEEeeCCCCCCceeEEEEEE
Q psy13169 7 CGVHFVVPEGDGTLVD-RNAHLFTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFT 85 (129)
Q Consensus 7 ~~L~I~lp~~~~~~~~-~i~I~y~~~~p~~Gl~f~~~~~~~~~~~~~~~~~T~~q~~~Ar~wfPc~D~P~~Kat~~l~v~ 85 (129)
+.|.|.||..+..+.. +|+|.|++.....|++|..++++ .+++.+|+||||||++||+||||+|+|++|++|+++|+
T Consensus 79 ~~L~I~l~~~l~~g~~~~l~I~Y~~~~~~~gl~~~~~~~t--~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~ 156 (601)
T TIGR02411 79 SPLTISLPIATSKNKELVLNISFSTTPKCTALQWLTPEQT--SGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVE 156 (601)
T ss_pred CeEEEEeCCccCCCceEEEEEEEeecCCCceeEEeccccc--CCCCCCEEEECCcccchheeeeecCCcccceEEEEEEe
Confidence 4699999998876654 99999997667789999998764 34567999999999999999999999999999999999
Q ss_pred EcCCCeEeecCeeeeeEEecCCCcEEEEEEcCCCCCcceEeee
Q psy13169 86 VDENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLEIY 128 (129)
Q Consensus 86 vp~~~~avsnG~l~~~~~~~~~~~~t~~f~~~~P~s~yli~fa 128 (129)
+| +.|++||.++++. . ++..+|+|++++|||+||||||
T Consensus 157 ~P--~~av~sg~~~~~~--~-~~~~~~~F~~t~pmptYLia~a 194 (601)
T TIGR02411 157 SP--LPVLMSGIPDGET--S-NDPGKYLFKQKVPIPAYLIALA 194 (601)
T ss_pred eC--cceeccCCccccc--c-CCCceEEEEeCCCcchhhheee
Confidence 99 9999999876544 2 3456899999999999999997
|
Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known. |
| >TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type | Back alignment and domain information |
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| >PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification | Back alignment and domain information |
|---|
| >KOG1932|consensus | Back alignment and domain information |
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| >KOG1047|consensus | Back alignment and domain information |
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| >PRK14015 pepN aminopeptidase N; Provisional | Back alignment and domain information |
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| >TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type | Back alignment and domain information |
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| >KOG1046|consensus | Back alignment and domain information |
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| >COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 129 | |||
| 3b7s_A | 616 | Leukotriene A-4 hydrolase; transition state, analo | 1e-05 | |
| 3cia_A | 605 | Cold-active aminopeptidase; psychrohilic, hydrolas | 1e-04 |
| >3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide, hydrolysis, hydrolase, leukotriene biosynthesis, metal-binding, metalloprotease; 1.47A {Homo sapiens} SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L* 2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ... Length = 616 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-05
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F ++S + ++ PE T + +LF+ R PC DT S T+ E +V
Sbjct: 112 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 169
Query: 88 ENLTAVSCGDLI-EVVYTPDMRRKTFFYSLNIPAPA 122
+ L A+ E D RK + + +P P
Sbjct: 170 KELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPC 205
|
| >3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Length = 605 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 129 | |||
| 3u9w_A | 608 | Leukotriene A-4 hydrolase; hydrolase-hydrolase inh | 99.95 | |
| 4fke_A | 909 | Aminopeptidase N; zinc aminopeptidase, hydrolase; | 99.93 | |
| 3se6_A | 967 | Endoplasmic reticulum aminopeptidase 2; thermolysi | 99.93 | |
| 3cia_A | 605 | Cold-active aminopeptidase; psychrohilic, hydrolas | 99.92 | |
| 2xq0_A | 632 | LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B | 99.92 | |
| 2xdt_A | 897 | Endoplasmic reticulum aminopeptidase 1; glycoprote | 99.91 | |
| 3ebh_A | 889 | PFA-M1, M1 family aminopeptidase; hydrolase, metal | 99.9 | |
| 1z5h_A | 780 | Tricorn protease interacting factor F3; zinc amino | 99.89 | |
| 2gtq_A | 867 | Aminopeptidase N; alanine aminopeptidase, M1 famil | 99.87 | |
| 3b34_A | 891 | Aminopeptidase N; protease, hydrolase, thermolysin | 99.86 |
| >3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-29 Score=209.00 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=105.8
Q ss_pred cEEEEcCCCCCCcce-EEEEEEEeCCCCceeEEEccCCCCccCCCccEEEeccCCCCcCeEEeeCCCCCCceeEEEEEEE
Q psy13169 8 GVHFVVPEGDGTLVD-RNAHLFTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTV 86 (129)
Q Consensus 8 ~L~I~lp~~~~~~~~-~i~I~y~~~~p~~Gl~f~~~~~~~~~~~~~~~~~T~~q~~~Ar~wfPc~D~P~~Kat~~l~v~v 86 (129)
.|+|.||..+.++.. +|+|+|++.....|++|..++++ .+++.++++||+||.+||+||||+|+|++||+|+++|++
T Consensus 83 ~l~I~l~~~l~~g~~~~l~I~y~~~~~~~~~~~~~~~~~--~g~~~~~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~ 160 (608)
T 3u9w_A 83 PMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPEQT--SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSV 160 (608)
T ss_dssp EEEEEEEEEECTTCEEEEEEEEECCTTCTTEEEECGGGS--SSSSSCEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEEE
T ss_pred eEEEEcCCCCCCCCEEEEEEEEEEEcCCCceeeeccccc--CCCcceEEEEcccCCCCCEEEEecCccceeEEEEEEeeC
Confidence 599999988777766 99999998778899999988765 345789999999999999999999999999999999999
Q ss_pred cCCCeEeecCeeeeeEEec-CCCcEEEEEEcCCCCCcceEeee
Q psy13169 87 DENLTAVSCGDLIEVVYTP-DMRRKTFFYSLNIPAPAPSLEIY 128 (129)
Q Consensus 87 p~~~~avsnG~l~~~~~~~-~~~~~t~~f~~~~P~s~yli~fa 128 (129)
|++++|+|||.+.++.... ++++++|+|.+++|||+||+|||
T Consensus 161 p~~~~alsng~~~~~~~~~~~~~~~~~~f~~t~pmstYL~a~~ 203 (608)
T 3u9w_A 161 PKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALV 203 (608)
T ss_dssp ETTSEEEESSEEEEEEECTTCTTEEEEEEEEEEEECGGGCCEE
T ss_pred CcceeeeeeccccceeeccCCCCeEEEEEEecCCcccEEEEEE
Confidence 9999999999887765433 45688899999999999999997
|
| >4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A* | Back alignment and structure |
|---|
| >3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A* | Back alignment and structure |
|---|
| >3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
| >2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* | Back alignment and structure |
|---|
| >3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* | Back alignment and structure |
|---|
| >1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* | Back alignment and structure |
|---|
| >2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 129 | ||||
| d3b7sa2 | 208 | b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-term | 7e-08 |
| >d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 208 | Back information, alignment and structure |
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class: All beta proteins fold: Leukotriene A4 hydrolase N-terminal domain superfamily: Leukotriene A4 hydrolase N-terminal domain family: Leukotriene A4 hydrolase N-terminal domain domain: Leukotriene A4 hydrolase N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (110), Expect = 7e-08
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F ++S + ++ PE T + +LF+ R PC DT S T+ E +V
Sbjct: 106 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 163
Query: 88 ENLTAVSCGDLI-EVVYTPDMRRKTFFYSLNIPAPA 122
+ L A+ E D RK + + +P P
Sbjct: 164 KELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPC 199
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Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 129 | |||
| d3b7sa2 | 208 | Leukotriene A4 hydrolase N-terminal domain {Human | 100.0 |
| >d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Leukotriene A4 hydrolase N-terminal domain superfamily: Leukotriene A4 hydrolase N-terminal domain family: Leukotriene A4 hydrolase N-terminal domain domain: Leukotriene A4 hydrolase N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.9e-35 Score=214.34 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=104.7
Q ss_pred cEEEEcCCCCCCcce-EEEEEEEeCCCCceeEEEccCCCCccCCCccEEEeccCCCCcCeEEeeCCCCCCceeEEEEEEE
Q psy13169 8 GVHFVVPEGDGTLVD-RNAHLFTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTV 86 (129)
Q Consensus 8 ~L~I~lp~~~~~~~~-~i~I~y~~~~p~~Gl~f~~~~~~~~~~~~~~~~~T~~q~~~Ar~wfPc~D~P~~Kat~~l~v~v 86 (129)
.|.|.++..+..+.. .|+|.|++.....|++|..+... .+++.+++|||+|+.+||+||||||+|++||+|+|+|++
T Consensus 85 ~l~i~~~~~~~~g~~~~l~i~y~~~~~~~g~~~~~~~~~--~~~~~~~~~Tq~ep~~AR~~fPC~DeP~~Katf~l~i~~ 162 (208)
T d3b7sa2 85 PMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPEQT--SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSV 162 (208)
T ss_dssp EEEEEEEEEECTTCEEEEEEEEECCTTCTTEEEECGGGS--SSSSSCEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEEE
T ss_pred eeeeecccccCCCCEEEEEEEEEEecCCCCccEEeeecC--CCccceEEEEcCCCccceEEEEcCCCCCeeeEEEEEEEE
Confidence 588999887776755 99999997777899999887653 345678999999999999999999999999999999999
Q ss_pred cCCCeEeecCeeeeeEEec-CCCcEEEEEEcCCCCCcceEeee
Q psy13169 87 DENLTAVSCGDLIEVVYTP-DMRRKTFFYSLNIPAPAPSLEIY 128 (129)
Q Consensus 87 p~~~~avsnG~l~~~~~~~-~~~~~t~~f~~~~P~s~yli~fa 128 (129)
|++|+++|||.+.+++... ++++++|+|++++|||+||+||+
T Consensus 163 p~~~~~vsn~~~~~~~~~~~~~~~~~~~f~~t~pmstYL~af~ 205 (208)
T d3b7sa2 163 PKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALV 205 (208)
T ss_dssp ETTSEEEESSEEEEEEECTTCTTEEEEEEEEEEEECGGGCCEE
T ss_pred CCCCEEEeCCCcccceecccCCCcEEEEEeCCCCcchHheeEE
Confidence 9999999999988765433 46788999999999999999997
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