Psyllid ID: psy13204

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MSLKLQTLDWIKNLSDVLDTVNNSTGLEYFELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFELF
Secondary Structure (PSIPRED)
ccccHHHHHHHcccccHHcccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHcccccEEEEEccHHHHcccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHcccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHccHcHHHHHHHHHHHHHcccccEEEEEEEEccccccHcccccccHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHccccEEEEccccccccccccccccHHHHcccccHHHHHHHHHHHcccEEEEccccccHHHcc
Coil and Loop (DISEMBL)
MSLKLQTLDWIKNLSDVLDTVNNSTGLEYFELTLadadndateswysvtPEKVAQHIASRCkasdvvidgfcgcggnTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQgdffalapslqgdvvflsppwggpeyarssfsidnifpeqgggrRLFQVARgispnvgyylprtsdvfelf
Flexible Loop (DISEMBL)
MSLKLQTLDWIKNLSDVLDTVNNSTGLEYFELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARgispnvgyylprTSDVFELF
Low Complexity Region (SEG)
MSLKLQTLDWIKNLSDVLDTVNNSTGLEYFELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFELF
Disordered region (IsUnstruct)
****LQTLDWIKNLSDVLDTVNNSTGLEYFELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSD*****
Disordered Region (DISOPRED)
*SLKLQTLDWIKNLSDVLDTVNNSTGLEYFELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFELF
Disordered Region (DISEMBL)
MSLKLQTLDWIKNLSDVLDTVNNSTGLEYFELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFELF
Disordered Region (DISPRO)
*SLKLQTLDWIKNLSDVLDTVNNSTGLEYFELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF*LF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLKLQTLDWIKNLSDVLDTVNNSTGLEYFELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFELF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
P85107	850	Trimethylguanosine syntha	yes	N/A	0.746	0.165	0.544	4e-41
Q923W1	853	Trimethylguanosine syntha	yes	N/A	0.746	0.165	0.537	7e-41
Q96RS0	853	Trimethylguanosine syntha	yes	N/A	0.746	0.165	0.537	7e-40
Q09814	239	Trimethylguanosine syntha	yes	N/A	0.756	0.598	0.480	2e-30
Q12052	315	Trimethylguanosine syntha	yes	N/A	0.772	0.463	0.367	1e-19
Q2RFW1	283	Release factor glutamine	yes	N/A	0.470	0.314	0.290	2e-05
Q7NGN4	457	Uncharacterized RNA methy	yes	N/A	0.412	0.170	0.303	3e-05
Q9KF10	458	Uncharacterized RNA methy	yes	N/A	0.693	0.286	0.277	5e-05
Q32DK7	310	50S ribosomal protein L3	yes	N/A	0.634	0.387	0.276	8e-05
P39199	310	50S ribosomal protein L3	N/A	N/A	0.634	0.387	0.276	8e-05

>sp|P85107|TGS1_RAT Trimethylguanosine synthase OS=Rattus norvegicus GN=Tgs1 PE=1 SV=1

 Score =  167 bits (423), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/147 (54%), Positives = 108/147 (73%), Gaps = 6/147 (4%)

Query: 43  ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
           E W+SVTPEK+A+HIA R   S   D+++D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct: 661 EGWFSVTPEKIAEHIAGRVSQSFNCDIIVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 720

Query: 100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 158
           LA++NA VYGV+ KI+FI GDF  LAP L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct: 721 LARNNAEVYGVADKIEFICGDFLLLAPCLKADVVFLSPPWGGPDYATAETFDIRTMM--S 778

Query: 159 GGGRRLFQVARGISPNVGYYLPRTSDV 185
             G  +F++++ I+ N+ Y+LPR +DV
Sbjct: 779 PDGFEIFRLSQKITNNIVYFLPRNADV 805

Catalyzes the 2 serial methylation steps for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure. The enzyme is specific for guanine, and N7 methylation must precede N2 methylation. Hypermethylation of the m7G cap of U snRNAs leads to their concentration in nuclear foci, their colocalization with coilin and the formation of canonical Cajal bodies (CBs). Plays a role in transcriptional regulation.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q923W1|TGS1_MOUSE Trimethylguanosine synthase OS=Mus musculus GN=Tgs1 PE=1 SV=2

 Score =  166 bits (421), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 79/147 (53%), Positives = 108/147 (73%), Gaps = 6/147 (4%)

Query: 43  ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
           E W+SVTPEK+A+HIA R   +   DVV+D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct: 659 EGWFSVTPEKIAEHIAGRVSQAFRCDVVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 718

Query: 100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 158
           LA++NA VYG++ KI+FI GDF  LAP L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct: 719 LARNNAEVYGIADKIEFICGDFLLLAPCLKADVVFLSPPWGGPDYATAETFDIRTMM--S 776

Query: 159 GGGRRLFQVARGISPNVGYYLPRTSDV 185
             G  +F++++ I+ N+ Y+LPR +D+
Sbjct: 777 PDGFEIFRLSQKITNNIVYFLPRNADI 803

Catalyzes the 2 serial methylation steps for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure. The enzyme is specific for guanine, and N7 methylation must precede N2 methylation. Hypermethylation of the m7G cap of U snRNAs leads to their concentration in nuclear foci, their colocalization with coilin and the formation of canonical Cajal bodies (CBs). Plays a role in transcriptional regulation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q96RS0|TGS1_HUMAN Trimethylguanosine synthase OS=Homo sapiens GN=TGS1 PE=1 SV=3

 Score =  163 bits (412), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 79/147 (53%), Positives = 106/147 (72%), Gaps = 6/147 (4%)

Query: 43  ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
           E W+SVTPEK+A+HIA R   S   DVV+D FCG GGNTIQFA    +VI+IDIDP K+ 
Sbjct: 667 EGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIA 726

Query: 100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 158
           LA++NA VYG++ KI+FI GDF  LA  L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct: 727 LARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMM--S 784

Query: 159 GGGRRLFQVARGISPNVGYYLPRTSDV 185
             G  +F++++ I+ N+ Y+LPR +D+
Sbjct: 785 PDGFEIFRLSKKITNNIVYFLPRNADI 811

Catalyzes the 2 serial methylation steps for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure. The enzyme is specific for guanine, and N7 methylation must precede N2 methylation. Hypermethylation of the m7G cap of U snRNAs leads to their concentration in nuclear foci, their colocalization with coilin and the formation of canonical Cajal bodies (CBs). Plays a role in transcriptional regulation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q09814|TGS1_SCHPO Trimethylguanosine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tgs1 PE=1 SV=3

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 100/156 (64%), Gaps = 13/156 (8%)

Query: 43  ESWYSVTPEKVAQHIASRCK---ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
           +SWYSVTPEKVA  IA         +++ID F GCGGNTIQFA  C  VISI+IDP K+ 
Sbjct: 49  QSWYSVTPEKVAVAIAKSVVDFIQPELIIDAFSGCGGNTIQFAKYCP-VISIEIDPIKIA 107

Query: 100 LAQHNASVYGV-SHKIQFIQGDFFALAPSLQ-----GDVVFLSPPWGGPEYA-RSSFSID 152
           +A+HN  +YG+ S ++ FIQGD      SLQ       +VF+SPPWGGP Y+ ++ +S++
Sbjct: 108 MAKHNLEIYGIPSSRVTFIQGDVLDTFKSLQFAKDYRSLVFMSPPWGGPSYSGKTVYSLN 167

Query: 153 NIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEL 188
           ++ P       LF+ A  ISP V  +LPR +DV EL
Sbjct: 168 DLNPY--AFDVLFKEATRISPYVAAFLPRNTDVKEL 201

Catalyzes the two serial methylation steps for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure. The enzyme is specific for guanine, and N7 methylation must precede N2 methylation. Required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. Involved in nucleolar structural organization.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q12052|TGS1_YEAST Trimethylguanosine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TGS1 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 9/155 (5%)

Query: 43  ESWYSVTPEKVAQHIASRCKA----SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKL 98
           E W+SVTPE++A  +A+  KA    ++ ++D FCG GGNTIQFA     V  +D     +
Sbjct: 73  ELWFSVTPERIACFLANFVKACMPNAERILDVFCGGGGNTIQFAMQFPYVYGVDYSIEHI 132

Query: 99  RLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGPEYARSSFSIDN 153
                NA  YGV  +I   +G +  L        ++ D VF SPPWGGPEY R+      
Sbjct: 133 YCTAKNAQSYGVDDRIWLKRGSWKKLVSKQKLSKIKYDCVFGSPPWGGPEYLRNDVYDLE 192

Query: 154 IFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEL 188
              +  G  ++ +    +SPNV  +LPR SD+ +L
Sbjct: 193 QHLKPMGITKMLKSFLKLSPNVIMFLPRNSDLNQL 227

Catalyzes the two serial methylation steps for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure. The enzyme is specific for guanine, and N7 methylation must precede N2 methylation. Hypermethylates the m3G cap on TLC1 telomerase which affects telomere silencing and telomere length regulation. Required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. Involved in nucleolar structural organization.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2RFW1|PRMC_MOOTA Release factor glutamine methyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=prmC PE=3 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 51  EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVC----QKVISIDIDPAKLRLAQHNAS 106
           E V + +  R    +      CG G   I  +        +V + DI PA L +AQ NA 
Sbjct: 98  EVVVEAVLERLDPCESYTIADCGTGSGAIALSLAHYLPRARVYATDISPAALTVAQENAR 157

Query: 107 VYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 139
             G++ ++  +QGDF A    L+ D +  +PP+
Sbjct: 158 KLGLAARVTLLQGDFLAPLRGLKLDALVANPPY 190

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|Q7NGN4|Y3134_GLOVI Uncharacterized RNA methyltransferase gll3134 OS=Gloeobacter violaceus (strain PCC 7421) GN=gll3134 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 63  ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 122
           A   V+D +CG G  ++  A   + V+ I+     +  A+ NA + G+ +  +F+ G   
Sbjct: 315 AEQTVVDAYCGIGTLSLPLARAARAVVGIESHVRSVEQARQNARINGIEN-CRFLAGTVE 373

Query: 123 ALAPSLQGDVVFLSPPWGG 141
           AL P L+ D+V + PP  G
Sbjct: 374 ALLPDLRADIVVVDPPRKG 392

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH0687 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 13/144 (9%)

Query: 26  GLEYFELTLADAD-NDATESWYSVTPEKVA----QHIA-SRCKASDVVIDGFCGCGGNTI 79
           G EY   T+ D     +  S+Y V PE+      Q +  +    S+ VID +CG G  ++
Sbjct: 267 GEEYIYDTIGDIKFAISARSFYQVNPEQTKVLYDQALEFANLTGSETVIDAYCGIGTISL 326

Query: 80  QFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDVVF 134
             A   + V  ++I P  +  A+ NA + G ++ +QF  GD   + P      ++ DV+ 
Sbjct: 327 FLAQQAKHVYGVEIVPEAISDAKRNARLNGFAN-VQFAVGDAEKVMPWWYAQGVRADVIV 385

Query: 135 LSPPWGGPEYARSSFSIDNIFPEQ 158
           + PP  G + A    +I N+ P++
Sbjct: 386 VDPPRKGCDEALLK-TILNMKPDR 408

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q32DK7|PRMB_SHIDS 50S ribosomal protein L3 glutamine methyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=prmB PE=3 SV=2

 Score = 47.0 bits (110), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 10/130 (7%)

Query: 52  KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS 111
           K  QHI   C  S        GC      +A    +V ++DI P  L +A+ N   +G+ 
Sbjct: 131 KQPQHILDMCTGS--------GCIAIACAYAFPEAEVDAVDISPDALAVAEQNIEEHGLI 182

Query: 112 HKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQG--GGRRLFQVAR 169
           H +  I+ D F   P +Q D++  +PP+   E      +     PE G   G    ++ R
Sbjct: 183 HNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLKLTR 242

Query: 170 GISPNVGYYL 179
            I  N   YL
Sbjct: 243 RILGNAADYL 252

Specifically methylates the 50S ribosomal protein L3 on 'Gln-150'.

Shigella dysenteriae serotype 1 (strain Sd197) (taxid: 300267)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 5

>sp|P39199|PRMB_ECOLI 50S ribosomal protein L3 glutamine methyltransferase OS=Escherichia coli (strain K12) GN=prmB PE=1 SV=3

 Score = 47.0 bits (110), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 10/130 (7%)

Query: 52  KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS 111
           K  QHI   C  S        GC      +A    +V ++DI P  L +A+ N   +G+ 
Sbjct: 131 KQPQHILDMCTGS--------GCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLI 182

Query: 112 HKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQG--GGRRLFQVAR 169
           H +  I+ D F   P +Q D++  +PP+   E      +     PE G   G    ++ R
Sbjct: 183 HNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLKLTR 242

Query: 170 GISPNVGYYL 179
            I  N   YL
Sbjct: 243 RILGNAADYL 252

Specifically methylates the 50S ribosomal protein L3 on 'Gln-150'. Does not methylate the translation termination release factors RF1 and RF2.

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
384485281	407	hypothetical protein RO3G_02165 [Rhizopu	0.756	0.351	0.571	6e-47
350410802	1112	PREDICTED: hypothetical protein LOC10074	0.761	0.129	0.605	5e-46
383862993	1113	PREDICTED: uncharacterized protein LOC10	0.761	0.129	0.571	2e-45
307213126	978	Trimethylguanosine synthase-like protein	0.740	0.143	0.597	2e-45
193662159	248	PREDICTED: trimethylguanosine synthase-l	0.735	0.560	0.567	3e-45
332031558	1035	Trimethylguanosine synthase [Acromyrmex	0.767	0.140	0.560	5e-45
322802317	1030	hypothetical protein SINV_12301 [Solenop	0.767	0.140	0.560	5e-45
328782578	1110	PREDICTED: hypothetical protein LOC41023	0.761	0.129	0.578	7e-45
156548692	577	PREDICTED: hypothetical protein LOC10011	0.761	0.249	0.571	1e-44
307171691	1026	Trimethylguanosine synthase-like protein	0.767	0.141	0.547	2e-44

>gi|384485281|gb|EIE77461.1| hypothetical protein RO3G_02165 [Rhizopus delemar RA 99-880]

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 4/147 (2%)

Query: 43  ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 102
           E W+SVTPEK+A HI+ RC+ SDV+ID FCGCGGN+IQFA  C +VI+ID+DP KL  A+
Sbjct: 202 EGWFSVTPEKIASHISKRCQ-SDVIIDAFCGCGGNSIQFALSCNQVIAIDLDPVKLYCAR 260

Query: 103 HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGG 161
            NA +YGV HKI+FI GDFF LAP L+ DVVFLSPPWGGP Y  + +F++ ++ P  G  
Sbjct: 261 ENAKIYGVEHKIEFILGDFFQLAPKLKADVVFLSPPWGGPSYMNTETFNLKSMIPRDGA- 319

Query: 162 RRLFQVARGISPNVGYYLPRTSDVFEL 188
             +FQ+A  I+PN+ Y++PR +D  +L
Sbjct: 320 -HIFQIASSITPNIAYFVPRNTDPHQL 345

Source: Rhizopus delemar RA 99-880

Species: Rhizopus delemar

Genus: Rhizopus

Family: Rhizopodaceae

Order: Mucorales

Superkingdom: Eukaryota

>gi|350410802|ref|XP_003489145.1| PREDICTED: hypothetical protein LOC100748607 [Bombus impatiens]

 Score =  189 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 89/147 (60%), Positives = 109/147 (74%), Gaps = 3/147 (2%)

Query: 43   ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 102
            ESWYSVTPEK+AQHIA RCK  D VID FCG GGN IQFA  C++V +IDIDPAK+ +A+
Sbjct: 933  ESWYSVTPEKIAQHIAQRCKC-DTVIDAFCGAGGNAIQFAFTCERVFAIDIDPAKIEIAR 991

Query: 103  HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGG 161
            +NA VYGV  +I+FI GDF  LA  L  DVVFLSPPWGGPEYA++ +F ++NI     GG
Sbjct: 992  NNARVYGVEDRIEFIVGDFIKLASKLSADVVFLSPPWGGPEYAKNETFDLNNIM-HPIGG 1050

Query: 162  RRLFQVARGISPNVGYYLPRTSDVFEL 188
              LF +AR I+ +V Y+LPR  D  +L
Sbjct: 1051 VNLFNIARKITDHVAYFLPRNVDTMQL 1077

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862993|ref|XP_003706967.1| PREDICTED: uncharacterized protein LOC100882090 [Megachile rotundata]

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 3/147 (2%)

Query: 43   ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 102
            ESW+SVTPEK+A+HIA RCK  D +ID FCG GGN IQFA  C++V++IDIDP K+ LA+
Sbjct: 934  ESWFSVTPEKIAEHIAQRCKC-DTIIDAFCGAGGNAIQFAFTCERVLAIDIDPMKIELAR 992

Query: 103  HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGG 161
            +NA VYGV  +I+FI GDF  LAP L  DVVFLSPPWGGPEY ++ ++ ++NI     GG
Sbjct: 993  NNARVYGVDDRIEFIVGDFLKLAPKLAADVVFLSPPWGGPEYNKTETYDLNNIM-HPIGG 1051

Query: 162  RRLFQVARGISPNVGYYLPRTSDVFEL 188
              +F++A+GI+ +V Y+LPR  D  +L
Sbjct: 1052 TNVFKIAKGITDHVAYFLPRNVDTMQL 1078

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213126|gb|EFN88648.1| Trimethylguanosine synthase-like protein [Harpegnathos saltator]

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 86/144 (59%), Positives = 109/144 (75%), Gaps = 4/144 (2%)

Query: 43  ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 102
           ESWYSVTPE++A+ IA RCK  +++ID FCG GGNTIQFA  C KVI+IDIDP K+ LA+
Sbjct: 791 ESWYSVTPERIAKQIARRCKC-NIIIDAFCGAGGNTIQFALTCNKVIAIDIDPIKIELAK 849

Query: 103 HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGG 161
           HNA +YGV +KI+FI G+F  LAP L+ DVVFLSPPWGGP Y  S  F I+ IFP   GG
Sbjct: 850 HNAKIYGVDNKIEFIVGNFLELAPKLEADVVFLSPPWGGPGYLESLIFDIEWIFPV--GG 907

Query: 162 RRLFQVARGISPNVGYYLPRTSDV 185
           + +++ AR IS +V Y+LPR  ++
Sbjct: 908 KHVYKAARRISTSVAYFLPRNVNI 931

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193662159|ref|XP_001950779.1| PREDICTED: trimethylguanosine synthase-like [Acyrthosiphon pisum]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 114/141 (80%), Gaps = 2/141 (1%)

Query: 43  ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 102
           ESWYS TPE +++ IA RCK  D++IDGFCG G N+IQFA   +KVI+IDIDP K+ LA+
Sbjct: 67  ESWYSATPEVISRMIAERCKC-DLIIDGFCGAGSNSIQFALTSKKVIAIDIDPIKIELAR 125

Query: 103 HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYA-RSSFSIDNIFPEQGGG 161
           +NA VYGVS +I+FI GD++ALAP+L+ DVVFL+PPWGGP+Y+ +++F+ID+I P  GGG
Sbjct: 126 NNAKVYGVSDRIEFIIGDYYALAPTLKADVVFLAPPWGGPKYSQKTTFNIDDIMPNNGGG 185

Query: 162 RRLFQVARGISPNVGYYLPRT 182
           + L+++ R I+ N+ ++LP+ 
Sbjct: 186 KHLYELTRQITKNIAFFLPKN 206

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031558|gb|EGI71030.1| Trimethylguanosine synthase [Acromyrmex echinatior]

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 109/148 (73%), Gaps = 3/148 (2%)

Query: 43   ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 102
            ESW+SVTPE++A+ IA RC+  D +ID FCG G N IQFA  C++VI+IDIDP K+++A+
Sbjct: 857  ESWFSVTPEEIAKDIAERCRC-DTIIDAFCGAGSNAIQFAFTCERVIAIDIDPDKIKIAR 915

Query: 103  HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEY-ARSSFSIDNIFPEQGGG 161
            HNA +YGV  +I+FI GDF  LAP L  DVVFLSPPWGGP+Y  R  F +++I P   GG
Sbjct: 916  HNAGIYGVDDRIEFITGDFLQLAPQLVADVVFLSPPWGGPDYIKRKVFDLESIMP-PIGG 974

Query: 162  RRLFQVARGISPNVGYYLPRTSDVFELF 189
            R +F+ AR I+ +V YYLPR SD  ++ 
Sbjct: 975  RSIFEAARRITQHVAYYLPRNSDPLQII 1002

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802317|gb|EFZ22713.1| hypothetical protein SINV_12301 [Solenopsis invicta]

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 110/148 (74%), Gaps = 3/148 (2%)

Query: 43  ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 102
           ESW+SVTPE++A+ IA RC+  D +ID FCG G N+IQFA  C++VI+IDIDP K+++A+
Sbjct: 852 ESWFSVTPEEIAKDIAERCRC-DTIIDAFCGAGSNSIQFAFTCERVIAIDIDPNKIKIAR 910

Query: 103 HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEY-ARSSFSIDNIFPEQGGG 161
           HNA +YGV  +I+FI GDF  LAP L  DVVFLSPPWGGP+Y  R  F +++I P   GG
Sbjct: 911 HNAGIYGVDDRIEFITGDFLQLAPQLVADVVFLSPPWGGPDYIKRRVFDLESIIP-PIGG 969

Query: 162 RRLFQVARGISPNVGYYLPRTSDVFELF 189
           R +F+ AR I+ +V YYLPR SD  ++ 
Sbjct: 970 RSVFKAARRITQHVAYYLPRNSDPLQII 997

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782578|ref|XP_393721.4| PREDICTED: hypothetical protein LOC410239 [Apis mellifera]

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 85/147 (57%), Positives = 109/147 (74%), Gaps = 3/147 (2%)

Query: 43   ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 102
            ESW+SVTPEK+A+HIA RCK  D +ID FCG GGN IQFA  C++V++IDIDP K+ LA+
Sbjct: 931  ESWFSVTPEKIAEHIAERCKC-DTIIDAFCGAGGNAIQFAFTCERVLAIDIDPVKIELAR 989

Query: 103  HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGG 161
            +NA +YGV  +I+FI GDFF LA  L  DVVFLSPPWGGP YA++ +F ++NI     GG
Sbjct: 990  NNARIYGVDDRIEFIVGDFFTLASKLIADVVFLSPPWGGPGYAKNETFDLNNIM-HPIGG 1048

Query: 162  RRLFQVARGISPNVGYYLPRTSDVFEL 188
              LF +AR I+ +V Y+LPR  D  +L
Sbjct: 1049 ENLFNIARKITDHVAYFLPRNVDTMQL 1075

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548692|ref|XP_001602591.1| PREDICTED: hypothetical protein LOC100118684 [Nasonia vitripennis]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 3/147 (2%)

Query: 43  ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 102
           ESW+SVTPEKVA+HIA RC+  D++ID FCG GGN+I FA  C++V +IDIDP K+ +A+
Sbjct: 400 ESWFSVTPEKVAKHIAERCRC-DMLIDAFCGAGGNSISFAFTCERVYAIDIDPKKIEMAR 458

Query: 103 HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYAR-SSFSIDNIFPEQGGG 161
           HNA +YGV  +I+FI GDFF LA  L GDVVFLSPPWGGP Y +  SF I+NI  +  GG
Sbjct: 459 HNARIYGVEDRIEFIIGDFFCLAERLFGDVVFLSPPWGGPSYIQDKSFDIENIM-DPHGG 517

Query: 162 RRLFQVARGISPNVGYYLPRTSDVFEL 188
            +LF+V++ IS N+ Y+LP+  +  +L
Sbjct: 518 IKLFEVSKRISDNIAYFLPKNINTLQL 544

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171691|gb|EFN63426.1| Trimethylguanosine synthase-like protein [Camponotus floridanus]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 111/148 (75%), Gaps = 3/148 (2%)

Query: 43  ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 102
           ESW+SVTPE++A++IA RC+  D +ID FCG G N+IQFA  C++VI+IDIDP K+++A+
Sbjct: 848 ESWFSVTPEEIAKNIAERCRC-DTIIDAFCGAGSNSIQFAFTCERVIAIDIDPNKIKIAR 906

Query: 103 HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEY-ARSSFSIDNIFPEQGGG 161
           HNA +YGV  +I+FI GDF  LAP L  DVVFLSPPWGGP+Y  R  F++++I P   GG
Sbjct: 907 HNAGIYGVDDRIEFITGDFLQLAPQLVADVVFLSPPWGGPDYIKRKVFNLEDIMP-PVGG 965

Query: 162 RRLFQVARGISPNVGYYLPRTSDVFELF 189
             +F+ A+ I+ +V YYLPR SD  ++ 
Sbjct: 966 INVFKAAKEITEHVAYYLPRNSDPLQII 993

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
ZFIN|ZDB-GENE-070802-2	800	tgs1 "trimethylguanosine synth	0.761	0.18	0.533	3.5e-39
UNIPROTKB|I3LL53	842	LOC100621800 "Uncharacterized	0.751	0.168	0.557	5.4e-39
UNIPROTKB|F1RT52	852	TGS1 "Uncharacterized protein"	0.751	0.166	0.557	5.6e-39
RGD|1309953	850	Tgs1 "trimethylguanosine synth	0.746	0.165	0.544	3.2e-38
MGI|MGI:2151797	853	Tgs1 "trimethylguanosine synth	0.746	0.165	0.537	6.8e-38
FB|FBgn0260241	466	tatl "tat-like" [Drosophila me	0.740	0.300	0.510	1.9e-37
UNIPROTKB|Q96RS0	853	TGS1 "Trimethylguanosine synth	0.746	0.165	0.537	2.3e-37
UNIPROTKB|E2RCA5	853	TGS1 "Uncharacterized protein"	0.751	0.166	0.530	3.9e-37
UNIPROTKB|F1N1K9	854	TGS1 "Uncharacterized protein"	0.746	0.165	0.520	2.6e-35
UNIPROTKB|F1NL90	853	TGS1 "Uncharacterized protein"	0.751	0.166	0.496	1.9e-34

ZFIN|ZDB-GENE-070802-2 tgs1 "trimethylguanosine synthase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 426 (155.0 bits), Expect = 3.5e-39, P = 3.5e-39
 Identities = 80/150 (53%), Positives = 109/150 (72%)

Query:    43 ESWYSVTPEKVAQHIASR---CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
             E W+SVTPEK+A+HIA R   C  ++++ID FCG GGN IQFA   ++VI IDIDP +L 
Sbjct:   620 EGWFSVTPEKIAEHIALRVQDCFNTELIIDAFCGVGGNAIQFALTGKRVIGIDIDPVRLA 679

Query:   100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSS-FSIDNIFPEQ 158
             LAQHNA+VYGV  +I F+QGDF  LAP L+GD+VFLSPPWGGPEY  +  F+I  +    
Sbjct:   680 LAQHNAAVYGVEQRIDFLQGDFLQLAPHLRGDMVFLSPPWGGPEYLTADVFNIQTMMTPD 739

Query:   159 GGGRRLFQVARGISPNVGYYLPRTSDVFEL 188
             G    +F++++ IS N+ Y+LPR +D+ ++
Sbjct:   740 GF--EIFRLSKMISDNIVYFLPRNADMEQI 767

GO:0001510 "RNA methylation" evidence=IEA

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|I3LL53 LOC100621800 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 425 (154.7 bits), Expect = 5.4e-39, P = 5.4e-39
 Identities = 82/147 (55%), Positives = 109/147 (74%)

Query:    43 ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
             E W+SVTPEK+A+HIA R   S   D+V+D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct:   655 EGWFSVTPEKIAEHIAGRVSQSFQCDIVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 714

Query:   100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 158
             LA++NA VYGV+ KI+FIQGDF  LAP L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct:   715 LARNNAEVYGVADKIEFIQGDFLQLAPRLKADVVFLSPPWGGPDYATAETFDIRTMMAPD 774

Query:   159 GGGRRLFQVARGISPNVGYYLPRTSDV 185
             G    +F++++ I+ N+ Y+LPR +DV
Sbjct:   775 GYFE-IFRLSQMITNNIVYFLPRNADV 800

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

UNIPROTKB|F1RT52 TGS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 425 (154.7 bits), Expect = 5.6e-39, P = 5.6e-39
 Identities = 82/147 (55%), Positives = 109/147 (74%)

Query:    43 ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
             E W+SVTPEK+A+HIA R   S   D+V+D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct:   665 EGWFSVTPEKIAEHIAGRVSQSFQCDIVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 724

Query:   100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 158
             LA++NA VYGV+ KI+FIQGDF  LAP L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct:   725 LARNNAEVYGVADKIEFIQGDFLQLAPRLKADVVFLSPPWGGPDYATAETFDIRTMMAPD 784

Query:   159 GGGRRLFQVARGISPNVGYYLPRTSDV 185
             G    +F++++ I+ N+ Y+LPR +DV
Sbjct:   785 GYFE-IFRLSQMITNNIVYFLPRNADV 810

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

RGD|1309953 Tgs1 "trimethylguanosine synthase 1" [Rattus norvegicus (taxid:10116)]

 Score = 418 (152.2 bits), Expect = 3.2e-38, P = 3.2e-38
 Identities = 80/147 (54%), Positives = 108/147 (73%)

Query:    43 ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
             E W+SVTPEK+A+HIA R   S   D+++D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct:   661 EGWFSVTPEKIAEHIAGRVSQSFNCDIIVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 720

Query:   100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 158
             LA++NA VYGV+ KI+FI GDF  LAP L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct:   721 LARNNAEVYGVADKIEFICGDFLLLAPCLKADVVFLSPPWGGPDYATAETFDIRTMMSPD 780

Query:   159 GGGRRLFQVARGISPNVGYYLPRTSDV 185
             G    +F++++ I+ N+ Y+LPR +DV
Sbjct:   781 GF--EIFRLSQKITNNIVYFLPRNADV 805

GO:0001510 "RNA methylation" evidence=ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0036261 "7-methylguanosine cap hypermethylation" evidence=ISO

GO:0071164 "RNA trimethylguanosine synthase activity" evidence=IEA;ISO

MGI|MGI:2151797 Tgs1 "trimethylguanosine synthase homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 415 (151.1 bits), Expect = 6.8e-38, P = 6.8e-38
 Identities = 79/147 (53%), Positives = 108/147 (73%)

Query:    43 ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
             E W+SVTPEK+A+HIA R   +   DVV+D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct:   659 EGWFSVTPEKIAEHIAGRVSQAFRCDVVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 718

Query:   100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 158
             LA++NA VYG++ KI+FI GDF  LAP L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct:   719 LARNNAEVYGIADKIEFICGDFLLLAPCLKADVVFLSPPWGGPDYATAETFDIRTMMSPD 778

Query:   159 GGGRRLFQVARGISPNVGYYLPRTSDV 185
             G    +F++++ I+ N+ Y+LPR +D+
Sbjct:   779 GF--EIFRLSQKITNNIVYFLPRNADI 803

GO:0001510 "RNA methylation" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISA

GO:0005737 "cytoplasm" evidence=ISA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0036261 "7-methylguanosine cap hypermethylation" evidence=ISO

GO:0071164 "RNA trimethylguanosine synthase activity" evidence=ISO

FB|FBgn0260241 tatl "tat-like" [Drosophila melanogaster (taxid:7227)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 75/147 (51%), Positives = 108/147 (73%)

Query:    43 ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 102
             ESW+SVTPEK+A+  A R  A DV++D FCGCGGN IQFA  C +VI++DID  KL +A+
Sbjct:   279 ESWFSVTPEKIAKQTARRL-ACDVIVDAFCGCGGNAIQFANTCGRVIAVDIDAEKLAMAK 337

Query:   103 HNASVYGVSHKIQFIQGDF--FALAPSLQGDVVFLSPPWGGPEYAR-SSFSIDN-IFPEQ 158
             HNA +YGV+HKI+FI  DF  FA +  L+ +VVFLSPPWGGP+Y + ++F I+  + P  
Sbjct:   338 HNAGIYGVAHKIEFIHADFLQFAASTKLRPNVVFLSPPWGGPDYQKQATFDIETGLLPV- 396

Query:   159 GGGRRLFQVARGISPNVGYYLPRTSDV 185
              G  +L Q++R ++ +V ++LPR +++
Sbjct:   397 -GASQLMQLSRSLASDVAFFLPRNANM 422

GO:0008283 "cell proliferation" evidence=NAS

GO:0008173 "RNA methyltransferase activity" evidence=ISS

GO:0001510 "RNA methylation" evidence=IEA

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q96RS0 TGS1 "Trimethylguanosine synthase" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 2.3e-37, P = 2.3e-37
 Identities = 79/147 (53%), Positives = 106/147 (72%)

Query:    43 ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
             E W+SVTPEK+A+HIA R   S   DVV+D FCG GGNTIQFA    +VI+IDIDP K+ 
Sbjct:   667 EGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIA 726

Query:   100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 158
             LA++NA VYG++ KI+FI GDF  LA  L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct:   727 LARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPD 786

Query:   159 GGGRRLFQVARGISPNVGYYLPRTSDV 185
             G    +F++++ I+ N+ Y+LPR +D+
Sbjct:   787 GF--EIFRLSKKITNNIVYFLPRNADI 811

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000387 "spliceosomal snRNP assembly" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0034660 "ncRNA metabolic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0022613 "ribonucleoprotein complex biogenesis" evidence=IC

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IC

GO:0071167 "ribonucleoprotein complex import into nucleus" evidence=IC

GO:0001510 "RNA methylation" evidence=IDA

GO:0071164 "RNA trimethylguanosine synthase activity" evidence=IDA

GO:0036261 "7-methylguanosine cap hypermethylation" evidence=IDA

UNIPROTKB|E2RCA5 TGS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 408 (148.7 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 78/147 (53%), Positives = 107/147 (72%)

Query:    43 ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
             E W+SVTPEK+A+HIA R   S   D+V+D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct:   666 EGWFSVTPEKIAEHIAGRVSQSFKCDIVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 725

Query:   100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 158
             LA++NA VYG++ KI+FI GDF  LA  L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct:   726 LARNNAEVYGIADKIEFICGDFLLLASHLKADVVFLSPPWGGPDYATAETFDIRTMMSPD 785

Query:   159 GGGRRLFQVARGISPNVGYYLPRTSDV 185
             G    +F++++ I+ N+ Y+LPR +D+
Sbjct:   786 GYFE-IFRLSQKITNNIVYFLPRNADI 811

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

UNIPROTKB|F1N1K9 TGS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 391 (142.7 bits), Expect = 2.6e-35, P = 2.6e-35
 Identities = 76/146 (52%), Positives = 102/146 (69%)

Query:    43 ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
             E W+SVTPEK+A+HIA R   S     ++D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct:   667 EGWFSVTPEKIAEHIAGRVSQSLESGTIVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 726

Query:   100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSS-FSIDNIFPEQ 158
             LA++NA +YGV  KI+FI GDF  LA SL+ DVVFLSPPWGGP+YA +  F I  +    
Sbjct:   727 LARNNAEIYGVVDKIEFICGDFLQLASSLKADVVFLSPPWGGPDYATAEIFDISTMMSPD 786

Query:   159 GGGRRLFQVARGISPNVGYYLPRTSD 184
                  +F++A+ I+ N+ ++LPR +D
Sbjct:   787 STFE-IFRLAQKITNNIVFFLPRNAD 811

GO:0071164 "RNA trimethylguanosine synthase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

UNIPROTKB|F1NL90 TGS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 383 (139.9 bits), Expect = 1.9e-34, P = 1.9e-34
 Identities = 73/147 (49%), Positives = 103/147 (70%)

Query:    43 ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
             E W+SVTPEK+A+HIA R   S   + ++D FCG GGN IQFA   ++VI++DIDP KL 
Sbjct:   705 EGWFSVTPEKIAEHIAVRVAQSFNCNTIVDAFCGVGGNAIQFALTSKRVIAVDIDPEKLS 764

Query:   100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSS-FSIDNIFPEQ 158
             LA+ NA VYGV+++I+F+ GDF  LA  L+ DVVFLSPPWGGP+YA +  F I  +    
Sbjct:   765 LARSNAEVYGVANQIEFVCGDFMVLAADLKADVVFLSPPWGGPDYATAEIFDIQTMICPD 824

Query:   159 GGGRRLFQVARGISPNVGYYLPRTSDV 185
             G   ++  +++ I+ N+ Y+LPR +D+
Sbjct:   825 GYPFKVV-LSKKITNNIVYFLPRNTDI 850

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0071164 "RNA trimethylguanosine synthase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q923W1	TGS1_MOUSE	2, ., 1, ., 1, ., -	0.5374	0.7460	0.1652	yes	N/A
P85107	TGS1_RAT	2, ., 1, ., 1, ., -	0.5442	0.7460	0.1658	yes	N/A
Q96RS0	TGS1_HUMAN	2, ., 1, ., 1, ., -	0.5374	0.7460	0.1652	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	189
pfam09445	165	pfam09445, Methyltransf_15, RNA cap guanine-N2 met	3e-45
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	9e-11
pfam01170	172	pfam01170, UPF0020, Putative RNA methylase family	8e-10
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	6e-08
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-07
COG2265	432	COG2265, TrmA, SAM-dependent methyltransferases re	3e-07
COG1092	393	COG1092, COG1092, Predicted SAM-dependent methyltr	6e-07
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	1e-06
COG0116	381	COG0116, COG0116, Predicted N6-adenine-specific DN	2e-06
COG2520	341	COG2520, COG2520, Predicted methyltransferase [Gen	2e-06
TIGR00536	284	TIGR00536, hemK_fam, HemK family putative methylas	3e-06
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	9e-06
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	1e-05
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	2e-05
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	4e-05
TIGR00479	431	TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransf	6e-05
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	1e-04
pfam02475	199	pfam02475, Met_10, Met-10+ like-protein	1e-04
PTZ00338	294	PTZ00338, PTZ00338, dimethyladenosine transferase-	3e-04
PRK11783	702	PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransfera	4e-04
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	4e-04
TIGR00537	179	TIGR00537, hemK_rel_arch, HemK-related putative me	4e-04
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	5e-04
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	7e-04
TIGR01177	329	TIGR01177, TIGR01177, TIGR01177 family protein	0.001
TIGR03533	284	TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m	0.001
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	0.002
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	0.003
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	0.003
COG1041	347	COG1041, COG1041, Predicted DNA modification methy	0.004
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	0.004
COG0030	259	COG0030, KsgA, Dimethyladenosine transferase (rRNA	0.004
PRK11036	255	PRK11036, PRK11036, putative S-adenosyl-L-methioni	0.004
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	0.004
TIGR02085	374	TIGR02085, meth_trns_rumB, 23S rRNA (uracil-5-)-me	0.004

>gnl|CDD|220246 pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase

 Score =  146 bits (371), Expect = 3e-45
 Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 7/129 (5%)

Query: 66  VVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 125
           +++D FCG GGNTIQFA V   VI IDI+P  L  AQHNA VYGVS +I FI GD+F L 
Sbjct: 3   IILDVFCGAGGNTIQFANVFCSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELL 62

Query: 126 PSLQG-----DVVFLSPPWGGPEYARSS-FSIDNIFPEQGGGRRLFQVARGISPNVGYYL 179
             L+      D VFLSPPWGGP Y R + + ++    +  G  +L + +  IS N+  +L
Sbjct: 63  AKLKFGKIPYDCVFLSPPWGGPSYKRQNVYDLEKKL-KPYGLYQLLKESTEISKNIILFL 121

Query: 180 PRTSDVFEL 188
           PR SD+ +L
Sbjct: 122 PRNSDLNQL 130

RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyze methylation of the exocyclic N2 amine of 7-methylguanosine. Length = 165

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 56.3 bits (136), Expect = 9e-11
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 64  SDVVIDGFCGCGGNTIQFAAVCQK--VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 121
            D V+D   G G   +  A       V+ +++DP    LA+   ++ G++ +++ + GD 
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 122 FALAPSLQG--DVVFLSPPWG 140
             L     G  D+V  +PP+G
Sbjct: 61  RELLELPDGSFDLVLGNPPYG 81

This family contains methyltransferase domains. Length = 117

>gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 59  SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISI---DIDPAKLRLAQHNASVYGVSHKIQ 115
           +  K  D ++D  CG G   I+ A +   +  +   DID   ++ A+ NA   GV  KI+
Sbjct: 24  AGWKPGDPLLDPMCGSGTILIEAALMGANIAPLYGSDIDWRMVQGARINAENAGVGDKIE 83

Query: 116 FIQGDFFAL-APSLQGDVVFLSPPWG 140
           F+Q D   L   +   D +  +PP+G
Sbjct: 84  FVQADAAKLPLLNGSVDAIVTNPPYG 109

This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 48.6 bits (116), Expect = 6e-08
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 67  VIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 125
           V+D  CG G   +  A     +V  +DI P  L LA+  A    ++  ++ ++GD   L 
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAA-AALLADNVEVLKGDAEELP 60

Query: 126 PSLQG--DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLF 165
           P      DV+   PP        + F ++        G  L 
Sbjct: 61  PEADESFDVIISDPPLHHLVEDLARF-LEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 72  CGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ 129
           CG G   I+ A +    +V  +D+ P  L LA+ NA    +  +I F+QGD       L+
Sbjct: 10  CGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK-LALGPRITFVQGDAPDALDLLE 68

Query: 130 G-DVVFLS 136
           G D VF+ 
Sbjct: 69  GFDAVFIG 76

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 65  DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
           + V+D +CG G   +  A   +KV  ++I P  +  AQ NA+  G+   ++FI GD    
Sbjct: 295 ERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEF 353

Query: 125 APSLQG----DVVFLSPP 138
            P+       DVV + PP
Sbjct: 354 TPAWWEGYKPDVVVVDPP 371

Length = 432

>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 13/101 (12%)

Query: 63  ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQG 119
           A   V++ F   GG ++  AA+    +V S+D+    L  A+ NA + G+   + +FI G
Sbjct: 217 AGKRVLNLFSYTGGFSV-HAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVG 275

Query: 120 DFFALAPSLQG-----DVVFLSPPWGGPEYARSSFSIDNIF 155
           D F      +      D++ L P    P +ARS     +  
Sbjct: 276 DVFKWLRKAERRGEKFDLIILDP----PSFARSKKQEFSAQ 312

Length = 393

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 53  VAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGV 110
           V   +A   +    ++D   G G   I  A      +VI++DI P  L LA+ NA   G+
Sbjct: 100 VEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL 159

Query: 111 SHKIQFIQGDFFALAPSLQGDVVFLSPPW 139
             ++  +Q D F      + D++  +PP+
Sbjct: 160 -VRVLVVQSDLFE-PLRGKFDLIVSNPPY 186

Length = 280

>gnl|CDD|223194 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 85  CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QGDVVFLSPPWG 140
              +   DIDP  +  A+ NA   GV   I+F Q D   L   L +  VV  +PP+G
Sbjct: 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYG 310

Length = 381

>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only]

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 57  IASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQ 115
           +A   K  + V+D F G G  +I  A     KV +IDI+P  +   + N  +  V  +++
Sbjct: 182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVE 241

Query: 116 FIQGDFFALAP-SLQGDVVFLSPPWGGPEY 144
            I GD   +AP     D + +  P    E+
Sbjct: 242 PILGDAREVAPELGVADRIIMGLPKSAHEF 271

Length = 341

>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 67  VIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
           ++D   G G   +  A      +VI++DI P  L +A+ NA    + H+++FIQ + F  
Sbjct: 118 ILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP 177

Query: 125 APSLQGDVVFLSPPW 139
               + D++  +PP+
Sbjct: 178 LAGQKIDIIVSNPPY 192

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 43.7 bits (104), Expect = 9e-06
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGD 120
           K  D V++   G G   I  A   +KV+ +DI+P  +  A+ NA +  + +  ++ I+ D
Sbjct: 22  KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD 81

Query: 121 FFALAPSLQGDVVFLSPP 138
            F      + DV+  +PP
Sbjct: 82  LFEPFRGDKFDVILFNPP 99

Length = 188

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 87  KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 138
           +V ++DI P  L +A+ NA+  G+   ++F+Q D+F   P  + D++  +PP
Sbjct: 113 RVTAVDISPEALAVARKNAARLGLD-NVEFLQSDWFEPLPGGKFDLIVSNPP 163

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 25/102 (24%)

Query: 65  DVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 122
           D + D   G G  TI++A      +VI+I+ D   L L + NA+ +GV + ++ ++GD  
Sbjct: 36  DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGD-- 92

Query: 123 ALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRL 164
                              PE      S D IF   GGG  +
Sbjct: 93  ------------------APEALPDLPSPDAIF--IGGGGNI 114

Length = 187

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 87  KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS-PP 138
           +V ++DI P  L +A+ NA  +G+  +++F+QGD+F   P  + D++ +S PP
Sbjct: 134 EVTAVDISPEALAVARRNA-KHGLGARVEFLQGDWFEPLPGGRFDLI-VSNPP 184

Length = 275

>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 65  DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
           ++V+D +CG G  T+  A   + V+ I++ P  +  AQ NA + G+++ ++F+ G    +
Sbjct: 294 ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETV 352

Query: 125 APSL-----QGDVVFLSPPWGG 141
            P         DV+ L PP  G
Sbjct: 353 LPKQPWAGQIPDVLLLDPPRKG 374

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [Protein synthesis, tRNA and rRNA base modification]. Length = 431

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 15/106 (14%)

Query: 67  VIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 125
           ++D  CG G      A A    V  +DI    L LA+      G   K++F+  D   L 
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKG--PKVRFVVADARDL- 57

Query: 126 PSLQG--DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVAR 169
           P  +G  D+V      G      S   +  +       R   ++ R
Sbjct: 58  PFEEGSFDLVIC---AGLSLDYLSPKQLRALL------REAARLLR 94

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 57  IASRCKASDVVIDGFCGCGGNTIQFAAVCQK---VISIDIDPAKLRLAQHNASVYGVSHK 113
           IA   K  +VV+D F G G  +I   A   K   V +++++P  ++  + N  +  V   
Sbjct: 94  IAKLVKEGEVVVDMFAGIGPFSIP-IAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGV 152

Query: 114 IQFIQGDFFALAPSLQGDVVFLSPP 138
           I  I GD   +      D V ++ P
Sbjct: 153 ISPILGDVRDVILEGVADRVIMNLP 177

The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199

>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein; Provisional

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 53  VAQHI--ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 110
           V   I   +  K +D V++   G G  T +   + +KVI+I+IDP  +   +       +
Sbjct: 24  VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL 83

Query: 111 SHKIQFIQGDF 121
           + K++ I+GD 
Sbjct: 84  ASKLEVIEGDA 94

Length = 294

>gnl|CDD|236981 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 92  DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD---VVFLSPPWG 140
           DIDP  ++ A+ NA   GV+  I F   D   L   L      +V  +PP+G
Sbjct: 263 DIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYG 314

Length = 702

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 19/93 (20%)

Query: 66  VVIDGFCGCGG---NTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 120
            VI    GCGG   N IQ A +    ++I++D  P KL LA+     +G +H +   + D
Sbjct: 187 AVI----GCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR----RFGATHTVNASEDD 238

Query: 121 FFALAPSLQG----DVVFLSPPWGGPEYARSSF 149
                  L      D  F +   G     R + 
Sbjct: 239 AVEAVRDLTDGRGADYAFEAV--GRAATIRQAL 269

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 65  DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
           D V++   G G   I+     + +++ DI+P  ++  + NA +  V   +  +  D   L
Sbjct: 21  DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVG--LDVVMTD---L 75

Query: 125 APSLQG--DVVFLSPPW 139
              ++G  DV+  +PP+
Sbjct: 76  FKGVRGKFDVILFNPPY 92

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 67  VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
           V+D  CG G  +I+ A     V ++DI    +++A++ A    V+  ++F   D  +L
Sbjct: 59  VLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL 116

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 62  KASDVVIDGFCGCGGNTIQFAA-VCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 118
           K+   V+D  CG G  T   A  +    +V+ IDI    +  A+ NA   G    ++FIQ
Sbjct: 2   KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE-NVEFIQ 60

Query: 119 GDFFAL 124
           GD   L
Sbjct: 61  GDIEEL 66

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 59  SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 118
           +R    D V+D FCG GG  I+   +  KVI  DID   +  A+ N   YG+       +
Sbjct: 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKR 236

Query: 119 GDFFALA-PSLQGDVVFLSPPWG 140
           GD   L   S   D +   PP+G
Sbjct: 237 GDATKLPLSSESVDAIATDPPYG 259

This family is found exclusively in the Archaea [Hypothetical proteins, Conserved]. Length = 329

>gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 17/52 (32%), Positives = 30/52 (57%)

Query: 87  KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 138
           +V ++DI P  L +A+ N   +G+  ++  IQ D FA  P  + D++  +PP
Sbjct: 147 EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP 198

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 60  RCKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQF 116
           R +  D+++D  CG G  T++ + +     KV ++D D   + L + NA  +GV + I  
Sbjct: 37  RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVL 96

Query: 117 IQGDFFALAPSL--QGDVVFLSPPWGGPE 143
           I+G+   +  ++  + D +F+    GG E
Sbjct: 97  IKGEAPEILFTINEKFDRIFIG---GGSE 122

Length = 198

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 78  TIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 120
            +  A       ++ +I+ D  +  +A+ N +  GV  +I+ + G 
Sbjct: 74  ALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119

Length = 219

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 65  DVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 118
             VID   GCG   +  AA+     KV+ IDIDP  +  A+ NA +  VS ++Q   
Sbjct: 161 KNVID--VGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 215

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|223971 COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair]

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 59  SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS 111
           +R K  ++V+D FCG GG  I+   +  +VI  DID   +R A+ N   YG+ 
Sbjct: 193 ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE 245

Length = 347

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 67  VIDGFCGCGGNTIQFAAVCQK--VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
           ++D   G G   +  A   +K  ++ ++I      +AQ N ++  +  +IQ I+ D    
Sbjct: 48  ILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF 107

Query: 125 APSLQG---DVVFLSPP 138
             +L     D++  +PP
Sbjct: 108 LKALVFASFDLIICNPP 124

Length = 248

>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 51  EKVAQHI--ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY 108
           + V   I  A+     D V++   G G  T        +V +I+ID    RLA+     +
Sbjct: 16  KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDR---RLAEVLKERF 72

Query: 109 GVSHKIQFIQGDF--FALAPSLQGDVVFLSPP 138
                +  I GD   F      Q   V  + P
Sbjct: 73  APYDNLTVINGDALKFDFPSLAQPYKVVANLP 104

Length = 259

>gnl|CDD|182918 PRK11036, PRK11036, putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 67  VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 118
           V+D   G G   I+ A +  +VI  D+    ++ A+  A   GVS  +QFI 
Sbjct: 48  VLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH 99

Length = 255

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 66  VVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLA-QHNASVYGVSHKIQFIQGDFFA 123
           V++ G  G G N +Q A      VI++DI   KL LA +  A    V + +     D  A
Sbjct: 169 VLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGAD--EVLNSLDDSPKDKKA 226

Query: 124 LAPSLQGDVVF 134
                  DV+F
Sbjct: 227 AGLGGGFDVIF 237

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|131140 TIGR02085, meth_trns_rumB, 23S rRNA (uracil-5-)-methyltransferase RumB

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 69  DGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF--FALAP 126
           D FCG GG  +  A    ++  I+I+   +  AQ +A + G+ + + F   D   FA A 
Sbjct: 239 DLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKFATAQ 297

Query: 127 SLQGDVVFLSPP 138
               ++V ++PP
Sbjct: 298 MSAPELVLVNPP 309

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA [Protein synthesis, tRNA and rRNA base modification]. Length = 374

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.9
KOG2730|consensus	263		99.86
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.73
PHA03412	241	putative methyltransferase; Provisional	99.72
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.71
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.71
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.69
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.69
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.68
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.67
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.67
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.66
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.66
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.65
COG4123	248	Predicted O-methyltransferase [General function pr	99.64
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.64
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.63
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.63
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.63
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.62
COG2890	280	HemK Methylase of polypeptide chain release factor	99.62
KOG3420|consensus	185		99.6
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.6
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.59
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.58
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.57
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.57
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.57
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.57
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.57
PHA03411	279	putative methyltransferase; Provisional	99.56
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.56
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.55
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.54
KOG2187|consensus	534		99.54
PRK14967	223	putative methyltransferase; Provisional	99.53
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.53
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.53
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.53
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.53
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	99.52
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.51
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.51
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.51
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.51
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.51
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.5
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.49
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.49
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.47
PRK11207	197	tellurite resistance protein TehB; Provisional	99.47
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.47
KOG2904|consensus	328		99.46
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.45
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.43
PRK14968	188	putative methyltransferase; Provisional	99.43
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.42
PLN02244	340	tocopherol O-methyltransferase	99.42
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.42
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.42
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.41
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.41
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.4
COG2520	341	Predicted methyltransferase [General function pred	99.4
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.4
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.39
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.39
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.39
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.38
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.38
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.38
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.38
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.38
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.37
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.37
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.37
PRK12335	287	tellurite resistance protein TehB; Provisional	99.35
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.35
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.35
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.35
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.33
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	99.33
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.33
PLN02672	1082	methionine S-methyltransferase	99.32
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.32
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.32
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.31
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.31
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.3
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.3
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.3
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.29
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.29
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.29
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.27
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.27
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.27
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.27
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.26
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.26
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.26
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.26
PRK10742	250	putative methyltransferase; Provisional	99.25
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.25
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.24
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.24
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.23
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.23
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.23
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.22
KOG3191|consensus	209		99.22
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.22
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.22
KOG1270|consensus	282		99.21
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.21
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.21
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.21
PRK05785	226	hypothetical protein; Provisional	99.2
PLN02336	475	phosphoethanolamine N-methyltransferase	99.19
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.18
PRK07402	196	precorrin-6B methylase; Provisional	99.18
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.17
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	99.17
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.16
KOG0820|consensus	315		99.15
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.15
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.15
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.14
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.13
PLN02476	278	O-methyltransferase	99.11
PRK04266	226	fibrillarin; Provisional	99.1
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.08
PRK06922	677	hypothetical protein; Provisional	99.08
TIGR03438	301	probable methyltransferase. This model represents	99.08
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.08
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.08
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	99.07
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.07
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.06
COG0286	489	HsdM Type I restriction-modification system methyl	99.06
PLN02490	340	MPBQ/MSBQ methyltransferase	99.05
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.05
PLN02336	475	phosphoethanolamine N-methyltransferase	99.05
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.04
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.03
PLN03075	296	nicotianamine synthase; Provisional	99.02
KOG1271|consensus	227		99.02
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.02
PRK08317	241	hypothetical protein; Provisional	99.01
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.0
KOG1540|consensus	296		99.0
PRK06202	232	hypothetical protein; Provisional	98.99
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.99
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.99
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.99
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.98
KOG2671|consensus	421		98.98
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.97
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.97
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.97
COG2521	287	Predicted archaeal methyltransferase [General func	98.96
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.95
PRK00811	283	spermidine synthase; Provisional	98.95
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.94
PRK04148	134	hypothetical protein; Provisional	98.94
PRK04457	262	spermidine synthase; Provisional	98.94
KOG1500|consensus	517		98.92
COG4122	219	Predicted O-methyltransferase [General function pr	98.92
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.89
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.88
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.88
KOG1499|consensus	346		98.87
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.85
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.85
PTZ00146	293	fibrillarin; Provisional	98.85
PRK03612	521	spermidine synthase; Provisional	98.84
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.84
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.83
COG4076	252	Predicted RNA methylase [General function predicti	98.83
PRK01581	374	speE spermidine synthase; Validated	98.82
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.81
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.81
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.8
PLN02366	308	spermidine synthase	98.8
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.8
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.79
KOG1541|consensus	270		98.76
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	98.73
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	98.71
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.71
TIGR00438	188	rrmJ cell division protein FtsJ.	98.7
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.68
KOG3010|consensus	261		98.66
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	98.61
KOG4300|consensus	252		98.61
KOG2915|consensus	314		98.54
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.54
PLN02823	336	spermine synthase	98.54
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.54
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.53
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.51
KOG1663|consensus	237		98.49
KOG2078|consensus	495		98.46
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	98.45
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.45
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	98.4
PF13679	141	Methyltransf_32: Methyltransferase domain	98.37
COG3897	218	Predicted methyltransferase [General function pred	98.35
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.32
PRK11524	284	putative methyltransferase; Provisional	98.31
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.31
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	98.31
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.3
KOG1661|consensus	237		98.29
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.26
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.25
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.23
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	98.23
TIGR00497	501	hsdM type I restriction system adenine methylase (	98.22
COG3129	292	Predicted SAM-dependent methyltransferase [General	98.2
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.19
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.19
PRK10458	467	DNA cytosine methylase; Provisional	98.16
PRK13699	227	putative methylase; Provisional	98.15
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.14
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.13
KOG4058|consensus	199		98.1
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.06
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.0
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.98
KOG1975|consensus	389		97.97
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.97
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.95
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.94
KOG1122|consensus	460		97.91
KOG1227|consensus	351		97.82
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.82
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.82
PHA01634	156	hypothetical protein	97.79
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.76
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.75
PRK00536	262	speE spermidine synthase; Provisional	97.7
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.66
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.62
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.6
KOG2361|consensus	264		97.58
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.54
KOG2899|consensus	288		97.52
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.52
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.47
KOG1501|consensus	636		97.45
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.45
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.43
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.41
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.41
KOG3045|consensus	325		97.3
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.21
KOG2940|consensus	325		97.18
KOG2198|consensus	375		97.09
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.08
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.98
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.95
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.92
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.8
KOG2912|consensus	419		96.76
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.72
KOG4589|consensus	232		96.68
COG0863	302	DNA modification methylase [DNA replication, recom	96.58
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.55
COG1568	354	Predicted methyltransferases [General function pre	96.52
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.49
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.42
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.35
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.32
KOG3115|consensus	249		96.29
KOG2360|consensus	413		96.27
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	95.93
KOG1709|consensus	271		95.85
KOG1253|consensus	525		95.85
KOG3987|consensus	288		95.83
KOG0919|consensus	338		95.81
KOG1269|consensus	364		95.76
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.56
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	95.55
KOG0822|consensus	649		95.51
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	94.91
KOG2651|consensus	476		94.8
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	94.39
PTZ00357	1072	methyltransferase; Provisional	94.2
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	94.14
KOG0821|consensus	326		94.03
KOG3178|consensus	342		93.95
KOG2352|consensus	482		93.8
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	93.72
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	93.63
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	93.47
COG1565	370	Uncharacterized conserved protein [Function unknow	93.21
COG2961	279	ComJ Protein involved in catabolism of external DN	93.09
PRK13699	227	putative methylase; Provisional	93.04
PRK11524	284	putative methyltransferase; Provisional	93.04
COG1743	875	Adenine-specific DNA methylase containing a Zn-rib	92.98
KOG3924|consensus	419		92.95
KOG2920|consensus	282		92.83
COG2933	358	Predicted SAM-dependent methyltransferase [General	92.77
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	92.33
KOG1201|consensus	300		92.1
KOG1596|consensus	317		91.83
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.73
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	91.7
KOG2793|consensus	248		91.15
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	91.1
PRK06194	287	hypothetical protein; Provisional	90.96
KOG2798|consensus	369		89.81
KOG1099|consensus	294		89.76
KOG2352|consensus	482		89.71
PRK05854	313	short chain dehydrogenase; Provisional	89.52
PRK05867	253	short chain dehydrogenase; Provisional	88.99
KOG2782|consensus	303		88.96
PRK07478	254	short chain dehydrogenase; Provisional	88.91
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	88.69
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	88.55
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	88.52
PRK07523	255	gluconate 5-dehydrogenase; Provisional	88.51
PRK07890	258	short chain dehydrogenase; Provisional	88.42
KOG1098|consensus	780		88.13
PRK07063	260	short chain dehydrogenase; Provisional	88.12
PRK06197	306	short chain dehydrogenase; Provisional	88.08
PRK05876	275	short chain dehydrogenase; Provisional	88.05
KOG0024|consensus	354		87.85
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	87.68
COG0338	274	Dam Site-specific DNA methylase [DNA replication,	87.59
PRK06172	253	short chain dehydrogenase; Provisional	87.56
KOG1331|consensus	293		87.56
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	87.45
COG1255	129	Uncharacterized protein conserved in archaea [Func	87.31
PRK06124	256	gluconate 5-dehydrogenase; Provisional	87.23
PRK08339	263	short chain dehydrogenase; Provisional	87.13
PRK09496	453	trkA potassium transporter peripheral membrane com	86.99
PRK07102	243	short chain dehydrogenase; Provisional	86.77
PRK07062	265	short chain dehydrogenase; Provisional	86.35
PRK06949	258	short chain dehydrogenase; Provisional	86.17
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	85.96
PRK10669	558	putative cation:proton antiport protein; Provision	85.85
COG0569	225	TrkA K+ transport systems, NAD-binding component [	85.65
PRK06125	259	short chain dehydrogenase; Provisional	85.59
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.59
PRK07097	265	gluconate 5-dehydrogenase; Provisional	85.39
PRK07576	264	short chain dehydrogenase; Provisional	85.17
COG3392	330	Adenine-specific DNA methylase [DNA replication, r	85.13
PRK08862	227	short chain dehydrogenase; Provisional	85.09
PRK06139	330	short chain dehydrogenase; Provisional	85.08
PRK09291	257	short chain dehydrogenase; Provisional	84.98
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.92
PRK05866	293	short chain dehydrogenase; Provisional	84.88
PRK07035	252	short chain dehydrogenase; Provisional	84.82
PRK03659	601	glutathione-regulated potassium-efflux system prot	84.72
PRK08251	248	short chain dehydrogenase; Provisional	84.69
PRK07904	253	short chain dehydrogenase; Provisional	84.22
PRK06181	263	short chain dehydrogenase; Provisional	84.06
TIGR00571	266	dam DNA adenine methylase (dam). All proteins in t	83.62
PRK08303	305	short chain dehydrogenase; Provisional	83.61
PRK08277	278	D-mannonate oxidoreductase; Provisional	83.48
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	83.25
PRK08589	272	short chain dehydrogenase; Validated	83.07
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	82.79
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	82.73
PRK07791	286	short chain dehydrogenase; Provisional	82.68
PRK09242	257	tropinone reductase; Provisional	82.51
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	82.27
COG4889	1518	Predicted helicase [General function prediction on	82.23
PRK03562	621	glutathione-regulated potassium-efflux system prot	82.09
PRK06196	315	oxidoreductase; Provisional	82.03
PRK05650	270	short chain dehydrogenase; Provisional	81.99
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.97
PRK08703	239	short chain dehydrogenase; Provisional	81.89
PRK12939	250	short chain dehydrogenase; Provisional	81.87
TIGR00571	266	dam DNA adenine methylase (dam). All proteins in t	81.84
PRK07109	334	short chain dehydrogenase; Provisional	81.8
PRK07454	241	short chain dehydrogenase; Provisional	81.79
PRK06940	275	short chain dehydrogenase; Provisional	81.44
PRK07677	252	short chain dehydrogenase; Provisional	80.79
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	80.53
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	80.41
PRK08340	259	glucose-1-dehydrogenase; Provisional	80.32
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	80.19
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	80.18
PRK07024	257	short chain dehydrogenase; Provisional	80.01
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	80.01

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.90  E-value=1.7e-23  Score=148.80  Aligned_cols=122  Identities=54%  Similarity=0.976  Sum_probs=94.8

Q ss_pred             CEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC----ccEEEECCCCC
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ----GDVVFLSPPWG  140 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~D~v~~npp~~  140 (189)
                      ..|+|++||.|+.++.+|+...+|+++|+++..++.|++|+...|+.++++++++|+.+..+...    +|+|+++|||+
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG   80 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG   80 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence            36899999999999999999999999999999999999999999998899999999998763222    89999999999


Q ss_pred             CCcccc-ccccccccC-cCCCCchhHHHHhhhcCCceEEEcCCCCCcccc
Q psy13204        141 GPEYAR-SSFSIDNIF-PEQGGGRRLFQVARGISPNVGYYLPRTSDVFEL  188 (189)
Q Consensus       141 ~~~~~~-~~~~~~~~l-~~~~~g~~~~~~~~~~~~~~~~~lp~~~~~~~l  188 (189)
                      +.+|.+ ..+++...+ |-  ++..++...+.++++.+++|||++|+++|
T Consensus        81 Gp~Y~~~~~fdL~~~~~p~--~~~~l~~~~~~~t~nv~l~LPRn~dl~ql  128 (163)
T PF09445_consen   81 GPSYSKKDVFDLEKSMQPF--NLEDLLKAARKITPNVVLFLPRNSDLNQL  128 (163)
T ss_dssp             SGGGGGSSSB-TTTSSSS----HHHHHHHHHHH-S-EEEEEETTB-HHHH
T ss_pred             CccccccCccCHHHccCCC--CHHHHHHHHHhhCCCEEEEeCCCCCHHHH
Confidence            999998 567774444 53  47799999999999999999999999876

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG2730|consensus

Probab=99.86  E-value=2.2e-22  Score=146.47  Aligned_cols=155  Identities=51%  Similarity=0.914  Sum_probs=136.7

Q ss_pred             hhhcCCcccCCCcccccChHHHHHHHHHhCCC---CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Q psy13204         32 LTLADADNDATESWYSVTPEKVAQHIASRCKA---SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY  108 (189)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  108 (189)
                      ..+.++..++++.||+.+|+.++..++.....   ...|+|.+||.|+.++.++..+..|+++|++|.-+..|++|++..
T Consensus        60 srfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiY  139 (263)
T KOG2730|consen   60 SRFDSGIYMDREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVY  139 (263)
T ss_pred             HhhccceeecccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceee
Confidence            45556788999999999999888887765443   678999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEeCCcccCCCCC-----CccEEEECCCCCCCcccc-ccccccccCcCCCCchhHHHHhhhcCCceEEEcCCC
Q psy13204        109 GVSHKIQFIQGDFFALAPSL-----QGDVVFLSPPWGGPEYAR-SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRT  182 (189)
Q Consensus       109 ~~~~~~~~~~~d~~~~~~~~-----~~D~v~~npp~~~~~~~~-~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~lp~~  182 (189)
                      |++++++++++|.++.....     .+|++++-|||++.++.. ...|++..+++  .+..++.....++|..+.|||++
T Consensus       140 GI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p--~~~~~fk~s~kispnv~~flprn  217 (263)
T KOG2730|consen  140 GVPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPSYLRADVYDLETHLKP--MGTKIFKSSLKISPNVAYFLPRN  217 (263)
T ss_pred             cCCceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcchhhhhhhhhhhhcch--hHHHHHHhhhhcCcchhhhCCcc
Confidence            99999999999999876322     467999999999999998 66789888865  37799999999999999999999


Q ss_pred             CCcccc
Q psy13204        183 SDVFEL  188 (189)
Q Consensus       183 ~~~~~l  188 (189)
                      .+.++|
T Consensus       218 tdv~ql  223 (263)
T KOG2730|consen  218 TDVNQL  223 (263)
T ss_pred             hhHHHH
Confidence            998765

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.73  E-value=4.7e-17  Score=131.58  Aligned_cols=115  Identities=21%  Similarity=0.350  Sum_probs=92.7

Q ss_pred             cchhhhhhhcC-CcccCCCcccccChHHHH---HHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHH
Q psy13204         26 GLEYFELTLAD-ADNDATESWYSVTPEKVA---QHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR   99 (189)
Q Consensus        26 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~   99 (189)
                      |++++.+.+.+ .+.+++.+|+|.++....   +.+...+.  .+.+|+|+|||+|.+++.++..+.+|+|+|+++.+++
T Consensus       190 G~~~i~e~~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~  269 (374)
T TIGR02085       190 EQQALPERFNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIA  269 (374)
T ss_pred             CCCeeEEEECCEEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHH
Confidence            45555555544 588899999999985433   22333332  3679999999999999999988899999999999999


Q ss_pred             HHHHHHHHhCCCCceEEEeCCcccCCC--CCCccEEEECCCCCC
Q psy13204        100 LAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPWGG  141 (189)
Q Consensus       100 ~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~npp~~~  141 (189)
                      .|++|++.+++ .+++++++|+.+...  ...||+|++|||+.+
T Consensus       270 ~a~~N~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G  312 (374)
T TIGR02085       270 CAQQSAQMLGL-DNLSFAALDSAKFATAQMSAPELVLVNPPRRG  312 (374)
T ss_pred             HHHHHHHHcCC-CcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence            99999999998 489999999987652  246999999999975

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PHA03412 putative methyltransferase; Provisional

Probab=99.72  E-value=1.7e-16  Score=118.86  Aligned_cols=144  Identities=14%  Similarity=0.230  Sum_probs=98.5

Q ss_pred             hhhhhhhcCCcccC---CCcccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh-----CCeEEEEeCCHHHHH
Q psy13204         28 EYFELTLADADNDA---TESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV-----CQKVISIDIDPAKLR   99 (189)
Q Consensus        28 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~-----~~~v~~vD~~~~~~~   99 (189)
                      .+..+++.++....   ...||  ||..+++.++.....+.+|||+|||+|.+++.+++.     ..+++++|+++.+++
T Consensus        13 ~f~~~n~~~~~~~~~~~~GqFf--TP~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~   90 (241)
T PHA03412         13 LFIIENFHEGAFTNNSELGAFF--TPIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYK   90 (241)
T ss_pred             HHHHhhcccccccccccCCccC--CCHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHH
Confidence            34455555432222   23444  555666666433333789999999999999999864     358999999999999


Q ss_pred             HHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCCccccccccccccCcC-CCCchhHHHHhhhcCCceEEE
Q psy13204        100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPE-QGGGRRLFQVARGISPNVGYY  178 (189)
Q Consensus       100 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~-~~~g~~~~~~~~~~~~~~~~~  178 (189)
                      .|++|..      ++.++++|+.......+||+|++||||......+.     ..... ..-...++..+.++.+...++
T Consensus        91 ~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~~d~-----~ar~~g~~~~~~li~~A~~Ll~~G~~I  159 (241)
T PHA03412         91 LGKRIVP------EATWINADALTTEFDTLFDMAISNPPFGKIKTSDF-----KGKYTGAEFEYKVIERASQIARQGTFI  159 (241)
T ss_pred             HHHhhcc------CCEEEEcchhcccccCCccEEEECCCCCCcccccc-----CCcccccHHHHHHHHHHHHHcCCCEEE
Confidence            9998853      57899999987654568999999999997442221     01111 000224666666788888889


Q ss_pred             cCCCCC
Q psy13204        179 LPRTSD  184 (189)
Q Consensus       179 lp~~~~  184 (189)
                      ||+++-
T Consensus       160 LP~~~~  165 (241)
T PHA03412        160 IPQMSA  165 (241)
T ss_pred             eCcccc
Confidence            999863

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.71  E-value=5.7e-17  Score=128.44  Aligned_cols=116  Identities=20%  Similarity=0.309  Sum_probs=92.7

Q ss_pred             cchhhhhhhcC-CcccCCCcccccChHH---HHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHH
Q psy13204         26 GLEYFELTLAD-ADNDATESWYSVTPEK---VAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR   99 (189)
Q Consensus        26 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~   99 (189)
                      |.+++.+.+.+ .+.+.+.+|+|.++..   +.+.+.+.+.  .+.+|||+|||+|.+++.+++.+.+|+|+|+++.+++
T Consensus       130 g~~~~~~~~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~  209 (315)
T PRK03522        130 EQQALPERFNGVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIA  209 (315)
T ss_pred             CCCeEEEEECCEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            44455555544 5778899999998853   3333333332  3789999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCCCC
Q psy13204        100 LAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       100 ~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~~  142 (189)
                      .|++|+..+++ .+++++++|+.++.  ....||+|++|||+.+.
T Consensus       210 ~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~  253 (315)
T PRK03522        210 CAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPRRGI  253 (315)
T ss_pred             HHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCCCCc
Confidence            99999999998 58999999998765  23479999999998763

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=1.7e-16  Score=113.83  Aligned_cols=102  Identities=25%  Similarity=0.341  Sum_probs=79.0

Q ss_pred             CcccCCCcccc-cChHHHHHHHHHhC--CC---CCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhC
Q psy13204         37 ADNDATESWYS-VTPEKVAQHIASRC--KA---SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYG  109 (189)
Q Consensus        37 ~~~~~~~~~~~-~~~~~~~~~~~~~~--~~---~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~  109 (189)
                      ++.-+.....| .||..++..++...  ..   +..|+|+|||+|.+++.++..| .+|+|+|+++++++.+++|....+
T Consensus        13 ~f~~p~~~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~   92 (198)
T COG2263          13 GFPNPKLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL   92 (198)
T ss_pred             CCCCCCccceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC
Confidence            34444334433 35555555544332  11   7789999999999999999987 579999999999999999998844


Q ss_pred             CCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204        110 VSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       110 ~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                        .++.++++|+.++  ...+|.+++||||+..
T Consensus        93 --g~v~f~~~dv~~~--~~~~dtvimNPPFG~~  121 (198)
T COG2263          93 --GDVEFVVADVSDF--RGKFDTVIMNPPFGSQ  121 (198)
T ss_pred             --CceEEEEcchhhc--CCccceEEECCCCccc
Confidence              5899999999887  4678999999999863

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.69  E-value=3.3e-16  Score=113.68  Aligned_cols=101  Identities=23%  Similarity=0.381  Sum_probs=76.6

Q ss_pred             CCCcccccChHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCe--EEEEeCCHHHHHHHHHHHHHhCCCCceEE
Q psy13204         41 ATESWYSVTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQK--VISIDIDPAKLRLAQHNASVYGVSHKIQF  116 (189)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~  116 (189)
                      .+.-|.....+.-...+++.+.  .+.+|||+|||+|.+++.+++.+..  |+++|+++.+++.+++|+..+++.. +++
T Consensus         7 ~~gvFs~~~~d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~   85 (170)
T PF05175_consen    7 HPGVFSPPRLDAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEV   85 (170)
T ss_dssp             ETTSTTTTSHHHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEE
T ss_pred             CCCeeCCCCCCHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccc
Confidence            3434433444333333333332  3789999999999999999998554  9999999999999999999999953 999


Q ss_pred             EeCCcccCCCCCCccEEEECCCCCCC
Q psy13204        117 IQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       117 ~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      +++|..+..+..+||+|++|||++..
T Consensus        86 ~~~d~~~~~~~~~fD~Iv~NPP~~~~  111 (170)
T PF05175_consen   86 VQSDLFEALPDGKFDLIVSNPPFHAG  111 (170)
T ss_dssp             EESSTTTTCCTTCEEEEEE---SBTT
T ss_pred             ccccccccccccceeEEEEccchhcc
Confidence            99999888777899999999998753

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.69  E-value=1.4e-16  Score=128.21  Aligned_cols=117  Identities=21%  Similarity=0.348  Sum_probs=93.7

Q ss_pred             ccchhhhhhh--cC---CcccCCCcccccChH---HHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHhCCeEEEEeCCH
Q psy13204         25 TGLEYFELTL--AD---ADNDATESWYSVTPE---KVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP   95 (189)
Q Consensus        25 ~~~~~~~~~~--~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~   95 (189)
                      +|++++.+.+  .+   .+..++.+|||.++.   .+.+.+.+.+.. +..|||+|||+|.+++.+++...+|+|+|+++
T Consensus       159 ~G~~~i~e~l~~~~~~~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~  238 (362)
T PRK05031        159 LDQDYVDERLPVAGREFIYRQVENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISK  238 (362)
T ss_pred             cCCCEEEEEEecCCcEEEEEeCCCCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCH
Confidence            4667776666  23   477789999999974   455555555542 35799999999999999999888999999999


Q ss_pred             HHHHHHHHHHHHhCCCCceEEEeCCcccCCC-----------------CCCccEEEECCCCCCC
Q psy13204         96 AKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------------SLQGDVVFLSPPWGGP  142 (189)
Q Consensus        96 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------------~~~~D~v~~npp~~~~  142 (189)
                      .+++.|++|+..+++ .+++++++|+.++.+                 ...||+|++|||+.+.
T Consensus       239 ~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~  301 (362)
T PRK05031        239 PSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL  301 (362)
T ss_pred             HHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCC
Confidence            999999999999998 589999999977531                 1258999999999763

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=9.1e-16  Score=125.33  Aligned_cols=106  Identities=27%  Similarity=0.521  Sum_probs=90.7

Q ss_pred             CcccCCCcccccChHH---HHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC
Q psy13204         37 ADNDATESWYSVTPEK---VAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS  111 (189)
Q Consensus        37 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  111 (189)
                      .+.++.++|||.++..   +..+..+.+..  +++++|++||.|.+++.+|+...+|+|+|+++++++.|++|++.+++ 
T Consensus       262 ~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i-  340 (432)
T COG2265         262 SFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI-  340 (432)
T ss_pred             EEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC-
Confidence            4667788999999854   44444455543  67999999999999999999999999999999999999999999999 


Q ss_pred             CceEEEeCCcccCCCC----CCccEEEECCCCCCCc
Q psy13204        112 HKIQFIQGDFFALAPS----LQGDVVFLSPPWGGPE  143 (189)
Q Consensus       112 ~~~~~~~~d~~~~~~~----~~~D~v~~npp~~~~~  143 (189)
                      .+++++.+++.++.+.    ..+|+|+.|||+.+.+
T Consensus       341 ~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~  376 (432)
T COG2265         341 DNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD  376 (432)
T ss_pred             CcEEEEeCCHHHHhhhccccCCCCEEEECCCCCCCC
Confidence            4699999999998732    4789999999999865

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.67  E-value=2.3e-16  Score=107.32  Aligned_cols=79  Identities=30%  Similarity=0.518  Sum_probs=69.8

Q ss_pred             CCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPPW  139 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp~  139 (189)
                      |.+|+|+|||+|.+++.+++.+ .+++|+|+++.+++.++.++...++..+++++++|+.+..   +..+||+|++||||
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            5689999999999999999998 8999999999999999999999988778999999998875   56789999999999


Q ss_pred             CCC
Q psy13204        140 GGP  142 (189)
Q Consensus       140 ~~~  142 (189)
                      ...
T Consensus        81 ~~~   83 (117)
T PF13659_consen   81 GPR   83 (117)
T ss_dssp             TSB
T ss_pred             ccc
Confidence            863

...

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.67  E-value=1.9e-15  Score=124.97  Aligned_cols=105  Identities=23%  Similarity=0.312  Sum_probs=88.1

Q ss_pred             CcccCCCcccccChH---HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC
Q psy13204         37 ADNDATESWYSVTPE---KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS  111 (189)
Q Consensus        37 ~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  111 (189)
                      .+.+++.+|+|.++.   .+.+.+.+.+.  ++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|++|+..+++ 
T Consensus       266 ~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-  344 (443)
T PRK13168        266 RLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-  344 (443)
T ss_pred             EEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-
Confidence            577889999999874   34445555443  478999999999999999999989999999999999999999999988 


Q ss_pred             CceEEEeCCcccCC-----CCCCccEEEECCCCCCC
Q psy13204        112 HKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       112 ~~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~~  142 (189)
                      .+++++++|+.+..     ...+||+|++||||.+.
T Consensus       345 ~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~  380 (443)
T PRK13168        345 DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGA  380 (443)
T ss_pred             CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcCh
Confidence            57999999987643     23579999999999874

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.66  E-value=3.1e-16  Score=115.44  Aligned_cols=128  Identities=11%  Similarity=0.076  Sum_probs=93.5

Q ss_pred             CCCcccccChHHHHHHHHHhCC---CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEE
Q psy13204         41 ATESWYSVTPEKVAQHIASRCK---ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQF  116 (189)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~---~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~  116 (189)
                      .......++.+.+.+.+...+.   .+.+|||+|||+|.++++++.+|+ +|+++|.++.+++.+++|+..+++.+++++
T Consensus        24 p~~~~~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~  103 (189)
T TIGR00095        24 PPGGSTRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEV  103 (189)
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEE
Confidence            3444555666666655555443   388999999999999999999876 799999999999999999999998657899


Q ss_pred             EeCCcccCCC-----CCCccEEEECCCCCCCcccccc--ccccccCcCCCCchhHHHHhhh
Q psy13204        117 IQGDFFALAP-----SLQGDVVFLSPPWGGPEYARSS--FSIDNIFPEQGGGRRLFQVARG  170 (189)
Q Consensus       117 ~~~d~~~~~~-----~~~~D~v~~npp~~~~~~~~~~--~~~~~~l~~~~~g~~~~~~~~~  170 (189)
                      +++|+.+...     ...+|+|+.||||.........  ..-..++++  +++.++++...
T Consensus       104 ~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~--~~iiv~E~~~~  162 (189)
T TIGR00095       104 VRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILED--TVLIVVEEDRE  162 (189)
T ss_pred             EehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCC--CeEEEEEecCC
Confidence            9999976531     2248999999999863332211  122345554  46677766554

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.66  E-value=8.2e-16  Score=123.39  Aligned_cols=106  Identities=28%  Similarity=0.486  Sum_probs=76.4

Q ss_pred             CcccCCCcccccChHH---HHHHHHHhCCC-CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy13204         37 ADNDATESWYSVTPEK---VAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH  112 (189)
Q Consensus        37 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  112 (189)
                      .+..++++|||.++..   +.+.+.+.++. +..++|++||+|.+++.+|+.+.+|+|+|+++.+++.|++|+..+++ .
T Consensus       166 ~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~  244 (352)
T PF05958_consen  166 SFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-D  244 (352)
T ss_dssp             EEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---
T ss_pred             EEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-C
Confidence            3667889999999854   44555566654 44899999999999999999999999999999999999999999999 6


Q ss_pred             ceEEEeCCcccCC-----------------CCCCccEEEECCCCCCCc
Q psy13204        113 KIQFIQGDFFALA-----------------PSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       113 ~~~~~~~d~~~~~-----------------~~~~~D~v~~npp~~~~~  143 (189)
                      +++++++++.++.                 ....+|+|+.|||+.+.+
T Consensus       245 n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~  292 (352)
T PF05958_consen  245 NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD  292 (352)
T ss_dssp             SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred             cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence            8999998876542                 122689999999999865

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.65  E-value=7.9e-16  Score=123.50  Aligned_cols=117  Identities=18%  Similarity=0.338  Sum_probs=92.1

Q ss_pred             ccchhhhhhh--cC---CcccCCCcccccChH---HHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHhCCeEEEEeCCH
Q psy13204         25 TGLEYFELTL--AD---ADNDATESWYSVTPE---KVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP   95 (189)
Q Consensus        25 ~~~~~~~~~~--~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~   95 (189)
                      +|++++.+.+  .+   .+..++.+|+|.++.   .+.+.+.+.+.. +..|+|+|||+|.+++.+++...+|+|+|+++
T Consensus       150 ~G~~~~~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~  229 (353)
T TIGR02143       150 LDQDYVDETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAK  229 (353)
T ss_pred             cCCCEEEEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCH
Confidence            3666665555  23   466788999999974   445555555542 44799999999999999999888999999999


Q ss_pred             HHHHHHHHHHHHhCCCCceEEEeCCcccCCCC-----------------CCccEEEECCCCCCC
Q psy13204         96 AKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-----------------LQGDVVFLSPPWGGP  142 (189)
Q Consensus        96 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----------------~~~D~v~~npp~~~~  142 (189)
                      ++++.|++|+..+++ .+++++++|+.++.+.                 ..+|+|++|||+.+.
T Consensus       230 ~av~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~  292 (353)
T TIGR02143       230 PSVNAAQYNIAANNI-DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGL  292 (353)
T ss_pred             HHHHHHHHHHHHcCC-CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCC
Confidence            999999999999998 4799999998875421                 137999999998763

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.64  E-value=1.8e-15  Score=114.27  Aligned_cols=82  Identities=20%  Similarity=0.282  Sum_probs=74.7

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp  138 (189)
                      ..+|+|+|||+|..++.++++  ..+++|||+++++.+.|++|+..+++..+++++++|+.++.   ...+||+|+||||
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP  124 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP  124 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence            789999999999999999988  37899999999999999999999999889999999999886   3346999999999


Q ss_pred             CCCCccc
Q psy13204        139 WGGPEYA  145 (189)
Q Consensus       139 ~~~~~~~  145 (189)
                      |......
T Consensus       125 yf~~~~~  131 (248)
T COG4123         125 YFKQGSR  131 (248)
T ss_pred             CCCCccc
Confidence            9987666

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.64  E-value=2.5e-15  Score=111.23  Aligned_cols=98  Identities=14%  Similarity=0.243  Sum_probs=77.6

Q ss_pred             CcccccChHHHHHHHHHhC---CCCCEEEEecCCCChHHHHHH-HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEe
Q psy13204         43 ESWYSVTPEKVAQHIASRC---KASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  118 (189)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~---~~~~~vlD~g~G~G~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~  118 (189)
                      ...+..+.+.+.+.+...+   ..+.+|||+|||+|.++++++ +...+|+++|+++.+++.+++|+..+++ .++++++
T Consensus        30 ~~~~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~  108 (199)
T PRK10909         30 SPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVN  108 (199)
T ss_pred             CCCcCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEE
Confidence            3445666666655554433   237899999999999999754 4457899999999999999999999988 4899999


Q ss_pred             CCcccCCC--CCCccEEEECCCCCC
Q psy13204        119 GDFFALAP--SLQGDVVFLSPPWGG  141 (189)
Q Consensus       119 ~d~~~~~~--~~~~D~v~~npp~~~  141 (189)
                      +|+.+..+  ...||+|++||||..
T Consensus       109 ~D~~~~l~~~~~~fDlV~~DPPy~~  133 (199)
T PRK10909        109 TNALSFLAQPGTPHNVVFVDPPFRK  133 (199)
T ss_pred             chHHHHHhhcCCCceEEEECCCCCC
Confidence            99987652  346999999999864

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.63  E-value=1.3e-15  Score=111.50  Aligned_cols=130  Identities=19%  Similarity=0.333  Sum_probs=88.9

Q ss_pred             ccCCCcccccChHHHHHHHHHhCC----CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCc
Q psy13204         39 NDATESWYSVTPEKVAQHIASRCK----ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHK  113 (189)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~  113 (189)
                      .........+|++.+.+.+...+.    .+.+|||++||+|.+++++..+|+ +|+.||.++.+++.+++|+...+..++
T Consensus        14 ~~p~~~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~   93 (183)
T PF03602_consen   14 KTPKGDNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDK   93 (183)
T ss_dssp             E-TT--TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGG
T ss_pred             cCCCCCCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcc
Confidence            334445566676666665555443    289999999999999999988865 799999999999999999999998667


Q ss_pred             eEEEeCCcccCC-----CCCCccEEEECCCCCCCcc-cccccc--ccccCcCCCCchhHHHHhhh
Q psy13204        114 IQFIQGDFFALA-----PSLQGDVVFLSPPWGGPEY-ARSSFS--IDNIFPEQGGGRRLFQVARG  170 (189)
Q Consensus       114 ~~~~~~d~~~~~-----~~~~~D~v~~npp~~~~~~-~~~~~~--~~~~l~~~~~g~~~~~~~~~  170 (189)
                      +++++.|+....     ....||+|++||||..... .+....  -..++.+  +++.++|+...
T Consensus        94 ~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~--~~~ii~E~~~~  156 (183)
T PF03602_consen   94 IRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNE--DGLIIIEHSKK  156 (183)
T ss_dssp             EEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEE--EEEEEEEEETT
T ss_pred             eeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCC--CEEEEEEecCC
Confidence            999999987665     4578999999999997653 332222  2355543  47777777655

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.63  E-value=2.2e-15  Score=124.30  Aligned_cols=115  Identities=23%  Similarity=0.457  Sum_probs=91.9

Q ss_pred             cchhhhhhhcC-CcccCCCcccccChHH---HHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHH
Q psy13204         26 GLEYFELTLAD-ADNDATESWYSVTPEK---VAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR   99 (189)
Q Consensus        26 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~   99 (189)
                      |.+++.+.+.+ .+.+++.+|+|.+++.   +.+.+.+.+.  ++.+|+|+|||+|.+++.+++.+.+|+|+|+++.+++
T Consensus       249 G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~  328 (431)
T TIGR00479       249 GEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVE  328 (431)
T ss_pred             CCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHH
Confidence            44455544443 5778899999998753   3333444333  3679999999999999999998889999999999999


Q ss_pred             HHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEECCCCCC
Q psy13204        100 LAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       100 ~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~  141 (189)
                      .|++|+..+++ .+++++++|+.+..     ....||+|++|||+.+
T Consensus       329 ~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G  374 (431)
T TIGR00479       329 KAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKG  374 (431)
T ss_pred             HHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCC
Confidence            99999999998 58999999997643     2346999999999876

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.63  E-value=7e-15  Score=117.23  Aligned_cols=91  Identities=32%  Similarity=0.465  Sum_probs=77.4

Q ss_pred             HHHHHHHHh--CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204         52 KVAQHIASR--CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL  128 (189)
Q Consensus        52 ~~~~~~~~~--~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~  128 (189)
                      .++..++..  .+++..|+|+|||+|+++++++..+.+++|+|+++.+++.++.|+...++. ++.+.++|+.+.. +..
T Consensus       169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~~~~  247 (329)
T TIGR01177       169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPLSSE  247 (329)
T ss_pred             HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCcccC
Confidence            455555543  345889999999999999999888999999999999999999999999985 4899999998875 456


Q ss_pred             CccEEEECCCCCCCc
Q psy13204        129 QGDVVFLSPPWGGPE  143 (189)
Q Consensus       129 ~~D~v~~npp~~~~~  143 (189)
                      .||+|++||||+...
T Consensus       248 ~~D~Iv~dPPyg~~~  262 (329)
T TIGR01177       248 SVDAIATDPPYGRST  262 (329)
T ss_pred             CCCEEEECCCCcCcc
Confidence            899999999998643

This family is found exclusively in the Archaea.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.62  E-value=1e-14  Score=113.88  Aligned_cols=106  Identities=22%  Similarity=0.290  Sum_probs=82.0

Q ss_pred             CcccCCCcccccCh--HHHHHHHH-HhC--CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC
Q psy13204         37 ADNDATESWYSVTP--EKVAQHIA-SRC--KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG  109 (189)
Q Consensus        37 ~~~~~~~~~~~~~~--~~~~~~~~-~~~--~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~  109 (189)
                      .+.+++..|. +.+  +.+....+ ..+  ..+.+|+|+|||+|.+++.+++.  +.+++|+|+|+.+++.|++|+..++
T Consensus        91 ~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~  169 (284)
T TIGR03533        91 EFYVDERVLI-PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG  169 (284)
T ss_pred             EEEECCCCcc-CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            3555665555 333  23333322 233  23578999999999999999987  5689999999999999999999998


Q ss_pred             CCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204        110 VSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       110 ~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~  143 (189)
                      +.++++++++|+.+..+...||+|++||||....
T Consensus       170 ~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~~~  203 (284)
T TIGR03533       170 LEDRVTLIQSDLFAALPGRKYDLIVSNPPYVDAE  203 (284)
T ss_pred             CCCcEEEEECchhhccCCCCccEEEECCCCCCcc
Confidence            8667999999987765556899999999998654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=4.4e-15  Score=115.50  Aligned_cols=91  Identities=27%  Similarity=0.389  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhCCCCC-EEEEecCCCChHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC
Q psy13204         51 EKVAQHIASRCKASD-VVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS  127 (189)
Q Consensus        51 ~~~~~~~~~~~~~~~-~vlD~g~G~G~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  127 (189)
                      +.+.+.+........ +|+|+|||+|..++.++....  +|+|+|+|+.+++.|+.|+..+++ .++.++++|.++..+.
T Consensus        97 e~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~  175 (280)
T COG2890          97 ELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRG  175 (280)
T ss_pred             HHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCC
Confidence            445555433333333 699999999999999999865  899999999999999999999998 6777888888777654


Q ss_pred             CCccEEEECCCCCCCc
Q psy13204        128 LQGDVVFLSPPWGGPE  143 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~  143 (189)
                       +||+|++||||-...
T Consensus       176 -~fDlIVsNPPYip~~  190 (280)
T COG2890         176 -KFDLIVSNPPYIPAE  190 (280)
T ss_pred             -ceeEEEeCCCCCCCc
Confidence             999999999999866

>KOG3420|consensus

Probab=99.60  E-value=4.2e-16  Score=106.94  Aligned_cols=132  Identities=22%  Similarity=0.371  Sum_probs=93.0

Q ss_pred             ChHHHHHHHHHhCCC------CCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc
Q psy13204         49 TPEKVAQHIASRCKA------SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF  121 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~------~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~  121 (189)
                      ++..++..|+..+..      |+.++|+|||+|-+++.++.-+ ..|+|+|++|++++.++.|+....+  +++++++|+
T Consensus        28 T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdi  105 (185)
T KOG3420|consen   28 TRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDI  105 (185)
T ss_pred             CcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeec
Confidence            444456555555433      8899999999999998887764 4689999999999999999999988  789999999


Q ss_pred             ccCC-CCCCccEEEECCCCCCCccccccccccccCcCCCCchhHHHHhhhcCCceEEEcCCCCCc
Q psy13204        122 FALA-PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDV  185 (189)
Q Consensus       122 ~~~~-~~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~lp~~~~~  185 (189)
                      .+.- ....||.+++||||+..........+...++-   --.+++..+.-+.+..+-||+..++
T Consensus       106 ldle~~~g~fDtaviNppFGTk~~~aDm~fv~~al~~---~~~VySLHKtSTRey~~kLP~~ykF  167 (185)
T KOG3420|consen  106 LDLELKGGIFDTAVINPPFGTKKKGADMEFVSAALKV---ASAVYSLHKTSTREYRYKLPKLYKF  167 (185)
T ss_pred             cchhccCCeEeeEEecCCCCcccccccHHHHHHHHHH---HHHHHHHhcccHHHHHHhcchhhhh
Confidence            8875 55689999999999863222111111212211   1145555555556666667766554

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.60  E-value=6.3e-15  Score=107.67  Aligned_cols=92  Identities=35%  Similarity=0.502  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCC--e---------EEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Q psy13204         51 EKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQ--K---------VISIDIDPAKLRLAQHNASVYGVSHKIQFI  117 (189)
Q Consensus        51 ~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~--~---------v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  117 (189)
                      +.++..++.....  +..|+|++||+|++.++++..+.  .         ++|.|+++++++.|++|+...++...+.+.
T Consensus        14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~   93 (179)
T PF01170_consen   14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI   93 (179)
T ss_dssp             HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence            5677777666544  78999999999999999987633  3         779999999999999999999997789999


Q ss_pred             eCCcccCC-CCCCccEEEECCCCCCC
Q psy13204        118 QGDFFALA-PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       118 ~~d~~~~~-~~~~~D~v~~npp~~~~  142 (189)
                      +.|+.+.. ....+|+|++||||+..
T Consensus        94 ~~D~~~l~~~~~~~d~IvtnPPyG~r  119 (179)
T PF01170_consen   94 QWDARELPLPDGSVDAIVTNPPYGRR  119 (179)
T ss_dssp             E--GGGGGGTTSBSCEEEEE--STTS
T ss_pred             ecchhhcccccCCCCEEEECcchhhh
Confidence            99999987 66789999999999963

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.59  E-value=2.5e-14  Score=112.79  Aligned_cols=106  Identities=22%  Similarity=0.301  Sum_probs=81.7

Q ss_pred             CcccCCCcccccCh--HHHHHHH-HHhCCC-C-CEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC
Q psy13204         37 ADNDATESWYSVTP--EKVAQHI-ASRCKA-S-DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG  109 (189)
Q Consensus        37 ~~~~~~~~~~~~~~--~~~~~~~-~~~~~~-~-~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~  109 (189)
                      .+.+++..+. +.+  +.+.... ...++. + .+|+|+|||+|.+++.+++.  +.+++++|+|+.+++.|++|+..++
T Consensus       103 ~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~  181 (307)
T PRK11805        103 EFYVDERVLV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG  181 (307)
T ss_pred             EEEECCCCcC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            4556666655 333  2233322 223332 2 68999999999999999887  5689999999999999999999998


Q ss_pred             CCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204        110 VSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       110 ~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~  143 (189)
                      +.++++++++|+.+..+..+||+|++||||....
T Consensus       182 l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~~  215 (307)
T PRK11805        182 LEDRVTLIESDLFAALPGRRYDLIVSNPPYVDAE  215 (307)
T ss_pred             CCCcEEEEECchhhhCCCCCccEEEECCCCCCcc
Confidence            8667999999987765556899999999998754

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.58  E-value=3.2e-14  Score=102.97  Aligned_cols=132  Identities=14%  Similarity=0.241  Sum_probs=98.6

Q ss_pred             cccCCCcccccChHHHHHHHHHhCCC----CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy13204         38 DNDATESWYSVTPEKVAQHIASRCKA----SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSH  112 (189)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~  112 (189)
                      ++.....-..+|.+.+.+.+-+.+.+    +.++||+++|+|.+++++..+|+ .++.||.|..++..+++|+...++..
T Consensus        14 L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~   93 (187)
T COG0742          14 LKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEG   93 (187)
T ss_pred             ccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCcc
Confidence            44445456667777777766666543    78999999999999999988855 69999999999999999999999777


Q ss_pred             ceEEEeCCcccCC--CC--CCccEEEECCCCCCCcccc--cc--ccccccCcCCCCchhHHHHhhhc
Q psy13204        113 KIQFIQGDFFALA--PS--LQGDVVFLSPPWGGPEYAR--SS--FSIDNIFPEQGGGRRLFQVARGI  171 (189)
Q Consensus       113 ~~~~~~~d~~~~~--~~--~~~D~v~~npp~~~~~~~~--~~--~~~~~~l~~~~~g~~~~~~~~~~  171 (189)
                      +++++..|+...+  ..  ..||+|++||||+.--...  ..  .....++.+  +++.+++.....
T Consensus        94 ~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~--~~~iv~E~~~~~  158 (187)
T COG0742          94 EARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKP--GALIVVEHDKDV  158 (187)
T ss_pred             ceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCC--CcEEEEEeCCCc
Confidence            8999999998664  22  2499999999999422211  11  123456744  477777776553

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.57  E-value=3.5e-14  Score=114.23  Aligned_cols=101  Identities=14%  Similarity=0.204  Sum_probs=79.6

Q ss_pred             CCcccccChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCC--CceE
Q psy13204         42 TESWYSVTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS--HKIQ  115 (189)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~  115 (189)
                      +.-|-...-+.-.+.+.+.++.  +.+|||+|||+|.+++.+++.  ..+|+++|.|+.+++.|++|+..++..  .+++
T Consensus       205 ~gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~  284 (378)
T PRK15001        205 ANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCE  284 (378)
T ss_pred             CCccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEE
Confidence            3334333334445666677754  468999999999999999887  568999999999999999999888642  2689


Q ss_pred             EEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204        116 FIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       116 ~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      +..+|..+..+..+||+|++||||+..
T Consensus       285 ~~~~D~l~~~~~~~fDlIlsNPPfh~~  311 (378)
T PRK15001        285 FMINNALSGVEPFRFNAVLCNPPFHQQ  311 (378)
T ss_pred             EEEccccccCCCCCEEEEEECcCcccC
Confidence            999998776555689999999999864

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.57  E-value=8.5e-15  Score=117.72  Aligned_cols=101  Identities=22%  Similarity=0.335  Sum_probs=86.1

Q ss_pred             cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCc
Q psy13204         44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDF  121 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~  121 (189)
                      +||...++ .+..+...++ |++|||++|-||++++.++..|+ +|++||+|..+++.|++|+..||+. .++.++++|+
T Consensus       200 GfFlDqR~-~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dv  277 (393)
T COG1092         200 GFFLDQRD-NRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDV  277 (393)
T ss_pred             eeeHHhHH-HHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhH
Confidence            66666654 4666666667 99999999999999999999998 8999999999999999999999985 3589999999


Q ss_pred             ccCC-----CCCCccEEEECCCCCCCcccc
Q psy13204        122 FALA-----PSLQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       122 ~~~~-----~~~~~D~v~~npp~~~~~~~~  146 (189)
                      ++++     .+.+||+|++|||-...+...
T Consensus       278 f~~l~~~~~~g~~fDlIilDPPsF~r~k~~  307 (393)
T COG1092         278 FKWLRKAERRGEKFDLIILDPPSFARSKKQ  307 (393)
T ss_pred             HHHHHHHHhcCCcccEEEECCcccccCccc
Confidence            9987     456899999999977655443

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.57  E-value=3.7e-14  Score=114.57  Aligned_cols=105  Identities=21%  Similarity=0.276  Sum_probs=82.5

Q ss_pred             CcccCCCccccc-ChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCc
Q psy13204         37 ADNDATESWYSV-TPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHK  113 (189)
Q Consensus        37 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~  113 (189)
                      .+.+++..+... ..+.+.+.+...++++.+|+|+|||+|.+++.+++.  +.+++|+|+|+.+++.|++|+..++.  +
T Consensus       224 ~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--r  301 (423)
T PRK14966        224 RFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--R  301 (423)
T ss_pred             EEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--c
Confidence            455556555421 235566666666666779999999999999998865  67899999999999999999988875  8


Q ss_pred             eEEEeCCcccCC--CCCCccEEEECCCCCCCc
Q psy13204        114 IQFIQGDFFALA--PSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       114 ~~~~~~d~~~~~--~~~~~D~v~~npp~~~~~  143 (189)
                      ++++++|+.+..  ...+||+|++||||....
T Consensus       302 V~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~  333 (423)
T PRK14966        302 VEFAHGSWFDTDMPSEGKWDIIVSNPPYIENG  333 (423)
T ss_pred             EEEEEcchhccccccCCCccEEEECCCCCCcc
Confidence            999999987643  235799999999997644

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.57  E-value=5.7e-14  Score=94.71  Aligned_cols=74  Identities=34%  Similarity=0.467  Sum_probs=65.8

Q ss_pred             CCEEEEecCCCChHHHHHHH--hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc-ccCCCCCCccEEEECC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALAPSLQGDVVFLSP  137 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~D~v~~np  137 (189)
                      +.+|||+|||+|.+++.+++  .+.+++|+|+|+++++.|++++...+...+++++++|+ ........||+|+++.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence            67999999999999999999  59999999999999999999997777777999999999 4444456799999976

...

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.57  E-value=1.7e-14  Score=117.10  Aligned_cols=98  Identities=20%  Similarity=0.300  Sum_probs=77.8

Q ss_pred             cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCc
Q psy13204         44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDF  121 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~  121 (189)
                      +||-..++ .+..+.. +..+.+|||+|||+|++++.++..++ +|+++|+|+.+++.|++|+..+++. .+++++++|+
T Consensus       203 G~flDqr~-~R~~~~~-~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~  280 (396)
T PRK15128        203 GYYLDQRD-SRLATRR-YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV  280 (396)
T ss_pred             CcChhhHH-HHHHHHH-hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH
Confidence            46655433 2333333 34589999999999999998776654 8999999999999999999999984 3789999999


Q ss_pred             ccCC-----CCCCccEEEECCCCCCCc
Q psy13204        122 FALA-----PSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       122 ~~~~-----~~~~~D~v~~npp~~~~~  143 (189)
                      .+.+     ...+||+|++||||...+
T Consensus       281 ~~~l~~~~~~~~~fDlVilDPP~f~~~  307 (396)
T PRK15128        281 FKLLRTYRDRGEKFDVIVMDPPKFVEN  307 (396)
T ss_pred             HHHHHHHHhcCCCCCEEEECCCCCCCC
Confidence            8875     245899999999996544

>PHA03411 putative methyltransferase; Provisional

Probab=99.56  E-value=3e-14  Score=109.16  Aligned_cols=97  Identities=21%  Similarity=0.399  Sum_probs=75.0

Q ss_pred             CCcccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC
Q psy13204         42 TESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG  119 (189)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (189)
                      ...||  ||+.+...+......+.+|||+|||+|.+++.++.+  +.+++++|+++.+++.++++.      .+++++++
T Consensus        45 ~G~Ff--TP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~  116 (279)
T PHA03411         45 SGAFF--TPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITS  116 (279)
T ss_pred             ceeEc--CCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEEC
Confidence            44555  455555444322333679999999999999988775  569999999999999998864      26889999


Q ss_pred             CcccCCCCCCccEEEECCCCCCCcccc
Q psy13204        120 DFFALAPSLQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       120 d~~~~~~~~~~D~v~~npp~~~~~~~~  146 (189)
                      |+.+.....+||+|++||||......+
T Consensus       117 D~~e~~~~~kFDlIIsNPPF~~l~~~d  143 (279)
T PHA03411        117 DVFEFESNEKFDVVISNPPFGKINTTD  143 (279)
T ss_pred             chhhhcccCCCcEEEEcCCccccCchh
Confidence            999876556899999999999865444

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.56  E-value=6.3e-14  Score=109.62  Aligned_cols=107  Identities=21%  Similarity=0.296  Sum_probs=82.2

Q ss_pred             CcccCCCcccc-cChHHHHHHHHHhCC-C--CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCC
Q psy13204         37 ADNDATESWYS-VTPEKVAQHIASRCK-A--SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGV  110 (189)
Q Consensus        37 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-~--~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~  110 (189)
                      .+.+++..+.. ...+.+...+...+. .  ..+|+|+|||+|.+++.++..  +.+++|+|+|+++++.|++|+..+++
T Consensus        84 ~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~  163 (284)
T TIGR00536        84 EFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL  163 (284)
T ss_pred             EEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            35555554432 122455555544332 2  268999999999999999986  46899999999999999999999988


Q ss_pred             CCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204        111 SHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       111 ~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~  143 (189)
                      .++++++++|+.+..+..+||+|++||||....
T Consensus       164 ~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~~  196 (284)
T TIGR00536       164 EHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDEE  196 (284)
T ss_pred             CCcEEEEECchhccCcCCCccEEEECCCCCCcc
Confidence            556999999998765555899999999998754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.55  E-value=4.6e-14  Score=110.69  Aligned_cols=106  Identities=25%  Similarity=0.437  Sum_probs=83.8

Q ss_pred             cCCCcccccCh--HHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceE
Q psy13204         40 DATESWYSVTP--EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQ  115 (189)
Q Consensus        40 ~~~~~~~~~~~--~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~  115 (189)
                      ..++.|+++..  ..+++.+++..  ++|..|+|++||||++.+++.-.|.+++|.|++..|++-|+.|+...++. +..
T Consensus       170 ~~kRPf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~-~~~  248 (347)
T COG1041         170 PEKRPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE-DYP  248 (347)
T ss_pred             cccCCccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcC-cee
Confidence            34445665532  34666665544  44889999999999999999999999999999999999999999999884 444


Q ss_pred             EEeC-CcccCC-CCCCccEEEECCCCCCCcccc
Q psy13204        116 FIQG-DFFALA-PSLQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       116 ~~~~-d~~~~~-~~~~~D~v~~npp~~~~~~~~  146 (189)
                      +... |+.+.+ +..++|.|++||||+.....+
T Consensus       249 ~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~  281 (347)
T COG1041         249 VLKVLDATNLPLRDNSVDAIATDPPYGRSTKIK  281 (347)
T ss_pred             EEEecccccCCCCCCccceEEecCCCCcccccc
Confidence            4444 888876 555799999999999876554

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=7.9e-14  Score=107.50  Aligned_cols=103  Identities=16%  Similarity=0.250  Sum_probs=83.6

Q ss_pred             CcccCCCcccccChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy13204         37 ADNDATESWYSVTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSH  112 (189)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~  112 (189)
                      .+..++.-|.....+.=.+.+++.++.  +..|+|+|||.|.+++.+++..  .+++-+|+|..+++.|+.|+..+++. 
T Consensus       130 ~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-  208 (300)
T COG2813         130 TFKTLPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-  208 (300)
T ss_pred             EEEeCCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-
Confidence            344556666555555556677777765  5599999999999999999985  48999999999999999999999984 


Q ss_pred             ceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204        113 KIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus       113 ~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      +..+..+|..+.... +||.|++||||+.
T Consensus       209 ~~~v~~s~~~~~v~~-kfd~IisNPPfh~  236 (300)
T COG2813         209 NTEVWASNLYEPVEG-KFDLIISNPPFHA  236 (300)
T ss_pred             ccEEEEecccccccc-cccEEEeCCCccC
Confidence            437888888777655 9999999999995

>KOG2187|consensus

Probab=99.54  E-value=1.4e-14  Score=117.74  Aligned_cols=120  Identities=23%  Similarity=0.383  Sum_probs=98.4

Q ss_pred             cchhhhhhhcC-CcccCCCcccccChH---HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHH
Q psy13204         26 GLEYFELTLAD-ADNDATESWYSVTPE---KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR   99 (189)
Q Consensus        26 ~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~   99 (189)
                      +..++.+.+.+ ++.+++.+|||.+..   .+.+.+-+.+  +.++.++|++||+|.+++.+++...+|+|||+++.+++
T Consensus       340 ~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~  419 (534)
T KOG2187|consen  340 GDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVE  419 (534)
T ss_pred             cccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcc
Confidence            56688888876 899999999999763   3334444444  33789999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCceEEEeCCcccCCCC------CCcc-EEEECCCCCCCcccc
Q psy13204        100 LAQHNASVYGVSHKIQFIQGDFFALAPS------LQGD-VVFLSPPWGGPEYAR  146 (189)
Q Consensus       100 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~------~~~D-~v~~npp~~~~~~~~  146 (189)
                      .|+.|+..+|+ .+++|+++-+++..+.      ..-+ ++++|||+.++.+..
T Consensus       420 dA~~nA~~Ngi-sNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~  472 (534)
T KOG2187|consen  420 DAEKNAQINGI-SNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKV  472 (534)
T ss_pred             hhhhcchhcCc-cceeeeecchhhccchhcccCCCCCceEEEECCCcccccHHH
Confidence            99999999999 5999999977765521      1345 889999999877554

>PRK14967 putative methyltransferase; Provisional

Probab=99.53  E-value=1.6e-13  Score=103.69  Aligned_cols=81  Identities=27%  Similarity=0.324  Sum_probs=70.9

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  139 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~  139 (189)
                      +.++.+|||+|||+|.+++.+++.+. +++++|+++.+++.+++|+..++.  +++++++|+.+..+...||+|++||||
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~fD~Vi~npPy  111 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRPFDVVVSNPPY  111 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCCeeEEEECCCC
Confidence            34478999999999999999988765 899999999999999999988876  688999998876666789999999999


Q ss_pred             CCCc
Q psy13204        140 GGPE  143 (189)
Q Consensus       140 ~~~~  143 (189)
                      ....
T Consensus       112 ~~~~  115 (223)
T PRK14967        112 VPAP  115 (223)
T ss_pred             CCCC
Confidence            8654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.53  E-value=2.5e-14  Score=106.64  Aligned_cols=103  Identities=25%  Similarity=0.236  Sum_probs=84.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-CCCccEEEECCCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPWGG  141 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~npp~~~  141 (189)
                      .+.+|||+|||.|.++..+|+.|++|+|+|+++++++.|+..+...++  ++++.+.++++... +.+||+|+|      
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~c------  130 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTC------  130 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEE------
Confidence            389999999999999999999999999999999999999999999988  68889999888863 379999999      


Q ss_pred             CccccccccccccCcCCCCchhHHHHhhhcCCceEEEcCCC
Q psy13204        142 PEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRT  182 (189)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~lp~~  182 (189)
                             .++-+.+|+  ...++..|.+.+.|...+++...
T Consensus       131 -------mEVlEHv~d--p~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         131 -------MEVLEHVPD--PESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             -------hhHHHccCC--HHHHHHHHHHHcCCCcEEEEecc
Confidence                   233334444  24466678888888777776543

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.53  E-value=1.6e-13  Score=105.36  Aligned_cols=103  Identities=23%  Similarity=0.316  Sum_probs=78.0

Q ss_pred             CcccCCCccccc-ChHHHHHHHHHhCCC---CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCC
Q psy13204         37 ADNDATESWYSV-TPEKVAQHIASRCKA---SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGV  110 (189)
Q Consensus        37 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~  110 (189)
                      .+.+++..|... ..+.+.+.+...++.   +.+|+|+|||+|.+++.+++.  +.+++++|+|+.+++.|++|+..++ 
T Consensus        56 ~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-  134 (251)
T TIGR03704        56 RIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-  134 (251)
T ss_pred             EEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-
Confidence            466677777632 224455555544432   458999999999999999876  5689999999999999999998765 


Q ss_pred             CCceEEEeCCcccCCC---CCCccEEEECCCCCCCc
Q psy13204        111 SHKIQFIQGDFFALAP---SLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       111 ~~~~~~~~~d~~~~~~---~~~~D~v~~npp~~~~~  143 (189)
                         .+++++|+.+..+   ...||+|++||||...+
T Consensus       135 ---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~  167 (251)
T TIGR03704       135 ---GTVHEGDLYDALPTALRGRVDILAANAPYVPTD  167 (251)
T ss_pred             ---CEEEEeechhhcchhcCCCEeEEEECCCCCCch
Confidence               3788999877542   24799999999998644

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.53  E-value=2e-13  Score=104.79  Aligned_cols=92  Identities=27%  Similarity=0.434  Sum_probs=77.3

Q ss_pred             HHHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC
Q psy13204         51 EKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS  127 (189)
Q Consensus        51 ~~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  127 (189)
                      +.+...+...+.. +.+|+|+|||+|.++..+++.  ..+++|+|+++.+++.|+.++...++ .++.++++|+.+..+.
T Consensus        74 ~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~  152 (251)
T TIGR03534        74 EELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFEPLPG  152 (251)
T ss_pred             HHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhccCcC
Confidence            4455555555543 568999999999999999987  56899999999999999999998888 4799999999886666


Q ss_pred             CCccEEEECCCCCCCc
Q psy13204        128 LQGDVVFLSPPWGGPE  143 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~  143 (189)
                      .+||+|++||||....
T Consensus       153 ~~fD~Vi~npPy~~~~  168 (251)
T TIGR03534       153 GKFDLIVSNPPYIPEA  168 (251)
T ss_pred             CceeEEEECCCCCchh
Confidence            7899999999998644

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.53  E-value=1.3e-13  Score=115.47  Aligned_cols=81  Identities=23%  Similarity=0.316  Sum_probs=71.2

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      +.+|||+|||+|.+++.++..  +.+++++|+|+.+++.|++|+..+++.++++++++|+.+..+..+||+|++||||..
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~  218 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS  218 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence            468999999999999998875  678999999999999999999988886679999999877655568999999999997


Q ss_pred             Ccc
Q psy13204        142 PEY  144 (189)
Q Consensus       142 ~~~  144 (189)
                      .+.
T Consensus       219 ~~~  221 (506)
T PRK01544        219 HSE  221 (506)
T ss_pred             chh
Confidence            554

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.52  E-value=1.3e-13  Score=109.52  Aligned_cols=91  Identities=31%  Similarity=0.433  Sum_probs=79.8

Q ss_pred             HHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCC-----------------------------------------e
Q psy13204         51 EKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQ-----------------------------------------K   87 (189)
Q Consensus        51 ~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~-----------------------------------------~   87 (189)
                      +.++..|+.+...  +..++|+.||+|++.+++|..+.                                         .
T Consensus       177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~  256 (381)
T COG0116         177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI  256 (381)
T ss_pred             HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence            6677777766655  66899999999999999998763                                         2


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC-CCccEEEECCCCCC
Q psy13204         88 VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFLSPPWGG  141 (189)
Q Consensus        88 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~npp~~~  141 (189)
                      ++|+|+++.+++.|+.|+...|+.+.|+|.++|+.++.+. ..+|+||+||||+.
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGe  311 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGE  311 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcch
Confidence            6799999999999999999999988899999999988754 68999999999995

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.51  E-value=1.6e-13  Score=101.33  Aligned_cols=108  Identities=23%  Similarity=0.361  Sum_probs=76.4

Q ss_pred             CcccCCC-cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHH--hCCeEEEEeCCHHHHHHHHHHHHHhCCCCc
Q psy13204         37 ADNDATE-SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHK  113 (189)
Q Consensus        37 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~  113 (189)
                      .+.+|.. .+|...-..-...++...+++..|+|++||.|.+++.+++  .+..|+++|+||.+++.+++|++.+++.+.
T Consensus        74 ~f~~D~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~  153 (200)
T PF02475_consen   74 RFKVDLSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENR  153 (200)
T ss_dssp             EEEEETTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTT
T ss_pred             EEEEccceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCe
Confidence            5666755 4455443333556667777799999999999999999998  578899999999999999999999999878


Q ss_pred             eEEEeCCcccCCCCCCccEEEECCCCCCCcc
Q psy13204        114 IQFIQGDFFALAPSLQGDVVFLSPPWGGPEY  144 (189)
Q Consensus       114 ~~~~~~d~~~~~~~~~~D~v~~npp~~~~~~  144 (189)
                      +..+++|+.++.+...+|-|+||.|.....+
T Consensus       154 i~~~~~D~~~~~~~~~~drvim~lp~~~~~f  184 (200)
T PF02475_consen  154 IEVINGDAREFLPEGKFDRVIMNLPESSLEF  184 (200)
T ss_dssp             EEEEES-GGG---TT-EEEEEE--TSSGGGG
T ss_pred             EEEEcCCHHHhcCccccCEEEECChHHHHHH
Confidence            9999999999987778999999999775443

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.51  E-value=6.5e-14  Score=108.61  Aligned_cols=98  Identities=27%  Similarity=0.375  Sum_probs=75.3

Q ss_pred             cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCc
Q psy13204         44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDF  121 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~  121 (189)
                      ++|-..++ .+.++....+ +++|||++|-+|++++.++..|+ +|+.||.|..+++.+++|+..+++. ..++++++|+
T Consensus       106 GlFlDqR~-nR~~v~~~~~-gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dv  183 (286)
T PF10672_consen  106 GLFLDQRE-NRKWVRKYAK-GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDV  183 (286)
T ss_dssp             SS-GGGHH-HHHHHHHHCT-TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-H
T ss_pred             eEcHHHHh-hHHHHHHHcC-CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH
Confidence            77777765 4566666554 89999999999999999998886 6999999999999999999999985 4789999999


Q ss_pred             ccCC----CCCCccEEEECCCCCCCc
Q psy13204        122 FALA----PSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       122 ~~~~----~~~~~D~v~~npp~~~~~  143 (189)
                      +++.    ...+||+||+|||-...+
T Consensus       184 f~~l~~~~~~~~fD~IIlDPPsF~k~  209 (286)
T PF10672_consen  184 FKFLKRLKKGGRFDLIILDPPSFAKS  209 (286)
T ss_dssp             HHHHHHHHHTT-EEEEEE--SSEESS
T ss_pred             HHHHHHHhcCCCCCEEEECCCCCCCC
Confidence            8865    346899999999966433

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.51  E-value=2.1e-13  Score=108.87  Aligned_cols=101  Identities=16%  Similarity=0.192  Sum_probs=80.1

Q ss_pred             cccCCCcccccChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCc
Q psy13204         38 DNDATESWYSVTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHK  113 (189)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~  113 (189)
                      +...+..|.+...+.-.+.+.+.+..  ..+|||+|||+|.++..+++..  .+++++|+++.+++.|++++..+++  .
T Consensus       169 i~~~pgvFs~~~lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~  246 (342)
T PRK09489        169 VKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--E  246 (342)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--C
Confidence            44457777776655444555555543  5689999999999999998873  5899999999999999999999887  4


Q ss_pred             eEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204        114 IQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus       114 ~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      .+++.+|..+.. ...||+|++||||+.
T Consensus       247 ~~~~~~D~~~~~-~~~fDlIvsNPPFH~  273 (342)
T PRK09489        247 GEVFASNVFSDI-KGRFDMIISNPPFHD  273 (342)
T ss_pred             CEEEEccccccc-CCCccEEEECCCccC
Confidence            577888876643 468999999999985

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.51  E-value=1.5e-13  Score=99.57  Aligned_cols=76  Identities=24%  Similarity=0.301  Sum_probs=67.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG  141 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~  141 (189)
                      .+.+|+|+|||+|.++..+++.+.+++++|+++.+++.+++++..  . .+++++++|+.+.. +...+|.|++||||+.
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~   89 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKFDLPKLQPYKVVGNLPYNI   89 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcCCccccCCCEEEECCCccc
Confidence            377999999999999999999888999999999999999988753  2 47899999999886 4446999999999986

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.51  E-value=3.7e-13  Score=98.44  Aligned_cols=77  Identities=23%  Similarity=0.352  Sum_probs=68.9

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~  143 (189)
                      +.+|+|+|||+|.++..+++.+.+++++|+++.+++.+++|...++.  +++++++|..+... .+||+|++||||+...
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~fD~Vi~n~p~~~~~   96 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGVR-GKFDVILFNPPYLPLE   96 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccccC-CcccEEEECCCCCCCc
Confidence            67899999999999999999888999999999999999999988876  68899999877643 4899999999998654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.50  E-value=7.5e-14  Score=121.11  Aligned_cols=97  Identities=21%  Similarity=0.272  Sum_probs=79.5

Q ss_pred             cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCc
Q psy13204         44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDF  121 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~  121 (189)
                      ++|-..++ .+..+....+ +.+|||+|||+|.+++.+++.|+ +|+++|+|+.+++.|++|+..+++. .+++++++|+
T Consensus       521 G~flDqr~-~R~~~~~~~~-g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~  598 (702)
T PRK11783        521 GLFLDHRP-TRRMIGQMAK-GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADC  598 (702)
T ss_pred             eECHHHHH-HHHHHHHhcC-CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccH
Confidence            45544443 3455554444 88999999999999999999876 5999999999999999999999985 4799999999


Q ss_pred             ccCCC--CCCccEEEECCCCCCC
Q psy13204        122 FALAP--SLQGDVVFLSPPWGGP  142 (189)
Q Consensus       122 ~~~~~--~~~~D~v~~npp~~~~  142 (189)
                      .++..  ..+||+|++|||+...
T Consensus       599 ~~~l~~~~~~fDlIilDPP~f~~  621 (702)
T PRK11783        599 LAWLKEAREQFDLIFIDPPTFSN  621 (702)
T ss_pred             HHHHHHcCCCcCEEEECCCCCCC
Confidence            87652  4589999999999764

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.49  E-value=8e-14  Score=105.22  Aligned_cols=94  Identities=23%  Similarity=0.330  Sum_probs=76.8

Q ss_pred             CCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  139 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~  139 (189)
                      +|.+|||+|||||.+++.+++..  ++|+|+|+|+.|++.|+++....+.. +++++++|+++.+ ++++||++.+.--.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-~i~fv~~dAe~LPf~D~sFD~vt~~fgl  129 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-NVEFVVGDAENLPFPDNSFDAVTISFGL  129 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-ceEEEEechhhCCCCCCccCEEEeeehh
Confidence            48999999999999999999985  78999999999999999999988774 4999999999998 88999999995444


Q ss_pred             CCCcccc-ccccccccCcC
Q psy13204        140 GGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       140 ~~~~~~~-~~~~~~~~l~~  157 (189)
                      +...... .+.++.+++++
T Consensus       130 rnv~d~~~aL~E~~RVlKp  148 (238)
T COG2226         130 RNVTDIDKALKEMYRVLKP  148 (238)
T ss_pred             hcCCCHHHHHHHHHHhhcC
Confidence            4333222 34456666643

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=2.4e-13  Score=105.29  Aligned_cols=92  Identities=25%  Similarity=0.257  Sum_probs=76.3

Q ss_pred             cccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204         46 YSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  124 (189)
                      +..|...+.+++.....++.+|||+|||+|-+++++++.|+. ++|+|++|-+++.|++|+..|++...++....+..+.
T Consensus       145 ~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~  224 (300)
T COG2264         145 THPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV  224 (300)
T ss_pred             CChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence            445566778888888888999999999999999999999875 9999999999999999999999843344555555555


Q ss_pred             CCCCCccEEEECC
Q psy13204        125 APSLQGDVVFLSP  137 (189)
Q Consensus       125 ~~~~~~D~v~~np  137 (189)
                      ....+||+|++|-
T Consensus       225 ~~~~~~DvIVANI  237 (300)
T COG2264         225 PENGPFDVIVANI  237 (300)
T ss_pred             cccCcccEEEehh
Confidence            5556999999985

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.47  E-value=5.2e-13  Score=95.06  Aligned_cols=80  Identities=28%  Similarity=0.382  Sum_probs=68.8

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC--CCccEEEECC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSP  137 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~v~~np  137 (189)
                      .+.+|||+|||+|.++..+++.   +.+++|+|+|+++++.|+++++..++. +++++++|+.++...  ..||+|+++.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG   81 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence            3679999999999999999943   679999999999999999999999994 899999999995422  6899999998


Q ss_pred             CCCCCc
Q psy13204        138 PWGGPE  143 (189)
Q Consensus       138 p~~~~~  143 (189)
                      +++...
T Consensus        82 ~l~~~~   87 (152)
T PF13847_consen   82 VLHHFP   87 (152)
T ss_dssp             TGGGTS
T ss_pred             chhhcc
Confidence            885533

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.47  E-value=2e-13  Score=101.32  Aligned_cols=94  Identities=15%  Similarity=0.076  Sum_probs=76.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      ++.+|||+|||+|..+..+++++.+|+|+|+|+.+++.++++....++ .++++.+.|+.+......||+|+++..++..
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~  108 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDFILSTVVLMFL  108 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCEEEEecchhhC
Confidence            367999999999999999999999999999999999999999888887 4689999998776544679999998877654


Q ss_pred             cccc---ccccccccCcC
Q psy13204        143 EYAR---SSFSIDNIFPE  157 (189)
Q Consensus       143 ~~~~---~~~~~~~~l~~  157 (189)
                      ....   ....+.+++++
T Consensus       109 ~~~~~~~~l~~i~~~Lkp  126 (197)
T PRK11207        109 EAKTIPGLIANMQRCTKP  126 (197)
T ss_pred             CHHHHHHHHHHHHHHcCC
Confidence            3222   23356666644

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.47  E-value=1.7e-13  Score=101.56  Aligned_cols=95  Identities=18%  Similarity=0.122  Sum_probs=75.5

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~  143 (189)
                      +.+|||+|||+|..+..+++++.+|+|+|+|+.+++.+++++...++  ++++.+.|........+||+|+++.+++...
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~  108 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNEDYDFIFSTVVFMFLQ  108 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCCCCEEEEecccccCC
Confidence            67999999999999999999999999999999999999999888777  4778888876544345799999999988654


Q ss_pred             ccc---ccccccccCcCCCCch
Q psy13204        144 YAR---SSFSIDNIFPEQGGGR  162 (189)
Q Consensus       144 ~~~---~~~~~~~~l~~~~~g~  162 (189)
                      ...   ....+.++|++  ||+
T Consensus       109 ~~~~~~~l~~~~~~Lkp--gG~  128 (195)
T TIGR00477       109 AGRVPEIIANMQAHTRP--GGY  128 (195)
T ss_pred             HHHHHHHHHHHHHHhCC--CcE
Confidence            322   33355666654  454

Part of a tellurite-reducing operon tehA and tehB

>KOG2904|consensus

Probab=99.46  E-value=1.4e-12  Score=98.68  Aligned_cols=117  Identities=17%  Similarity=0.171  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhCCC-----CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc--
Q psy13204         51 EKVAQHIASRCKA-----SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF--  121 (189)
Q Consensus        51 ~~~~~~~~~~~~~-----~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~--  121 (189)
                      |++.+++.+.+..     +..++|+|||+|.+++.++..  -.+++++|.++.++..|.+|+.++++.+.+.+++-+.  
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~  210 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES  210 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence            4566666555433     668999999999999999876  4578999999999999999999999988888885533  


Q ss_pred             --ccCC--CCCCccEEEECCCCCCCcccc------ccccccccCcCCCCchhHHHH
Q psy13204        122 --FALA--PSLQGDVVFLSPPWGGPEYAR------SSFSIDNIFPEQGGGRRLFQV  167 (189)
Q Consensus       122 --~~~~--~~~~~D~v~~npp~~~~~~~~------~~~~~~~~l~~~~~g~~~~~~  167 (189)
                        .+..  .....|++++||||-..+...      +.++....|.+..+|+.++-+
T Consensus       211 d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~  266 (328)
T KOG2904|consen  211 DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVH  266 (328)
T ss_pred             ccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHH
Confidence              3222  346899999999999766544      333333344433345544333

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.45  E-value=1.8e-13  Score=105.52  Aligned_cols=95  Identities=20%  Similarity=0.225  Sum_probs=78.5

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~  140 (189)
                      .+.+|||+|||+|.++..+++.+.+|+++|+++++++.|+++....++..+++++++|+.+..  ...+||+|+++.+++
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~  123 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLE  123 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHH
Confidence            367999999999999999999999999999999999999999988887668999999998764  456899999988877


Q ss_pred             CCcccc-ccccccccCcC
Q psy13204        141 GPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       141 ~~~~~~-~~~~~~~~l~~  157 (189)
                      ...... ....+.+++++
T Consensus       124 ~~~~~~~~l~~~~~~Lkp  141 (255)
T PRK11036        124 WVADPKSVLQTLWSVLRP  141 (255)
T ss_pred             hhCCHHHHHHHHHHHcCC
Confidence            654333 33456667754

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.43  E-value=2.7e-12  Score=99.90  Aligned_cols=92  Identities=27%  Similarity=0.443  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC
Q psy13204         51 EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP  126 (189)
Q Consensus        51 ~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  126 (189)
                      +.+.+.+....  .++.+|+|+|||+|.+++.++...  .+++|+|+++.+++.|++|+. .....++.++++|+.+..+
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~  172 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP  172 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC
Confidence            44555554333  237799999999999999998874  789999999999999999988 3333579999999876555


Q ss_pred             CCCccEEEECCCCCCCc
Q psy13204        127 SLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       127 ~~~~D~v~~npp~~~~~  143 (189)
                      ..+||+|++||||....
T Consensus       173 ~~~fD~Iv~npPy~~~~  189 (275)
T PRK09328        173 GGRFDLIVSNPPYIPEA  189 (275)
T ss_pred             CCceeEEEECCCcCCcc
Confidence            56899999999998644

>PRK14968 putative methyltransferase; Provisional

Probab=99.43  E-value=3.8e-12  Score=93.45  Aligned_cols=81  Identities=27%  Similarity=0.405  Sum_probs=70.8

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCc-eEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHK-IQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      .++.+|||+|||+|.++..++..+.+++++|+++++++.+++++..++..++ +.++++|..+......||+|++||||.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL  101 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence            3478999999999999999998899999999999999999999988877322 889999988766556899999999997


Q ss_pred             CC
Q psy13204        141 GP  142 (189)
Q Consensus       141 ~~  142 (189)
                      ..
T Consensus       102 ~~  103 (188)
T PRK14968        102 PT  103 (188)
T ss_pred             CC
Confidence            63

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.42  E-value=2.2e-12  Score=101.05  Aligned_cols=91  Identities=24%  Similarity=0.297  Sum_probs=76.5

Q ss_pred             HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204         52 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ  129 (189)
Q Consensus        52 ~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  129 (189)
                      .+...+++.+  .++..|+|+|||+|.++..+++.+.+|+++|+|+.+++.+++++...+..++++++++|+.+... ..
T Consensus        23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~  101 (294)
T PTZ00338         23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PY  101 (294)
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cc
Confidence            3555555544  34789999999999999999999899999999999999999998877654689999999988642 46


Q ss_pred             ccEEEECCCCCCCc
Q psy13204        130 GDVVFLSPPWGGPE  143 (189)
Q Consensus       130 ~D~v~~npp~~~~~  143 (189)
                      +|+|++|+||...+
T Consensus       102 ~d~VvaNlPY~Ist  115 (294)
T PTZ00338        102 FDVCVANVPYQISS  115 (294)
T ss_pred             cCEEEecCCcccCc
Confidence            89999999999765

>PLN02244 tocopherol O-methyltransferase

Probab=99.42  E-value=1.2e-12  Score=104.81  Aligned_cols=95  Identities=21%  Similarity=0.220  Sum_probs=77.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~  140 (189)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.++++....++.++++++++|+.+.. ++.+||+|++.-..+
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~  197 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE  197 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence            4789999999999999999986 78999999999999999999988888668999999998875 667899999976655


Q ss_pred             CCcccc-ccccccccCcC
Q psy13204        141 GPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       141 ~~~~~~-~~~~~~~~l~~  157 (189)
                      +..... ....+.+++++
T Consensus       198 h~~d~~~~l~e~~rvLkp  215 (340)
T PLN02244        198 HMPDKRKFVQELARVAAP  215 (340)
T ss_pred             ccCCHHHHHHHHHHHcCC
Confidence            443222 33456666644

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.42  E-value=2.5e-12  Score=94.46  Aligned_cols=78  Identities=21%  Similarity=0.180  Sum_probs=67.9

Q ss_pred             HhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEEC
Q psy13204         59 SRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  136 (189)
Q Consensus        59 ~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~n  136 (189)
                      ..++++.+|||+|||+|..++.+++.  +.+|+++|.++.+++.|++++..+++. +++++++|+.+.....+||+|+++
T Consensus        41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~  119 (187)
T PRK00107         41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSR  119 (187)
T ss_pred             hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEc
Confidence            44555889999999999999999864  679999999999999999999999984 599999999887655689999996


Q ss_pred             C
Q psy13204        137 P  137 (189)
Q Consensus       137 p  137 (189)
                      .
T Consensus       120 ~  120 (187)
T PRK00107        120 A  120 (187)
T ss_pred             c
Confidence            3

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.42  E-value=3.1e-12  Score=105.95  Aligned_cols=83  Identities=27%  Similarity=0.421  Sum_probs=72.7

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  138 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp  138 (189)
                      .++.+|||+|||+|+.+..+++.   +.+|+++|+++.+++.+++++...|+ .+++++++|+.+..+...||+|++|||
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D~P  327 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLDAP  327 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEcCC
Confidence            34889999999999999888764   46899999999999999999999998 479999999988766668999999999


Q ss_pred             CCCCccc
Q psy13204        139 WGGPEYA  145 (189)
Q Consensus       139 ~~~~~~~  145 (189)
                      |.+.+..
T Consensus       328 csg~g~~  334 (445)
T PRK14904        328 CTGTGVL  334 (445)
T ss_pred             CCCcchh
Confidence            9886643

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.41  E-value=1.6e-12  Score=101.46  Aligned_cols=89  Identities=28%  Similarity=0.274  Sum_probs=69.2

Q ss_pred             cChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC
Q psy13204         48 VTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP  126 (189)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  126 (189)
                      .|...+.+.+.....++.+|||+|||+|-+++.+++.|+ +|+|+|++|.+++.|++|+..|++..++.+.  ...+. .
T Consensus       146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~  222 (295)
T PF06325_consen  146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-V  222 (295)
T ss_dssp             HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-C
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-c
Confidence            345667788888878799999999999999999999977 6999999999999999999999996655442  22222 3


Q ss_pred             CCCccEEEECCCC
Q psy13204        127 SLQGDVVFLSPPW  139 (189)
Q Consensus       127 ~~~~D~v~~npp~  139 (189)
                      ..+||+|++|--.
T Consensus       223 ~~~~dlvvANI~~  235 (295)
T PF06325_consen  223 EGKFDLVVANILA  235 (295)
T ss_dssp             CS-EEEEEEES-H
T ss_pred             cccCCEEEECCCH
Confidence            4789999998544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.41  E-value=1.6e-12  Score=102.58  Aligned_cols=81  Identities=22%  Similarity=0.183  Sum_probs=65.6

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEe-CCcccCC-----CCCCccEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQ-GDFFALA-----PSLQGDVVF  134 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~-~d~~~~~-----~~~~~D~v~  134 (189)
                      +.++||+|||+|.+...++..  +.+++|+|+++.+++.|++|+..+ ++.+++++++ .|..+..     +...||+|+
T Consensus       115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv  194 (321)
T PRK11727        115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL  194 (321)
T ss_pred             CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence            579999999999887777654  789999999999999999999999 7877788864 3333322     345899999


Q ss_pred             ECCCCCCCcc
Q psy13204        135 LSPPWGGPEY  144 (189)
Q Consensus       135 ~npp~~~~~~  144 (189)
                      +||||.....
T Consensus       195 cNPPf~~s~~  204 (321)
T PRK11727        195 CNPPFHASAA  204 (321)
T ss_pred             eCCCCcCcch
Confidence            9999997543

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.40  E-value=3.8e-12  Score=98.55  Aligned_cols=83  Identities=18%  Similarity=0.251  Sum_probs=71.4

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  137 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~np  137 (189)
                      +++.+|||+|||+|+.+..+++.   ...|+++|+++.+++.+++|+...++ .++.+++.|+.+.. ....||+|++||
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D~  148 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLDA  148 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEcC
Confidence            45889999999999999998875   35899999999999999999999998 47999999987654 334699999999


Q ss_pred             CCCCCccc
Q psy13204        138 PWGGPEYA  145 (189)
Q Consensus       138 p~~~~~~~  145 (189)
                      ||.+.+..
T Consensus       149 Pcsg~G~~  156 (264)
T TIGR00446       149 PCSGEGVI  156 (264)
T ss_pred             CCCCCccc
Confidence            99986544

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.40  E-value=1.1e-12  Score=103.55  Aligned_cols=115  Identities=22%  Similarity=0.273  Sum_probs=94.9

Q ss_pred             hhhhhhcCCcccCCC-cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHH
Q psy13204         29 YFELTLADADNDATE-SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNAS  106 (189)
Q Consensus        29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~  106 (189)
                      .++.+....+++|.. .+|...-..-...++.....|.+|+|++||.|.+++.+|+.|.. |+++|+||.+++++++|++
T Consensus       153 TihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~  232 (341)
T COG2520         153 TIHRENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIR  232 (341)
T ss_pred             EEEecCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHH
Confidence            344455556788755 56665544446667777777999999999999999999999776 9999999999999999999


Q ss_pred             HhCCCCceEEEeCCcccCCCC-CCccEEEECCCCCCCc
Q psy13204        107 VYGVSHKIQFIQGDFFALAPS-LQGDVVFLSPPWGGPE  143 (189)
Q Consensus       107 ~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~npp~~~~~  143 (189)
                      .|++.+.+..+++|+.+..+. ..+|-|+|+.|.....
T Consensus       233 LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~~a~~  270 (341)
T COG2520         233 LNKVEGRVEPILGDAREVAPELGVADRIIMGLPKSAHE  270 (341)
T ss_pred             hcCccceeeEEeccHHHhhhccccCCEEEeCCCCcchh
Confidence            999976799999999999865 7899999998875433

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.40  E-value=1.1e-12  Score=96.14  Aligned_cols=99  Identities=20%  Similarity=0.178  Sum_probs=72.4

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~  143 (189)
                      +.++||+|||.|+.++++|++|..|+++|+|+.+++.+++.+...++  +++..+.|+.+......||+|++.-.+....
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~  108 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDFPEEYDFIVSTVVFMFLQ  108 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS-TTTEEEEEEESSGGGS-
T ss_pred             CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhccccCCcCEEEEEEEeccCC
Confidence            77999999999999999999999999999999999999988888888  6999999998877557899998754444433


Q ss_pred             ccc---ccccccccCcCCCCchhHHH
Q psy13204        144 YAR---SSFSIDNIFPEQGGGRRLFQ  166 (189)
Q Consensus       144 ~~~---~~~~~~~~l~~~~~g~~~~~  166 (189)
                      ...   ....+...+..  ||+.++.
T Consensus       109 ~~~~~~i~~~m~~~~~p--GG~~li~  132 (192)
T PF03848_consen  109 RELRPQIIENMKAATKP--GGYNLIV  132 (192)
T ss_dssp             GGGHHHHHHHHHHTEEE--EEEEEEE
T ss_pred             HHHHHHHHHHHHhhcCC--cEEEEEE
Confidence            222   12234444433  4665543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.39  E-value=2.2e-12  Score=100.26  Aligned_cols=88  Identities=19%  Similarity=0.206  Sum_probs=71.2

Q ss_pred             HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC-
Q psy13204         52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-  128 (189)
Q Consensus        52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-  128 (189)
                      .+.+.+++.+.  ++.+|+|+|||+|.++..+++.+.+|+|+|+++.+++.++++...    .+++++++|+.+..... 
T Consensus        29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~  104 (272)
T PRK00274         29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSEL  104 (272)
T ss_pred             HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHc
Confidence            45555655543  478999999999999999999988999999999999999887632    47999999999875222 


Q ss_pred             CccEEEECCCCCCCc
Q psy13204        129 QGDVVFLSPPWGGPE  143 (189)
Q Consensus       129 ~~D~v~~npp~~~~~  143 (189)
                      .++.|++||||....
T Consensus       105 ~~~~vv~NlPY~iss  119 (272)
T PRK00274        105 QPLKVVANLPYNITT  119 (272)
T ss_pred             CcceEEEeCCccchH
Confidence            258999999998743

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.39  E-value=8.6e-12  Score=90.00  Aligned_cols=88  Identities=30%  Similarity=0.479  Sum_probs=76.8

Q ss_pred             cChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204         48 VTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  123 (189)
Q Consensus        48 ~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  123 (189)
                      .|.++++......+..  +.+++|+|||+|+.+++++..  ..+|+++|.++++++..++|....++ ++++++.+++-+
T Consensus        17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~   95 (187)
T COG2242          17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPE   95 (187)
T ss_pred             CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchH
Confidence            4667778777776654  889999999999999999955  57899999999999999999999997 799999999999


Q ss_pred             CCCCC-CccEEEEC
Q psy13204        124 LAPSL-QGDVVFLS  136 (189)
Q Consensus       124 ~~~~~-~~D~v~~n  136 (189)
                      .+++. ++|.||+.
T Consensus        96 ~L~~~~~~daiFIG  109 (187)
T COG2242          96 ALPDLPSPDAIFIG  109 (187)
T ss_pred             hhcCCCCCCEEEEC
Confidence            87544 69999994

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.39  E-value=4.8e-12  Score=97.71  Aligned_cols=87  Identities=21%  Similarity=0.281  Sum_probs=72.3

Q ss_pred             HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204         52 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ  129 (189)
Q Consensus        52 ~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  129 (189)
                      .+.+.+++.+  .++.+|+|+|||+|.++..+++.+.+++++|+++.+++.+++++..  . .+++++++|+.+.. ...
T Consensus        16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~-~~~   91 (258)
T PRK14896         16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVD-LPE   91 (258)
T ss_pred             HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCC-chh
Confidence            3555565554  3478999999999999999999988999999999999999988754  2 47999999998864 235


Q ss_pred             ccEEEECCCCCCC
Q psy13204        130 GDVVFLSPPWGGP  142 (189)
Q Consensus       130 ~D~v~~npp~~~~  142 (189)
                      +|.|++||||+..
T Consensus        92 ~d~Vv~NlPy~i~  104 (258)
T PRK14896         92 FNKVVSNLPYQIS  104 (258)
T ss_pred             ceEEEEcCCcccC
Confidence            8999999999864

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.38  E-value=3.1e-12  Score=93.65  Aligned_cols=73  Identities=19%  Similarity=0.202  Sum_probs=65.1

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  137 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~np  137 (189)
                      +.+|+|+|||+|..++.++..  ..+|+|+|.++.+++.++++++..++ .+++++++|+.+.....+||+|+++.
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~~~~~fD~I~s~~  117 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQHEEQFDVITSRA  117 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhccccCCccEEEehh
Confidence            889999999999999998866  46899999999999999999998888 47999999998875557899999986

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.38  E-value=5.9e-13  Score=103.22  Aligned_cols=114  Identities=18%  Similarity=0.258  Sum_probs=71.4

Q ss_pred             cchhhhhhhcCCcccCCCcccccChH---H----HHHHHHHh--CCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCH
Q psy13204         26 GLEYFELTLADADNDATESWYSVTPE---K----VAQHIASR--CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDP   95 (189)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~--~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~   95 (189)
                      +.+++...++..+.++. ++|....+   +    ..+.+.+.  +++|.+|||+|||.|++++.+++. |.+|+|+.+|+
T Consensus        17 ~ndfy~l~Ld~~m~YS~-~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~   95 (273)
T PF02353_consen   17 GNDFYRLFLDPTMKYSC-AYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSE   95 (273)
T ss_dssp             -HHHHTTTS-TT---S-----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-H
T ss_pred             cHHHHHHhcCCCCCCCC-eecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCH
Confidence            44555555555555443 33333222   1    22333443  345999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204         96 AKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        96 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      +..+.+++.+...|+.+.+++.+.|..+...  +||.|++--.+.+.
T Consensus        96 ~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~fD~IvSi~~~Ehv  140 (273)
T PF02353_consen   96 EQAEYARERIREAGLEDRVEVRLQDYRDLPG--KFDRIVSIEMFEHV  140 (273)
T ss_dssp             HHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGT
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEeeccccCC--CCCEEEEEechhhc
Confidence            9999999999999998889999999988743  99999985444443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.38  E-value=3.7e-12  Score=96.68  Aligned_cols=102  Identities=17%  Similarity=0.230  Sum_probs=76.9

Q ss_pred             HHHHHhCC--CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204         55 QHIASRCK--ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL  128 (189)
Q Consensus        55 ~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~  128 (189)
                      +.++..+.  ++.+|||+|||+|.++..+++.   +.+++|+|+++.+++.|+++....+. .+++++++|+.+.. +..
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~  113 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDN  113 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCC
Confidence            33444443  4789999999999999999876   35899999999999999999887777 58999999998765 557


Q ss_pred             CccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204        129 QGDVVFLSPPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~-~~~~~~~~l~~  157 (189)
                      +||+|+++.+++...... ....+.++|++
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~  143 (231)
T TIGR02752       114 SFDYVTIGFGLRNVPDYMQVLREMYRVVKP  143 (231)
T ss_pred             CccEEEEecccccCCCHHHHHHHHHHHcCc
Confidence            899999987766533222 22234445543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.38  E-value=1.1e-11  Score=93.25  Aligned_cols=88  Identities=18%  Similarity=0.159  Sum_probs=71.9

Q ss_pred             HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCC---eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204         53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P  126 (189)
Q Consensus        53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~  126 (189)
                      ....+.+.+  +++.+|||+|||+|.++..+++...   +|+++|+++++++.|++++...++ ++++++++|..+.. .
T Consensus        65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~  143 (215)
T TIGR00080        65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP  143 (215)
T ss_pred             HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc
Confidence            334444443  3488999999999999999998743   499999999999999999999988 68999999998754 3


Q ss_pred             CCCccEEEECCCCCC
Q psy13204        127 SLQGDVVFLSPPWGG  141 (189)
Q Consensus       127 ~~~~D~v~~npp~~~  141 (189)
                      ...||+|+++++...
T Consensus       144 ~~~fD~Ii~~~~~~~  158 (215)
T TIGR00080       144 LAPYDRIYVTAAGPK  158 (215)
T ss_pred             cCCCCEEEEcCCccc
Confidence            458999999877654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.38  E-value=5.7e-12  Score=95.67  Aligned_cols=73  Identities=34%  Similarity=0.511  Sum_probs=55.5

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL  135 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~  135 (189)
                      .++.+|||+|||+|..+..+++.   ..+|+|+|+|+.|++.|+++....+. .+++++++|+.+.+ ++++||+|++
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~~da~~lp~~d~sfD~v~~  122 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-QNIEFVQGDAEDLPFPDNSFDAVTC  122 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-CCeeEEEcCHHHhcCCCCceeEEEH
Confidence            44889999999999999999876   35899999999999999999998877 49999999999987 7789999998

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.37  E-value=1.8e-12  Score=99.48  Aligned_cols=98  Identities=20%  Similarity=0.193  Sum_probs=76.5

Q ss_pred             HhCCCCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEE
Q psy13204         59 SRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF  134 (189)
Q Consensus        59 ~~~~~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~  134 (189)
                      ..++++.+|||+|||+|..+..+++.    +.+++|+|+|+.|++.|++++...+...+++++++|+.+... ..+|+|+
T Consensus        52 ~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv  130 (247)
T PRK15451         52 RFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVV  130 (247)
T ss_pred             HhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEe
Confidence            34556889999999999999888762    579999999999999999999888775689999999987643 4589999


Q ss_pred             ECCCCCCCcccc---ccccccccCcC
Q psy13204        135 LSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       135 ~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      ++...+......   ....+.+.|++
T Consensus       131 ~~~~l~~l~~~~~~~~l~~i~~~Lkp  156 (247)
T PRK15451        131 LNFTLQFLEPSERQALLDKIYQGLNP  156 (247)
T ss_pred             hhhHHHhCCHHHHHHHHHHHHHhcCC
Confidence            988777654322   23345556643

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.37  E-value=6.7e-13  Score=105.06  Aligned_cols=99  Identities=18%  Similarity=0.131  Sum_probs=77.4

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~  142 (189)
                      +.+|||+|||+|.++..+++.+.+|+|+|.++++++.|+.+....+...+++++++|+.+.. +..+||+|++.-..++.
T Consensus       132 g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv  211 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV  211 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence            66999999999999999999899999999999999999988776655457999999998765 45689999996666554


Q ss_pred             cccc-ccccccccCcCCCCchhH
Q psy13204        143 EYAR-SSFSIDNIFPEQGGGRRL  164 (189)
Q Consensus       143 ~~~~-~~~~~~~~l~~~~~g~~~  164 (189)
                      .... ....+.+++++  ||..+
T Consensus       212 ~d~~~~L~~l~r~LkP--GG~li  232 (322)
T PLN02396        212 ANPAEFCKSLSALTIP--NGATV  232 (322)
T ss_pred             CCHHHHHHHHHHHcCC--CcEEE
Confidence            4333 34456666744  35544

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.37  E-value=1.3e-12  Score=100.41  Aligned_cols=99  Identities=15%  Similarity=0.169  Sum_probs=75.1

Q ss_pred             HHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCC
Q psy13204         53 VAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQ  129 (189)
Q Consensus        53 ~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~  129 (189)
                      +...+++.++.  +.+|||+|||+|.++..+++.+.+++++|+|+.+++.++++..      ...++++|+.+.+ +..+
T Consensus        30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~  103 (251)
T PRK10258         30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATAT  103 (251)
T ss_pred             HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCc
Confidence            44455555543  6789999999999999998889999999999999999887642      3467889988765 5568


Q ss_pred             ccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204        130 GDVVFLSPPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       130 ~D~v~~npp~~~~~~~~-~~~~~~~~l~~  157 (189)
                      ||+|+++.++++..... ....+.+++++
T Consensus       104 fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~  132 (251)
T PRK10258        104 FDLAWSNLAVQWCGNLSTALRELYRVVRP  132 (251)
T ss_pred             EEEEEECchhhhcCCHHHHHHHHHHHcCC
Confidence            99999999888654333 23345556644

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.35  E-value=1.6e-12  Score=101.93  Aligned_cols=95  Identities=19%  Similarity=0.127  Sum_probs=76.2

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~  143 (189)
                      +.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.+++++...++  ++++.+.|+.......+||+|++...++...
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~  198 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMFLN  198 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhhCC
Confidence            56999999999999999999999999999999999999999988887  7888888887654456899999988777544


Q ss_pred             ccc---ccccccccCcCCCCch
Q psy13204        144 YAR---SSFSIDNIFPEQGGGR  162 (189)
Q Consensus       144 ~~~---~~~~~~~~l~~~~~g~  162 (189)
                      ...   ....+.+++++  ||+
T Consensus       199 ~~~~~~~l~~~~~~Lkp--gG~  218 (287)
T PRK12335        199 RERIPAIIKNMQEHTNP--GGY  218 (287)
T ss_pred             HHHHHHHHHHHHHhcCC--CcE
Confidence            222   23345566644  355

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.35  E-value=7e-12  Score=108.93  Aligned_cols=92  Identities=30%  Similarity=0.422  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhCCC---CCEEEEecCCCChHHHHHHHhC------------------------------------------
Q psy13204         51 EKVAQHIASRCKA---SDVVIDGFCGCGGNTIQFAAVC------------------------------------------   85 (189)
Q Consensus        51 ~~~~~~~~~~~~~---~~~vlD~g~G~G~~~~~~~~~~------------------------------------------   85 (189)
                      +.++..++.....   +..++|++||+|++.++++..+                                          
T Consensus       175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~  254 (702)
T PRK11783        175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE  254 (702)
T ss_pred             HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence            6677766665543   6799999999999999997631                                          


Q ss_pred             --CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC---CCCccEEEECCCCCCC
Q psy13204         86 --QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSPPWGGP  142 (189)
Q Consensus        86 --~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~npp~~~~  142 (189)
                        .+++|+|+++.+++.|+.|+..+|+.+.+++.++|+.+...   ..++|+|++||||...
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r  316 (702)
T PRK11783        255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER  316 (702)
T ss_pred             cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc
Confidence              25899999999999999999999997779999999988752   2469999999999863

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.35  E-value=8.9e-12  Score=102.65  Aligned_cols=84  Identities=23%  Similarity=0.285  Sum_probs=72.8

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEEC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLS  136 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~n  136 (189)
                      .++.+|||+|||+|+.+..++..   +.+|+++|+++.+++.+++|+...|+ .+++++++|+.+..  ...+||.|++|
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~Da~~l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIADAERLTEYVQDTFDRILVD  314 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhhhhhhhhccCCEEEEC
Confidence            44889999999999999999875   57899999999999999999999998 46899999988764  24579999999


Q ss_pred             CCCCCCcccc
Q psy13204        137 PPWGGPEYAR  146 (189)
Q Consensus       137 pp~~~~~~~~  146 (189)
                      |||.+.+...
T Consensus       315 aPCsg~G~~~  324 (431)
T PRK14903        315 APCTSLGTAR  324 (431)
T ss_pred             CCCCCCcccc
Confidence            9998876543

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.35  E-value=3.1e-12  Score=98.43  Aligned_cols=95  Identities=15%  Similarity=0.171  Sum_probs=79.1

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  139 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~  139 (189)
                      +++|.+|||+|||.|.+++.+|+. +.+|+|+++|++..+.+++.+...|+..+++++..|..++.+  .||.|++=-.|
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e--~fDrIvSvgmf  147 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE--PFDRIVSVGMF  147 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc--ccceeeehhhH
Confidence            355999999999999999999998 899999999999999999999999997789999999988843  49999997777


Q ss_pred             CCCcccc---ccccccccCcC
Q psy13204        140 GGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       140 ~~~~~~~---~~~~~~~~l~~  157 (189)
                      .+.+...   ......++|++
T Consensus       148 Ehvg~~~~~~ff~~~~~~L~~  168 (283)
T COG2230         148 EHVGKENYDDFFKKVYALLKP  168 (283)
T ss_pred             HHhCcccHHHHHHHHHhhcCC
Confidence            7666533   22235556644

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.33  E-value=2.9e-12  Score=98.80  Aligned_cols=92  Identities=18%  Similarity=0.135  Sum_probs=72.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|+++        +++++++|+.+..+..+||+|+++..++
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~fD~v~~~~~l~  100 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDTDVVVSNAALQ  100 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCceEEEEehhhh
Confidence            3789999999999999999887  67999999999999998652        5688999998776567899999999998


Q ss_pred             CCcccc-ccccccccCcCCCCchhH
Q psy13204        141 GPEYAR-SSFSIDNIFPEQGGGRRL  164 (189)
Q Consensus       141 ~~~~~~-~~~~~~~~l~~~~~g~~~  164 (189)
                      +..... ....+.+.|++  ||..+
T Consensus       101 ~~~d~~~~l~~~~~~Lkp--gG~l~  123 (255)
T PRK14103        101 WVPEHADLLVRWVDELAP--GSWIA  123 (255)
T ss_pred             hCCCHHHHHHHHHHhCCC--CcEEE
Confidence            764333 33345566644  35533

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=99.33  E-value=7.3e-12  Score=99.22  Aligned_cols=97  Identities=29%  Similarity=0.501  Sum_probs=70.6

Q ss_pred             cChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHH---------hCCeEEEEeCCHHHHHHHHHHHHHhCCCCc-eE
Q psy13204         48 VTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAA---------VCQKVISIDIDPAKLRLAQHNASVYGVSHK-IQ  115 (189)
Q Consensus        48 ~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~  115 (189)
                      .||..+.++++..+..  +.+|+|++||+|++..++.+         ...+++|+|+++.++..|+.|+...+.... ..
T Consensus        29 ~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~  108 (311)
T PF02384_consen   29 YTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN  108 (311)
T ss_dssp             ---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred             ehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence            3777888888888765  66899999999999999876         256899999999999999999887776322 46


Q ss_pred             EEeCCcccCCC---CCCccEEEECCCCCCCcc
Q psy13204        116 FIQGDFFALAP---SLQGDVVFLSPPWGGPEY  144 (189)
Q Consensus       116 ~~~~d~~~~~~---~~~~D~v~~npp~~~~~~  144 (189)
                      +.++|.+....   ...||+|++||||...++
T Consensus       109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~  140 (311)
T PF02384_consen  109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEW  140 (311)
T ss_dssp             EEES-TTTSHSCTST--EEEEEEE--CTCES-
T ss_pred             ccccccccccccccccccccccCCCCcccccc
Confidence            88999876642   358999999999998743

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.33  E-value=2.7e-11  Score=99.91  Aligned_cols=80  Identities=25%  Similarity=0.392  Sum_probs=69.3

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEEC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLS  136 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~n  136 (189)
                      .++.+|||+|||+|+.+..+++.+  .+|+++|+++.+++.+++|+...|+  +++++++|+.+..   +..+||.|++|
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D  320 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILLD  320 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEEC
Confidence            348899999999999999998874  5899999999999999999999887  4789999998653   34579999999


Q ss_pred             CCCCCCc
Q psy13204        137 PPWGGPE  143 (189)
Q Consensus       137 pp~~~~~  143 (189)
                      |||.+.+
T Consensus       321 ~Pcs~~G  327 (427)
T PRK10901        321 APCSATG  327 (427)
T ss_pred             CCCCccc
Confidence            9998644

>PLN02672 methionine S-methyltransferase

Probab=99.32  E-value=6.4e-12  Score=111.89  Aligned_cols=81  Identities=21%  Similarity=0.286  Sum_probs=68.9

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCC---------------CceEEEeCCcccCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS---------------HKIQFIQGDFFALAP  126 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~d~~~~~~  126 (189)
                      +.+|+|+|||+|.+++.+++.  ..+|+|+|+|+.+++.|++|+..+++.               ++++++++|+.+..+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            468999999999999999886  368999999999999999999886532               368999999988764


Q ss_pred             C--CCccEEEECCCCCCCcc
Q psy13204        127 S--LQGDVVFLSPPWGGPEY  144 (189)
Q Consensus       127 ~--~~~D~v~~npp~~~~~~  144 (189)
                      .  ..||+|++||||-....
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e  218 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPN  218 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcc
Confidence            3  36999999999987554

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.32  E-value=5.2e-11  Score=88.95  Aligned_cols=89  Identities=13%  Similarity=0.072  Sum_probs=72.5

Q ss_pred             HHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204         53 VAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P  126 (189)
Q Consensus        53 ~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~  126 (189)
                      +...+.+.+.  ++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|++|+...++..+++++++|..+.. .
T Consensus        60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~  139 (205)
T PRK13944         60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK  139 (205)
T ss_pred             HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence            4455555543  4789999999999999998876   36899999999999999999998887556899999998755 3


Q ss_pred             CCCccEEEECCCCCC
Q psy13204        127 SLQGDVVFLSPPWGG  141 (189)
Q Consensus       127 ~~~~D~v~~npp~~~  141 (189)
                      ...||+|+++.+...
T Consensus       140 ~~~fD~Ii~~~~~~~  154 (205)
T PRK13944        140 HAPFDAIIVTAAAST  154 (205)
T ss_pred             CCCccEEEEccCcch
Confidence            458999999876543

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.32  E-value=1.3e-11  Score=95.44  Aligned_cols=96  Identities=19%  Similarity=0.249  Sum_probs=72.2

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHH--hCCCCceEEEeCCcccCC-CCCCccEEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASV--YGVSHKIQFIQGDFFALA-PSLQGDVVFL  135 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~-~--~~v~~vD~~~~~~~~a~~~~~~--~~~~~~~~~~~~d~~~~~-~~~~~D~v~~  135 (189)
                      +++.+|||+|||+|.++..+++. +  .+|+|+|+|++|++.|+++...  .+...+++++++|+.+.+ ++.+||+|++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~  151 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM  151 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence            44889999999999999998876 3  5899999999999999877542  222247899999998876 5678999999


Q ss_pred             CCCCCCCcccc-ccccccccCcC
Q psy13204        136 SPPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       136 npp~~~~~~~~-~~~~~~~~l~~  157 (189)
                      +-.++...... ....+.++|++
T Consensus       152 ~~~l~~~~d~~~~l~ei~rvLkp  174 (261)
T PLN02233        152 GYGLRNVVDRLKAMQEMYRVLKP  174 (261)
T ss_pred             ecccccCCCHHHHHHHHHHHcCc
Confidence            76665543222 33456666644

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.31  E-value=4.5e-12  Score=97.79  Aligned_cols=89  Identities=20%  Similarity=0.244  Sum_probs=71.8

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.|+++.      .++.++.+|+.++.+..+||+|+++..++
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~~l~  104 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALDLIFANASLQ  104 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCccEEEEccChh
Confidence            3789999999999999999886  578999999999999998764      36789999998776667899999999988


Q ss_pred             CCcccc-ccccccccCcC
Q psy13204        141 GPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       141 ~~~~~~-~~~~~~~~l~~  157 (189)
                      +..... ....+.+.|++
T Consensus       105 ~~~d~~~~l~~~~~~Lkp  122 (258)
T PRK01683        105 WLPDHLELFPRLVSLLAP  122 (258)
T ss_pred             hCCCHHHHHHHHHHhcCC
Confidence            764333 33445566644

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.31  E-value=2.6e-11  Score=100.19  Aligned_cols=83  Identities=23%  Similarity=0.336  Sum_probs=71.5

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVV  133 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v  133 (189)
                      +++.+|||+|||+|+.+..+++.   ..+|+++|+++.+++.+++|+...|+ .+++++++|+.+..     ...+||.|
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCCEE
Confidence            34889999999999999999876   35899999999999999999999998 47999999998764     13579999


Q ss_pred             EECCCCCCCccc
Q psy13204        134 FLSPPWGGPEYA  145 (189)
Q Consensus       134 ~~npp~~~~~~~  145 (189)
                      ++||||.+.+..
T Consensus       330 l~DaPCSg~G~~  341 (434)
T PRK14901        330 LLDAPCSGLGTL  341 (434)
T ss_pred             EEeCCCCccccc
Confidence            999999876543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.30  E-value=5.3e-11  Score=88.40  Aligned_cols=90  Identities=26%  Similarity=0.420  Sum_probs=72.8

Q ss_pred             cChHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcc
Q psy13204         48 VTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF  122 (189)
Q Consensus        48 ~~~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  122 (189)
                      .+.++++......+.  ++.+|+|+|||+|.+++.+++.   +.+|+++|+++.+++.+++|+..+++..++.++++|..
T Consensus        23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~  102 (198)
T PRK00377         23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP  102 (198)
T ss_pred             CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence            455666665555543  4889999999999999999875   46899999999999999999999886568999999987


Q ss_pred             cCCC--CCCccEEEECC
Q psy13204        123 ALAP--SLQGDVVFLSP  137 (189)
Q Consensus       123 ~~~~--~~~~D~v~~np  137 (189)
                      +..+  ...||.|+++.
T Consensus       103 ~~l~~~~~~~D~V~~~~  119 (198)
T PRK00377        103 EILFTINEKFDRIFIGG  119 (198)
T ss_pred             hhHhhcCCCCCEEEECC
Confidence            7542  35799999964

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.30  E-value=1.4e-11  Score=99.79  Aligned_cols=95  Identities=23%  Similarity=0.315  Sum_probs=75.3

Q ss_pred             CcccccChH---HHHHHHHHhCCC---CCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCce
Q psy13204         43 ESWYSVTPE---KVAQHIASRCKA---SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKI  114 (189)
Q Consensus        43 ~~~~~~~~~---~~~~~~~~~~~~---~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~  114 (189)
                      ..|||....   .+...+++.+..   +.+|+|++||+|.+++.++...  .+|+++|+++.+++.+++|++.+++ .++
T Consensus        31 ~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-~~~  109 (382)
T PRK04338         31 PVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-ENE  109 (382)
T ss_pred             CeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-Cce
Confidence            478887653   233344443332   3689999999999999998763  3899999999999999999999998 467


Q ss_pred             EEEeCCcccCCC-CCCccEEEECCC
Q psy13204        115 QFIQGDFFALAP-SLQGDVVFLSPP  138 (189)
Q Consensus       115 ~~~~~d~~~~~~-~~~~D~v~~npp  138 (189)
                      ++.++|+...+. ...||+|++|||
T Consensus       110 ~v~~~Da~~~l~~~~~fD~V~lDP~  134 (382)
T PRK04338        110 KVFNKDANALLHEERKFDVVDIDPF  134 (382)
T ss_pred             EEEhhhHHHHHhhcCCCCEEEECCC
Confidence            899999977654 467999999997

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.30  E-value=4.7e-11  Score=90.02  Aligned_cols=74  Identities=24%  Similarity=0.327  Sum_probs=64.9

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  138 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp  138 (189)
                      ++.+|||+|||+|.++..++..+.+++|+|++++++..|++++...+...++.+.++|+.+..  .+||+|++.-.
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~  128 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDV  128 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhH
Confidence            378999999999999999998888999999999999999999987776557999999988764  78999987433

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.29  E-value=8e-11  Score=86.66  Aligned_cols=91  Identities=25%  Similarity=0.335  Sum_probs=72.9

Q ss_pred             ccChHHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcc
Q psy13204         47 SVTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF  122 (189)
Q Consensus        47 ~~~~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  122 (189)
                      ..+.+.+...+...+  .++.+|||+|||+|.+++.+++.  ..+++++|+++.+++.|++|+..+++ .+++++++|..
T Consensus        13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~   91 (187)
T PRK08287         13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAP   91 (187)
T ss_pred             CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCch
Confidence            345666666665554  34889999999999999999887  46899999999999999999988887 47999999875


Q ss_pred             cCCCCCCccEEEECCCC
Q psy13204        123 ALAPSLQGDVVFLSPPW  139 (189)
Q Consensus       123 ~~~~~~~~D~v~~npp~  139 (189)
                      ... ...||+|+++...
T Consensus        92 ~~~-~~~~D~v~~~~~~  107 (187)
T PRK08287         92 IEL-PGKADAIFIGGSG  107 (187)
T ss_pred             hhc-CcCCCEEEECCCc
Confidence            433 3579999997543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.29  E-value=3.8e-11  Score=99.49  Aligned_cols=82  Identities=28%  Similarity=0.410  Sum_probs=70.8

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--CCCccEEEEC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLS  136 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~n  136 (189)
                      .++.+|||+|||+|+.+..+++.   ..+++++|+++.+++.+++|+...|+. +++++++|+.+...  ...||+|++|
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D  327 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILVD  327 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEEc
Confidence            34789999999999999999875   468999999999999999999999984 69999999987642  2579999999


Q ss_pred             CCCCCCcc
Q psy13204        137 PPWGGPEY  144 (189)
Q Consensus       137 pp~~~~~~  144 (189)
                      |||.+.+.
T Consensus       328 ~Pcsg~G~  335 (444)
T PRK14902        328 APCSGLGV  335 (444)
T ss_pred             CCCCCCee
Confidence            99987553

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.29  E-value=4.8e-11  Score=93.56  Aligned_cols=88  Identities=25%  Similarity=0.208  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204         51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ  129 (189)
Q Consensus        51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  129 (189)
                      ..+.+.+.....++.+|+|+|||+|.+++.+++.+. +|+|+|+++.+++.|++|+..+++...+.+..++.... ...+
T Consensus       147 ~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~  225 (288)
T TIGR00406       147 SLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGK  225 (288)
T ss_pred             HHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCC
Confidence            334444444455689999999999999999988765 79999999999999999999998865677777764333 3468


Q ss_pred             ccEEEECCCC
Q psy13204        130 GDVVFLSPPW  139 (189)
Q Consensus       130 ~D~v~~npp~  139 (189)
                      ||+|++|...
T Consensus       226 fDlVvan~~~  235 (288)
T TIGR00406       226 ADVIVANILA  235 (288)
T ss_pred             ceEEEEecCH
Confidence            9999999754

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.27  E-value=6.6e-12  Score=93.56  Aligned_cols=76  Identities=18%  Similarity=0.231  Sum_probs=64.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc-ccCC---CCCCccEEEEC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALA---PSLQGDVVFLS  136 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~---~~~~~D~v~~n  136 (189)
                      .+.+|||+|||+|..+..+++.  +.+++|+|+|+.+++.|++++...++ .++.++++|+ ....   +..+||+|+++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            3789999999999999999876  46899999999999999999988887 5899999999 4332   45689999997


Q ss_pred             CCC
Q psy13204        137 PPW  139 (189)
Q Consensus       137 pp~  139 (189)
                      .|.
T Consensus       119 ~~~  121 (202)
T PRK00121        119 FPD  121 (202)
T ss_pred             CCC
Confidence            654

>TIGR00740 methyltransferase, putative

Probab=99.27  E-value=1.9e-11  Score=93.41  Aligned_cols=96  Identities=15%  Similarity=0.094  Sum_probs=73.2

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEEC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  136 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~n  136 (189)
                      ..++.+|||+|||+|..+..+++.    +.+++|+|+++.|++.|++++...+...+++++++|+.+... ..+|+|+++
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~  129 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILN  129 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeee
Confidence            455789999999999999999874    578999999999999999998776654578999999988753 358999987


Q ss_pred             CCCCCCcccc---ccccccccCcC
Q psy13204        137 PPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       137 pp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      -..+......   ....+.+.+++
T Consensus       130 ~~l~~~~~~~~~~~l~~i~~~Lkp  153 (239)
T TIGR00740       130 FTLQFLPPEDRIALLTKIYEGLNP  153 (239)
T ss_pred             cchhhCCHHHHHHHHHHHHHhcCC
Confidence            7766543221   23345555543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.27  E-value=3.9e-11  Score=89.49  Aligned_cols=77  Identities=16%  Similarity=0.136  Sum_probs=64.1

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECC
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  137 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~np  137 (189)
                      .++++.+|||+|||+|..+..+++.  +.+++|+|+|+++++.|+++..      ++.+.++|+.+..+..+||+|+++-
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~~~~sfD~V~~~~  113 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPFKDNFFDLVLTKG  113 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCCCCCCEEEEEECC
Confidence            4555789999999999999999886  6899999999999999987642      5678889988744677999999987


Q ss_pred             CCCCC
Q psy13204        138 PWGGP  142 (189)
Q Consensus       138 p~~~~  142 (189)
                      ..++.
T Consensus       114 vL~hl  118 (204)
T TIGR03587       114 VLIHI  118 (204)
T ss_pred             hhhhC
Confidence            76654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.27  E-value=1.7e-11  Score=81.25  Aligned_cols=67  Identities=34%  Similarity=0.453  Sum_probs=57.6

Q ss_pred             EEEecCCCChHHHHHHHhC-----CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEE
Q psy13204         67 VIDGFCGCGGNTIQFAAVC-----QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL  135 (189)
Q Consensus        67 vlD~g~G~G~~~~~~~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~  135 (189)
                      |||+|||+|..+..+.+..     .+++|+|+|+++++.++++....+.  +++++++|+.++. ...+||+|++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEE
Confidence            7999999999999999874     7899999999999999999887766  8999999998876 4569999999

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.26  E-value=7.7e-11  Score=97.17  Aligned_cols=84  Identities=21%  Similarity=0.324  Sum_probs=69.3

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP  137 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~np  137 (189)
                      ++.+|||+|||+|+.+..+++.  ..+++++|+++++++.+++|++..|+...+.+..+|.....   +..+||.|++||
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa  317 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA  317 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence            4889999999999999999886  36899999999999999999999988433445777766543   346799999999


Q ss_pred             CCCCCcccc
Q psy13204        138 PWGGPEYAR  146 (189)
Q Consensus       138 p~~~~~~~~  146 (189)
                      ||.+.+...
T Consensus       318 PcSg~G~~~  326 (426)
T TIGR00563       318 PCSATGVIR  326 (426)
T ss_pred             CCCCCcccc
Confidence            999876543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.26  E-value=1.2e-10  Score=87.31  Aligned_cols=84  Identities=18%  Similarity=0.185  Sum_probs=69.3

Q ss_pred             HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204         53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P  126 (189)
Q Consensus        53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~  126 (189)
                      +...+.+.+  +++.+|||+|||+|..+..+++.   ..+|+++|+++++++.+++++...+. .+++++++|..... +
T Consensus        64 ~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~  142 (212)
T PRK13942         64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEE  142 (212)
T ss_pred             HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCc
Confidence            444444443  45899999999999999998876   26899999999999999999998887 58999999987654 4


Q ss_pred             CCCccEEEECC
Q psy13204        127 SLQGDVVFLSP  137 (189)
Q Consensus       127 ~~~~D~v~~np  137 (189)
                      ...||+|+++-
T Consensus       143 ~~~fD~I~~~~  153 (212)
T PRK13942        143 NAPYDRIYVTA  153 (212)
T ss_pred             CCCcCEEEECC
Confidence            56899999864

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.26  E-value=1.6e-10  Score=86.76  Aligned_cols=88  Identities=16%  Similarity=0.159  Sum_probs=72.0

Q ss_pred             HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCC
Q psy13204         53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQ  129 (189)
Q Consensus        53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~  129 (189)
                      +...+...+  .++.+|||+|||+|..+..+++.+.+++++|+++++++.|++++...++ .+++++++|..+.. ....
T Consensus        66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~  144 (212)
T PRK00312         66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKGWPAYAP  144 (212)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccCCCcCCC
Confidence            344444444  3478999999999999998888877999999999999999999998888 46999999987654 3368


Q ss_pred             ccEEEECCCCCC
Q psy13204        130 GDVVFLSPPWGG  141 (189)
Q Consensus       130 ~D~v~~npp~~~  141 (189)
                      ||+|+++.++..
T Consensus       145 fD~I~~~~~~~~  156 (212)
T PRK00312        145 FDRILVTAAAPE  156 (212)
T ss_pred             cCEEEEccCchh
Confidence            999999876654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.26  E-value=2.4e-10  Score=78.03  Aligned_cols=87  Identities=30%  Similarity=0.386  Sum_probs=68.6

Q ss_pred             HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--
Q psy13204         52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--  125 (189)
Q Consensus        52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--  125 (189)
                      .+...+...+.  .+.+|+|+|||+|.++..+++.  +.+++++|+++.+++.+++++...+. .+++++.+|.....  
T Consensus         6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~   84 (124)
T TIGR02469         6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALED   84 (124)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChh
Confidence            34444444443  3779999999999999999987  46899999999999999999988877 47899999876533  


Q ss_pred             CCCCccEEEECCCC
Q psy13204        126 PSLQGDVVFLSPPW  139 (189)
Q Consensus       126 ~~~~~D~v~~npp~  139 (189)
                      ...+||+|+++.+.
T Consensus        85 ~~~~~D~v~~~~~~   98 (124)
T TIGR02469        85 SLPEPDRVFIGGSG   98 (124)
T ss_pred             hcCCCCEEEECCcc
Confidence            23589999996543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK10742 putative methyltransferase; Provisional

Probab=99.25  E-value=5.7e-11  Score=89.78  Aligned_cols=85  Identities=20%  Similarity=0.318  Sum_probs=71.3

Q ss_pred             CCCC--EEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh------C--CCCceEEEeCCcccCCC--CCC
Q psy13204         62 KASD--VVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY------G--VSHKIQFIQGDFFALAP--SLQ  129 (189)
Q Consensus        62 ~~~~--~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~--~~~~~~~~~~d~~~~~~--~~~  129 (189)
                      +++.  +|||+++|+|..++.++..|++|+++|.++......++++...      +  +..+++++++|+.+++.  ...
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~  164 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR  164 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCC
Confidence            3455  8999999999999999999999999999999999999888764      2  22478999999998872  247


Q ss_pred             ccEEEECCCCCCCcccc
Q psy13204        130 GDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       130 ~D~v~~npp~~~~~~~~  146 (189)
                      ||+|++||||.......
T Consensus       165 fDVVYlDPMfp~~~ksa  181 (250)
T PRK10742        165 PQVVYLDPMFPHKQKSA  181 (250)
T ss_pred             CcEEEECCCCCCCcccc
Confidence            99999999999865443

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.25  E-value=5.3e-11  Score=86.44  Aligned_cols=79  Identities=25%  Similarity=0.256  Sum_probs=65.1

Q ss_pred             HHHHHhCCCCCEEEEecCCCChHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCc
Q psy13204         55 QHIASRCKASDVVIDGFCGCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQG  130 (189)
Q Consensus        55 ~~~~~~~~~~~~vlD~g~G~G~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~  130 (189)
                      +.+++.++++.+|||+|||.|.+...+.+ .+.+.+|+|++++.+..|.++        .+.++++|+.+-+   ++.+|
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~sF   76 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQSF   76 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCCc
Confidence            45677888899999999999999999977 488899999999998776544        5679999988765   77899


Q ss_pred             cEEEECCCCCC
Q psy13204        131 DVVFLSPPWGG  141 (189)
Q Consensus       131 D~v~~npp~~~  141 (189)
                      |.|+++-..+.
T Consensus        77 D~VIlsqtLQ~   87 (193)
T PF07021_consen   77 DYVILSQTLQA   87 (193)
T ss_pred             cEEehHhHHHh
Confidence            99999644443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.24  E-value=8.7e-11  Score=90.34  Aligned_cols=82  Identities=28%  Similarity=0.398  Sum_probs=63.7

Q ss_pred             HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204         51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ  129 (189)
Q Consensus        51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  129 (189)
                      ..+.+.+.....++.+|+|+|||+|.+++.+++.+.. |+|+|+|+.+++.|++|+..+++...+.+..+|.       +
T Consensus       107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~  179 (250)
T PRK00517        107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------K  179 (250)
T ss_pred             HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------C
Confidence            3445555555556899999999999999988887664 9999999999999999999888743444444332       7


Q ss_pred             ccEEEECCCC
Q psy13204        130 GDVVFLSPPW  139 (189)
Q Consensus       130 ~D~v~~npp~  139 (189)
                      ||+|++|...
T Consensus       180 fD~Vvani~~  189 (250)
T PRK00517        180 ADVIVANILA  189 (250)
T ss_pred             cCEEEEcCcH
Confidence            9999998643

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.24  E-value=3.7e-12  Score=82.84  Aligned_cols=71  Identities=30%  Similarity=0.294  Sum_probs=57.6

Q ss_pred             EEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCCC
Q psy13204         68 IDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        68 lD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~  142 (189)
                      ||+|||+|..+..+++. +.+++++|+++++++.++++....    ++.++++|..+.+ ++.+||+|+++--++..
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec
Confidence            79999999999999999 899999999999999999887644    4459999999887 77899999996555543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.23  E-value=1e-10  Score=90.15  Aligned_cols=87  Identities=24%  Similarity=0.290  Sum_probs=70.6

Q ss_pred             HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204         52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ  129 (189)
Q Consensus        52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  129 (189)
                      .+.+.+++.+.  ++..|+|+|||+|.++..+++.+.+++++|+++.+++.++.+...   ..+++++++|+.+... ..
T Consensus        16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~-~~   91 (253)
T TIGR00755        16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL-PD   91 (253)
T ss_pred             HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh-hH
Confidence            34555555443  378999999999999999999988999999999999999877643   2478999999988753 24


Q ss_pred             cc---EEEECCCCCCC
Q psy13204        130 GD---VVFLSPPWGGP  142 (189)
Q Consensus       130 ~D---~v~~npp~~~~  142 (189)
                      +|   +|++|+||+..
T Consensus        92 ~d~~~~vvsNlPy~i~  107 (253)
T TIGR00755        92 FPKQLKVVSNLPYNIS  107 (253)
T ss_pred             cCCcceEEEcCChhhH
Confidence            56   99999999863

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.23  E-value=1.8e-11  Score=91.77  Aligned_cols=96  Identities=17%  Similarity=0.184  Sum_probs=68.3

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh-----------CCCCceEEEeCCcccCCC--CC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY-----------GVSHKIQFIQGDFFALAP--SL  128 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~--~~  128 (189)
                      +++.+|||+|||.|..++++|++|.+|+|+|+|+.+++.+.......           .-..++++.++|+.+...  ..
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            45789999999999999999999999999999999999864322110           001368999999998763  34


Q ss_pred             CccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204        129 QGDVVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      .||.|+-.--+++.....   ....+.+++++
T Consensus       113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp  144 (213)
T TIGR03840       113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPP  144 (213)
T ss_pred             CcCEEEechhhccCCHHHHHHHHHHHHHHcCC
Confidence            688887655555443222   22346667754

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.23  E-value=4.3e-11  Score=93.12  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=74.7

Q ss_pred             hhhhhhhcCCcccCCCcccccChHHHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHh-----CCeEEEEeCCHHHHHHH
Q psy13204         28 EYFELTLADADNDATESWYSVTPEKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAV-----CQKVISIDIDPAKLRLA  101 (189)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~-----~~~v~~vD~~~~~~~~a  101 (189)
                      ++..+.+..+..+...++|+...+.+.+.+.+.+.. ..+|||+|||+|.++..+++.     +.+++|+|+|+.+++.|
T Consensus        49 ~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A  128 (272)
T PRK11088         49 GDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYA  128 (272)
T ss_pred             CcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHH
Confidence            344444443333334466776666666666665543 578999999999999998765     23789999999999998


Q ss_pred             HHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEEC
Q psy13204        102 QHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  136 (189)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n  136 (189)
                      .++.      .++.+.++|+.+.+ ++.+||+|++.
T Consensus       129 ~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~  158 (272)
T PRK11088        129 AKRY------PQVTFCVASSHRLPFADQSLDAIIRI  158 (272)
T ss_pred             HHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence            7653      36789999988765 56789999973

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.22  E-value=4.4e-11  Score=93.05  Aligned_cols=96  Identities=23%  Similarity=0.187  Sum_probs=74.1

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEEC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  136 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n  136 (189)
                      ++++.+|||+|||+|..++.+++. +  .+|+++|+++.+++.|+++....+. .+++++.+|+.+.. ++..||+|+++
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~  153 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISN  153 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEc
Confidence            455899999999999988877765 3  4799999999999999999988887 58899999988765 45689999998


Q ss_pred             CCCCCCcccc-ccccccccCcC
Q psy13204        137 PPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       137 pp~~~~~~~~-~~~~~~~~l~~  157 (189)
                      ..++...... ....+.++|++
T Consensus       154 ~v~~~~~d~~~~l~~~~r~Lkp  175 (272)
T PRK11873        154 CVINLSPDKERVFKEAFRVLKP  175 (272)
T ss_pred             CcccCCCCHHHHHHHHHHHcCC
Confidence            7776543222 23345555644

>KOG3191|consensus

Probab=99.22  E-value=1.4e-10  Score=82.83  Aligned_cols=81  Identities=21%  Similarity=0.345  Sum_probs=70.8

Q ss_pred             CCEEEEecCCCChHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ...++|+|||+|..+.++++. +  ....+.|+||++++..++.++.++.  .++.++.|...-...+++|+++.||||.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPYV  121 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPYV  121 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCcC
Confidence            677899999999999999887 3  3467899999999999999999987  7899999999888779999999999999


Q ss_pred             CCcccc
Q psy13204        141 GPEYAR  146 (189)
Q Consensus       141 ~~~~~~  146 (189)
                      ..+...
T Consensus       122 pt~~~~  127 (209)
T KOG3191|consen  122 PTSDEE  127 (209)
T ss_pred             cCCccc
Confidence            755443

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.22  E-value=5.2e-11  Score=88.20  Aligned_cols=77  Identities=23%  Similarity=0.303  Sum_probs=66.6

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEEC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLS  136 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~n  136 (189)
                      ....+||+|||+|.++..+++.  ..+++|+|+++.+++.|+.++...++ .+++++++|+.+..    +...+|.|++|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            3678999999999999999987  56899999999999999999998888 48999999997643    34589999999


Q ss_pred             CCCC
Q psy13204        137 PPWG  140 (189)
Q Consensus       137 pp~~  140 (189)
                      .|-.
T Consensus        95 ~pdp   98 (194)
T TIGR00091        95 FPDP   98 (194)
T ss_pred             CCCc
Confidence            7644

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.22  E-value=2.3e-11  Score=89.27  Aligned_cols=73  Identities=25%  Similarity=0.276  Sum_probs=66.7

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      ..+|+|+|||+|..+..++++  +++++|+|-|++|++.|++...      +++|..+|+.++.+....|++++|..+++
T Consensus        31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~p~~~~dllfaNAvlqW  104 (257)
T COG4106          31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWKPEQPTDLLFANAVLQW  104 (257)
T ss_pred             cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcCCCCccchhhhhhhhhh
Confidence            779999999999999999998  8899999999999999876653      88999999999988889999999999886


Q ss_pred             C
Q psy13204        142 P  142 (189)
Q Consensus       142 ~  142 (189)
                      .
T Consensus       105 l  105 (257)
T COG4106         105 L  105 (257)
T ss_pred             c
Confidence            4

>KOG1270|consensus

Probab=99.21  E-value=1e-11  Score=93.57  Aligned_cols=76  Identities=20%  Similarity=0.184  Sum_probs=59.2

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC-----CceEEEeCCcccCCCCCCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS-----HKIQFIQGDFFALAPSLQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~D~v~~npp  138 (189)
                      |..|||+|||.|.++..+++.|++|+|+|.++.+++.|++........     -++++.+.|..+.-  ..||+|++--.
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcsev  167 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSEV  167 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHHH
Confidence            477999999999999999999999999999999999999885443221     13566677766653  45999998444


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      +.+
T Consensus       168 leH  170 (282)
T KOG1270|consen  168 LEH  170 (282)
T ss_pred             HHH
Confidence            433

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.21  E-value=6e-11  Score=91.84  Aligned_cols=97  Identities=19%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  139 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~  139 (189)
                      +++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|+++...   ..++.+.++|+.+.. +..+||+|++...+
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l  127 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDAI  127 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhhH
Confidence            45889999999999999988765 77999999999999999987653   247899999988754 56789999996554


Q ss_pred             CCCcc---ccccccccccCcCCCCchh
Q psy13204        140 GGPEY---ARSSFSIDNIFPEQGGGRR  163 (189)
Q Consensus       140 ~~~~~---~~~~~~~~~~l~~~~~g~~  163 (189)
                      .+...   ......+.++|++  ||..
T Consensus       128 ~h~~~~d~~~~l~~i~r~LkP--GG~l  152 (263)
T PTZ00098        128 LHLSYADKKKLFEKCYKWLKP--NGIL  152 (263)
T ss_pred             HhCCHHHHHHHHHHHHHHcCC--CcEE
Confidence            44321   1133445666744  3553

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.21  E-value=1.4e-10  Score=88.21  Aligned_cols=85  Identities=20%  Similarity=0.196  Sum_probs=70.6

Q ss_pred             HHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----
Q psy13204         54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----  126 (189)
Q Consensus        54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----  126 (189)
                      ...++...+ +++|||+|||+|..++++++.   +.+++++|+++++++.|++|+..+++.++++++.+|+.+.++    
T Consensus        60 L~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~  138 (234)
T PLN02781         60 LSMLVKIMN-AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN  138 (234)
T ss_pred             HHHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh
Confidence            334444434 889999999999998888775   468999999999999999999999997789999999987641    


Q ss_pred             ---CCCccEEEECCCC
Q psy13204        127 ---SLQGDVVFLSPPW  139 (189)
Q Consensus       127 ---~~~~D~v~~npp~  139 (189)
                         ..+||+|++|.+.
T Consensus       139 ~~~~~~fD~VfiDa~k  154 (234)
T PLN02781        139 NDPKPEFDFAFVDADK  154 (234)
T ss_pred             CCCCCCCCEEEECCCH
Confidence               3589999999653

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.21  E-value=4.1e-11  Score=95.21  Aligned_cols=101  Identities=16%  Similarity=0.128  Sum_probs=72.5

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      +.+|||+|||+|.++..++..+. .|+|+|.++.++..++......+...++.++.+|+.+......||+|++.-..++.
T Consensus       123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H~  202 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHR  202 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhcc
Confidence            78999999999999999998865 59999999998876554433333224789999999887656789999985444433


Q ss_pred             c-cccccccccccCcCCCCchhHHH
Q psy13204        143 E-YARSSFSIDNIFPEQGGGRRLFQ  166 (189)
Q Consensus       143 ~-~~~~~~~~~~~l~~~~~g~~~~~  166 (189)
                      . .......+.+.|++  ||..+++
T Consensus       203 ~dp~~~L~~l~~~Lkp--GG~lvl~  225 (322)
T PRK15068        203 RSPLDHLKQLKDQLVP--GGELVLE  225 (322)
T ss_pred             CCHHHHHHHHHHhcCC--CcEEEEE
Confidence            2 22244456667754  4665554

>PRK05785 hypothetical protein; Provisional

Probab=99.20  E-value=9.9e-11  Score=88.67  Aligned_cols=80  Identities=24%  Similarity=0.255  Sum_probs=62.5

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCc
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG  130 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  130 (189)
                      +.+.+.....++.+|||+|||+|..+..+++. +.+|+|+|+|++|++.|+++         ..++++|+.+.+ ++.+|
T Consensus        41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sf  111 (226)
T PRK05785         41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSF  111 (226)
T ss_pred             HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCE
Confidence            34444444445789999999999999999888 68999999999999998753         135688888776 67789


Q ss_pred             cEEEECCCCCC
Q psy13204        131 DVVFLSPPWGG  141 (189)
Q Consensus       131 D~v~~npp~~~  141 (189)
                      |+|++.-..+.
T Consensus       112 D~v~~~~~l~~  122 (226)
T PRK05785        112 DVVMSSFALHA  122 (226)
T ss_pred             EEEEecChhhc
Confidence            99999655543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.19  E-value=1.3e-10  Score=97.19  Aligned_cols=99  Identities=23%  Similarity=0.257  Sum_probs=75.5

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  139 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~  139 (189)
                      +++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.|+++..  +...++++.++|+.+.. +..+||+|++.-.+
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l  342 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSRDTI  342 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence            44789999999999999999876 7899999999999999998875  33247899999998765 55689999997666


Q ss_pred             CCCcccc-ccccccccCcCCCCchhH
Q psy13204        140 GGPEYAR-SSFSIDNIFPEQGGGRRL  164 (189)
Q Consensus       140 ~~~~~~~-~~~~~~~~l~~~~~g~~~  164 (189)
                      .+..... ....+.+++++  ||..+
T Consensus       343 ~h~~d~~~~l~~~~r~Lkp--gG~l~  366 (475)
T PLN02336        343 LHIQDKPALFRSFFKWLKP--GGKVL  366 (475)
T ss_pred             cccCCHHHHHHHHHHHcCC--CeEEE
Confidence            6544333 33456666654  45533

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.18  E-value=2.7e-10  Score=91.81  Aligned_cols=77  Identities=18%  Similarity=0.209  Sum_probs=68.3

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---CCCCCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~npp  138 (189)
                      +..+||+|||+|.+++.+|+.  ...++|+|+++.+++.|..++...++ .++.++++|+...   .++.++|.|+++.|
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP  201 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHFP  201 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence            679999999999999999987  56899999999999999999999998 5899999998654   36778999999987


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      ..+
T Consensus       202 dPW  204 (390)
T PRK14121        202 VPW  204 (390)
T ss_pred             CCc
Confidence            654

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.18  E-value=4.8e-10  Score=83.11  Aligned_cols=89  Identities=21%  Similarity=0.294  Sum_probs=69.8

Q ss_pred             cChHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204         48 VTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  123 (189)
Q Consensus        48 ~~~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  123 (189)
                      .++..+...+...+.  ++.+|||+|||+|.+++.+++.  +.+|+++|+++++++.+++|+...++ .+++++++|+.+
T Consensus        23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~  101 (196)
T PRK07402         23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPE  101 (196)
T ss_pred             CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHH
Confidence            345566666666554  4789999999999999999865  57899999999999999999998888 579999999865


Q ss_pred             CCC--CCCccEEEECC
Q psy13204        124 LAP--SLQGDVVFLSP  137 (189)
Q Consensus       124 ~~~--~~~~D~v~~np  137 (189)
                      ...  ...+|.++++.
T Consensus       102 ~~~~~~~~~d~v~~~~  117 (196)
T PRK07402        102 CLAQLAPAPDRVCIEG  117 (196)
T ss_pred             HHhhCCCCCCEEEEEC
Confidence            321  12457777753

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.17  E-value=4.8e-11  Score=90.18  Aligned_cols=93  Identities=17%  Similarity=0.150  Sum_probs=72.4

Q ss_pred             CEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204         65 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      ++|||+|||+|.++..+++.  +.+++|+|+|+.+++.++++....++..+++++.+|..+.+...+||+|++.-.+++.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            37999999999999999886  4689999999999999999998888877899999998665434589999986555543


Q ss_pred             cccc-ccccccccCcC
Q psy13204        143 EYAR-SSFSIDNIFPE  157 (189)
Q Consensus       143 ~~~~-~~~~~~~~l~~  157 (189)
                      .... ....+.++|++
T Consensus        81 ~~~~~~l~~~~~~Lkp   96 (224)
T smart00828       81 KDKMDLFSNISRHLKD   96 (224)
T ss_pred             CCHHHHHHHHHHHcCC
Confidence            3222 23345566644

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=3.2e-10  Score=86.53  Aligned_cols=90  Identities=20%  Similarity=0.220  Sum_probs=74.3

Q ss_pred             HHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC--
Q psy13204         53 VAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL--  128 (189)
Q Consensus        53 ~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--  128 (189)
                      +.+.+++...  +++.|+|+|+|.|.++..+++.+.+|+++|+++.+++..++.....   ++++++++|+++..-..  
T Consensus        18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~l~   94 (259)
T COG0030          18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSLA   94 (259)
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchhhc
Confidence            4555555443  3789999999999999999999999999999999999988876522   58999999999987333  


Q ss_pred             CccEEEECCCCCCCccc
Q psy13204        129 QGDVVFLSPPWGGPEYA  145 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~  145 (189)
                      .++.|++|.||+..+..
T Consensus        95 ~~~~vVaNlPY~Isspi  111 (259)
T COG0030          95 QPYKVVANLPYNISSPI  111 (259)
T ss_pred             CCCEEEEcCCCcccHHH
Confidence            78999999999986543

>TIGR00452 methyltransferase, putative

Probab=99.16  E-value=1.1e-10  Score=92.25  Aligned_cols=101  Identities=12%  Similarity=0.049  Sum_probs=72.6

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      +++|+|+|||+|.++..++..+. .|+|+|.|+.++..++......+...++.+...++.+......||+|++.-...+.
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H~  201 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYHR  201 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhcc
Confidence            78999999999999999988875 69999999999877644333323224678888888877655689999997655544


Q ss_pred             ccc-cccccccccCcCCCCchhHHH
Q psy13204        143 EYA-RSSFSIDNIFPEQGGGRRLFQ  166 (189)
Q Consensus       143 ~~~-~~~~~~~~~l~~~~~g~~~~~  166 (189)
                      ... .....+.+.|++  ||..+++
T Consensus       202 ~dp~~~L~el~r~Lkp--GG~Lvle  224 (314)
T TIGR00452       202 KSPLEHLKQLKHQLVI--KGELVLE  224 (314)
T ss_pred             CCHHHHHHHHHHhcCC--CCEEEEE
Confidence            332 344566777755  4654443

Known examples to date are restricted to the proteobacteria.

>KOG0820|consensus

Probab=99.15  E-value=4.4e-10  Score=85.17  Aligned_cols=96  Identities=24%  Similarity=0.296  Sum_probs=78.6

Q ss_pred             ChHHHHHHHHH--hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC
Q psy13204         49 TPEKVAQHIAS--RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP  126 (189)
Q Consensus        49 ~~~~~~~~~~~--~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  126 (189)
                      ++. +...+.+  .+++++.||++|.|+|.++..+...|++|+++|+++.|+....++..-...+...+++.+|.++. +
T Consensus        43 Np~-v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~-d  120 (315)
T KOG0820|consen   43 NPL-VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT-D  120 (315)
T ss_pred             CHH-HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-C
Confidence            444 4444444  34558999999999999999999999999999999999999888876665556789999999887 3


Q ss_pred             CCCccEEEECCCCCCCcccc
Q psy13204        127 SLQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       127 ~~~~D~v~~npp~~~~~~~~  146 (189)
                      ...||.++.|.||+..+...
T Consensus       121 ~P~fd~cVsNlPyqISSp~v  140 (315)
T KOG0820|consen  121 LPRFDGCVSNLPYQISSPLV  140 (315)
T ss_pred             CcccceeeccCCccccCHHH
Confidence            46899999999999866443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.15  E-value=2.7e-10  Score=92.56  Aligned_cols=96  Identities=21%  Similarity=0.194  Sum_probs=74.2

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      +++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++..  ++  .+++...|..+.  ..+||+|++...++
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~~~fD~Ivs~~~~e  239 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--NGQFDRIVSVGMFE  239 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--CCCCCEEEEeCchh
Confidence            45889999999999999999876 7899999999999999998874  33  578888888765  36899999988777


Q ss_pred             CCcccc---ccccccccCcCCCCchhHH
Q psy13204        141 GPEYAR---SSFSIDNIFPEQGGGRRLF  165 (189)
Q Consensus       141 ~~~~~~---~~~~~~~~l~~~~~g~~~~  165 (189)
                      +.+...   ....+.++|++  ||..++
T Consensus       240 hvg~~~~~~~l~~i~r~Lkp--GG~lvl  265 (383)
T PRK11705        240 HVGPKNYRTYFEVVRRCLKP--DGLFLL  265 (383)
T ss_pred             hCChHHHHHHHHHHHHHcCC--CcEEEE
Confidence            654321   33456667755  465444

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=7.2e-10  Score=81.72  Aligned_cols=83  Identities=18%  Similarity=0.164  Sum_probs=70.9

Q ss_pred             HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCC
Q psy13204         53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQ  129 (189)
Q Consensus        53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~  129 (189)
                      +...+.+.+  +++.+|||+|||+|..+.-+++...+|+.+|..++..+.|++|+...|+ .++.++++|...-. +...
T Consensus        60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~gDG~~G~~~~aP  138 (209)
T COG2518          60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY-ENVTVRHGDGSKGWPEEAP  138 (209)
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC-CceEEEECCcccCCCCCCC
Confidence            334444443  4499999999999999999999988999999999999999999999999 47999999988766 4478


Q ss_pred             ccEEEEC
Q psy13204        130 GDVVFLS  136 (189)
Q Consensus       130 ~D~v~~n  136 (189)
                      ||.|+..
T Consensus       139 yD~I~Vt  145 (209)
T COG2518         139 YDRIIVT  145 (209)
T ss_pred             cCEEEEe
Confidence            9999884

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.14  E-value=5.1e-10  Score=88.46  Aligned_cols=74  Identities=26%  Similarity=0.153  Sum_probs=61.4

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEeCCcccCCCCCCccEEEECCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV----SHKIQFIQGDFFALAPSLQGDVVFLSPPW  139 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~D~v~~npp~  139 (189)
                      +.+|||+|||+|.+++.+++.|.+|+|+|+|+.|++.|+++....+.    ..++++.++|+.+.  ...||+|++.-.+
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~vL  222 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLDVL  222 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcCEE
Confidence            67999999999999999999999999999999999999999876421    13578888887654  4679999875443

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.13  E-value=6.5e-10  Score=84.22  Aligned_cols=77  Identities=26%  Similarity=0.279  Sum_probs=64.9

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      ++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++....+...++++..+|...  ....||+|++.-.+++
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~~  139 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLIH  139 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhhc
Confidence            4779999999999999999998889999999999999999998877765578999999432  3467999998655533

>PLN02476 O-methyltransferase

Probab=99.11  E-value=6.9e-10  Score=85.89  Aligned_cols=86  Identities=17%  Similarity=0.152  Sum_probs=72.7

Q ss_pred             HHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----
Q psy13204         54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----  126 (189)
Q Consensus        54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----  126 (189)
                      ...++...+ +++|||+|+|+|..+++++..   +.+++++|.+++..+.|+++++..|+.++++++.+|+.+.++    
T Consensus       110 L~~L~~~~~-ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~  188 (278)
T PLN02476        110 LAMLVQILG-AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQ  188 (278)
T ss_pred             HHHHHHhcC-CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh
Confidence            344444444 889999999999999999885   567999999999999999999999998789999999988652    


Q ss_pred             ---CCCccEEEECCCCC
Q psy13204        127 ---SLQGDVVFLSPPWG  140 (189)
Q Consensus       127 ---~~~~D~v~~npp~~  140 (189)
                         ..+||.||+|++..
T Consensus       189 ~~~~~~FD~VFIDa~K~  205 (278)
T PLN02476        189 NGEGSSYDFAFVDADKR  205 (278)
T ss_pred             cccCCCCCEEEECCCHH
Confidence               25799999998853

>PRK04266 fibrillarin; Provisional

Probab=99.10  E-value=1e-09  Score=83.00  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=59.6

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFL  135 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~  135 (189)
                      +++.+|+|+|||+|.++..+++..  .+|+|+|++++|++.+.++++..   .++.++.+|+.+..    ....||+|++
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i~~  147 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVIYQ  147 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEEEE
Confidence            358899999999999999999873  58999999999999887776543   47889999986521    1246999998


Q ss_pred             CCC
Q psy13204        136 SPP  138 (189)
Q Consensus       136 npp  138 (189)
                      |.+
T Consensus       148 d~~  150 (226)
T PRK04266        148 DVA  150 (226)
T ss_pred             CCC
Confidence            755

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.08  E-value=5.1e-10  Score=81.58  Aligned_cols=75  Identities=23%  Similarity=0.309  Sum_probs=57.3

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      -.+++|+|||.|.++..++.++.+++++|+++.+++.|+++....   .+++++++|+.+..+..+||+|++--....
T Consensus        44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY  118 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWPEGRFDLIVLSEVLYY  118 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred             cceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence            468999999999999999999999999999999999999887533   489999999998888899999998544433

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK06922 hypothetical protein; Provisional

Probab=99.08  E-value=1e-09  Score=93.10  Aligned_cols=77  Identities=18%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP  137 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~np  137 (189)
                      ++.+|||+|||+|..+..+++.  +.+++|+|+|+.|++.|+++....+.  ++.++++|+.+..   ++.+||+|++++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVsn~  495 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVYSS  495 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEEch
Confidence            3889999999999999888875  67999999999999999988765554  7888999987753   456899999998


Q ss_pred             CCCC
Q psy13204        138 PWGG  141 (189)
Q Consensus       138 p~~~  141 (189)
                      +++.
T Consensus       496 vLH~  499 (677)
T PRK06922        496 ILHE  499 (677)
T ss_pred             HHHh
Confidence            8874

>TIGR03438 probable methyltransferase

Probab=99.08  E-value=6.2e-10  Score=87.84  Aligned_cols=105  Identities=16%  Similarity=0.086  Sum_probs=72.8

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CC
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PS  127 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~  127 (189)
                      ..+.++..++++.+|||+|||+|..+..++++   +.+++++|+|++|++.+.+++.......++.++++|..+..  ..
T Consensus        53 ~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~  132 (301)
T TIGR03438        53 HADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP  132 (301)
T ss_pred             HHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc
Confidence            44455666666789999999999999999887   57899999999999999998765432126788999987643  11


Q ss_pred             C----CccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204        128 L----QGDVVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       128 ~----~~D~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      .    ...+++++-+++.....+   ....+.+.|++
T Consensus       133 ~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~p  169 (301)
T TIGR03438       133 EPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGP  169 (301)
T ss_pred             ccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCC
Confidence            1    234566666666544333   23445556644

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.08  E-value=8.7e-10  Score=82.07  Aligned_cols=86  Identities=23%  Similarity=0.312  Sum_probs=71.1

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----  125 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----  125 (189)
                      +...++...+ .++||++|+++|..++++++.   +++++.+|.+++..+.|++++...|+.++++++.+|+.+.+    
T Consensus        36 lL~~l~~~~~-~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~  114 (205)
T PF01596_consen   36 LLQMLVRLTR-PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA  114 (205)
T ss_dssp             HHHHHHHHHT--SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH
T ss_pred             HHHHHHHhcC-CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH
Confidence            3444444444 889999999999999999986   67999999999999999999999999778999999998764    


Q ss_pred             -C--CCCccEEEECCCC
Q psy13204        126 -P--SLQGDVVFLSPPW  139 (189)
Q Consensus       126 -~--~~~~D~v~~npp~  139 (189)
                       .  ..+||.||+|..-
T Consensus       115 ~~~~~~~fD~VFiDa~K  131 (205)
T PF01596_consen  115 NDGEEGQFDFVFIDADK  131 (205)
T ss_dssp             HTTTTTSEEEEEEESTG
T ss_pred             hccCCCceeEEEEcccc
Confidence             1  2479999998754

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.08  E-value=2.5e-09  Score=84.82  Aligned_cols=83  Identities=19%  Similarity=0.236  Sum_probs=67.3

Q ss_pred             HHHHHHHh--CCCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204         53 VAQHIASR--CKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P  126 (189)
Q Consensus        53 ~~~~~~~~--~~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~  126 (189)
                      +...+.+.  ++++.+|||+|||+|.++..+++..   .+|+++|+++++++.|++++...+. .++.++++|..+.. .
T Consensus        68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~  146 (322)
T PRK13943         68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPE  146 (322)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccc
Confidence            34444443  3457899999999999999998863   3699999999999999999998888 57999999987654 3


Q ss_pred             CCCccEEEEC
Q psy13204        127 SLQGDVVFLS  136 (189)
Q Consensus       127 ~~~~D~v~~n  136 (189)
                      ...||+|+++
T Consensus       147 ~~~fD~Ii~~  156 (322)
T PRK13943        147 FAPYDVIFVT  156 (322)
T ss_pred             cCCccEEEEC
Confidence            3579999996

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=99.07  E-value=7.7e-10  Score=93.58  Aligned_cols=94  Identities=21%  Similarity=0.300  Sum_probs=70.1

Q ss_pred             ChHHHHHHHHHhCC---------CCCEEEEecCCCChHHHHHHHhC----------CeEEEEeCCHHHHHHHHHHHHHhC
Q psy13204         49 TPEKVAQHIASRCK---------ASDVVIDGFCGCGGNTIQFAAVC----------QKVISIDIDPAKLRLAQHNASVYG  109 (189)
Q Consensus        49 ~~~~~~~~~~~~~~---------~~~~vlD~g~G~G~~~~~~~~~~----------~~v~~vD~~~~~~~~a~~~~~~~~  109 (189)
                      ||..+++.|++.+.         ...+|+|+|||+|.+.+.++...          ..++|+|+++.++..++.++...+
T Consensus         8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~   87 (524)
T TIGR02987         8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA   87 (524)
T ss_pred             CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence            56667777776542         23589999999999999997642          368999999999999999987665


Q ss_pred             CCCceEEEeCCcccCC------CCCCccEEEECCCCCCCc
Q psy13204        110 VSHKIQFIQGDFFALA------PSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       110 ~~~~~~~~~~d~~~~~------~~~~~D~v~~npp~~~~~  143 (189)
                      . ..+.+.+.|.....      ....||+|++||||....
T Consensus        88 ~-~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k  126 (524)
T TIGR02987        88 L-LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLK  126 (524)
T ss_pred             C-CCceeeecccccccccccccccCcccEEEeCCCccccC
Confidence            2 24566666654321      124799999999999754

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.07  E-value=9.2e-10  Score=83.62  Aligned_cols=78  Identities=28%  Similarity=0.423  Sum_probs=65.1

Q ss_pred             CCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  138 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp  138 (189)
                      ++.+|+|+|||+|.++..+++.+   .+++++|+++.+++.++++....+...+++++.+|+.+.. +...||+|+++--
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            36799999999999999998875   7899999999999999999876655457899999998765 4467999998544


Q ss_pred             CC
Q psy13204        139 WG  140 (189)
Q Consensus       139 ~~  140 (189)
                      .+
T Consensus       131 l~  132 (239)
T PRK00216        131 LR  132 (239)
T ss_pred             cc
Confidence            43

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.06  E-value=1.7e-09  Score=81.41  Aligned_cols=96  Identities=17%  Similarity=0.226  Sum_probs=66.3

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh-----------CCCCceEEEeCCcccCCCC--C
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY-----------GVSHKIQFIQGDFFALAPS--L  128 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~--~  128 (189)
                      +++.+|||+|||.|..+++++++|.+|+|+|+|+.+++.+.......           -...++++.++|+.+..+.  .
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~  115 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA  115 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence            44789999999999999999999999999999999999864321110           0124689999999988532  4


Q ss_pred             CccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204        129 QGDVVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      .||.|+--.-++......   ....+.+++++
T Consensus       116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p  147 (218)
T PRK13255        116 DVDAVYDRAALIALPEEMRERYVQQLAALLPA  147 (218)
T ss_pred             CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC
Confidence            688887433333332221   22345666654

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=99.06  E-value=6.4e-09  Score=87.05  Aligned_cols=138  Identities=22%  Similarity=0.333  Sum_probs=97.7

Q ss_pred             cChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh-C-----CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC
Q psy13204         48 VTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV-C-----QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG  119 (189)
Q Consensus        48 ~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~-~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (189)
                      .||..+.++++..+.+  ..+|+|+.||+|++...+.+. +     ...+|.|+++..+..|+.|+-.+|+...+....+
T Consensus       169 yTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~  248 (489)
T COG0286         169 YTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG  248 (489)
T ss_pred             CChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence            3777889999998874  679999999999999888765 1     4579999999999999999999998434677888


Q ss_pred             CcccCC-C-----CCCccEEEECCCCCCCcccccc----c----cccccCcCCCCc-hhHHHHh-hhcCC--ceEEEcCC
Q psy13204        120 DFFALA-P-----SLQGDVVFLSPPWGGPEYARSS----F----SIDNIFPEQGGG-RRLFQVA-RGISP--NVGYYLPR  181 (189)
Q Consensus       120 d~~~~~-~-----~~~~D~v~~npp~~~~~~~~~~----~----~~~~~l~~~~~g-~~~~~~~-~~~~~--~~~~~lp~  181 (189)
                      |....+ .     ...||.|++||||...++....    .    ......+...+. +.++++. ....|  ...+++|.
T Consensus       249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~  328 (489)
T COG0286         249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD  328 (489)
T ss_pred             ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence            776655 1     1469999999999855544411    0    111122222234 5444444 45554  57888888


Q ss_pred             CCCc
Q psy13204        182 TSDV  185 (189)
Q Consensus       182 ~~~~  185 (189)
                      +.-+
T Consensus       329 gvlf  332 (489)
T COG0286         329 GVLF  332 (489)
T ss_pred             CcCc
Confidence            7654

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.05  E-value=7.1e-10  Score=88.35  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhC---CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204         51 EKVAQHIASRC---KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA  125 (189)
Q Consensus        51 ~~~~~~~~~~~---~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  125 (189)
                      +.+...+.+..   .++.+|||+|||+|.++..+++.  +.+++++|+++++++.|+++...    .+++++.+|+.+..
T Consensus        98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp  173 (340)
T PLN02490         98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLP  173 (340)
T ss_pred             HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCC
Confidence            33444444433   23679999999999999988775  56899999999999999987642    36788999998765


Q ss_pred             -CCCCccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204        126 -PSLQGDVVFLSPPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       126 -~~~~~D~v~~npp~~~~~~~~-~~~~~~~~l~~  157 (189)
                       +...||+|+++...+...... ....+.+.|++
T Consensus       174 ~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkP  207 (340)
T PLN02490        174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKI  207 (340)
T ss_pred             CCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCC
Confidence             556899999987776533222 23345566644

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.05  E-value=1.2e-09  Score=80.94  Aligned_cols=82  Identities=22%  Similarity=0.181  Sum_probs=63.7

Q ss_pred             HHHHhCCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---CCCCCcc
Q psy13204         56 HIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGD  131 (189)
Q Consensus        56 ~~~~~~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D  131 (189)
                      .+.+.++++.+|+|+|||+|.++..+++. +..++|+|+++++++.++.+        +++++++|+.+.   .+..+||
T Consensus         6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD   77 (194)
T TIGR02081         6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFD   77 (194)
T ss_pred             HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcC
Confidence            34455667889999999999999988765 56789999999999887532        457788887652   2456899


Q ss_pred             EEEECCCCCCCccc
Q psy13204        132 VVFLSPPWGGPEYA  145 (189)
Q Consensus       132 ~v~~npp~~~~~~~  145 (189)
                      +|+++.++++....
T Consensus        78 ~Vi~~~~l~~~~d~   91 (194)
T TIGR02081        78 YVILSQTLQATRNP   91 (194)
T ss_pred             EEEEhhHhHcCcCH
Confidence            99999988876443

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.05  E-value=4.4e-10  Score=93.98  Aligned_cols=91  Identities=14%  Similarity=0.083  Sum_probs=69.7

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC--C-CCCCccEEEECCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL--A-PSLQGDVVFLSPPWG  140 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~-~~~~~D~v~~npp~~  140 (189)
                      +.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++..   .+...+++++++|+.+.  . +..+||+|+++.+++
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~  114 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM  114 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence            67999999999999999999988999999999999876542   22224789999998642  2 556899999999988


Q ss_pred             CCcccc---ccccccccCcC
Q psy13204        141 GPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       141 ~~~~~~---~~~~~~~~l~~  157 (189)
                      ......   ....+.+++++
T Consensus       115 ~l~~~~~~~~l~~~~r~Lk~  134 (475)
T PLN02336        115 YLSDKEVENLAERMVKWLKV  134 (475)
T ss_pred             hCCHHHHHHHHHHHHHhcCC
Confidence            765422   23345556644

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=2.1e-09  Score=81.13  Aligned_cols=81  Identities=22%  Similarity=0.234  Sum_probs=71.8

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  137 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~np  137 (189)
                      +.+|.+|+|.|.|+|.++.++++.   -++|+.+|+.++..+.|++|+...++.+++++..+|+.+......||+|+.|.
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDm  171 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDL  171 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcC
Confidence            455999999999999999999986   36899999999999999999999999666999999999887556999999998


Q ss_pred             CCCC
Q psy13204        138 PWGG  141 (189)
Q Consensus       138 p~~~  141 (189)
                      |--+
T Consensus       172 p~PW  175 (256)
T COG2519         172 PDPW  175 (256)
T ss_pred             CChH
Confidence            7654

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.03  E-value=3.7e-09  Score=78.94  Aligned_cols=86  Identities=19%  Similarity=0.232  Sum_probs=66.4

Q ss_pred             HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204         53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P  126 (189)
Q Consensus        53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~  126 (189)
                      +...+.+.+  +++.+|||+|||+|..+..++.. +  ..|+++|.++...+.|++++...+. .++.++++|...-. .
T Consensus        60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~  138 (209)
T PF01135_consen   60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPE  138 (209)
T ss_dssp             HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGG
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhcccc
Confidence            344444443  55999999999999999999987 3  3689999999999999999999998 58999999987755 4


Q ss_pred             CCCccEEEECCCC
Q psy13204        127 SLQGDVVFLSPPW  139 (189)
Q Consensus       127 ~~~~D~v~~npp~  139 (189)
                      ...||.|+++...
T Consensus       139 ~apfD~I~v~~a~  151 (209)
T PF01135_consen  139 EAPFDRIIVTAAV  151 (209)
T ss_dssp             G-SEEEEEESSBB
T ss_pred             CCCcCEEEEeecc
Confidence            4579999996544

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PLN03075 nicotianamine synthase; Provisional

Probab=99.02  E-value=1.2e-09  Score=85.15  Aligned_cols=101  Identities=20%  Similarity=0.160  Sum_probs=71.6

Q ss_pred             CCCEEEEecCCCChHHHH-HH-Hh--CCeEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEeCCcccCC-CCCCccEEEEC
Q psy13204         63 ASDVVIDGFCGCGGNTIQ-FA-AV--CQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALA-PSLQGDVVFLS  136 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~-~~-~~--~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n  136 (189)
                      .+++|+|+|||.|.++.. ++ +.  +.+++|+|+++++++.|++++.. .++.++++|..+|+.+.. ....||+|+++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            478999999998855333 33 33  56799999999999999999964 788778999999998865 34689999998


Q ss_pred             CCCCCCcccc---ccccccccCcCCCCchhHHH
Q psy13204        137 PPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQ  166 (189)
Q Consensus       137 pp~~~~~~~~---~~~~~~~~l~~~~~g~~~~~  166 (189)
                       -.+..+...   ....+.+.+++  ||..++.
T Consensus       203 -ALi~~dk~~k~~vL~~l~~~LkP--GG~Lvlr  232 (296)
T PLN03075        203 -ALVGMDKEEKVKVIEHLGKHMAP--GALLMLR  232 (296)
T ss_pred             -cccccccccHHHHHHHHHHhcCC--CcEEEEe
Confidence             444332122   23345555544  3554443

>KOG1271|consensus

Probab=99.02  E-value=2e-09  Score=77.18  Aligned_cols=93  Identities=28%  Similarity=0.297  Sum_probs=71.4

Q ss_pred             CCcccccCh-HHHHHHHHHhCC-----C-CCEEEEecCCCChHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy13204         42 TESWYSVTP-EKVAQHIASRCK-----A-SDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSH  112 (189)
Q Consensus        42 ~~~~~~~~~-~~~~~~~~~~~~-----~-~~~vlD~g~G~G~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~  112 (189)
                      -+-||.... +.+..++...+.     + ..+|||+|||.|.+...+++.+.  ..+|+|.|+++++.|+..++..+.++
T Consensus        39 GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n  118 (227)
T KOG1271|consen   39 GEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSN  118 (227)
T ss_pred             cceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCc
Confidence            345666544 345566655443     2 44999999999999999999865  37999999999999999999999976


Q ss_pred             ceEEEeCCcccCC-CCCCccEEE
Q psy13204        113 KIQFIQGDFFALA-PSLQGDVVF  134 (189)
Q Consensus       113 ~~~~~~~d~~~~~-~~~~~D~v~  134 (189)
                      .|++.+.|+.+.. ...+||+|+
T Consensus       119 ~I~f~q~DI~~~~~~~~qfdlvl  141 (227)
T KOG1271|consen  119 EIRFQQLDITDPDFLSGQFDLVL  141 (227)
T ss_pred             ceeEEEeeccCCcccccceeEEe
Confidence            6999999998843 344566654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.02  E-value=7.6e-10  Score=84.02  Aligned_cols=89  Identities=21%  Similarity=0.214  Sum_probs=68.3

Q ss_pred             CCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  140 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~  140 (189)
                      +.+|||+|||+|.++..+++.+  .+++++|+++.+++.++.+..     .++.++.+|+.+.. +..+||+|+++-.++
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~  109 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ  109 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence            5689999999999999998875  467999999999999887654     36788999988776 567899999988777


Q ss_pred             CCcccc-ccccccccCcC
Q psy13204        141 GPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       141 ~~~~~~-~~~~~~~~l~~  157 (189)
                      ...... ....+.+++++
T Consensus       110 ~~~~~~~~l~~~~~~L~~  127 (240)
T TIGR02072       110 WCDDLSQALSELARVLKP  127 (240)
T ss_pred             hccCHHHHHHHHHHHcCC
Confidence            653332 22344555543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK08317 hypothetical protein; Provisional

Probab=99.01  E-value=1.8e-09  Score=81.94  Aligned_cols=94  Identities=26%  Similarity=0.297  Sum_probs=69.6

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  137 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~np  137 (189)
                      .++.+|||+|||+|.++..+++.   ..+++|+|+++.+++.++++....  ..++++..+|+.+.. +...||+|+++-
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~v~~~~   95 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPFPDGSFDAVRSDR   95 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCCCCCCceEEEEec
Confidence            44789999999999999999876   368999999999999998883322  247899999987654 556899999987


Q ss_pred             CCCCCcccc-ccccccccCcC
Q psy13204        138 PWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       138 p~~~~~~~~-~~~~~~~~l~~  157 (189)
                      .++...... ....+.+++++
T Consensus        96 ~~~~~~~~~~~l~~~~~~L~~  116 (241)
T PRK08317         96 VLQHLEDPARALAEIARVLRP  116 (241)
T ss_pred             hhhccCCHHHHHHHHHHHhcC
Confidence            766543222 22344555543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.00  E-value=1.1e-09  Score=84.73  Aligned_cols=116  Identities=16%  Similarity=0.078  Sum_probs=77.9

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE-CCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL-SPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~-npp~~~  141 (189)
                      |++|+|+|||+|.++..|+.+|++ |+|+|.++..+-+.+.-....|....+..+..-+.+......||+|++ .-=||.
T Consensus       116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLYHr  195 (315)
T PF08003_consen  116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLYHR  195 (315)
T ss_pred             CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehhcc
Confidence            999999999999999999999775 899999988776654433444432233333334444445568999887 555777


Q ss_pred             CccccccccccccCcCCCCchhHHHHhhhcCCceEEEcCC
Q psy13204        142 PEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPR  181 (189)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~lp~  181 (189)
                      .+....+..+.+.+..  ||..+++..--..++.....|.
T Consensus       196 r~Pl~~L~~Lk~~L~~--gGeLvLETlvi~g~~~~~L~P~  233 (315)
T PF08003_consen  196 RSPLDHLKQLKDSLRP--GGELVLETLVIDGDENTVLVPE  233 (315)
T ss_pred             CCHHHHHHHHHHhhCC--CCEEEEEEeeecCCCceEEccC
Confidence            6666666677777754  5776666654444444444443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1540|consensus

Probab=99.00  E-value=4.5e-09  Score=79.14  Aligned_cols=100  Identities=17%  Similarity=0.203  Sum_probs=76.8

Q ss_pred             HHHHhCCC--CCEEEEecCCCChHHHHHHHh--------CCeEEEEeCCHHHHHHHHHHHHHhCCCCc--eEEEeCCccc
Q psy13204         56 HIASRCKA--SDVVIDGFCGCGGNTIQFAAV--------CQKVISIDIDPAKLRLAQHNASVYGVSHK--IQFIQGDFFA  123 (189)
Q Consensus        56 ~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~--~~~~~~d~~~  123 (189)
                      .....+.+  +..+||++||+|..++.+.+.        ..+|+..|+||+|+..+++++...++..+  +.|+++|+++
T Consensus        91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~  170 (296)
T KOG1540|consen   91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED  170 (296)
T ss_pred             HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence            33444444  789999999999999999876        26899999999999999999977777544  8999999999


Q ss_pred             CC-CCCCccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204        124 LA-PSLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       124 ~~-~~~~~D~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      .+ +++++|...+  -|+.....+   -..+.-++|++
T Consensus       171 LpFdd~s~D~yTi--afGIRN~th~~k~l~EAYRVLKp  206 (296)
T KOG1540|consen  171 LPFDDDSFDAYTI--AFGIRNVTHIQKALREAYRVLKP  206 (296)
T ss_pred             CCCCCCcceeEEE--ecceecCCCHHHHHHHHHHhcCC
Confidence            98 8889999888  565555444   22234445544

>PRK06202 hypothetical protein; Provisional

Probab=98.99  E-value=2.2e-09  Score=81.62  Aligned_cols=78  Identities=26%  Similarity=0.207  Sum_probs=59.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHh----C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV----C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL  135 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~----~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~  135 (189)
                      .+.+|+|+|||+|.++..+++.    +  .+++|+|+++++++.|+++....+    +.+.+.+..... ++.+||+|++
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V~~  135 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEGERFDVVTS  135 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccCCCccEEEE
Confidence            4779999999999999888753    3  489999999999999988765333    445555443332 4568999999


Q ss_pred             CCCCCCCcc
Q psy13204        136 SPPWGGPEY  144 (189)
Q Consensus       136 npp~~~~~~  144 (189)
                      +-.+++...
T Consensus       136 ~~~lhh~~d  144 (232)
T PRK06202        136 NHFLHHLDD  144 (232)
T ss_pred             CCeeecCCh
Confidence            988877654

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.99  E-value=1.6e-09  Score=82.35  Aligned_cols=77  Identities=27%  Similarity=0.209  Sum_probs=65.7

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~  141 (189)
                      +..|||+|||+|.++..+++.+.+++++|+++.+++.++++....+.  .+++...|..+..  ....||+|++.-.+..
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~  126 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEMLEH  126 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence            77999999999999999998889999999999999999998877665  6788888887764  4468999999766655


Q ss_pred             C
Q psy13204        142 P  142 (189)
Q Consensus       142 ~  142 (189)
                      .
T Consensus       127 ~  127 (233)
T PRK05134        127 V  127 (233)
T ss_pred             c
Confidence            4

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.99  E-value=4.6e-09  Score=84.87  Aligned_cols=74  Identities=20%  Similarity=0.309  Sum_probs=65.3

Q ss_pred             CEEEEecCCCChHHHHHHHh--C-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--CCCccEEEECCCC
Q psy13204         65 DVVIDGFCGCGGNTIQFAAV--C-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPW  139 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~--~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~npp~  139 (189)
                      .+|||++||+|..++.++..  | .+|+++|+|+.+++.+++|++.+++ .++.++++|+...+.  ...||+|++|| |
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYRNRKFHVIDIDP-F  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence            48999999999999999986  3 5799999999999999999999988 478999999988763  35799999999 5


Q ss_pred             C
Q psy13204        140 G  140 (189)
Q Consensus       140 ~  140 (189)
                      +
T Consensus       124 G  124 (374)
T TIGR00308       124 G  124 (374)
T ss_pred             C
Confidence            4

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.99  E-value=2.6e-11  Score=79.99  Aligned_cols=89  Identities=20%  Similarity=0.210  Sum_probs=52.9

Q ss_pred             EEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC---CcccCCCCCCccEEEECCCCCCC
Q psy13204         68 IDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG---DFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        68 lD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      ||+|||+|.++..+.+.  ..+++|+|+|+.+++.++++....+. ........   +..+.....+||+|++.-.+++.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            69999999999999888  78899999999999988888877664 23333443   33333333599999998777776


Q ss_pred             cccc-ccccccccCcC
Q psy13204        143 EYAR-SSFSIDNIFPE  157 (189)
Q Consensus       143 ~~~~-~~~~~~~~l~~  157 (189)
                      .... ....+.+++++
T Consensus        80 ~~~~~~l~~~~~~L~p   95 (99)
T PF08242_consen   80 EDIEAVLRNIYRLLKP   95 (99)
T ss_dssp             S-HHHHHHHHTTT-TS
T ss_pred             hhHHHHHHHHHHHcCC
Confidence            3222 22234455533

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.98  E-value=1.4e-09  Score=82.05  Aligned_cols=93  Identities=19%  Similarity=0.109  Sum_probs=71.4

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--CCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~npp~~~  141 (189)
                      +.+|+|+|||+|.++..+++.+.+++++|+++.+++.++.++...+. .++++.++|+.+...  ...||+|+++-.++.
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~  124 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH  124 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence            77999999999999999988888999999999999999999887765 268889999887652  268999999766554


Q ss_pred             Ccccc-ccccccccCcC
Q psy13204        142 PEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       142 ~~~~~-~~~~~~~~l~~  157 (189)
                      ..... ....+.+.+..
T Consensus       125 ~~~~~~~l~~~~~~L~~  141 (224)
T TIGR01983       125 VPDPQAFIRACAQLLKP  141 (224)
T ss_pred             CCCHHHHHHHHHHhcCC
Confidence            33222 22334445533

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG2671|consensus

Probab=98.98  E-value=6.5e-10  Score=86.75  Aligned_cols=87  Identities=32%  Similarity=0.439  Sum_probs=71.2

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHH-------HHHHHHHHhCCCC-ceEEEeCCcccCC--CCCC
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR-------LAQHNASVYGVSH-KIQFIQGDFFALA--PSLQ  129 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~-------~a~~~~~~~~~~~-~~~~~~~d~~~~~--~~~~  129 (189)
                      ..++|+.|+|++.|+|++.+.++.-|+.|+|-||+-.++.       -.+.|++..|..+ -..++.+|.....  ....
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~  284 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK  284 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence            3456999999999999999999999999999999988876       2467888888643 3678888887765  4558


Q ss_pred             ccEEEECCCCCCCcccc
Q psy13204        130 GDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       130 ~D~v~~npp~~~~~~~~  146 (189)
                      ||+|++||||+.....+
T Consensus       285 fDaIvcDPPYGVRe~~r  301 (421)
T KOG2671|consen  285 FDAIVCDPPYGVREGAR  301 (421)
T ss_pred             eeEEEeCCCcchhhhhh
Confidence            99999999999765443

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.97  E-value=8.7e-09  Score=78.62  Aligned_cols=81  Identities=19%  Similarity=0.187  Sum_probs=65.2

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEE
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVV  133 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v  133 (189)
                      +.+|.+|+|.|.|+|.++..+++.   .++|+.+|..++..+.|++|++.+|+.+++++.+.|+.+..    ....+|.|
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav  117 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV  117 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence            466999999999999999999987   46999999999999999999999999778999999986422    13579999


Q ss_pred             EECCCCCC
Q psy13204        134 FLSPPWGG  141 (189)
Q Consensus       134 ~~npp~~~  141 (189)
                      ++|.|--+
T Consensus       118 fLDlp~Pw  125 (247)
T PF08704_consen  118 FLDLPDPW  125 (247)
T ss_dssp             EEESSSGG
T ss_pred             EEeCCCHH
Confidence            99988654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.97  E-value=4.2e-10  Score=80.29  Aligned_cols=91  Identities=18%  Similarity=0.154  Sum_probs=61.5

Q ss_pred             HHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC-CCCCCccE
Q psy13204         54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-APSLQGDV  132 (189)
Q Consensus        54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~  132 (189)
                      ...+......+.+|||+|||.|.++..+++.+.+++|+|+++.+++.         .  .......+.... .+...||+
T Consensus        13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~fD~   81 (161)
T PF13489_consen   13 LERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK---------R--NVVFDNFDAQDPPFPDGSFDL   81 (161)
T ss_dssp             HHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH---------T--TSEEEEEECHTHHCHSSSEEE
T ss_pred             HHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh---------h--hhhhhhhhhhhhhccccchhh
Confidence            33333334558999999999999999999889999999999999988         1  223333322222 25679999


Q ss_pred             EEECCCCCCCcccc-ccccccccC
Q psy13204        133 VFLSPPWGGPEYAR-SSFSIDNIF  155 (189)
Q Consensus       133 v~~npp~~~~~~~~-~~~~~~~~l  155 (189)
                      |+++-.+++..... ....+.+++
T Consensus        82 i~~~~~l~~~~d~~~~l~~l~~~L  105 (161)
T PF13489_consen   82 IICNDVLEHLPDPEEFLKELSRLL  105 (161)
T ss_dssp             EEEESSGGGSSHHHHHHHHHHHCE
T ss_pred             HhhHHHHhhcccHHHHHHHHHHhc
Confidence            99976666544322 223344444

...

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.97  E-value=6.6e-09  Score=85.82  Aligned_cols=83  Identities=19%  Similarity=0.293  Sum_probs=65.5

Q ss_pred             HHHHHHHhCCC------CCEEEEecCCCChHHHHHHHhC------CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCC
Q psy13204         53 VAQHIASRCKA------SDVVIDGFCGCGGNTIQFAAVC------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD  120 (189)
Q Consensus        53 ~~~~~~~~~~~------~~~vlD~g~G~G~~~~~~~~~~------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d  120 (189)
                      +.+.+.+....      +..|+|+|||+|.++..+++++      .+|++||.|+.++..+++.+..++..+.|+++++|
T Consensus       170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d  249 (448)
T PF05185_consen  170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGD  249 (448)
T ss_dssp             HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-
T ss_pred             HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCc
Confidence            44445554443      4689999999999998887775      58999999999998888887888887789999999


Q ss_pred             cccCCCCCCccEEEE
Q psy13204        121 FFALAPSLQGDVVFL  135 (189)
Q Consensus       121 ~~~~~~~~~~D~v~~  135 (189)
                      +.++....++|+||+
T Consensus       250 ~r~v~lpekvDIIVS  264 (448)
T PF05185_consen  250 MREVELPEKVDIIVS  264 (448)
T ss_dssp             TTTSCHSS-EEEEEE
T ss_pred             ccCCCCCCceeEEEE
Confidence            999986679999999

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.96  E-value=3.5e-10  Score=83.95  Aligned_cols=96  Identities=23%  Similarity=0.243  Sum_probs=74.1

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCcccCC---CCCCccEEEEC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA---PSLQGDVVFLS  136 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~---~~~~~D~v~~n  136 (189)
                      +.|.+|||.|.|-|..++++.++|+ +|+.+|.+|..++.|.-|-=-.++. ..+.++.+|+.+..   ++.+||+|+-|
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD  212 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD  212 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence            3499999999999999999999999 8999999999999988774222332 25799999998865   66789999999


Q ss_pred             CCCCCCcccc----ccccccccCcC
Q psy13204        137 PPWGGPEYAR----SSFSIDNIFPE  157 (189)
Q Consensus       137 pp~~~~~~~~----~~~~~~~~l~~  157 (189)
                      ||..-....-    ...++.++|+.
T Consensus       213 PPRfS~AgeLYseefY~El~RiLkr  237 (287)
T COG2521         213 PPRFSLAGELYSEEFYRELYRILKR  237 (287)
T ss_pred             CCccchhhhHhHHHHHHHHHHHcCc
Confidence            9987543321    22345556644

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.95  E-value=1.2e-08  Score=84.71  Aligned_cols=84  Identities=21%  Similarity=0.282  Sum_probs=72.7

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEEC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLS  136 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~n  136 (189)
                      +++.+|||+|||.|+-+..++..   ...++++|+++..++.+++|+.+.|+ .++.+.+.|..++.  ....||.|+.|
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~ILvD  190 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAILLD  190 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEEEc
Confidence            45899999999999999999876   35799999999999999999999999 57899999987653  23479999999


Q ss_pred             CCCCCCcccc
Q psy13204        137 PPWGGPEYAR  146 (189)
Q Consensus       137 pp~~~~~~~~  146 (189)
                      +||.+.+...
T Consensus       191 aPCSG~G~~r  200 (470)
T PRK11933        191 APCSGEGTVR  200 (470)
T ss_pred             CCCCCCcccc
Confidence            9999877655

>PRK00811 spermidine synthase; Provisional

Probab=98.95  E-value=7.1e-09  Score=81.12  Aligned_cols=76  Identities=14%  Similarity=0.203  Sum_probs=63.4

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC--C--CCceEEEeCCcccCC--CCCCccEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V--SHKIQFIQGDFFALA--PSLQGDVV  133 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~--~~~~~~~~~d~~~~~--~~~~~D~v  133 (189)
                      +.+++||++|||.|..+.++.+.  ..+|+++|+++.+++.|++.+...+  .  ..+++++.+|+.++.  ...+||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            44789999999999999999886  4589999999999999999876432  1  247899999998876  34689999


Q ss_pred             EECC
Q psy13204        134 FLSP  137 (189)
Q Consensus       134 ~~np  137 (189)
                      ++|.
T Consensus       155 i~D~  158 (283)
T PRK00811        155 IVDS  158 (283)
T ss_pred             EECC
Confidence            9984

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.94  E-value=5.9e-09  Score=67.98  Aligned_cols=75  Identities=28%  Similarity=0.437  Sum_probs=62.3

Q ss_pred             EEEEecCCCChHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCCC
Q psy13204         66 VVIDGFCGCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGG  141 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~  141 (189)
                      +++|+|||.|.++..+++ ...+++++|+++.++..+++.....+. .++.++..|..+..  ....+|++++++|++.
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhccccCCceEEEEEccceee
Confidence            479999999999999987 577899999999999998864443333 47899999998875  3567999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK04148 hypothetical protein; Provisional

Probab=98.94  E-value=1.6e-08  Score=69.85  Aligned_cols=81  Identities=17%  Similarity=0.216  Sum_probs=62.9

Q ss_pred             HHHHHHHHhCCC--CCEEEEecCCCCh-HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--
Q psy13204         52 KVAQHIASRCKA--SDVVIDGFCGCGG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--  126 (189)
Q Consensus        52 ~~~~~~~~~~~~--~~~vlD~g~G~G~-~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--  126 (189)
                      .+.+.+.+.+..  +.+++|+|||.|. .+..+++.|..|+++|+++.+++.++++        .++++++|.++...  
T Consensus         3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~   74 (134)
T PRK04148          3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI   74 (134)
T ss_pred             HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH
Confidence            355666665543  5789999999996 8889998899999999999998887665        35889999987652  


Q ss_pred             CCCccEEEE-CCCCC
Q psy13204        127 SLQGDVVFL-SPPWG  140 (189)
Q Consensus       127 ~~~~D~v~~-npp~~  140 (189)
                      -..+|+|++ .||-.
T Consensus        75 y~~a~liysirpp~e   89 (134)
T PRK04148         75 YKNAKLIYSIRPPRD   89 (134)
T ss_pred             HhcCCEEEEeCCCHH
Confidence            246888887 45544

>PRK04457 spermidine synthase; Provisional

Probab=98.94  E-value=2.9e-09  Score=82.41  Aligned_cols=75  Identities=12%  Similarity=0.162  Sum_probs=63.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSP  137 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~np  137 (189)
                      .+.+|+|+|||+|.++..+++.  +.+++++|+++++++.|++++...+..++++++++|+.++.  ...+||+|++|.
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            4789999999999999999876  56899999999999999998765544358999999998765  235799999984

>KOG1500|consensus

Probab=98.92  E-value=7e-09  Score=81.00  Aligned_cols=74  Identities=19%  Similarity=0.237  Sum_probs=66.7

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp  138 (189)
                      ++.|+|+|||+|.++.+++++|+ +|+++|-+ +|.++|+.-++-+.++++|+++.+.+++..-.+++|++++.|.
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPM  252 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPM  252 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccc
Confidence            88999999999999999999975 69999997 4899999999989998999999999999875578999999765

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.92  E-value=1e-08  Score=76.63  Aligned_cols=85  Identities=18%  Similarity=0.279  Sum_probs=71.3

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEe-CCcccCCC--
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ-GDFFALAP--  126 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~--  126 (189)
                      +...++... .++++|++|.+.|..+++++..   ..+++.+|++++..+.|++|++..|+.+++..+. +|+.+.+.  
T Consensus        50 ~L~~L~~~~-~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~  128 (219)
T COG4122          50 LLRLLARLS-GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL  128 (219)
T ss_pred             HHHHHHHhc-CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence            444444444 4889999999999999999986   4589999999999999999999999977789999 58888763  


Q ss_pred             -CCCccEEEECCC
Q psy13204        127 -SLQGDVVFLSPP  138 (189)
Q Consensus       127 -~~~~D~v~~npp  138 (189)
                       ..+||+||+|.-
T Consensus       129 ~~~~fDliFIDad  141 (219)
T COG4122         129 LDGSFDLVFIDAD  141 (219)
T ss_pred             cCCCccEEEEeCC
Confidence             478999999843

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.89  E-value=9.9e-09  Score=78.45  Aligned_cols=85  Identities=18%  Similarity=0.201  Sum_probs=71.8

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC---
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---  126 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---  126 (189)
                      +...++...+ .++||++|+++|..++++++.   +.+++++|.+++..+.|++++...|+.++++++.+|+.+.++   
T Consensus        70 lL~~l~~~~~-ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~  148 (247)
T PLN02589         70 FLNMLLKLIN-AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI  148 (247)
T ss_pred             HHHHHHHHhC-CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence            3444444444 789999999999999999875   568999999999999999999999998899999999988652   


Q ss_pred             -----CCCccEEEECCC
Q psy13204        127 -----SLQGDVVFLSPP  138 (189)
Q Consensus       127 -----~~~~D~v~~npp  138 (189)
                           ..+||+||+|.-
T Consensus       149 ~~~~~~~~fD~iFiDad  165 (247)
T PLN02589        149 EDGKYHGTFDFIFVDAD  165 (247)
T ss_pred             hccccCCcccEEEecCC
Confidence                 258999999855

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.88  E-value=1.1e-08  Score=80.85  Aligned_cols=102  Identities=16%  Similarity=0.173  Sum_probs=72.6

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ++.+|+|+|||+|.+++.++++  ..+++++|. +.+++.+++++...++.++++++.+|+.+... ..+|+|++.-..+
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-~~~D~v~~~~~lh  226 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-PEADAVLFCRILY  226 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-CCCCEEEeEhhhh
Confidence            3679999999999999999988  468999998 78999999999999987789999999986432 2369887644333


Q ss_pred             CCcccc---ccccccccCcCCCCchhHHHH
Q psy13204        141 GPEYAR---SSFSIDNIFPEQGGGRRLFQV  167 (189)
Q Consensus       141 ~~~~~~---~~~~~~~~l~~~~~g~~~~~~  167 (189)
                      ......   ....+.+.+++ +|.+.+.+.
T Consensus       227 ~~~~~~~~~il~~~~~~L~p-gG~l~i~d~  255 (306)
T TIGR02716       227 SANEQLSTIMCKKAFDAMRS-GGRLLILDM  255 (306)
T ss_pred             cCChHHHHHHHHHHHHhcCC-CCEEEEEEe
Confidence            222211   23345556643 133344443

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.88  E-value=1.1e-08  Score=76.86  Aligned_cols=76  Identities=28%  Similarity=0.371  Sum_probs=62.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC---eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  138 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp  138 (189)
                      ++.+|+|+|||+|..+..+++...   +++++|+++.+++.++++..   ...+++++.+|+.+.. +...||+|+++-.
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~  115 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG  115 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence            478999999999999999988743   89999999999999988875   2247899999998865 4467999998655


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      .+.
T Consensus       116 ~~~  118 (223)
T TIGR01934       116 LRN  118 (223)
T ss_pred             eCC
Confidence            443

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG1499|consensus

Probab=98.87  E-value=9.5e-09  Score=80.74  Aligned_cols=71  Identities=21%  Similarity=0.301  Sum_probs=64.1

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~  135 (189)
                      ++.|+|+|||+|-+++++|++|+ +|+|+|.+.-+ +.|++.+..+++.+.++++.+.+.+.. |..++|+|++
T Consensus        61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvS  133 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVS  133 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEee
Confidence            89999999999999999999976 59999998754 999999999999777999999998875 6678999998

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.85  E-value=2.5e-08  Score=75.17  Aligned_cols=98  Identities=18%  Similarity=0.298  Sum_probs=68.8

Q ss_pred             cccccChH-HHHHHHHHhC-CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH------------HhC
Q psy13204         44 SWYSVTPE-KVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS------------VYG  109 (189)
Q Consensus        44 ~~~~~~~~-~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~------------~~~  109 (189)
                      +|.+..+. .+.+...... .++.+|+++|||.|....+++.+|.+|+|+|+|+.+++.+.+...            ...
T Consensus        22 ~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~  101 (226)
T PRK13256         22 GFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK  101 (226)
T ss_pred             CCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence            55454443 2334443332 336899999999999999999999999999999999999755321            011


Q ss_pred             CCCceEEEeCCcccCCC----CCCccEEEECCCCCCC
Q psy13204        110 VSHKIQFIQGDFFALAP----SLQGDVVFLSPPWGGP  142 (189)
Q Consensus       110 ~~~~~~~~~~d~~~~~~----~~~~D~v~~npp~~~~  142 (189)
                       ..++++.++|++++.+    ...||+|+----+...
T Consensus       102 -~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al  137 (226)
T PRK13256        102 -GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL  137 (226)
T ss_pred             -cCceEEEEccCcCCCccccccCCcCeeeeehhHhcC
Confidence             1378999999999853    2468987654444443

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.85  E-value=2.2e-08  Score=78.08  Aligned_cols=80  Identities=19%  Similarity=0.168  Sum_probs=49.2

Q ss_pred             CCEEEEecCCCChH-HHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEeCCcc----cCC--CCCCccEEE
Q psy13204         64 SDVVIDGFCGCGGN-TIQFAA-VCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFF----ALA--PSLQGDVVF  134 (189)
Q Consensus        64 ~~~vlD~g~G~G~~-~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~----~~~--~~~~~D~v~  134 (189)
                      ..++||+|+|...+ .+-.++ .+++.+|.|+++.+++.|++|+..+ ++..+|+++.....    +..  +...||..+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            34789999998764 343333 4999999999999999999999999 89888988866422    212  345899999


Q ss_pred             ECCCCCCCc
Q psy13204        135 LSPPWGGPE  143 (189)
Q Consensus       135 ~npp~~~~~  143 (189)
                      |||||....
T Consensus       183 CNPPFy~s~  191 (299)
T PF05971_consen  183 CNPPFYSSQ  191 (299)
T ss_dssp             E-----SS-
T ss_pred             cCCccccCh
Confidence            999999754

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PTZ00146 fibrillarin; Provisional

Probab=98.85  E-value=3.2e-08  Score=76.98  Aligned_cols=90  Identities=17%  Similarity=0.055  Sum_probs=65.0

Q ss_pred             cccChHHHHHHHHHh-----CCCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Q psy13204         46 YSVTPEKVAQHIASR-----CKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFI  117 (189)
Q Consensus        46 ~~~~~~~~~~~~~~~-----~~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  117 (189)
                      |.+.+..+++.+..-     ++++.+|||+|||+|.++..++...   .+|+++|+++.+.+.....+...   .++.++
T Consensus       110 w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I  186 (293)
T PTZ00146        110 WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPI  186 (293)
T ss_pred             eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEE
Confidence            444555666665332     3458899999999999999999873   57999999998765554443322   378899


Q ss_pred             eCCcccCC----CCCCccEEEECCC
Q psy13204        118 QGDFFALA----PSLQGDVVFLSPP  138 (189)
Q Consensus       118 ~~d~~~~~----~~~~~D~v~~npp  138 (189)
                      .+|+....    ....+|+|++|-.
T Consensus       187 ~~Da~~p~~y~~~~~~vDvV~~Dva  211 (293)
T PTZ00146        187 IEDARYPQKYRMLVPMVDVIFADVA  211 (293)
T ss_pred             ECCccChhhhhcccCCCCEEEEeCC
Confidence            99986431    2347999999874

>PRK03612 spermidine synthase; Provisional

Probab=98.84  E-value=1.2e-08  Score=86.11  Aligned_cols=80  Identities=19%  Similarity=0.200  Sum_probs=64.3

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHh-----CCC-CceEEEeCCcccCC--CCCCcc
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVY-----GVS-HKIQFIQGDFFALA--PSLQGD  131 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~-----~~~-~~~~~~~~d~~~~~--~~~~~D  131 (189)
                      +++++|+|+|||+|..+.++.+..  .+++++|+|+++++.++++....     ... ++++++.+|..++.  ...+||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            457899999999999999998873  68999999999999999853211     121 37899999998865  346899


Q ss_pred             EEEECCCCCC
Q psy13204        132 VVFLSPPWGG  141 (189)
Q Consensus       132 ~v~~npp~~~  141 (189)
                      +|++|+|...
T Consensus       376 vIi~D~~~~~  385 (521)
T PRK03612        376 VIIVDLPDPS  385 (521)
T ss_pred             EEEEeCCCCC
Confidence            9999988653

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.84  E-value=5.6e-09  Score=80.91  Aligned_cols=106  Identities=15%  Similarity=0.183  Sum_probs=70.9

Q ss_pred             CCEEEEecCCCCh----HHHHHHHh-------CCeEEEEeCCHHHHHHHHHHHH----HhC-------------------
Q psy13204         64 SDVVIDGFCGCGG----NTIQFAAV-------CQKVISIDIDPAKLRLAQHNAS----VYG-------------------  109 (189)
Q Consensus        64 ~~~vlD~g~G~G~----~~~~~~~~-------~~~v~~vD~~~~~~~~a~~~~~----~~~-------------------  109 (189)
                      +.+|+|+|||+|.    +++.+++.       +.+|+|+|+|+.+++.|++...    ..+                   
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v  179 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV  179 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence            5699999999996    45555543       3579999999999999987531    111                   


Q ss_pred             ---CCCceEEEeCCcccCC-CCCCccEEEECCCCCCCcccc---ccccccccCcCCCCchhHHHHhhhc
Q psy13204        110 ---VSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGI  171 (189)
Q Consensus       110 ---~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~~~~~---~~~~~~~~l~~~~~g~~~~~~~~~~  171 (189)
                         +..++++.++|+.+.. +...||+|++.-.++..+...   ....+.+.|++  ||+.++.....+
T Consensus       180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p--GG~L~lg~~E~~  246 (264)
T smart00138      180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP--GGYLFLGHSESL  246 (264)
T ss_pred             ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC--CeEEEEECcccC
Confidence               1136899999998875 467899999955554433222   23345566655  577665554443

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=6.1e-08  Score=78.13  Aligned_cols=83  Identities=27%  Similarity=0.439  Sum_probs=70.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CC-CCccEEE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PS-LQGDVVF  134 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~-~~~D~v~  134 (189)
                      +|.+|+|++++.|+=+..+++.    +..|+++|.++.-++..++|+.+.|+ .++.+++.|.....   .. ..||.|+
T Consensus       156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-~nv~~~~~d~~~~~~~~~~~~~fD~iL  234 (355)
T COG0144         156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-RNVIVVNKDARRLAELLPGGEKFDRIL  234 (355)
T ss_pred             CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-CceEEEecccccccccccccCcCcEEE
Confidence            3899999999999999999886    34579999999999999999999999 46888888876554   22 2599999


Q ss_pred             ECCCCCCCcccc
Q psy13204        135 LSPPWGGPEYAR  146 (189)
Q Consensus       135 ~npp~~~~~~~~  146 (189)
                      .|+||.+.+...
T Consensus       235 lDaPCSg~G~ir  246 (355)
T COG0144         235 LDAPCSGTGVIR  246 (355)
T ss_pred             ECCCCCCCcccc
Confidence            999999988665

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.83  E-value=4.6e-09  Score=75.66  Aligned_cols=70  Identities=30%  Similarity=0.336  Sum_probs=62.4

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~  135 (189)
                      .+.+.|+|+|+|.++..++....+|+++|.+|....+|.+|+...|. .++.++++|+.+..- ...|+|+|
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvic  102 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVIC  102 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHH
Confidence            47899999999999999999989999999999999999999988888 699999999988742 45677776

>PRK01581 speE spermidine synthase; Validated

Probab=98.82  E-value=2.5e-08  Score=79.64  Aligned_cols=82  Identities=17%  Similarity=0.092  Sum_probs=64.0

Q ss_pred             HhCCCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHH--H---HhCC-CCceEEEeCCcccCC--CCC
Q psy13204         59 SRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNA--S---VYGV-SHKIQFIQGDFFALA--PSL  128 (189)
Q Consensus        59 ~~~~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~--~---~~~~-~~~~~~~~~d~~~~~--~~~  128 (189)
                      .....+.+||++|||.|..+.++.+..  .+++++|+++++++.|++..  .   ...+ ..+++++.+|+.++.  ...
T Consensus       146 ~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~  225 (374)
T PRK01581        146 SKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS  225 (374)
T ss_pred             HhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence            334558899999999999988888763  68999999999999999621  1   1111 248999999999876  345


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .||+|++|.|-.
T Consensus       226 ~YDVIIvDl~DP  237 (374)
T PRK01581        226 LYDVIIIDFPDP  237 (374)
T ss_pred             CccEEEEcCCCc
Confidence            799999998653

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.81  E-value=2e-08  Score=75.21  Aligned_cols=65  Identities=26%  Similarity=0.245  Sum_probs=52.4

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---------CCCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---------APSL  128 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~  128 (189)
                      ++++..|||+|||+|.++..+++..   .+|+|+|+++ +          ... .+++++++|+.+.         ....
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHHhCCC
Confidence            4668899999999999999998872   5899999998 1          122 3689999998874         2456


Q ss_pred             CccEEEECC
Q psy13204        129 QGDVVFLSP  137 (189)
Q Consensus       129 ~~D~v~~np  137 (189)
                      .+|+|++|+
T Consensus       117 ~~D~V~S~~  125 (209)
T PRK11188        117 KVQVVMSDM  125 (209)
T ss_pred             CCCEEecCC
Confidence            899999986

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.81  E-value=2.9e-08  Score=76.92  Aligned_cols=88  Identities=22%  Similarity=0.283  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC-
Q psy13204         51 EKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-  127 (189)
Q Consensus        51 ~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-  127 (189)
                      ..+.+.+++.+.  ++..|+|+|+|.|.++..+.+.+.+++++|+++.+++..++...   ...+++++.+|+.++... 
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~   92 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYD   92 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHH
Confidence            346666666655  38899999999999999999999999999999999999887655   225899999999998632 


Q ss_pred             ---CCccEEEECCCCCC
Q psy13204        128 ---LQGDVVFLSPPWGG  141 (189)
Q Consensus       128 ---~~~D~v~~npp~~~  141 (189)
                         .....|++|.||..
T Consensus        93 ~~~~~~~~vv~NlPy~i  109 (262)
T PF00398_consen   93 LLKNQPLLVVGNLPYNI  109 (262)
T ss_dssp             HCSSSEEEEEEEETGTG
T ss_pred             hhcCCceEEEEEecccc
Confidence               35679999999954

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.80  E-value=2.3e-08  Score=78.23  Aligned_cols=77  Identities=22%  Similarity=0.359  Sum_probs=63.8

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCC--CccEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSL--QGDVV  133 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~--~~D~v  133 (189)
                      .++..++|.+||.|+.+..+++..   .+|+|+|.++.+++.|++++..   .+++.++++|..++.   +..  .+|.|
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~vDgI   94 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKVDGI   94 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence            347799999999999999999873   6899999999999999988754   258999999998765   222  79999


Q ss_pred             EECCCCCC
Q psy13204        134 FLSPPWGG  141 (189)
Q Consensus       134 ~~npp~~~  141 (189)
                      ++|.=..-
T Consensus        95 l~DLGvSs  102 (296)
T PRK00050         95 LLDLGVSS  102 (296)
T ss_pred             EECCCccc
Confidence            99865544

>PLN02366 spermidine synthase

Probab=98.80  E-value=5.9e-08  Score=76.60  Aligned_cols=79  Identities=15%  Similarity=0.148  Sum_probs=64.5

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh--CC-CCceEEEeCCcccCC---CCCCccE
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALA---PSLQGDV  132 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~---~~~~~D~  132 (189)
                      .+.+++||++|||.|..+.++++.  ..+|+.+|+++.+++.|++.+...  ++ ..+++++.+|+.++.   +..+||+
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            345889999999999999999887  358999999999999999987643  22 237999999987765   2458999


Q ss_pred             EEECCCC
Q psy13204        133 VFLSPPW  139 (189)
Q Consensus       133 v~~npp~  139 (189)
                      |++|.+-
T Consensus       169 Ii~D~~d  175 (308)
T PLN02366        169 IIVDSSD  175 (308)
T ss_pred             EEEcCCC
Confidence            9998654

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.80  E-value=4.4e-08  Score=72.52  Aligned_cols=77  Identities=23%  Similarity=0.349  Sum_probs=61.9

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEECC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSP  137 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~np  137 (189)
                      ...+||+|||.|.+.+.+|+.  ...++|+|+....+..+..++...++ .|+.++++|+...+    +..++|.|+++=
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F   96 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINF   96 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeC
Confidence            348899999999999999987  67899999999999999999999998 69999999998854    567899988875


Q ss_pred             CCCC
Q psy13204        138 PWGG  141 (189)
Q Consensus       138 p~~~  141 (189)
                      |--+
T Consensus        97 PDPW  100 (195)
T PF02390_consen   97 PDPW  100 (195)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            5443

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.79  E-value=2.4e-08  Score=75.13  Aligned_cols=100  Identities=22%  Similarity=0.368  Sum_probs=66.5

Q ss_pred             cccccChH-HHHHHHHH-hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH-h------C----C
Q psy13204         44 SWYSVTPE-KVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV-Y------G----V  110 (189)
Q Consensus        44 ~~~~~~~~-~~~~~~~~-~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~------~----~  110 (189)
                      .|.+..+. .+.+.+.. ..+.+.+||.+|||.|.....++++|.+|+|+|+|+.+++.+.+.... .      +    -
T Consensus        16 ~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~   95 (218)
T PF05724_consen   16 PWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ   95 (218)
T ss_dssp             TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence            44443332 24444433 134467999999999999999999999999999999999998433221 0      0    0


Q ss_pred             CCceEEEeCCcccCCCCC--CccEEEECCCCCCCc
Q psy13204        111 SHKIQFIQGDFFALAPSL--QGDVVFLSPPWGGPE  143 (189)
Q Consensus       111 ~~~~~~~~~d~~~~~~~~--~~D~v~~npp~~~~~  143 (189)
                      ..++++.++|+++..+..  +||+|+=---+..+.
T Consensus        96 ~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alp  130 (218)
T PF05724_consen   96 AGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALP  130 (218)
T ss_dssp             TSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-
T ss_pred             CCceEEEEcccccCChhhcCCceEEEEecccccCC
Confidence            136799999999976433  699988654555443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG1541|consensus

Probab=98.76  E-value=4e-08  Score=72.62  Aligned_cols=66  Identities=23%  Similarity=0.190  Sum_probs=54.4

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~  135 (189)
                      +..+||+|||+|..+..+...|...+|+|+|+.|++.|.+.--      .-.++.+|.-+-.  +..+||.+|+
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~------egdlil~DMG~GlpfrpGtFDg~IS  118 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVEREL------EGDLILCDMGEGLPFRPGTFDGVIS  118 (270)
T ss_pred             CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhh------hcCeeeeecCCCCCCCCCccceEEE
Confidence            6789999999999999999999999999999999999987322      2367777776544  5678998776

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=98.73  E-value=5.3e-08  Score=73.34  Aligned_cols=79  Identities=25%  Similarity=0.377  Sum_probs=48.2

Q ss_pred             CEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHH---HHHHhCC-----CCceEEEeCCcccCC--CCCCccEEE
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH---NASVYGV-----SHKIQFIQGDFFALA--PSLQGDVVF  134 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~---~~~~~~~-----~~~~~~~~~d~~~~~--~~~~~D~v~  134 (189)
                      .+|||..+|.|..++-++..|++|+++|.||-.....+.   ++....-     ..+++++++|..+++  +..++|+|+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY  156 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY  156 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence            489999999999999999889999999999976544433   3322211     137899999999987  456899999


Q ss_pred             ECCCCCCCc
Q psy13204        135 LSPPWGGPE  143 (189)
Q Consensus       135 ~npp~~~~~  143 (189)
                      +||+|....
T Consensus       157 ~DPMFp~~~  165 (234)
T PF04445_consen  157 FDPMFPERK  165 (234)
T ss_dssp             E--S-----
T ss_pred             ECCCCCCcc
Confidence            999998744

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=98.71  E-value=7.6e-08  Score=75.05  Aligned_cols=102  Identities=19%  Similarity=0.201  Sum_probs=71.3

Q ss_pred             EEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC---CCCccEEEECCCCCC
Q psy13204         66 VVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSPPWGG  141 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~npp~~~  141 (189)
                      +|+|++||.|+++..+.+.|.+ +.++|+++.+++..+.|...       .++++|+.+...   ...+|+++++|||+.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~   74 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP   74 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCChh
Confidence            5899999999999999988877 57899999999998888641       256677776652   346999999999998


Q ss_pred             CccccccccccccCcCCCCch-hHHHHhhhcCCceEE
Q psy13204        142 PEYARSSFSIDNIFPEQGGGR-RLFQVARGISPNVGY  177 (189)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~  177 (189)
                      .+.........+  +. ...+ .++.......|+..+
T Consensus        75 fS~ag~~~~~~d--~r-~~L~~~~~~~i~~~~P~~~v  108 (275)
T cd00315          75 FSIAGKRKGFED--TR-GTLFFEIIRILKEKKPKYFL  108 (275)
T ss_pred             hhHHhhcCCCCC--ch-HHHHHHHHHHHHhcCCCEEE
Confidence            766552221111  11 1112 555666666666544

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>TIGR00417 speE spermidine synthase

Probab=98.71  E-value=1.3e-07  Score=73.63  Aligned_cols=78  Identities=17%  Similarity=0.138  Sum_probs=62.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC--C-CCceEEEeCCcccCC--CCCCccEEEE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALA--PSLQGDVVFL  135 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~--~~~~~D~v~~  135 (189)
                      .+.+||++|||+|..+..+.+.  ..+++++|+++++++.+++++...+  + ..+++++.+|..++.  ...+||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            3679999999999999888776  3579999999999999999875432  1 136888899987754  2468999999


Q ss_pred             CCCCC
Q psy13204        136 SPPWG  140 (189)
Q Consensus       136 npp~~  140 (189)
                      |++..
T Consensus       152 D~~~~  156 (270)
T TIGR00417       152 DSTDP  156 (270)
T ss_pred             eCCCC
Confidence            98754

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.70  E-value=7.4e-08  Score=70.92  Aligned_cols=65  Identities=29%  Similarity=0.396  Sum_probs=50.5

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---------CCCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---------APSL  128 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~  128 (189)
                      ++++.+|||+|||+|.++..+++.   ..+++++|+++.+           .. .+++++++|+.+.         .+..
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCC
Confidence            355899999999999999988776   3479999999854           12 3678888887653         2345


Q ss_pred             CccEEEECC
Q psy13204        129 QGDVVFLSP  137 (189)
Q Consensus       129 ~~D~v~~np  137 (189)
                      .+|+|++|+
T Consensus        98 ~~D~V~~~~  106 (188)
T TIGR00438        98 KVDVVMSDA  106 (188)
T ss_pred             CccEEEcCC
Confidence            799999985

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.68  E-value=1.1e-07  Score=74.32  Aligned_cols=86  Identities=26%  Similarity=0.381  Sum_probs=72.1

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEEC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLS  136 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~n  136 (189)
                      ++..|||+|++.|+-+..+++.   ...+++.|+++..+...+.++...|+ .++.+.+.|.....   ....||.|+.|
T Consensus        85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~~fd~VlvD  163 (283)
T PF01189_consen   85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPESKFDRVLVD  163 (283)
T ss_dssp             TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred             ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeeccccccccccccccchhhcC
Confidence            3889999999999999998876   35899999999999999999999998 57888888887763   33469999999


Q ss_pred             CCCCCCccccccc
Q psy13204        137 PPWGGPEYARSSF  149 (189)
Q Consensus       137 pp~~~~~~~~~~~  149 (189)
                      +||.+.+...+..
T Consensus       164 aPCSg~G~i~r~p  176 (283)
T PF01189_consen  164 APCSGLGTIRRNP  176 (283)
T ss_dssp             CSCCCGGGTTTCT
T ss_pred             CCccchhhhhhcc
Confidence            9999987665333

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG3010|consensus

Probab=98.66  E-value=1e-08  Score=76.60  Aligned_cols=106  Identities=18%  Similarity=0.155  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204         50 PEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL  128 (189)
Q Consensus        50 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~  128 (189)
                      |-.+...++..-.....++|+|||+|..++.++..-.+|+|+|+|++|++.|++..+..-..........+..++. ..+
T Consensus        20 Ptdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~   99 (261)
T KOG3010|consen   20 PTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEE   99 (261)
T ss_pred             cHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCc
Confidence            3456666666665455889999999988888888888999999999999998776543322224455555555554 467


Q ss_pred             CccEEEECCCCCCCccccccccccccC
Q psy13204        129 QGDVVFLSPPWGGPEYARSSFSIDNIF  155 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~~~~~~~~~l  155 (189)
                      ++|+|++---+|+.+.........++|
T Consensus       100 SVDlI~~Aqa~HWFdle~fy~~~~rvL  126 (261)
T KOG3010|consen  100 SVDLITAAQAVHWFDLERFYKEAYRVL  126 (261)
T ss_pred             ceeeehhhhhHHhhchHHHHHHHHHHc
Confidence            899999876666655555444455555

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=98.61  E-value=2.4e-07  Score=73.69  Aligned_cols=101  Identities=23%  Similarity=0.358  Sum_probs=70.6

Q ss_pred             EEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEECCCCC
Q psy13204         66 VVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSPPWG  140 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~npp~~  140 (189)
                      +++|++||.|+++..+.++|.+ +.++|+++.+.+..+.|..        ....+|+.+..    +. .+|+++..|||+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ   72 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ   72 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence            6899999999999999999876 5689999999999988874        77888888765    32 699999999999


Q ss_pred             CCccccccccccccCcCCCCch-hHHHHhhhcCCceEEE
Q psy13204        141 GPEYARSSFSIDNIFPEQGGGR-RLFQVARGISPNVGYY  178 (189)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~  178 (189)
                      ..+.........+-  . ...+ .++.......|...++
T Consensus        73 ~fS~ag~~~~~~d~--r-~~L~~~~~~~v~~~~Pk~~~~  108 (335)
T PF00145_consen   73 GFSIAGKRKGFDDP--R-NSLFFEFLRIVKELKPKYFLL  108 (335)
T ss_dssp             TTSTTSTHHCCCCH--T-TSHHHHHHHHHHHHS-SEEEE
T ss_pred             eEeccccccccccc--c-chhhHHHHHHHhhccceEEEe
Confidence            98776632222221  1 1133 6677777777776554

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG4300|consensus

Probab=98.61  E-value=2.6e-08  Score=72.87  Aligned_cols=101  Identities=17%  Similarity=0.170  Sum_probs=74.4

Q ss_pred             CEEEEecCCCChHHHHHH-HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceE-EEeCCcccCC--CCCCccEEEECCCCC
Q psy13204         65 DVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQ-FIQGDFFALA--PSLQGDVVFLSPPWG  140 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~--~~~~~D~v~~npp~~  140 (189)
                      ..||++|||+|..--+.- ..+.+|+++|.++.|-+.+.+.++.+.- .++. +++++..+..  ++.++|+|++  .+.
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~--Tlv  154 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVC--TLV  154 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEE--EEE
Confidence            357999999999665553 3488999999999999999998887744 4665 9999999887  7789999988  344


Q ss_pred             CCcccc---ccccccccC-cCCCCchhHHHHhhh
Q psy13204        141 GPEYAR---SSFSIDNIF-PEQGGGRRLFQVARG  170 (189)
Q Consensus       141 ~~~~~~---~~~~~~~~l-~~~~~g~~~~~~~~~  170 (189)
                      .++..+   .+..+.++| |+  |.+.++++.++
T Consensus       155 LCSve~~~k~L~e~~rlLRpg--G~iifiEHva~  186 (252)
T KOG4300|consen  155 LCSVEDPVKQLNEVRRLLRPG--GRIIFIEHVAG  186 (252)
T ss_pred             EeccCCHHHHHHHHHHhcCCC--cEEEEEecccc
Confidence            444333   445567777 54  44566666543

>KOG2915|consensus

Probab=98.54  E-value=8.2e-07  Score=67.66  Aligned_cols=84  Identities=18%  Similarity=0.257  Sum_probs=73.1

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEE
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVF  134 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~  134 (189)
                      +.+|.+|++-|.|+|.++.++++..   .+++.+|......+.|++.++..++.+++++++-|+...-   .+..+|.|+
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF  182 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF  182 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence            4569999999999999999999984   6899999999999999999999999889999999987653   467899999


Q ss_pred             ECCCCCCCcc
Q psy13204        135 LSPPWGGPEY  144 (189)
Q Consensus       135 ~npp~~~~~~  144 (189)
                      +|.|--+...
T Consensus       183 LDlPaPw~Ai  192 (314)
T KOG2915|consen  183 LDLPAPWEAI  192 (314)
T ss_pred             EcCCChhhhh
Confidence            9988766443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.54  E-value=3.5e-09  Score=78.55  Aligned_cols=112  Identities=15%  Similarity=0.151  Sum_probs=71.4

Q ss_pred             ChHHHHHHHHHhCC-CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--
Q psy13204         49 TPEKVAQHIASRCK-ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--  125 (189)
Q Consensus        49 ~~~~~~~~~~~~~~-~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--  125 (189)
                      .|+.+++.+...-. +-.+++|+|||+|..+..+..+..+++|+|+|..|++.|.++-    +  .-+..++++..+.  
T Consensus       110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg----~--YD~L~~Aea~~Fl~~  183 (287)
T COG4976         110 VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG----L--YDTLYVAEAVLFLED  183 (287)
T ss_pred             cHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhcc----c--hHHHHHHHHHHHhhh
Confidence            56666665543222 1468999999999999999999899999999999999986542    2  2234445544444  


Q ss_pred             -CCCCccEEEECCCCCCCccccc-cccccccCcCCCCchhHHHHh
Q psy13204        126 -PSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGGRRLFQVA  168 (189)
Q Consensus       126 -~~~~~D~v~~npp~~~~~~~~~-~~~~~~~l~~~~~g~~~~~~~  168 (189)
                       .+..||+|+.--.+..++..+. ......++.+  ||+..|+.-
T Consensus       184 ~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~--gGlfaFSvE  226 (287)
T COG4976         184 LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAP--GGLFAFSVE  226 (287)
T ss_pred             ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCC--CceEEEEec
Confidence             4567999887433333333332 2234445533  466555543

>PLN02823 spermine synthase

Probab=98.54  E-value=6.1e-07  Score=71.68  Aligned_cols=77  Identities=18%  Similarity=0.158  Sum_probs=63.6

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC--C-CCceEEEeCCcccCC--CCCCccEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALA--PSLQGDVVF  134 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~--~~~~~D~v~  134 (189)
                      +..++||.+|+|.|..+.++.+.  ..+++.+|++++.++.|++.+...+  + ..+++++.+|..+++  ...+||+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            34779999999999999988875  4679999999999999999876432  1 247999999999886  345899999


Q ss_pred             ECCC
Q psy13204        135 LSPP  138 (189)
Q Consensus       135 ~npp  138 (189)
                      +|.+
T Consensus       182 ~D~~  185 (336)
T PLN02823        182 GDLA  185 (336)
T ss_pred             ecCC
Confidence            9963

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.54  E-value=3.9e-07  Score=68.81  Aligned_cols=76  Identities=17%  Similarity=0.258  Sum_probs=65.6

Q ss_pred             CEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEECCC
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSPP  138 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~npp  138 (189)
                      ..+||+|||.|.+.+.+|+..  ...+|||+....+..|...+...++ .|+.+++.|+.+.+    ++.+.|-|++|=|
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l-~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL-KNLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            589999999999999999984  4689999999999999999999998 49999999998865    4448998888766


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      --+
T Consensus       129 DPW  131 (227)
T COG0220         129 DPW  131 (227)
T ss_pred             CCC
Confidence            444

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.53  E-value=4.9e-07  Score=65.71  Aligned_cols=75  Identities=19%  Similarity=0.201  Sum_probs=50.9

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEeCCcccCC-----CCCCccEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALA-----PSLQGDVVF  134 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~-----~~~~~D~v~  134 (189)
                      +.+|||+|||+|..++.+++.  +.+|+.-|.++ .++.++.|+..++  ...++.+...|..+..     ....||+|+
T Consensus        46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Il  124 (173)
T PF10294_consen   46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVIL  124 (173)
T ss_dssp             TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEE
T ss_pred             CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEE
Confidence            889999999999999999998  77899999999 9999999999887  4457888887765422     345799988


Q ss_pred             E-CCCC
Q psy13204        135 L-SPPW  139 (189)
Q Consensus       135 ~-npp~  139 (189)
                      . |--|
T Consensus       125 asDv~Y  130 (173)
T PF10294_consen  125 ASDVLY  130 (173)
T ss_dssp             EES--S
T ss_pred             Eecccc
Confidence            7 4333

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.51  E-value=6.2e-07  Score=63.60  Aligned_cols=92  Identities=20%  Similarity=0.135  Sum_probs=73.1

Q ss_pred             ChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204         49 TPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  123 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  123 (189)
                      +...+++.|+..+.+  |..|+++|.|+|-++-+..++|   ..++++|.|++.+....+..      +.++++++|+.+
T Consensus        32 sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~  105 (194)
T COG3963          32 SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFD  105 (194)
T ss_pred             CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhh
Confidence            335677778777765  7799999999999999998875   46899999999998876654      367799999887


Q ss_pred             CC------CCCCccEEEECCCCCCCcccc
Q psy13204        124 LA------PSLQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       124 ~~------~~~~~D~v~~npp~~~~~~~~  146 (189)
                      ..      .+..||.|++.-|+--.....
T Consensus       106 l~~~l~e~~gq~~D~viS~lPll~~P~~~  134 (194)
T COG3963         106 LRTTLGEHKGQFFDSVISGLPLLNFPMHR  134 (194)
T ss_pred             HHHHHhhcCCCeeeeEEeccccccCcHHH
Confidence            64      456799999998887544433

>KOG1663|consensus

Probab=98.49  E-value=1.5e-06  Score=64.80  Aligned_cols=92  Identities=22%  Similarity=0.269  Sum_probs=75.3

Q ss_pred             cccChH--HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCC
Q psy13204         46 YSVTPE--KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD  120 (189)
Q Consensus        46 ~~~~~~--~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d  120 (189)
                      ....++  ++...+.+.++ +++.+|+|.-+|..++.+|.+   +++|+++|+++..++.+.+-.+..|....+++++++
T Consensus        55 m~v~~d~g~fl~~li~~~~-ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~  133 (237)
T KOG1663|consen   55 MLVGPDKGQFLQMLIRLLN-AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP  133 (237)
T ss_pred             eecChHHHHHHHHHHHHhC-CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence            444554  23444444444 889999999999999999887   889999999999999999999999998899999999


Q ss_pred             cccCC-------CCCCccEEEECCC
Q psy13204        121 FFALA-------PSLQGDVVFLSPP  138 (189)
Q Consensus       121 ~~~~~-------~~~~~D~v~~npp  138 (189)
                      +.+.+       ...+||.+|.|.=
T Consensus       134 a~esLd~l~~~~~~~tfDfaFvDad  158 (237)
T KOG1663|consen  134 ALESLDELLADGESGTFDFAFVDAD  158 (237)
T ss_pred             hhhhHHHHHhcCCCCceeEEEEccc
Confidence            88765       3568999999854

>KOG2078|consensus

Probab=98.46  E-value=6.9e-08  Score=77.50  Aligned_cols=89  Identities=18%  Similarity=0.199  Sum_probs=74.4

Q ss_pred             CcccCCCcccccCh-HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCc-e
Q psy13204         37 ADNDATESWYSVTP-EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHK-I  114 (189)
Q Consensus        37 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~  114 (189)
                      +++.|....|+.++ ....+.+...+++|..|.|++||.|-+++.+++.+++|++.|++++++++.+.|++.+.+... +
T Consensus       222 ~Fk~DfskVYWnsRL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~i  301 (495)
T KOG2078|consen  222 RFKFDFSKVYWNSRLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAI  301 (495)
T ss_pred             eEEEecceEEeeccchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhhe
Confidence            57777665555544 334455666777799999999999999999999999999999999999999999999988665 8


Q ss_pred             EEEeCCcccCC
Q psy13204        115 QFIQGDFFALA  125 (189)
Q Consensus       115 ~~~~~d~~~~~  125 (189)
                      .+...|+.++.
T Consensus       302 ei~Nmda~~Fl  312 (495)
T KOG2078|consen  302 EIFNMDAKDFL  312 (495)
T ss_pred             eeecccHHHHh
Confidence            99999988776

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.45  E-value=1.5e-06  Score=69.54  Aligned_cols=101  Identities=23%  Similarity=0.333  Sum_probs=73.6

Q ss_pred             CEEEEecCCCChHHHHHHHhCCeE-EEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC----CccEEEECCCC
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVCQKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL----QGDVVFLSPPW  139 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~D~v~~npp~  139 (189)
                      -+++|++||.|++...+.++|.++ .++|+++.+++..+.|...      ..++..|..+.....    .+|+++..|||
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpPC   77 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPPC   77 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCCC
Confidence            479999999999999999999775 5799999999998888642      566777777665211    78999999999


Q ss_pred             CCCccccccccccccCcCCCCch--hHHHHhhhcCCce
Q psy13204        140 GGPEYARSSFSIDNIFPEQGGGR--RLFQVARGISPNV  175 (189)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~  175 (189)
                      +..+.....    ....+..|.+  .++.....+.|..
T Consensus        78 Q~FS~aG~r----~~~~D~R~~L~~~~~r~I~~~~P~~  111 (328)
T COG0270          78 QDFSIAGKR----RGYDDPRGSLFLEFIRLIEQLRPKF  111 (328)
T ss_pred             cchhhcCcc----cCCcCccceeeHHHHHHHHhhCCCE
Confidence            997766622    2232222222  5666666666743

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.45  E-value=1.6e-06  Score=64.54  Aligned_cols=69  Identities=26%  Similarity=0.331  Sum_probs=55.6

Q ss_pred             EEEecCCCChHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC-CccEEEE
Q psy13204         67 VIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QGDVVFL  135 (189)
Q Consensus        67 vlD~g~G~G~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~v~~  135 (189)
                      |+|+||--|.+.+++.+.+.  +++++|+++..++.|++++...++.++++++++|-++..+.. ..|+|++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivI   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVI   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEE
Confidence            68999999999999999865  799999999999999999999999889999999988876444 4788877

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=98.40  E-value=1.6e-06  Score=68.91  Aligned_cols=101  Identities=18%  Similarity=0.199  Sum_probs=69.4

Q ss_pred             EEEecCCCChHHHHHHHhCCeE-EEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCCCCc
Q psy13204         67 VIDGFCGCGGNTIQFAAVCQKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus        67 vlD~g~G~G~~~~~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~~~  143 (189)
                      |+|++||.|+++..+.++|.++ .++|+++.+.+..+.|..      . .+.++|+.+..  ....+|+++..|||+..+
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS   73 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSDIPDFDILLGGFPCQPFS   73 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence            6899999999999999999886 579999999999888863      2 34556766654  223689999999999977


Q ss_pred             cccccccccccCcCCCCch-hHHHHhhhcCCceEE
Q psy13204        144 YARSSFSIDNIFPEQGGGR-RLFQVARGISPNVGY  177 (189)
Q Consensus       144 ~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~  177 (189)
                      .........   ..++..+ .++.......|+.++
T Consensus        74 ~ag~~~~~~---d~r~~L~~~~~r~i~~~~P~~~v  105 (315)
T TIGR00675        74 IAGKRKGFE---DTRGTLFFEIVRILKEKKPKFFL  105 (315)
T ss_pred             hhcccCCCC---CchhhHHHHHHHHHhhcCCCEEE
Confidence            655322211   1111112 455555666666544

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.37  E-value=2.9e-06  Score=59.58  Aligned_cols=73  Identities=26%  Similarity=0.286  Sum_probs=56.0

Q ss_pred             CCCEEEEecCCCChHHHHHHH-----h-CCeEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEeCCcccCCCCCCccEEE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAA-----V-CQKVISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALAPSLQGDVVF  134 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~-----~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~D~v~  134 (189)
                      +...|+|+|||.|.++..++.     . +.+|+++|.++..++.+.......+  ...+..+..++..+.......++++
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  104 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDILV  104 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEEE
Confidence            377999999999999999988     3 7799999999999999988887766  3345666666655443344556666


Q ss_pred             E
Q psy13204        135 L  135 (189)
Q Consensus       135 ~  135 (189)
                      .
T Consensus       105 g  105 (141)
T PF13679_consen  105 G  105 (141)
T ss_pred             E
Confidence            5

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.35  E-value=1.1e-06  Score=64.00  Aligned_cols=80  Identities=26%  Similarity=0.298  Sum_probs=65.9

Q ss_pred             HHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC
Q psy13204         52 KVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL  128 (189)
Q Consensus        52 ~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  128 (189)
                      .+++++..+-+.  +++|||+|+|+|.-++.+++.|+ .|++.|+.|...+.++.|++.++.  ++.++..|...  .+.
T Consensus        66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~~~  141 (218)
T COG3897          66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--SPP  141 (218)
T ss_pred             HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--CCc
Confidence            345555443222  99999999999999999999976 588999999999999999999997  89999999876  456


Q ss_pred             CccEEEE
Q psy13204        129 QGDVVFL  135 (189)
Q Consensus       129 ~~D~v~~  135 (189)
                      .+|+++.
T Consensus       142 ~~Dl~La  148 (218)
T COG3897         142 AFDLLLA  148 (218)
T ss_pred             ceeEEEe
Confidence            7898766

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.32  E-value=6.5e-06  Score=64.73  Aligned_cols=76  Identities=20%  Similarity=0.316  Sum_probs=62.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------CCCCccEEE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVVF  134 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v~  134 (189)
                      ++..++|..+|.|+.+..+++.  ..+|+|+|.++.+++.+++.+...+  .++.+++++..++.      ....+|.|+
T Consensus        20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~~l~~~l~~~~~~~vDgIl   97 (305)
T TIGR00006        20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFANFFEHLDELLVTKIDGIL   97 (305)
T ss_pred             CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence            4779999999999999999876  4789999999999999999876543  48999999988754      224699999


Q ss_pred             ECCCCC
Q psy13204        135 LSPPWG  140 (189)
Q Consensus       135 ~npp~~  140 (189)
                      +|.=..
T Consensus        98 ~DLGvS  103 (305)
T TIGR00006        98 VDLGVS  103 (305)
T ss_pred             EeccCC
Confidence            985443

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK11524 putative methyltransferase; Provisional

Probab=98.31  E-value=3.1e-06  Score=66.34  Aligned_cols=57  Identities=23%  Similarity=0.365  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHhC-CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Q psy13204         50 PEKVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS  106 (189)
Q Consensus        50 ~~~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~  106 (189)
                      |..+.+.+.... .+|+.|||++||+|+.++++.+.+.+.+|+|++++.++.|++++.
T Consensus       194 P~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        194 PEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             hHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            355666655554 459999999999999999999999999999999999999999875

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.31  E-value=6.6e-06  Score=61.33  Aligned_cols=91  Identities=30%  Similarity=0.395  Sum_probs=54.1

Q ss_pred             cChHHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHHH-------HhCC-CCceE
Q psy13204         48 VTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHNAS-------VYGV-SHKIQ  115 (189)
Q Consensus        48 ~~~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~~~  115 (189)
                      ..+..+.+.+ +.+  .++++++|+|||.|...+.++.. +. +++|||+.+...+.|+....       ..|. ..+++
T Consensus        26 i~~~~~~~il-~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~  104 (205)
T PF08123_consen   26 ISPEFVSKIL-DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE  104 (205)
T ss_dssp             CHHHHHHHHH-HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred             cCHHHHHHHH-HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence            3344444433 333  34889999999999998888754 54 59999999998887765432       2333 24688


Q ss_pred             EEeCCcccCC--C--CCCccEEEECCCC
Q psy13204        116 FIQGDFFALA--P--SLQGDVVFLSPPW  139 (189)
Q Consensus       116 ~~~~d~~~~~--~--~~~~D~v~~npp~  139 (189)
                      +..+|+.+..  .  -...|+|++|--.
T Consensus       105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~  132 (205)
T PF08123_consen  105 LIHGDFLDPDFVKDIWSDADVVFVNNTC  132 (205)
T ss_dssp             EECS-TTTHHHHHHHGHC-SEEEE--TT
T ss_pred             eeccCccccHhHhhhhcCCCEEEEeccc
Confidence            8999987643  1  1357999997544

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=98.31  E-value=5.8e-06  Score=61.09  Aligned_cols=109  Identities=23%  Similarity=0.355  Sum_probs=59.9

Q ss_pred             hcCCcccCCCcccccChHHHHHHHHHhC----CC--CCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHH
Q psy13204         34 LADADNDATESWYSVTPEKVAQHIASRC----KA--SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~  103 (189)
                      +.++.-+-...-+..-|-.++..+..+.    ..  +-+++|.|||+|.+..-+.-.    -..|+|-|+++++++.|++
T Consensus        16 fAsG~VL~sApG~p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~k   95 (246)
T PF11599_consen   16 FASGRVLYSAPGFPAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARK   95 (246)
T ss_dssp             CSTTTSS--BTTB----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHH
T ss_pred             hcCCeEEecCCCCCCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHH
Confidence            3344333333333444545555554433    22  558999999999977666432    4579999999999999998


Q ss_pred             HHHHh-----------------------------------------CCCCceEEEeCCcccCC------CCCCccEEEEC
Q psy13204        104 NASVY-----------------------------------------GVSHKIQFIQGDFFALA------PSLQGDVVFLS  136 (189)
Q Consensus       104 ~~~~~-----------------------------------------~~~~~~~~~~~d~~~~~------~~~~~D~v~~n  136 (189)
                      |+...                                         |-.....+.+.|+++..      .....|+|+.|
T Consensus        96 NL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTD  175 (246)
T PF11599_consen   96 NLSLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITD  175 (246)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE
T ss_pred             hhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEec
Confidence            87521                                         11234678888888743      33457999999


Q ss_pred             CCCCCC
Q psy13204        137 PPWGGP  142 (189)
Q Consensus       137 pp~~~~  142 (189)
                      .||+.+
T Consensus       176 lPYG~~  181 (246)
T PF11599_consen  176 LPYGEM  181 (246)
T ss_dssp             --CCCS
T ss_pred             CCCccc
Confidence            999964

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.30  E-value=2.9e-06  Score=59.39  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=49.9

Q ss_pred             EEEEecCCCChHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204         66 VVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  124 (189)
                      +++|+|||.|.++..+++.+.  +++++|.++.+++.+++++..+++ .++++++..+.+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-~~v~~~~~al~~~   60 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLNAAVGDR   60 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEEeeeeCC
Confidence            489999999999999998854  699999999999999999998887 3688887776553

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG1661|consensus

Probab=98.29  E-value=6.6e-06  Score=60.56  Aligned_cols=84  Identities=15%  Similarity=0.117  Sum_probs=66.2

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhC--------C-CCceEEEeC
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYG--------V-SHKIQFIQG  119 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~--------~-~~~~~~~~~  119 (189)
                      +.+.+...+.+|..+||+|+|+|.++..+++.    |...+|||.-++.++++++|+...-        + ..+..++.+
T Consensus        72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG  151 (237)
T KOG1661|consen   72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG  151 (237)
T ss_pred             HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence            34445555677999999999999999999976    3345899999999999999986543        1 136788899


Q ss_pred             CcccCC-CCCCccEEEEC
Q psy13204        120 DFFALA-PSLQGDVVFLS  136 (189)
Q Consensus       120 d~~~~~-~~~~~D~v~~n  136 (189)
                      |..... +..+||.|.+.
T Consensus       152 Dgr~g~~e~a~YDaIhvG  169 (237)
T KOG1661|consen  152 DGRKGYAEQAPYDAIHVG  169 (237)
T ss_pred             CccccCCccCCcceEEEc
Confidence            988775 55689999984

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.26  E-value=4.8e-06  Score=66.49  Aligned_cols=74  Identities=24%  Similarity=0.368  Sum_probs=52.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHh---------CCCCceEEEeCCcccCC-----CC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY---------GVSHKIQFIQGDFFALA-----PS  127 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~---------~~~~~~~~~~~d~~~~~-----~~  127 (189)
                      ++..|||+|||-|+...-+..+ -..++|+|++..+++.|+++....         .......++.+|.....     +.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            5789999999999988777766 567899999999999999988321         11125678888876432     22


Q ss_pred             --CCccEEEEC
Q psy13204        128 --LQGDVVFLS  136 (189)
Q Consensus       128 --~~~D~v~~n  136 (189)
                        ..||+|-+=
T Consensus       142 ~~~~FDvVScQ  152 (331)
T PF03291_consen  142 RSRKFDVVSCQ  152 (331)
T ss_dssp             TTS-EEEEEEE
T ss_pred             cCCCcceeehH
Confidence              489999884

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.25  E-value=7.1e-06  Score=62.98  Aligned_cols=87  Identities=16%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCC---CCceEEEeCCcccCC--
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGV---SHKIQFIQGDFFALA--  125 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~--  125 (189)
                      +....+...+..++||=+|.|.|+.+.++.+..  .+++.||+++..++.|++.+.....   ..+++++.+|...+.  
T Consensus        66 l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~  145 (246)
T PF01564_consen   66 LVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE  145 (246)
T ss_dssp             HHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT
T ss_pred             HhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh
Confidence            333333344558999999999999999998874  6899999999999999988765322   247999999998876  


Q ss_pred             CCC-CccEEEECCCC
Q psy13204        126 PSL-QGDVVFLSPPW  139 (189)
Q Consensus       126 ~~~-~~D~v~~npp~  139 (189)
                      ... +||+|+.|.+-
T Consensus       146 ~~~~~yDvIi~D~~d  160 (246)
T PF01564_consen  146 TQEEKYDVIIVDLTD  160 (246)
T ss_dssp             SSST-EEEEEEESSS
T ss_pred             ccCCcccEEEEeCCC
Confidence            234 89999998765

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.23  E-value=1.7e-05  Score=59.89  Aligned_cols=78  Identities=19%  Similarity=0.215  Sum_probs=47.7

Q ss_pred             CCEEEEecCCCChHHHHHH--HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC---CCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA--AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS---LQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~D~v~~npp  138 (189)
                      |++|+=+|=+.- .+++++  ....+|+.+|+++..++..++.++..|+  +++....|+.+.+|.   .+||+++.|||
T Consensus        45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~~LP~~~~~~fD~f~TDPP  121 (243)
T PF01861_consen   45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRDPLPEELRGKFDVFFTDPP  121 (243)
T ss_dssp             T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE---
T ss_pred             CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence            889987773332 333333  3467899999999999999999999999  599999999988754   58999999999


Q ss_pred             CCCCcc
Q psy13204        139 WGGPEY  144 (189)
Q Consensus       139 ~~~~~~  144 (189)
                      |...+.
T Consensus       122 yT~~G~  127 (243)
T PF01861_consen  122 YTPEGL  127 (243)
T ss_dssp             SSHHHH
T ss_pred             CCHHHH
Confidence            997443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=98.23  E-value=4.9e-06  Score=62.55  Aligned_cols=54  Identities=22%  Similarity=0.482  Sum_probs=41.3

Q ss_pred             hHHHHHHHHH-hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHH
Q psy13204         50 PEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        50 ~~~~~~~~~~-~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~  103 (189)
                      |..+.+.+.. ...+++.|||++||+|+.+.++.+.+.+.+|+|++++.++.|++
T Consensus       177 P~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            4455555444 44559999999999999999999999999999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=98.22  E-value=4.3e-05  Score=64.58  Aligned_cols=136  Identities=17%  Similarity=0.171  Sum_probs=85.4

Q ss_pred             ChHHHHHHHHHhCCC----CCEEEEecCCCChHHHHHHHh---C---CeEEEEeCCHHHHHHHHHHHHHhCCCC-ceEEE
Q psy13204         49 TPEKVAQHIASRCKA----SDVVIDGFCGCGGNTIQFAAV---C---QKVISIDIDPAKLRLAQHNASVYGVSH-KIQFI  117 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~----~~~vlD~g~G~G~~~~~~~~~---~---~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~  117 (189)
                      +|..+...++..+.+    +..+.|++||+|++.....+.   +   ..++|.|.++.+...++.|+..++... .....
T Consensus       199 Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~  278 (501)
T TIGR00497       199 TPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNII  278 (501)
T ss_pred             CcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcc
Confidence            456677777665442    468999999999998876442   1   358999999999999999988777632 33444


Q ss_pred             eCCcccCC---CCCCccEEEECCCCCCCcccc--------ccccccccC-cCCCCchhHHHHhhh-cC--CceEEEcCCC
Q psy13204        118 QGDFFALA---PSLQGDVVFLSPPWGGPEYAR--------SSFSIDNIF-PEQGGGRRLFQVARG-IS--PNVGYYLPRT  182 (189)
Q Consensus       118 ~~d~~~~~---~~~~~D~v~~npp~~~~~~~~--------~~~~~~~~l-~~~~~g~~~~~~~~~-~~--~~~~~~lp~~  182 (189)
                      .+|.+..+   ....||++++||||.......        ...-+...+ +...+++.++.+... +.  +.....+|..
T Consensus       279 ~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g  358 (501)
T TIGR00497       279 NADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG  358 (501)
T ss_pred             cCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence            55554432   345699999999998643211        011111222 223356655555433 22  4556666765


Q ss_pred             CC
Q psy13204        183 SD  184 (189)
Q Consensus       183 ~~  184 (189)
                      .-
T Consensus       359 vl  360 (501)
T TIGR00497       359 IL  360 (501)
T ss_pred             cc
Confidence            43

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.20  E-value=5.1e-06  Score=62.04  Aligned_cols=79  Identities=15%  Similarity=0.138  Sum_probs=56.6

Q ss_pred             CCEEEEecCCCChHHHHH--HHhCCeEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEeCCccc-CC-----CCCCccEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQF--AAVCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFA-LA-----PSLQGDVVF  134 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~--~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~-~~-----~~~~~D~v~  134 (189)
                      ..++||+|.|.--+=--+  ...|++.+|-|+++.+++.|+.++..+ ++...++.+...-.+ ..     ..+.||+++
T Consensus        79 ~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tl  158 (292)
T COG3129          79 NIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATL  158 (292)
T ss_pred             ceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEe
Confidence            457789987754422222  233889999999999999999999887 665556666543222 22     356899999


Q ss_pred             ECCCCCCC
Q psy13204        135 LSPPWGGP  142 (189)
Q Consensus       135 ~npp~~~~  142 (189)
                      |||||+..
T Consensus       159 CNPPFh~s  166 (292)
T COG3129         159 CNPPFHDS  166 (292)
T ss_pred             cCCCcchh
Confidence            99999974

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.19  E-value=2.4e-06  Score=64.68  Aligned_cols=37  Identities=22%  Similarity=0.195  Sum_probs=33.5

Q ss_pred             CCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHH
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRL  100 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~  100 (189)
                      +.++||+|||+|.++..+++.| .+|+|+|+++.++..
T Consensus        76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        76 NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            7799999999999999999995 479999999987765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.19  E-value=4.7e-06  Score=66.08  Aligned_cols=72  Identities=17%  Similarity=0.078  Sum_probs=56.3

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-CCCccEEEECCCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPWG  140 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~npp~~  140 (189)
                      .++..++|+||++|+++..+.++|.+|++||..+ +-..    +...   .+++....|...+.+ ...+|++++|.-..
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~----L~~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmve~  281 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQS----LMDT---GQVEHLRADGFKFRPPRKNVDWLVCDMVEK  281 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHh----hhCC---CCEEEEeccCcccCCCCCCCCEEEEecccC
Confidence            4588999999999999999999999999999655 2111    1111   478999999888765 66799999986654


Q ss_pred             C
Q psy13204        141 G  141 (189)
Q Consensus       141 ~  141 (189)
                      +
T Consensus       282 P  282 (357)
T PRK11760        282 P  282 (357)
T ss_pred             H
Confidence            4

>PRK10458 DNA cytosine methylase; Provisional

Probab=98.16  E-value=2.8e-05  Score=64.72  Aligned_cols=80  Identities=19%  Similarity=0.150  Sum_probs=59.0

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeE-EEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----------------
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----------------  126 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------------  126 (189)
                      .-+++|++||.|+++..+.+.|.++ .++|+++.+.+..+.|....   ......++|+.+...                
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~  164 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIR  164 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhh
Confidence            3489999999999999999888765 67999999999888875311   122344455544421                


Q ss_pred             --CCCccEEEECCCCCCCcccc
Q psy13204        127 --SLQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       127 --~~~~D~v~~npp~~~~~~~~  146 (189)
                        ...+|+++..|||+..+...
T Consensus       165 ~~~p~~DvL~gGpPCQ~FS~AG  186 (467)
T PRK10458        165 QHIPDHDVLLAGFPCQPFSLAG  186 (467)
T ss_pred             ccCCCCCEEEEcCCCCccchhc
Confidence              12579999999999977655

>PRK13699 putative methylase; Provisional

Probab=98.15  E-value=1.3e-05  Score=60.72  Aligned_cols=59  Identities=19%  Similarity=0.303  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHh-CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Q psy13204         50 PEKVAQHIASR-CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY  108 (189)
Q Consensus        50 ~~~~~~~~~~~-~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  108 (189)
                      |..+.+.+... ..+|+.|||++||+|+.++++.+.|.+.+|+|++++..+.+.+++...
T Consensus       149 P~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        149 PVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             cHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            45566655543 455999999999999999999999999999999999999998887643

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.14  E-value=9.6e-06  Score=68.45  Aligned_cols=77  Identities=13%  Similarity=0.094  Sum_probs=64.6

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---CCCCCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~npp  138 (189)
                      +..++|+|||.|.+.+.+|..  ...++|+|+....+..+...+...++ .|+.+++.|+...   .+..++|.|+++=|
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            678899999999999999988  56789999999999999888888888 5888888887433   36678999999866


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      --+
T Consensus       427 DPW  429 (506)
T PRK01544        427 DPW  429 (506)
T ss_pred             CCC
Confidence            544

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.13  E-value=2.7e-05  Score=57.90  Aligned_cols=82  Identities=18%  Similarity=0.146  Sum_probs=70.1

Q ss_pred             HHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCc
Q psy13204         54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG  130 (189)
Q Consensus        54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  130 (189)
                      ...++..++.+..+.|+||--|.+..++.+.  ...+++.|+++..++.|..++..+++.+.+++.++|.+... .+..+
T Consensus         7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~   86 (226)
T COG2384           7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEI   86 (226)
T ss_pred             HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCc
Confidence            3445566666777999999999999999887  45789999999999999999999999889999999997776 44578


Q ss_pred             cEEEE
Q psy13204        131 DVVFL  135 (189)
Q Consensus       131 D~v~~  135 (189)
                      |+++.
T Consensus        87 d~ivI   91 (226)
T COG2384          87 DVIVI   91 (226)
T ss_pred             CEEEE
Confidence            98887

>KOG4058|consensus

Probab=98.10  E-value=1.3e-05  Score=55.80  Aligned_cols=90  Identities=17%  Similarity=0.251  Sum_probs=69.1

Q ss_pred             ccccChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc
Q psy13204         45 WYSVTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF  121 (189)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~  121 (189)
                      |-..+.+++... +..++.  ....+|+|+|.|...+.+++.| ...+|+|+||..+.+++-.+-+.|+.++..|..-|.
T Consensus        53 YVpAtteQv~nV-LSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl  131 (199)
T KOG4058|consen   53 YVPATTEQVENV-LSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL  131 (199)
T ss_pred             ccCccHHHHHHH-HHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence            334456665544 444443  4689999999999999999998 568999999999999999988899988899999999


Q ss_pred             ccCC-CCCCccEEEE
Q psy13204        122 FALA-PSLQGDVVFL  135 (189)
Q Consensus       122 ~~~~-~~~~~D~v~~  135 (189)
                      .+.. .+..+-+|+.
T Consensus       132 wK~dl~dy~~vviFg  146 (199)
T KOG4058|consen  132 WKVDLRDYRNVVIFG  146 (199)
T ss_pred             hhccccccceEEEee
Confidence            8886 3333334443

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.06  E-value=4.1e-05  Score=56.14  Aligned_cols=69  Identities=20%  Similarity=0.130  Sum_probs=58.8

Q ss_pred             EEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE
Q psy13204         66 VVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  135 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~  135 (189)
                      +++|+|+|.|.-++.++-.  ..+++.+|-+..-+...++-....++ .+++++++.+.+......||+|++
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~~~~fd~v~a  121 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEEPEYRESFDVVTA  121 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHTTTTT-EEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecccccCCCccEEEe
Confidence            8999999999999988765  66899999999999999999999999 589999999999445678999998

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.00  E-value=9.6e-06  Score=64.46  Aligned_cols=83  Identities=19%  Similarity=0.246  Sum_probs=65.8

Q ss_pred             HhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC-----C-CCceEEEeCCcccCC--CCC
Q psy13204         59 SRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG-----V-SHKIQFIQGDFFALA--PSL  128 (189)
Q Consensus        59 ~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~~~~d~~~~~--~~~  128 (189)
                      +..+...+|+=+|.|.|.-..++.+.  ..+++-+|++|+|++.++++.....     + ..+++++..|+.++.  ..+
T Consensus       285 s~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~  364 (508)
T COG4262         285 SSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD  364 (508)
T ss_pred             ccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence            33444679999999999999999886  5689999999999999996654322     1 236899999999997  445


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      .||+||.|-|=-.
T Consensus       365 ~fD~vIVDl~DP~  377 (508)
T COG4262         365 MFDVVIVDLPDPS  377 (508)
T ss_pred             cccEEEEeCCCCC
Confidence            8999999877543

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.98  E-value=3.5e-05  Score=57.62  Aligned_cols=71  Identities=20%  Similarity=0.191  Sum_probs=62.0

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC-ccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ-GDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~D~v~~  135 (189)
                      +.+++|+|+|.|.-++.+|-.  ..+++-+|-...-+...+.-....++ .+++++++.++++..... ||+|++
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEe
Confidence            479999999999999998733  56799999999999999998899999 589999999999875445 999988

>KOG1975|consensus

Probab=97.97  E-value=7.8e-06  Score=63.89  Aligned_cols=82  Identities=23%  Similarity=0.267  Sum_probs=60.3

Q ss_pred             HhCCCCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHh-CC----CCceEEEeCCcccCC-------
Q psy13204         59 SRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVY-GV----SHKIQFIQGDFFALA-------  125 (189)
Q Consensus        59 ~~~~~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~-~~----~~~~~~~~~d~~~~~-------  125 (189)
                      ...++++.++|+|||.|+..+-.-++| ..++|+|+.+-+++.|+.+.+.. +.    ...+.++.+|...-.       
T Consensus       113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~  192 (389)
T KOG1975|consen  113 LYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF  192 (389)
T ss_pred             HHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence            344558899999999999999887775 46899999999999998877532 11    125789999876532       


Q ss_pred             CCCCccEEEECCCCC
Q psy13204        126 PSLQGDVVFLSPPWG  140 (189)
Q Consensus       126 ~~~~~D~v~~npp~~  140 (189)
                      ++.+||+|-+---+|
T Consensus       193 ~dp~fDivScQF~~H  207 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFH  207 (389)
T ss_pred             CCCCcceeeeeeeEe
Confidence            334599987644444

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.97  E-value=4.7e-05  Score=58.14  Aligned_cols=67  Identities=27%  Similarity=0.443  Sum_probs=53.3

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ..+|+|+|+|.|.++..++++  +.+++.+|+ |+.++.+++       .++++++.+|+++..|.  +|++++.--.|
T Consensus       101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~D~~~l~~vLh  169 (241)
T PF00891_consen  101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--ADVYLLRHVLH  169 (241)
T ss_dssp             SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--ESEEEEESSGG
T ss_pred             ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--ccceeeehhhh
Confidence            668999999999999999887  678999999 889888877       36999999999955554  99999843333

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.95  E-value=5.3e-05  Score=59.11  Aligned_cols=74  Identities=19%  Similarity=0.232  Sum_probs=62.8

Q ss_pred             CCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhC--C-CCceEEEeCCcccCCC--CCCccEEEEC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALAP--SLQGDVVFLS  136 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~--~~~~D~v~~n  136 (189)
                      .++||=+|.|.|+.+.++.+..  .+++.||+++..++.+++.+....  . ..+++++.+|..++..  ..+||+|++|
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D  156 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD  156 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence            4699999999999999999985  689999999999999999886543  2 2579999999999872  2379999997


Q ss_pred             C
Q psy13204        137 P  137 (189)
Q Consensus       137 p  137 (189)
                      -
T Consensus       157 ~  157 (282)
T COG0421         157 S  157 (282)
T ss_pred             C
Confidence            3

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.94  E-value=6.6e-05  Score=58.18  Aligned_cols=79  Identities=15%  Similarity=0.153  Sum_probs=63.2

Q ss_pred             CCEEEEecCCCChHHHHHHHhC----CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVC----QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~  135 (189)
                      .-+|+|+.||.|...+.+....    .++...|.++..++..++.++..|+.+-++|.++|+++..    -....++++.
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV  215 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV  215 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence            6689999999999999887652    4688999999999999999999999655699999999864    1234677777


Q ss_pred             CCCCCCC
Q psy13204        136 SPPWGGP  142 (189)
Q Consensus       136 npp~~~~  142 (189)
                      .--|...
T Consensus       216 sGL~ElF  222 (311)
T PF12147_consen  216 SGLYELF  222 (311)
T ss_pred             ecchhhC
Confidence            5444443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG1122|consensus

Probab=97.91  E-value=7.7e-05  Score=60.34  Aligned_cols=82  Identities=21%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEEC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLS  136 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~n  136 (189)
                      ++.+|+|+++-.|+-+.++|..   -..+++.|.+...++..+.|+...|+ .+..+.+.|..+++   -..+||-|++|
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~~fDRVLLD  319 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPGSFDRVLLD  319 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCcccceeeec
Confidence            3899999999999988888765   45789999999999999999999998 57778888887764   12289999999


Q ss_pred             CCCCCCccc
Q psy13204        137 PPWGGPEYA  145 (189)
Q Consensus       137 pp~~~~~~~  145 (189)
                      .||.+.+..
T Consensus       320 APCSGtgvi  328 (460)
T KOG1122|consen  320 APCSGTGVI  328 (460)
T ss_pred             CCCCCCccc
Confidence            999995433

>KOG1227|consensus

Probab=97.82  E-value=3.2e-05  Score=59.91  Aligned_cols=77  Identities=22%  Similarity=0.321  Sum_probs=64.1

Q ss_pred             HhCCCCCEEEEecCCCChHHH-HHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE
Q psy13204         59 SRCKASDVVIDGFCGCGGNTI-QFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  135 (189)
Q Consensus        59 ~~~~~~~~vlD~g~G~G~~~~-~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~  135 (189)
                      .....+..|+|+.+|.|.+++ .+..+|+ .|+++|.||.+++..+.++..++..++..++.+|.....+....|-|.+
T Consensus       190 ~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL  268 (351)
T KOG1227|consen  190 NTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL  268 (351)
T ss_pred             hcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee
Confidence            333348899999999999999 6667755 6899999999999999999999887788889999887767677777666

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.82  E-value=0.00017  Score=55.08  Aligned_cols=82  Identities=16%  Similarity=0.167  Sum_probs=57.0

Q ss_pred             cccccChHHHHHHHHHh-C---C--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Q psy13204         44 SWYSVTPEKVAQHIASR-C---K--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI  117 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~-~---~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  117 (189)
                      +-|-.+.++..+++... .   +  ...++||+|+|.|..+..++..-.+|++.|.|+.|....++    .|.    +++
T Consensus        69 ~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg~----~vl  140 (265)
T PF05219_consen   69 SMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KGF----TVL  140 (265)
T ss_pred             cEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CCC----eEE
Confidence            33444567777766533 1   1  25689999999999999999999999999999999766433    333    333


Q ss_pred             eCCcccCC-CCCCccEEEE
Q psy13204        118 QGDFFALA-PSLQGDVVFL  135 (189)
Q Consensus       118 ~~d~~~~~-~~~~~D~v~~  135 (189)
                      ..+-  +. .+.+||+|.|
T Consensus       141 ~~~~--w~~~~~~fDvIsc  157 (265)
T PF05219_consen  141 DIDD--WQQTDFKFDVISC  157 (265)
T ss_pred             ehhh--hhccCCceEEEee
Confidence            3322  22 3457999987

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.82  E-value=7.1e-05  Score=60.84  Aligned_cols=77  Identities=27%  Similarity=0.399  Sum_probs=60.6

Q ss_pred             CCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCC-ceEEEeCCcccCC--CCCCccEEEECC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALA--PSLQGDVVFLSP  137 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~--~~~~~D~v~~np  137 (189)
                      +-++||..+|+|.-++..+..   ..+|+..|+|+++++..+.|++.+++.. .+++.+.|+...+  ....||+|=.| 
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD-  128 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD-  128 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence            458999999999999999887   3579999999999999999999999976 5899999998876  67889999999 


Q ss_pred             CCCC
Q psy13204        138 PWGG  141 (189)
Q Consensus       138 p~~~  141 (189)
                      ||+-
T Consensus       129 PfGS  132 (377)
T PF02005_consen  129 PFGS  132 (377)
T ss_dssp             -SS-
T ss_pred             CCCC
Confidence            6664

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PHA01634 hypothetical protein

Probab=97.79  E-value=0.00017  Score=49.06  Aligned_cols=69  Identities=9%  Similarity=0.100  Sum_probs=52.6

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEEC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  136 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n  136 (189)
                      +++|+|+|++.|..+++++-+|+ .|+++|.++...+..+++.+.+.+-+......    ++. .-..||+.++|
T Consensus        29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~~Y~~~Di~~iD   99 (156)
T PHA01634         29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNGEYEDVDIFVMD   99 (156)
T ss_pred             CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccccCCCcceEEEE
Confidence            89999999999999999998876 59999999999999999988775432221111    121 22468888885

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.76  E-value=0.00015  Score=55.12  Aligned_cols=83  Identities=22%  Similarity=0.288  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC
Q psy13204         51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL  128 (189)
Q Consensus        51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  128 (189)
                      +.+...+...++...+|+|+|||.=-+++.....  +..++|+|++..+++....-+...+.  +.++...|.....+..
T Consensus        93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~~~~  170 (251)
T PF07091_consen   93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDPPKE  170 (251)
T ss_dssp             HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTS
T ss_pred             HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccCCCC
Confidence            3344444444555889999999999999887655  56899999999999999998888886  6777777877766666


Q ss_pred             CccEEEE
Q psy13204        129 QGDVVFL  135 (189)
Q Consensus       129 ~~D~v~~  135 (189)
                      ..|+.++
T Consensus       171 ~~DlaLl  177 (251)
T PF07091_consen  171 PADLALL  177 (251)
T ss_dssp             EESEEEE
T ss_pred             CcchhhH
Confidence            7888776

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.75  E-value=5.5e-05  Score=55.98  Aligned_cols=98  Identities=13%  Similarity=0.058  Sum_probs=67.2

Q ss_pred             ChHHHHHHHHHhCCCCCE-EEEecCCCChHHHHHHHhCCe--EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204         49 TPEKVAQHIASRCKASDV-VIDGFCGCGGNTIQFAAVCQK--VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA  125 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~-vlD~g~G~G~~~~~~~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  125 (189)
                      +.+.+.+.+.+.++.... |||+|||+|..+.+++++-..  -.--|.++....-.+..+...++.+-..-+..|+.+..
T Consensus        10 Nk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~   89 (204)
T PF06080_consen   10 NKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPP   89 (204)
T ss_pred             CHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCC
Confidence            445677777777777555 999999999999999998544  34688998887777777777766321233444444432


Q ss_pred             ---------CCCCccEEEECCCCCCCcccc
Q psy13204        126 ---------PSLQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       126 ---------~~~~~D~v~~npp~~~~~~~~  146 (189)
                               ....||+|++--..|.+.+..
T Consensus        90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~  119 (204)
T PF06080_consen   90 WPWELPAPLSPESFDAIFCINMLHISPWSA  119 (204)
T ss_pred             CccccccccCCCCcceeeehhHHHhcCHHH
Confidence                     134799999866666554443

The function of this family is unknown.

>PRK00536 speE spermidine synthase; Provisional

Probab=97.70  E-value=0.00056  Score=52.88  Aligned_cols=78  Identities=10%  Similarity=-0.140  Sum_probs=58.5

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh--CCC-CceEEEeCCcccCCCCCCccEEEECC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY--GVS-HKIQFIQGDFFALAPSLQGDVVFLSP  137 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~-~~~~~~~~d~~~~~~~~~~D~v~~np  137 (189)
                      .+..++||=+|.|.|+.+.++.+...+|+-||++++.++.+++.++..  ++. .+++++.. ..+. ..++||+|++|-
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs  147 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQ  147 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcC
Confidence            455899999999999999999998779999999999999999865432  221 35666541 1111 236899999995


Q ss_pred             CCC
Q psy13204        138 PWG  140 (189)
Q Consensus       138 p~~  140 (189)
                      .+.
T Consensus       148 ~~~  150 (262)
T PRK00536        148 EPD  150 (262)
T ss_pred             CCC
Confidence            544

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.66  E-value=3e-05  Score=57.36  Aligned_cols=101  Identities=16%  Similarity=0.138  Sum_probs=54.2

Q ss_pred             HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCc
Q psy13204         52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG  130 (189)
Q Consensus        52 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  130 (189)
                      .+++++.. .+.+..|.|+|||.+.++..+. .+.+|..+|+..                .+-.++.+|+...+ ++.++
T Consensus        62 ~iI~~l~~-~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva----------------~n~~Vtacdia~vPL~~~sv  123 (219)
T PF05148_consen   62 VIIEWLKK-RPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVA----------------PNPRVTACDIANVPLEDESV  123 (219)
T ss_dssp             HHHHHHCT-S-TTS-EEEES-TT-HHHHH---S---EEEEESS-----------------SSTTEEES-TTS-S--TT-E
T ss_pred             HHHHHHHh-cCCCEEEEECCCchHHHHHhcc-cCceEEEeeccC----------------CCCCEEEecCccCcCCCCce
Confidence            34444432 2336789999999999995543 456899999975                13357788987776 77899


Q ss_pred             cEEEECCCCCCCccccccccccccCcCCCCchhHHHHhhhc
Q psy13204        131 DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGI  171 (189)
Q Consensus       131 D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~  171 (189)
                      |+++++...-+..+.+...+..++|+. +|.+.+.|..++.
T Consensus       124 Dv~VfcLSLMGTn~~~fi~EA~RvLK~-~G~L~IAEV~SRf  163 (219)
T PF05148_consen  124 DVAVFCLSLMGTNWPDFIREANRVLKP-GGILKIAEVKSRF  163 (219)
T ss_dssp             EEEEEES---SS-HHHHHHHHHHHEEE-EEEEEEEEEGGG-
T ss_pred             eEEEEEhhhhCCCcHHHHHHHHheecc-CcEEEEEEecccC
Confidence            999998888887777755555556633 1333444444443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.62  E-value=4.1e-05  Score=55.89  Aligned_cols=62  Identities=24%  Similarity=0.322  Sum_probs=43.9

Q ss_pred             CCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---------C--CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------P--SLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~--~~~  129 (189)
                      +.+|+|+||++|+++..+.+++   .+|+|+|+.+.           ... ..+..+++|..+..         .  ...
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence            4899999999999999999987   78999999886           111 24555565554321         2  258


Q ss_pred             ccEEEECC
Q psy13204        130 GDVVFLSP  137 (189)
Q Consensus       130 ~D~v~~np  137 (189)
                      +|+|++|-
T Consensus        92 ~dlv~~D~   99 (181)
T PF01728_consen   92 FDLVLSDM   99 (181)
T ss_dssp             ESEEEE--
T ss_pred             cceecccc
Confidence            99999996

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=0.00017  Score=53.37  Aligned_cols=68  Identities=28%  Similarity=0.248  Sum_probs=51.5

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---------CC
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------PS  127 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~  127 (189)
                      .++++..|+|+||-.|+++..+++..   ..|+|+|+.|-..           + .++.++++|+.+..         ..
T Consensus        42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~-~~V~~iq~d~~~~~~~~~l~~~l~~  109 (205)
T COG0293          42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------I-PGVIFLQGDITDEDTLEKLLEALGG  109 (205)
T ss_pred             eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------C-CCceEEeeeccCccHHHHHHHHcCC
Confidence            34558999999999999999998873   3499999987322           1 36899999988754         23


Q ss_pred             CCccEEEECCCC
Q psy13204        128 LQGDVVFLSPPW  139 (189)
Q Consensus       128 ~~~D~v~~npp~  139 (189)
                      ..+|+|++|+--
T Consensus       110 ~~~DvV~sD~ap  121 (205)
T COG0293         110 APVDVVLSDMAP  121 (205)
T ss_pred             CCcceEEecCCC
Confidence            357999987544

>KOG2361|consensus

Probab=97.58  E-value=6.6e-05  Score=56.54  Aligned_cols=68  Identities=16%  Similarity=0.285  Sum_probs=49.7

Q ss_pred             EEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC-----CCCCCccEEEE
Q psy13204         66 VVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----APSLQGDVVFL  135 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~  135 (189)
                      +++++|||.|.....+.+-    +-.++++|.+|.+++..+++.....  .++...+.|+...     ....++|.+++
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~  150 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL  150 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEE
Confidence            7899999999999999775    3579999999999999988876443  2444444443322     14457887665

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.54  E-value=0.00038  Score=55.64  Aligned_cols=76  Identities=26%  Similarity=0.354  Sum_probs=63.3

Q ss_pred             CCEEEEecCCCChHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC--CCccEEEECCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPPW  139 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~v~~npp~  139 (189)
                      ...|+|..||+|.-++..+.. +. +++.-|+||.+++.+++|++.+.. .+..+++.|+..++..  ..||+|=+| ||
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiD-PF  130 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDID-PF  130 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecC-CC
Confidence            678999999999999999876 44 799999999999999999999944 3677777888777633  689999998 55


Q ss_pred             CC
Q psy13204        140 GG  141 (189)
Q Consensus       140 ~~  141 (189)
                      +-
T Consensus       131 GS  132 (380)
T COG1867         131 GS  132 (380)
T ss_pred             CC
Confidence            53

>KOG2899|consensus

Probab=97.52  E-value=0.00017  Score=54.41  Aligned_cols=43  Identities=23%  Similarity=0.392  Sum_probs=39.2

Q ss_pred             CCEEEEecCCCChHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHHH
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNAS  106 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~~~  106 (189)
                      +..+||+||-+|.+++.+++. + ..++|+||++..++.|+++.+
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r  103 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR  103 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence            789999999999999999997 4 458999999999999999875

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.52  E-value=0.0023  Score=47.96  Aligned_cols=90  Identities=17%  Similarity=0.088  Sum_probs=63.2

Q ss_pred             cccChHHHHHHHHHhCC-----CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Q psy13204         46 YSVTPEKVAQHIASRCK-----ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI  117 (189)
Q Consensus        46 ~~~~~~~~~~~~~~~~~-----~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  117 (189)
                      |.+.+..++..+..-+.     +|.+||-+|+.+|+....++..   .+.|++||.++...+....-++..   .|+-.+
T Consensus        51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPI  127 (229)
T PF01269_consen   51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPI  127 (229)
T ss_dssp             E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEE
T ss_pred             cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---Cceeee
Confidence            44455667777755443     4889999999999999999887   458999999998877666555444   488999


Q ss_pred             eCCcccCC----CCCCccEEEECCC
Q psy13204        118 QGDFFALA----PSLQGDVVFLSPP  138 (189)
Q Consensus       118 ~~d~~~~~----~~~~~D~v~~npp  138 (189)
                      .+|+....    --..+|+|+.|-.
T Consensus       128 l~DAr~P~~Y~~lv~~VDvI~~DVa  152 (229)
T PF01269_consen  128 LEDARHPEKYRMLVEMVDVIFQDVA  152 (229)
T ss_dssp             ES-TTSGGGGTTTS--EEEEEEE-S
T ss_pred             eccCCChHHhhcccccccEEEecCC
Confidence            99988653    1237999999855

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.47  E-value=7.9e-05  Score=53.41  Aligned_cols=69  Identities=16%  Similarity=0.184  Sum_probs=46.9

Q ss_pred             EEEeCCHHHHHHHHHHHHHhC--CCCceEEEeCCcccCC-CCCCccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204         89 ISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus        89 ~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~~~~~-~~~~~~~~l~~  157 (189)
                      +|+|+|++|++.|+++....+  ...+++++++|+.+.+ ++.+||+|++.--.+...... ...++.+++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp   73 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP   73 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence            489999999999987765332  2247899999999886 556899999854333322111 33456666644

>KOG1501|consensus

Probab=97.45  E-value=0.00028  Score=57.53  Aligned_cols=61  Identities=20%  Similarity=0.141  Sum_probs=53.6

Q ss_pred             CEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA  125 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  125 (189)
                      ..|||+|.|+|.++..++++|+ .|+++|.=..|.+.|++-...+|.+++|+++.--+.+..
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~  129 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK  129 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence            3679999999999999999865 699999999999999999999999889998877665543

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.45  E-value=0.00016  Score=56.93  Aligned_cols=77  Identities=23%  Similarity=0.364  Sum_probs=55.7

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----C--CCCccE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----P--SLQGDV  132 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~--~~~~D~  132 (189)
                      .++..++|..-|.|+.+..+.+.  ..+++|+|.++.+++.|++++...  .+++.++++++.++.     .  ...+|.
T Consensus        19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~dg   96 (310)
T PF01795_consen   19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKVDG   96 (310)
T ss_dssp             -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-EEE
T ss_pred             CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCccCE
Confidence            34779999999999999999876  679999999999999998876644  358999999987754     1  237999


Q ss_pred             EEECCCCC
Q psy13204        133 VFLSPPWG  140 (189)
Q Consensus       133 v~~npp~~  140 (189)
                      |++|.=..
T Consensus        97 iL~DLGvS  104 (310)
T PF01795_consen   97 ILFDLGVS  104 (310)
T ss_dssp             EEEE-S--
T ss_pred             EEEccccC
Confidence            99985443

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.43  E-value=0.0014  Score=52.21  Aligned_cols=72  Identities=10%  Similarity=0.061  Sum_probs=52.6

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh------CCeEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCcccC
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFAL  124 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~  124 (189)
                      ....|+..++++..++|+|||+|.-+..+.++      ..+.+++|+|.++++.+..++.....+ -.+.-+++|..+.
T Consensus        66 ~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        66 HSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             HHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            34566677777889999999999976554332      356789999999999999988744332 1445588887664

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.41  E-value=0.0012  Score=51.45  Aligned_cols=54  Identities=20%  Similarity=0.186  Sum_probs=39.2

Q ss_pred             HHHHHHhCCC--CCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHH
Q psy13204         54 AQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASV  107 (189)
Q Consensus        54 ~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~  107 (189)
                      ...+..+++.  +.+|||+|||.|....++...   -.+++++|.|+.+++.++.-+..
T Consensus        22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~   80 (274)
T PF09243_consen   22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA   80 (274)
T ss_pred             HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence            3334444433  679999999999866655543   45689999999999998876543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.41  E-value=0.0016  Score=50.81  Aligned_cols=82  Identities=22%  Similarity=0.399  Sum_probs=64.7

Q ss_pred             HHHHHHhCC--CCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---
Q psy13204         54 AQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---  125 (189)
Q Consensus        54 ~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---  125 (189)
                      ...+.+.+.  ++...+|..-|.|+.+.++....   .+++|+|.++.+++.|++.....+  ++++++++++.+..   
T Consensus        12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l   89 (314)
T COG0275          12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEAL   89 (314)
T ss_pred             HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHH
Confidence            333444443  37889999999999999998873   679999999999999999987766  48999999877654   


Q ss_pred             ---CCCCccEEEECC
Q psy13204        126 ---PSLQGDVVFLSP  137 (189)
Q Consensus       126 ---~~~~~D~v~~np  137 (189)
                         ....+|-|++|.
T Consensus        90 ~~~~i~~vDGiL~DL  104 (314)
T COG0275          90 KELGIGKVDGILLDL  104 (314)
T ss_pred             HhcCCCceeEEEEec
Confidence               224788888874

>KOG3045|consensus

Probab=97.30  E-value=0.00024  Score=54.17  Aligned_cols=87  Identities=21%  Similarity=0.150  Sum_probs=60.6

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~  142 (189)
                      ..+|.|+|||.+.++.   ..-.+|+.+|+.+                .+-+++.+|+.+.+ ++.+.|+++++...-+.
T Consensus       181 ~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt  241 (325)
T KOG3045|consen  181 NIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VNERVIACDMRNVPLEDESVDVAVFCLSLMGT  241 (325)
T ss_pred             ceEEEecccchhhhhh---ccccceeeeeeec----------------CCCceeeccccCCcCccCcccEEEeeHhhhcc
Confidence            6688899999998876   3356788999854                25578899998876 77899999998777776


Q ss_pred             ccccccccccccCcCCCCchhHHHHhhh
Q psy13204        143 EYARSSFSIDNIFPEQGGGRRLFQVARG  170 (189)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~g~~~~~~~~~  170 (189)
                      ...+......++|+. +|.+.+.+..++
T Consensus       242 n~~df~kEa~RiLk~-gG~l~IAEv~SR  268 (325)
T KOG3045|consen  242 NLADFIKEANRILKP-GGLLYIAEVKSR  268 (325)
T ss_pred             cHHHHHHHHHHHhcc-CceEEEEehhhh
Confidence            665544455566643 133344444333

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.21  E-value=0.001  Score=49.64  Aligned_cols=71  Identities=15%  Similarity=0.098  Sum_probs=49.5

Q ss_pred             CCEEEEecCCCChHHHHH-HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC-CCccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQF-AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~  135 (189)
                      ..+++|.|||.|+.+-.+ .....+|-.+|.++..++.|++.+..... .-.++.+.-.+++.|. .+||+|++
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~-~v~~~~~~gLQ~f~P~~~~YDlIW~  128 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP-RVGEFYCVGLQDFTPEEGKYDLIWI  128 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC-CEEEEEES-GGG----TT-EEEEEE
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC-CcceEEecCHhhccCCCCcEeEEEe
Confidence            568999999999999877 44577899999999999999876544221 2467888888888765 68999998

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG2940|consensus

Probab=97.18  E-value=0.00062  Score=51.17  Aligned_cols=77  Identities=14%  Similarity=0.126  Sum_probs=57.8

Q ss_pred             CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~  141 (189)
                      ...++|+|||.|.....+... ..+++-+|.|-.|++.++..- ..++  .+....+|-.... ..+++|+|+.....|+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslHW  149 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLHW  149 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce--EEEEEecchhcccccccchhhhhhhhhhhh
Confidence            678999999999999998766 457899999999998876432 1333  4556667755544 6789999999777766


Q ss_pred             Cc
Q psy13204        142 PE  143 (189)
Q Consensus       142 ~~  143 (189)
                      ..
T Consensus       150 ~N  151 (325)
T KOG2940|consen  150 TN  151 (325)
T ss_pred             hc
Confidence            43

>KOG2198|consensus

Probab=97.09  E-value=0.0024  Score=51.14  Aligned_cols=86  Identities=24%  Similarity=0.322  Sum_probs=64.4

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHhCC------eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--------
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAVCQ------KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--------  125 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~------~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------  125 (189)
                      -++++++|||+|+-.|+-++.+.+...      .|++-|.++..+....+......- .+..+...|+..++        
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~~  230 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDGN  230 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccCc
Confidence            345699999999999999988877633      799999999999888887754433 35566666655443        


Q ss_pred             --CCCCccEEEECCCCCCCcccc
Q psy13204        126 --PSLQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       126 --~~~~~D~v~~npp~~~~~~~~  146 (189)
                        ....||-|++|-||.+-+...
T Consensus       231 ~~~~~~fDrVLvDVPCS~Dgt~r  253 (375)
T KOG2198|consen  231 DKEQLKFDRVLVDVPCSGDGTLR  253 (375)
T ss_pred             hhhhhhcceeEEecccCCCcccc
Confidence              223699999999999864433

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.08  E-value=0.00067  Score=53.18  Aligned_cols=136  Identities=15%  Similarity=0.105  Sum_probs=78.8

Q ss_pred             hhcCCcccCCCcccccCh--HHHHHHHHHhCCCCCEEEEecCCCCh--HHHHH--HHh------CCeEEEEeCCHHHHHH
Q psy13204         33 TLADADNDATESWYSVTP--EKVAQHIASRCKASDVVIDGFCGCGG--NTIQF--AAV------CQKVISIDIDPAKLRL  100 (189)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vlD~g~G~G~--~~~~~--~~~------~~~v~~vD~~~~~~~~  100 (189)
                      .+.+.+.+....||....  +.+.+.+... ...-+|+..||++|-  .++++  ...      ..+|+|.|+|+.+++.
T Consensus        84 ~li~~ltineT~FFRd~~~f~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~  162 (287)
T PRK10611         84 AFINALTTNLTAFFREAHHFPILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEK  162 (287)
T ss_pred             HHHHHhhCCCCCccCCcHHHHHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHH
Confidence            333445555556666543  2222222211 124599999999997  44444  332      2479999999999999


Q ss_pred             HHHHHH------------------H------------hCCCCceEEEeCCcccCC--CCCCccEEEECCCCCCCcccc--
Q psy13204        101 AQHNAS------------------V------------YGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGGPEYAR--  146 (189)
Q Consensus       101 a~~~~~------------------~------------~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~~~~~~--  146 (189)
                      |++-.-                  .            ..+...++|.+.|+.+..  +...||+|+|--.+...+...  
T Consensus       163 Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~  242 (287)
T PRK10611        163 ARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQE  242 (287)
T ss_pred             HHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHH
Confidence            976420                  0            002245788888888743  346899999944443332222  


Q ss_pred             -ccccccccCcCCCCchhHHHHhhhc
Q psy13204        147 -SSFSIDNIFPEQGGGRRLFQVARGI  171 (189)
Q Consensus       147 -~~~~~~~~l~~~~~g~~~~~~~~~~  171 (189)
                       ....+...|++  ||+.++.+...+
T Consensus       243 ~vl~~l~~~L~p--gG~L~lG~sEsl  266 (287)
T PRK10611        243 RILRRFVPLLKP--DGLLFAGHSENF  266 (287)
T ss_pred             HHHHHHHHHhCC--CcEEEEeCcccc
Confidence             22345556644  477665555444

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.98  E-value=0.00022  Score=47.32  Aligned_cols=70  Identities=27%  Similarity=0.299  Sum_probs=26.5

Q ss_pred             EEecCCCChHHHHHHHh---C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCC
Q psy13204         68 IDGFCGCGGNTIQFAAV---C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP  138 (189)
Q Consensus        68 lD~g~G~G~~~~~~~~~---~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp  138 (189)
                      +|+|+..|..+..+++.   .  .+++++|..+. .+.+++.++..++..+++++++++.+..   +..++|++++|-+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD   78 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence            58999999988888764   2  37999999996 4444455555666568999999997765   3468999999853

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.95  E-value=0.00042  Score=52.23  Aligned_cols=72  Identities=18%  Similarity=0.227  Sum_probs=48.0

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCce-EEEeCCcccCCC---CCCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKI-QFIQGDFFALAP---SLQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~---~~~~D~v~~npp  138 (189)
                      +..+||+|+.+|+|+-.+.++|+ +|+|+|..-..+..--++   .   .++ .....|+....+   ....|++++|-.
T Consensus        80 ~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d---~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvS  153 (245)
T COG1189          80 GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---D---PRVIVLERTNVRYLTPEDFTEKPDLIVIDVS  153 (245)
T ss_pred             CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---C---CcEEEEecCChhhCCHHHcccCCCeEEEEee
Confidence            89999999999999999999965 699999876544332111   1   233 333334444331   126788999877


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      |.-
T Consensus       154 FIS  156 (245)
T COG1189         154 FIS  156 (245)
T ss_pred             hhh
Confidence            754

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.92  E-value=0.0044  Score=48.25  Aligned_cols=71  Identities=31%  Similarity=0.327  Sum_probs=44.6

Q ss_pred             CEEEEecCCCC-hHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHH-HhCCCCceEEEeCCcccCC-CCCCccEEEE
Q psy13204         65 DVVIDGFCGCG-GNTIQFAAV---CQKVISIDIDPAKLRLAQHNAS-VYGVSHKIQFIQGDFFALA-PSLQGDVVFL  135 (189)
Q Consensus        65 ~~vlD~g~G~G-~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~  135 (189)
                      .+|+=+|||.= ..++.+++.   +..++++|+++++.+.+++-.. ..++..++.++++|..+.. .-..||+|+.
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l  198 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL  198 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence            59999999954 455555644   4678999999999999988776 5566668999999998775 3357999988

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.80  E-value=0.013  Score=43.34  Aligned_cols=88  Identities=16%  Similarity=0.136  Sum_probs=66.6

Q ss_pred             cccChHHHHHHHHHhCC-----CCCEEEEecCCCChHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEe
Q psy13204         46 YSVTPEKVAQHIASRCK-----ASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  118 (189)
Q Consensus        46 ~~~~~~~~~~~~~~~~~-----~~~~vlD~g~G~G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~  118 (189)
                      |.+.+..++..++.-+.     ++..||=+|+.+|+.....+.- + ..+++||.++...+-...-+...   .|+-.+.
T Consensus        54 Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL  130 (231)
T COG1889          54 WNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPIL  130 (231)
T ss_pred             eCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeee
Confidence            45556677777766554     3899999999999999999886 3 67999999998876665555433   4788889


Q ss_pred             CCcccCC----CCCCccEEEEC
Q psy13204        119 GDFFALA----PSLQGDVVFLS  136 (189)
Q Consensus       119 ~d~~~~~----~~~~~D~v~~n  136 (189)
                      +|+....    --..+|+|+.|
T Consensus       131 ~DA~~P~~Y~~~Ve~VDviy~D  152 (231)
T COG1889         131 EDARKPEKYRHLVEKVDVIYQD  152 (231)
T ss_pred             cccCCcHHhhhhcccccEEEEe
Confidence            9987643    12468999987

>KOG2912|consensus

Probab=96.76  E-value=0.0034  Score=49.38  Aligned_cols=75  Identities=17%  Similarity=0.130  Sum_probs=55.1

Q ss_pred             EEecCCCChHHHHH-H-HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--------CCCCccEEEECC
Q psy13204         68 IDGFCGCGGNTIQF-A-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--------PSLQGDVVFLSP  137 (189)
Q Consensus        68 lD~g~G~G~~~~~~-~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~D~v~~np  137 (189)
                      +|+|.|.-.+--.+ + +.++...+.|++...+..|..|+..+++...+.+++....+..        ++..||.+.+||
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNP  186 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNP  186 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCC
Confidence            57766544432222 2 2377889999999999999999999999877887777554432        334699999999


Q ss_pred             CCCCC
Q psy13204        138 PWGGP  142 (189)
Q Consensus       138 p~~~~  142 (189)
                      ||...
T Consensus       187 PFfe~  191 (419)
T KOG2912|consen  187 PFFEN  191 (419)
T ss_pred             chhhc
Confidence            99865

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.72  E-value=0.0086  Score=44.38  Aligned_cols=106  Identities=14%  Similarity=0.228  Sum_probs=54.5

Q ss_pred             CCEEEEecCCCCh--HHHHH--HHh----C---CeEEEEeCCHHHHHHHHHHH--------------HHh-----C----
Q psy13204         64 SDVVIDGFCGCGG--NTIQF--AAV----C---QKVISIDIDPAKLRLAQHNA--------------SVY-----G----  109 (189)
Q Consensus        64 ~~~vlD~g~G~G~--~~~~~--~~~----~---~~v~~vD~~~~~~~~a~~~~--------------~~~-----~----  109 (189)
                      .-+|+..||++|-  .++++  ...    .   .+++|.|+|+.+++.|++-.              ...     +    
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            4589999999998  34333  331    1   37999999999999986521              000     1    


Q ss_pred             ----CCCceEEEeCCccc-CCCCCCccEEEECCCCCCCcccc---ccccccccCcCCCCchhHHHHhhhc
Q psy13204        110 ----VSHKIQFIQGDFFA-LAPSLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGI  171 (189)
Q Consensus       110 ----~~~~~~~~~~d~~~-~~~~~~~D~v~~npp~~~~~~~~---~~~~~~~~l~~~~~g~~~~~~~~~~  171 (189)
                          +...++|.+.|..+ ..+...||+|+|--.....+...   ....+.+.|.+  ||+.++.....+
T Consensus       112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p--gG~L~lG~sE~l  179 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP--GGYLFLGHSESL  179 (196)
T ss_dssp             E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE--EEEEEE-TT--S
T ss_pred             EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC--CCEEEEecCccC
Confidence                11468899999998 44556899999943333222221   12234455533  476666555444

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG4589|consensus

Probab=96.68  E-value=0.0024  Score=46.52  Aligned_cols=66  Identities=21%  Similarity=0.155  Sum_probs=46.6

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC-CcccC---------CCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-DFFAL---------APS  127 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~---------~~~  127 (189)
                      ++++.+|||+||..|.++..+.+.   ...|.|||+-.-           ... ..++++++ |+.+.         +++
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPP-EGATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCC-CCcccccccccCCHHHHHHHHHhCCC
Confidence            456999999999999999999887   457899998541           111 23455555 44432         266


Q ss_pred             CCccEEEECCC
Q psy13204        128 LQGDVVFLSPP  138 (189)
Q Consensus       128 ~~~D~v~~npp  138 (189)
                      ..+|+|++|.-
T Consensus       135 r~VdvVlSDMa  145 (232)
T KOG4589|consen  135 RPVDVVLSDMA  145 (232)
T ss_pred             CcccEEEeccC
Confidence            78999999843

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.58  E-value=0.015  Score=45.65  Aligned_cols=59  Identities=22%  Similarity=0.385  Sum_probs=48.1

Q ss_pred             hHHHHHHHHH-hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Q psy13204         50 PEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY  108 (189)
Q Consensus        50 ~~~~~~~~~~-~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  108 (189)
                      |..+...... ....+..|+|+++|+|..++.+.+.+...+|+|++++.++.+.++....
T Consensus       208 P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         208 PLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             hHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence            3444444433 3444999999999999999999999999999999999999998887644

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.55  E-value=0.0094  Score=41.60  Aligned_cols=59  Identities=15%  Similarity=0.178  Sum_probs=43.5

Q ss_pred             eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCCCCCCccc
Q psy13204         87 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPPWGGPEYA  145 (189)
Q Consensus        87 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp~~~~~~~  145 (189)
                      +|+|+|+.+++++.+++++...++..++++++.+-....   +...+|+++.|.=|-+-+..
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk   62 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDK   62 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-T
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCC
Confidence            589999999999999999999998778999999876654   33589999999777654433

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.52  E-value=0.0039  Score=48.18  Aligned_cols=77  Identities=18%  Similarity=0.166  Sum_probs=61.5

Q ss_pred             CCEEEEecCCCChHHHHHHH--hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC---CCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS---LQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~D~v~~npp  138 (189)
                      |+.|+=+| -.-..+++++-  +..++..+|+++..+....+.+...|+ +++..+.-|..+.+|.   ..||+++.|||
T Consensus       153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp  230 (354)
T COG1568         153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVFITDPP  230 (354)
T ss_pred             CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCeeecCch
Confidence            66777777 44445555544  356899999999999999999999998 5799999999988754   47999999999


Q ss_pred             CCCC
Q psy13204        139 WGGP  142 (189)
Q Consensus       139 ~~~~  142 (189)
                      +...
T Consensus       231 eTi~  234 (354)
T COG1568         231 ETIK  234 (354)
T ss_pred             hhHH
Confidence            8753

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.49  E-value=0.028  Score=43.67  Aligned_cols=131  Identities=15%  Similarity=0.196  Sum_probs=75.6

Q ss_pred             CCcccCCCcccccCh--HHHHHHHHHhC----C-CCCEEEEecCCCCh--HHHHH--HHhC-------CeEEEEeCCHHH
Q psy13204         36 DADNDATESWYSVTP--EKVAQHIASRC----K-ASDVVIDGFCGCGG--NTIQF--AAVC-------QKVISIDIDPAK   97 (189)
Q Consensus        36 ~~~~~~~~~~~~~~~--~~~~~~~~~~~----~-~~~~vlD~g~G~G~--~~~~~--~~~~-------~~v~~vD~~~~~   97 (189)
                      +.+......||....  +.+.+.+...+    . ..-+|+..||++|-  .++++  .+..       .+++|.|+|..+
T Consensus        62 ~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~  141 (268)
T COG1352          62 DALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSV  141 (268)
T ss_pred             HHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHH
Confidence            445555556666533  23344443322    2 25689999999997  44444  3332       478999999999


Q ss_pred             HHHHHHHH-----HHhCC-----------------------CCceEEEeCCcccCC-CCCCccEEEECCCCCCCcccc--
Q psy13204         98 LRLAQHNA-----SVYGV-----------------------SHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGPEYAR--  146 (189)
Q Consensus        98 ~~~a~~~~-----~~~~~-----------------------~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~~~~~--  146 (189)
                      ++.|+.-.     ...++                       ...|.|.+.|..+-. ....||+|+|   +.-+-|.+  
T Consensus       142 L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC---RNVLIYFd~~  218 (268)
T COG1352         142 LEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC---RNVLIYFDEE  218 (268)
T ss_pred             HHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEE---cceEEeeCHH
Confidence            99986422     10111                       134677777777665 4567999988   22222222  


Q ss_pred             ----ccccccccCcCCCCchhHHHHhhhc
Q psy13204        147 ----SSFSIDNIFPEQGGGRRLFQVARGI  171 (189)
Q Consensus       147 ----~~~~~~~~l~~~~~g~~~~~~~~~~  171 (189)
                          ....+.+.|++  ||+.++-....+
T Consensus       219 ~q~~il~~f~~~L~~--gG~LflG~sE~~  245 (268)
T COG1352         219 TQERILRRFADSLKP--GGLLFLGHSETI  245 (268)
T ss_pred             HHHHHHHHHHHHhCC--CCEEEEccCccc
Confidence                22345556655  577666555554

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.42  E-value=0.002  Score=53.63  Aligned_cols=92  Identities=23%  Similarity=0.253  Sum_probs=51.9

Q ss_pred             EEEEecCCCChHHHHHHHhCCeEEEE---eCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEEC---CC
Q psy13204         66 VVIDGFCGCGGNTIQFAAVCQKVISI---DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS---PP  138 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n---pp  138 (189)
                      .+||+|||+|.|+..+..++-.+..+   |..+..++.|.+    .|+  ...+-..-...++ ++..||+|-+-   -|
T Consensus       120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGv--pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~  193 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGV--PAMIGVLGSQRLPFPSNAFDMVHCSRCLIP  193 (506)
T ss_pred             EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCc--chhhhhhccccccCCccchhhhhccccccc
Confidence            67999999999999999887665443   344444555433    333  1111111122333 77788887552   23


Q ss_pred             CCCCccccccccccccCcCCCCchhHHH
Q psy13204        139 WGGPEYARSSFSIDNIFPEQGGGRRLFQ  166 (189)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~  166 (189)
                      |+..+. ..+.++.++|.+  ||+.+++
T Consensus       194 W~~~~g-~~l~evdRvLRp--GGyfv~S  218 (506)
T PF03141_consen  194 WHPNDG-FLLFEVDRVLRP--GGYFVLS  218 (506)
T ss_pred             chhccc-ceeehhhhhhcc--CceEEec
Confidence            333221 145677777744  4665443

; GO: 0008168 methyltransferase activity

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.35  E-value=0.005  Score=40.72  Aligned_cols=32  Identities=19%  Similarity=0.050  Sum_probs=28.3

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCH
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP   95 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~   95 (189)
                      ...++|+|||+|.+.--+.+.|..-.|+|.-.
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~   90 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARR   90 (112)
T ss_pred             CCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence            45799999999999999999999999999754

; GO: 0008168 methyltransferase activity

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.32  E-value=0.036  Score=37.95  Aligned_cols=73  Identities=26%  Similarity=0.325  Sum_probs=48.4

Q ss_pred             EEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc--CC-CC-CCccEEEECCCC
Q psy13204         67 VIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA--LA-PS-LQGDVVFLSPPW  139 (189)
Q Consensus        67 vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~-~~-~~~D~v~~npp~  139 (189)
                      ++|+|||.|... .+...   +..++++|.++.++..++......+. ..+.+...|...  .. .. ..+|++......
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  129 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL  129 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence            999999999976 33333   24889999999999885544433221 116788888766  22 33 378988555544


Q ss_pred             CC
Q psy13204        140 GG  141 (189)
Q Consensus       140 ~~  141 (189)
                      +.
T Consensus       130 ~~  131 (257)
T COG0500         130 HL  131 (257)
T ss_pred             hc
Confidence            43

>KOG3115|consensus

Probab=96.29  E-value=0.008  Score=44.45  Aligned_cols=63  Identities=14%  Similarity=0.223  Sum_probs=50.1

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC------CCCceEEEeCCcccCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG------VSHKIQFIQGDFFALAP  126 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~~  126 (189)
                      ...+.|+|||=|++.+.++..  ..-++|.||--...++.++++....      ...++.+...+++.+.+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp  131 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP  131 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc
Confidence            456899999999999999988  4457899998888888888776543      22578888888888764

>KOG2360|consensus

Probab=96.27  E-value=0.018  Score=46.43  Aligned_cols=84  Identities=21%  Similarity=0.364  Sum_probs=69.2

Q ss_pred             CCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CC--CCccEEEECC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PS--LQGDVVFLSP  137 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~--~~~D~v~~np  137 (189)
                      |..|+|.+|-.|.-+..++..   -.+++|+|.++...+..+..+...|. ..++..++|+.... +.  ..+-.+++||
T Consensus       214 g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-~~~~~~~~df~~t~~~~~~~~v~~iL~Dp  292 (413)
T KOG2360|consen  214 GSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-SIVESVEGDFLNTATPEKFRDVTYILVDP  292 (413)
T ss_pred             CCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC-CccccccccccCCCCcccccceeEEEeCC
Confidence            889999999999988888664   56799999999999999999999998 46778899988853 21  2466899999


Q ss_pred             CCCCCcccccc
Q psy13204        138 PWGGPEYARSS  148 (189)
Q Consensus       138 p~~~~~~~~~~  148 (189)
                      ++++.+...+.
T Consensus       293 scSgSgm~~r~  303 (413)
T KOG2360|consen  293 SCSGSGMVSRQ  303 (413)
T ss_pred             CCCCCccccce
Confidence            99998876633

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=95.93  E-value=0.016  Score=44.55  Aligned_cols=50  Identities=22%  Similarity=0.341  Sum_probs=35.2

Q ss_pred             HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHH
Q psy13204         52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLA  101 (189)
Q Consensus        52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a  101 (189)
                      .+...+.+.++  ...+++|++||+|..+..+.+.+.+++.-|+++..+...
T Consensus         7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~   58 (260)
T PF02086_consen    7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFW   58 (260)
T ss_dssp             GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHH
Confidence            35666777777  488999999999999999988889999999999765443

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG1709|consensus

Probab=95.85  E-value=0.053  Score=40.63  Aligned_cols=73  Identities=12%  Similarity=0.117  Sum_probs=55.8

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---CCCCCccEEEEC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLS  136 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~n  136 (189)
                      .+|.+||++|-|.|.......++ -..-+-+|-+|+.++..+.+.-...  .++.+..+-.++.   +++..||-|+-|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L~d~~FDGI~yD  176 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTLPDKHFDGIYYD  176 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhccccccCcceeEee
Confidence            45999999999999999888776 3345679999999988776653322  3677777765554   377789999987

>KOG1253|consensus

Probab=95.85  E-value=0.0041  Score=51.62  Aligned_cols=79  Identities=22%  Similarity=0.321  Sum_probs=66.4

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVV  133 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v  133 (189)
                      ..+-+|||..|++|..++..++.   ..+|++.|.++.+++..+.|.+.++..+.++...+|+....     ....||+|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence            34779999999999999999886   45789999999999999999999988767788888876654     33689999


Q ss_pred             EECCCCCC
Q psy13204        134 FLSPPWGG  141 (189)
Q Consensus       134 ~~npp~~~  141 (189)
                      =+| ||+-
T Consensus       188 DLD-PyGs  194 (525)
T KOG1253|consen  188 DLD-PYGS  194 (525)
T ss_pred             ecC-CCCC
Confidence            998 5664

>KOG3987|consensus

Probab=95.83  E-value=0.003  Score=46.82  Aligned_cols=62  Identities=15%  Similarity=0.140  Sum_probs=48.8

Q ss_pred             CCcccccChHHHHHHHHHhCCC----CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHH
Q psy13204         42 TESWYSVTPEKVAQHIASRCKA----SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~----~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~  103 (189)
                      +.+-|-.++++.+++++-.-+.    +.++||+|+|.|-.+..++....+|++.|+|..|....+.
T Consensus        87 rGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k  152 (288)
T KOG3987|consen   87 RGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK  152 (288)
T ss_pred             cCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh
Confidence            4445556778888877543222    5799999999999999998888889999999999987654

>KOG0919|consensus

Probab=95.81  E-value=0.0092  Score=45.27  Aligned_cols=80  Identities=18%  Similarity=0.230  Sum_probs=51.1

Q ss_pred             CEEEEecCCCChHHHHHHHh--CCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         65 DVVIDGFCGCGGNTIQFAAV--CQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      -+|+++.+|.|++.-++..+  .++ |.++|+++-+-+....|...+ +....++.-..+.++ ...++|.++|.|||+.
T Consensus         4 LrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~-L~k~~~I~~lt~kef-d~l~~~m~lMSPpCQP   81 (338)
T KOG0919|consen    4 LRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSN-LVKTRNIQSLTVKEF-DKLQANMLLMSPPCQP   81 (338)
T ss_pred             eehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccc-hhhccccceeeHhhh-hhcccceEeeCCCCCc
Confidence            47899999999988777554  455 678999998887776662111 101111111112222 2246899999999998


Q ss_pred             Ccccc
Q psy13204        142 PEYAR  146 (189)
Q Consensus       142 ~~~~~  146 (189)
                      .....
T Consensus        82 fTRiG   86 (338)
T KOG0919|consen   82 FTRIG   86 (338)
T ss_pred             hhhhc
Confidence            76655

>KOG1269|consensus

Probab=95.76  E-value=0.016  Score=46.95  Aligned_cols=107  Identities=20%  Similarity=0.193  Sum_probs=75.3

Q ss_pred             HhCCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEE-
Q psy13204         59 SRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL-  135 (189)
Q Consensus        59 ~~~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~-  135 (189)
                      ..+.++..++|+|||.|....+.+.- +.+++|++.++-.+..+........+.....++.+|+.+.+ ++..||.+.+ 
T Consensus       106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l  185 (364)
T KOG1269|consen  106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL  185 (364)
T ss_pred             hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence            33444778999999999999999876 68899999999888887777666666556677888888875 7778997654 


Q ss_pred             CCCCCCCccccccccccccCcCCCCch-hHHHH
Q psy13204        136 SPPWGGPEYARSSFSIDNIFPEQGGGR-RLFQV  167 (189)
Q Consensus       136 npp~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~  167 (189)
                      +--++.....+.+..+-+.+++  ||+ .+.+.
T Consensus       186 d~~~~~~~~~~~y~Ei~rv~kp--GG~~i~~e~  216 (364)
T KOG1269|consen  186 EVVCHAPDLEKVYAEIYRVLKP--GGLFIVKEW  216 (364)
T ss_pred             eecccCCcHHHHHHHHhcccCC--CceEEeHHH
Confidence            4555554444444445445643  355 33333

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.56  E-value=0.038  Score=41.14  Aligned_cols=66  Identities=32%  Similarity=0.373  Sum_probs=38.0

Q ss_pred             HHHHhCCCCCEEEEecCCCChHHHHHHHh------CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204         56 HIASRCKASDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        56 ~~~~~~~~~~~vlD~g~G~G~~~~~~~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  124 (189)
                      .+...++ ++.++++|.-.|+.++.+|..      .++|+|+|++........  .....+.++++++++|+.+.
T Consensus        26 eli~~~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~rI~~i~Gds~d~   97 (206)
T PF04989_consen   26 ELIWELK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPRITFIQGDSIDP   97 (206)
T ss_dssp             HHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TTEEEEES-SSST
T ss_pred             HHHHHhC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCceEEEECCCCCH
Confidence            3444455 789999999999999888764      368999999654432211  12233336899999998764

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=95.55  E-value=0.045  Score=42.54  Aligned_cols=37  Identities=16%  Similarity=-0.025  Sum_probs=34.1

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHH
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL  100 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~  100 (189)
                      ..+||=+|||.|+++.++|+.|..+.|.|.|--|+-.
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~   93 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLA   93 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHH
Confidence            5799999999999999999999999999999988644

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG0822|consensus

Probab=95.51  E-value=0.069  Score=45.05  Aligned_cols=82  Identities=15%  Similarity=0.209  Sum_probs=58.2

Q ss_pred             HHHHHHHHhCCC-----CCEEEEecCCCChHHHHHHHh------CCeEEEEeCCHHHHHHHHH-HHHHhCCCCceEEEeC
Q psy13204         52 KVAQHIASRCKA-----SDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQH-NASVYGVSHKIQFIQG  119 (189)
Q Consensus        52 ~~~~~~~~~~~~-----~~~vlD~g~G~G~~~~~~~~~------~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~  119 (189)
                      .+.+.+.++.+.     -.++.=+|+|.|-+.-+..++      --+++++|.||.++-..+. |....+  ++++++.+
T Consensus       351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~--~~Vtii~~  428 (649)
T KOG0822|consen  351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD--NRVTIISS  428 (649)
T ss_pred             HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc--CeeEEEec
Confidence            344555555443     235678999999987666543      2367999999999977654 333333  48999999


Q ss_pred             CcccCCCC-CCccEEEE
Q psy13204        120 DFFALAPS-LQGDVVFL  135 (189)
Q Consensus       120 d~~~~~~~-~~~D~v~~  135 (189)
                      |..++.+. .+.|++++
T Consensus       429 DMR~w~ap~eq~DI~VS  445 (649)
T KOG0822|consen  429 DMRKWNAPREQADIIVS  445 (649)
T ss_pred             cccccCCchhhccchHH
Confidence            99999754 67888876

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=94.91  E-value=0.065  Score=41.52  Aligned_cols=59  Identities=22%  Similarity=0.205  Sum_probs=37.5

Q ss_pred             CEEEEecCCCC--hHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204         65 DVVIDGFCGCG--GNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        65 ~~vlD~g~G~G--~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  124 (189)
                      ..+||+|||--  ...-+.++.   .++|+-+|++|-.+..++..+..+.- ....++++|+.+.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p  133 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDP  133 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-H
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCH
Confidence            58999999943  245555554   78999999999999988877765432 2488999998874

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2651|consensus

Probab=94.80  E-value=0.12  Score=41.92  Aligned_cols=39  Identities=23%  Similarity=0.087  Sum_probs=33.5

Q ss_pred             CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHH
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQ  102 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~  102 (189)
                      -+.|+|+|+|.|.++..++-. |..|.+||-|....+.|+
T Consensus       154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~  193 (476)
T KOG2651|consen  154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ  193 (476)
T ss_pred             CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence            678999999999999999765 889999999987766654

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=94.39  E-value=0.2  Score=34.32  Aligned_cols=77  Identities=21%  Similarity=0.258  Sum_probs=42.3

Q ss_pred             HHHHHHHHhCCCCCEEEEecCCCCh-HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC--C
Q psy13204         52 KVAQHIASRCKASDVVIDGFCGCGG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--L  128 (189)
Q Consensus        52 ~~~~~~~~~~~~~~~vlD~g~G~G~-~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~  128 (189)
                      ++++.+++... ..+++++|-|.=. .+..++++|..|+++|+++.       +++ .    .+.++..|+.+....  .
T Consensus         3 ~~a~~ia~~~~-~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~----g~~~v~DDif~P~l~iY~   69 (127)
T PF03686_consen    3 DFAEYIARLNN-YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-E----GVNFVVDDIFNPNLEIYE   69 (127)
T ss_dssp             HHHHHHHHHS--SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHHT
T ss_pred             hHHHHHHHhCC-CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-c----CcceeeecccCCCHHHhc
Confidence            35666666555 4599999998655 55555677999999999997       222 2    568899998875311  3


Q ss_pred             CccEEEE-CCCCCC
Q psy13204        129 QGDVVFL-SPPWGG  141 (189)
Q Consensus       129 ~~D~v~~-npp~~~  141 (189)
                      ..|+|++ +||-..
T Consensus        70 ~a~lIYSiRPP~El   83 (127)
T PF03686_consen   70 GADLIYSIRPPPEL   83 (127)
T ss_dssp             TEEEEEEES--TTS
T ss_pred             CCcEEEEeCCChHH
Confidence            6788887 666654

; PDB: 2K4M_A.

>PTZ00357 methyltransferase; Provisional

Probab=94.20  E-value=0.22  Score=43.69  Aligned_cols=60  Identities=13%  Similarity=0.076  Sum_probs=41.6

Q ss_pred             EEEEecCCCChHHHHHHHh----C--CeEEEEeCCHHHHHHHHHHHHHhCCC--------CceEEEeCCcccCC
Q psy13204         66 VVIDGFCGCGGNTIQFAAV----C--QKVISIDIDPAKLRLAQHNASVYGVS--------HKIQFIQGDFFALA  125 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~~----~--~~v~~vD~~~~~~~~a~~~~~~~~~~--------~~~~~~~~d~~~~~  125 (189)
                      .|+=+|+|-|-+.-...++    +  .++++||.|+.+......+.......        +.++++..|...+.
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~  776 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA  776 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccc
Confidence            5789999999987766554    2  47899999976554444433221111        35899999999885

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=94.14  E-value=0.064  Score=35.59  Aligned_cols=51  Identities=12%  Similarity=0.099  Sum_probs=27.5

Q ss_pred             CccEEEECCCCCCCccccccccccccCcCCCCch-hHHHHhhhc-CCceEEEcCCC
Q psy13204        129 QGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGR-RLFQVARGI-SPNVGYYLPRT  182 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~-~~~~~~~lp~~  182 (189)
                      .||+|+.||||..............-..   ..+ .+++....+ .+...+.+|..
T Consensus         2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~---dlY~~Fie~~~~ll~G~~~~I~P~~   54 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIKSLSKKKKKKKKKS---DLYILFIEKSLNLLNGYLSFITPNS   54 (106)
T ss_pred             CcCEEEECCCChhhccccchhhcccccC---cHHHHHHHHHHHHhCCeEEEEeChH
Confidence            5899999999997654331111110122   244 444444333 45556677654

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>KOG0821|consensus

Probab=94.03  E-value=0.38  Score=36.31  Aligned_cols=77  Identities=14%  Similarity=0.098  Sum_probs=55.7

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----C--------CC-
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----P--------SL-  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~--------~~-  128 (189)
                      .+.|+++|.|.|+.+..+..++. +...+|+++..+.-.+.-.+....  +..+.++|++.+.     +        +. 
T Consensus        51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~--~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~  128 (326)
T KOG0821|consen   51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPG--KLRIHHGDVLRFKIEKAFSESLKRPWEDDP  128 (326)
T ss_pred             cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCc--ceEEeccccceehHHhhcchhhcCCcccCC
Confidence            78999999999999999988754 678899999887776655554432  6777788877643     1        11 


Q ss_pred             CccEEEECCCCCCC
Q psy13204        129 QGDVVFLSPPWGGP  142 (189)
Q Consensus       129 ~~D~v~~npp~~~~  142 (189)
                      ..=-++.|.||...
T Consensus       129 p~~H~IGNLPf~i~  142 (326)
T KOG0821|consen  129 PNVHIIGNLPFSVS  142 (326)
T ss_pred             CceEEeccCCcccc
Confidence            12247889999543

>KOG3178|consensus

Probab=93.95  E-value=0.17  Score=40.53  Aligned_cols=64  Identities=20%  Similarity=0.340  Sum_probs=50.9

Q ss_pred             CEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  135 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~  135 (189)
                      ...+|+|.|.|..+-.+...-.++-+++.+...+-.+..+.. .    .++.+-+|.++-.|  .-|+|++
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~~P--~~daI~m  242 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQDTP--KGDAIWM  242 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-C----CcceecccccccCC--CcCeEEE
Confidence            688999999999999998877779999999888877666654 3    36788888877643  4468888

>KOG2352|consensus

Probab=93.80  E-value=0.27  Score=41.14  Aligned_cols=80  Identities=16%  Similarity=0.125  Sum_probs=59.3

Q ss_pred             HHHHHHhCCCCC-EEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCc
Q psy13204         54 AQHIASRCKASD-VVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG  130 (189)
Q Consensus        54 ~~~~~~~~~~~~-~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  130 (189)
                      ...+...+.+.. +++-+|||.-.++..+-..|.+ ++.+|+|+-.++.....-. ..- ....+..+|..... ++++|
T Consensus        38 ~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~-~~~~~~~~d~~~l~fedESF  115 (482)
T KOG2352|consen   38 SGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KER-PEMQMVEMDMDQLVFEDESF  115 (482)
T ss_pred             HHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCC-cceEEEEecchhccCCCcce
Confidence            334444555555 8999999999999998888765 8999999998877654432 111 35788889888775 77888


Q ss_pred             cEEEE
Q psy13204        131 DVVFL  135 (189)
Q Consensus       131 D~v~~  135 (189)
                      |+|+.
T Consensus       116 diVId  120 (482)
T KOG2352|consen  116 DIVID  120 (482)
T ss_pred             eEEEe
Confidence            88876

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=93.72  E-value=1  Score=33.73  Aligned_cols=73  Identities=21%  Similarity=0.313  Sum_probs=51.7

Q ss_pred             CCEEEEecCCCCh--HHHHH--HHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcc-cCCC-CCCccEEEE
Q psy13204         64 SDVVIDGFCGCGG--NTIQF--AAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF-ALAP-SLQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~--~~~~~--~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~D~v~~  135 (189)
                      .+.+++.+|+.|.  .++.+  |.+  |.+++.|-.++..+...++.+...++.+.++|+.++.. +..+ -..+|.++.
T Consensus        42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV  121 (218)
T PF07279_consen   42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV  121 (218)
T ss_pred             ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence            5678898776543  33443  322  88999999999888888888887887656799988854 3432 245888888


Q ss_pred             C
Q psy13204        136 S  136 (189)
Q Consensus       136 n  136 (189)
                      |
T Consensus       122 D  122 (218)
T PF07279_consen  122 D  122 (218)
T ss_pred             e
Confidence            6

The function of this family is unknown.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=93.63  E-value=0.42  Score=34.34  Aligned_cols=80  Identities=14%  Similarity=0.111  Sum_probs=47.7

Q ss_pred             HHHHHHHHHhCCCCCEEEEecCCCChHHHHH-HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--C-
Q psy13204         51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQF-AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--P-  126 (189)
Q Consensus        51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~-  126 (189)
                      +.+++.+.+....+.+|+-+||=+-...+.- .....+++..|++...-...          .+ .++.=|.....  + 
T Consensus        13 ~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~----------~~-~F~fyD~~~p~~~~~   81 (162)
T PF10237_consen   13 EFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG----------GD-EFVFYDYNEPEELPE   81 (162)
T ss_pred             HHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC----------Cc-ceEECCCCChhhhhh
Confidence            4455555554445778888887655544444 11366889999997544321          12 34433333221  1 


Q ss_pred             --CCCccEEEECCCCCC
Q psy13204        127 --SLQGDVVFLSPPWGG  141 (189)
Q Consensus       127 --~~~~D~v~~npp~~~  141 (189)
                        ..++|+|++||||-.
T Consensus        82 ~l~~~~d~vv~DPPFl~   98 (162)
T PF10237_consen   82 ELKGKFDVVVIDPPFLS   98 (162)
T ss_pred             hcCCCceEEEECCCCCC
Confidence              248999999999943

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=93.47  E-value=0.06  Score=41.27  Aligned_cols=73  Identities=11%  Similarity=0.276  Sum_probs=44.7

Q ss_pred             EEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEECCCCCCC
Q psy13204         68 IDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        68 lD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~~  142 (189)
                      +....|+-.++..+.+..-+.+.+|+.+.-.+..++++...   .++.+...|..+..     +...=-+|++||||...
T Consensus        62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~  138 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQK  138 (245)
T ss_dssp             --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----ST
T ss_pred             cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCc
Confidence            77889998898888888889999999999999988887643   47899999988743     44456799999999864


Q ss_pred             c
Q psy13204        143 E  143 (189)
Q Consensus       143 ~  143 (189)
                      +
T Consensus       139 ~  139 (245)
T PF04378_consen  139 D  139 (245)
T ss_dssp             T
T ss_pred             h
Confidence            4

; PDB: 2OO3_A.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.21  E-value=0.73  Score=37.29  Aligned_cols=45  Identities=9%  Similarity=-0.007  Sum_probs=35.5

Q ss_pred             CCEEEEecCCCChHHHHHHHh----------CCeEEEEeCCHHHHHHHHHHHHHh
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV----------CQKVISIDIDPAKLRLAQHNASVY  108 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~----------~~~v~~vD~~~~~~~~a~~~~~~~  108 (189)
                      .-.++++|+|.|.+..-+.+.          ..++.-||.|++..+.-+++++..
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            347999999999998887653          347888999999888777776544

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=93.09  E-value=0.23  Score=38.02  Aligned_cols=73  Identities=18%  Similarity=0.362  Sum_probs=59.9

Q ss_pred             EEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEECCCCCCC
Q psy13204         68 IDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        68 lD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~~  142 (189)
                      +...+|+-.++..+.+..-++.+.|+-|+=....+.++.  +. .++++.++|-....     +...=-+|++||||...
T Consensus        93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d-~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~  169 (279)
T COG2961          93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA--GD-RRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELK  169 (279)
T ss_pred             cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC--CC-cceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccc
Confidence            899999999999888888889999999998888888876  22 48899999977643     44456799999999975


Q ss_pred             c
Q psy13204        143 E  143 (189)
Q Consensus       143 ~  143 (189)
                      +
T Consensus       170 ~  170 (279)
T COG2961         170 D  170 (279)
T ss_pred             c
Confidence            4

>PRK13699 putative methylase; Provisional

Probab=93.04  E-value=0.045  Score=41.53  Aligned_cols=26  Identities=27%  Similarity=0.594  Sum_probs=22.3

Q ss_pred             EEEeCCcccCC---CCCCccEEEECCCCC
Q psy13204        115 QFIQGDFFALA---PSLQGDVVFLSPPWG  140 (189)
Q Consensus       115 ~~~~~d~~~~~---~~~~~D~v~~npp~~  140 (189)
                      ++.++|+.+.+   +++++|+|+.||||.
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~   31 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYL   31 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcc
Confidence            67888987754   788999999999997

>PRK11524 putative methyltransferase; Provisional

Probab=93.04  E-value=0.054  Score=42.53  Aligned_cols=29  Identities=31%  Similarity=0.533  Sum_probs=24.2

Q ss_pred             ceEEEeCCcccCC---CCCCccEEEECCCCCC
Q psy13204        113 KIQFIQGDFFALA---PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       113 ~~~~~~~d~~~~~---~~~~~D~v~~npp~~~  141 (189)
                      ..+++++|+.+..   ++.++|+|++||||..
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~   39 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNI   39 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCccc
Confidence            4578999998853   6678999999999974

>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]

Probab=92.98  E-value=0.13  Score=45.34  Aligned_cols=42  Identities=14%  Similarity=0.347  Sum_probs=37.9

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNA  105 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~  105 (189)
                      +..++|.++|-|.+.+++.+.|..|+++|++|.++-..+..+
T Consensus        91 ~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavl  132 (875)
T COG1743          91 GPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVL  132 (875)
T ss_pred             CCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHH
Confidence            778999999999999999999999999999998877666554

>KOG3924|consensus

Probab=92.95  E-value=0.28  Score=39.98  Aligned_cols=89  Identities=22%  Similarity=0.318  Sum_probs=56.7

Q ss_pred             ChHHHHHHHHH-hCCCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHH-------HHhCC-CCceEEE
Q psy13204         49 TPEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNA-------SVYGV-SHKIQFI  117 (189)
Q Consensus        49 ~~~~~~~~~~~-~~~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~-------~~~~~-~~~~~~~  117 (189)
                      .+++++..+.+ .+.+++.+.|+|+|.|......+..+  ..-.|+|+....-+.|..+.       +..|. ...++.+
T Consensus       177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i  256 (419)
T KOG3924|consen  177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI  256 (419)
T ss_pred             hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence            34454444433 23448899999999999888887652  34678888776655554433       23343 2457888


Q ss_pred             eCCcccCC----CCCCccEEEECC
Q psy13204        118 QGDFFALA----PSLQGDVVFLSP  137 (189)
Q Consensus       118 ~~d~~~~~----~~~~~D~v~~np  137 (189)
                      ++++.+..    -....++|++|-
T Consensus       257 ~gsf~~~~~v~eI~~eatvi~vNN  280 (419)
T KOG3924|consen  257 HGSFLDPKRVTEIQTEATVIFVNN  280 (419)
T ss_pred             ccccCCHHHHHHHhhcceEEEEec
Confidence            88877653    223567887763

>KOG2920|consensus

Probab=92.83  E-value=0.098  Score=40.71  Aligned_cols=35  Identities=20%  Similarity=0.095  Sum_probs=31.8

Q ss_pred             CCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHH
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKL   98 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~   98 (189)
                      +++|+|+|||.|..++.+...+ ..+...|.|.+.+
T Consensus       117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL  152 (282)
T ss_pred             CceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence            8999999999999999998887 6788999998877

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.77  E-value=0.36  Score=37.43  Aligned_cols=74  Identities=19%  Similarity=0.110  Sum_probs=56.9

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-CCCccEEEECCC
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPP  138 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~npp  138 (189)
                      ++.++...+|+|+-.|+++-.+.+++-.|++||.-+-+-..     -..   +.++....|-+++-| ....|..+||..
T Consensus       208 rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL-----~dt---g~v~h~r~DGfk~~P~r~~idWmVCDmV  279 (358)
T COG2933         208 RLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSL-----MDT---GQVTHLREDGFKFRPTRSNIDWMVCDMV  279 (358)
T ss_pred             hhcCCceeeecccCCCccchhhhhcceEEEEeccchhhhhh-----hcc---cceeeeeccCcccccCCCCCceEEeehh
Confidence            34558899999999999999999999999999987633221     112   367888889888876 457999999865


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      -..
T Consensus       280 EkP  282 (358)
T COG2933         280 EKP  282 (358)
T ss_pred             cCc
Confidence            544

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=92.33  E-value=0.64  Score=32.69  Aligned_cols=51  Identities=16%  Similarity=0.246  Sum_probs=31.9

Q ss_pred             EecCCCC--hHHHHHH--Hh--CCeEEEEeCCHHHHHHHHHH--HHHhCCCCceEEEeC
Q psy13204         69 DGFCGCG--GNTIQFA--AV--CQKVISIDIDPAKLRLAQHN--ASVYGVSHKIQFIQG  119 (189)
Q Consensus        69 D~g~G~G--~~~~~~~--~~--~~~v~~vD~~~~~~~~a~~~--~~~~~~~~~~~~~~~  119 (189)
                      |+|+..|  .....+.  ..  +.+++++|.+|..++..+.+  +..+.....+++...
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~   59 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPY   59 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEe
Confidence            8999999  6656553  22  67899999999999999999  666543223444443

; PDB: 2PY6_A.

>KOG1201|consensus

Probab=92.10  E-value=1  Score=35.46  Aligned_cols=71  Identities=15%  Similarity=0.119  Sum_probs=53.8

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      |+.||=-|.|+|-   ++.++|++|+++...|++++......+..+..|   .+....+|..+..           +...
T Consensus        38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~G~  114 (300)
T KOG1201|consen   38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEVGD  114 (300)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            7888888888776   777888889999999999998877777776554   5666777766542           2347


Q ss_pred             ccEEEECC
Q psy13204        130 GDVVFLSP  137 (189)
Q Consensus       130 ~D~v~~np  137 (189)
                      +|+++.|.
T Consensus       115 V~ILVNNA  122 (300)
T KOG1201|consen  115 VDILVNNA  122 (300)
T ss_pred             ceEEEecc
Confidence            88888873

>KOG1596|consensus

Probab=91.83  E-value=0.56  Score=35.91  Aligned_cols=89  Identities=18%  Similarity=0.033  Sum_probs=58.9

Q ss_pred             ccChHHHHHHHHH-----hCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEe
Q psy13204         47 SVTPEKVAQHIAS-----RCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  118 (189)
Q Consensus        47 ~~~~~~~~~~~~~-----~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~  118 (189)
                      .+.+..++.-++-     .++++..||=+|+++|......+..   ..-|+++|.++.+=+.+..-++..   .|+-.+.
T Consensus       135 nPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIi  211 (317)
T KOG1596|consen  135 NPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPII  211 (317)
T ss_pred             ChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeee
Confidence            3333445555433     2355999999999999999888876   346899999986654433222221   4777777


Q ss_pred             CCcccCC----CCCCccEEEECCC
Q psy13204        119 GDFFALA----PSLQGDVVFLSPP  138 (189)
Q Consensus       119 ~d~~~~~----~~~~~D~v~~npp  138 (189)
                      .|+....    .-.-+|+||+|-+
T Consensus       212 EDArhP~KYRmlVgmVDvIFaDva  235 (317)
T KOG1596|consen  212 EDARHPAKYRMLVGMVDVIFADVA  235 (317)
T ss_pred             ccCCCchheeeeeeeEEEEeccCC
Confidence            7876543    1236899999854

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.73  E-value=0.67  Score=30.76  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=40.1

Q ss_pred             CCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEEC
Q psy13204         72 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLS  136 (189)
Q Consensus        72 ~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~n  136 (189)
                      ||.|.++..+++.    +..++.+|.+++.++.++..        ...++.+|..+..     .-.+.+.+++.
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEc
Confidence            6788888888764    44899999999988776433        3578999988753     22467777773

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=91.70  E-value=0.42  Score=36.78  Aligned_cols=43  Identities=12%  Similarity=0.020  Sum_probs=33.2

Q ss_pred             CEEEEecCCCChHHHHHHHh----------CCeEEEEeCCHHHHHHHHHHHHH
Q psy13204         65 DVVIDGFCGCGGNTIQFAAV----------CQKVISIDIDPAKLRLAQHNASV  107 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~----------~~~v~~vD~~~~~~~~a~~~~~~  107 (189)
                      -.|+|+|+|+|.++..+.+.          ..+++-||.||.+.+.-++.+..
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            58999999999999888764          13788999999888777777644

; PDB: 4F3N_A 1ZKD_B.

>KOG2793|consensus

Probab=91.15  E-value=1.7  Score=33.43  Aligned_cols=77  Identities=12%  Similarity=-0.006  Sum_probs=44.2

Q ss_pred             CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHH-----HHhCCCCceEEEeCCcccCC----CCCC-ccE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNA-----SVYGVSHKIQFIQGDFFALA----PSLQ-GDV  132 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~-----~~~~~~~~~~~~~~d~~~~~----~~~~-~D~  132 (189)
                      ...||++|+|+|--++.++.. +.++.--|.. ..+...+.+.     ..+++..++.+...+.....    .... +|+
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            457999999999988888885 6777666654 3444433332     22333224444444433332    1123 788


Q ss_pred             EEE-CCCCCC
Q psy13204        133 VFL-SPPWGG  141 (189)
Q Consensus       133 v~~-npp~~~  141 (189)
                      |++ |.-|..
T Consensus       166 ilasDvvy~~  175 (248)
T KOG2793|consen  166 ILASDVVYEE  175 (248)
T ss_pred             EEEeeeeecC
Confidence            776 444443

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=91.10  E-value=0.55  Score=34.68  Aligned_cols=62  Identities=29%  Similarity=0.353  Sum_probs=42.0

Q ss_pred             HHHHhCCCCCEEEEecCCCChHHHHHHHh----C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204         56 HIASRCKASDVVIDGFCGCGGNTIQFAAV----C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        56 ~~~~~~~~~~~vlD~g~G~G~~~~~~~~~----~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  124 (189)
                      .+...++ +..|+++|+--|+.++++|..    |  .+|+++|++-..+..+-..     . .++.+++++..+.
T Consensus        63 ellw~~~-P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dp  130 (237)
T COG3510          63 ELLWELQ-PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDP  130 (237)
T ss_pred             HHHHhcC-CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCH
Confidence            3444444 789999999999999888764    5  6899999876554332221     1 3667777766553

>PRK06194 hypothetical protein; Provisional

Probab=90.96  E-value=2.5  Score=32.68  Aligned_cols=75  Identities=17%  Similarity=0.164  Sum_probs=49.3

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +.++| +..|+|+++..+++    .|++|+.+|.+++.++.........+.  ++.++.+|+.+..           ...
T Consensus         6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA--EVLGVRTDVSDAAQVEALADAALERFG   82 (287)
T ss_pred             CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            45666 55566776666654    488999999988776655554443332  6788889987642           112


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.+.-...
T Consensus        83 ~id~vi~~Ag~~~   95 (287)
T PRK06194         83 AVHLLFNNAGVGA   95 (287)
T ss_pred             CCCEEEECCCCCC
Confidence            5799999875543

>KOG2798|consensus

Probab=89.81  E-value=0.93  Score=36.06  Aligned_cols=37  Identities=14%  Similarity=-0.015  Sum_probs=32.7

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHH
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL  100 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~  100 (189)
                      ...+|=+|||.|+++..++..|.++-|-|.|--|+-.
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~  187 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLIC  187 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHH
Confidence            5689999999999999999999999999988777633

>KOG1099|consensus

Probab=89.76  E-value=0.31  Score=37.01  Aligned_cols=61  Identities=18%  Similarity=0.297  Sum_probs=45.1

Q ss_pred             CCEEEEecCCCChHHHHHHHh--------CC---eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--------CQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--------~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------  125 (189)
                      -.+|+|+|+..|.++..+++.        +.   .+++||+.+- .          .+ ..+.-+++|+....       
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-a----------PI-~GV~qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-A----------PI-EGVIQLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-C----------cc-CceEEeecccCCHhHHHHHHH
Confidence            458999999999999999886        12   3899999762 2          12 35677788876643       


Q ss_pred             --CCCCccEEEEC
Q psy13204        126 --PSLQGDVVFLS  136 (189)
Q Consensus       126 --~~~~~D~v~~n  136 (189)
                        ..+..|+|++|
T Consensus       110 hfggekAdlVvcD  122 (294)
T KOG1099|consen  110 HFGGEKADLVVCD  122 (294)
T ss_pred             HhCCCCccEEEeC
Confidence              34588999997

>KOG2352|consensus

Probab=89.71  E-value=0.15  Score=42.66  Aligned_cols=72  Identities=15%  Similarity=0.164  Sum_probs=51.4

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--------CCCCccEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--------PSLQGDVV  133 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~D~v  133 (189)
                      +..++=+|-|.|.+..++...  ..+++++|++|.+++.|+.+.....- .+..+.-.|..++.        .+..||++
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl  374 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDVL  374 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence            566778888889988888655  46899999999999999988754432 13344444544433        33479999


Q ss_pred             EEC
Q psy13204        134 FLS  136 (189)
Q Consensus       134 ~~n  136 (189)
                      +.|
T Consensus       375 ~~d  377 (482)
T KOG2352|consen  375 MVD  377 (482)
T ss_pred             EEE
Confidence            886

>PRK05854 short chain dehydrogenase; Provisional

Probab=89.52  E-value=4.6  Score=31.96  Aligned_cols=75  Identities=15%  Similarity=-0.017  Sum_probs=48.5

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|+ +|+++.++++    .|++|+.+..+++..+.+.+.+....-..++.++..|+.+..           ...
T Consensus        14 gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         14 GKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            566665554 4555555544    489999999988777666555543321126788888887643           124


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.|.-.
T Consensus        93 ~iD~li~nAG~  103 (313)
T PRK05854         93 PIHLLINNAGV  103 (313)
T ss_pred             CccEEEECCcc
Confidence            68999988644

>PRK05867 short chain dehydrogenase; Provisional

Probab=88.99  E-value=3.9  Score=30.97  Aligned_cols=74  Identities=11%  Similarity=-0.078  Sum_probs=49.1

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|++ |+++..++    +.|.+|+.++.+++.++.....+...+  .++.++.+|..+..           ...
T Consensus         9 ~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867          9 GKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            6677766654 44444444    458999999999887776665555444  26777888876542           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        86 ~id~lv~~ag~~   97 (253)
T PRK05867         86 GIDIAVCNAGII   97 (253)
T ss_pred             CCCEEEECCCCC
Confidence            689999987544

>KOG2782|consensus

Probab=88.96  E-value=0.33  Score=36.55  Aligned_cols=89  Identities=16%  Similarity=0.228  Sum_probs=58.1

Q ss_pred             HHHHHHhCCC--CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----
Q psy13204         54 AQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----  125 (189)
Q Consensus        54 ~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----  125 (189)
                      .......+++  +..++|..-|.|+.+..+.+.  ..++++.|.+|-+.+.|....... ....+..+.+.+....    
T Consensus        32 ~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l~~  110 (303)
T KOG2782|consen   32 LDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSLIA  110 (303)
T ss_pred             hhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHHHH
Confidence            3444455555  889999999999999999887  456889999999998887665311 1012222233222211    


Q ss_pred             ----CCCCccEEEECCCCCCCc
Q psy13204        126 ----PSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       126 ----~~~~~D~v~~npp~~~~~  143 (189)
                          ....+|-+++|.-+.-++
T Consensus       111 ~~gl~~~~vDGiLmDlGcSSMQ  132 (303)
T KOG2782|consen  111 DTGLLDVGVDGILMDLGCSSMQ  132 (303)
T ss_pred             HhCCCcCCcceEEeecCccccc
Confidence                345788888886666544

>PRK07478 short chain dehydrogenase; Provisional

Probab=88.91  E-value=4.8  Score=30.44  Aligned_cols=73  Identities=19%  Similarity=0.009  Sum_probs=48.3

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++ +..|+|+++..+++    .|++|+.++.+++..+.+...+...+.  ++.++.+|..+..           ...
T Consensus         6 ~k~~l-ItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T PRK07478          6 GKVAI-ITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRDEAYAKALVALAVERFG   82 (254)
T ss_pred             CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            45566 44455665555544    489999999998877766665554442  6778888876642           123


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.|.-.
T Consensus        83 ~id~li~~ag~   93 (254)
T PRK07478         83 GLDIAFNNAGT   93 (254)
T ss_pred             CCCEEEECCCC
Confidence            68999988754

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=88.69  E-value=1  Score=33.80  Aligned_cols=73  Identities=16%  Similarity=0.101  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHhCCC------CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204         50 PEKVAQHIASRCKA------SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  123 (189)
Q Consensus        50 ~~~~~~~~~~~~~~------~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  123 (189)
                      ...+.+++.+....      .-++||+||=+....+.... -..|+.||+++                ..-.+.+.|+++
T Consensus        32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~-~fdvt~IDLns----------------~~~~I~qqDFm~   94 (219)
T PF11968_consen   32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG-WFDVTRIDLNS----------------QHPGILQQDFME   94 (219)
T ss_pred             hHHHHHHhhhhccccccccccceEEeecccCCCCcccccC-ceeeEEeecCC----------------CCCCceeecccc
Confidence            34556666554433      24899999987765544322 23599999987                134667888888


Q ss_pred             CC----CCCCccEEEECCCC
Q psy13204        124 LA----PSLQGDVVFLSPPW  139 (189)
Q Consensus       124 ~~----~~~~~D~v~~npp~  139 (189)
                      .+    +.+.||+|.+....
T Consensus        95 rplp~~~~e~FdvIs~SLVL  114 (219)
T PF11968_consen   95 RPLPKNESEKFDVISLSLVL  114 (219)
T ss_pred             CCCCCCcccceeEEEEEEEE
Confidence            64    45689999885443

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=88.55  E-value=5.9  Score=29.66  Aligned_cols=75  Identities=17%  Similarity=-0.009  Sum_probs=48.5

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|..+..+++    +|++|++++.++.....+...+...+  .++.++.+|..+..           ...
T Consensus         6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (251)
T PRK12826          6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDFG   82 (251)
T ss_pred             CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            45676444 56666665544    48899999999876655555444333  25788888887642           112


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      .+|+++.++....
T Consensus        83 ~~d~vi~~ag~~~   95 (251)
T PRK12826         83 RLDILVANAGIFP   95 (251)
T ss_pred             CCCEEEECCCCCC
Confidence            6899998875543

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=88.52  E-value=4.9  Score=30.41  Aligned_cols=74  Identities=11%  Similarity=-0.017  Sum_probs=49.5

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++ +..|+|+++..+++    .|++|+.++.+++..+.+.+.+...+  .++.++.+|+.+..           ...
T Consensus         7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   83 (262)
T PRK13394          7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFG   83 (262)
T ss_pred             CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            45566 56666776666654    48899999999977766665554443  26778888887643           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.+.-..
T Consensus        84 ~~d~vi~~ag~~   95 (262)
T PRK13394         84 SVDILVSNAGIQ   95 (262)
T ss_pred             CCCEEEECCccC
Confidence            479998876543

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=88.51  E-value=5.9  Score=29.97  Aligned_cols=74  Identities=18%  Similarity=0.053  Sum_probs=50.5

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.++...+.....+...+.  ++.++..|..+..           ...
T Consensus        10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   86 (255)
T PRK07523         10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEAEIG   86 (255)
T ss_pred             CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            56676555 56777777655    388999999998877666655554443  5778888877632           123


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.+.-..
T Consensus        87 ~~d~li~~ag~~   98 (255)
T PRK07523         87 PIDILVNNAGMQ   98 (255)
T ss_pred             CCCEEEECCCCC
Confidence            579999887554

>PRK07890 short chain dehydrogenase; Provisional

Probab=88.42  E-value=5.5  Score=30.12  Aligned_cols=73  Identities=12%  Similarity=-0.011  Sum_probs=47.5

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++ +..|+|+++..+++    .|++|+.++.++...+.+.......+  .++.++..|..+..           .-.
T Consensus         5 ~k~vl-ItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          5 GKVVV-VSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG   81 (258)
T ss_pred             CCEEE-EECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            45666 44456666665544    48999999999877666555554333  26788888876532           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.+.-.
T Consensus        82 ~~d~vi~~ag~   92 (258)
T PRK07890         82 RVDALVNNAFR   92 (258)
T ss_pred             CccEEEECCcc
Confidence            67999988643

>KOG1098|consensus

Probab=88.13  E-value=0.5  Score=40.84  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=30.8

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCH
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDP   95 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~   95 (189)
                      .+.++..|||+||..|++...+++.   +.-|+|+|+-|
T Consensus        41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            4566889999999999999999886   66789999876

>PRK07063 short chain dehydrogenase; Provisional

Probab=88.12  E-value=6.1  Score=29.98  Aligned_cols=75  Identities=16%  Similarity=0.014  Sum_probs=48.8

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|++ |+++..++    +.|++|+.++.+++..+...+.+.......++.++.+|..+..           ...
T Consensus         7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   85 (260)
T PRK07063          7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG   85 (260)
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5677766654 55555544    4589999999998877766665554212236778888876642           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      .+|+++.|.-.
T Consensus        86 ~id~li~~ag~   96 (260)
T PRK07063         86 PLDVLVNNAGI   96 (260)
T ss_pred             CCcEEEECCCc
Confidence            68999987643

>PRK06197 short chain dehydrogenase; Provisional

Probab=88.08  E-value=7.2  Score=30.58  Aligned_cols=75  Identities=15%  Similarity=0.021  Sum_probs=48.3

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++ +..|+|+++..+++    .|.+|+.+..+++..+.+.+.+.......++.++..|+.+..           ...
T Consensus        16 ~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~   94 (306)
T PRK06197         16 GRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP   94 (306)
T ss_pred             CCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence            56666 44456776666654    488999999888776655554433211136778888887643           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      .+|+++.|.-.
T Consensus        95 ~iD~li~nAg~  105 (306)
T PRK06197         95 RIDLLINNAGV  105 (306)
T ss_pred             CCCEEEECCcc
Confidence            58999988643

>PRK05876 short chain dehydrogenase; Provisional

Probab=88.05  E-value=5.9  Score=30.67  Aligned_cols=74  Identities=18%  Similarity=0.065  Sum_probs=48.1

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|+ +|+++..+++    .|++|+.++.+++.++...+.+...+.  ++.++..|+.+..           ...
T Consensus         6 ~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          6 GRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            556665554 4555555544    489999999998777665555543333  5778888887643           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        83 ~id~li~nAg~~   94 (275)
T PRK05876         83 HVDVVFSNAGIV   94 (275)
T ss_pred             CCCEEEECCCcC
Confidence            579999987654

>KOG0024|consensus

Probab=87.85  E-value=2.1  Score=34.30  Aligned_cols=43  Identities=26%  Similarity=0.161  Sum_probs=35.0

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-C-CeEEEEeCCHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-C-QKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~  103 (189)
                      .+.|.+||=+|+|. |..+...|++ | .+|+.+|+++..++.|++
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            44599999999995 6666666776 4 579999999999999877

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=87.68  E-value=1.8  Score=34.28  Aligned_cols=45  Identities=11%  Similarity=0.134  Sum_probs=38.0

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNA  105 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~  105 (189)
                      +..+.+|+-+|+|...+...+++.-.+|.+||+|+.-+..-+-++
T Consensus        61 ~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkl  105 (414)
T COG5379          61 LGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKL  105 (414)
T ss_pred             cCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHH
Confidence            455889999999999899999999999999999998776655444

>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=87.59  E-value=0.67  Score=36.22  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=26.5

Q ss_pred             ceEEEeCCcccCCC-CCCc-cEEEECCCCCCCccc
Q psy13204        113 KIQFIQGDFFALAP-SLQG-DVVFLSPPWGGPEYA  145 (189)
Q Consensus       113 ~~~~~~~d~~~~~~-~~~~-D~v~~npp~~~~~~~  145 (189)
                      ++++.++|..+... ..+- |+|++||||.+....
T Consensus       156 ~~~i~~~df~~v~~~a~~~~dfvY~DPPY~~~s~t  190 (274)
T COG0338         156 NATIENGDFEEVLADADSGDDFVYCDPPYLPLSAT  190 (274)
T ss_pred             cCeEEcCCHHHHHhhccCCCcEEEeCCCCCccccc
Confidence            68999999998873 3445 899999999986544

>PRK06172 short chain dehydrogenase; Provisional

Probab=87.56  E-value=6.4  Score=29.69  Aligned_cols=73  Identities=19%  Similarity=0.009  Sum_probs=48.5

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|+ +|+++..++    +.|++|+.++.+++..+.+.+.+...+  .++.++.+|+.+..           ...
T Consensus         7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g   83 (253)
T PRK06172          7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYG   83 (253)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            566766665 455555544    458899999999887766655554443  36788888887642           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      .+|+++.+.-.
T Consensus        84 ~id~li~~ag~   94 (253)
T PRK06172         84 RLDYAFNNAGI   94 (253)
T ss_pred             CCCEEEECCCC
Confidence            57999988654

>KOG1331|consensus

Probab=87.56  E-value=0.34  Score=37.84  Aligned_cols=75  Identities=16%  Similarity=0.020  Sum_probs=52.9

Q ss_pred             HhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCce-EEEeCCcccCC-CCCCccEEEEC
Q psy13204         59 SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKI-QFIQGDFFALA-PSLQGDVVFLS  136 (189)
Q Consensus        59 ~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~-~~~~~D~v~~n  136 (189)
                      .....+..++|.|||.|-....-  -...++|.|++...+..++..        +. ....+|+...+ +..+||.++.=
T Consensus        41 ~~~~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l~~p~~~~s~d~~lsi  110 (293)
T KOG1331|consen   41 DSQPTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADALKLPFREESFDAALSI  110 (293)
T ss_pred             hccCCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC--------CCceeehhhhhcCCCCCCccccchhh
Confidence            34455889999999999755321  134688999999888776432        23 67888998887 66789988775


Q ss_pred             CCCCCCc
Q psy13204        137 PPWGGPE  143 (189)
Q Consensus       137 pp~~~~~  143 (189)
                      ..-++..
T Consensus       111 avihhls  117 (293)
T KOG1331|consen  111 AVIHHLS  117 (293)
T ss_pred             hhhhhhh
Confidence            5555543

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=87.45  E-value=2.7  Score=34.51  Aligned_cols=46  Identities=15%  Similarity=0.125  Sum_probs=36.5

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNA  105 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~  105 (189)
                      .+.++++|+-|++|.....-.+.+.-.+|++||+||.-....+-+.
T Consensus        32 ~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   32 NIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             CCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence            4666899999998877777777777789999999998776665443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=87.31  E-value=3.5  Score=27.83  Aligned_cols=70  Identities=20%  Similarity=0.166  Sum_probs=45.8

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCCh-HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--CCC
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQ  129 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~-~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~  129 (189)
                      ++..++.... ..+|+++|.|-=. .+-.++++|..++++|+++.       +++ .    .+++...|..+.-.  -..
T Consensus         4 ~a~~iAre~~-~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-~----g~~~v~DDitnP~~~iY~~   70 (129)
T COG1255           4 VAEYIARENA-RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-E----GLRFVVDDITNPNISIYEG   70 (129)
T ss_pred             HHHHHHHHhc-CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-c----cceEEEccCCCccHHHhhC
Confidence            3444554444 4489999887544 34455666999999999986       222 2    56889999877531  124


Q ss_pred             ccEEEE
Q psy13204        130 GDVVFL  135 (189)
Q Consensus       130 ~D~v~~  135 (189)
                      .|+|++
T Consensus        71 A~lIYS   76 (129)
T COG1255          71 ADLIYS   76 (129)
T ss_pred             ccceee
Confidence            677776

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=87.23  E-value=7.6  Score=29.35  Aligned_cols=74  Identities=14%  Similarity=0.008  Sum_probs=49.0

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..++    +.|++|+.++.+++.++.........+.  ++.++.+|..+..           ...
T Consensus        11 ~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~   87 (256)
T PRK06124         11 GQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDAEHG   87 (256)
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            66777666 4555555554    4589999999998777665555544443  5778888876532           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .+|+++.+.-..
T Consensus        88 ~id~vi~~ag~~   99 (256)
T PRK06124         88 RLDILVNNVGAR   99 (256)
T ss_pred             CCCEEEECCCCC
Confidence            578999886543

>PRK08339 short chain dehydrogenase; Provisional

Probab=87.13  E-value=8.2  Score=29.56  Aligned_cols=73  Identities=15%  Similarity=0.173  Sum_probs=46.3

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----------CCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~  129 (189)
                      +++++=.|++ |+++..+    ++.|++|+.++.+++..+.+.+......- .++.++.+|+.+..          ....
T Consensus         8 ~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          8 GKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESN-VDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            5666655544 4444444    44599999999998877666555433211 26778888877643          1135


Q ss_pred             ccEEEECCC
Q psy13204        130 GDVVFLSPP  138 (189)
Q Consensus       130 ~D~v~~npp  138 (189)
                      .|+++.|.-
T Consensus        86 iD~lv~nag   94 (263)
T PRK08339         86 PDIFFFSTG   94 (263)
T ss_pred             CcEEEECCC
Confidence            899888753

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=86.99  E-value=2.4  Score=35.30  Aligned_cols=67  Identities=15%  Similarity=0.031  Sum_probs=43.8

Q ss_pred             CCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVF  134 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~  134 (189)
                      ..+++=+|+  |.++..+++.    +..++.+|.+++.++.+++..      ..+.++.+|..+..     .-..+|.++
T Consensus       231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~vi  302 (453)
T PRK09496        231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAFI  302 (453)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence            456655555  6666665543    789999999999887765542      25678888876542     223577777


Q ss_pred             ECCC
Q psy13204        135 LSPP  138 (189)
Q Consensus       135 ~npp  138 (189)
                      +-.+
T Consensus       303 ~~~~  306 (453)
T PRK09496        303 ALTN  306 (453)
T ss_pred             ECCC
Confidence            6444

>PRK07102 short chain dehydrogenase; Provisional

Probab=86.77  E-value=5.2  Score=30.03  Aligned_cols=72  Identities=11%  Similarity=0.026  Sum_probs=46.5

Q ss_pred             EEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--------CCCccEE
Q psy13204         66 VVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--------SLQGDVV  133 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~D~v  133 (189)
                      +++=.| |+|+++..+++    .|.+|++++.+++..+...++....+- .++.++.+|..+...        ...+|++
T Consensus         3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v   80 (243)
T PRK07102          3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA-VAVSTHELDILDTASHAAFLDSLPALPDIV   80 (243)
T ss_pred             EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence            455444 56776666554    488999999998766554444433322 378889999876531        1246999


Q ss_pred             EECCCC
Q psy13204        134 FLSPPW  139 (189)
Q Consensus       134 ~~npp~  139 (189)
                      +.+...
T Consensus        81 v~~ag~   86 (243)
T PRK07102         81 LIAVGT   86 (243)
T ss_pred             EECCcC
Confidence            987654

>PRK07062 short chain dehydrogenase; Provisional

Probab=86.35  E-value=8.9  Score=29.19  Aligned_cols=75  Identities=12%  Similarity=-0.047  Sum_probs=47.5

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|++ |+++..+    ++.|++|+.++.+++.++.+.+.........++.++..|+.+..           ...
T Consensus         8 ~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          8 GRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            5667766654 4444444    44589999999998877666555543321125677788876643           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.|.-.
T Consensus        87 ~id~li~~Ag~   97 (265)
T PRK07062         87 GVDMLVNNAGQ   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            58999988654

>PRK06949 short chain dehydrogenase; Provisional

Probab=86.17  E-value=9.8  Score=28.70  Aligned_cols=73  Identities=14%  Similarity=0.083  Sum_probs=47.8

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..+++    .|++|++++.+++.++.........+  .++.++.+|+.+..           ...
T Consensus         9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (258)
T PRK06949          9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEAG   85 (258)
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            56666666 55666666554    48899999999887766655544333  25778888876532           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.+...
T Consensus        86 ~~d~li~~ag~   96 (258)
T PRK06949         86 TIDILVNNSGV   96 (258)
T ss_pred             CCCEEEECCCC
Confidence            57999987654

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=85.96  E-value=1.2  Score=35.97  Aligned_cols=44  Identities=30%  Similarity=0.296  Sum_probs=34.1

Q ss_pred             CCCCCEEEEecCC-CChHHHHHHH-hCCeEEEEeCCHHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCG-CGGNTIQFAA-VCQKVISIDIDPAKLRLAQHN  104 (189)
Q Consensus        61 ~~~~~~vlD~g~G-~G~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~  104 (189)
                      .+++++|+=.|+| .|.+++.+++ .|++|+++|.+++-.+.|++-
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l  209 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL  209 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh
Confidence            4458887766665 5668888887 499999999999988887654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=85.85  E-value=2.3  Score=36.72  Aligned_cols=56  Identities=11%  Similarity=0.086  Sum_probs=39.2

Q ss_pred             CCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         72 CGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        72 ~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      ||.|..+..+++    ++..++.+|.|++.++.+++    .    ....+++|..+..     .-.+.|.++.
T Consensus       423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~~~L~~a~i~~a~~viv  487 (558)
T PRK10669        423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R----GIRAVLGNAANEEIMQLAHLDCARWLLL  487 (558)
T ss_pred             ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C----CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence            555666666655    37889999999998877653    2    4688999988753     2246786665

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=85.65  E-value=3.4  Score=31.27  Aligned_cols=57  Identities=19%  Similarity=0.158  Sum_probs=37.5

Q ss_pred             CCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         73 GCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        73 G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      |.|.++..+++    .|..|+.+|.+++.++.....-      .....+++|..+..     .-..+|+++.
T Consensus         7 G~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~------~~~~~v~gd~t~~~~L~~agi~~aD~vva   72 (225)
T COG0569           7 GAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE------LDTHVVIGDATDEDVLEEAGIDDADAVVA   72 (225)
T ss_pred             CCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh------cceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence            45555555544    4889999999999887733211      15678888877643     2246777766

>PRK06125 short chain dehydrogenase; Provisional

Probab=85.59  E-value=11  Score=28.70  Aligned_cols=74  Identities=11%  Similarity=-0.074  Sum_probs=47.3

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------CCCCccE
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDV  132 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~  132 (189)
                      +++++=.|+ +|+++..+    ++.|++|++++.+++..+.+...+....- .++.++..|..+..       .....|+
T Consensus         7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHG-VDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcC-CceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            556666664 44455444    44588999999998877666555543321 25777888876532       1246899


Q ss_pred             EEECCCC
Q psy13204        133 VFLSPPW  139 (189)
Q Consensus       133 v~~npp~  139 (189)
                      ++.|+-.
T Consensus        85 lv~~ag~   91 (259)
T PRK06125         85 LVNNAGA   91 (259)
T ss_pred             EEECCCC
Confidence            9988644

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.59  E-value=12  Score=27.96  Aligned_cols=74  Identities=12%  Similarity=0.023  Sum_probs=48.3

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +.+++=.| |+|+++..+++    .|.+|+.++.++...+.........+  .++.++..|..+..           ...
T Consensus         7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (239)
T PRK07666          7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG   83 (239)
T ss_pred             CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            45565566 56777766654    48899999998876655544444333  36788888876543           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.+....
T Consensus        84 ~id~vi~~ag~~   95 (239)
T PRK07666         84 SIDILINNAGIS   95 (239)
T ss_pred             CccEEEEcCccc
Confidence            689999886543

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=85.39  E-value=10  Score=28.92  Aligned_cols=75  Identities=9%  Similarity=-0.036  Sum_probs=49.1

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      +++++=.|++.|.   .+..++..|++|+.++.+++.++.+.......+.  ++.++.+|+.+..           ....
T Consensus        10 ~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (265)
T PRK07097         10 GKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI--EAHGYVCDVTDEDGVQAMVSQIEKEVGV   87 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            5566666655433   2333445589999999998877766666654443  6788888887643           1135


Q ss_pred             ccEEEECCCCC
Q psy13204        130 GDVVFLSPPWG  140 (189)
Q Consensus       130 ~D~v~~npp~~  140 (189)
                      +|+++.+.-..
T Consensus        88 id~li~~ag~~   98 (265)
T PRK07097         88 IDILVNNAGII   98 (265)
T ss_pred             CCEEEECCCCC
Confidence            89999887654

>PRK07576 short chain dehydrogenase; Provisional

Probab=85.17  E-value=12  Score=28.69  Aligned_cols=72  Identities=17%  Similarity=0.031  Sum_probs=45.5

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..++    ..|++|+.++.+++..+.........+  .++.++..|..+..           ...
T Consensus         9 ~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~   85 (264)
T PRK07576          9 GKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFG   85 (264)
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            56666665 4555555544    458899999998876655544444333  25677788876532           113


Q ss_pred             CccEEEECCC
Q psy13204        129 QGDVVFLSPP  138 (189)
Q Consensus       129 ~~D~v~~npp  138 (189)
                      .+|+++.|.-
T Consensus        86 ~iD~vi~~ag   95 (264)
T PRK07576         86 PIDVLVSGAA   95 (264)
T ss_pred             CCCEEEECCC
Confidence            5799998763

>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=85.13  E-value=1.1  Score=34.68  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=27.9

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDI   93 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~   93 (189)
                      .++.+.|+++|+|..+..+-++|..|++-|+
T Consensus        27 s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDl   57 (330)
T COG3392          27 SGKIFCDIFAGTGVVGRFFKKAGNKIIANDL   57 (330)
T ss_pred             CCCeeeeeccCccHHHHHHHHhcchhhhchH
Confidence            3778999999999999999999988888775

>PRK08862 short chain dehydrogenase; Provisional

Probab=85.09  E-value=8.7  Score=28.85  Aligned_cols=72  Identities=18%  Similarity=0.091  Sum_probs=46.9

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC-
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL-  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~-  128 (189)
                      +++++=.|++.|.   .+..+++.|.+|+.+..+++.++.+.+.....+.  .+.....|..+..           .-. 
T Consensus         5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD--NVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--CeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5667766666654   4444455699999999999888776666554443  4555666655432           113 


Q ss_pred             CccEEEECC
Q psy13204        129 QGDVVFLSP  137 (189)
Q Consensus       129 ~~D~v~~np  137 (189)
                      .+|+++.|.
T Consensus        83 ~iD~li~na   91 (227)
T PRK08862         83 APDVLVNNW   91 (227)
T ss_pred             CCCEEEECC
Confidence            689999986

>PRK06139 short chain dehydrogenase; Provisional

Probab=85.08  E-value=8.9  Score=30.72  Aligned_cols=74  Identities=15%  Similarity=0.065  Sum_probs=49.4

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|+ +|+++..++    +.|++|+.++.+++.++...+.+...+.  ++.++..|..+..           ...
T Consensus         7 ~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (330)
T PRK06139          7 GAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASFGG   83 (330)
T ss_pred             CCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            455664454 555555554    4589999999999888777666655553  6677778876532           124


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .+|+++.|.-..
T Consensus        84 ~iD~lVnnAG~~   95 (330)
T PRK06139         84 RIDVWVNNVGVG   95 (330)
T ss_pred             CCCEEEECCCcC
Confidence            689999987543

>PRK09291 short chain dehydrogenase; Provisional

Probab=84.98  E-value=6.6  Score=29.65  Aligned_cols=73  Identities=14%  Similarity=0.067  Sum_probs=46.3

Q ss_pred             CEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         65 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      ++++=.| |+|+++..+++    .|++|+++..++...+.........+.  ++.++.+|..+..     .....|+++.
T Consensus         3 ~~vlVtG-asg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi~   79 (257)
T PRK09291          3 KTILITG-AGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLLN   79 (257)
T ss_pred             CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence            3455444 45666655543    488999999887766555544444443  5788888876643     1236899999


Q ss_pred             CCCCC
Q psy13204        136 SPPWG  140 (189)
Q Consensus       136 npp~~  140 (189)
                      |.-+.
T Consensus        80 ~ag~~   84 (257)
T PRK09291         80 NAGIG   84 (257)
T ss_pred             CCCcC
Confidence            86543

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=84.92  E-value=11  Score=28.16  Aligned_cols=73  Identities=16%  Similarity=0.091  Sum_probs=47.2

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +.+++=.| |+|+++..+++    .|.+|+.++.++..++.+.+.+...+  .++.++..|..+..           ...
T Consensus         5 ~~~~lItG-~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (253)
T PRK08217          5 DKVIVITG-GAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDFG   81 (253)
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            56677555 45665555544    48899999999877666555554433  36777888876532           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      .+|+|+.+.-.
T Consensus        82 ~id~vi~~ag~   92 (253)
T PRK08217         82 QLNGLINNAGI   92 (253)
T ss_pred             CCCEEEECCCc
Confidence            57999988653

>PRK05866 short chain dehydrogenase; Provisional

Probab=84.88  E-value=11  Score=29.44  Aligned_cols=73  Identities=11%  Similarity=-0.010  Sum_probs=47.5

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|+ +|+++..++    +.|.+|+.++.+++.++...+.....+.  .+.++.+|..+..           ...
T Consensus        40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~g  116 (293)
T PRK05866         40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG--DAMAVPCDLSDLDAVDALVADVEKRIG  116 (293)
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            566665554 555555554    4489999999998877666555543332  5678888877632           123


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.|.-.
T Consensus       117 ~id~li~~AG~  127 (293)
T PRK05866        117 GVDILINNAGR  127 (293)
T ss_pred             CCCEEEECCCC
Confidence            68999987643

>PRK07035 short chain dehydrogenase; Provisional

Probab=84.82  E-value=11  Score=28.33  Aligned_cols=73  Identities=10%  Similarity=-0.030  Sum_probs=46.0

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|++ |+++..+    ++.|++|+.++.+++..+...+.....+.  +..++..|..+..           ...
T Consensus         8 ~k~vlItGas-~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK07035          8 GKIALVTGAS-RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGG--KAEALACHIGEMEQIDALFAHIRERHG   84 (252)
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4555555544 5545444    44489999999998777666555544332  5677777876542           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.+...
T Consensus        85 ~id~li~~ag~   95 (252)
T PRK07035         85 RLDILVNNAAA   95 (252)
T ss_pred             CCCEEEECCCc
Confidence            58999987754

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=84.72  E-value=2.7  Score=36.72  Aligned_cols=56  Identities=14%  Similarity=0.237  Sum_probs=39.3

Q ss_pred             CCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         72 CGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        72 ~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      ||-|.++..+++    .+.+++.+|.|++.++.+++    .    ...++.+|+.+..     .-.+.|+++.
T Consensus       406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~agi~~A~~vv~  470 (601)
T PRK03659        406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAAGAEKAEAIVI  470 (601)
T ss_pred             ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence            566666666654    37899999999999887653    2    3578899987753     2235677666

>PRK08251 short chain dehydrogenase; Provisional

Probab=84.69  E-value=15  Score=27.59  Aligned_cols=74  Identities=9%  Similarity=-0.091  Sum_probs=48.0

Q ss_pred             CEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         65 DVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      ++++=.| |+|+++..+++.    |.+|+.++.+++..+..........-..++.+..+|..+..           ....
T Consensus         3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4555444 677777766554    88999999998877666555443221136788888887642           1135


Q ss_pred             ccEEEECCCC
Q psy13204        130 GDVVFLSPPW  139 (189)
Q Consensus       130 ~D~v~~npp~  139 (189)
                      .|+++.|.-.
T Consensus        82 id~vi~~ag~   91 (248)
T PRK08251         82 LDRVIVNAGI   91 (248)
T ss_pred             CCEEEECCCc
Confidence            7999988644

>PRK07904 short chain dehydrogenase; Provisional

Probab=84.22  E-value=7.7  Score=29.55  Aligned_cols=75  Identities=9%  Similarity=0.017  Sum_probs=47.0

Q ss_pred             CCCEEEEecCCCChHHHHHHH----hC-CeEEEEeCCHHH-HHHHHHHHHHhCCCCceEEEeCCcccCC----------C
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAA----VC-QKVISIDIDPAK-LRLAQHNASVYGVSHKIQFIQGDFFALA----------P  126 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~----~~-~~v~~vD~~~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~  126 (189)
                      .+.+|+=.|+ +|+++..+++    .| .+|+.++.+++. ++.+.+.+...+. .++.++.+|..+..          .
T Consensus         7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~   84 (253)
T PRK07904          7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA   84 (253)
T ss_pred             CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence            3566776666 5566665554    34 799999888764 5555455544432 36788888876532          1


Q ss_pred             CCCccEEEECCCC
Q psy13204        127 SLQGDVVFLSPPW  139 (189)
Q Consensus       127 ~~~~D~v~~npp~  139 (189)
                      ....|+++.|...
T Consensus        85 ~g~id~li~~ag~   97 (253)
T PRK07904         85 GGDVDVAIVAFGL   97 (253)
T ss_pred             cCCCCEEEEeeec
Confidence            1368988877544

>PRK06181 short chain dehydrogenase; Provisional

Probab=84.06  E-value=13  Score=28.15  Aligned_cols=69  Identities=13%  Similarity=0.040  Sum_probs=44.7

Q ss_pred             EEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCc
Q psy13204         66 VVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQG  130 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~  130 (189)
                      +++ +..|+|+++..+++    .|.+|++++.++...+...+.....+  .++.+..+|..+..           .....
T Consensus         3 ~vl-VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   79 (263)
T PRK06181          3 VVI-ITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGGI   79 (263)
T ss_pred             EEE-EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            455 34466666666644    48899999999876665555444333  36778888876642           11257


Q ss_pred             cEEEECC
Q psy13204        131 DVVFLSP  137 (189)
Q Consensus       131 D~v~~np  137 (189)
                      |+++.+.
T Consensus        80 d~vi~~a   86 (263)
T PRK06181         80 DILVNNA   86 (263)
T ss_pred             CEEEECC
Confidence            9998875

>TIGR00571 dam DNA adenine methylase (dam)

Probab=83.62  E-value=1.4  Score=34.27  Aligned_cols=29  Identities=21%  Similarity=0.392  Sum_probs=23.0

Q ss_pred             ceEEEeCCcccCC-CCCCccEEEECCCCCC
Q psy13204        113 KIQFIQGDFFALA-PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       113 ~~~~~~~d~~~~~-~~~~~D~v~~npp~~~  141 (189)
                      ++++.+.|+.+.. ....-|+|++||||..
T Consensus       155 ~v~i~~~Df~~~i~~~~~~dfvYlDPPY~~  184 (266)
T TIGR00571       155 NTTFLCGSFEKILAMVDDDSFVYCDPPYLP  184 (266)
T ss_pred             CCEEEECCHHHHHhhcCCCCEEEECCCCCC
Confidence            7899999998876 2345579999999964

All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.

>PRK08303 short chain dehydrogenase; Provisional

Probab=83.61  E-value=9.9  Score=30.04  Aligned_cols=71  Identities=11%  Similarity=0.004  Sum_probs=43.1

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCH----------HHHHHHHHHHHHhCCCCceEEEeCCcccCC----
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDP----------AKLRLAQHNASVYGVSHKIQFIQGDFFALA----  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~----------~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----  125 (189)
                      +++++=.|++. +++.++++    .|++|+.++.+.          +.++.+.+.+...+  .++.++.+|+.+..    
T Consensus         8 ~k~~lITGgs~-GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~   84 (305)
T PRK08303          8 GKVALVAGATR-GAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQVRA   84 (305)
T ss_pred             CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHHHH
Confidence            56777777554 45555544    488998888763          23333333343333  25667888877643    


Q ss_pred             -------CCCCccEEEECC
Q psy13204        126 -------PSLQGDVVFLSP  137 (189)
Q Consensus       126 -------~~~~~D~v~~np  137 (189)
                             .....|+++.|.
T Consensus        85 ~~~~~~~~~g~iDilVnnA  103 (305)
T PRK08303         85 LVERIDREQGRLDILVNDI  103 (305)
T ss_pred             HHHHHHHHcCCccEEEECC
Confidence                   113689999987

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=83.48  E-value=14  Score=28.34  Aligned_cols=73  Identities=14%  Similarity=-0.001  Sum_probs=46.4

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|+ +|+++..++    +.|.+|+.++.+++..+...+.+...+.  ++.++.+|..+..           .-.
T Consensus        10 ~k~vlVtGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (278)
T PRK08277         10 GKVAVITGG-GGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGG--EALAVKADVLDKESLEQARQQILEDFG   86 (278)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            455655554 455555444    4489999999988776655555543332  6778888876542           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      .+|+++.|...
T Consensus        87 ~id~li~~ag~   97 (278)
T PRK08277         87 PCDILINGAGG   97 (278)
T ss_pred             CCCEEEECCCC
Confidence            68999988654

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=83.25  E-value=13  Score=27.87  Aligned_cols=74  Identities=18%  Similarity=0.113  Sum_probs=48.6

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++.++=.| |+|..+..+++    .|.+|+.++.++...+.+.......+  .++.++.+|..+..           ...
T Consensus         3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~   79 (250)
T TIGR03206         3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQALG   79 (250)
T ss_pred             CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            34555555 45666666654    48899999999877766655554433  36788888876532           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.+....
T Consensus        80 ~~d~vi~~ag~~   91 (250)
T TIGR03206        80 PVDVLVNNAGWD   91 (250)
T ss_pred             CCCEEEECCCCC
Confidence            579999887654

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08589 short chain dehydrogenase; Validated

Probab=83.07  E-value=13  Score=28.60  Aligned_cols=73  Identities=16%  Similarity=0.053  Sum_probs=44.4

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|+ +|+++..++    +.|++|+.++.+ +..+...+.+...+  .++.++..|+.+..           ...
T Consensus         6 ~k~vlItGa-s~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          6 NKVAVITGA-STGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            455654454 455555544    458999999998 44444444443333  25777888876542           123


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        82 ~id~li~~Ag~~   93 (272)
T PRK08589         82 RVDVLFNNAGVD   93 (272)
T ss_pred             CcCEEEECCCCC
Confidence            589999987553

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=82.79  E-value=1.8  Score=31.76  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=17.7

Q ss_pred             HHHHHHHhCCeEEEEeCCHHHHHHHH
Q psy13204         77 NTIQFAAVCQKVISIDIDPAKLRLAQ  102 (189)
Q Consensus        77 ~~~~~~~~~~~v~~vD~~~~~~~~a~  102 (189)
                      .+..+|+.|.+|+|+|++++.++..+
T Consensus        15 ~A~~lA~~G~~V~g~D~~~~~v~~l~   40 (185)
T PF03721_consen   15 LAAALAEKGHQVIGVDIDEEKVEALN   40 (185)
T ss_dssp             HHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred             HHHHHHhCCCEEEEEeCChHHHHHHh
Confidence            34444666999999999999776654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=82.73  E-value=15  Score=27.72  Aligned_cols=74  Identities=15%  Similarity=0.070  Sum_probs=48.1

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|++ |+++..+    ++.|.+++.++.+++..+.+.......+.  ++.++..|+.+..           ...
T Consensus        11 ~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~~   87 (255)
T PRK06113         11 GKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFALSKLG   87 (255)
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            6677777754 4444444    44588999999888777665555443332  5677788877643           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .+|+++.+.-..
T Consensus        88 ~~d~li~~ag~~   99 (255)
T PRK06113         88 KVDILVNNAGGG   99 (255)
T ss_pred             CCCEEEECCCCC
Confidence            579999887643

>PRK07791 short chain dehydrogenase; Provisional

Probab=82.68  E-value=13  Score=28.97  Aligned_cols=74  Identities=19%  Similarity=0.011  Sum_probs=44.7

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCH---------HHHHHHHHHHHHhCCCCceEEEeCCcccCC-----
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDP---------AKLRLAQHNASVYGVSHKIQFIQGDFFALA-----  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~---------~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----  125 (189)
                      +++++=.|++. +++..+    ++.|++|+.++.+.         +.++.+.+.+...+.  ++.++..|+.+..     
T Consensus         6 ~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~~   82 (286)
T PRK07791          6 GRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG--EAVANGDDIADWDGAANL   82 (286)
T ss_pred             CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC--ceEEEeCCCCCHHHHHHH
Confidence            56676666554 444444    44589998888764         444444444443332  5677778876632     


Q ss_pred             ------CCCCccEEEECCCCC
Q psy13204        126 ------PSLQGDVVFLSPPWG  140 (189)
Q Consensus       126 ------~~~~~D~v~~npp~~  140 (189)
                            .....|+++.|.-..
T Consensus        83 ~~~~~~~~g~id~lv~nAG~~  103 (286)
T PRK07791         83 VDAAVETFGGLDVLVNNAGIL  103 (286)
T ss_pred             HHHHHHhcCCCCEEEECCCCC
Confidence                  124689999986543

>PRK09242 tropinone reductase; Provisional

Probab=82.51  E-value=18  Score=27.28  Aligned_cols=76  Identities=8%  Similarity=-0.039  Sum_probs=48.6

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|++ |+++..+    ++.|++|+.++.+++..+....+.....-..++.++.+|+.+..           ...
T Consensus         9 ~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   87 (257)
T PRK09242          9 GQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD   87 (257)
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5667766654 4444444    34489999999998877666655543311136778888876532           123


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.+.-..
T Consensus        88 ~id~li~~ag~~   99 (257)
T PRK09242         88 GLHILVNNAGGN   99 (257)
T ss_pred             CCCEEEECCCCC
Confidence            689999887553

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=82.27  E-value=13  Score=28.28  Aligned_cols=73  Identities=8%  Similarity=-0.108  Sum_probs=44.2

Q ss_pred             CCEEEEecCCCC-hHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCG-GNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G-~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      +++++=.|+++| +++.++++    .|++|+.++.++...+.+.+.....+   ...++.+|+.+..           ..
T Consensus        10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~   86 (258)
T PRK07533         10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEEW   86 (258)
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHHc
Confidence            678888887763 66555544    48999888888654332222222111   3346677766532           12


Q ss_pred             CCccEEEECCCC
Q psy13204        128 LQGDVVFLSPPW  139 (189)
Q Consensus       128 ~~~D~v~~npp~  139 (189)
                      ...|+++.|.-+
T Consensus        87 g~ld~lv~nAg~   98 (258)
T PRK07533         87 GRLDFLLHSIAF   98 (258)
T ss_pred             CCCCEEEEcCcc
Confidence            468999998754

>COG4889 Predicted helicase [General function prediction only]

Probab=82.23  E-value=2.8  Score=38.19  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=18.1

Q ss_pred             CCEEEEecCCCChHHHHHHHh
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV   84 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~   84 (189)
                      +-+|+|.+.|+|.|...+.+.
T Consensus       846 ~vhilDpFtGTGtFi~RlL~a  866 (1518)
T COG4889         846 SVHILDPFTGTGTFIVRLLSA  866 (1518)
T ss_pred             CeeeecCCCCccHHHHHHHHH
Confidence            679999999999998887663

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=82.09  E-value=3.6  Score=36.13  Aligned_cols=61  Identities=16%  Similarity=0.201  Sum_probs=40.4

Q ss_pred             CEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         65 DVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      .+|+=+|+|  .++...+    +.+..++.+|.|++.++.+++    .    ...++.+|..+..     .-.+.|++++
T Consensus       401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~agi~~A~~vvv  470 (621)
T PRK03562        401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----F----GMKVFYGDATRMDLLESAGAAKAEVLIN  470 (621)
T ss_pred             CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----c----CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence            456555555  4444443    347899999999999888754    2    3578899987753     2236776665

>PRK06196 oxidoreductase; Provisional

Probab=82.03  E-value=14  Score=29.18  Aligned_cols=69  Identities=16%  Similarity=0.111  Sum_probs=45.7

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++.++++    .|.+|++++.+++..+.+...+.      .+.++.+|+.+..           ...
T Consensus        26 ~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~~~   98 (315)
T PRK06196         26 GKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDSGR   98 (315)
T ss_pred             CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence            56666555 55666666655    48899999998876655433332      3677888877643           124


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.|...
T Consensus        99 ~iD~li~nAg~  109 (315)
T PRK06196         99 RIDILINNAGV  109 (315)
T ss_pred             CCCEEEECCCC
Confidence            68999998754

>PRK05650 short chain dehydrogenase; Provisional

Probab=81.99  E-value=11  Score=28.81  Aligned_cols=71  Identities=11%  Similarity=-0.067  Sum_probs=45.9

Q ss_pred             EEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCcc
Q psy13204         67 VIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGD  131 (189)
Q Consensus        67 vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D  131 (189)
                      ++=. .|+|+++..+++    .|.+|+.++.+++..+.+.......+  .++.++.+|+.+..           ....+|
T Consensus         3 vlVt-GasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   79 (270)
T PRK05650          3 VMIT-GAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGID   79 (270)
T ss_pred             EEEe-cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4433 456666655544    48899999998877666555554443  26778888876532           113689


Q ss_pred             EEEECCCCC
Q psy13204        132 VVFLSPPWG  140 (189)
Q Consensus       132 ~v~~npp~~  140 (189)
                      +++.|....
T Consensus        80 ~lI~~ag~~   88 (270)
T PRK05650         80 VIVNNAGVA   88 (270)
T ss_pred             EEEECCCCC
Confidence            999886544

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=81.97  E-value=9.4  Score=28.59  Aligned_cols=72  Identities=14%  Similarity=0.029  Sum_probs=46.0

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +.+++=. .|+|+++..+++    +|.+|++++.++...+.....+.. +  .++.++.+|+.+..           ...
T Consensus         5 ~~~vlIt-Gasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (251)
T PRK07231          5 GKVAIVT-GASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALERFG   80 (251)
T ss_pred             CcEEEEE-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            3445444 445555555544    488999999998766655444432 2  36788888877643           112


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      .+|+|+.+...
T Consensus        81 ~~d~vi~~ag~   91 (251)
T PRK07231         81 SVDILVNNAGT   91 (251)
T ss_pred             CCCEEEECCCC
Confidence            57999998755

>PRK08703 short chain dehydrogenase; Provisional

Probab=81.89  E-value=16  Score=27.26  Aligned_cols=73  Identities=15%  Similarity=0.026  Sum_probs=44.2

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------------C
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------------P  126 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------------~  126 (189)
                      +++++=.|+ +|+++..+++    .|.+|+.++.++...+.....+...+. ....++..|..+..             .
T Consensus         6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHHHHH
Confidence            567777774 5665555544    488999999998776665555443332 23445555553311             0


Q ss_pred             C-CCccEEEECCC
Q psy13204        127 S-LQGDVVFLSPP  138 (189)
Q Consensus       127 ~-~~~D~v~~npp  138 (189)
                      . ...|+++.+.-
T Consensus        84 ~~~~id~vi~~ag   96 (239)
T PRK08703         84 TQGKLDGIVHCAG   96 (239)
T ss_pred             hCCCCCEEEEecc
Confidence            1 35798888764

>PRK12939 short chain dehydrogenase; Provisional

Probab=81.87  E-value=14  Score=27.69  Aligned_cols=73  Identities=16%  Similarity=-0.014  Sum_probs=48.3

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++ +..|+|+++..+++    .|.+++.++.+++..+...+.....+  .++.+..+|+.+..           .-.
T Consensus         7 ~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   83 (250)
T PRK12939          7 GKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG   83 (250)
T ss_pred             CCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            45666 55566777777655    48899999988877666555544333  36788888887642           013


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      .+|+++.+.-.
T Consensus        84 ~id~vi~~ag~   94 (250)
T PRK12939         84 GLDGLVNNAGI   94 (250)
T ss_pred             CCCEEEECCCC
Confidence            68998887533

>TIGR00571 dam DNA adenine methylase (dam)

Probab=81.84  E-value=3.4  Score=32.13  Aligned_cols=48  Identities=15%  Similarity=0.294  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHH
Q psy13204         51 EKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL  100 (189)
Q Consensus        51 ~~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~  100 (189)
                      ..+...+...++. ..+.+|++||+|...+.+..  ..++.-|++++.+..
T Consensus        12 ~~l~~~i~~~~p~~~~~yvEPF~Gggsv~l~~~~--~~~~lND~n~~Li~~   60 (266)
T TIGR00571        12 TSLLPEIKKHLPKNFNCLVEPFVGGGAVFFNLNP--KRYLLNDINEDLINL   60 (266)
T ss_pred             HHHHHHHHHhcCcccCEEEEecCCcchhheeecC--cEEEEecCCHHHHHH
Confidence            4567778888876 46899999999999886643  357778999987643

All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.

>PRK07109 short chain dehydrogenase; Provisional

Probab=81.80  E-value=16  Score=29.27  Aligned_cols=73  Identities=14%  Similarity=-0.046  Sum_probs=48.7

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..++    +.|++|+.++.+++.++...+.+...+.  ++.++.+|+.+..           .-.
T Consensus         8 ~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          8 RQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEELG   84 (334)
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence            44555444 5556555554    4589999999998877766666655443  6778888876643           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      .+|+++.|.-.
T Consensus        85 ~iD~lInnAg~   95 (334)
T PRK07109         85 PIDTWVNNAMV   95 (334)
T ss_pred             CCCEEEECCCc
Confidence            68999988654

>PRK07454 short chain dehydrogenase; Provisional

Probab=81.79  E-value=18  Score=26.94  Aligned_cols=74  Identities=11%  Similarity=-0.097  Sum_probs=48.0

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      .++++=.| |+|+++..+++    +|.+|+.++.+++..+...+.....+  .++.++.+|+.+..           ...
T Consensus         6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (241)
T PRK07454          6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG   82 (241)
T ss_pred             CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            44566666 46666666554    48899999999876655544444332  36788889887643           013


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.+.-..
T Consensus        83 ~id~lv~~ag~~   94 (241)
T PRK07454         83 CPDVLINNAGMA   94 (241)
T ss_pred             CCCEEEECCCcc
Confidence            579999877543

>PRK06940 short chain dehydrogenase; Provisional

Probab=81.44  E-value=19  Score=27.78  Aligned_cols=71  Identities=17%  Similarity=0.048  Sum_probs=45.9

Q ss_pred             EEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----------CCCCccE
Q psy13204         66 VVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------PSLQGDV  132 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~~D~  132 (189)
                      +++=.|+  |+++..+++.   |.+|+.++.+++.++.+.+.+...+.  ++.++.+|+.+..          ....+|+
T Consensus         4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF--DVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            4444443  4677766654   88999999988776655555443332  6777888876642          1135899


Q ss_pred             EEECCCCC
Q psy13204        133 VFLSPPWG  140 (189)
Q Consensus       133 v~~npp~~  140 (189)
                      ++.|.-..
T Consensus        80 li~nAG~~   87 (275)
T PRK06940         80 LVHTAGVS   87 (275)
T ss_pred             EEECCCcC
Confidence            99987543

>PRK07677 short chain dehydrogenase; Provisional

Probab=80.79  E-value=15  Score=27.68  Aligned_cols=71  Identities=17%  Similarity=0.039  Sum_probs=44.7

Q ss_pred             CEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         65 DVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      ++++=.|+ +|+++..+    ++.|.+|+.++.++...+.+...+...+  .++.++.+|..+..           ....
T Consensus         2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (252)
T PRK07677          2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR   78 (252)
T ss_pred             CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            45665555 44444444    4458999999999877666555554333  36778888876532           1136


Q ss_pred             ccEEEECCC
Q psy13204        130 GDVVFLSPP  138 (189)
Q Consensus       130 ~D~v~~npp  138 (189)
                      .|+++.|.-
T Consensus        79 id~lI~~ag   87 (252)
T PRK07677         79 IDALINNAA   87 (252)
T ss_pred             ccEEEECCC
Confidence            799998764

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=80.53  E-value=11  Score=28.39  Aligned_cols=74  Identities=15%  Similarity=0.039  Sum_probs=50.0

Q ss_pred             CCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++ +..|+|.++..+++.    |.+|++++.+++..+.........+.  ++.++.+|..+..           ...
T Consensus         4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (258)
T PRK12429          4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG--KAIGVAMDVTDEEAINAGIDYAVETFG   80 (258)
T ss_pred             CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            34455 555677877777664    88999999998877666555544443  6788888877532           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .+|+++.+....
T Consensus        81 ~~d~vi~~a~~~   92 (258)
T PRK12429         81 GVDILVNNAGIQ   92 (258)
T ss_pred             CCCEEEECCCCC
Confidence            579999876543

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=80.41  E-value=14  Score=28.09  Aligned_cols=71  Identities=15%  Similarity=0.080  Sum_probs=45.1

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|+ +|+++..+    ++.|++|+.++.+++.++......   +  .++.++.+|..+..           ...
T Consensus         6 ~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   79 (263)
T PRK06200          6 GQVALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---G--DHVLVVEGDVTSYADNQRAVDQTVDAFG   79 (263)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence            556666664 45555544    445899999999987665543332   1  35677888876542           123


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|....
T Consensus        80 ~id~li~~ag~~   91 (263)
T PRK06200         80 KLDCFVGNAGIW   91 (263)
T ss_pred             CCCEEEECCCCc
Confidence            689999987653

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=80.32  E-value=13  Score=28.24  Aligned_cols=69  Identities=13%  Similarity=0.052  Sum_probs=44.0

Q ss_pred             EEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCcc
Q psy13204         67 VIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGD  131 (189)
Q Consensus        67 vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D  131 (189)
                      ++=.|+ +|+++..++    +.|++|+.++.+++.++.+.+.+...   .++.++..|..+..           .....|
T Consensus         3 vlItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          3 VLVTAS-SRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             EEEEcC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence            444443 455555544    45899999999988776665555432   25677888876532           124689


Q ss_pred             EEEECCCC
Q psy13204        132 VVFLSPPW  139 (189)
Q Consensus       132 ~v~~npp~  139 (189)
                      +++.|.-.
T Consensus        79 ~li~naG~   86 (259)
T PRK08340         79 ALVWNAGN   86 (259)
T ss_pred             EEEECCCC
Confidence            99988654

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=80.19  E-value=15  Score=27.75  Aligned_cols=72  Identities=18%  Similarity=0.197  Sum_probs=43.7

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|+ +|+++..+++    .|++|+.++.++.  +.+.+.....+  .++.++..|..+..           ...
T Consensus         8 ~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   82 (251)
T PRK12481          8 GKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMG   82 (251)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            677776664 5555555544    4899988876542  22223333333  36778888877643           123


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        83 ~iD~lv~~ag~~   94 (251)
T PRK12481         83 HIDILINNAGII   94 (251)
T ss_pred             CCCEEEECCCcC
Confidence            689999987543

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=80.18  E-value=4.9  Score=32.82  Aligned_cols=43  Identities=33%  Similarity=0.391  Sum_probs=34.2

Q ss_pred             CCCCEEEEecCCC-ChHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q psy13204         62 KASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHN  104 (189)
Q Consensus        62 ~~~~~vlD~g~G~-G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~~  104 (189)
                      .++.+|+..|||. |..+..+++. |. ++++++.+++..+.+++.
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            3478899999887 7777778776 65 599999999988887654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK07024 short chain dehydrogenase; Provisional

Probab=80.01  E-value=9.9  Score=28.85  Aligned_cols=69  Identities=12%  Similarity=-0.027  Sum_probs=43.2

Q ss_pred             EEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCc
Q psy13204         66 VVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQG  130 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~  130 (189)
                      +++=.| |+|+++..+++    .|++|+.++.+++.++...+.....   .++.++.+|+.+..           .....
T Consensus         4 ~vlItG-as~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i   79 (257)
T PRK07024          4 KVFITG-ASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAHGLP   79 (257)
T ss_pred             EEEEEc-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            344344 46666666544    4889999999987765544433211   26778888887632           12347


Q ss_pred             cEEEECCC
Q psy13204        131 DVVFLSPP  138 (189)
Q Consensus       131 D~v~~npp  138 (189)
                      |+++.|.-
T Consensus        80 d~lv~~ag   87 (257)
T PRK07024         80 DVVIANAG   87 (257)
T ss_pred             CEEEECCC
Confidence            99998864

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=80.01  E-value=5.8  Score=28.86  Aligned_cols=38  Identities=24%  Similarity=0.136  Sum_probs=25.0

Q ss_pred             EecCCCC--hHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Q psy13204         69 DGFCGCG--GNTIQFAAVCQKVISIDIDPAKLRLAQHNAS  106 (189)
Q Consensus        69 D~g~G~G--~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~  106 (189)
                      =+|+|.=  +++..++..|.+|+.+|.+++.++.+++.+.
T Consensus         4 ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~   43 (180)
T PF02737_consen    4 VIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIE   43 (180)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHH
Confidence            3555532  2444445669999999999999988776654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
3gdh_A	241	Methyltransferase Domain Of Human Trimethylguanosin		6e-41
3egi_A	206	Methyltransferase Domain Of Human Trimethylguanosin		2e-40
2zzn_A	336	The Complex Structure Of Atrm5 And Trnacys Length =		3e-04
1kxz_A	192	Mt0146, The Precorrin-6y Methyltransferase (Cbit) H		5e-04
1wzn_A	252	Crystal Structure Of The Sam-Dependent Methyltransf		6e-04
2zzm_A	336	The Complex Structure Of Atrm5 And Trnaleu Length =		7e-04
2yx1_A	336	Crystal Structure Of M.Jannaschii Trna M1g37 Methyl		9e-04

>pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine Synthase 1 (Tgs1) Bound To M7gtp And Adenosyl-Homocysteine (Active Form) Length = 241

Iteration: 1
 Score =  163 bits (412), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 79/147 (53%), Positives = 106/147 (72%), Gaps = 6/147 (4%)
Query: 43  ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
           E W+SVTPEK+A+HIA R   S   DVV+D FCG GGNTIQFA    +VI+IDIDP K+ 
Sbjct: 55  EGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIA 114
Query: 100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 158
           LA++NA VYG++ KI+FI GDF  LA  L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct: 115 LARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPD 174
Query: 159 GGGRRLFQVARGISPNVGYYLPRTSDV 185
             G  +F++++ I+ N+ Y+LPR +D+
Sbjct: 175 --GFEIFRLSKKITNNIVYFLPRNADI 199

>pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine Synthase Tgs1 Bound To M7gpppa (Inactive Form) Length = 206

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 104/146 (71%), Gaps = 4/146 (2%)
Query: 43  ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
           E W+SVTPEK+A+HIA R   S   DVV+D FCG GGNTIQFA    +VI+IDIDP K+ 
Sbjct: 20  EGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGXRVIAIDIDPVKIA 79
Query: 100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQG 159
           LA++NA VYG++ KI+FI GDF  LA  L+ DVVFLSPPWGGP+YA +  + D       
Sbjct: 80  LARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAE-TFDIRTXXSP 138
Query: 160 GGRRLFQVARGISPNVGYYLPRTSDV 185
            G  +F++++ I+ N+ Y+LPR +D+
Sbjct: 139 DGFEIFRLSKKITNNIVYFLPRNADI 164

>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys Length = 336

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 56  HIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSH 112
            I  +   +DVV+D F G G     F+  C+   K+ +IDI+P  + L + N  +  + H
Sbjct: 188 RIMKKVSLNDVVVDMFAGVG----PFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEH 243
Query: 113 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGG 160
           KI  I  D   +   ++G+ V ++ P    ++   +  I     E+GG
Sbjct: 244 KIIPILSDVREV--DVKGNRVIMNLPKFAHKFIDKALDI----VEEGG 285

>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog From M. Thermoautotrophicum, P1 Spacegroup Length = 192

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 64  SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 120
           +DV +D  CG GG T++ A   ++V +ID +P  +   + N   +G+   +   +GD
Sbjct: 34  NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEXNLQRHGLGDNVTLXEGD 90

>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase From Pyrococcus Horikoshii Ot3 Length = 252

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 67  VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 126
           V+D  CG G  T++ A    +V+ +D+    LR+A+  A    +  KI+F+QGD   +A 
Sbjct: 45  VLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF 102
Query: 127 SLQGDVV 133
             + D V
Sbjct: 103 KNEFDAV 109

>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu Length = 336

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 56  HIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSH 112
            I  +   +DVV+D F G G     F+  C+   K+ +IDI+P  + L   N  +  + H
Sbjct: 188 RIMKKVSLNDVVVDMFAGVG----PFSIACKNAKKIYAIDINPHAIELLXKNIKLNKLEH 243
Query: 113 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGG 160
           KI  I  D   +   ++G+ V ++ P    ++   +  I     E+GG
Sbjct: 244 KIIPILSDVREV--DVKGNRVIMNLPKFAHKFIDKALDI----VEEGG 285

>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37 Methyltransferase Length = 336

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 56  HIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSH 112
            I  +   +DVV+D F G G     F+  C+   K+ +IDI+P  + L + N  +  + H
Sbjct: 188 RIXKKVSLNDVVVDXFAGVG----PFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEH 243
Query: 113 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGG 160
           KI  I  D   +   ++G+ V  + P    ++   +  I     E+GG
Sbjct: 244 KIIPILSDVREV--DVKGNRVIXNLPKFAHKFIDKALDI----VEEGG 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	2e-54
3ll7_A	410	Putative methyltransferase; methytransferase, stru	8e-26
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	4e-12
2frn_A	278	Hypothetical protein PH0793; structural genomics,	1e-10
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	2e-10
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	3e-10
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	3e-10
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	1e-09
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	1e-09
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	2e-09
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	5e-09
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	6e-09
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	7e-09
3ocj_A	305	Putative exported protein; structural genomics, PS	7e-09
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	1e-08
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	2e-08
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	2e-08
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	2e-08
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	3e-08
3lcc_A	235	Putative methyl chloride transferase; halide methy	4e-08
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	5e-08
3lpm_A	259	Putative methyltransferase; structural genomics, p	5e-08
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	7e-08
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	1e-07
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	1e-07
3f4k_A	257	Putative methyltransferase; structural genomics, P	1e-07
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	1e-07
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-07
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	2e-07
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	2e-07
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	3e-07
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	3e-07
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	4e-07
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	4e-07
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	6e-07
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	1e-06
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	1e-06
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	2e-06
1xxl_A	239	YCGJ protein; structural genomics, protein structu	2e-06
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	3e-06
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	3e-06
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	3e-06
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	3e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	4e-06
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	4e-06
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	6e-06
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	7e-06
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	7e-06
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	1e-05
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	1e-05
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	1e-05
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	1e-05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	2e-05
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	2e-05
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	4e-05
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	5e-05
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	5e-05
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	5e-05
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	6e-05
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	6e-05
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	6e-05
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	6e-05
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	7e-05
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	9e-05
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	9e-05
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	1e-04
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	1e-04
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	1e-04
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-04
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-04
2qm3_A	373	Predicted methyltransferase; putative methyltransf	2e-04
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	2e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-04
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	2e-04
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	2e-04
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	2e-04
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	2e-04
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	2e-04
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	3e-04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	3e-04
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	3e-04
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	3e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-04
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	4e-04
2b3t_A	276	Protein methyltransferase HEMK; translation termin	5e-04
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	5e-04
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	6e-04
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	6e-04
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	7e-04
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	7e-04
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	8e-04
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	8e-04
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	9e-04

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score =  172 bits (436), Expect = 2e-54
 Identities = 79/150 (52%), Positives = 108/150 (72%), Gaps = 6/150 (4%)

Query: 43  ESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
           E W+SVTPEK+A+HIA R   S   DVV+D FCG GGNTIQFA    +VI+IDIDP K+ 
Sbjct: 55  EGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIA 114

Query: 100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 158
           LA++NA VYG++ KI+FI GDF  LA  L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct: 115 LARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSP- 173

Query: 159 GGGRRLFQVARGISPNVGYYLPRTSDVFEL 188
             G  +F++++ I+ N+ Y+LPR +D+ ++
Sbjct: 174 -DGFEIFRLSKKITNNIVYFLPRNADIDQV 202

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score =  101 bits (252), Expect = 8e-26
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 43  ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 102
            S    +    + + +   +    V+D   G G + I   +   + I I+ +      A+
Sbjct: 73  LSLEQSSGAVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAAR 132

Query: 103 HNASVYG-VSHKIQFIQGDFFALAPSLQG---DVVFLSPPWGGPEYARSSFSID 152
           HN  +       +  + GDF    P ++    D +++ P        R     D
Sbjct: 133 HNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIAD 186

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 55  QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKI 114
             I  +   +DVV+D F G G  +I      +K+ +IDI+P  + L + N  +  + HKI
Sbjct: 187 ARIMKKVSLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKI 245

Query: 115 QFIQGDFFALAPSLQGDVVFLSPPWGGPEY 144
             I  D   +    +G+ V ++ P    ++
Sbjct: 246 IPILSDVREVDV--KGNRVIMNLPKFAHKF 273

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 1/113 (0%)

Query: 40  DATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKL 98
           D  +  +S    K    +A   K  ++V+D F G G  ++  A     KVI+I+ DP   
Sbjct: 102 DVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF 161

Query: 99  RLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSI 151
           +    N  +  V  ++     D          D + +       E+   + SI
Sbjct: 162 KFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVRTHEFIPKALSI 214

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 51  EKVAQHIASRCKAS-DVVIDGFCGCGGNTIQFA--AVCQKVISIDIDPAKLRLAQHNASV 107
             +A  +    +     V+D  CG G   I+ A      ++I I+     L  A+ NA  
Sbjct: 204 ASIANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALA 263

Query: 108 YGVSHKIQFIQGDFFAL-APSLQGDVVFLSPPWG 140
            GV  KI+FIQGD   L       D    + P+G
Sbjct: 264 AGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG 297

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 51  EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNA 105
             +AQ +      +    V+D F G G   ++ A+       V + D+D  +L LA+  A
Sbjct: 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAA 248

Query: 106 SVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 140
              G+S  I+F++ D   L     + D +  +PP G
Sbjct: 249 LASGLSW-IRFLRADARHLPRFFPEVDRILANPPHG 283

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 65  DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
           DV +D  CG GG T++ A   ++V +ID +P  +   + N   +G+   +  ++GD    
Sbjct: 35  DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA 94

Query: 125 APSLQG-DVVFL 135
              +   D+  +
Sbjct: 95  LCKIPDIDIAVV 106

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 12/130 (9%)

Query: 55  QHIASRCKASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSH 112
           Q +A+       ++D         I       C   I+ ++     + A  N S +G++ 
Sbjct: 13  QKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTS 72

Query: 113 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGI- 171
           KI     +  +                GG         I +I        +L  V   + 
Sbjct: 73  KIDVRLANGLSAFEEADNIDTITICGMGG-------RLIADILNN--DIDKLQHVKTLVL 123

Query: 172 SPNVGYYLPR 181
            PN      R
Sbjct: 124 QPNNREDDLR 133

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 57  IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQF 116
           +A       +V+D   G G +T   A + +KV + D+    L       S  G+ +  + 
Sbjct: 16  LAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIEN-TEL 74

Query: 117 IQGDFFALAPSLQGDV 132
           I      L   ++  +
Sbjct: 75  ILDGHENLDHYVREPI 90

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 10/106 (9%)

Query: 55  QHIASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHK 113
             +    +  D V+D F   GG  I  A A   +VI ID  P  +  A+ NA + GV  +
Sbjct: 209 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDR 268

Query: 114 IQFIQGDFFALAPSLQG-----DVVFLSPPWGGPEYARSSFSIDNI 154
           ++FI G  F     LQ      D+V L P    P + +    +   
Sbjct: 269 MKFIVGSAFEEMEKLQKKGEKFDIVVLDP----PAFVQHEKDLKAG 310

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 55  QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKI 114
           +   +  +  + V+D +   GG  ++ A      +++D D   L +    A   G+    
Sbjct: 206 RLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVD- 264

Query: 115 QFIQGDFFALAPSLQG--DVVFLSPP 138
               G+       L+G    V L PP
Sbjct: 265 -IRHGEALPTLRGLEGPFHHVLLDPP 289

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 65  DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
           DVV+D  CG GG T++ A  C+ V +ID     + + + N + + + +  Q I+G    +
Sbjct: 37  DVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKN-CQIIKGRAEDV 95

Query: 125 APSLQGDVVFL 135
              L+ +  F+
Sbjct: 96  LDKLEFNKAFI 106

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 52.6 bits (126), Expect = 7e-09
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 14/132 (10%)

Query: 55  QHIASRCKASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSH 112
           + +AS    ++ + D                     I+ ++     + AQ      G++ 
Sbjct: 13  EKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTE 72

Query: 113 KIQFIQGD-FFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGI 171
           +I   +G+    +      D + ++    G         I  I  E  G  +L  V + I
Sbjct: 73  QIDVRKGNGLAVIEKKDAIDTIVIA--GMGGT------LIRTILEE--GAAKLAGVTKLI 122

Query: 172 -SPNVGYYLPRT 182
             PN+  +  R 
Sbjct: 123 LQPNIAAWQLRE 134

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 53.2 bits (127), Expect = 7e-09
 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 19/128 (14%)

Query: 51  EKVAQHIASRCKASDVVID-GFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNAS 106
               + +    +   VV     CG     +          +++ ID DP  L  A   A+
Sbjct: 106 GHFRRALQRHLRPGCVVASVP-CGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA 164

Query: 107 VYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLF- 165
            + ++ +I   + D + L      D++              S  ++   P+      L+ 
Sbjct: 165 GHALAGQITLHRQDAWKLDTREGYDLLT-------------SNGLNIYEPDDARVTELYR 211

Query: 166 QVARGISP 173
           +  + + P
Sbjct: 212 RFWQALKP 219

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 65  DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
           +++ D   G G  ++++     + I+I+    ++   Q N   YG+S +++ +QG   A 
Sbjct: 57  ELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116

Query: 125 APSLQG-DVVFLS 136
              L   + VF+ 
Sbjct: 117 LADLPLPEAVFIG 129

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 2/105 (1%)

Query: 30  FELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVI 89
             L       D     Y+ T        A++  +   V+D  CG G N++  + +   V 
Sbjct: 87  CTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVT 146

Query: 90  SIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF 134
           S D +   +           +   I     D  A       D + 
Sbjct: 147 SWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIV 189

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} Length = 385

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 92  DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140
           DID   + +A+ NA + GV   I+F  GD        +   +  +PP+G
Sbjct: 264 DIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYG 312

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} Length = 393

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 92  DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140
           DID   + +A+ NA   G+   I F Q          +  VV  +PP+G
Sbjct: 270 DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYG 318

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} Length = 384

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 92  DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140
           D D   + +A+ NA   G+   ++  Q        +    V+  +PP+G
Sbjct: 263 DFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYG 311

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 72  CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 131
           CG G + +  A+  + V+ +DI  + L  A         +    F++ D F   P+   D
Sbjct: 75  CGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFD 134

Query: 132 VVFLS------PPWGGPEYARS 147
           ++F         P   P +A+S
Sbjct: 135 LIFDYVFFCAIEPEMRPAWAKS 156

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433

 Score = 50.6 bits (122), Expect = 5e-08
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 121
           +  D V+D FCG G  T+  A     V+ ++  PA +   Q NA + G+ + + F   + 
Sbjct: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENL 343

Query: 122 FALAPSLQG-----DVVFLSPP 138
                         D V L P 
Sbjct: 344 EEDVTKQPWAKNGFDKVLLDPA 365

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 67  VIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 125
           +ID   G G   +  +   + K++ ++I      +A+ + +   +  +I+ I+ D   + 
Sbjct: 53  IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112

Query: 126 PSLQG---DVVFLSPPW 139
             +     D+V  +PP+
Sbjct: 113 DLIPKERADIVTCNPPY 129

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 49.5 bits (118), Expect = 7e-08
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 18/133 (13%)

Query: 55  QHIASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGV 110
           + +AS      +++D   G     +    V     +  I+ ++     + A  N   +G+
Sbjct: 7   ELVASFVSQGAILLD--VGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL 64

Query: 111 SHKIQFIQGDFFA-LAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVAR 169
             KIQ    +  A    + Q  V+ ++    G         I  I  E  G  +L  V R
Sbjct: 65  KEKIQVRLANGLAAFEETDQVSVITIA--GMGGR------LIARILEE--GLGKLANVER 114

Query: 170 GI-SPNVGYYLPR 181
            I  PN      R
Sbjct: 115 LILQPNNREDDLR 127

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 120
               ++ D  CG GG T+  A     +V  +D     + +   NA   G+ +++  I G 
Sbjct: 45  TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGS 104

Query: 121 FFAL 124
              L
Sbjct: 105 MDDL 108

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 64  SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 123
            + ++D + G G   I  A     V   D +   + +A+ N  +  V      +  D   
Sbjct: 291 GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDA-EFEVASDREV 349

Query: 124 LAPSLQGDVVFLSPP 138
                  D V + PP
Sbjct: 350 SVKGF--DTVIVDPP 362

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 120
                + D  CG GG T+  A   + ++  ID+ P  + +   NA     + +++ I G 
Sbjct: 45  TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGS 104

Query: 121 FFAL 124
              L
Sbjct: 105 MDNL 108

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 55  QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVS 111
            +I    K  D V+D  CG G +T   A++     +V   DI    +       +   + 
Sbjct: 14  DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI 73

Query: 112 HKIQFIQGDFFALAPSLQGDV 132
            ++  I+     +   +   V
Sbjct: 74  DRVTLIKDGHQNMDKYIDCPV 94

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 54  AQHIASRCK-ASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVS 111
           A++I +R    +   ID   G G  +I  A      + ++D       +A  N +   ++
Sbjct: 33  AENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN 92

Query: 112 HKIQFIQGDFFAL 124
            +IQ +QGD   +
Sbjct: 93  DRIQIVQGDVHNI 105

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} Length = 258

 Score = 48.6 bits (115), Expect = 2e-07
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 12/95 (12%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPA-------KLRLAQHNASVYGVSHKI 114
            A   V D   G G ++   A++   V + +  PA        +R A  N      + +I
Sbjct: 82  TAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARI 141

Query: 115 QFIQGDFFALAPSL-----QGDVVFLSPPWGGPEY 144
               G+     P+L     + D+V+L P +     
Sbjct: 142 NLHFGNAAEQMPALVKTQGKPDIVYLDPMYPERRK 176

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 18/156 (11%)

Query: 3   LKLQTLDWIKNLSDVLDTVNNSTGLEYFELTLADADNDATESWYSVTPEKVAQHIASRC- 61
           +KL T      L  +L  V N +  +  +L   +     +   Y  T   +   +     
Sbjct: 114 MKLNTRPSTGLLRHILQQVYNHSVTDPEKL---NNYEPFSPEVYGETSFDLVAQMIDEIK 170

Query: 62  -KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNA-------SVYGVS 111
               D+ +D   G G   +Q AA   C+    ++      + A+            YG  
Sbjct: 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 230

Query: 112 H-KIQFIQGDFFAL---APSLQGDVVFLSPPWGGPE 143
           H +    +GDF +           V+F++    GPE
Sbjct: 231 HAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPE 266

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 66  VVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
           VV D   G G  +     +  ++VI +++D   + +   N   +    K +   G     
Sbjct: 52  VVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIG--DVS 107

Query: 125 APSLQGDVVFLSPPWG 140
             + + D+V ++PP+G
Sbjct: 108 EFNSRVDIVIMNPPFG 123

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 3/99 (3%)

Query: 36  DADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP 95
           D +    +   + T  +V + +          +D  CG G N++  AA    V + D + 
Sbjct: 7   DENYFTDKYELTRTHSEVLEAVKVVKPGK--TLDLGCGNGRNSLYLAANGYDVDAWDKNA 64

Query: 96  AKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF 134
             +   +   S+  + + +     D   L    Q D + 
Sbjct: 65  MSIANVERIKSIENLDN-LHTRVVDLNNLTFDRQYDFIL 102

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 67  VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 126
            +D F   GG  +  A   ++V+++D     LR A+ NA + G+   ++ ++ + F L  
Sbjct: 213 ALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLR 271

Query: 127 SLQG-----DVVFLSPPWGGPEYARSSFSIDN 153
            L+      D+V L P    P +A+    ++ 
Sbjct: 272 RLEKEGERFDLVVLDP----PAFAKGKKDVER 299

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 26  GLEYFELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVC 85
           G + +   +     D     Y    E +   +    K    V+D  CG GG +       
Sbjct: 2   GFKEYY-RVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG 60

Query: 86  QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
            +V+ +DI    +R A+  A        ++FI GD   L
Sbjct: 61  FEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKL 97

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 28  EYFELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQK 87
           + ++ +    + ++ E W S +   +        K    V+D  CG G  T + +    K
Sbjct: 18  KKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK 77

Query: 88  VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
            + +DI    ++  +           + FI+GD  +L
Sbjct: 78  AVGVDISEVMIQKGKERGE----GPDLSFIKGDLSSL 110

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 29  YFELTLADADNDA---TESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVC 85
           Y  L    A++D     ++ +          ++    A    ++  C  G  T + A  C
Sbjct: 14  YQSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC 73

Query: 86  QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 136
           +++  ID+ P  +  A      +     I +   D    + +   D++ ++
Sbjct: 74  KRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFSTAELFDLIVVA 121

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 58  ASRCKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQ 115
             R +  +  +    G    T    +     +V  ++I+P    L++      GV   + 
Sbjct: 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVN 175

Query: 116 FIQGDFFALAPSLQGDVVFLS 136
            I GD   +   L+ DV+ ++
Sbjct: 176 VITGDETVI-DGLEFDVLMVA 195

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 119
                V++  CG G  T+  A      ++ SIDI P  L  A+ N    G+ + ++F+Q 
Sbjct: 36  PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQA 94

Query: 120 DFFAL 124
           + F+L
Sbjct: 95  NIFSL 99

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 58  ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 117
            + C+A   V+D   G G   + F+   Q+ I +D     + +A   A   GV + ++F 
Sbjct: 16  TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVEN-VRFQ 74

Query: 118 QGDFFAL 124
           QG   +L
Sbjct: 75  QGTAESL 81

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Length = 369

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 18/89 (20%)

Query: 67  VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 126
           +++ +CG G  ++  A    +V++ +I    +  AQ+N +   + + +Q I+        
Sbjct: 217 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAAEEFTQ 275

Query: 127 SLQG-----------------DVVFLSPP 138
           ++ G                 + +F+ PP
Sbjct: 276 AMNGVREFNRLQGIDLKSYQCETIFVDPP 304

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 67  VIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFAL 124
           V++ F   GG  +      C +V+S+D     L +A+ N  +  +   K +F++ D F L
Sbjct: 224 VLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL 283

Query: 125 APSLQG-----DVVFLSPP 138
             + +      DV+ + PP
Sbjct: 284 LRTYRDRGEKFDVIVMDPP 302

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* Length = 703

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 92  DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD---VVFLSPPWG 140
           D D   ++ A+ NA + G+   I F   D   L   L       V  +PP+G
Sbjct: 263 DSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYG 314

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 65  DVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 123
             VID   G G        +  + V + DIDP  +  A+ N         + F+      
Sbjct: 53  RSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVA--DV 104

Query: 124 LAPSLQGDVVFLSPPWG 140
              S + D   ++PP+G
Sbjct: 105 SEISGKYDTWIMNPPFG 121

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 72  CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 131
            G G  T   + +  +V ++D     +  A  +         ++F Q D F   P  Q D
Sbjct: 55  SGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHG-----LDNVEFRQQDLFDWTPDRQWD 109

Query: 132 VVF 134
            VF
Sbjct: 110 AVF 112

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 87  KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 138
           KV + ++D      A+ N      + ++    G           DV+F +PP
Sbjct: 81  KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 120
           +     +D   G GG            +  ++I P + +  +   +  G++  I    G 
Sbjct: 81  QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS 140

Query: 121 FFAL 124
           F  +
Sbjct: 141 FLEI 144

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGD 120
              D ++D  CG G   I  A   +     DI+   ++LA+ N  +  +  + I+ +  D
Sbjct: 51  DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD 110

Query: 121 FFALAPSLQGDVVFLSPP 138
            +      + + +  +PP
Sbjct: 111 LYENVKDRKYNKIITNPP 128

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 44.0 bits (105), Expect = 7e-06
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 87  KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 123
            V + D+    + +A+ NA  +GVS +    +G+F  
Sbjct: 148 IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE 184

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 55  QHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS 111
             + +    ++ D V+D  CG G   ++ A     +V  I I   ++  A   A+  G++
Sbjct: 51  DEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA 110

Query: 112 HKIQFIQGDFFAL 124
           +++ F   D   L
Sbjct: 111 NRVTFSYADAMDL 123

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 67  VIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFA 123
           V++ F      ++  AA+       S+D+      L+  +     +     Q +  D F 
Sbjct: 216 VLNLFSYTAAFSVA-AAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD 274

Query: 124 LAPSLQG-----DVVFLSPP 138
                +      D++ + PP
Sbjct: 275 YFKYARRHHLTYDIIIIDPP 294

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A Length = 258

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP--------AKLRLAQHNASVYGVSHK 113
                V+D   G G +    A+V  +V  ++ +P           R          +  +
Sbjct: 87  DYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQER 146

Query: 114 IQFIQGDFFALAPSL--QGDVVFLSPPWGGPE 143
           +Q I          +  +  VV+L P +   +
Sbjct: 147 LQLIHASSLTALTDITPRPQVVYLDPMFPHKQ 178

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 60  RCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQF 116
             +    +++   G G  +            +  ++ D   L+ A  N S +     ++ 
Sbjct: 107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRT 166

Query: 117 IQGDFFALAPSLQGDVVF--LSPPWGGPEYAR 146
            + D          D V   +  PW   +   
Sbjct: 167 SRSDIADFISDQMYDAVIADIPDPWNHVQKIA 198

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 65  DVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 122
           + + D   G G   I++         +  +I   +      NA   GVS     +Q    
Sbjct: 27  ETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSD-RIAVQQGAP 85

Query: 123 ALAPSLQG--DVVFLSP 137
                +    DV+F+  
Sbjct: 86  RAFDDVPDNPDVIFIGG 102

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 12/63 (19%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 78  TIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG---DV 132
           ++QFA++     V +I+ +   ++ A+ N + Y   ++++ I+G+      ++     D+
Sbjct: 86  SMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDM 145

Query: 133 VFL 135
           +F+
Sbjct: 146 IFI 148

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Length = 272

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 55  QHIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSH 112
           + +A     ++VV+D F G G  TI  A     + V +I+ +P        N  +  +++
Sbjct: 111 KRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN 170

Query: 113 KIQFIQGDFFALAPSLQGDVVFLSPP 138
            I  +  +       +   V+     
Sbjct: 171 VIPILADNRDVELKDVADRVIMGYVH 196

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 57  IASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQ 115
           I    K  D V+D  CG GG+ +++      +   +DI    +  A+  A       K+ 
Sbjct: 58  IRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVF 117

Query: 116 FIQGDFFA 123
           F   D + 
Sbjct: 118 FRAQDSYG 125

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 10/137 (7%)

Query: 19  DTVNNSTGLEY--FELTLADADNDATESWYSVTPEKVAQHIASRCKAS--DVVIDGFCGC 74
           + + +  G E+      + D  +        V P K A  I +    S  D +++   G 
Sbjct: 46  EAIKSHKGHEFKILRPRIVDYLDKMKRGPQIVHP-KDAALIVAYAGISPGDFIVEAGVGS 104

Query: 75  GGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 131
           G  T+  A +     +V+S +I     +LA  N    G   ++     D +        D
Sbjct: 105 GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVD 164

Query: 132 VVFL--SPPWGGPEYAR 146
            V L    P    E+A 
Sbjct: 165 HVILDLPQPERVVEHAA 181

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 60  RCKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNAS---VYGVSHKI 114
               +  + D   G G   +  AA  +  +V   +        A+ +         S +I
Sbjct: 33  ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARI 92

Query: 115 QFIQGDFFALA--------PSLQGDVVFLSPPW 139
           + ++ D    A        P      V ++PP+
Sbjct: 93  EVLEADVTLRAKARVEAGLPDEHFHHVIMNPPY 125

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 72  CGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
           CG G   +    +     K   ID     L  A+    +       +F++GD   +
Sbjct: 31  CGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI 84

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 87  KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG-DVVFL 135
           +V+ ID D   +  A+      G+  +++   GD   +A   +  D++F+
Sbjct: 83  RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFM 132

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 65  DVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 122
            V+ D   G    +I+ + +    ++ +++ +P  L   + N   +   + +  ++    
Sbjct: 42  LVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARN-VTLVEAFAP 100

Query: 123 ALAPSLQG-DVVFLSPP 138
                L   D VF+   
Sbjct: 101 EGLDDLPDPDRVFIGGS 117

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 58  ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 117
            +  K ++ V+D   G G     FA   +KV++ D+    L++A+      G    ++++
Sbjct: 32  IAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYV 90

Query: 118 QGDFFAL 124
           QGD   +
Sbjct: 91  QGDAEQM 97

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 34  LADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDI 93
           +     +  ++      E   +      +    V+D  CG G  T++ A    +V+ +D+
Sbjct: 15  IYRRRIERVKAEIDFVEEIFKEDAKREVR---RVLDLACGTGIPTLELAERGYEVVGLDL 71

Query: 94  DPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF 134
               LR+A+  A    +  KI+F+QGD   +A   + D V 
Sbjct: 72  HEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEFDAVT 110

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 87  KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG----DVVFL 135
            ++SI+ D  +   A  +    G+  +I+ + GD   L   L+     DV+F+
Sbjct: 80  TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 9/93 (9%)

Query: 51  EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY 108
             V   + S       VID  CG G            +++  +D+  + L  A+    + 
Sbjct: 19  GTVVAVLKSVNAKK--VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID 76

Query: 109 GVSH----KIQFIQGDFFALAPSLQG-DVVFLS 136
            +      +I   Q           G D   + 
Sbjct: 77  RLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 7/93 (7%)

Query: 53  VAQHIASRCKASDVVIDGFCGCGGNTIQFAA---VCQKVISIDIDPAKLRLAQHNASVYG 109
             +++  +      V D     G   I+F       +K  + DI    + + + N  +  
Sbjct: 42  GLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN 101

Query: 110 VSHKIQFIQGDFFAL----APSLQGDVVFLSPP 138
           +      I G               D V L P 
Sbjct: 102 IPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPF 134

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Length = 332

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 13/135 (9%)

Query: 51  EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 110
           E +   + +  +   V ++ F   G  ++  AA   +V  +D     +  A+ N  + G+
Sbjct: 142 EWLKNAVETADRPLKV-LNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGL 200

Query: 111 SHK-IQFIQGDFFALAPSLQG-----DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRL 164
               I++I  D        +      D++   P    P++ R +     ++        +
Sbjct: 201 EQAPIRWICEDAMKFIQREERRGSTYDIILTDP----PKFGRGTHG--EVWQLFDHLPLM 254

Query: 165 FQVARGISPNVGYYL 179
             + R I       L
Sbjct: 255 LDICREILSPKALGL 269

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 87  KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG-------DVVFL 135
           ++++++I+P    + Q   +  G+  K+  + G    L P L+        D+VFL
Sbjct: 85  RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFL 140

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 22/135 (16%), Positives = 37/135 (27%), Gaps = 14/135 (10%)

Query: 51  EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNAS-- 106
             V   +         VID  CG G            +++  +D+    L +AQ      
Sbjct: 19  NGVVAALKQSNARR--VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL 76

Query: 107 --VYGVSHKIQFIQGDFFALAPSLQG-DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRR 163
                   ++Q IQG          G D   +       + +R       +F        
Sbjct: 77  RLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIV 136

Query: 164 LFQVARGISPNVGYY 178
           +        PN+ Y 
Sbjct: 137 IVTT-----PNIEYN 146

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 121
           K+   V++   G G  T +     + V  I+       +A+          +    +GDF
Sbjct: 44  KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKL-----PKEFSITEGDF 98

Query: 122 FALAPSLQGDVVFLS 136
            +       D +  +
Sbjct: 99  LSFEVPTSIDTIVST 113

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Length = 373

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 7/77 (9%)

Query: 71  FCGCGGNT---IQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALAP 126
             G    T   +  + + +++  +DID    +  +  A+  G    I+    D    L  
Sbjct: 178 VLGDDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYED-IEIFTFDLRKPLPD 236

Query: 127 SLQG--DVVFLSPPWGG 141
                 D     PP   
Sbjct: 237 YALHKFDTFITDPPETL 253

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 51  EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 110
           E + + +         V+D   G G  T+  A +  +V+ ++ D A +   Q       +
Sbjct: 221 EALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANAL 280

Query: 111 SHKIQFIQGDFF-ALAPSLQGDVVFLSPP 138
             K Q +  D   AL    + D++  +PP
Sbjct: 281 --KAQALHSDVDEALTEEARFDIIVTNPP 307

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 6/73 (8%)

Query: 55  QHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS 111
           + I S      +  V+D   G GG  +            IDI    + +A         +
Sbjct: 45  KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERV---SGN 101

Query: 112 HKIQFIQGDFFAL 124
           +KI F   D    
Sbjct: 102 NKIIFEANDILTK 114

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 29  YFELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKV 88
           Y +L  AD D    + W     + + +         D  +D  CG G  T       +  
Sbjct: 10  YDKLIRADVD---YKKWS----DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNT 62

Query: 89  ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF 134
            ++D+    L  A++     G+  K +    D   L  + + D++ 
Sbjct: 63  WAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDLIT 106

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 49  TPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNA 105
           T EK A  +      K    ++D   G G     +A         ID+       A+  A
Sbjct: 21  TEEKYA-TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRA 79

Query: 106 SVYGVSHKIQFIQGDFFALAPSLQGDVV 133
              GVS ++ FI  D      + + DV 
Sbjct: 80  EELGVSERVHFIHNDAAGYVANEKCDVA 107

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 18/116 (15%)

Query: 57  IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQF 116
           +        +V+D     G  T         V+S D++   L   +              
Sbjct: 17  LEREGLEMKIVLDLGTSTGVITE-QLRKRNTVVSTDLNIRALESHRGG----------NL 65

Query: 117 IQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFS-------IDNIFPEQGGGRRLF 165
           ++ D          DVV  +PP+                  ID        G    
Sbjct: 66  VRADLLCSINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYL 121

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 13  NLSDVL---DTVNNSTGLEYFELTLADADNDATESWYSVTPEKVAQHIASRCKASDVVID 69
           +L+  +    T  +S G    E  +      A     +   + +AQ +         V+D
Sbjct: 112 DLTAAVLKGGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLD 171

Query: 70  GFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS 127
                G   I  A      ++  +D   + L +A+ NA + GV+ +   I G  F +   
Sbjct: 172 ISASHGLFGIAVAQHNPNAEIFGVDW-ASVLEVAKENARIQGVASRYHTIAGSAFEVDYG 230

Query: 128 LQGDVVFLS 136
              D+V L 
Sbjct: 231 NDYDLVLLP 239

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 40  DATESWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPA 96
           D   +       ++A  +AS         V ++   G G   +   A   + I++D D A
Sbjct: 13  DRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAA 72

Query: 97  KLRLAQHNASVYGVSHKIQFIQGDFFAL 124
            L + +   +  GV  K+Q +Q D  A+
Sbjct: 73  MLEVFRQKIA--GVDRKVQVVQADARAI 98

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 87  KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYAR 146
           K++  D+      +A+      G+ +KI    G   AL  +LQ  +   S P    ++A 
Sbjct: 87  KILCCDVSEEWTNVARKYWKENGLENKIFLKLGS--AL-ETLQVLIDSKSAPSWASDFAF 143

Query: 147 SSFSIDNIF 155
              SID  F
Sbjct: 144 GPSSIDLFF 152

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 121
           +  + ++D  CG G  T + A    +V+  D     +  A+ N         + F   D 
Sbjct: 56  QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYP------HLHFDVADA 109

Query: 122 FALAPSLQGDVVF 134
                    D VF
Sbjct: 110 RNFRVDKPLDAVF 122

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 23/155 (14%), Positives = 41/155 (26%), Gaps = 31/155 (20%)

Query: 34  LADADNDATESWYSVTPEK-----VAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKV 88
           LA         W  V             ++        V++  CG G +  +F     + 
Sbjct: 14  LARELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAARW 73

Query: 89  ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG---DVVFLSPPWGGPEYA 145
            + D  P  L+LA+ NA            + +     P+  G    ++            
Sbjct: 74  AAYDFSPELLKLARANAP------HADVYEWNGKGELPAGLGAPFGLIV----------- 116

Query: 146 RSSFSIDNIFPE-----QGGGRRLFQVARGISPNV 175
            S     ++              L+   R   P V
Sbjct: 117 -SRRGPTSVILRLPELAAPDAHFLYVGPRLNVPEV 150

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Length = 421

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 15/97 (15%)

Query: 49  TPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVIS---IDIDPAKLRLAQH 103
           TP +V   + S         V++  C  G     F            ++IDP  L L   
Sbjct: 23  TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW 82

Query: 104 NASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140
                      + I  DF    P    D++  +PP+G
Sbjct: 83  A----------EGILADFLLWEPGEAFDLILGNPPYG 109

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 7/100 (7%)

Query: 35  ADADNDATESWYSVTPEKVAQHIASRCKASD---VVIDGFCGCGGNTIQFAAVCQKVISI 91
               N     W +     V   +       +    +ID  CG G  T   +    +VI +
Sbjct: 25  KTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGL 84

Query: 92  DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 131
           D+  + L +A    +   +S    +   D      + Q  
Sbjct: 85  DVSKSALEIAAKENTAANIS----YRLLDGLVPEQAAQIH 120

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 8/57 (14%)

Query: 87  KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG--------DVVFL 135
           K++++DI+     L        GV HKI F +G    +   +          D +F+
Sbjct: 106 KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFV 162

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 87  KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS-PP 138
           ++I++D  P  + LAQ NA    + + I  +Q D+F+     Q  ++ +S PP
Sbjct: 135 EIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQSDWFSALAGQQFAMI-VSNPP 185

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 53  VAQHIASRCKASDV--VIDGFCGCGGNTIQFAAVCQ-----KVISIDIDPAKLRLAQHNA 105
             Q +    K   V  +ID   G  G+    AA+ +         +++ P  + L   NA
Sbjct: 178 AIQLLLEEAKLDGVKKMID-VGGGIGDIS--AAMLKHFPELDSTILNL-PGAIDLVNENA 233

Query: 106 SVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 136
           +  GV+ +++ I  D +  +   + D V   
Sbjct: 234 AEKGVADRMRGIAVDIYKESYP-EADAVLFC 263

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 2/141 (1%)

Query: 51  EKVAQHIASRCKASDVVIDGFCGCGGNTIQF-AAVCQKVISIDIDPAKLRLAQHNASVYG 109
            +  + +  + K    V+D  CG GG+ +++      K++  DI    ++  Q       
Sbjct: 22  GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMK 81

Query: 110 VSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP-EYARSSFSIDNIFPEQGGGRRLFQVA 168
                ++I    F  A S +  ++          +     F     F        + + A
Sbjct: 82  NRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNA 141

Query: 169 RGISPNVGYYLPRTSDVFELF 189
                  GY++  T + FEL 
Sbjct: 142 CERLSPGGYFIGTTPNSFELI 162

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 40  DATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99
             +E  Y   P      +A++     + +    G G N    A++  +V ++D     L 
Sbjct: 7   SQSEYVYGTEPNDFLVSVANQIPQGKI-LCLAEGEGRNACFLASLGYEVTAVDQSSVGLA 65

Query: 100 LAQHNASVYGVSHKIQFIQGDFFALAP 126
            A+  A   GV   I  +Q +      
Sbjct: 66  KAKQLAQEKGVK--ITTVQSNLADFDI 90

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 87  KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG----DVVFL 135
           ++++++ D    ++A+ N  + GV  ++   +G       SL      D++F+
Sbjct: 90  QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 2/85 (2%)

Query: 67  VIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
           V+D  C  G  T+  A      +++ +DID   +  A+ N   Y         Q      
Sbjct: 50  VLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDP 109

Query: 125 APSLQGDVVFLSPPWGGPEYARSSF 149
               +     +      P    +S 
Sbjct: 110 GAEGEEGTTTVRKRSCFPASLTASR 134

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 65  DVVIDGFC-GCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 120
             VID  C   G  T   AA+ +   K+ + D+D  +L       +  GVS   +  + D
Sbjct: 104 SHVID-ACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEED 161

Query: 121 FFALAPSLQG----DVVFLSPP 138
           F A++PS         + L P 
Sbjct: 162 FLAVSPSDPRYHEVHYILLDPS 183

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 57  IASRCKASDVVIDGFCGCGGNTIQFA--AVCQKVISIDIDPAKLRLAQHNASVYGVSHKI 114
           +        +V+D     G   I+FA     ++V   DI      L + N  +       
Sbjct: 41  VLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR 100

Query: 115 QFIQGDFFA 123
           +        
Sbjct: 101 ESKGRAILK 109

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 38.1 bits (88), Expect = 9e-04
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 58  ASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHK- 113
           A        V+D  CG G +    + +     KVI +D+   +L +A+     +      
Sbjct: 78  ADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFG 137

Query: 114 ------IQFIQGDFFALA 125
                 ++F++G    LA
Sbjct: 138 SPSRSNVRFLKGFIENLA 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.88
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.78
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.72
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.71
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.7
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.69
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.68
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.67
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.66
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.66
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.66
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.66
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.66
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.65
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.65
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.65
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.65
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.65
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.64
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.64
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.63
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.62
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.62
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.61
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.61
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.6
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.6
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.6
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.6
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.59
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.58
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.58
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.58
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.57
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.57
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.57
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.56
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.55
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.55
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.55
3lkd_A	542	Type I restriction-modification system methyltrans	99.54
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.53
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.52
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.52
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.52
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.52
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.52
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.52
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.51
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.51
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.51
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.51
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.51
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.51
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.51
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.51
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.5
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.5
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.49
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.49
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.48
3khk_A	544	Type I restriction-modification system methylation	99.48
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.48
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.47
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.47
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.47
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.47
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.47
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.46
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.46
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.46
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.46
3ufb_A	530	Type I restriction-modification system methyltran	99.46
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.46
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.45
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.45
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.45
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.45
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.45
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.45
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.44
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.44
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.43
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.43
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.43
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.43
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.43
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.43
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.42
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.42
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.42
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.42
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.42
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.42
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.42
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.41
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.41
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.41
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.41
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.41
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.41
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.41
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.4
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.4
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.4
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.4
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.4
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.4
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.39
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.39
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.39
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.39
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.39
3ocj_A	305	Putative exported protein; structural genomics, PS	99.38
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.38
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.38
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.38
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.38
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.37
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.37
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.37
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.37
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.37
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.37
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.37
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.37
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.37
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.36
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.36
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.36
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.36
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.35
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.35
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.35
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.35
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.35
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.35
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.35
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.34
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.34
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.34
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.34
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.33
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.33
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.33
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.32
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.32
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.32
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.32
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.32
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.32
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.32
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.31
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.31
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.31
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.31
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.31
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.3
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.3
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.3
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.3
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.3
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.3
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.3
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.3
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.3
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.29
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.29
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.29
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.28
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.28
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.27
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.27
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.27
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.27
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.27
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.27
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.26
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.26
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.26
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.26
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.26
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.26
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.25
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.25
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.25
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.24
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.24
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.24
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.24
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.24
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.24
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.24
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.24
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.23
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.23
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.23
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.22
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.21
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.21
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.21
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.2
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.2
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.2
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.2
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.2
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.19
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.19
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.19
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.19
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.19
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.18
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.18
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.18
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.17
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.17
2o07_A	304	Spermidine synthase; structural genomics, structur	99.17
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.17
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.16
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.15
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.15
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.14
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.14
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.14
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.13
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.13
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.12
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.12
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.11
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.11
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.07
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.06
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.06
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.06
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.05
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.05
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.04
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.03
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.02
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.99
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.99
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.99
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.98
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.96
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.95
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.95
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.95
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.94
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.94
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.93
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.92
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.92
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.91
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	98.91
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.91
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.91
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.91
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.9
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	98.88
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.88
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.88
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.88
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.86
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.86
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.83
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.82
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.82
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.79
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.76
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	98.75
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	98.75
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.74
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.72
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.71
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.69
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	98.69
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.67
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.65
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.61
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.61
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	98.61
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.61
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.5
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.47
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	98.41
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.41
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.4
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.38
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.36
3me5_A	482	Cytosine-specific methyltransferase; structural ge	98.34
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.33
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.32
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.31
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	98.22
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	98.21
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.14
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.14
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	98.11
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	98.07
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	98.02
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.98
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.9
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	97.85
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.76
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.66
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.49
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.4
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.36
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.22
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.21
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.19
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.11
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	95.14
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.74
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.74
2qrv_B	230	DNA (cytosine-5)-methyltransferase 3-like; DNA met	94.57
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	94.27
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	94.1
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	94.08
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.05
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	93.69
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.22
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	92.89
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	92.86
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	92.64
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	92.43
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	92.21
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	92.2
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	92.08
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	91.83
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	91.81
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	91.78
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.63
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	91.62
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	91.39
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	91.22
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	91.09
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	90.8
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	90.75
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.64
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.56
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	90.5
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	90.38
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	90.17
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	90.15
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	90.01
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	89.92
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	89.88
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	89.86
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	89.82
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	89.72
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	89.61
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	89.6
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	89.59
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.57
1id1_A	153	Putative potassium channel protein; RCK domain, E.	89.41
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	89.37
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	89.35
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	89.33
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	89.15
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	89.14
1yf3_A	259	DNA adenine methylase; T4DAM, methyltransferase, t	89.11
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.09
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	89.04
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	88.8
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	88.73
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	88.71
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	88.65
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	88.49
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	88.47
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	88.29
3imf_A	257	Short chain dehydrogenase; structural genomics, in	88.24
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	88.08
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	88.04
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	88.04
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	88.04
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	87.99
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	87.99
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	87.98
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	87.94
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	87.92
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	87.91
2dpm_A	284	M.dpnii 1, protein (adenine-specific methyltransfe	87.88
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	87.69
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	87.66
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	87.6
3cxt_A	291	Dehydrogenase with different specificities; rossma	87.4
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	87.34
2g1p_A	278	DNA adenine methylase; DAM methylation, GATC recog	87.05
2dpm_A	284	M.dpnii 1, protein (adenine-specific methyltransfe	86.78
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	86.78
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	86.69
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	86.6
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	86.16
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	86.1
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	85.9
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	85.88
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	85.74
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	85.66
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	85.63
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	85.61
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	85.52
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	85.46
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	85.44
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	85.32
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	85.28
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	85.16
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	85.08
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	84.91
4dqx_A	277	Probable oxidoreductase protein; structural genomi	84.89
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	84.86
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	84.77
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	84.62
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	84.58
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	84.58
2g1p_A	278	DNA adenine methylase; DAM methylation, GATC recog	84.57
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	84.24
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	84.22
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	84.22
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	84.1
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	84.05
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	84.04
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	83.95
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	83.7
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	83.64
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	83.6
3rih_A	293	Short chain dehydrogenase or reductase; structural	83.31
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	83.31
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	83.21
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	83.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	82.72
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	82.61
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	82.6
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	82.59
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	82.51
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	82.48
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	82.46
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	82.38
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	82.26
1yf3_A	259	DNA adenine methylase; T4DAM, methyltransferase, t	82.22
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	82.1
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	82.02
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	81.91
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	81.79
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	81.79
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	81.76
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	81.66
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	81.56
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	81.55
1xq1_A	266	Putative tropinone reducatse; structural genomics,	81.48
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	81.05
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	81.0
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	80.95
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	80.94
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	80.68
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	80.64
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	80.56
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	80.31
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	80.28
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	80.25
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	80.16
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	80.14
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	80.07
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	80.03

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.88  E-value=1.3e-22  Score=153.43  Aligned_cols=151  Identities=52%  Similarity=0.973  Sum_probs=127.1

Q ss_pred             CCcccCCCcccccChHHHHHHHHHhCC---CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy13204         36 DADNDATESWYSVTPEKVAQHIASRCK---ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH  112 (189)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  112 (189)
                      .+...+..+|++.+++.+.+.+...+.   ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...++..
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~  127 (241)
T 3gdh_A           48 DGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIAD  127 (241)
T ss_dssp             GTCCCCHHHHHHCCCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGG
T ss_pred             CCceecccceeecCHHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            345556668888888766666555432   48899999999999999999999999999999999999999999998866


Q ss_pred             ceEEEeCCcccCCCCCCccEEEECCCCCCCcccc-ccccccccCcCCCCchhHHHHhhhcCCceEEEcCCCCCcccc
Q psy13204        113 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYAR-SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEL  188 (189)
Q Consensus       113 ~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~~~~-~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~lp~~~~~~~l  188 (189)
                      +++++++|+.+..+..+||+|++||||++..... ...++..++++  ||..+++......+...+++|++.++.++
T Consensus       128 ~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~p--gG~~i~~~~~~~~~~~~~~lp~~~~~~~~  202 (241)
T 3gdh_A          128 KIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSP--DGFEIFRLSKKITNNIVYFLPRNADIDQV  202 (241)
T ss_dssp             GEEEEESCHHHHGGGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSS--CHHHHHHHHHHHCSCEEEEEETTBCHHHH
T ss_pred             CeEEEECChHHhcccCCCCEEEECCCcCCcchhhhHHHHHHhhcCC--cceeHHHHHHhhCCceEEECCCCCCHHHH
Confidence            8999999999887667999999999999877665 44567778855  58899999999999999999999887643

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.78  E-value=7.1e-19  Score=141.88  Aligned_cols=145  Identities=15%  Similarity=0.177  Sum_probs=119.6

Q ss_pred             CcccCCC-cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh--CCCCc
Q psy13204         37 ADNDATE-SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY--GVSHK  113 (189)
Q Consensus        37 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~  113 (189)
                      ++.+++. ++.|.+++.++.+.+..++.+.+|+|+|||+|..++.+++.+.+|+++|+|+.+++.|++|+..+  |+ .+
T Consensus        66 ~l~~p~~~~~eQat~e~vA~~~a~~l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~  144 (410)
T 3ll7_A           66 SLYIPSRLSLEQSSGAVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG-KD  144 (410)
T ss_dssp             TCCCCCHHHHHHSCCHHHHHHGGGGSCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT-CE
T ss_pred             CeecCCCCChhhcCHHHHHHHHHHhcCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC-Cc
Confidence            4555555 77788888888777777766899999999999999999999999999999999999999999988  88 68


Q ss_pred             eEEEeCCcccCCC---CCCccEEEECCCCCCCccccccccccccCcCCCCchhHHHHhhhcCCceEEEcCCCCCcc
Q psy13204        114 IQFIQGDFFALAP---SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF  186 (189)
Q Consensus       114 ~~~~~~d~~~~~~---~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~lp~~~~~~  186 (189)
                      ++++++|+.+.++   ...||+|++||||... ...+..++.++.|+   ...+.......++..++.++++.|++
T Consensus       145 i~~i~~Da~~~L~~~~~~~fDvV~lDPPrr~~-~~grv~~led~~P~---l~~~~~~l~~~~~~~~vK~sP~ld~~  216 (410)
T 3ll7_A          145 VNILTGDFKEYLPLIKTFHPDYIYVDPARRSG-ADKRVYAIADCEPD---LIPLATELLPFCSSILAKLSPMIDLW  216 (410)
T ss_dssp             EEEEESCGGGSHHHHHHHCCSEEEECCEEC------CCCCGGGEESC---HHHHHHHHGGGSSEEEEEECTTSCHH
T ss_pred             EEEEECcHHHhhhhccCCCceEEEECCCCcCC-CCceEEehhhcCCC---HHHHHHHHHhhCCcEEEEcCCCCChH
Confidence            9999999998642   2589999999999873 22356778888887   66666666666788999999999987

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.72  E-value=6.7e-17  Score=131.68  Aligned_cols=113  Identities=19%  Similarity=0.283  Sum_probs=93.4

Q ss_pred             cchhhhhhhcC-CcccCCCcccccChHH---HHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHH
Q psy13204         26 GLEYFELTLAD-ADNDATESWYSVTPEK---VAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLA  101 (189)
Q Consensus        26 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a  101 (189)
                      |.+++.+.+.+ .+.+++.+|||.++..   +.+.+.+ +.++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|
T Consensus       250 G~~~i~e~~~g~~f~~~~~~F~q~n~~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A  328 (425)
T 2jjq_A          250 GKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMA  328 (425)
T ss_dssp             ECSCEEEEETTEEEEECTTSCCCSBHHHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCeEEEEECCEEEEEccccccccCHHHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            55555554433 5778899999987753   3344444 55688999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204        102 QHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      ++|+..+++ . ++++++|+.+..+. .||+|++|||+.+.
T Consensus       329 ~~n~~~ngl-~-v~~~~~d~~~~~~~-~fD~Vv~dPPr~g~  366 (425)
T 2jjq_A          329 RRNVEINNV-D-AEFEVASDREVSVK-GFDTVIVDPPRAGL  366 (425)
T ss_dssp             HHHHHHHTC-C-EEEEECCTTTCCCT-TCSEEEECCCTTCS
T ss_pred             HHHHHHcCC-c-EEEEECChHHcCcc-CCCEEEEcCCccch
Confidence            999999998 3 99999999988654 89999999998753

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.71  E-value=1.7e-17  Score=120.95  Aligned_cols=120  Identities=16%  Similarity=0.221  Sum_probs=88.1

Q ss_pred             ccChHHHHHHHHHhC-----CCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCC
Q psy13204         47 SVTPEKVAQHIASRC-----KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD  120 (189)
Q Consensus        47 ~~~~~~~~~~~~~~~-----~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d  120 (189)
                      ..+++.+.+.+...+     .++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|++|+..+++ .+++++++|
T Consensus        23 rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d  101 (189)
T 3p9n_A           23 RPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGA  101 (189)
T ss_dssp             ---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESC
T ss_pred             ccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEcc
Confidence            334444555444433     3488999999999999998877754 799999999999999999999988 689999999


Q ss_pred             cccCC---CCCCccEEEECCCCCCC-c-cccccccccc--cCcCCCCchhHHHHhh
Q psy13204        121 FFALA---PSLQGDVVFLSPPWGGP-E-YARSSFSIDN--IFPEQGGGRRLFQVAR  169 (189)
Q Consensus       121 ~~~~~---~~~~~D~v~~npp~~~~-~-~~~~~~~~~~--~l~~~~~g~~~~~~~~  169 (189)
                      +.+..   +..+||+|++||||+.. . .......+.+  ++++  ||..+++...
T Consensus       102 ~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~p--gG~l~~~~~~  155 (189)
T 3p9n_A          102 VAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTRE--GTVAVVERAT  155 (189)
T ss_dssp             HHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCT--TCEEEEEEET
T ss_pred             HHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCC--CeEEEEEecC
Confidence            98864   35789999999999974 2 2222233444  6644  4666665543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.70  E-value=1.8e-16  Score=122.05  Aligned_cols=108  Identities=19%  Similarity=0.227  Sum_probs=89.7

Q ss_pred             CcccCCC-cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCce
Q psy13204         37 ADNDATE-SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKI  114 (189)
Q Consensus        37 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~  114 (189)
                      .+.+|.. .+|...-..-...++...++|.+|+|+|||+|.+++.+++.| .+|+++|+||.+++.+++|++.+++.+++
T Consensus        98 ~~~~D~~k~~f~~~~~~er~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v  177 (278)
T 3k6r_A           98 KYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRM  177 (278)
T ss_dssp             EEEEETTTSCCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTE
T ss_pred             EEEEeccceEEcCCcHHHHHHHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcE
Confidence            4555543 344433333456677888889999999999999999999886 58999999999999999999999998789


Q ss_pred             EEEeCCcccCCCCCCccEEEECCCCCCCcc
Q psy13204        115 QFIQGDFFALAPSLQGDVVFLSPPWGGPEY  144 (189)
Q Consensus       115 ~~~~~d~~~~~~~~~~D~v~~npp~~~~~~  144 (189)
                      +++++|+.++.+...||.|++|||+.....
T Consensus       178 ~~~~~D~~~~~~~~~~D~Vi~~~p~~~~~~  207 (278)
T 3k6r_A          178 SAYNMDNRDFPGENIADRILMGYVVRTHEF  207 (278)
T ss_dssp             EEECSCTTTCCCCSCEEEEEECCCSSGGGG
T ss_pred             EEEeCcHHHhccccCCCEEEECCCCcHHHH
Confidence            999999999887788999999999875443

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.69  E-value=2.6e-17  Score=119.31  Aligned_cols=128  Identities=20%  Similarity=0.236  Sum_probs=94.1

Q ss_pred             cccCCCcccccChHHHHHHHHHhCC---CCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCc
Q psy13204         38 DNDATESWYSVTPEKVAQHIASRCK---ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHK  113 (189)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~  113 (189)
                      +..........+++.+.+.+.+.+.   ++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++..+++.++
T Consensus        16 ~~~~~~~~~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~   95 (187)
T 2fhp_A           16 LKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEK   95 (187)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGG
T ss_pred             ccCCCCCCcCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcc
Confidence            4444444555666777777766653   47899999999999999988875 6899999999999999999999987567


Q ss_pred             eEEEeCCcccCCC-----CCCccEEEECCCCCCCccccccccc--cccCcCCCCchhHHHH
Q psy13204        114 IQFIQGDFFALAP-----SLQGDVVFLSPPWGGPEYARSSFSI--DNIFPEQGGGRRLFQV  167 (189)
Q Consensus       114 ~~~~~~d~~~~~~-----~~~~D~v~~npp~~~~~~~~~~~~~--~~~l~~~~~g~~~~~~  167 (189)
                      ++++++|+.+..+     ..+||+|++||||+..........+  .++|++  ||..+++.
T Consensus        96 ~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~--gG~l~~~~  154 (187)
T 2fhp_A           96 FEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTN--EAVIVCET  154 (187)
T ss_dssp             EEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEE--EEEEEEEE
T ss_pred             eEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCC--CCEEEEEe
Confidence            9999999987542     5789999999998743222222222  445544  35544443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.68  E-value=2.8e-17  Score=121.23  Aligned_cols=120  Identities=18%  Similarity=0.225  Sum_probs=83.4

Q ss_pred             ccChHHHHHHHHHhCC---CCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCc
Q psy13204         47 SVTPEKVAQHIASRCK---ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDF  121 (189)
Q Consensus        47 ~~~~~~~~~~~~~~~~---~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~  121 (189)
                      ..+++.+.+.+.+.+.   ++.+|||+|||+|.+++.++..+ .+|+|+|+|+.+++.|++|+..+++. .+++++++|+
T Consensus        34 rp~~~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~  113 (201)
T 2ift_A           34 RPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSS  113 (201)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCH
T ss_pred             CcCHHHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCH
Confidence            3344444444433332   37899999999999999877765 58999999999999999999998874 4899999999


Q ss_pred             ccCCC---CCC-ccEEEECCCCCCCccccccccc--cccCcCCCCchhHHHHh
Q psy13204        122 FALAP---SLQ-GDVVFLSPPWGGPEYARSSFSI--DNIFPEQGGGRRLFQVA  168 (189)
Q Consensus       122 ~~~~~---~~~-~D~v~~npp~~~~~~~~~~~~~--~~~l~~~~~g~~~~~~~  168 (189)
                      .+..+   ..+ ||+|++||||+..........+  .++|++  ||..++++.
T Consensus       114 ~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~Lkp--gG~l~i~~~  164 (201)
T 2ift_A          114 LDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKP--NALIYVETE  164 (201)
T ss_dssp             HHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEE--EEEEEEEEE
T ss_pred             HHHHHhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCC--CcEEEEEEC
Confidence            87653   467 9999999998732222222233  344644  365544443

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.67  E-value=7.4e-16  Score=119.06  Aligned_cols=104  Identities=17%  Similarity=0.209  Sum_probs=86.4

Q ss_pred             CcccCC--CcccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCc
Q psy13204         37 ADNDAT--ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHK  113 (189)
Q Consensus        37 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~  113 (189)
                      .+.++.  ..|++..+.. ...+...++++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|++|+..+++.++
T Consensus        98 ~f~~d~~~~~f~~~~~~~-~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~  176 (278)
T 2frn_A           98 KYKLDVAKIMFSPANVKE-RVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDR  176 (278)
T ss_dssp             EEEEETTTSCCCGGGHHH-HHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTT
T ss_pred             EEEEEccceeEcCCcHHH-HHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCce
Confidence            344543  3455555443 555666677799999999999999999999877 599999999999999999999999656


Q ss_pred             eEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204        114 IQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus       114 ~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      ++++++|+.+.....+||+|++|||+..
T Consensus       177 v~~~~~D~~~~~~~~~fD~Vi~~~p~~~  204 (278)
T 2frn_A          177 MSAYNMDNRDFPGENIADRILMGYVVRT  204 (278)
T ss_dssp             EEEECSCTTTCCCCSCEEEEEECCCSSG
T ss_pred             EEEEECCHHHhcccCCccEEEECCchhH
Confidence            9999999999877778999999999765

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.66  E-value=6.8e-16  Score=124.32  Aligned_cols=92  Identities=27%  Similarity=0.427  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhC----------------------------------------Ce
Q psy13204         50 PEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVC----------------------------------------QK   87 (189)
Q Consensus        50 ~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~----------------------------------------~~   87 (189)
                      .+.++..++.....  +..|+|+|||+|+++++++..+                                        .+
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            46777777776654  7799999999999999998763                                        46


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         88 VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        88 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      |+|+|+++.+++.|+.|+..+|+.+.+++.++|+.+......+|+|++||||+.
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~  313 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGE  313 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCC
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcC
Confidence            999999999999999999999996689999999999876678999999999985

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.66  E-value=9.7e-16  Score=125.27  Aligned_cols=106  Identities=23%  Similarity=0.335  Sum_probs=89.0

Q ss_pred             CcccCCCcccccChH---HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC
Q psy13204         37 ADNDATESWYSVTPE---KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS  111 (189)
Q Consensus        37 ~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  111 (189)
                      .+.+++..|+|.++.   .+.+.+.+.+.  ++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|++|+..+++ 
T Consensus       255 ~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-  333 (433)
T 1uwv_A          255 RLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-  333 (433)
T ss_dssp             EEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-
T ss_pred             EEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-
Confidence            577889999998754   34444545443  478999999999999999999999999999999999999999999998 


Q ss_pred             CceEEEeCCcccCCC-----CCCccEEEECCCCCCCc
Q psy13204        112 HKIQFIQGDFFALAP-----SLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       112 ~~~~~~~~d~~~~~~-----~~~~D~v~~npp~~~~~  143 (189)
                      .+++++++|+.+..+     ..+||+|++||||.+..
T Consensus       334 ~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~~  370 (433)
T 1uwv_A          334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA  370 (433)
T ss_dssp             CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCH
T ss_pred             CceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccHH
Confidence            489999999988542     35799999999998754

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.66  E-value=6.1e-16  Score=124.05  Aligned_cols=116  Identities=17%  Similarity=0.329  Sum_probs=92.2

Q ss_pred             ccchhhhhhhc-CC----cccCCCcccccChH---HHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHhCCeEEEEeCCH
Q psy13204         25 TGLEYFELTLA-DA----DNDATESWYSVTPE---KVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP   95 (189)
Q Consensus        25 ~~~~~~~~~~~-~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~   95 (189)
                      +|.+++.+.+. .+    +.+++.+|||.++.   .+...+.+.+.. +.+|||+|||+|.+++.+++.+.+|+|+|+++
T Consensus       166 ~G~~~i~e~~~~~g~~~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~  245 (369)
T 3bt7_A          166 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAK  245 (369)
T ss_dssp             SSCSEEEEECCBTTBCCEEEEETTSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCH
T ss_pred             cCCCEEEEEeccCCceEEEEECCCCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCH
Confidence            35555555442 22    44568999999985   344455555543 67899999999999999999888999999999


Q ss_pred             HHHHHHHHHHHHhCCCCceEEEeCCcccCC---CC--------------CCccEEEECCCCCC
Q psy13204         96 AKLRLAQHNASVYGVSHKIQFIQGDFFALA---PS--------------LQGDVVFLSPPWGG  141 (189)
Q Consensus        96 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~--------------~~~D~v~~npp~~~  141 (189)
                      .+++.|++|+..+++ .+++++++|+.+..   ..              ..||+|++|||+.+
T Consensus       246 ~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g  307 (369)
T 3bt7_A          246 PSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG  307 (369)
T ss_dssp             HHHHHHHHHHHHTTC-CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHcCC-CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc
Confidence            999999999999998 58999999988753   11              27999999999985

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.66  E-value=1.1e-15  Score=123.29  Aligned_cols=92  Identities=27%  Similarity=0.357  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCC----------------------------------------e
Q psy13204         50 PEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQ----------------------------------------K   87 (189)
Q Consensus        50 ~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~----------------------------------------~   87 (189)
                      .+.++..++.....  +..|+|++||+|+++++++..+.                                        +
T Consensus       186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  265 (393)
T 3k0b_A          186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN  265 (393)
T ss_dssp             CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence            46777777776644  77999999999999999987633                                        4


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         88 VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        88 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      |+|+|+++.+++.|+.|+..+|+.+.+++.++|+.+.....+||+|++||||+.
T Consensus       266 V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~  319 (393)
T 3k0b_A          266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGE  319 (393)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCC
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCcc
Confidence            999999999999999999999996679999999999876668999999999985

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.66  E-value=1.2e-15  Score=122.69  Aligned_cols=93  Identities=22%  Similarity=0.332  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCC----------------------------------------e
Q psy13204         50 PEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQ----------------------------------------K   87 (189)
Q Consensus        50 ~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~----------------------------------------~   87 (189)
                      .+.++..++.....  +..++|++||+|+++++++..+.                                        +
T Consensus       179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            36777777666544  77999999999999999987633                                        4


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204         88 VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        88 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      ++|+|+++.+++.|++|+..+|+.+.+++.++|+.+......||+|++||||+..
T Consensus       259 v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~r  313 (384)
T 3ldg_A          259 ISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGER  313 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTT
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhc
Confidence            9999999999999999999999976799999999998765689999999999853

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.65  E-value=4.4e-16  Score=125.48  Aligned_cols=104  Identities=15%  Similarity=0.177  Sum_probs=85.9

Q ss_pred             CcccCCC-----cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCC
Q psy13204         37 ADNDATE-----SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGV  110 (189)
Q Consensus        37 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~  110 (189)
                      ++.++..     +|| .++.....++...+.++.+|||+|||+|.+++.+++.++ +|+|+|+|+.+++.|++|+..+++
T Consensus       182 ~f~v~~~~~~~t~ff-~~~~~~~~~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~  260 (385)
T 2b78_A          182 SYNVFLNDGLMTGIF-LDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL  260 (385)
T ss_dssp             EEEECSSSSSCCSSC-GGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTC
T ss_pred             EEEEeccccccCCcC-CcHHHHHHHHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            5666776     888 555555566655535588999999999999999999765 899999999999999999999998


Q ss_pred             CC-ceEEEeCCcccCC-----CCCCccEEEECCCCCC
Q psy13204        111 SH-KIQFIQGDFFALA-----PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       111 ~~-~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~  141 (189)
                      .+ +++++++|+.+..     ...+||+|++|||+..
T Consensus       261 ~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~  297 (385)
T 2b78_A          261 DMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFA  297 (385)
T ss_dssp             CCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-
T ss_pred             CccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCC
Confidence            55 8999999998754     2458999999999964

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.65  E-value=1.2e-14  Score=108.85  Aligned_cols=105  Identities=13%  Similarity=0.125  Sum_probs=79.6

Q ss_pred             CCcccCCCcccccChHHHHHH-HHHhCCCCCEEEEecCC-CChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy13204         36 DADNDATESWYSVTPEKVAQH-IASRCKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSH  112 (189)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlD~g~G-~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~  112 (189)
                      ..+..++..+. ..++. ... +...++++.+|||+||| +|.++..+++. +.+|+|+|+++.+++.|++|+..+++  
T Consensus        29 ~~~~~~~~~~~-p~~~~-~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--  104 (230)
T 3evz_A           29 LDIEYHPKGLV-TTPIS-RYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--  104 (230)
T ss_dssp             CCCCCCTTSCC-CCHHH-HHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--
T ss_pred             CceecCCCeEe-CCCch-hhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--
Confidence            34555554443 33332 222 34445668999999999 99999999998 89999999999999999999999987  


Q ss_pred             ceEEEeCCcccC--CCCCCccEEEECCCCCCCcc
Q psy13204        113 KIQFIQGDFFAL--APSLQGDVVFLSPPWGGPEY  144 (189)
Q Consensus       113 ~~~~~~~d~~~~--~~~~~~D~v~~npp~~~~~~  144 (189)
                      +++++++|+...  .+..+||+|++||||.....
T Consensus       105 ~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~  138 (230)
T 3evz_A          105 NVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPL  138 (230)
T ss_dssp             CCEEEECSSCSSTTTCCSCEEEEEECCCCC----
T ss_pred             CcEEEeCCchhhhhcccCceeEEEECCCCcCCcc
Confidence            899999996433  24578999999999987544

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.65  E-value=1.5e-16  Score=113.67  Aligned_cols=118  Identities=18%  Similarity=0.285  Sum_probs=87.5

Q ss_pred             cccChHHHHHHHHHhC----CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc
Q psy13204         46 YSVTPEKVAQHIASRC----KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF  121 (189)
Q Consensus        46 ~~~~~~~~~~~~~~~~----~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~  121 (189)
                      +..+++.+.+.+...+    +++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|++++...++  +++++++|+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~   97 (171)
T 1ws6_A           20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPV   97 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCH
T ss_pred             CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccH
Confidence            5555555555554443    2588999999999999999999988899999999999999999998887  899999999


Q ss_pred             ccCCC-----CCCccEEEECCCCCCCcccccccccc--ccCcCCCCchhHHHHh
Q psy13204        122 FALAP-----SLQGDVVFLSPPWGGPEYARSSFSID--NIFPEQGGGRRLFQVA  168 (189)
Q Consensus       122 ~~~~~-----~~~~D~v~~npp~~~~~~~~~~~~~~--~~l~~~~~g~~~~~~~  168 (189)
                      .+..+     ..+||+|++||||+ .........+.  +++++  ||..++++.
T Consensus        98 ~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~~~~~L~~--gG~~~~~~~  148 (171)
T 1ws6_A           98 EVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELLASGLVEA--GGLYVLQHP  148 (171)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHHHHTCEEE--EEEEEEEEE
T ss_pred             HHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHHhhcccCC--CcEEEEEeC
Confidence            87531     34799999999998 33222222333  55643  355444443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.65  E-value=3.3e-15  Score=113.61  Aligned_cols=108  Identities=13%  Similarity=0.055  Sum_probs=80.1

Q ss_pred             CCcccCCCccccc--Ch---HHHHHHHHHhCC----CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHH
Q psy13204         36 DADNDATESWYSV--TP---EKVAQHIASRCK----ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHN  104 (189)
Q Consensus        36 ~~~~~~~~~~~~~--~~---~~~~~~~~~~~~----~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~  104 (189)
                      ..+..++..+.+.  ++   +.+...+...+.    ++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.|++|
T Consensus        29 ~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~  108 (254)
T 2h00_A           29 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKN  108 (254)
T ss_dssp             CCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHH
T ss_pred             eeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH
Confidence            3566666666653  11   223333333333    3679999999999999998876  78999999999999999999


Q ss_pred             HHHhCCCCceEEEeCCcccC----CC---CCCccEEEECCCCCCCc
Q psy13204        105 ASVYGVSHKIQFIQGDFFAL----AP---SLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       105 ~~~~~~~~~~~~~~~d~~~~----~~---~~~~D~v~~npp~~~~~  143 (189)
                      +..+++.++++++++|+.+.    .+   ..+||+|++||||....
T Consensus       109 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          109 VEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             HHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC---
T ss_pred             HHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCc
Confidence            99999865699999997652    23   25799999999998654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.65  E-value=3.7e-16  Score=120.41  Aligned_cols=102  Identities=18%  Similarity=0.125  Sum_probs=83.3

Q ss_pred             CcccCCCcccccChHHH-HHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHhCCCCc
Q psy13204         37 ADNDATESWYSVTPEKV-AQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHK  113 (189)
Q Consensus        37 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~  113 (189)
                      .+..++..||+..+... ...+...+.++.+|||+|||+|.+++.+++.+.  +|+|+|+++.+++.|++|+..+++ .+
T Consensus        92 ~f~~~~~~~f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l-~~  170 (272)
T 3a27_A           92 LFKLDVAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL-NN  170 (272)
T ss_dssp             EEEEETTTSCCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC-SS
T ss_pred             EEEEechhEEECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CC
Confidence            56778888777665221 222344466689999999999999999999844  999999999999999999999998 47


Q ss_pred             eEEEeCCcccCCCCCCccEEEECCCC
Q psy13204        114 IQFIQGDFFALAPSLQGDVVFLSPPW  139 (189)
Q Consensus       114 ~~~~~~d~~~~~~~~~~D~v~~npp~  139 (189)
                      +.++++|+.+......||+|++|||+
T Consensus       171 ~~~~~~d~~~~~~~~~~D~Vi~d~p~  196 (272)
T 3a27_A          171 VIPILADNRDVELKDVADRVIMGYVH  196 (272)
T ss_dssp             EEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred             EEEEECChHHcCccCCceEEEECCcc
Confidence            89999999988223579999999998

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.64  E-value=2.1e-15  Score=115.20  Aligned_cols=80  Identities=19%  Similarity=0.348  Sum_probs=70.9

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP  138 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp  138 (189)
                      ++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.|++|+..+++.++++++++|+.+..   +..+||+|++|||
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP  128 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP  128 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence            588999999999999999998865 999999999999999999999999767999999999875   3578999999999


Q ss_pred             CCCC
Q psy13204        139 WGGP  142 (189)
Q Consensus       139 ~~~~  142 (189)
                      |...
T Consensus       129 y~~~  132 (259)
T 3lpm_A          129 YFAT  132 (259)
T ss_dssp             C---
T ss_pred             CCCC
Confidence            9764

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.64  E-value=1e-15  Score=112.86  Aligned_cols=95  Identities=15%  Similarity=0.270  Sum_probs=75.4

Q ss_pred             cccChHHHHHHHHHhCC---CCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc
Q psy13204         46 YSVTPEKVAQHIASRCK---ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF  121 (189)
Q Consensus        46 ~~~~~~~~~~~~~~~~~---~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~  121 (189)
                      +..+++.+.+.+.+.+.   ++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|++|+..+++ .+++++++|+
T Consensus        34 ~rp~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~  112 (202)
T 2fpo_A           34 LRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNA  112 (202)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCH
T ss_pred             CCCCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCH
Confidence            44455555555544432   37899999999999999977776 4899999999999999999999988 6899999998


Q ss_pred             ccCC--CCCCccEEEECCCCCC
Q psy13204        122 FALA--PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       122 ~~~~--~~~~~D~v~~npp~~~  141 (189)
                      .+..  ...+||+|++||||+.
T Consensus       113 ~~~~~~~~~~fD~V~~~~p~~~  134 (202)
T 2fpo_A          113 MSFLAQKGTPHNIVFVDPPFRR  134 (202)
T ss_dssp             HHHHSSCCCCEEEEEECCSSST
T ss_pred             HHHHhhcCCCCCEEEECCCCCC
Confidence            8753  3468999999999874

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.63  E-value=2.8e-15  Score=116.12  Aligned_cols=93  Identities=19%  Similarity=0.273  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC
Q psy13204         51 EKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS  127 (189)
Q Consensus        51 ~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  127 (189)
                      +.+.+.+...+.  ++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|+..+++.++++++++|+.+..+ 
T Consensus       109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-  187 (284)
T 1nv8_A          109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-  187 (284)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-
T ss_pred             HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-
Confidence            455565555443  4679999999999999999998 789999999999999999999999986569999999988654 


Q ss_pred             CCc---cEEEECCCCCCCcc
Q psy13204        128 LQG---DVVFLSPPWGGPEY  144 (189)
Q Consensus       128 ~~~---D~v~~npp~~~~~~  144 (189)
                      .+|   |+|++||||.....
T Consensus       188 ~~f~~~D~IvsnPPyi~~~~  207 (284)
T 1nv8_A          188 EKFASIEMILSNPPYVKSSA  207 (284)
T ss_dssp             GGTTTCCEEEECCCCBCGGG
T ss_pred             cccCCCCEEEEcCCCCCccc
Confidence            478   99999999997554

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.62  E-value=2.7e-15  Score=120.43  Aligned_cols=91  Identities=30%  Similarity=0.339  Sum_probs=78.1

Q ss_pred             HHHHHHHHHh-CCCCCEEEEecCCCChHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204         51 EKVAQHIASR-CKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P  126 (189)
Q Consensus        51 ~~~~~~~~~~-~~~~~~vlD~g~G~G~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~  126 (189)
                      +.++..+... ..++.+|||+|||+|.+++.+++.+.  +++|+|+|+.+++.|++|+..+|+.+++++.++|+.+.. +
T Consensus       204 ~~la~~l~~~~~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~  283 (373)
T 3tm4_A          204 ASIANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY  283 (373)
T ss_dssp             HHHHHHHHHHHTCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT
T ss_pred             HHHHHHHHHhhcCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc
Confidence            4555555444 34488999999999999999999877  899999999999999999999998778999999999876 4


Q ss_pred             CCCccEEEECCCCCC
Q psy13204        127 SLQGDVVFLSPPWGG  141 (189)
Q Consensus       127 ~~~~D~v~~npp~~~  141 (189)
                      ..+||+|++||||+.
T Consensus       284 ~~~fD~Ii~npPyg~  298 (373)
T 3tm4_A          284 VDSVDFAISNLPYGL  298 (373)
T ss_dssp             CSCEEEEEEECCCC-
T ss_pred             cCCcCEEEECCCCCc
Confidence            578999999999986

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.62  E-value=1.2e-15  Score=109.92  Aligned_cols=122  Identities=17%  Similarity=0.217  Sum_probs=84.9

Q ss_pred             ccccChHHHHHHHHHhCC---CCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCC
Q psy13204         45 WYSVTPEKVAQHIASRCK---ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD  120 (189)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~---~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d  120 (189)
                      .+..+++.+.+.+.+.+.   .+.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++...++.++++++++|
T Consensus        10 ~~rp~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   89 (177)
T 2esr_A           10 ITRPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKME   89 (177)
T ss_dssp             --------CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSC
T ss_pred             CCCcCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence            344555555655555544   48899999999999999999885 58999999999999999999988885579999999


Q ss_pred             cccCC--CCCCccEEEECCCCCCCcccccccccc--ccCcCCCCchhHHHHh
Q psy13204        121 FFALA--PSLQGDVVFLSPPWGGPEYARSSFSID--NIFPEQGGGRRLFQVA  168 (189)
Q Consensus       121 ~~~~~--~~~~~D~v~~npp~~~~~~~~~~~~~~--~~l~~~~~g~~~~~~~  168 (189)
                      +.+..  ....||+|++||||...........+.  ++|++  ||..++++.
T Consensus        90 ~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~--gG~l~~~~~  139 (177)
T 2esr_A           90 AERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSE--QVMVVCETD  139 (177)
T ss_dssp             HHHHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEE--EEEEEEEEE
T ss_pred             HHHhHHhhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCC--CcEEEEEEC
Confidence            98753  335799999999995322222222232  55644  366555443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.61  E-value=2.4e-15  Score=121.60  Aligned_cols=104  Identities=19%  Similarity=0.249  Sum_probs=87.0

Q ss_pred             CcccCCC-----cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCC
Q psy13204         37 ADNDATE-----SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGV  110 (189)
Q Consensus        37 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~  110 (189)
                      .+.++..     +||+..++. ...+... .++.+|||+|||+|.+++.+++.+ .+|+|+|+++.+++.|++|+..+++
T Consensus       191 ~f~v~~~~~~~tgff~~~~~~-~~~l~~~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl  268 (396)
T 3c0k_A          191 KLLVDIQHGHKTGYYLDQRDS-RLATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKL  268 (396)
T ss_dssp             EEEECTTTSSTTSSCGGGHHH-HHHHHHH-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             EEEEeccccccCCcCcCHHHH-HHHHHHh-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            4566666     899877653 4555554 558899999999999999999985 5899999999999999999999998


Q ss_pred             -CCceEEEeCCcccCCC-----CCCccEEEECCCCCCC
Q psy13204        111 -SHKIQFIQGDFFALAP-----SLQGDVVFLSPPWGGP  142 (189)
Q Consensus       111 -~~~~~~~~~d~~~~~~-----~~~~D~v~~npp~~~~  142 (189)
                       .++++++++|+.+..+     ..+||+|++|||+...
T Consensus       269 ~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~  306 (396)
T 3c0k_A          269 DLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE  306 (396)
T ss_dssp             CGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTT
T ss_pred             CccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCC
Confidence             5589999999988752     4689999999999754

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.61  E-value=7.5e-15  Score=106.33  Aligned_cols=89  Identities=17%  Similarity=0.207  Sum_probs=74.0

Q ss_pred             HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCC
Q psy13204         52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQ  129 (189)
Q Consensus        52 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~  129 (189)
                      .....+...++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...++ .++++++++..+..  ...+
T Consensus        11 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~   89 (185)
T 3mti_A           11 MSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREP   89 (185)
T ss_dssp             HHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSC
T ss_pred             HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCC
Confidence            33445555667789999999999999999999999999999999999999999999988 68999998877642  4568


Q ss_pred             ccEEEECCCCCC
Q psy13204        130 GDVVFLSPPWGG  141 (189)
Q Consensus       130 ~D~v~~npp~~~  141 (189)
                      ||+|++|++|..
T Consensus        90 fD~v~~~~~~~~  101 (185)
T 3mti_A           90 IRAAIFNLGYLP  101 (185)
T ss_dssp             EEEEEEEEC---
T ss_pred             cCEEEEeCCCCC
Confidence            999999987755

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.60  E-value=3e-15  Score=118.36  Aligned_cols=81  Identities=21%  Similarity=0.270  Sum_probs=71.7

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCC-ceEEEeCCcccCCC-----CCCccEEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALAP-----SLQGDVVFL  135 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~-----~~~~D~v~~  135 (189)
                      .++.+|||+|||+|.+++.+++.+++|+++|+|+.+++.|++|+..+++.+ +++++++|+.+..+     ..+||+|++
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~  231 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  231 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence            347899999999999999999998899999999999999999999999854 49999999988652     468999999


Q ss_pred             CCCCCCC
Q psy13204        136 SPPWGGP  142 (189)
Q Consensus       136 npp~~~~  142 (189)
                      |||+...
T Consensus       232 dPP~~~~  238 (332)
T 2igt_A          232 DPPKFGR  238 (332)
T ss_dssp             CCCSEEE
T ss_pred             CCccccC
Confidence            9997543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.60  E-value=9.2e-15  Score=117.38  Aligned_cols=105  Identities=13%  Similarity=0.189  Sum_probs=84.4

Q ss_pred             cccCCCcccccChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCC-
Q psy13204         38 DNDATESWYSVTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSH-  112 (189)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~-  112 (189)
                      +...+..|.+...+...+.+.+.+..  +.+|||+|||+|.+++.+++.  +.+|+|+|+|+.+++.|++|+..+++.. 
T Consensus       195 ~~~~pg~Fs~~~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~  274 (375)
T 4dcm_A          195 IHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEAL  274 (375)
T ss_dssp             EEECTTCTTCSSCCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGG
T ss_pred             EEeCCCcccCCcccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcC
Confidence            34456666665555555666676654  579999999999999999998  6899999999999999999999988743 


Q ss_pred             -ceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204        113 -KIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       113 -~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                       ++++..+|+.+..+..+||+|++||||+..
T Consensus       275 ~~v~~~~~D~~~~~~~~~fD~Ii~nppfh~~  305 (375)
T 4dcm_A          275 DRCEFMINNALSGVEPFRFNAVLCNPPFHQQ  305 (375)
T ss_dssp             GGEEEEECSTTTTCCTTCEEEEEECCCC---
T ss_pred             ceEEEEechhhccCCCCCeeEEEECCCcccC
Confidence             578899999987677799999999999863

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.60  E-value=1.5e-14  Score=111.49  Aligned_cols=93  Identities=23%  Similarity=0.350  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHhC-CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC
Q psy13204         50 PEKVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP  126 (189)
Q Consensus        50 ~~~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  126 (189)
                      .+.+.+.+.+.+ .++.+|||+|||+|.+++.+++.  +.+++|+|+|+.+++.|++|+..+++. +++++++|+.+..+
T Consensus        95 te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~  173 (276)
T 2b3t_A           95 TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALA  173 (276)
T ss_dssp             HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGT
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcc
Confidence            456677777766 44779999999999999999876  679999999999999999999999884 79999999988665


Q ss_pred             CCCccEEEECCCCCCCc
Q psy13204        127 SLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       127 ~~~~D~v~~npp~~~~~  143 (189)
                      ..+||+|++||||....
T Consensus       174 ~~~fD~Iv~npPy~~~~  190 (276)
T 2b3t_A          174 GQQFAMIVSNPPYIDEQ  190 (276)
T ss_dssp             TCCEEEEEECCCCBCTT
T ss_pred             cCCccEEEECCCCCCcc
Confidence            67899999999998754

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.60  E-value=1.1e-14  Score=115.34  Aligned_cols=103  Identities=24%  Similarity=0.305  Sum_probs=84.7

Q ss_pred             CcccCCCcccccChH-HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceE
Q psy13204         37 ADNDATESWYSVTPE-KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQ  115 (189)
Q Consensus        37 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~  115 (189)
                      .+.++...+++..+. .-...+...+.++.+|||+|||+|.+++. ++.+.+|+|+|+|+.+++.|++|+..+++..+++
T Consensus       168 ~f~~d~~~~~~~~~~~~er~~i~~~~~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~  246 (336)
T 2yx1_A          168 RLWVDIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKII  246 (336)
T ss_dssp             EEEEETTTSCCCGGGHHHHHHHHHHCCTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEE
T ss_pred             EEEEehHHhccCCccHHHHHHHHHhcCCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE
Confidence            455566666665432 22234556666789999999999999999 8877799999999999999999999999866899


Q ss_pred             EEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204        116 FIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       116 ~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      ++++|+.+..  ..||+|++|||+...
T Consensus       247 ~~~~D~~~~~--~~fD~Vi~dpP~~~~  271 (336)
T 2yx1_A          247 PILSDVREVD--VKGNRVIMNLPKFAH  271 (336)
T ss_dssp             EEESCGGGCC--CCEEEEEECCTTTGG
T ss_pred             EEECChHHhc--CCCcEEEECCcHhHH
Confidence            9999999886  789999999998764

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.59  E-value=8.6e-15  Score=116.69  Aligned_cols=91  Identities=27%  Similarity=0.338  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204         51 EKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA  125 (189)
Q Consensus        51 ~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  125 (189)
                      +.++..+.....  ++..|||+|||+|.++++++..+   .+++|+|+++.+++.|++|+...++. ++++.++|+.+..
T Consensus       189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~  267 (354)
T 3tma_A          189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLP  267 (354)
T ss_dssp             HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCc
Confidence            556666666554  37799999999999999999875   89999999999999999999999985 8999999999876


Q ss_pred             -CCCCccEEEECCCCCCC
Q psy13204        126 -PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       126 -~~~~~D~v~~npp~~~~  142 (189)
                       +...||+|++||||+..
T Consensus       268 ~~~~~~D~Ii~npPyg~r  285 (354)
T 3tma_A          268 RFFPEVDRILANPPHGLR  285 (354)
T ss_dssp             GTCCCCSEEEECCCSCC-
T ss_pred             cccCCCCEEEECCCCcCc
Confidence             44568999999999863

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.58  E-value=1.4e-14  Score=116.47  Aligned_cols=102  Identities=17%  Similarity=0.172  Sum_probs=83.2

Q ss_pred             cccCCCcccccCh----HHHHHHHHHhCC----CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhC
Q psy13204         38 DNDATESWYSVTP----EKVAQHIASRCK----ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYG  109 (189)
Q Consensus        38 ~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  109 (189)
                      +...+..|++...    +.+.+.+...+.    ++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.|++|+..++
T Consensus       200 ~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~  279 (381)
T 3dmg_A          200 FHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANA  279 (381)
T ss_dssp             EEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTT
T ss_pred             EEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            4445666664432    344555544432    47899999999999999999999999999999999999999999998


Q ss_pred             CCCceEEEeCCcccCCC-CCCccEEEECCCCCC
Q psy13204        110 VSHKIQFIQGDFFALAP-SLQGDVVFLSPPWGG  141 (189)
Q Consensus       110 ~~~~~~~~~~d~~~~~~-~~~~D~v~~npp~~~  141 (189)
                      +  +++++++|+.+... ..+||+|++||||+.
T Consensus       280 ~--~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          280 L--KAQALHSDVDEALTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             C--CCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred             C--CeEEEEcchhhccccCCCeEEEEECCchhh
Confidence            7  58999999998764 478999999999996

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.58  E-value=2.4e-15  Score=115.14  Aligned_cols=104  Identities=19%  Similarity=0.184  Sum_probs=80.3

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL  128 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  128 (189)
                      +.......++++.+|||+|||+|..+..+++.    +.+|+|+|+|+.|++.|++++...+...+++++++|+.+.. ..
T Consensus        60 i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~-~~  138 (261)
T 4gek_A           60 IGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-IE  138 (261)
T ss_dssp             HHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC-CC
T ss_pred             HHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc-cc
Confidence            33444455677999999999999999999886    56899999999999999999998887678999999998874 45


Q ss_pred             CccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204        129 QGDVVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      .+|+|+++-..+.....+   ....+.+.|++
T Consensus       139 ~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lkp  170 (261)
T 4gek_A          139 NASMVVLNFTLQFLEPSERQALLDKIYQGLNP  170 (261)
T ss_dssp             SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred             ccccceeeeeeeecCchhHhHHHHHHHHHcCC
Confidence            799999976655443222   22345555533

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.58  E-value=1e-14  Score=117.94  Aligned_cols=99  Identities=28%  Similarity=0.384  Sum_probs=82.4

Q ss_pred             cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcc
Q psy13204         44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF  122 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  122 (189)
                      +||+...+ ....+....+++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.|++|+..+++.++++++++|+.
T Consensus       199 g~f~~~~~-~~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~  277 (396)
T 2as0_A          199 GFFLDQRE-NRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF  277 (396)
T ss_dssp             CCCSTTHH-HHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             CccCCHHH-HHHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHH
Confidence            68876554 3555555553689999999999999999999854 899999999999999999999998558999999998


Q ss_pred             cCCC-----CCCccEEEECCCCCCCc
Q psy13204        123 ALAP-----SLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       123 ~~~~-----~~~~D~v~~npp~~~~~  143 (189)
                      +..+     ..+||+|++|||+....
T Consensus       278 ~~~~~~~~~~~~fD~Vi~dpP~~~~~  303 (396)
T 2as0_A          278 EEMEKLQKKGEKFDIVVLDPPAFVQH  303 (396)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCSCSS
T ss_pred             HHHHHHHhhCCCCCEEEECCCCCCCC
Confidence            7642     56899999999997643

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.57  E-value=1.4e-14  Score=116.91  Aligned_cols=96  Identities=18%  Similarity=0.219  Sum_probs=78.5

Q ss_pred             cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204         44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  123 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  123 (189)
                      ++|...+. ....+....+++.+|||+|||+|.+++.+++.|+.|+++|+|+.+++.|++|+..+++.  .++.++|+.+
T Consensus       196 G~f~dqr~-~r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~  272 (393)
T 4dmg_A          196 GYYLDQRE-NRRLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALP  272 (393)
T ss_dssp             SSCGGGHH-HHHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHH
T ss_pred             CcCCCHHH-HHHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHH
Confidence            46666544 35556655556899999999999999999999889999999999999999999999984  4577999987


Q ss_pred             CC--CCCCccEEEECCCCCCC
Q psy13204        124 LA--PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       124 ~~--~~~~~D~v~~npp~~~~  142 (189)
                      ..  ....||+|++|||+...
T Consensus       273 ~l~~~~~~fD~Ii~dpP~f~~  293 (393)
T 4dmg_A          273 TLRGLEGPFHHVLLDPPTLVK  293 (393)
T ss_dssp             HHHTCCCCEEEEEECCCCCCS
T ss_pred             HHHHhcCCCCEEEECCCcCCC
Confidence            64  12349999999998553

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.57  E-value=1.7e-14  Score=106.13  Aligned_cols=106  Identities=14%  Similarity=0.152  Sum_probs=83.5

Q ss_pred             ChHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204         49 TPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        49 ~~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  124 (189)
                      +++.+...+...+.  ++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.|++++...++ .+++++++|+.+.
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  102 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEG  102 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhh
Confidence            55666666666554  48899999999999999999986  8999999999999999999999988 6899999999776


Q ss_pred             CC-CCCccEEEECCCCCCCccccccccccccCcC
Q psy13204        125 AP-SLQGDVVFLSPPWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       125 ~~-~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~  157 (189)
                      .+ ...||+|+++.+...  .......+.+++++
T Consensus       103 ~~~~~~~D~i~~~~~~~~--~~~~l~~~~~~Lkp  134 (204)
T 3e05_A          103 LDDLPDPDRVFIGGSGGM--LEEIIDAVDRRLKS  134 (204)
T ss_dssp             CTTSCCCSEEEESCCTTC--HHHHHHHHHHHCCT
T ss_pred             hhcCCCCCEEEECCCCcC--HHHHHHHHHHhcCC
Confidence            53 367999999988762  22223344555543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.57  E-value=2.3e-14  Score=105.59  Aligned_cols=77  Identities=22%  Similarity=0.350  Sum_probs=69.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      ++.+|||+|||+|.++..+++.+. +++|+|+++.+++.+++++..+++  +++++++|+.+..  .+||+|++||||+.
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~D~v~~~~p~~~  124 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVIMNPPFGS  124 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEEECCCCSS
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC--CCCCEEEEcCCCcc
Confidence            478999999999999999998865 799999999999999999988887  8999999998863  48999999999987


Q ss_pred             Cc
Q psy13204        142 PE  143 (189)
Q Consensus       142 ~~  143 (189)
                      ..
T Consensus       125 ~~  126 (207)
T 1wy7_A          125 QR  126 (207)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.56  E-value=8.5e-14  Score=100.86  Aligned_cols=98  Identities=18%  Similarity=0.315  Sum_probs=80.6

Q ss_pred             cccccC-hHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCC-ceEEEeC
Q psy13204         44 SWYSVT-PEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQG  119 (189)
Q Consensus        44 ~~~~~~-~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~  119 (189)
                      ++|+.. .+...+.+.+.+.  ++.+|||+|||+|.++..+++.+.+++|+|+++.+++.+++++...++.. +++++++
T Consensus        30 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~  109 (194)
T 1dus_A           30 GVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS  109 (194)
T ss_dssp             TSTTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC
T ss_pred             CcCCccccchHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence            444443 2234555656554  47899999999999999999888999999999999999999999888742 3999999


Q ss_pred             CcccCCCCCCccEEEECCCCCC
Q psy13204        120 DFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus       120 d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      |+.+..+...||+|++|||++.
T Consensus       110 d~~~~~~~~~~D~v~~~~~~~~  131 (194)
T 1dus_A          110 DLYENVKDRKYNKIITNPPIRA  131 (194)
T ss_dssp             STTTTCTTSCEEEEEECCCSTT
T ss_pred             chhcccccCCceEEEECCCccc
Confidence            9988766678999999999985

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.55  E-value=4.3e-14  Score=115.93  Aligned_cols=97  Identities=24%  Similarity=0.375  Sum_probs=82.1

Q ss_pred             ChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh---------------CCeEEEEeCCHHHHHHHHHHHHHhCCC
Q psy13204         49 TPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV---------------CQKVISIDIDPAKLRLAQHNASVYGVS  111 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~---------------~~~v~~vD~~~~~~~~a~~~~~~~~~~  111 (189)
                      ||..+.+.+++.+.+  +.+|+|+|||+|++++.+++.               ..+++|+|+++.+++.|+.|+...++.
T Consensus       155 TP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          155 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            677788888887754  679999999999999998764               367999999999999999999998884


Q ss_pred             C-ceEEEeCCcccCCCCCCccEEEECCCCCCCccc
Q psy13204        112 H-KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYA  145 (189)
Q Consensus       112 ~-~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~~~  145 (189)
                      . ++++.++|++.......||+|++||||......
T Consensus       235 ~~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~  269 (445)
T 2okc_A          235 TDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAG  269 (445)
T ss_dssp             SSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTT
T ss_pred             cCCCCEeeCCCCCCcccCCcCEEEECCCCCCcccc
Confidence            3 678999999887655689999999999975543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.55  E-value=1.9e-14  Score=110.13  Aligned_cols=80  Identities=18%  Similarity=0.232  Sum_probs=68.9

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHH---hCCCCceEEEeCCcccC--------CCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV---YGVSHKIQFIQGDFFAL--------APSLQ  129 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~~~~~~~d~~~~--------~~~~~  129 (189)
                      ++.+|||+|||+|.+++.+++.  +.+++|+|+++.+++.|++|+..   +++.++++++++|+.+.        .+..+
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  115 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH  115 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence            3779999999999999999988  46899999999999999999988   88855799999999887        23568


Q ss_pred             ccEEEECCCCCCC
Q psy13204        130 GDVVFLSPPWGGP  142 (189)
Q Consensus       130 ~D~v~~npp~~~~  142 (189)
                      ||+|++||||...
T Consensus       116 fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          116 FHHVIMNPPYNDA  128 (260)
T ss_dssp             EEEEEECCCC---
T ss_pred             cCEEEECCCCcCC
Confidence            9999999999875

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.55  E-value=1.3e-15  Score=112.29  Aligned_cols=91  Identities=19%  Similarity=0.224  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhC---CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204         51 EKVAQHIASRC---KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA  125 (189)
Q Consensus        51 ~~~~~~~~~~~---~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  125 (189)
                      +.+.+.+.+.+   .++.+|||+|||+|.++..+++.  +.+++|+|+++.+++.|++++...+.  +++++++|+.+..
T Consensus        15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~   92 (215)
T 4dzr_A           15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWL   92 (215)
T ss_dssp             HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhh
Confidence            34555565555   45889999999999999999998  55999999999999999999988876  7899999988754


Q ss_pred             CC-----CCccEEEECCCCCCCc
Q psy13204        126 PS-----LQGDVVFLSPPWGGPE  143 (189)
Q Consensus       126 ~~-----~~~D~v~~npp~~~~~  143 (189)
                      +.     .+||+|++||||....
T Consensus        93 ~~~~~~~~~fD~i~~npp~~~~~  115 (215)
T 4dzr_A           93 IERAERGRPWHAIVSNPPYIPTG  115 (215)
T ss_dssp             HHHHHTTCCBSEEEECCCCCC--
T ss_pred             hhhhhccCcccEEEECCCCCCCc
Confidence            44     7899999999998654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.54  E-value=1.8e-13  Score=114.36  Aligned_cols=94  Identities=18%  Similarity=0.241  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHhCC------CCCEEEEecCCCChHHHHHHHh-----CCeEEEEeCCHHHHHHHHHHHHHhCCC-CceEE
Q psy13204         49 TPEKVAQHIASRCK------ASDVVIDGFCGCGGNTIQFAAV-----CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQF  116 (189)
Q Consensus        49 ~~~~~~~~~~~~~~------~~~~vlD~g~G~G~~~~~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~  116 (189)
                      ||..+.+.|++.+.      .+.+|+|++||+|++.+.+++.     ..+++|+|+++.++..|+.|+..+|+. .++.+
T Consensus       201 TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I  280 (542)
T 3lkd_A          201 TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFL  280 (542)
T ss_dssp             CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccce
Confidence            66778888877654      3779999999999999998876     468999999999999999999999884 36899


Q ss_pred             EeCCcccC--C--CCCCccEEEECCCCCCC
Q psy13204        117 IQGDFFAL--A--PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       117 ~~~d~~~~--~--~~~~~D~v~~npp~~~~  142 (189)
                      .++|.+..  +  ....||+|++||||...
T Consensus       281 ~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~  310 (542)
T 3lkd_A          281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAK  310 (542)
T ss_dssp             EESCTTTSCSCCSSCCCBSEEEECCCTTCC
T ss_pred             EecceecccccccccccccEEEecCCcCCc
Confidence            99998876  2  35689999999999953

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.53  E-value=1.7e-14  Score=116.19  Aligned_cols=96  Identities=23%  Similarity=0.332  Sum_probs=80.0

Q ss_pred             cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204         44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  123 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  123 (189)
                      +||+...+ ....+.. + ++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|+..+++. +++++++|+.+
T Consensus       193 g~f~~~~~-~~~~~~~-~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~  268 (382)
T 1wxx_A          193 GAYLDQRE-NRLYMER-F-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFD  268 (382)
T ss_dssp             CCCGGGHH-HHHHGGG-C-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHH
T ss_pred             ccccchHH-HHHHHHh-c-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHH
Confidence            67776543 3334444 4 6889999999999999999988778999999999999999999999984 59999999988


Q ss_pred             CCC-----CCCccEEEECCCCCCCc
Q psy13204        124 LAP-----SLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       124 ~~~-----~~~~D~v~~npp~~~~~  143 (189)
                      ..+     ..+||+|++|||+...+
T Consensus       269 ~~~~~~~~~~~fD~Ii~dpP~~~~~  293 (382)
T 1wxx_A          269 LLRRLEKEGERFDLVVLDPPAFAKG  293 (382)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCSCCS
T ss_pred             HHHHHHhcCCCeeEEEECCCCCCCC
Confidence            752     56899999999997643

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.52  E-value=1.2e-13  Score=99.32  Aligned_cols=88  Identities=24%  Similarity=0.409  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC
Q psy13204         50 PEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS  127 (189)
Q Consensus        50 ~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  127 (189)
                      .+.+...+...+.  ++.+|||+|||+|.++..+++.+.+++|+|+++.+++.+++++..+++ .+++++++|+.+..+.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~   98 (183)
T 2yxd_A           20 KEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLDK   98 (183)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGGG
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccccccC
Confidence            3556666655543  378999999999999999999888999999999999999999999888 5799999999885555


Q ss_pred             CCccEEEECCC
Q psy13204        128 LQGDVVFLSPP  138 (189)
Q Consensus       128 ~~~D~v~~npp  138 (189)
                      ..||+|++++|
T Consensus        99 ~~~D~i~~~~~  109 (183)
T 2yxd_A           99 LEFNKAFIGGT  109 (183)
T ss_dssp             CCCSEEEECSC
T ss_pred             CCCcEEEECCc
Confidence            78999999988

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.52  E-value=2.5e-13  Score=100.17  Aligned_cols=91  Identities=18%  Similarity=0.241  Sum_probs=75.9

Q ss_pred             ChHHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-
Q psy13204         49 TPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-  125 (189)
Q Consensus        49 ~~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-  125 (189)
                      +++.+...+...+  .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...++.++++++++|+.+.. 
T Consensus        39 ~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~  118 (204)
T 3njr_A           39 TKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA  118 (204)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc
Confidence            4445555555544  3478999999999999999999999999999999999999999999998558999999998854 


Q ss_pred             CCCCccEEEECCCC
Q psy13204        126 PSLQGDVVFLSPPW  139 (189)
Q Consensus       126 ~~~~~D~v~~npp~  139 (189)
                      ....||+|++++..
T Consensus       119 ~~~~~D~v~~~~~~  132 (204)
T 3njr_A          119 DLPLPEAVFIGGGG  132 (204)
T ss_dssp             TSCCCSEEEECSCC
T ss_pred             cCCCCCEEEECCcc
Confidence            34579999998744

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.52  E-value=1.2e-13  Score=100.99  Aligned_cols=84  Identities=18%  Similarity=0.288  Sum_probs=72.9

Q ss_pred             HHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCcc
Q psy13204         57 IASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGD  131 (189)
Q Consensus        57 ~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D  131 (189)
                      +...++++.+|||+|||+|.++..+++.   ..+++|+|+++.+++.|++++...++..+++++++|+.+..  ...+||
T Consensus        16 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD   95 (197)
T 3eey_A           16 IKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVK   95 (197)
T ss_dssp             HHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEE
T ss_pred             HHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCce
Confidence            3445667899999999999999999887   25999999999999999999999888668999999988764  446899


Q ss_pred             EEEECCCCC
Q psy13204        132 VVFLSPPWG  140 (189)
Q Consensus       132 ~v~~npp~~  140 (189)
                      +|++|+||.
T Consensus        96 ~v~~~~~~~  104 (197)
T 3eey_A           96 AVMFNLGYL  104 (197)
T ss_dssp             EEEEEESBC
T ss_pred             EEEEcCCcc
Confidence            999999983

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.52  E-value=6.1e-15  Score=112.65  Aligned_cols=102  Identities=16%  Similarity=0.215  Sum_probs=84.9

Q ss_pred             ChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CC
Q psy13204         49 TPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PS  127 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~  127 (189)
                      .|+.+.+.+....+.+.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++       .+++++++|+.+.. ++
T Consensus        25 yp~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~   97 (257)
T 4hg2_A           25 YPRALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPP   97 (257)
T ss_dssp             CCHHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCS
T ss_pred             cHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccC
Confidence            35778888888887788999999999999999999999999999999999887532       48999999998876 77


Q ss_pred             CCccEEEECCCCCCCccccccccccccCcC
Q psy13204        128 LQGDVVFLSPPWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~~~~~~~~~~~~l~~  157 (189)
                      .+||+|++.-.+++.+.......+.++|++
T Consensus        98 ~sfD~v~~~~~~h~~~~~~~~~e~~rvLkp  127 (257)
T 4hg2_A           98 ASVDVAIAAQAMHWFDLDRFWAELRRVARP  127 (257)
T ss_dssp             SCEEEEEECSCCTTCCHHHHHHHHHHHEEE
T ss_pred             CcccEEEEeeehhHhhHHHHHHHHHHHcCC
Confidence            899999998888877655444556667744

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.52  E-value=3.1e-14  Score=102.16  Aligned_cols=105  Identities=18%  Similarity=0.134  Sum_probs=80.4

Q ss_pred             ChHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204         49 TPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        49 ~~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  124 (189)
                      +++.+...+...+.  ++.+|||+|||+|.++..+++.  +.+++++|+++.+++.|++++...++..++ ++++|..+.
T Consensus         9 t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~   87 (178)
T 3hm2_A            9 TKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRA   87 (178)
T ss_dssp             HHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGG
T ss_pred             cHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhh
Confidence            44556666655543  3779999999999999999887  678999999999999999999988885578 888998665


Q ss_pred             CCC--CCccEEEECCCCCCCccccccccccccCcC
Q psy13204        125 APS--LQGDVVFLSPPWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       125 ~~~--~~~D~v~~npp~~~~~~~~~~~~~~~~l~~  157 (189)
                      .+.  .+||+|+++.+.+.   ......+.+.+++
T Consensus        88 ~~~~~~~~D~i~~~~~~~~---~~~l~~~~~~L~~  119 (178)
T 3hm2_A           88 FDDVPDNPDVIFIGGGLTA---PGVFAAAWKRLPV  119 (178)
T ss_dssp             GGGCCSCCSEEEECC-TTC---TTHHHHHHHTCCT
T ss_pred             hhccCCCCCEEEECCcccH---HHHHHHHHHhcCC
Confidence            543  78999999988876   2222344455543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.52  E-value=5.5e-14  Score=109.64  Aligned_cols=95  Identities=24%  Similarity=0.357  Sum_probs=74.4

Q ss_pred             cccChHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204         46 YSVTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  123 (189)
Q Consensus        46 ~~~~~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  123 (189)
                      |...+. +.+.+++.+.  ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++...+. .+++++++|+.+
T Consensus        24 fl~~~~-i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~  101 (299)
T 2h1r_A           24 LLKNPG-ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIK  101 (299)
T ss_dssp             EECCHH-HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCS
T ss_pred             eecCHH-HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhh
Confidence            333443 4555555443  478999999999999999999999999999999999999999987777 589999999988


Q ss_pred             CCCCCCccEEEECCCCCCCc
Q psy13204        124 LAPSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       124 ~~~~~~~D~v~~npp~~~~~  143 (189)
                      ... ..||+|++||||+...
T Consensus       102 ~~~-~~~D~Vv~n~py~~~~  120 (299)
T 2h1r_A          102 TVF-PKFDVCTANIPYKISS  120 (299)
T ss_dssp             SCC-CCCSEEEEECCGGGHH
T ss_pred             CCc-ccCCEEEEcCCccccc
Confidence            753 4899999999998654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.51  E-value=6.5e-14  Score=102.71  Aligned_cols=73  Identities=25%  Similarity=0.357  Sum_probs=62.3

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++.      +++++++|+.+..  .+||+|++||||+.
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~~~D~v~~~~p~~~  122 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPPFGS  122 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCCC--
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC--CCeeEEEECCCchh
Confidence            478999999999999999998865 69999999999999998865      6799999998863  68999999999987


Q ss_pred             Cc
Q psy13204        142 PE  143 (189)
Q Consensus       142 ~~  143 (189)
                      ..
T Consensus       123 ~~  124 (200)
T 1ne2_A          123 VV  124 (200)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.51  E-value=8.7e-15  Score=111.14  Aligned_cols=91  Identities=26%  Similarity=0.433  Sum_probs=71.1

Q ss_pred             HHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHh---CCCCc----------
Q psy13204         53 VAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVY---GVSHK----------  113 (189)
Q Consensus        53 ~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~----------  113 (189)
                      +...+...+.  .+.+|||+|||+|.+++.+++.    +.+|+|+|+|+.+++.|+.++...   ++..+          
T Consensus        39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~  118 (250)
T 1o9g_A           39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER  118 (250)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhh
Confidence            4444444443  3679999999999999999876    578999999999999999988765   43212          


Q ss_pred             ---------------eE-------------EEeCCcccCC------CCCCccEEEECCCCCCCc
Q psy13204        114 ---------------IQ-------------FIQGDFFALA------PSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       114 ---------------~~-------------~~~~d~~~~~------~~~~~D~v~~npp~~~~~  143 (189)
                                     ++             +.++|+.+..      ...+||+|++||||....
T Consensus       119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~  182 (250)
T 1o9g_A          119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERT  182 (250)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSS
T ss_pred             cccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccc
Confidence                           56             9999998865      334899999999998643

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.51  E-value=6.7e-14  Score=106.22  Aligned_cols=106  Identities=17%  Similarity=0.244  Sum_probs=84.2

Q ss_pred             HHHHHHHHhC---CCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204         52 KVAQHIASRC---KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P  126 (189)
Q Consensus        52 ~~~~~~~~~~---~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~  126 (189)
                      .....+...+   +++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++...++.++++++++|+.+.. +
T Consensus        32 ~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (257)
T 3f4k_A           32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ  111 (257)
T ss_dssp             HHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred             HHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence            3344444544   3478999999999999999999854 999999999999999999999998667999999998765 5


Q ss_pred             CCCccEEEECCCCCCCccccccccccccCcC
Q psy13204        127 SLQGDVVFLSPPWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       127 ~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~  157 (189)
                      ..+||+|+++..++..+.......+.+++++
T Consensus       112 ~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~p  142 (257)
T 3f4k_A          112 NEELDLIWSEGAIYNIGFERGMNEWSKYLKK  142 (257)
T ss_dssp             TTCEEEEEEESCSCCCCHHHHHHHHHTTEEE
T ss_pred             CCCEEEEEecChHhhcCHHHHHHHHHHHcCC
Confidence            6789999999888876433333445556643

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.51  E-value=7.5e-15  Score=112.21  Aligned_cols=79  Identities=20%  Similarity=0.291  Sum_probs=68.3

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCH-------HHHHHHHHHHHHhCCCCceEEEeCCcccCC---CC--CCcc
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP-------AKLRLAQHNASVYGVSHKIQFIQGDFFALA---PS--LQGD  131 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~-------~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~--~~~D  131 (189)
                      +.+|||+|||+|.+++.+++.+.+|+|+|+++       .+++.|++|+..+++.++++++++|+.+..   +.  .+||
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD  163 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPD  163 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred             cCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence            68999999999999999999999999999999       999999999888877446999999998864   22  6899


Q ss_pred             EEEECCCCCCC
Q psy13204        132 VVFLSPPWGGP  142 (189)
Q Consensus       132 ~v~~npp~~~~  142 (189)
                      +|++||||...
T Consensus       164 ~V~~dP~~~~~  174 (258)
T 2r6z_A          164 IVYLDPMYPER  174 (258)
T ss_dssp             EEEECCCC---
T ss_pred             EEEECCCCCCc
Confidence            99999999764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.51  E-value=8.8e-14  Score=119.68  Aligned_cols=97  Identities=18%  Similarity=0.247  Sum_probs=79.2

Q ss_pred             cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCc
Q psy13204         44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDF  121 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~  121 (189)
                      ++|...+ .....+.... ++.+|||+|||+|.+++.+++.|+ +|+++|+|+.+++.|++|+..+++. .+++++++|+
T Consensus       522 G~f~d~r-~~r~~l~~~~-~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~  599 (703)
T 3v97_A          522 GLFLDHR-IARRMLGQMS-KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADC  599 (703)
T ss_dssp             SCCGGGH-HHHHHHHHHC-TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCH
T ss_pred             CCcccHH-HHHHHHHHhc-CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH
Confidence            3454443 3455555544 489999999999999999998876 5999999999999999999999985 4799999999


Q ss_pred             ccCC--CCCCccEEEECCCCCCC
Q psy13204        122 FALA--PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       122 ~~~~--~~~~~D~v~~npp~~~~  142 (189)
                      .++.  ...+||+|++|||+...
T Consensus       600 ~~~l~~~~~~fD~Ii~DPP~f~~  622 (703)
T 3v97_A          600 LAWLREANEQFDLIFIDPPTFSN  622 (703)
T ss_dssp             HHHHHHCCCCEEEEEECCCSBC-
T ss_pred             HHHHHhcCCCccEEEECCccccC
Confidence            8864  45689999999998653

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.51  E-value=1.2e-13  Score=99.05  Aligned_cols=73  Identities=21%  Similarity=0.207  Sum_probs=63.5

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      .++.+|||+|||+|.++..+++.+ +|+|+|+|+.+++.          ..+++++++|+.+..+..+||+|++||||..
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----------HRGGNLVRADLLCSINQESVDVVVFNPPYVP   90 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----------CSSSCEEECSTTTTBCGGGCSEEEECCCCBT
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----------ccCCeEEECChhhhcccCCCCEEEECCCCcc
Confidence            347799999999999999999999 99999999999987          2478999999988656678999999999997


Q ss_pred             Cccc
Q psy13204        142 PEYA  145 (189)
Q Consensus       142 ~~~~  145 (189)
                      ....
T Consensus        91 ~~~~   94 (170)
T 3q87_B           91 DTDD   94 (170)
T ss_dssp             TCCC
T ss_pred             CCcc
Confidence            5433

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.51  E-value=1e-13  Score=105.15  Aligned_cols=107  Identities=17%  Similarity=0.086  Sum_probs=82.7

Q ss_pred             HHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC
Q psy13204         51 EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS  127 (189)
Q Consensus        51 ~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  127 (189)
                      ......+...+  +++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|++++...++..+++++++|+.+....
T Consensus        22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  101 (256)
T 1nkv_A           22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN  101 (256)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence            33455555554  34889999999999999999887 7899999999999999999999888866899999999887656


Q ss_pred             CCccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204        128 LQGDVVFLSPPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~~~~-~~~~~~~~l~~  157 (189)
                      .+||+|++....+...... ....+.+++++
T Consensus       102 ~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkp  132 (256)
T 1nkv_A          102 EKCDVAACVGATWIAGGFAGAEELLAQSLKP  132 (256)
T ss_dssp             SCEEEEEEESCGGGTSSSHHHHHHHTTSEEE
T ss_pred             CCCCEEEECCChHhcCCHHHHHHHHHHHcCC
Confidence            7899999966655433222 33445566644

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.51  E-value=1.6e-13  Score=118.03  Aligned_cols=91  Identities=26%  Similarity=0.373  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhC-------------------------------------------
Q psy13204         51 EKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVC-------------------------------------------   85 (189)
Q Consensus        51 ~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~-------------------------------------------   85 (189)
                      +.++..++.....  +..|+|++||+|+++++++..+                                           
T Consensus       176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~  255 (703)
T 3v97_A          176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY  255 (703)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence            6777777776653  7799999999999999998752                                           


Q ss_pred             -CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC---CCccEEEECCCCCC
Q psy13204         86 -QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS---LQGDVVFLSPPWGG  141 (189)
Q Consensus        86 -~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~D~v~~npp~~~  141 (189)
                       .+++|+|+++.+++.|+.|+..+|+.+.+++.++|+.+..+.   ..+|+|++||||+.
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~  315 (703)
T 3v97_A          256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGE  315 (703)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC
T ss_pred             CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccc
Confidence             479999999999999999999999966699999999987522   27999999999975

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.50  E-value=7e-14  Score=111.01  Aligned_cols=92  Identities=21%  Similarity=0.216  Sum_probs=75.4

Q ss_pred             cChHHHHHHHHHhC----C--CCCEEEEecCCCChHHHHHHHhC-------CeEEEEeCCHHHHHHHHHHHHHhCCCCce
Q psy13204         48 VTPEKVAQHIASRC----K--ASDVVIDGFCGCGGNTIQFAAVC-------QKVISIDIDPAKLRLAQHNASVYGVSHKI  114 (189)
Q Consensus        48 ~~~~~~~~~~~~~~----~--~~~~vlD~g~G~G~~~~~~~~~~-------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~  114 (189)
                      .||..+...+...+    .  .+.+|+|+|||+|.+++.+++..       .+++|+|+++.+++.|+.|+...++  ++
T Consensus       109 ~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~  186 (344)
T 2f8l_A          109 MTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KM  186 (344)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CC
T ss_pred             CChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--Cc
Confidence            36666655543322    2  36799999999999999998763       6899999999999999999998887  78


Q ss_pred             EEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204        115 QFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus       115 ~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      +++++|++.......||+|++||||+.
T Consensus       187 ~i~~~D~l~~~~~~~fD~Ii~NPPfg~  213 (344)
T 2f8l_A          187 TLLHQDGLANLLVDPVDVVISDLPVGY  213 (344)
T ss_dssp             EEEESCTTSCCCCCCEEEEEEECCCSE
T ss_pred             eEEECCCCCccccCCccEEEECCCCCC
Confidence            999999988666678999999999865

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.50  E-value=6.5e-14  Score=107.15  Aligned_cols=104  Identities=17%  Similarity=0.221  Sum_probs=83.5

Q ss_pred             HHHHHHhC---CCCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204         54 AQHIASRC---KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL  128 (189)
Q Consensus        54 ~~~~~~~~---~~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~  128 (189)
                      ...+...+   +++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++...++.++++++++|+.+.. +..
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (267)
T 3kkz_A           34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNE  113 (267)
T ss_dssp             HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred             HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCC
Confidence            44444444   348899999999999999999884 4999999999999999999999998767999999998875 567


Q ss_pred             CccEEEECCCCCCCccccccccccccCcC
Q psy13204        129 QGDVVFLSPPWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~~~~~~~~~l~~  157 (189)
                      +||+|+++.+++..+.......+.+++++
T Consensus       114 ~fD~i~~~~~~~~~~~~~~l~~~~~~Lkp  142 (267)
T 3kkz_A          114 ELDLIWSEGAIYNIGFERGLNEWRKYLKK  142 (267)
T ss_dssp             CEEEEEESSCGGGTCHHHHHHHHGGGEEE
T ss_pred             CEEEEEEcCCceecCHHHHHHHHHHHcCC
Confidence            89999999988876433334455666644

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.49  E-value=1.7e-13  Score=106.22  Aligned_cols=91  Identities=20%  Similarity=0.271  Sum_probs=76.5

Q ss_pred             HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204         52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ  129 (189)
Q Consensus        52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  129 (189)
                      .+.+.+++.+.  ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++....+...+++++++|+.+... ..
T Consensus        15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~-~~   93 (285)
T 1zq9_A           15 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-PF   93 (285)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-CC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc-hh
Confidence            45566666554  3789999999999999999999999999999999999999998766654589999999988642 37


Q ss_pred             ccEEEECCCCCCCc
Q psy13204        130 GDVVFLSPPWGGPE  143 (189)
Q Consensus       130 ~D~v~~npp~~~~~  143 (189)
                      ||+|++|+||+...
T Consensus        94 fD~vv~nlpy~~~~  107 (285)
T 1zq9_A           94 FDTCVANLPYQISS  107 (285)
T ss_dssp             CSEEEEECCGGGHH
T ss_pred             hcEEEEecCcccch
Confidence            99999999998753

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.49  E-value=1.4e-13  Score=106.86  Aligned_cols=90  Identities=22%  Similarity=0.237  Sum_probs=75.6

Q ss_pred             HHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CC
Q psy13204         51 EKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PS  127 (189)
Q Consensus        51 ~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~  127 (189)
                      ..+.+.+++.+.  ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++..  . .+++++++|+.+.. +.
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~--~-~~v~vi~gD~l~~~~~~  112 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL--Y-NNIEIIWGDALKVDLNK  112 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH--C-SSEEEEESCTTTSCGGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc--C-CCeEEEECchhhCCccc
Confidence            345666666554  478999999999999999999999999999999999999999872  2 48999999999875 44


Q ss_pred             CCccEEEECCCCCCCc
Q psy13204        128 LQGDVVFLSPPWGGPE  143 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~  143 (189)
                      ..||+|++|+||+...
T Consensus       113 ~~fD~Iv~NlPy~is~  128 (295)
T 3gru_A          113 LDFNKVVANLPYQISS  128 (295)
T ss_dssp             SCCSEEEEECCGGGHH
T ss_pred             CCccEEEEeCcccccH
Confidence            5799999999998644

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.48  E-value=8.2e-14  Score=106.12  Aligned_cols=93  Identities=18%  Similarity=0.199  Sum_probs=74.7

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  140 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~  140 (189)
                      .++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++...++ .+++++++|+.+.. ++.+||+|+++-..+
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFHIVTCRIAAH  114 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence            3488999999999999999999988999999999999999999988887 47999999998865 567899999986666


Q ss_pred             CCcccc-ccccccccC
Q psy13204        141 GPEYAR-SSFSIDNIF  155 (189)
Q Consensus       141 ~~~~~~-~~~~~~~~l  155 (189)
                      +..... ....+.++|
T Consensus       115 ~~~d~~~~l~~~~r~L  130 (260)
T 1vl5_A          115 HFPNPASFVSEAYRVL  130 (260)
T ss_dssp             GCSCHHHHHHHHHHHE
T ss_pred             hcCCHHHHHHHHHHHc
Confidence            543222 223344455

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.48  E-value=1.4e-13  Score=115.29  Aligned_cols=95  Identities=23%  Similarity=0.355  Sum_probs=78.6

Q ss_pred             ChHHHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHh-----------------CCeEEEEeCCHHHHHHHHHHHHHhCC
Q psy13204         49 TPEKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAV-----------------CQKVISIDIDPAKLRLAQHNASVYGV  110 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~-----------------~~~v~~vD~~~~~~~~a~~~~~~~~~  110 (189)
                      ||..+.+.|++.+.+ ..+|+|++||+|++.+.+++.                 ..+++|+|+++.+++.|+.|+..+|+
T Consensus       229 TP~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi  308 (544)
T 3khk_A          229 TPKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI  308 (544)
T ss_dssp             CCHHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC
Confidence            677889998888765 349999999999999888542                 34799999999999999999999998


Q ss_pred             CCceEEEeCCcccCC--CCCCccEEEECCCCCCCc
Q psy13204        111 SHKIQFIQGDFFALA--PSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       111 ~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~~~  143 (189)
                      ..++.+.++|.+...  +...||+|++||||....
T Consensus       309 ~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~  343 (544)
T 3khk_A          309 DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKD  343 (544)
T ss_dssp             CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCS
T ss_pred             CcccceeccchhcCcccccccccEEEECCCcCCcc
Confidence            555555899987654  446899999999999743

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.48  E-value=2.5e-14  Score=105.43  Aligned_cols=95  Identities=14%  Similarity=0.169  Sum_probs=72.9

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh------------CCCCceEEEeCCcccCCCC--
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY------------GVSHKIQFIQGDFFALAPS--  127 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------~~~~~~~~~~~d~~~~~~~--  127 (189)
                      +++.+|||+|||+|..+..+++.|.+|+|+|+|+.|++.|+++....            .. .+++++++|+.+....  
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~l~~~~~   99 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA-PGIEIWCGDFFALTARDI   99 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEEC-SSSEEEEECCSSSTHHHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccC-CccEEEECccccCCcccC
Confidence            45889999999999999999999999999999999999998876431            11 4789999999988632  


Q ss_pred             CCccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204        128 LQGDVVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      .+||+|++.-.++......   ....+.++|++
T Consensus       100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp  132 (203)
T 1pjz_A          100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQ  132 (203)
T ss_dssp             HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS
T ss_pred             CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC
Confidence            6899999876666543222   12345556644

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.47  E-value=4.8e-14  Score=113.25  Aligned_cols=113  Identities=19%  Similarity=0.203  Sum_probs=81.1

Q ss_pred             ccccChHHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHH-------HHhCC-CC
Q psy13204         45 WYSVTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHNA-------SVYGV-SH  112 (189)
Q Consensus        45 ~~~~~~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~~~-------~~~~~-~~  112 (189)
                      .|-.+.......++..+  .++.+|+|+|||+|..++.++.. +. +|+|||+++.+++.|+++.       ..+|+ ..
T Consensus       153 vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~  232 (438)
T 3uwp_A          153 VYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA  232 (438)
T ss_dssp             GGGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCC
T ss_pred             ccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            34444444455555544  45889999999999999999865 55 5999999999999998765       34565 25


Q ss_pred             ceEEEeCCcccCC-CC--CCccEEEECCCCCCCccccccccccccCcC
Q psy13204        113 KIQFIQGDFFALA-PS--LQGDVVFLSPPWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       113 ~~~~~~~d~~~~~-~~--~~~D~v~~npp~~~~~~~~~~~~~~~~l~~  157 (189)
                      +++++++|+.+.. ..  ..+|+|++|+++...+....+..+.+.|++
T Consensus       233 rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKP  280 (438)
T 3uwp_A          233 EYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKE  280 (438)
T ss_dssp             EEEEEECCTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCT
T ss_pred             CeEEEECcccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCC
Confidence            8999999998864 21  379999999998654433333445556654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.47  E-value=5.3e-14  Score=103.95  Aligned_cols=105  Identities=20%  Similarity=0.165  Sum_probs=81.6

Q ss_pred             HHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204         52 KVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL  128 (189)
Q Consensus        52 ~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~  128 (189)
                      .+.+.+...+.. +.+|||+|||+|.++..+++. +.+++|+|+++.+++.|++++...++..+++++++|+.+.. +..
T Consensus        31 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  110 (219)
T 3dlc_A           31 IIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN  110 (219)
T ss_dssp             HHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence            445555555432 349999999999999999987 77999999999999999999999988668999999998865 567


Q ss_pred             CccEEEECCCCCCCcccc-ccccccccCc
Q psy13204        129 QGDVVFLSPPWGGPEYAR-SSFSIDNIFP  156 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~-~~~~~~~~l~  156 (189)
                      +||+|+++..++...... ....+.++++
T Consensus       111 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~  139 (219)
T 3dlc_A          111 YADLIVSRGSVFFWEDVATAFREIYRILK  139 (219)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEE
T ss_pred             cccEEEECchHhhccCHHHHHHHHHHhCC
Confidence            899999988877643222 2233444553

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.47  E-value=5.3e-13  Score=103.88  Aligned_cols=85  Identities=9%  Similarity=0.042  Sum_probs=74.7

Q ss_pred             HHHHhC--CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccE
Q psy13204         56 HIASRC--KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDV  132 (189)
Q Consensus        56 ~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~  132 (189)
                      .+...+  +++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....++.++++++++|+.+.  ..+||+
T Consensus        63 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~fD~  140 (302)
T 3hem_A           63 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDR  140 (302)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSE
T ss_pred             HHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCccE
Confidence            344443  44789999999999999999988 8999999999999999999999999866899999999887  678999


Q ss_pred             EEECCCCCCC
Q psy13204        133 VFLSPPWGGP  142 (189)
Q Consensus       133 v~~npp~~~~  142 (189)
                      |+++..++..
T Consensus       141 v~~~~~~~~~  150 (302)
T 3hem_A          141 IVSLGAFEHF  150 (302)
T ss_dssp             EEEESCGGGT
T ss_pred             EEEcchHHhc
Confidence            9998887765

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.47  E-value=2.2e-13  Score=103.86  Aligned_cols=117  Identities=19%  Similarity=0.235  Sum_probs=80.5

Q ss_pred             CEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh-------C-CCCceEEEeCCcccCCC--CCCccEEE
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY-------G-VSHKIQFIQGDFFALAP--SLQGDVVF  134 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~-~~~~~~~~~~d~~~~~~--~~~~D~v~  134 (189)
                      .+|||+|||+|..++.+++.|++|+++|+++.+.+.+++++...       + +..+++++++|+.++++  ...||+|+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~  169 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence            89999999999999999999999999999999877777765432       2 22378999999988652  23699999


Q ss_pred             ECCCCCCCcccc----ccc---cccccCcCCCCchhHHHHhhhcC-CceEEEcCCCCC
Q psy13204        135 LSPPWGGPEYAR----SSF---SIDNIFPEQGGGRRLFQVARGIS-PNVGYYLPRTSD  184 (189)
Q Consensus       135 ~npp~~~~~~~~----~~~---~~~~~l~~~~~g~~~~~~~~~~~-~~~~~~lp~~~~  184 (189)
                      +||||.......    .+.   .+...-++   .-.+++...+.. ...++..|+...
T Consensus       170 lDP~y~~~~~saavkk~~~~lr~l~~~~~~---~~~ll~~a~~~a~~rvvVK~p~~~~  224 (258)
T 2oyr_A          170 LDPMFPHKQKSALVKKEMRVFQSLVGPDLD---ADGLLEPARLLATKRVVVKRPDYAP  224 (258)
T ss_dssp             ECCCCCCCCC-----HHHHHHHHHSCCCTT---GGGGHHHHHHHCSSEEEEEEETTCC
T ss_pred             EcCCCCCcccchHHHHHHHHHHHhhcCCcc---HHHHHHHHHHhcCCeEEEEeCCCCh
Confidence            999997643221    000   11111111   224455555554 567777777654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.47  E-value=8.4e-13  Score=97.05  Aligned_cols=103  Identities=17%  Similarity=0.097  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204         51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ  129 (189)
Q Consensus        51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  129 (189)
                      ..+.+.+...++++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|++++...++. +++++++|+.+.. ..+
T Consensus        48 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-~~~  125 (205)
T 3grz_A           48 QLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLADV-DGK  125 (205)
T ss_dssp             HHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTTTC-CSC
T ss_pred             HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeccccccC-CCC
Confidence            345555555566789999999999999999998855 8999999999999999999999884 4999999998864 478


Q ss_pred             ccEEEECCCCCCCccccccccccccCcC
Q psy13204        130 GDVVFLSPPWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       130 ~D~v~~npp~~~~~~~~~~~~~~~~l~~  157 (189)
                      ||+|++++|++..  ......+.+++++
T Consensus       126 fD~i~~~~~~~~~--~~~l~~~~~~L~~  151 (205)
T 3grz_A          126 FDLIVANILAEIL--LDLIPQLDSHLNE  151 (205)
T ss_dssp             EEEEEEESCHHHH--HHHGGGSGGGEEE
T ss_pred             ceEEEECCcHHHH--HHHHHHHHHhcCC
Confidence            9999999988642  1223345556643

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.46  E-value=4.2e-13  Score=101.21  Aligned_cols=82  Identities=13%  Similarity=0.079  Sum_probs=72.3

Q ss_pred             HHHHHHhCCCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC-Cc
Q psy13204         54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QG  130 (189)
Q Consensus        54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~  130 (189)
                      .+.++..++++.+|+|+|||+|.+++.+++.+  .+|+|+|+++.+++.|++|+..+++.++++++++|..+..... .|
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~   91 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAI   91 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccc
Confidence            45567778889999999999999999999985  3799999999999999999999999777999999999887544 59


Q ss_pred             cEEEE
Q psy13204        131 DVVFL  135 (189)
Q Consensus       131 D~v~~  135 (189)
                      |+|++
T Consensus        92 D~Ivi   96 (244)
T 3gnl_A           92 DTIVI   96 (244)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            99886

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.46  E-value=5e-13  Score=99.76  Aligned_cols=82  Identities=17%  Similarity=0.122  Sum_probs=71.5

Q ss_pred             HHHHHHhCCCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC-Cc
Q psy13204         54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QG  130 (189)
Q Consensus        54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~  130 (189)
                      .+.+...++++.+|+|+|||+|.+++.+++.+  .+|+|+|+++.+++.|++|+..+++.++++++++|.++..+.. .|
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~   85 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQV   85 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCC
Confidence            34566777878999999999999999999985  4799999999999999999999999778999999998766544 69


Q ss_pred             cEEEE
Q psy13204        131 DVVFL  135 (189)
Q Consensus       131 D~v~~  135 (189)
                      |+|++
T Consensus        86 D~Ivi   90 (225)
T 3kr9_A           86 SVITI   90 (225)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            98886

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.46  E-value=4e-14  Score=106.32  Aligned_cols=92  Identities=17%  Similarity=0.232  Sum_probs=75.2

Q ss_pred             HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCcc
Q psy13204         52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD  131 (189)
Q Consensus        52 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  131 (189)
                      .+...+.....++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++....+...+++++++|+.+..+..+||
T Consensus        55 ~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  134 (235)
T 3lcc_A           55 LIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFD  134 (235)
T ss_dssp             HHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEE
T ss_pred             HHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCee
Confidence            34444433322356999999999999999999899999999999999999999876544457999999999987667999


Q ss_pred             EEEECCCCCCCc
Q psy13204        132 VVFLSPPWGGPE  143 (189)
Q Consensus       132 ~v~~npp~~~~~  143 (189)
                      +|+++..++...
T Consensus       135 ~v~~~~~l~~~~  146 (235)
T 3lcc_A          135 LIFDYVFFCAIE  146 (235)
T ss_dssp             EEEEESSTTTSC
T ss_pred             EEEEChhhhcCC
Confidence            999988887654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.46  E-value=1.4e-13  Score=107.75  Aligned_cols=101  Identities=9%  Similarity=0.103  Sum_probs=81.0

Q ss_pred             HHHHhCC---CCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCc
Q psy13204         56 HIASRCK---ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG  130 (189)
Q Consensus        56 ~~~~~~~---~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  130 (189)
                      .+.+.+.   ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|++++...++..+++++++|+.+.. +..+|
T Consensus       107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  186 (312)
T 3vc1_A          107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAV  186 (312)
T ss_dssp             HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCE
T ss_pred             HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCE
Confidence            3445444   3789999999999999999988 99999999999999999999999998668999999998875 56789


Q ss_pred             cEEEECCCCCCCccccccccccccCc
Q psy13204        131 DVVFLSPPWGGPEYARSSFSIDNIFP  156 (189)
Q Consensus       131 D~v~~npp~~~~~~~~~~~~~~~~l~  156 (189)
                      |+|+++-.++..+.......+.++|+
T Consensus       187 D~V~~~~~l~~~~~~~~l~~~~~~Lk  212 (312)
T 3vc1_A          187 TASWNNESTMYVDLHDLFSEHSRFLK  212 (312)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHEE
T ss_pred             eEEEECCchhhCCHHHHHHHHHHHcC
Confidence            99999877666542223334445553

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=99.46  E-value=6.5e-13  Score=110.93  Aligned_cols=94  Identities=21%  Similarity=0.346  Sum_probs=78.6

Q ss_pred             ChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh---------------CCeEEEEeCCHHHHHHHHHHHHHhCCC
Q psy13204         49 TPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV---------------CQKVISIDIDPAKLRLAQHNASVYGVS  111 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~---------------~~~v~~vD~~~~~~~~a~~~~~~~~~~  111 (189)
                      ||..+.+.|++.+.+  +.+|+|++||+|++.+.+.+.               ...++|+|+++.++..|+.|+..+|. 
T Consensus       201 TP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~-  279 (530)
T 3ufb_A          201 TPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL-  279 (530)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC-
T ss_pred             CcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC-
Confidence            677899999988866  779999999999999888653               24689999999999999999999998 


Q ss_pred             CceEEEeCCcccCC-----CCCCccEEEECCCCCCCc
Q psy13204        112 HKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       112 ~~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~~~  143 (189)
                      ....+.++|.+...     ...+||+|++||||....
T Consensus       280 ~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~  316 (530)
T 3ufb_A          280 EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEE  316 (530)
T ss_dssp             SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBC
T ss_pred             ccccccccccccCchhhhcccccceEEEecCCCCccc
Confidence            46688899987653     234799999999998644

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.46  E-value=5.9e-13  Score=99.58  Aligned_cols=82  Identities=15%  Similarity=0.067  Sum_probs=72.3

Q ss_pred             HHHHHHhCCCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC-Cc
Q psy13204         54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QG  130 (189)
Q Consensus        54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~  130 (189)
                      .+.+...++++.+|+|+|||+|.+++.+++.+  .+|+|+|+++.+++.|++|+..+++.++++++++|..+..... .|
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~   91 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNI   91 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccccccc
Confidence            45567778889999999999999999999985  3799999999999999999999999778999999999887543 79


Q ss_pred             cEEEE
Q psy13204        131 DVVFL  135 (189)
Q Consensus       131 D~v~~  135 (189)
                      |+|++
T Consensus        92 D~Ivi   96 (230)
T 3lec_A           92 DTITI   96 (230)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            99875

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.45  E-value=1.2e-13  Score=106.68  Aligned_cols=95  Identities=21%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~  140 (189)
                      .+.+|||+|||+|.++..+++.+.+++|+|+++.+++.|++++...++..+++++++|+.+..  ...+||+|+++-.++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~  147 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE  147 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence            377999999999999999999999999999999999999999998888668999999998876  567899999987776


Q ss_pred             CCcccc-ccccccccCcC
Q psy13204        141 GPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       141 ~~~~~~-~~~~~~~~l~~  157 (189)
                      ...... ....+.++|++
T Consensus       148 ~~~~~~~~l~~~~~~Lkp  165 (285)
T 4htf_A          148 WVADPRSVLQTLWSVLRP  165 (285)
T ss_dssp             GCSCHHHHHHHHHHTEEE
T ss_pred             cccCHHHHHHHHHHHcCC
Confidence            654333 33345556644

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.45  E-value=1.3e-13  Score=106.54  Aligned_cols=93  Identities=15%  Similarity=0.066  Sum_probs=78.5

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...++  +++++++|+.+.....+||+|+++.+++..
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~i~~~~~~~~~  197 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIVSTVVFMFL  197 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEEEEECSSGGGS
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccEEEEccchhhC
Confidence            488999999999999999999999999999999999999999998887  899999999987666789999999998865


Q ss_pred             cccc---ccccccccCcC
Q psy13204        143 EYAR---SSFSIDNIFPE  157 (189)
Q Consensus       143 ~~~~---~~~~~~~~l~~  157 (189)
                      ....   ....+.+++++
T Consensus       198 ~~~~~~~~l~~~~~~Lkp  215 (286)
T 3m70_A          198 NRERVPSIIKNMKEHTNV  215 (286)
T ss_dssp             CGGGHHHHHHHHHHTEEE
T ss_pred             CHHHHHHHHHHHHHhcCC
Confidence            4333   22334555543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.45  E-value=1.4e-12  Score=98.97  Aligned_cols=86  Identities=21%  Similarity=0.263  Sum_probs=74.5

Q ss_pred             HHHHHhC--CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204         55 QHIASRC--KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ  129 (189)
Q Consensus        55 ~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  129 (189)
                      ..+...+  .++.+|||+|||+|.++..+++.   +.+++++|+++.+++.|++++...++.++++++++|+.+..+..+
T Consensus        83 ~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  162 (255)
T 3mb5_A           83 ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEEN  162 (255)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCS
T ss_pred             HHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCC
Confidence            3444444  34889999999999999999988   689999999999999999999999986569999999998777778


Q ss_pred             ccEEEECCCCC
Q psy13204        130 GDVVFLSPPWG  140 (189)
Q Consensus       130 ~D~v~~npp~~  140 (189)
                      ||+|++|+|..
T Consensus       163 ~D~v~~~~~~~  173 (255)
T 3mb5_A          163 VDHVILDLPQP  173 (255)
T ss_dssp             EEEEEECSSCG
T ss_pred             cCEEEECCCCH
Confidence            99999998854

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.45  E-value=4.7e-13  Score=102.50  Aligned_cols=105  Identities=17%  Similarity=0.255  Sum_probs=83.5

Q ss_pred             HHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204         53 VAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL  128 (189)
Q Consensus        53 ~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~  128 (189)
                      +...+.+.+.  ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++...++.++++++++|+.+.. +..
T Consensus        49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  128 (273)
T 3bus_A           49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA  128 (273)
T ss_dssp             HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence            4455555553  4889999999999999999886 88999999999999999999998888668999999998865 557


Q ss_pred             CccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204        129 QGDVVFLSPPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~-~~~~~~~~l~~  157 (189)
                      +||+|++...+++..... ....+.+++++
T Consensus       129 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p  158 (273)
T 3bus_A          129 SFDAVWALESLHHMPDRGRALREMARVLRP  158 (273)
T ss_dssp             CEEEEEEESCTTTSSCHHHHHHHHHTTEEE
T ss_pred             CccEEEEechhhhCCCHHHHHHHHHHHcCC
Confidence            899999988888764333 23345556643

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.45  E-value=3.9e-13  Score=102.42  Aligned_cols=102  Identities=23%  Similarity=0.180  Sum_probs=79.0

Q ss_pred             cccCCCcccccCh----HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCc
Q psy13204         38 DNDATESWYSVTP----EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHK  113 (189)
Q Consensus        38 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~  113 (189)
                      +.+++..+|+...    ..+.+.+...+.++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|+..+++.  
T Consensus        91 ~~l~p~~~fgtg~~~tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~--  168 (254)
T 2nxc_A           91 LVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR--  168 (254)
T ss_dssp             EECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC--
T ss_pred             EEECCCccccCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc--
Confidence            4556666555432    2344555555666899999999999999999999889999999999999999999999883  


Q ss_pred             eEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204        114 IQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus       114 ~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      +++.++|+.+..+..+||+|++|++.+.
T Consensus       169 v~~~~~d~~~~~~~~~fD~Vv~n~~~~~  196 (254)
T 2nxc_A          169 PRFLEGSLEAALPFGPFDLLVANLYAEL  196 (254)
T ss_dssp             CEEEESCHHHHGGGCCEEEEEEECCHHH
T ss_pred             EEEEECChhhcCcCCCCCEEEECCcHHH
Confidence            8999999887544568999999987653

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.45  E-value=1.5e-12  Score=96.79  Aligned_cols=105  Identities=21%  Similarity=0.253  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCC
Q psy13204         51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQ  129 (189)
Q Consensus        51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~  129 (189)
                      +.+.+.+...++++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++....+  .+++++++|+.+.. +..+
T Consensus        26 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~  103 (227)
T 1ve3_A           26 ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKT  103 (227)
T ss_dssp             HHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTC
T ss_pred             HHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCCCc
Confidence            44556666667778899999999999999999998899999999999999999988776  38999999998865 5568


Q ss_pred             ccEEEECCC--CCCCcccc-ccccccccCcC
Q psy13204        130 GDVVFLSPP--WGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       130 ~D~v~~npp--~~~~~~~~-~~~~~~~~l~~  157 (189)
                      ||+|+++++  +....... ....+.+++++
T Consensus       104 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~  134 (227)
T 1ve3_A          104 FDYVIFIDSIVHFEPLELNQVFKEVRRVLKP  134 (227)
T ss_dssp             EEEEEEESCGGGCCHHHHHHHHHHHHHHEEE
T ss_pred             EEEEEEcCchHhCCHHHHHHHHHHHHHHcCC
Confidence            999999999  54432211 22344555543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.44  E-value=2.5e-13  Score=99.54  Aligned_cols=81  Identities=19%  Similarity=0.133  Sum_probs=69.5

Q ss_pred             HHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccE
Q psy13204         54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDV  132 (189)
Q Consensus        54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~  132 (189)
                      ...++..++++ +|||+|||+|.++..+++.+.+++|+|+++.+++.|+++....+.  +++++++|+.+.. +..+||+
T Consensus        21 l~~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~   97 (202)
T 2kw5_A           21 LVSVANQIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEG   97 (202)
T ss_dssp             HHHHHHHSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSE
T ss_pred             HHHHHHhCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccE
Confidence            33344556667 999999999999999999999999999999999999999988876  8899999998875 5568999


Q ss_pred             EEECC
Q psy13204        133 VFLSP  137 (189)
Q Consensus       133 v~~np  137 (189)
                      |+++.
T Consensus        98 v~~~~  102 (202)
T 2kw5_A           98 IVSIF  102 (202)
T ss_dssp             EEEEC
T ss_pred             EEEEh
Confidence            99964

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.44  E-value=5.4e-13  Score=101.66  Aligned_cols=86  Identities=20%  Similarity=0.203  Sum_probs=71.2

Q ss_pred             HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C--
Q psy13204         52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P--  126 (189)
Q Consensus        52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~--  126 (189)
                      .+.+.+++.+.  ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++..  . .+++++++|+.+.. +  
T Consensus        16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~-~~v~~i~~D~~~~~~~~~   92 (255)
T 3tqs_A           16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--Q-KNITIYQNDALQFDFSSV   92 (255)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--C-TTEEEEESCTTTCCGGGS
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--C-CCcEEEEcchHhCCHHHh
Confidence            35555555543  478999999999999999999999999999999999999998764  2 58999999999875 2  


Q ss_pred             --CCCccEEEECCCCCC
Q psy13204        127 --SLQGDVVFLSPPWGG  141 (189)
Q Consensus       127 --~~~~D~v~~npp~~~  141 (189)
                        ...+| |++||||..
T Consensus        93 ~~~~~~~-vv~NlPY~i  108 (255)
T 3tqs_A           93 KTDKPLR-VVGNLPYNI  108 (255)
T ss_dssp             CCSSCEE-EEEECCHHH
T ss_pred             ccCCCeE-EEecCCccc
Confidence              24577 899999975

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.43  E-value=1.2e-13  Score=102.93  Aligned_cols=79  Identities=19%  Similarity=0.313  Sum_probs=68.6

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CC----CCccE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PS----LQGDV  132 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~----~~~D~  132 (189)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|++++...++.++++++++|+.+..   ..    .+||+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~  137 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  137 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence            3789999999999999999985   67999999999999999999999998667999999986643   21    58999


Q ss_pred             EEECCCCCC
Q psy13204        133 VFLSPPWGG  141 (189)
Q Consensus       133 v~~npp~~~  141 (189)
                      |++|.+.+.
T Consensus       138 V~~d~~~~~  146 (221)
T 3u81_A          138 VFLDHWKDR  146 (221)
T ss_dssp             EEECSCGGG
T ss_pred             EEEcCCccc
Confidence            999976654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.43  E-value=7.6e-13  Score=98.07  Aligned_cols=78  Identities=21%  Similarity=0.112  Sum_probs=69.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP  137 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~np  137 (189)
                      .+.+|||+|||+|.++..+++.  +.+++|+|+++.+++.|++++...++ .+++++++|+.+..   +..+||+|++++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~~  119 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNF  119 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence            4789999999999999999987  57999999999999999999999988 68999999998753   456899999998


Q ss_pred             CCCC
Q psy13204        138 PWGG  141 (189)
Q Consensus       138 p~~~  141 (189)
                      |-.+
T Consensus       120 ~~~~  123 (214)
T 1yzh_A          120 SDPW  123 (214)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            8543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.43  E-value=4.5e-13  Score=97.64  Aligned_cols=80  Identities=19%  Similarity=0.115  Sum_probs=71.3

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      ++.+|||+|||+|.++..+++.+.+++|+|+++.+++.+++++...++ .+++++++|+.+.....+||+|+++.+++..
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~  110 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNLTFDRQYDFILSTVVLMFL  110 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGCCCCCCEEEEEEESCGGGS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhCCCCCCceEEEEcchhhhC
Confidence            377999999999999999999999999999999999999999988887 4799999999887556789999999887765


Q ss_pred             c
Q psy13204        143 E  143 (189)
Q Consensus       143 ~  143 (189)
                      .
T Consensus       111 ~  111 (199)
T 2xvm_A          111 E  111 (199)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.43  E-value=2.6e-12  Score=94.71  Aligned_cols=108  Identities=16%  Similarity=0.120  Sum_probs=83.6

Q ss_pred             HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204         52 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL  128 (189)
Q Consensus        52 ~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~  128 (189)
                      .+...+...+  .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++++...++ .+++++++|+.+.. +..
T Consensus        64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~  142 (210)
T 3lbf_A           64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDL-HNVSTRHGDGWQGWQARA  142 (210)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC-CceEEEECCcccCCccCC
Confidence            3455555544  3488999999999999999999999999999999999999999999888 47999999998865 456


Q ss_pred             CccEEEECCCCCCCccccccccccccCcCCCCchhHHHH
Q psy13204        129 QGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQV  167 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~~~~~~  167 (189)
                      +||+|+++.+++...     ..+.+.+++  ||..++.+
T Consensus       143 ~~D~i~~~~~~~~~~-----~~~~~~L~p--gG~lv~~~  174 (210)
T 3lbf_A          143 PFDAIIVTAAPPEIP-----TALMTQLDE--GGILVLPV  174 (210)
T ss_dssp             CEEEEEESSBCSSCC-----THHHHTEEE--EEEEEEEE
T ss_pred             CccEEEEccchhhhh-----HHHHHhccc--CcEEEEEE
Confidence            899999987765422     134455544  35544433

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.43  E-value=2.2e-12  Score=93.15  Aligned_cols=94  Identities=23%  Similarity=0.336  Sum_probs=78.0

Q ss_pred             cChHHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204         48 VTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA  125 (189)
Q Consensus        48 ~~~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  125 (189)
                      .+++.+...+...+  .++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++...+...++++.++|+.+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   95 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL   95 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhc
Confidence            44455666665544  3488999999999999999999889999999999999999999998887568999999988743


Q ss_pred             CC-CCccEEEECCCCCC
Q psy13204        126 PS-LQGDVVFLSPPWGG  141 (189)
Q Consensus       126 ~~-~~~D~v~~npp~~~  141 (189)
                      +. ..||+|+++.+++.
T Consensus        96 ~~~~~~D~v~~~~~~~~  112 (192)
T 1l3i_A           96 CKIPDIDIAVVGGSGGE  112 (192)
T ss_dssp             TTSCCEEEEEESCCTTC
T ss_pred             ccCCCCCEEEECCchHH
Confidence            33 58999999988753

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.43  E-value=7.2e-13  Score=105.16  Aligned_cols=98  Identities=16%  Similarity=0.244  Sum_probs=79.3

Q ss_pred             CCCcccccChHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEE
Q psy13204         41 ATESWYSVTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQF  116 (189)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~  116 (189)
                      .+..|.+...+...+.+.+.+.  .+.+|||+|||+|.++..+++.+  .+++++|+|+.+++.+++++..+++  ..++
T Consensus       172 ~~gvf~~~~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~  249 (343)
T 2pjd_A          172 LPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEV  249 (343)
T ss_dssp             CTTCTTSSSCCHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--CCEE
T ss_pred             cCCccCCCCCcHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCEE
Confidence            3444555444455666666663  36789999999999999999885  5899999999999999999998887  5678


Q ss_pred             EeCCcccCCCCCCccEEEECCCCCC
Q psy13204        117 IQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus       117 ~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      +.+|..+.. ..+||+|++||||+.
T Consensus       250 ~~~d~~~~~-~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          250 FASNVFSEV-KGRFDMIISNPPFHD  273 (343)
T ss_dssp             EECSTTTTC-CSCEEEEEECCCCCS
T ss_pred             EEccccccc-cCCeeEEEECCCccc
Confidence            999988764 568999999999985

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.42  E-value=1.7e-13  Score=102.03  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=68.8

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC------CCCccEE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP------SLQGDVV  133 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~D~v  133 (189)
                      ++.+|||+|||+|..+..+++.   +.+++++|+++.+++.|++++...++.++++++++|+.+..+      ...||+|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v  137 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI  137 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence            4889999999999999999988   789999999999999999999999986679999999977542      1579999


Q ss_pred             EECCCCC
Q psy13204        134 FLSPPWG  140 (189)
Q Consensus       134 ~~npp~~  140 (189)
                      ++|++..
T Consensus       138 ~~d~~~~  144 (223)
T 3duw_A          138 FIDADKQ  144 (223)
T ss_dssp             EECSCGG
T ss_pred             EEcCCcH
Confidence            9998843

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.42  E-value=1.8e-12  Score=101.36  Aligned_cols=85  Identities=25%  Similarity=0.372  Sum_probs=70.8

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC----CCccEE
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS----LQGDVV  133 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~D~v  133 (189)
                      .+++.+|||+|||+|+.+..+++.   ..+|+++|+++.+++.+++|++..|+ .+++++++|+.+....    ..||.|
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~fD~V  178 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHYI  178 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCccccccCCCCEE
Confidence            345889999999999999999875   36899999999999999999999998 5899999999887532    479999


Q ss_pred             EECCCCCCCcccc
Q psy13204        134 FLSPPWGGPEYAR  146 (189)
Q Consensus       134 ~~npp~~~~~~~~  146 (189)
                      ++||||.+.+...
T Consensus       179 l~D~PcSg~G~~~  191 (309)
T 2b9e_A          179 LLDPSCSGSGMPS  191 (309)
T ss_dssp             EECCCCCC-----
T ss_pred             EEcCCcCCCCCCc
Confidence            9999998766543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.42  E-value=1.4e-13  Score=104.44  Aligned_cols=94  Identities=16%  Similarity=0.187  Sum_probs=74.9

Q ss_pred             ccccChH--HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC
Q psy13204         45 WYSVTPE--KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG  119 (189)
Q Consensus        45 ~~~~~~~--~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (189)
                      .....++  .+...++... .+.+|||+|||+|..++.+++.   +.+++++|+++.+++.|++++...++.++++++++
T Consensus        60 ~~~~~~~~~~ll~~l~~~~-~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~g  138 (247)
T 1sui_A           60 IMTTSADEGQFLSMLLKLI-NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG  138 (247)
T ss_dssp             GGSCCHHHHHHHHHHHHHT-TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred             CCCcCHHHHHHHHHHHHhh-CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence            3444443  2333334433 3789999999999999999987   68999999999999999999999988668999999


Q ss_pred             CcccCCC--------CCCccEEEECCCC
Q psy13204        120 DFFALAP--------SLQGDVVFLSPPW  139 (189)
Q Consensus       120 d~~~~~~--------~~~~D~v~~npp~  139 (189)
                      |+.+..+        ..+||+|++|.+.
T Consensus       139 da~~~l~~l~~~~~~~~~fD~V~~d~~~  166 (247)
T 1sui_A          139 PALPVLDEMIKDEKNHGSYDFIFVDADK  166 (247)
T ss_dssp             CHHHHHHHHHHSGGGTTCBSEEEECSCS
T ss_pred             CHHHHHHHHHhccCCCCCEEEEEEcCch
Confidence            9987532        4689999999764

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.42  E-value=7.8e-13  Score=98.59  Aligned_cols=78  Identities=18%  Similarity=0.270  Sum_probs=68.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC----CCCCCccEEEEC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL----APSLQGDVVFLS  136 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~n  136 (189)
                      .+.+|||+|||+|.++..+++.  +..|+|+|+++.+++.|++++...++ .++.++++|+.+.    .+..++|.|+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l-~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL-SNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC-SSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            4789999999999999999987  46799999999999999999999988 4799999998875    366799999998


Q ss_pred             --CCCCC
Q psy13204        137 --PPWGG  141 (189)
Q Consensus       137 --pp~~~  141 (189)
                        +||..
T Consensus       113 ~~~p~~~  119 (218)
T 3dxy_A          113 FPDPWHK  119 (218)
T ss_dssp             SCCCCCS
T ss_pred             CCCCccc
Confidence              66654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.42  E-value=6.7e-13  Score=111.15  Aligned_cols=97  Identities=22%  Similarity=0.287  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh--------------------CCeEEEEeCCHHHHHHHHHHHH
Q psy13204         49 TPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV--------------------CQKVISIDIDPAKLRLAQHNAS  106 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~--------------------~~~v~~vD~~~~~~~~a~~~~~  106 (189)
                      ||..+.+.+++.+.+  +.+|+|++||+|++.+.+++.                    ..+++|+|+++.+++.|+.|+.
T Consensus       153 TP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~  232 (541)
T 2ar0_A          153 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  232 (541)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence            667788888777654  679999999999999998764                    1379999999999999999999


Q ss_pred             HhCCCC----ceEEEeCCcccCC--CCCCccEEEECCCCCCCccc
Q psy13204        107 VYGVSH----KIQFIQGDFFALA--PSLQGDVVFLSPPWGGPEYA  145 (189)
Q Consensus       107 ~~~~~~----~~~~~~~d~~~~~--~~~~~D~v~~npp~~~~~~~  145 (189)
                      ..++..    +..+.++|++...  ....||+|++||||......
T Consensus       233 l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~  277 (541)
T 2ar0_A          233 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT  277 (541)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSC
T ss_pred             HhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccch
Confidence            888842    2789999987653  34689999999999976543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.42  E-value=4.5e-13  Score=107.64  Aligned_cols=78  Identities=18%  Similarity=0.092  Sum_probs=69.8

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      ++.+|||+|||+|.+++.++++|. +|+|+|++ .+++.|++++..+++.++++++++|+.+.....+||+|++++..+.
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~~  141 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYF  141 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBTT
T ss_pred             CCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhhc
Confidence            388999999999999999999977 99999999 9999999999999987679999999998864478999999885443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.42  E-value=4.8e-13  Score=103.01  Aligned_cols=81  Identities=20%  Similarity=0.359  Sum_probs=69.7

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--C-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-----CCCccEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--C-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDVV  133 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~D~v  133 (189)
                      .++.+|||+|||+|+.+..+++.  + .+|+|+|+++.+++.+++|+...++. +++++++|+.+...     ...||+|
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCEE
Confidence            45889999999999999999874  4 78999999999999999999999984 89999999987642     5689999


Q ss_pred             EECCCCCCCc
Q psy13204        134 FLSPPWGGPE  143 (189)
Q Consensus       134 ~~npp~~~~~  143 (189)
                      ++||||.+.+
T Consensus       161 l~d~Pcs~~g  170 (274)
T 3ajd_A          161 LLDAPCSGNI  170 (274)
T ss_dssp             EEEECCC---
T ss_pred             EEcCCCCCCc
Confidence            9999998754

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.41  E-value=7.3e-13  Score=98.69  Aligned_cols=77  Identities=21%  Similarity=0.155  Sum_probs=68.4

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC-------CCccE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-------LQGDV  132 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~D~  132 (189)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...++.++++++++|+.+..+.       .+||+
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL  143 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence            3789999999999999999987   7899999999999999999999999866799999999775411       68999


Q ss_pred             EEECCCC
Q psy13204        133 VFLSPPW  139 (189)
Q Consensus       133 v~~npp~  139 (189)
                      |++|++.
T Consensus       144 v~~~~~~  150 (225)
T 3tr6_A          144 IYIDADK  150 (225)
T ss_dssp             EEECSCG
T ss_pred             EEECCCH
Confidence            9999874

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.41  E-value=1.2e-12  Score=100.54  Aligned_cols=87  Identities=16%  Similarity=0.157  Sum_probs=72.2

Q ss_pred             HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CC-
Q psy13204         52 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PS-  127 (189)
Q Consensus        52 ~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~-  127 (189)
                      .+.+.+++.+  .++ +|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++..  +  .+++++++|+.+.. +. 
T Consensus        34 ~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~--~--~~v~vi~~D~l~~~~~~~  108 (271)
T 3fut_A           34 AHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS--G--LPVRLVFQDALLYPWEEV  108 (271)
T ss_dssp             HHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT--T--SSEEEEESCGGGSCGGGS
T ss_pred             HHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC--C--CCEEEEECChhhCChhhc
Confidence            3555555554  337 99999999999999999999999999999999999998875  2  48999999999876 22 


Q ss_pred             CCccEEEECCCCCCCc
Q psy13204        128 LQGDVVFLSPPWGGPE  143 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~  143 (189)
                      ..+|.|++|+||+...
T Consensus       109 ~~~~~iv~NlPy~iss  124 (271)
T 3fut_A          109 PQGSLLVANLPYHIAT  124 (271)
T ss_dssp             CTTEEEEEEECSSCCH
T ss_pred             cCccEEEecCcccccH
Confidence            3689999999998743

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.41  E-value=4e-13  Score=102.28  Aligned_cols=105  Identities=15%  Similarity=0.131  Sum_probs=76.7

Q ss_pred             HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH----------hC------CCCce
Q psy13204         53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV----------YG------VSHKI  114 (189)
Q Consensus        53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~----------~~------~~~~~  114 (189)
                      +.+.+....  .++.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.|+++...          .+      ...++
T Consensus        56 l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  135 (252)
T 2gb4_A           56 LKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSI  135 (252)
T ss_dssp             HHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE
T ss_pred             HHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCce
Confidence            444443332  3588999999999999999999999999999999999999766531          00      11479


Q ss_pred             EEEeCCcccCCCC--CCccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204        115 QFIQGDFFALAPS--LQGDVVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       115 ~~~~~d~~~~~~~--~~~D~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      +++++|+.+....  .+||+|++...+.......   ....+.++|++
T Consensus       136 ~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp  183 (252)
T 2gb4_A          136 SLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK  183 (252)
T ss_dssp             EEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE
T ss_pred             EEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC
Confidence            9999999987632  6899999987777654332   12345556644

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.41  E-value=4.8e-13  Score=103.72  Aligned_cols=95  Identities=12%  Similarity=0.140  Sum_probs=76.8

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  139 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~  139 (189)
                      .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|+++....++..+++++++|+.+.+ +..+||+|++.-..
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  160 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  160 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchh
Confidence            45889999999999999999987 88999999999999999999998888668999999998875 56789999997666


Q ss_pred             CCCcccc-ccccccccCc
Q psy13204        140 GGPEYAR-SSFSIDNIFP  156 (189)
Q Consensus       140 ~~~~~~~-~~~~~~~~l~  156 (189)
                      ++..... ....+.++|+
T Consensus       161 ~~~~~~~~~l~~~~~~Lk  178 (297)
T 2o57_A          161 LHSPDKLKVFQECARVLK  178 (297)
T ss_dssp             GGCSCHHHHHHHHHHHEE
T ss_pred             hhcCCHHHHHHHHHHHcC
Confidence            5543322 2233445553

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.41  E-value=2.4e-12  Score=100.99  Aligned_cols=84  Identities=23%  Similarity=0.329  Sum_probs=72.9

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEEC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  136 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n  136 (189)
                      .+++.+|||+|||+|..+..+++.   +.+|+|+|+++.+++.+++|+...++ .+++++++|+.+.. ....||+|++|
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CeEEEEECChhhcccccccCCEEEEe
Confidence            344889999999999999999876   36899999999999999999999998 47999999998865 34579999999


Q ss_pred             CCCCCCccc
Q psy13204        137 PPWGGPEYA  145 (189)
Q Consensus       137 pp~~~~~~~  145 (189)
                      |||.+.+..
T Consensus       195 ~Pcsg~g~~  203 (315)
T 1ixk_A          195 APCTGSGTI  203 (315)
T ss_dssp             CCTTSTTTC
T ss_pred             CCCCCcccc
Confidence            999876543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.41  E-value=8.2e-13  Score=105.04  Aligned_cols=99  Identities=17%  Similarity=0.179  Sum_probs=77.8

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|+++++.+++.++++++++|+.+.....+||+|+++++...
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~  128 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYM  128 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBTT
T ss_pred             CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchhc
Confidence            488999999999999999998865 899999996 889999999999987789999999988754468999999988765


Q ss_pred             Ccccc---ccccccccCcCCCCchhH
Q psy13204        142 PEYAR---SSFSIDNIFPEQGGGRRL  164 (189)
Q Consensus       142 ~~~~~---~~~~~~~~l~~~~~g~~~  164 (189)
                      .....   ....+.++|++  ||..+
T Consensus       129 ~~~~~~~~~l~~~~~~Lkp--gG~li  152 (348)
T 2y1w_A          129 LFNERMLESYLHAKKYLKP--SGNMF  152 (348)
T ss_dssp             BTTTSHHHHHHHGGGGEEE--EEEEE
T ss_pred             CChHHHHHHHHHHHhhcCC--CeEEE
Confidence            43332   22234556644  35543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.41  E-value=3.2e-13  Score=105.03  Aligned_cols=106  Identities=14%  Similarity=0.128  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHhCC-CCCEEEEecCCCChHHHHHHH---hCCeEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEeCCcccC
Q psy13204         50 PEKVAQHIASRCK-ASDVVIDGFCGCGGNTIQFAA---VCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFAL  124 (189)
Q Consensus        50 ~~~~~~~~~~~~~-~~~~vlD~g~G~G~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~  124 (189)
                      +..+.+.+..... ++.+|||+|||+|.++..+++   .+.+|+|+|+++.+++.|++++... +...+++++++|+.+.
T Consensus        22 ~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~  101 (299)
T 3g5t_A           22 PSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF  101 (299)
T ss_dssp             CHHHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC
T ss_pred             CHHHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC
Confidence            4566777766643 488999999999999999995   5789999999999999999998876 4446899999999886


Q ss_pred             C-CC------CCccEEEECCCCCCCccccccccccccC
Q psy13204        125 A-PS------LQGDVVFLSPPWGGPEYARSSFSIDNIF  155 (189)
Q Consensus       125 ~-~~------~~~D~v~~npp~~~~~~~~~~~~~~~~l  155 (189)
                      . +.      .+||+|+++..+++.+.......+.++|
T Consensus       102 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~L  139 (299)
T 3g5t_A          102 KFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANL  139 (299)
T ss_dssp             GGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHE
T ss_pred             CccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhc
Confidence            5 33      6899999988777652222333444455

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.40  E-value=2.1e-12  Score=96.94  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=70.4

Q ss_pred             CCCEEEEecCCCChHHHHHHH--hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC---CCCccEEEECC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSP  137 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~np  137 (189)
                      ++.+|||+|||+|..+..+++  .+.+|+++|+++.+++.|++++...++.++++++++|+.+..+   ..+||+|++|.
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~  150 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA  150 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence            488999999999999999998  4789999999999999999999999986689999999988654   57899999997


Q ss_pred             CCCC
Q psy13204        138 PWGG  141 (189)
Q Consensus       138 p~~~  141 (189)
                      +...
T Consensus       151 ~~~~  154 (232)
T 3ntv_A          151 AKAQ  154 (232)
T ss_dssp             TSSS
T ss_pred             cHHH
Confidence            7543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.40  E-value=1.3e-13  Score=105.10  Aligned_cols=109  Identities=13%  Similarity=0.128  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204         50 PEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ  129 (189)
Q Consensus        50 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  129 (189)
                      .+.+.+.+....+++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++..      +++++++|+.+.....+
T Consensus        37 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~  110 (263)
T 3pfg_A           37 AADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSLGRR  110 (263)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCCSCC
T ss_pred             HHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCccCC
Confidence            345666666666768899999999999999999999999999999999999988753      78999999988766678


Q ss_pred             ccEEEECC-CCCCCcccc----ccccccccCcCCCCchhHHH
Q psy13204        130 GDVVFLSP-PWGGPEYAR----SSFSIDNIFPEQGGGRRLFQ  166 (189)
Q Consensus       130 ~D~v~~np-p~~~~~~~~----~~~~~~~~l~~~~~g~~~~~  166 (189)
                      ||+|+++. .++......    ....+.++|++  ||..+++
T Consensus       111 fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~p--gG~l~i~  150 (263)
T 3pfg_A          111 FSAVTCMFSSIGHLAGQAELDAALERFAAHVLP--DGVVVVE  150 (263)
T ss_dssp             EEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEE--EEEEEEC
T ss_pred             cCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCC--CcEEEEE
Confidence            99999986 666542111    23345556644  3655543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.40  E-value=2.8e-13  Score=101.82  Aligned_cols=103  Identities=17%  Similarity=0.248  Sum_probs=81.2

Q ss_pred             ChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CC
Q psy13204         49 TPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PS  127 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~  127 (189)
                      .+..+...+...++++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++.    ...+++++++|+.+.. +.
T Consensus        39 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~  114 (242)
T 3l8d_A           39 SRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFEN  114 (242)
T ss_dssp             TTTTHHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCT
T ss_pred             cHHHHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCC
Confidence            344567777777888999999999999999999999999999999999999998774    1247899999998875 56


Q ss_pred             CCccEEEECCCCCCCcccc-ccccccccC
Q psy13204        128 LQGDVVFLSPPWGGPEYAR-SSFSIDNIF  155 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~~~~-~~~~~~~~l  155 (189)
                      .+||+|++...+++..... ....+.+++
T Consensus       115 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L  143 (242)
T 3l8d_A          115 EQFEAIMAINSLEWTEEPLRALNEIKRVL  143 (242)
T ss_dssp             TCEEEEEEESCTTSSSCHHHHHHHHHHHE
T ss_pred             CCccEEEEcChHhhccCHHHHHHHHHHHh
Confidence            7899999988777654332 222344444

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.40  E-value=4.1e-13  Score=107.46  Aligned_cols=76  Identities=16%  Similarity=0.133  Sum_probs=68.1

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      +++|||+|||+|.+++.++++|+ +|+|+|.++ +++.|+++++.+++.++++++++|+.+.....++|+|++++.-.
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~  160 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY  160 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBT
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccc
Confidence            89999999999999999999975 699999996 88999999999999888999999999887557899999975533

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.40  E-value=4.9e-13  Score=108.56  Aligned_cols=86  Identities=26%  Similarity=0.407  Sum_probs=73.8

Q ss_pred             ChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204         49 TPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  123 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  123 (189)
                      +|+.+.+.+++.+..  +.+|||+|||+|.++..+++.   +.+++|+|+++.+++.|          .+++++++|+.+
T Consensus        23 TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~   92 (421)
T 2ih2_A           23 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLL   92 (421)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGG
T ss_pred             CCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhh
Confidence            567788888888763  679999999999999999875   57899999999999876          378999999998


Q ss_pred             CCCCCCccEEEECCCCCCCcc
Q psy13204        124 LAPSLQGDVVFLSPPWGGPEY  144 (189)
Q Consensus       124 ~~~~~~~D~v~~npp~~~~~~  144 (189)
                      ..+...||+|++||||.....
T Consensus        93 ~~~~~~fD~Ii~NPPy~~~~~  113 (421)
T 2ih2_A           93 WEPGEAFDLILGNPPYGIVGE  113 (421)
T ss_dssp             CCCSSCEEEEEECCCCCCBSC
T ss_pred             cCccCCCCEEEECcCccCccc
Confidence            876678999999999987554

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.40  E-value=9.3e-13  Score=99.18  Aligned_cols=81  Identities=25%  Similarity=0.322  Sum_probs=70.8

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  139 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~  139 (189)
                      .+++.+|||+|||+|.++..+++.+.+++|+|+++.+++.+++++...++ .+++++++|+.+.. +..+||+|+++-..
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~v~~~~~l   97 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAA   97 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEecccccCCCCCCcEEEEEECCch
Confidence            34588999999999999999999989999999999999999999988887 47999999998865 55789999998665


Q ss_pred             CCC
Q psy13204        140 GGP  142 (189)
Q Consensus       140 ~~~  142 (189)
                      ++.
T Consensus        98 ~~~  100 (239)
T 1xxl_A           98 HHF  100 (239)
T ss_dssp             GGC
T ss_pred             hhc
Confidence            543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.39  E-value=8.9e-13  Score=101.99  Aligned_cols=76  Identities=21%  Similarity=0.232  Sum_probs=65.6

Q ss_pred             hCCCCCEEEEecCCCChHH-HHHHH-hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECC
Q psy13204         60 RCKASDVVIDGFCGCGGNT-IQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  137 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~-~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~np  137 (189)
                      .++++.+|||+|||+|.++ +.+++ .+++|+|+|+++++++.|++++...|+ .+++++++|+.+.. ..+||+|+++-
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~-d~~FDvV~~~a  196 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID-GLEFDVLMVAA  196 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG-GCCCSEEEECT
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC-CCCcCEEEECC
Confidence            4566999999999999866 44555 389999999999999999999999998 79999999999874 67899999853

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.39  E-value=2.9e-12  Score=94.31  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=76.9

Q ss_pred             cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcc
Q psy13204         44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF  122 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  122 (189)
                      .|+.. ...+...+...+.++.+|||+|||+|.++..+++.+. +++|+|+++.+++.++++...  . .+++++++|+.
T Consensus        24 ~~~~~-~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~-~~i~~~~~d~~   99 (215)
T 2pxx_A           24 DWFGD-FSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--V-PQLRWETMDVR   99 (215)
T ss_dssp             CTTCC-HHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--C-TTCEEEECCTT
T ss_pred             ccccC-HHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--C-CCcEEEEcchh
Confidence            44443 3456777777777789999999999999999999876 899999999999999988753  2 47899999998


Q ss_pred             cCC-CCCCccEEEECCCCCC
Q psy13204        123 ALA-PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       123 ~~~-~~~~~D~v~~npp~~~  141 (189)
                      +.. +..+||+|+++++++.
T Consensus       100 ~~~~~~~~fD~v~~~~~~~~  119 (215)
T 2pxx_A          100 KLDFPSASFDVVLEKGTLDA  119 (215)
T ss_dssp             SCCSCSSCEEEEEEESHHHH
T ss_pred             cCCCCCCcccEEEECcchhh
Confidence            864 5568999999888753

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.39  E-value=2.3e-12  Score=103.47  Aligned_cols=97  Identities=19%  Similarity=0.163  Sum_probs=77.1

Q ss_pred             CcccccChHHHHHH---HHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh---------
Q psy13204         43 ESWYSVTPEKVAQH---IASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY---------  108 (189)
Q Consensus        43 ~~~~~~~~~~~~~~---~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~---------  108 (189)
                      ..||+...+.-...   ++... .+.+|||+|||+|.+++.+++.  +.+|+++|+++.+++.+++|+..+         
T Consensus        25 ~~F~np~~~~nr~l~~~~l~~~-~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~  103 (378)
T 2dul_A           25 PVFYNPRMALNRDIVVVLLNIL-NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESK  103 (378)
T ss_dssp             CCCCCGGGHHHHHHHHHHHHHH-CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECS
T ss_pred             CceeCCchHHHHHHHHHHHHHc-CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhccccccccc
Confidence            47777655432322   33333 4889999999999999999987  358999999999999999999999         


Q ss_pred             ------CCCCceEEEeCCcccCC--CCCCccEEEECCCCCC
Q psy13204        109 ------GVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       109 ------~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~  141 (189)
                            ++. +++++++|+.+..  ....||+|++|||+..
T Consensus       104 ~~~~~~gl~-~i~v~~~Da~~~~~~~~~~fD~I~lDP~~~~  143 (378)
T 2dul_A          104 GRAILKGEK-TIVINHDDANRLMAERHRYFHFIDLDPFGSP  143 (378)
T ss_dssp             SEEEEESSS-EEEEEESCHHHHHHHSTTCEEEEEECCSSCC
T ss_pred             ccccccCCC-ceEEEcCcHHHHHHhccCCCCEEEeCCCCCH
Confidence                  873 5999999998765  2357999999998764

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.39  E-value=2.1e-12  Score=97.79  Aligned_cols=86  Identities=17%  Similarity=0.266  Sum_probs=71.1

Q ss_pred             HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CC-
Q psy13204         52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PS-  127 (189)
Q Consensus        52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~-  127 (189)
                      .+.+.+++.+.  ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++....   .+++++++|+.+.. +. 
T Consensus        17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~~   93 (244)
T 1qam_A           17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN   93 (244)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred             HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcccC
Confidence            45666666654  3789999999999999999999999999999999999999887532   48999999999875 32 


Q ss_pred             CCccEEEECCCCCC
Q psy13204        128 LQGDVVFLSPPWGG  141 (189)
Q Consensus       128 ~~~D~v~~npp~~~  141 (189)
                      ..+ .|++||||+.
T Consensus        94 ~~~-~vv~nlPy~~  106 (244)
T 1qam_A           94 QSY-KIFGNIPYNI  106 (244)
T ss_dssp             CCC-EEEEECCGGG
T ss_pred             CCe-EEEEeCCccc
Confidence            234 7899999975

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.39  E-value=7.5e-13  Score=105.30  Aligned_cols=79  Identities=20%  Similarity=0.136  Sum_probs=69.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~  140 (189)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|++++..+++.++++++++|+.+.. +..+||+|+++++..
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~  144 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  144 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence            388999999999999999999865 899999994 99999999999998667999999999875 557899999998754


Q ss_pred             CC
Q psy13204        141 GP  142 (189)
Q Consensus       141 ~~  142 (189)
                      ..
T Consensus       145 ~l  146 (349)
T 3q7e_A          145 CL  146 (349)
T ss_dssp             TB
T ss_pred             cc
Confidence            43

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.38  E-value=2.2e-13  Score=106.30  Aligned_cols=89  Identities=17%  Similarity=0.134  Sum_probs=75.2

Q ss_pred             HHHHHhCCCCCEEEEecCCCChHHHHHHH--h-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCcc
Q psy13204         55 QHIASRCKASDVVIDGFCGCGGNTIQFAA--V-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD  131 (189)
Q Consensus        55 ~~~~~~~~~~~~vlD~g~G~G~~~~~~~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  131 (189)
                      ..+...++++.+|||+|||+|.++..++.  . +.+++|+|+++.+++.|+++....++.++++++++|+.+.....+||
T Consensus       110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  189 (305)
T 3ocj_A          110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYD  189 (305)
T ss_dssp             HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEE
T ss_pred             HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeE
Confidence            44445567789999999999999999852  2 67999999999999999999998888666999999999986448899


Q ss_pred             EEEECCCCCCCc
Q psy13204        132 VVFLSPPWGGPE  143 (189)
Q Consensus       132 ~v~~npp~~~~~  143 (189)
                      +|+++.+++...
T Consensus       190 ~v~~~~~~~~~~  201 (305)
T 3ocj_A          190 LLTSNGLNIYEP  201 (305)
T ss_dssp             EEECCSSGGGCC
T ss_pred             EEEECChhhhcC
Confidence            999998887643

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.38  E-value=1.2e-12  Score=105.37  Aligned_cols=76  Identities=18%  Similarity=0.216  Sum_probs=66.8

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--C-CeEEEEeCCHHHHHHHHHHHHHhCCCCc-eEEEeCCcccCCC---CCCccEEEE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--C-QKVISIDIDPAKLRLAQHNASVYGVSHK-IQFIQGDFFALAP---SLQGDVVFL  135 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~---~~~~D~v~~  135 (189)
                      ++.+|||+|||+|.+++.+++.  | .+|+++|+++.+++.+++|++.+++.++ ++++++|+.+...   ...||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            4789999999999999999985  4 5799999999999999999999999655 9999999977643   347999999


Q ss_pred             CCC
Q psy13204        136 SPP  138 (189)
Q Consensus       136 npp  138 (189)
                      ||+
T Consensus       132 DP~  134 (392)
T 3axs_A          132 DPF  134 (392)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            993

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.38  E-value=3e-12  Score=95.57  Aligned_cols=89  Identities=15%  Similarity=0.069  Sum_probs=73.7

Q ss_pred             HHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCcccCC
Q psy13204         52 KVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA  125 (189)
Q Consensus        52 ~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~  125 (189)
                      .+...++...+.  +.+|||+|||+|..++.+++.   +.+|+++|+++++++.|++++...++. ++++++++|+.+..
T Consensus        43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l  122 (221)
T 3dr5_A           43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM  122 (221)
T ss_dssp             HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred             HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence            344555555442  339999999999999999985   679999999999999999999999986 68999999998765


Q ss_pred             ---CCCCccEEEECCCCC
Q psy13204        126 ---PSLQGDVVFLSPPWG  140 (189)
Q Consensus       126 ---~~~~~D~v~~npp~~  140 (189)
                         +..+||+|++|.+..
T Consensus       123 ~~~~~~~fD~V~~d~~~~  140 (221)
T 3dr5_A          123 SRLANDSYQLVFGQVSPM  140 (221)
T ss_dssp             GGSCTTCEEEEEECCCTT
T ss_pred             HHhcCCCcCeEEEcCcHH
Confidence               256899999998754

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.38  E-value=3.1e-12  Score=100.21  Aligned_cols=101  Identities=12%  Similarity=0.055  Sum_probs=79.3

Q ss_pred             HHHHHhCC--CCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCcc
Q psy13204         55 QHIASRCK--ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD  131 (189)
Q Consensus        55 ~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  131 (189)
                      ..+.+.+.  ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....++..+++++++|+.+..  .+||
T Consensus        80 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~fD  157 (318)
T 2fk8_A           80 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVD  157 (318)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCS
T ss_pred             HHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCcC
Confidence            34444443  4789999999999999999987 89999999999999999999998888667999999998773  7899


Q ss_pred             EEEECCCCCCCcccc---ccccccccCcC
Q psy13204        132 VVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       132 ~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      +|+++..++......   ....+.+++++
T Consensus       158 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp  186 (318)
T 2fk8_A          158 RIVSIEAFEHFGHENYDDFFKRCFNIMPA  186 (318)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCT
T ss_pred             EEEEeChHHhcCHHHHHHHHHHHHHhcCC
Confidence            999987776653222   22344555644

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.38  E-value=6.1e-13  Score=98.63  Aligned_cols=95  Identities=17%  Similarity=0.143  Sum_probs=75.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCC----ceEEEeCCcccCC-CCCCccEEEE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSH----KIQFIQGDFFALA-PSLQGDVVFL  135 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~-~~~~~D~v~~  135 (189)
                      ++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.|++++...++..    +++++++|+.... +..+||+|++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  108 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV  108 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence            47899999999999999999875  599999999999999999988777643    7999999986554 3468999999


Q ss_pred             CCCCCCCcccc---ccccccccCcC
Q psy13204        136 SPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       136 npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      +-.++......   ....+.+++++
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~Lkp  133 (217)
T 3jwh_A          109 IEVIEHLDLSRLGAFERVLFEFAQP  133 (217)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHcCC
Confidence            88777654331   23345556644

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.37  E-value=4.6e-12  Score=104.55  Aligned_cols=82  Identities=18%  Similarity=0.249  Sum_probs=72.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSP  137 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~np  137 (189)
                      ++.+|||+|||+|+.+..+++.   ..+|+++|+++.+++.+++|+...|+ .++.++++|+.++.  ....||+|++||
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-~nv~~~~~D~~~~~~~~~~~fD~Il~D~  195 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-SNVALTHFDGRVFGAAVPEMFDAILLDA  195 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHhhhhccccCCEEEECC
Confidence            5889999999999999999886   36899999999999999999999998 47999999998764  346899999999


Q ss_pred             CCCCCccc
Q psy13204        138 PWGGPEYA  145 (189)
Q Consensus       138 p~~~~~~~  145 (189)
                      ||.+.+..
T Consensus       196 PcSg~G~~  203 (479)
T 2frx_A          196 PCSGEGVV  203 (479)
T ss_dssp             CCCCGGGG
T ss_pred             CcCCcccc
Confidence            99876543

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.37  E-value=3.1e-12  Score=102.58  Aligned_cols=78  Identities=15%  Similarity=0.120  Sum_probs=69.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC---CCCccEEEECC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSP  137 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~np  137 (189)
                      ++.+|||+| |+|.+++.+++.+  .+|+++|+++.+++.|++|+..+|+. +++++++|+.+..+   ..+||+|++||
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEECC
Confidence            378999999 9999999999885  58999999999999999999999985 89999999988433   35799999999


Q ss_pred             CCCCC
Q psy13204        138 PWGGP  142 (189)
Q Consensus       138 p~~~~  142 (189)
                      ||+..
T Consensus       250 p~~~~  254 (373)
T 2qm3_A          250 PETLE  254 (373)
T ss_dssp             CSSHH
T ss_pred             CCchH
Confidence            99754

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.37  E-value=8.3e-12  Score=96.03  Aligned_cols=79  Identities=23%  Similarity=0.261  Sum_probs=70.5

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  138 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp  138 (189)
                      .++.+|||+|||+|.++..+++.   +.+++++|+++.+++.|++++...++..+++++++|+.+..+...||+|++|+|
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~~~  190 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVP  190 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCS
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEECCc
Confidence            34789999999999999999987   579999999999999999999988875689999999988766678999999998


Q ss_pred             CC
Q psy13204        139 WG  140 (189)
Q Consensus       139 ~~  140 (189)
                      ..
T Consensus       191 ~~  192 (277)
T 1o54_A          191 DP  192 (277)
T ss_dssp             CG
T ss_pred             CH
Confidence            64

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.37  E-value=4.5e-13  Score=103.49  Aligned_cols=93  Identities=14%  Similarity=0.074  Sum_probs=74.3

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  138 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp  138 (189)
                      .++.+|||+|||+|.++..+++.   +.+++|+|+++.+++.|+++....+.  +++++++|+.+.....+||+|+++..
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~v~~~~~   98 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELNDKYDIAICHAF   98 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCcCCCeeEEEECCh
Confidence            34889999999999999999987   57999999999999999999887665  89999999998765568999999877


Q ss_pred             CCCCcccc-ccccccccCc
Q psy13204        139 WGGPEYAR-SSFSIDNIFP  156 (189)
Q Consensus       139 ~~~~~~~~-~~~~~~~~l~  156 (189)
                      .+...... ....+.++++
T Consensus        99 l~~~~~~~~~l~~~~~~Lk  117 (284)
T 3gu3_A           99 LLHMTTPETMLQKMIHSVK  117 (284)
T ss_dssp             GGGCSSHHHHHHHHHHTEE
T ss_pred             hhcCCCHHHHHHHHHHHcC
Confidence            66543222 2233444553

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.37  E-value=2.5e-12  Score=99.17  Aligned_cols=101  Identities=9%  Similarity=0.074  Sum_probs=78.7

Q ss_pred             HHHHHhC--CCCCEEEEecCCCChHHHHHH-HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCcc
Q psy13204         55 QHIASRC--KASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD  131 (189)
Q Consensus        55 ~~~~~~~--~~~~~vlD~g~G~G~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  131 (189)
                      ..+.+.+  .++.+|||+|||+|.++..++ +.+.+|+|+|+|+.+++.|++++...++..+++++++|+.+..  .+||
T Consensus        54 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~fD  131 (287)
T 1kpg_A           54 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVD  131 (287)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCS
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCee
Confidence            3444443  347899999999999999998 4588999999999999999999988887668999999998764  7899


Q ss_pred             EEEECCCCCCCcccc---ccccccccCcC
Q psy13204        132 VVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       132 ~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      +|++.-.+++.....   ....+.+++++
T Consensus       132 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp  160 (287)
T 1kpg_A          132 RIVSIGAFEHFGHERYDAFFSLAHRLLPA  160 (287)
T ss_dssp             EEEEESCGGGTCTTTHHHHHHHHHHHSCT
T ss_pred             EEEEeCchhhcChHHHHHHHHHHHHhcCC
Confidence            999987776653222   23345556644

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.37  E-value=7e-13  Score=98.39  Aligned_cols=95  Identities=14%  Similarity=0.076  Sum_probs=75.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCC----ceEEEeCCcccCC-CCCCccEEEE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSH----KIQFIQGDFFALA-PSLQGDVVFL  135 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~-~~~~~D~v~~  135 (189)
                      ++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.|++++...++..    +++++++|+.... +..+||+|++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  108 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV  108 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence            47899999999999999999876  699999999999999999988776643    7999999986654 4568999999


Q ss_pred             CCCCCCCcccc---ccccccccCcC
Q psy13204        136 SPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       136 npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      +-.++......   ....+.+++++
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~Lkp  133 (219)
T 3jwg_A          109 IEVIEHLDENRLQAFEKVLFEFTRP  133 (219)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhCC
Confidence            87777654331   23345556644

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.37  E-value=3.7e-13  Score=101.44  Aligned_cols=95  Identities=11%  Similarity=-0.022  Sum_probs=73.9

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEEC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLS  136 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~n  136 (189)
                      ..+|.+|||+|||+|..+..+++. +.++++||+++.+++.|+++....+.  +++++.+|+.+..   +..+||.|+.|
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~FD~i~~D  135 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccccccCCceEEEe
Confidence            345889999999999999999886 56899999999999999999877765  7899999987653   66789999999


Q ss_pred             CCCCCCcccc------ccccccccCcC
Q psy13204        137 PPWGGPEYAR------SSFSIDNIFPE  157 (189)
Q Consensus       137 pp~~~~~~~~------~~~~~~~~l~~  157 (189)
                      +.........      ....+.++|++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~e~~rvLkP  162 (236)
T 3orh_A          136 TYPLSEETWHTHQFNFIKNHAFRLLKP  162 (236)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred             eeecccchhhhcchhhhhhhhhheeCC
Confidence            7765432221      22345667744

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.37  E-value=6.6e-13  Score=98.37  Aligned_cols=81  Identities=17%  Similarity=0.247  Sum_probs=71.0

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEEC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  136 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n  136 (189)
                      +.++.+|||+|||+|.++..+++.+   .+++|+|+++.+++.+++++...++ .+++++++|+.+.. +..+||+|+++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~  113 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-KNVEVLKSEENKIPLPDNTVDFIFMA  113 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECBTTBCSSCSSCEEEEEEE
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEecccccCCCCCCCeeEEEee
Confidence            3458899999999999999999885   7999999999999999999998888 37999999998865 56789999998


Q ss_pred             CCCCCC
Q psy13204        137 PPWGGP  142 (189)
Q Consensus       137 pp~~~~  142 (189)
                      ..++..
T Consensus       114 ~~l~~~  119 (219)
T 3dh0_A          114 FTFHEL  119 (219)
T ss_dssp             SCGGGC
T ss_pred             hhhhhc
Confidence            777654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.37  E-value=4.9e-12  Score=99.27  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=87.9

Q ss_pred             ccCCCccccc-ChHHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCC---eEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy13204         39 NDATESWYSV-TPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSH  112 (189)
Q Consensus        39 ~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~  112 (189)
                      .++...|+|. ....+...+...+  +++.+|||+|||+|.++..+++.+.   +|+|+|+++++++.|++++...++. 
T Consensus        48 ~l~~~~f~q~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-  126 (317)
T 1dl5_A           48 SYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-  126 (317)
T ss_dssp             EEECSSCEEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-
T ss_pred             cccCCCcceeccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-
Confidence            3344445454 2233455555544  3488999999999999999998754   4999999999999999999998884 


Q ss_pred             ceEEEeCCcccCC-CCCCccEEEECCCCCCCccccccccccccCcCCCCchhHHH
Q psy13204        113 KIQFIQGDFFALA-PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQ  166 (189)
Q Consensus       113 ~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~~~~~  166 (189)
                      +++++++|..+.. +..+||+|+++++++...     ..+.+.|++  ||..++.
T Consensus       127 ~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~-----~~~~~~Lkp--gG~lvi~  174 (317)
T 1dl5_A          127 NVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP-----ETWFTQLKE--GGRVIVP  174 (317)
T ss_dssp             SEEEEESCGGGCCGGGCCEEEEEECSBBSCCC-----HHHHHHEEE--EEEEEEE
T ss_pred             CeEEEECChhhccccCCCeEEEEEcCCHHHHH-----HHHHHhcCC--CcEEEEE
Confidence            6999999998855 356899999999988643     234445543  3554443

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.36  E-value=6.4e-13  Score=98.05  Aligned_cols=84  Identities=15%  Similarity=0.027  Sum_probs=71.0

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccE
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDV  132 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~  132 (189)
                      ....+...++++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++.       ++.++++|+.+..+..+||+
T Consensus        33 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~fD~  105 (211)
T 3e23_A           33 TLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLDAIDAYDA  105 (211)
T ss_dssp             HHHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCCCCSCEEE
T ss_pred             HHHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCCCCCcEEE
Confidence            34445556677889999999999999999999999999999999999999886       45778899888776778999


Q ss_pred             EEECCCCCCCc
Q psy13204        133 VFLSPPWGGPE  143 (189)
Q Consensus       133 v~~npp~~~~~  143 (189)
                      |+++..++...
T Consensus       106 v~~~~~l~~~~  116 (211)
T 3e23_A          106 VWAHACLLHVP  116 (211)
T ss_dssp             EEECSCGGGSC
T ss_pred             EEecCchhhcC
Confidence            99988777654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.36  E-value=8.7e-13  Score=99.12  Aligned_cols=99  Identities=19%  Similarity=0.179  Sum_probs=78.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECC-CCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP-PWGG  141 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~np-p~~~  141 (189)
                      ++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++....+.  +++++++|+.+.....+||+|+++. .+++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCccCCceEEEEcCccccc
Confidence            478999999999999999999999999999999999999999887776  7899999998876447899999987 7665


Q ss_pred             Cc---ccc-ccccccccCcCCCCchhHH
Q psy13204        142 PE---YAR-SSFSIDNIFPEQGGGRRLF  165 (189)
Q Consensus       142 ~~---~~~-~~~~~~~~l~~~~~g~~~~  165 (189)
                      ..   ... ....+.+++++  ||..++
T Consensus       115 ~~~~~~~~~~l~~~~~~L~p--gG~l~~  140 (246)
T 1y8c_A          115 IIDSDDLKKYFKAVSNHLKE--GGVFIF  140 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEE--EEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCC--CcEEEE
Confidence            41   111 33345666644  355444

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.36  E-value=2e-12  Score=105.86  Aligned_cols=84  Identities=23%  Similarity=0.255  Sum_probs=73.4

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEEC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLS  136 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~n  136 (189)
                      .++.+|||+|||+|+.+..+++.   ..+|+++|+++.+++.+++|+...|+ .++.++++|+.+..  ....||+|++|
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~-~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV-SNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC-SSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhhhccccCCEEEEC
Confidence            45899999999999999999876   36899999999999999999999999 47999999988764  34689999999


Q ss_pred             CCCCCCcccc
Q psy13204        137 PPWGGPEYAR  146 (189)
Q Consensus       137 pp~~~~~~~~  146 (189)
                      |||.+.+...
T Consensus       183 aPCSg~G~~r  192 (456)
T 3m4x_A          183 APCSGEGMFR  192 (456)
T ss_dssp             CCCCCGGGTT
T ss_pred             CCCCCccccc
Confidence            9998876543

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.36  E-value=2.3e-12  Score=105.65  Aligned_cols=83  Identities=25%  Similarity=0.267  Sum_probs=72.3

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEEC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLS  136 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~n  136 (189)
                      .++.+|||+|||+|+.+..+++.   ..+|+++|+++.+++.+++|+...|+ . +.++++|+.+..  ....||+|++|
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~-~-v~~~~~Da~~l~~~~~~~FD~Il~D  177 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA-P-LAVTQAPPRALAEAFGTYFHRVLLD  177 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC-C-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-e-EEEEECCHHHhhhhccccCCEEEEC
Confidence            45889999999999999999876   36899999999999999999999999 3 999999988764  34689999999


Q ss_pred             CCCCCCcccc
Q psy13204        137 PPWGGPEYAR  146 (189)
Q Consensus       137 pp~~~~~~~~  146 (189)
                      |||.+.+...
T Consensus       178 ~PcSg~G~~r  187 (464)
T 3m6w_A          178 APCSGEGMFR  187 (464)
T ss_dssp             CCCCCGGGTT
T ss_pred             CCcCCccccc
Confidence            9998766543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.35  E-value=4.1e-12  Score=96.39  Aligned_cols=77  Identities=16%  Similarity=0.221  Sum_probs=68.3

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFL  135 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~  135 (189)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...++.++++++++|+.+..    ...+||+|++
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~  142 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI  142 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence            4889999999999999999987   67999999999999999999999998668999999987743    1348999999


Q ss_pred             CCCC
Q psy13204        136 SPPW  139 (189)
Q Consensus       136 npp~  139 (189)
                      |.+.
T Consensus       143 d~~~  146 (248)
T 3tfw_A          143 DADK  146 (248)
T ss_dssp             CSCG
T ss_pred             CCch
Confidence            8864

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.35  E-value=8.7e-13  Score=98.78  Aligned_cols=101  Identities=15%  Similarity=0.048  Sum_probs=78.2

Q ss_pred             HHHHHHhCC---CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC
Q psy13204         54 AQHIASRCK---ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL  128 (189)
Q Consensus        54 ~~~~~~~~~---~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  128 (189)
                      .+.+...+.   ++.+|||+|||+|.++..+++.  +.+++|+|+++.+++.|+++....+   +++++++|+.+.....
T Consensus        32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~  108 (234)
T 3dtn_A           32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFEE  108 (234)
T ss_dssp             HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCCS
T ss_pred             HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCCC
Confidence            344444443   4789999999999999999998  7799999999999999998875443   7999999999887558


Q ss_pred             CccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204        129 QGDVVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      +||+|+++.+++......   ....+.++|++
T Consensus       109 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp  140 (234)
T 3dtn_A          109 KYDMVVSALSIHHLEDEDKKELYKRSYSILKE  140 (234)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred             CceEEEEeCccccCCHHHHHHHHHHHHHhcCC
Confidence            899999998887654333   22345555533

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.35  E-value=1.9e-12  Score=102.19  Aligned_cols=78  Identities=22%  Similarity=0.278  Sum_probs=69.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~  140 (189)
                      ++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|++++..+++.++++++++|+.+.. +..+||+|+++++..
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~  116 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence            478999999999999999999865 89999999 599999999999998778999999998875 447899999998855


Q ss_pred             C
Q psy13204        141 G  141 (189)
Q Consensus       141 ~  141 (189)
                      .
T Consensus       117 ~  117 (328)
T 1g6q_1          117 F  117 (328)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.35  E-value=1e-11  Score=98.43  Aligned_cols=78  Identities=23%  Similarity=0.233  Sum_probs=68.5

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECC-C
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP-P  138 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~np-p  138 (189)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|++++..+++.++++++++|+.+.. +..+||+|++++ +
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  141 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  141 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence            4488999999999999999999875 899999997 99999999999988678999999998875 447899999987 4


Q ss_pred             CC
Q psy13204        139 WG  140 (189)
Q Consensus       139 ~~  140 (189)
                      |.
T Consensus       142 ~~  143 (340)
T 2fyt_A          142 YF  143 (340)
T ss_dssp             TT
T ss_pred             hh
Confidence            43

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.35  E-value=4.2e-12  Score=95.69  Aligned_cols=85  Identities=20%  Similarity=0.148  Sum_probs=71.2

Q ss_pred             HHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----
Q psy13204         54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----  126 (189)
Q Consensus        54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----  126 (189)
                      ...++... .+.+|||+|||+|..++.+++.   +.+++++|+++.+++.|++++...++.++++++++|+.+..+    
T Consensus        62 l~~l~~~~-~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~  140 (237)
T 3c3y_A           62 MSFVLKLV-NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQ  140 (237)
T ss_dssp             HHHHHHHT-TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHhh-CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh
Confidence            33444433 4789999999999999999987   689999999999999999999999986679999999987532    


Q ss_pred             ----CCCccEEEECCCC
Q psy13204        127 ----SLQGDVVFLSPPW  139 (189)
Q Consensus       127 ----~~~~D~v~~npp~  139 (189)
                          ..+||+|++|.+.
T Consensus       141 ~~~~~~~fD~I~~d~~~  157 (237)
T 3c3y_A          141 GQESEGSYDFGFVDADK  157 (237)
T ss_dssp             STTCTTCEEEEEECSCG
T ss_pred             ccCCCCCcCEEEECCch
Confidence                4689999999764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.35  E-value=2e-11  Score=92.05  Aligned_cols=83  Identities=18%  Similarity=0.209  Sum_probs=72.6

Q ss_pred             HHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccE
Q psy13204         56 HIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDV  132 (189)
Q Consensus        56 ~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~  132 (189)
                      .+...+  .++.+|||+|||+|.++..+++.+.+++++|+++.+++.|+++....++..++++..+|+.+.. +...||+
T Consensus        82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  161 (248)
T 2yvl_A           82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHA  161 (248)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSE
T ss_pred             HHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccE
Confidence            444444  3488999999999999999998888999999999999999999998887668999999998876 6678999


Q ss_pred             EEECCC
Q psy13204        133 VFLSPP  138 (189)
Q Consensus       133 v~~npp  138 (189)
                      |++|+|
T Consensus       162 v~~~~~  167 (248)
T 2yvl_A          162 AFVDVR  167 (248)
T ss_dssp             EEECSS
T ss_pred             EEECCc
Confidence            999988

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.35  E-value=6.3e-12  Score=93.86  Aligned_cols=76  Identities=14%  Similarity=0.195  Sum_probs=64.2

Q ss_pred             HHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--C-CCCccE
Q psy13204         56 HIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--P-SLQGDV  132 (189)
Q Consensus        56 ~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~-~~~~D~  132 (189)
                      .+....+++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++     . .+++++++|+.+..  + ..+||+
T Consensus        41 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~~~~~~~fD~  114 (226)
T 3m33_A           41 WLSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN-----A-PHADVYEWNGKGELPAGLGAPFGL  114 (226)
T ss_dssp             HHHHHCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-----C-TTSEEEECCSCSSCCTTCCCCEEE
T ss_pred             HHHhcCCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----C-CCceEEEcchhhccCCcCCCCEEE
Confidence            3344456689999999999999999999999999999999999999888     2 47899999996544  3 568999


Q ss_pred             EEECC
Q psy13204        133 VFLSP  137 (189)
Q Consensus       133 v~~np  137 (189)
                      |++++
T Consensus       115 v~~~~  119 (226)
T 3m33_A          115 IVSRR  119 (226)
T ss_dssp             EEEES
T ss_pred             EEeCC
Confidence            99973

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.34  E-value=6.3e-12  Score=93.21  Aligned_cols=76  Identities=14%  Similarity=0.053  Sum_probs=66.8

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP  137 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~np  137 (189)
                      .+..|||+|||+|.++..+++.  +.+++|+|+++.+++.|++++...++ .+++++++|+.+..   +..++|.|+++.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence            4789999999999999999987  67999999999999999999998888 58999999998752   556899999875


Q ss_pred             CC
Q psy13204        138 PW  139 (189)
Q Consensus       138 p~  139 (189)
                      |-
T Consensus       117 ~~  118 (213)
T 2fca_A          117 SD  118 (213)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.34  E-value=3.7e-12  Score=94.21  Aligned_cols=88  Identities=16%  Similarity=0.210  Sum_probs=72.8

Q ss_pred             HHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCcc
Q psy13204         54 AQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD  131 (189)
Q Consensus        54 ~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  131 (189)
                      ...+...+..  +.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++....   .+++++++|+.+..+..+||
T Consensus        40 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~fD  116 (216)
T 3ofk_A           40 TQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFSTAELFD  116 (216)
T ss_dssp             HHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCCCSCCEE
T ss_pred             HHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCCCCCCcc
Confidence            3444434433  679999999999999999999889999999999999999887643   37999999999887778899


Q ss_pred             EEEECCCCCCCcc
Q psy13204        132 VVFLSPPWGGPEY  144 (189)
Q Consensus       132 ~v~~npp~~~~~~  144 (189)
                      +|+++..+++...
T Consensus       117 ~v~~~~~l~~~~~  129 (216)
T 3ofk_A          117 LIVVAEVLYYLED  129 (216)
T ss_dssp             EEEEESCGGGSSS
T ss_pred             EEEEccHHHhCCC
Confidence            9999877776543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.34  E-value=7.8e-12  Score=96.17  Aligned_cols=77  Identities=14%  Similarity=0.157  Sum_probs=68.6

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEeCCcccCCCCCCccEEEECC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFALAPSLQGDVVFLSP  137 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~D~v~~np  137 (189)
                      .++.+|||+|||+|.++..+++.   +.+++++|+++.+++.|++++... +. .+++++++|+.+..+...||+|++|+
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~~fD~Vi~~~  187 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFISDQMYDAVIADI  187 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCCSCCEEEEEECC
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCcCCCccEEEEcC
Confidence            34789999999999999999987   789999999999999999999888 75 58999999998865667899999988


Q ss_pred             CC
Q psy13204        138 PW  139 (189)
Q Consensus       138 p~  139 (189)
                      |-
T Consensus       188 ~~  189 (275)
T 1yb2_A          188 PD  189 (275)
T ss_dssp             SC
T ss_pred             cC
Confidence            73

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.34  E-value=1e-12  Score=99.88  Aligned_cols=81  Identities=21%  Similarity=0.203  Sum_probs=68.7

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  139 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~  139 (189)
                      +.++.+|||+|||+|.++..+++.+.+++|+|+++.+++.+++++ ..+. .+++++++|+.+.. +..+||+|+++..+
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVD-RKVQVVQADARAIPLPDESVHGVIVVHLW  114 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSC-TTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccC-CceEEEEcccccCCCCCCCeeEEEECCch
Confidence            345889999999999999999999999999999999999999887 2222 58999999998775 55789999998777


Q ss_pred             CCCc
Q psy13204        140 GGPE  143 (189)
Q Consensus       140 ~~~~  143 (189)
                      +...
T Consensus       115 ~~~~  118 (263)
T 2yqz_A          115 HLVP  118 (263)
T ss_dssp             GGCT
T ss_pred             hhcC
Confidence            6643

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.33  E-value=9.3e-13  Score=100.17  Aligned_cols=92  Identities=20%  Similarity=0.195  Sum_probs=74.3

Q ss_pred             cChHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204         48 VTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        48 ~~~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  124 (189)
                      .........++..+.  ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....   .+++++++|+.+.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~  114 (266)
T 3ujc_A           38 SGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK  114 (266)
T ss_dssp             TTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC
T ss_pred             cchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC
Confidence            333444555555543  3789999999999999999987 899999999999999998876544   4899999999887


Q ss_pred             C-CCCCccEEEECCCCCCC
Q psy13204        125 A-PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       125 ~-~~~~~D~v~~npp~~~~  142 (189)
                      . +..+||+|+++..+++.
T Consensus       115 ~~~~~~fD~v~~~~~l~~~  133 (266)
T 3ujc_A          115 EFPENNFDLIYSRDAILAL  133 (266)
T ss_dssp             CCCTTCEEEEEEESCGGGS
T ss_pred             CCCCCcEEEEeHHHHHHhc
Confidence            5 56789999998777765

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.33  E-value=1.7e-12  Score=99.51  Aligned_cols=94  Identities=23%  Similarity=0.399  Sum_probs=76.7

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  138 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp  138 (189)
                      +++.+|||+|||+|.++..+++.  +.+++|+|+++.+++.+++++...++ .+++++++|+.+.. +..+||+|+++..
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCcEEEEcccccCCCCCCCeeEEEEech
Confidence            44889999999999999999988  67999999999999999999998888 48999999999875 5678999999877


Q ss_pred             CCCCcccc-ccccccccCc
Q psy13204        139 WGGPEYAR-SSFSIDNIFP  156 (189)
Q Consensus       139 ~~~~~~~~-~~~~~~~~l~  156 (189)
                      ++...... ....+.++|+
T Consensus       115 l~~~~~~~~~l~~~~~~L~  133 (276)
T 3mgg_A          115 LEHLQSPEEALKSLKKVLK  133 (276)
T ss_dssp             GGGCSCHHHHHHHHHHHEE
T ss_pred             hhhcCCHHHHHHHHHHHcC
Confidence            76544332 2233445553

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.33  E-value=8.4e-13  Score=99.26  Aligned_cols=90  Identities=12%  Similarity=0.059  Sum_probs=71.6

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...     +++++++|+.+..++.+||+|++.-..++.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~  116 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQLPRRYDNIVLTHVLEHI  116 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCCSSCEEEEEEESCGGGC
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCcCCcccEEEEhhHHHhh
Confidence            477899999999999999999999999999999999999887532     789999999887667789999997666554


Q ss_pred             cccc-cccccc-ccCcC
Q psy13204        143 EYAR-SSFSID-NIFPE  157 (189)
Q Consensus       143 ~~~~-~~~~~~-~~l~~  157 (189)
                      .... ....+. +++++
T Consensus       117 ~~~~~~l~~~~~~~Lkp  133 (250)
T 2p7i_A          117 DDPVALLKRINDDWLAE  133 (250)
T ss_dssp             SSHHHHHHHHHHTTEEE
T ss_pred             cCHHHHHHHHHHHhcCC
Confidence            3222 233455 56643

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.32  E-value=1.8e-12  Score=95.74  Aligned_cols=92  Identities=20%  Similarity=0.208  Sum_probs=73.3

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ++++.+|||+|||+|.++..+++.+.+++|+|+++.+++.+++    .+. .+++++++|+.+..+..+||+|+++-.++
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~~~~~~D~v~~~~~l~  118 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWTPDRQWDAVFFAHWLA  118 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCCCSSCEEEEEEESCGG
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCCCCCceeEEEEechhh
Confidence            4457899999999999999999999999999999999999887    454 48999999998886778999999987766


Q ss_pred             CCccc---cccccccccCcC
Q psy13204        141 GPEYA---RSSFSIDNIFPE  157 (189)
Q Consensus       141 ~~~~~---~~~~~~~~~l~~  157 (189)
                      .....   .....+.+++++
T Consensus       119 ~~~~~~~~~~l~~~~~~L~p  138 (218)
T 3ou2_A          119 HVPDDRFEAFWESVRSAVAP  138 (218)
T ss_dssp             GSCHHHHHHHHHHHHHHEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCC
Confidence            55442   123344455533

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.32  E-value=3.4e-12  Score=99.42  Aligned_cols=78  Identities=15%  Similarity=0.302  Sum_probs=67.6

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---C---CCCccEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---P---SLQGDVV  133 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~---~~~~D~v  133 (189)
                      +++.+|||+|||+|+++..+++.  +.+|+|+|+|+.+++.|++++..++  .+++++++|+.+..   .   ...||.|
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~D~V  102 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKVDGI  102 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence            34789999999999999999987  5799999999999999999998777  48999999987753   1   1479999


Q ss_pred             EECCCCCC
Q psy13204        134 FLSPPWGG  141 (189)
Q Consensus       134 ~~npp~~~  141 (189)
                      ++|||+..
T Consensus       103 l~D~gvSs  110 (301)
T 1m6y_A          103 LMDLGVST  110 (301)
T ss_dssp             EEECSCCH
T ss_pred             EEcCccch
Confidence            99999864

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.32  E-value=6.2e-12  Score=91.00  Aligned_cols=90  Identities=17%  Similarity=0.019  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC
Q psy13204         51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL  128 (189)
Q Consensus        51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  128 (189)
                      +.+...+...+++..+|||+|||+|.+++.++..  +.+++|+|+|+.|++.+++++..+|...++++  .|.....+..
T Consensus        37 d~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~  114 (200)
T 3fzg_A           37 NDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKG  114 (200)
T ss_dssp             HHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTS
T ss_pred             HHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCC
Confidence            4455566667777899999999999999999776  67999999999999999999999998445655  5555445667


Q ss_pred             CccEEEECCCCCCC
Q psy13204        129 QGDVVFLSPPWGGP  142 (189)
Q Consensus       129 ~~D~v~~npp~~~~  142 (189)
                      .||+|++.--++..
T Consensus       115 ~~DvVLa~k~LHlL  128 (200)
T 3fzg_A          115 TYDVVFLLKMLPVL  128 (200)
T ss_dssp             EEEEEEEETCHHHH
T ss_pred             CcChhhHhhHHHhh
Confidence            89999986555543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.32  E-value=1.7e-11  Score=92.01  Aligned_cols=88  Identities=18%  Similarity=0.205  Sum_probs=75.1

Q ss_pred             HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCc
Q psy13204         51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG  130 (189)
Q Consensus        51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  130 (189)
                      ..+.+.+...++++.+|||+|||+|.++..+++. .+++|+|+++.+++.|+++....+.  +++++++|+.+.....+|
T Consensus        21 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~f   97 (243)
T 3d2l_A           21 PEWVAWVLEQVEPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNR--HVDFWVQDMRELELPEPV   97 (243)
T ss_dssp             HHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCGGGCCCSSCE
T ss_pred             HHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCC--ceEEEEcChhhcCCCCCc
Confidence            3456667777887899999999999999999988 8999999999999999999887764  789999999887644789


Q ss_pred             cEEEECC-CCCC
Q psy13204        131 DVVFLSP-PWGG  141 (189)
Q Consensus       131 D~v~~np-p~~~  141 (189)
                      |+|+++. +++.
T Consensus        98 D~v~~~~~~~~~  109 (243)
T 3d2l_A           98 DAITILCDSLNY  109 (243)
T ss_dssp             EEEEECTTGGGG
T ss_pred             CEEEEeCCchhh
Confidence            9999975 5544

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.32  E-value=3.1e-11  Score=91.51  Aligned_cols=77  Identities=23%  Similarity=0.217  Sum_probs=68.5

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEeCCcccC-CCCCCccEEEEC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFAL-APSLQGDVVFLS  136 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~~D~v~~n  136 (189)
                      .++.+|||+|||+|.++..+++.   +.+++++|+++.+++.|++++..+ +. .++++.++|+.+. .+...||+|++|
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~~~~D~v~~~  173 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-ENVRFHLGKLEEAELEEAAYDGVALD  173 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-CCEEEEESCGGGCCCCTTCEEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCEEEEECchhhcCCCCCCcCEEEEC
Confidence            44889999999999999999988   679999999999999999999887 74 6899999999887 455789999999


Q ss_pred             CCC
Q psy13204        137 PPW  139 (189)
Q Consensus       137 pp~  139 (189)
                      +|.
T Consensus       174 ~~~  176 (258)
T 2pwy_A          174 LME  176 (258)
T ss_dssp             SSC
T ss_pred             CcC
Confidence            874

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.32  E-value=1.1e-12  Score=96.09  Aligned_cols=88  Identities=13%  Similarity=0.119  Sum_probs=71.0

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~  142 (189)
                      +.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++.      .+++++++|+.+.. +..+||+|+++..++..
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM  115 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhcC
Confidence            789999999999999999999999999999999999998872      37899999998875 56789999998777765


Q ss_pred             cccc---ccccccccCcC
Q psy13204        143 EYAR---SSFSIDNIFPE  157 (189)
Q Consensus       143 ~~~~---~~~~~~~~l~~  157 (189)
                      ....   ....+.+++++
T Consensus       116 ~~~~~~~~l~~~~~~L~p  133 (203)
T 3h2b_A          116 GPGELPDALVALRMAVED  133 (203)
T ss_dssp             CTTTHHHHHHHHHHTEEE
T ss_pred             CHHHHHHHHHHHHHHcCC
Confidence            4222   23344555533

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.32  E-value=1.1e-11  Score=92.47  Aligned_cols=87  Identities=23%  Similarity=0.292  Sum_probs=73.9

Q ss_pred             HHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC----CceEEEeCCcccCC-CCCCcc
Q psy13204         57 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS----HKIQFIQGDFFALA-PSLQGD  131 (189)
Q Consensus        57 ~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~-~~~~~D  131 (189)
                      +...++++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++....++.    .+++++++|+.+.. +..+||
T Consensus        24 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  103 (235)
T 3sm3_A           24 IHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFD  103 (235)
T ss_dssp             HHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEE
T ss_pred             HHHhCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCcee
Confidence            4445677899999999999999999999999999999999999999998776652    36899999998875 567899


Q ss_pred             EEEECCCCCCCc
Q psy13204        132 VVFLSPPWGGPE  143 (189)
Q Consensus       132 ~v~~npp~~~~~  143 (189)
                      +|+++..++...
T Consensus       104 ~v~~~~~l~~~~  115 (235)
T 3sm3_A          104 FAVMQAFLTSVP  115 (235)
T ss_dssp             EEEEESCGGGCC
T ss_pred             EEEEcchhhcCC
Confidence            999987777653

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.31  E-value=5.8e-12  Score=97.17  Aligned_cols=87  Identities=11%  Similarity=0.109  Sum_probs=69.4

Q ss_pred             HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCe----EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204         52 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQK----VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA  125 (189)
Q Consensus        52 ~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~----v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  125 (189)
                      .+.+.+++.+  .++.+|||+|||+|.++..+++.+.+    |+|+|+++.+++.++++.     ..+++++++|+.+..
T Consensus        29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~  103 (279)
T 3uzu_A           29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFD  103 (279)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCC
Confidence            3555555554  34889999999999999999998777    999999999999999883     248999999999875


Q ss_pred             CCC-------CccEEEECCCCCCCc
Q psy13204        126 PSL-------QGDVVFLSPPWGGPE  143 (189)
Q Consensus       126 ~~~-------~~D~v~~npp~~~~~  143 (189)
                      ...       ....|++|+||....
T Consensus       104 ~~~~~~~~~~~~~~vv~NlPY~iss  128 (279)
T 3uzu_A          104 FGSIARPGDEPSLRIIGNLPYNISS  128 (279)
T ss_dssp             GGGGSCSSSSCCEEEEEECCHHHHH
T ss_pred             hhHhcccccCCceEEEEccCccccH
Confidence            111       245799999998643

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.31  E-value=3.1e-11  Score=91.24  Aligned_cols=72  Identities=31%  Similarity=0.440  Sum_probs=65.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEEC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  136 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~n  136 (189)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++....+.  +++++++|+.+.....+||+|++.
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~v~~~  112 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEFDAVTMF  112 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSCEEEEEEC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccCCCccEEEEc
Confidence            378999999999999999999999999999999999999999988776  799999999987655689999974

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.31  E-value=1.9e-12  Score=98.10  Aligned_cols=104  Identities=20%  Similarity=0.148  Sum_probs=78.8

Q ss_pred             HHHHhCC--CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCcc
Q psy13204         56 HIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGD  131 (189)
Q Consensus        56 ~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D  131 (189)
                      .+...+.  ++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++..    ..+++++++|+.+.. +..+||
T Consensus        35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD  110 (253)
T 3g5l_A           35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAYN  110 (253)
T ss_dssp             HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCEE
T ss_pred             HHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCeE
Confidence            3444444  388999999999999999999877 99999999999999988765    248999999998875 467899


Q ss_pred             EEEECCCCCCCcccc-ccccccccCcCCCCchhHH
Q psy13204        132 VVFLSPPWGGPEYAR-SSFSIDNIFPEQGGGRRLF  165 (189)
Q Consensus       132 ~v~~npp~~~~~~~~-~~~~~~~~l~~~~~g~~~~  165 (189)
                      +|+++-.++...... ....+.++|++  ||..++
T Consensus       111 ~v~~~~~l~~~~~~~~~l~~~~~~Lkp--gG~l~~  143 (253)
T 3g5l_A          111 VVLSSLALHYIASFDDICKKVYINLKS--SGSFIF  143 (253)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEE--EEEEEE
T ss_pred             EEEEchhhhhhhhHHHHHHHHHHHcCC--CcEEEE
Confidence            999987776653322 23345556644  355444

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.31  E-value=7.5e-12  Score=105.53  Aligned_cols=81  Identities=14%  Similarity=0.092  Sum_probs=69.0

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEEC
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLS  136 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~n  136 (189)
                      .+..+.+|||+|||.|.++..+|+.|++|+|||.++.+++.|+..+...+. .++++.++++.+..   ...+||+|++-
T Consensus        63 ~~~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           63 ALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             HHTSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             hcCCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccEEEEC
Confidence            344477999999999999999999999999999999999999999988774 38999999998863   45689999995


Q ss_pred             CCCCC
Q psy13204        137 PPWGG  141 (189)
Q Consensus       137 pp~~~  141 (189)
                      -++++
T Consensus       142 e~~eh  146 (569)
T 4azs_A          142 SVFHH  146 (569)
T ss_dssp             SCHHH
T ss_pred             cchhc
Confidence            44443

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.31  E-value=3.1e-13  Score=102.43  Aligned_cols=86  Identities=20%  Similarity=0.286  Sum_probs=70.3

Q ss_pred             HHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C-CC
Q psy13204         53 VAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P-SL  128 (189)
Q Consensus        53 ~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~-~~  128 (189)
                      +.+.+++.+.  ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++..  +. .+++++++|+.+.. + ..
T Consensus        17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~-~~v~~~~~D~~~~~~~~~~   93 (245)
T 1yub_A           17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LN-TRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TC-SEEEECCSCCTTTTCCCSS
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cC-CceEEEECChhhcCcccCC
Confidence            4555555553  47799999999999999999999999999999999999887765  22 58999999999875 3 25


Q ss_pred             CccEEEECCCCCCC
Q psy13204        129 QGDVVFLSPPWGGP  142 (189)
Q Consensus       129 ~~D~v~~npp~~~~  142 (189)
                      +| .|++||||...
T Consensus        94 ~f-~vv~n~Py~~~  106 (245)
T 1yub_A           94 RY-KIVGNIPYHLS  106 (245)
T ss_dssp             EE-EEEEECCSSSC
T ss_pred             Cc-EEEEeCCcccc
Confidence            68 89999999874

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.30  E-value=1.5e-11  Score=101.52  Aligned_cols=77  Identities=18%  Similarity=0.220  Sum_probs=68.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ++.+|||+|||+|.+++.+++.+ .+|+|+|+++ +++.|++++..+++.++++++++|+.+.....+||+|++++|..
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  235 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHH
T ss_pred             CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchH
Confidence            37899999999999999999885 4899999998 99999999999998778999999998865346899999999843

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.30  E-value=2e-11  Score=91.55  Aligned_cols=93  Identities=13%  Similarity=0.073  Sum_probs=73.5

Q ss_pred             cccChHHHHHHHHHhC-----CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Q psy13204         46 YSVTPEKVAQHIASRC-----KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI  117 (189)
Q Consensus        46 ~~~~~~~~~~~~~~~~-----~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  117 (189)
                      |.+.+..+++.+..-+     ++|.+|||+|||+|.++..+++.   ..+|+|+|+++++++.+++++...   .++..+
T Consensus        55 w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V  131 (233)
T 4df3_A           55 WNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPI  131 (233)
T ss_dssp             CCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEE
T ss_pred             ECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEE
Confidence            4455556777665533     45999999999999999999987   468999999999999998876543   478889


Q ss_pred             eCCcccCC----CCCCccEEEECCCCCC
Q psy13204        118 QGDFFALA----PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       118 ~~d~~~~~----~~~~~D~v~~npp~~~  141 (189)
                      .+|..+..    ....+|+|++|.++..
T Consensus       132 ~~d~~~p~~~~~~~~~vDvVf~d~~~~~  159 (233)
T 4df3_A          132 LGDARFPEKYRHLVEGVDGLYADVAQPE  159 (233)
T ss_dssp             ESCTTCGGGGTTTCCCEEEEEECCCCTT
T ss_pred             EEeccCccccccccceEEEEEEeccCCh
Confidence            88876543    3457999999988764

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.30  E-value=2.1e-11  Score=100.07  Aligned_cols=84  Identities=19%  Similarity=0.267  Sum_probs=72.9

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--C-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--C-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFL  135 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~  135 (189)
                      .++.+|||+|||+|+.+..+++.  + .+|+++|+++.+++.+++|+...|+ .+++++++|+.+..   +...||+|++
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEEEcChhhcchhhccCCCCEEEE
Confidence            44889999999999999999885  3 6899999999999999999999998 47999999998875   2257999999


Q ss_pred             CCCCCCCcccc
Q psy13204        136 SPPWGGPEYAR  146 (189)
Q Consensus       136 npp~~~~~~~~  146 (189)
                      ||||.+.+...
T Consensus       337 D~Pcsg~g~~~  347 (450)
T 2yxl_A          337 DAPCTSSGTIG  347 (450)
T ss_dssp             ECCCCCGGGTT
T ss_pred             cCCCCCCeeec
Confidence            99998876543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.30  E-value=8.6e-12  Score=93.07  Aligned_cols=96  Identities=15%  Similarity=0.049  Sum_probs=75.4

Q ss_pred             cccccChHH--HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEe
Q psy13204         44 SWYSVTPEK--VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  118 (189)
Q Consensus        44 ~~~~~~~~~--~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~  118 (189)
                      ..+...++.  +...+... ..+.+|||+|||+|..++.+++.   +.+++++|+++.+++.|++++...++..++++++
T Consensus        49 ~~~~~~~~~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~  127 (229)
T 2avd_A           49 GDSMMTCEQAQLLANLARL-IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL  127 (229)
T ss_dssp             GGGSCCHHHHHHHHHHHHH-TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CCCccCHHHHHHHHHHHHh-cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE
Confidence            445555543  22223333 34789999999999999999986   6799999999999999999999998866899999


Q ss_pred             CCcccCCC----C---CCccEEEECCCCC
Q psy13204        119 GDFFALAP----S---LQGDVVFLSPPWG  140 (189)
Q Consensus       119 ~d~~~~~~----~---~~~D~v~~npp~~  140 (189)
                      +|+.+..+    .   .+||+|++|++..
T Consensus       128 ~d~~~~~~~~~~~~~~~~~D~v~~d~~~~  156 (229)
T 2avd_A          128 KPALETLDELLAAGEAGTFDVAVVDADKE  156 (229)
T ss_dssp             SCHHHHHHHHHHTTCTTCEEEEEECSCST
T ss_pred             cCHHHHHHHHHhcCCCCCccEEEECCCHH
Confidence            99876531    1   6899999999843

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.30  E-value=3.4e-11  Score=88.97  Aligned_cols=88  Identities=18%  Similarity=0.133  Sum_probs=73.1

Q ss_pred             HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-
Q psy13204         53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-  126 (189)
Q Consensus        53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-  126 (189)
                      +...+...+  .++.+|||+|||+|.++..+++.+   .+++++|+++.+++.++++....++ .++++.++|.....+ 
T Consensus        65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~  143 (215)
T 2yxe_A           65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-DNVIVIVGDGTLGYEP  143 (215)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEESCGGGCCGG
T ss_pred             HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCC
Confidence            444555544  347899999999999999999875   7999999999999999999988887 469999999866543 


Q ss_pred             CCCccEEEECCCCCC
Q psy13204        127 SLQGDVVFLSPPWGG  141 (189)
Q Consensus       127 ~~~~D~v~~npp~~~  141 (189)
                      ...||+|+++.+++.
T Consensus       144 ~~~fD~v~~~~~~~~  158 (215)
T 2yxe_A          144 LAPYDRIYTTAAGPK  158 (215)
T ss_dssp             GCCEEEEEESSBBSS
T ss_pred             CCCeeEEEECCchHH
Confidence            568999999988775

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.30  E-value=9.9e-13  Score=100.44  Aligned_cols=79  Identities=9%  Similarity=-0.189  Sum_probs=59.7

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcc-cCCCCCCccEEEECCCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF-ALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~D~v~~npp~~  140 (189)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++++....+  ...+...+.. ......+||+|+++..++
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v--~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~  121 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCV--TIDLLDITAEIPKELAGHFDFVLNDRLIN  121 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCC--EEEECCTTSCCCGGGTTCCSEEEEESCGG
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccc--eeeeeecccccccccCCCccEEEEhhhhH
Confidence            3488999999999999999999999999999999999999988754421  3333333320 011245899999998877


Q ss_pred             CC
Q psy13204        141 GP  142 (189)
Q Consensus       141 ~~  142 (189)
                      +.
T Consensus       122 ~~  123 (261)
T 3iv6_A          122 RF  123 (261)
T ss_dssp             GS
T ss_pred             hC
Confidence            54

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.30  E-value=2.4e-11  Score=90.73  Aligned_cols=87  Identities=21%  Similarity=0.169  Sum_probs=72.3

Q ss_pred             HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204         52 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL  128 (189)
Q Consensus        52 ~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~  128 (189)
                      .+...+...+  .++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++....+   +++++++|+.+.. ...
T Consensus        57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~  133 (231)
T 1vbf_A           57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEEK  133 (231)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGGC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccCC
Confidence            3455555544  347899999999999999999999999999999999999999887554   7899999998744 356


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      +||+|+++.+++.
T Consensus       134 ~fD~v~~~~~~~~  146 (231)
T 1vbf_A          134 PYDRVVVWATAPT  146 (231)
T ss_dssp             CEEEEEESSBBSS
T ss_pred             CccEEEECCcHHH
Confidence            8999999988765

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.30  E-value=1e-11  Score=93.03  Aligned_cols=78  Identities=22%  Similarity=0.333  Sum_probs=69.4

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----CCCccEEEEC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFLS  136 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~n  136 (189)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.|++++...++..+++++++|+.+..+    ...||+|++|
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  133 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID  133 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence            4789999999999999999988  689999999999999999999999886679999999988531    4689999999


Q ss_pred             CCCC
Q psy13204        137 PPWG  140 (189)
Q Consensus       137 pp~~  140 (189)
                      ++..
T Consensus       134 ~~~~  137 (233)
T 2gpy_A          134 AAKG  137 (233)
T ss_dssp             GGGS
T ss_pred             CCHH
Confidence            8864

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.30  E-value=1.8e-11  Score=89.82  Aligned_cols=73  Identities=16%  Similarity=0.100  Sum_probs=66.0

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  137 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~np  137 (189)
                      +.+|||+|||+|.++..+++.  +.+++|+|+++.+++.|++++...++. ++++.++|+.+..+..+||+|+++.
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~  140 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSEPPFDGVISRA  140 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCCSCEEEEECSC
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCccCCcCEEEEec
Confidence            789999999999999999987  679999999999999999999998884 5999999999876667899999864

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.29  E-value=3.6e-12  Score=94.44  Aligned_cols=90  Identities=12%  Similarity=0.144  Sum_probs=72.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      ++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++..     .+++++++|+.+.....+||+|+++..++..
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~  119 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVPTSIDTIVSTYAFHHL  119 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCCSCCSEEEEESCGGGS
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCCCCeEEEEECcchhcC
Confidence            47899999999999999999999999999999999999988764     3789999999987644889999998777664


Q ss_pred             cccc---ccccccccCcC
Q psy13204        143 EYAR---SSFSIDNIFPE  157 (189)
Q Consensus       143 ~~~~---~~~~~~~~l~~  157 (189)
                      ....   ....+.+++++
T Consensus       120 ~~~~~~~~l~~~~~~Lkp  137 (220)
T 3hnr_A          120 TDDEKNVAIAKYSQLLNK  137 (220)
T ss_dssp             CHHHHHHHHHHHHHHSCT
T ss_pred             ChHHHHHHHHHHHHhcCC
Confidence            4332   22334455533

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.29  E-value=1e-11  Score=94.30  Aligned_cols=73  Identities=16%  Similarity=0.122  Sum_probs=65.4

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----CCCccEEEEC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFLS  136 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~n  136 (189)
                      .+.+|||+|||+|..++.++..  +.+|+++|+++.+++.|++|+...++. +++++++|+.+...    ..+||+|+++
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEEEC
Confidence            3789999999999999999886  679999999999999999999999984 69999999988753    3689999995

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.29  E-value=7.6e-12  Score=95.03  Aligned_cols=87  Identities=20%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CC
Q psy13204         52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PS  127 (189)
Q Consensus        52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~  127 (189)
                      .+.+.+++.+.  ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++    +. .+++++++|+.+.. +.
T Consensus        18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~~-~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----GD-ERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----CC-TTEEEECSCTTTCCGGG
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----cC-CCeEEEEcchhhCChhH
Confidence            45666666654  37899999999999999999985 8999999999999999877    22 48999999999875 21


Q ss_pred             C-CccEEEECCCCCCCc
Q psy13204        128 L-QGDVVFLSPPWGGPE  143 (189)
Q Consensus       128 ~-~~D~v~~npp~~~~~  143 (189)
                      . ....|++||||+...
T Consensus        93 ~~~~~~vv~NlPy~i~~  109 (249)
T 3ftd_A           93 LGKELKVVGNLPYNVAS  109 (249)
T ss_dssp             SCSSEEEEEECCTTTHH
T ss_pred             ccCCcEEEEECchhccH
Confidence            1 134899999998643

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.28  E-value=3.6e-11  Score=86.96  Aligned_cols=79  Identities=16%  Similarity=0.260  Sum_probs=66.6

Q ss_pred             HHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEE
Q psy13204         55 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVV  133 (189)
Q Consensus        55 ~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v  133 (189)
                      ..+...++++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++..      +++++++|+.+.. +...||+|
T Consensus        38 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~~~D~i  111 (195)
T 3cgg_A           38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQISETDFDLI  111 (195)
T ss_dssp             HHHHHHSCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCCCCCCEEEE
T ss_pred             HHHHHhccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCCCCCceeEE
Confidence            3444456678899999999999999999999999999999999999988752      6899999998864 45689999


Q ss_pred             EECCCC
Q psy13204        134 FLSPPW  139 (189)
Q Consensus       134 ~~npp~  139 (189)
                      +++++.
T Consensus       112 ~~~~~~  117 (195)
T 3cgg_A          112 VSAGNV  117 (195)
T ss_dssp             EECCCC
T ss_pred             EECCcH
Confidence            998553

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.28  E-value=1.2e-11  Score=93.12  Aligned_cols=74  Identities=11%  Similarity=0.107  Sum_probs=65.3

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----CCCccEEEEC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFLS  136 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~n  136 (189)
                      .+.+|||+|||+|..++.+++.  +.+|+|+|+++.+++.|++++...++. +++++++|+.+...    ..+||+|+++
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEEEe
Confidence            4789999999999999999854  779999999999999999999999884 79999999987652    4689999997


Q ss_pred             C
Q psy13204        137 P  137 (189)
Q Consensus       137 p  137 (189)
                      .
T Consensus       149 ~  149 (240)
T 1xdz_A          149 A  149 (240)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.27  E-value=1.6e-11  Score=100.16  Aligned_cols=82  Identities=24%  Similarity=0.317  Sum_probs=71.9

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEEC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLS  136 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~n  136 (189)
                      .++.+|||+|||+|+.+..+++..  .+|+++|+++.+++.+++|+...++  +++++++|+.+..   +...||+|++|
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D  322 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDRILLD  322 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcccCCCCEEEEe
Confidence            448899999999999999999874  6999999999999999999999987  5799999998764   34689999999


Q ss_pred             CCCCCCccc
Q psy13204        137 PPWGGPEYA  145 (189)
Q Consensus       137 pp~~~~~~~  145 (189)
                      |||.+.+..
T Consensus       323 ~Pcsg~g~~  331 (429)
T 1sqg_A          323 APCSATGVI  331 (429)
T ss_dssp             CCCCCGGGT
T ss_pred             CCCCccccc
Confidence            999986643

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.27  E-value=2.4e-11  Score=90.57  Aligned_cols=81  Identities=15%  Similarity=0.101  Sum_probs=69.0

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCC-------eEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEeCCcccCC----
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQ-------KVISIDIDPAKLRLAQHNASVYGV----SHKIQFIQGDFFALA----  125 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~-------~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~----  125 (189)
                      ++++.+|||+|||+|.++..+++...       +|+++|+++.+++.|+++....++    ..+++++++|..+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            45588999999999999999998754       999999999999999999988872    258999999998753    


Q ss_pred             -CCCCccEEEECCCCCC
Q psy13204        126 -PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 -~~~~~D~v~~npp~~~  141 (189)
                       ....||+|+++.+++.
T Consensus       158 ~~~~~fD~I~~~~~~~~  174 (227)
T 2pbf_A          158 KELGLFDAIHVGASASE  174 (227)
T ss_dssp             HHHCCEEEEEECSBBSS
T ss_pred             ccCCCcCEEEECCchHH
Confidence             2357999999988764

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.27  E-value=7.4e-11  Score=86.56  Aligned_cols=81  Identities=17%  Similarity=0.114  Sum_probs=66.9

Q ss_pred             hCCCCCEEEEecCCCChHH-HHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECC
Q psy13204         60 RCKASDVVIDGFCGCGGNT-IQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  137 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~-~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~np  137 (189)
                      ...++.+|||+|||+|..+ ..+++.+.+++|+|+|+.+++.|++++...+.  +++++++|+.+.. +..+||+|+++.
T Consensus        20 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~   97 (209)
T 2p8j_A           20 ESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPFKDESMSFVYSYG   97 (209)
T ss_dssp             HSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             ccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCCCCCCceeEEEEcC
Confidence            4555889999999999974 45566688999999999999999999887764  7899999998865 457899999976


Q ss_pred             CCCCC
Q psy13204        138 PWGGP  142 (189)
Q Consensus       138 p~~~~  142 (189)
                      +.++.
T Consensus        98 ~l~~~  102 (209)
T 2p8j_A           98 TIFHM  102 (209)
T ss_dssp             CGGGS
T ss_pred             hHHhC
Confidence            66554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.27  E-value=1.7e-11  Score=92.11  Aligned_cols=82  Identities=12%  Similarity=0.079  Sum_probs=66.7

Q ss_pred             HHHHHHHh-CCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC--C-CC
Q psy13204         53 VAQHIASR-CKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL--A-PS  127 (189)
Q Consensus        53 ~~~~~~~~-~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~-~~  127 (189)
                      +...+... ..++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++....+  .+++++++|+.+.  . ++
T Consensus        49 ~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~  126 (236)
T 1zx0_A           49 YMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPD  126 (236)
T ss_dssp             HHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCT
T ss_pred             HHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCC
Confidence            33444333 34578999999999999999987654 89999999999999999887666  3899999999876  2 56


Q ss_pred             CCccEEEEC
Q psy13204        128 LQGDVVFLS  136 (189)
Q Consensus       128 ~~~D~v~~n  136 (189)
                      .+||+|++|
T Consensus       127 ~~fD~V~~d  135 (236)
T 1zx0_A          127 GHFDGILYD  135 (236)
T ss_dssp             TCEEEEEEC
T ss_pred             CceEEEEEC
Confidence            789999995

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.27  E-value=7.1e-12  Score=95.01  Aligned_cols=97  Identities=14%  Similarity=0.153  Sum_probs=75.2

Q ss_pred             HHHHHhCC--CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCc
Q psy13204         55 QHIASRCK--ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG  130 (189)
Q Consensus        55 ~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  130 (189)
                      ..++..+.  ++.+|||+|||+|.++..+++.  +.+++|+|+++.+++.++++     . .+++++++|+.+..+..+|
T Consensus        23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~~~~f   96 (259)
T 2p35_A           23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----L-PNTNFGKADLATWKPAQKA   96 (259)
T ss_dssp             HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----S-TTSEEEECCTTTCCCSSCE
T ss_pred             HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----C-CCcEEEECChhhcCccCCc
Confidence            34444443  3789999999999999999988  88999999999999999887     1 4789999999887656789


Q ss_pred             cEEEECCCCCCCcccc-ccccccccCcC
Q psy13204        131 DVVFLSPPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       131 D~v~~npp~~~~~~~~-~~~~~~~~l~~  157 (189)
                      |+|+++..+++..... ....+.+++++
T Consensus        97 D~v~~~~~l~~~~~~~~~l~~~~~~L~p  124 (259)
T 2p35_A           97 DLLYANAVFQWVPDHLAVLSQLMDQLES  124 (259)
T ss_dssp             EEEEEESCGGGSTTHHHHHHHHGGGEEE
T ss_pred             CEEEEeCchhhCCCHHHHHHHHHHhcCC
Confidence            9999988887754322 23345556643

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.27  E-value=2e-11  Score=90.03  Aligned_cols=76  Identities=21%  Similarity=0.265  Sum_probs=66.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSP  137 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~np  137 (189)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...++.++++++++|+.+..  ... ||+|++|.
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            3789999999999999999987   67999999999999999999998888667999999997753  234 99999996


Q ss_pred             CC
Q psy13204        138 PW  139 (189)
Q Consensus       138 p~  139 (189)
                      +.
T Consensus       135 ~~  136 (210)
T 3c3p_A          135 DV  136 (210)
T ss_dssp             TT
T ss_pred             Ch
Confidence            54

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.26  E-value=3.7e-12  Score=98.50  Aligned_cols=82  Identities=18%  Similarity=0.172  Sum_probs=67.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC---CceEEEeCCcccCC----CCCCccEEEE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS---HKIQFIQGDFFALA----PSLQGDVVFL  135 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~~----~~~~~D~v~~  135 (189)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++....+..   .++.+..+|+.+..    +..+||+|++
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~  136 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC  136 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEE
Confidence            4789999999999999999999999999999999999999887543321   36788999988754    5678999999


Q ss_pred             C-CCCCCCcc
Q psy13204        136 S-PPWGGPEY  144 (189)
Q Consensus       136 n-pp~~~~~~  144 (189)
                      . ..+++...
T Consensus       137 ~g~~l~~~~~  146 (293)
T 3thr_A          137 LGNSFAHLPD  146 (293)
T ss_dssp             CTTCGGGSCC
T ss_pred             cChHHhhcCc
Confidence            7 56655443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.26  E-value=4.5e-11  Score=89.02  Aligned_cols=81  Identities=21%  Similarity=0.088  Sum_probs=68.3

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEeCCcccCC-CCCCccE
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGV----SHKIQFIQGDFFALA-PSLQGDV  132 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~D~  132 (189)
                      .+++.+|||+|||+|..+..+++. +  .+|+++|+++.+++.+++++...+.    ..+++++++|..+.. ....||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            345889999999999999999887 4  6899999999999999999987653    357999999987654 3467999


Q ss_pred             EEECCCCCC
Q psy13204        133 VFLSPPWGG  141 (189)
Q Consensus       133 v~~npp~~~  141 (189)
                      |+++.++..
T Consensus       155 i~~~~~~~~  163 (226)
T 1i1n_A          155 IHVGAAAPV  163 (226)
T ss_dssp             EEECSBBSS
T ss_pred             EEECCchHH
Confidence            999988754

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.26  E-value=3.1e-12  Score=96.79  Aligned_cols=77  Identities=18%  Similarity=0.123  Sum_probs=68.6

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-------CCCccE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-------SLQGDV  132 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~D~  132 (189)
                      .+.+|||+|||+|..++.+++.   +.+|+++|+++++++.|++++...++.++++++++|+.+..+       ..+||+
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~  139 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF  139 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence            3789999999999999999985   679999999999999999999999987789999999987652       478999


Q ss_pred             EEECCCC
Q psy13204        133 VFLSPPW  139 (189)
Q Consensus       133 v~~npp~  139 (189)
                      |++|.+.
T Consensus       140 V~~d~~~  146 (242)
T 3r3h_A          140 IFIDADK  146 (242)
T ss_dssp             EEEESCG
T ss_pred             EEEcCCh
Confidence            9999873

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.26  E-value=3.2e-11  Score=93.64  Aligned_cols=89  Identities=20%  Similarity=0.237  Sum_probs=71.1

Q ss_pred             HHHHHHHhCC-CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC--CceEEEeCCcccCCCCCC
Q psy13204         53 VAQHIASRCK-ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS--HKIQFIQGDFFALAPSLQ  129 (189)
Q Consensus        53 ~~~~~~~~~~-~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~  129 (189)
                      ....++..+. .+.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++....+..  .+++++++|+.+.....+
T Consensus        71 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  150 (299)
T 3g2m_A           71 EAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKR  150 (299)
T ss_dssp             HHHHHHHHHCCCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCC
T ss_pred             HHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCC
Confidence            3444444443 3569999999999999999999999999999999999999998876531  379999999998766678


Q ss_pred             ccEEEEC-CCCCC
Q psy13204        130 GDVVFLS-PPWGG  141 (189)
Q Consensus       130 ~D~v~~n-pp~~~  141 (189)
                      ||+|++. ..++.
T Consensus       151 fD~v~~~~~~~~~  163 (299)
T 3g2m_A          151 FGTVVISSGSINE  163 (299)
T ss_dssp             EEEEEECHHHHTT
T ss_pred             cCEEEECCccccc
Confidence            9988863 33443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.26  E-value=9.4e-11  Score=90.02  Aligned_cols=85  Identities=20%  Similarity=0.208  Sum_probs=70.7

Q ss_pred             HHHHHHhC--CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh-C-CCCceEEEeCCcccCC-
Q psy13204         54 AQHIASRC--KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVY-G-VSHKIQFIQGDFFALA-  125 (189)
Q Consensus        54 ~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~-~-~~~~~~~~~~d~~~~~-  125 (189)
                      ...++..+  .++.+|||+|||+|.++..+++.   +.+++++|+++.+++.|++++... + +..+++++++|+.+.. 
T Consensus        88 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~  167 (280)
T 1i9g_A           88 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL  167 (280)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred             HHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence            33444433  44889999999999999999986   679999999999999999999887 5 3368999999998874 


Q ss_pred             CCCCccEEEECCC
Q psy13204        126 PSLQGDVVFLSPP  138 (189)
Q Consensus       126 ~~~~~D~v~~npp  138 (189)
                      +...||+|++|+|
T Consensus       168 ~~~~~D~v~~~~~  180 (280)
T 1i9g_A          168 PDGSVDRAVLDML  180 (280)
T ss_dssp             CTTCEEEEEEESS
T ss_pred             CCCceeEEEECCc
Confidence            4568999999887

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.26  E-value=8.3e-12  Score=91.95  Aligned_cols=80  Identities=16%  Similarity=0.125  Sum_probs=65.7

Q ss_pred             HHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccE
Q psy13204         55 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDV  132 (189)
Q Consensus        55 ~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~  132 (189)
                      +.+.....++.+|||+|||+|.++..+   +. +++|+|+++.+++.++++.      .+++++++|+.+.. +..+||+
T Consensus        28 ~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~   98 (211)
T 2gs9_A           28 RALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDV   98 (211)
T ss_dssp             HHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEE
T ss_pred             HHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEE
Confidence            334444456889999999999999888   66 9999999999999998876      37899999998865 5568999


Q ss_pred             EEECCCCCCCc
Q psy13204        133 VFLSPPWGGPE  143 (189)
Q Consensus       133 v~~npp~~~~~  143 (189)
                      |+++...++..
T Consensus        99 v~~~~~l~~~~  109 (211)
T 2gs9_A           99 VLLFTTLEFVE  109 (211)
T ss_dssp             EEEESCTTTCS
T ss_pred             EEEcChhhhcC
Confidence            99988877654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.25  E-value=5.1e-12  Score=95.09  Aligned_cols=101  Identities=17%  Similarity=0.109  Sum_probs=74.4

Q ss_pred             cChHHHHHHHHHh---CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204         48 VTPEKVAQHIASR---CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        48 ~~~~~~~~~~~~~---~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  124 (189)
                      ...+.+...+...   ++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++         ++++++|..+.
T Consensus        23 ~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~   93 (240)
T 3dli_A           23 GSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK---------FNVVKSDAIEY   93 (240)
T ss_dssp             CCHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT---------SEEECSCHHHH
T ss_pred             CCHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh---------cceeeccHHHH
Confidence            3444455544433   34578999999999999999999999999999999999998765         68889998774


Q ss_pred             ---CCCCCccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204        125 ---APSLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       125 ---~~~~~~D~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                         .+..+||+|+++-.+++.....   ....+.++|++
T Consensus        94 ~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~Lkp  132 (240)
T 3dli_A           94 LKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKY  132 (240)
T ss_dssp             HHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCT
T ss_pred             hhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCC
Confidence               2567899999987776654331   22344555543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.25  E-value=4.8e-12  Score=96.92  Aligned_cols=85  Identities=18%  Similarity=0.101  Sum_probs=69.8

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-C--CeEEEEeCCHH------HHHHHHHHHHHhCCCCceEEEeCC-cc--cCC-CC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPA------KLRLAQHNASVYGVSHKIQFIQGD-FF--ALA-PS  127 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~--~~v~~vD~~~~------~~~~a~~~~~~~~~~~~~~~~~~d-~~--~~~-~~  127 (189)
                      ++++.+|||+|||+|.++..+++. +  .+++|+|+++.      +++.|++++...++..+++++++| ..  ... +.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  120 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIAD  120 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCC
Confidence            345889999999999999999987 4  79999999997      999999999888775689999998 32  222 45


Q ss_pred             CCccEEEECCCCCCCccc
Q psy13204        128 LQGDVVFLSPPWGGPEYA  145 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~~~  145 (189)
                      .+||+|+++.+++.....
T Consensus       121 ~~fD~v~~~~~l~~~~~~  138 (275)
T 3bkx_A          121 QHFDRVVLAHSLWYFASA  138 (275)
T ss_dssp             CCCSEEEEESCGGGSSCH
T ss_pred             CCEEEEEEccchhhCCCH
Confidence            789999999888765433

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.25  E-value=6.2e-11  Score=91.52  Aligned_cols=82  Identities=21%  Similarity=0.222  Sum_probs=70.4

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEEC
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLS  136 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~n  136 (189)
                      .+.++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++....+...+++++++|+.+..  +..+||+|+++
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence            456688999999999999999988865 899999999999999999988777567999999998764  45689999998


Q ss_pred             CCCCC
Q psy13204        137 PPWGG  141 (189)
Q Consensus       137 pp~~~  141 (189)
                      ...+.
T Consensus       141 ~~l~~  145 (298)
T 1ri5_A          141 FSFHY  145 (298)
T ss_dssp             SCGGG
T ss_pred             chhhh
Confidence            66643

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.24  E-value=6.6e-11  Score=88.22  Aligned_cols=73  Identities=19%  Similarity=0.145  Sum_probs=62.5

Q ss_pred             CCCEEEEecCCCChHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFL  135 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~  135 (189)
                      ++.+|||+|||+|.++..+++. +  .+|+|+|+++.+++.+++++...   .+++++++|+.+..    ...+||+|++
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceEEEE
Confidence            4789999999999999999976 3  78999999999999999888654   48999999998732    2357999999


Q ss_pred             CCC
Q psy13204        136 SPP  138 (189)
Q Consensus       136 npp  138 (189)
                      |+|
T Consensus       150 ~~~  152 (227)
T 1g8a_A          150 DVA  152 (227)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            988

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.24  E-value=5.2e-11  Score=89.40  Aligned_cols=88  Identities=19%  Similarity=0.215  Sum_probs=71.2

Q ss_pred             HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-CC
Q psy13204         53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SL  128 (189)
Q Consensus        53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~  128 (189)
                      +...+.+.+  .++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|+++....++ .+++++++|.....+ ..
T Consensus        79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~  157 (235)
T 1jg1_A           79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKA  157 (235)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGC
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEECCcccCCCCCC
Confidence            444444443  347899999999999999999886 8999999999999999999998888 469999999744333 33


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      .||+|+++.+...
T Consensus       158 ~fD~Ii~~~~~~~  170 (235)
T 1jg1_A          158 PYDVIIVTAGAPK  170 (235)
T ss_dssp             CEEEEEECSBBSS
T ss_pred             CccEEEECCcHHH
Confidence            5999999887664

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.24  E-value=3.3e-11  Score=97.98  Aligned_cols=110  Identities=17%  Similarity=0.208  Sum_probs=76.1

Q ss_pred             ccChHHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh-C-CeEEEEeCCHHHHHHH-------HHHHHHhCCC-Cce
Q psy13204         47 SVTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLA-------QHNASVYGVS-HKI  114 (189)
Q Consensus        47 ~~~~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~-~-~~v~~vD~~~~~~~~a-------~~~~~~~~~~-~~~  114 (189)
                      +..+. +...+++.+  .++.+|||+|||+|.+++.+++. + .+|+|+|+++.+++.|       ++++...|+. .++
T Consensus       225 et~p~-~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV  303 (433)
T 1u2z_A          225 ELLPN-FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV  303 (433)
T ss_dssp             CBCHH-HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred             cccHH-HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCce
Confidence            34444 344444544  34889999999999999999986 4 4799999999999998       8888888842 589


Q ss_pred             EEEeCCcccCC-----CCCCccEEEECCCCCCCccccccccccccCcC
Q psy13204        115 QFIQGDFFALA-----PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       115 ~~~~~d~~~~~-----~~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~  157 (189)
                      +++++|.....     ....||+|++|......+.......+.+.|++
T Consensus       304 ~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKp  351 (433)
T 1u2z_A          304 EFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKV  351 (433)
T ss_dssp             EEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCT
T ss_pred             EEEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCC
Confidence            99998654321     13579999998554332222222345556644

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=9e-12  Score=93.88  Aligned_cols=95  Identities=15%  Similarity=0.212  Sum_probs=73.4

Q ss_pred             HhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC------CCCccE
Q psy13204         59 SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP------SLQGDV  132 (189)
Q Consensus        59 ~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~D~  132 (189)
                      ..+.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++..   . .+++++++|+.+...      ...||+
T Consensus        52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~---~-~~~~~~~~d~~~~~~~~~~~~~~~~d~  127 (245)
T 3ggd_A           52 LLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT---A-ANISYRLLDGLVPEQAAQIHSEIGDAN  127 (245)
T ss_dssp             TTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC---C-TTEEEEECCTTCHHHHHHHHHHHCSCE
T ss_pred             hccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc---c-cCceEEECcccccccccccccccCccE
Confidence            334557899999999999999999998899999999999999988762   2 378999999987541      124899


Q ss_pred             EEECCCCCCCcccc---ccccccccCcC
Q psy13204        133 VFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       133 v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      |+++..++......   ....+.++|++
T Consensus       128 v~~~~~~~~~~~~~~~~~l~~~~~~Lkp  155 (245)
T 3ggd_A          128 IYMRTGFHHIPVEKRELLGQSLRILLGK  155 (245)
T ss_dssp             EEEESSSTTSCGGGHHHHHHHHHHHHTT
T ss_pred             EEEcchhhcCCHHHHHHHHHHHHHHcCC
Confidence            99998888765332   22345555644

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.24  E-value=5.9e-12  Score=94.52  Aligned_cols=97  Identities=19%  Similarity=0.161  Sum_probs=73.9

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~  140 (189)
                      ++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++...    .+++++++|+.+.. +..+||+|+++.+++
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  118 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDLAYSSLALH  118 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceEEEEecccc
Confidence            478999999999999999999888 999999999999999877532    26899999998865 457899999988776


Q ss_pred             CCcccc-ccccccccCcCCCCchhHH
Q psy13204        141 GPEYAR-SSFSIDNIFPEQGGGRRLF  165 (189)
Q Consensus       141 ~~~~~~-~~~~~~~~l~~~~~g~~~~  165 (189)
                      ...... ....+.+++++  ||..++
T Consensus       119 ~~~~~~~~l~~~~~~L~p--gG~l~~  142 (243)
T 3bkw_A          119 YVEDVARLFRTVHQALSP--GGHFVF  142 (243)
T ss_dssp             GCSCHHHHHHHHHHHEEE--EEEEEE
T ss_pred             ccchHHHHHHHHHHhcCc--CcEEEE
Confidence            543222 22345556644  355333

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.24  E-value=9.4e-11  Score=90.47  Aligned_cols=91  Identities=16%  Similarity=0.056  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCC-eEEEEeC-CHHHHHHHHHHH-----HHhCCC----CceEEE
Q psy13204         51 EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDI-DPAKLRLAQHNA-----SVYGVS----HKIQFI  117 (189)
Q Consensus        51 ~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~-~~~~~~~a~~~~-----~~~~~~----~~~~~~  117 (189)
                      +.+.+.+....  ..+.+|||+|||+|.+++.+++.+. +|+|+|+ ++.+++.|++|+     ..+++.    .++++.
T Consensus        65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~  144 (281)
T 3bzb_A           65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV  144 (281)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred             HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence            44566665543  3478999999999999999999876 8999999 899999999999     555552    367888


Q ss_pred             eCCcccCC-------CCCCccEEEE-CCCCCC
Q psy13204        118 QGDFFALA-------PSLQGDVVFL-SPPWGG  141 (189)
Q Consensus       118 ~~d~~~~~-------~~~~~D~v~~-npp~~~  141 (189)
                      ..|..+..       +..+||+|++ |.+|+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~  176 (281)
T 3bzb_A          145 PYRWGDSPDSLQRCTGLQRFQVVLLADLLSFH  176 (281)
T ss_dssp             ECCTTSCTHHHHHHHSCSSBSEEEEESCCSCG
T ss_pred             EecCCCccHHHHhhccCCCCCEEEEeCcccCh
Confidence            66654421       2468999987 877764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.24  E-value=5.1e-11  Score=89.18  Aligned_cols=74  Identities=16%  Similarity=0.092  Sum_probs=62.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc----CCCCCCccEEEEC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA----LAPSLQGDVVFLS  136 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~~n  136 (189)
                      ++.+|||+|||+|.++..+++. + .+|+|+|+++.+++.|++++...   .++.++++|+.+    ......||+|+.+
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTSCCEEEEEEC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccCccEEEEEEe
Confidence            4789999999999999999988 3 78999999999999999887544   489999999987    4433689999987


Q ss_pred             CCC
Q psy13204        137 PPW  139 (189)
Q Consensus       137 pp~  139 (189)
                      +|.
T Consensus       151 ~~~  153 (230)
T 1fbn_A          151 VAQ  153 (230)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.23  E-value=3e-11  Score=90.65  Aligned_cols=76  Identities=21%  Similarity=0.223  Sum_probs=66.4

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CC--CCccE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PS--LQGDV  132 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~~D~  132 (189)
                      ++.+|||+|||+|..+..+++.   +.+++++|+++.+++.|++++...++.++++++++|+.+..     ..  .+||+
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~  151 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL  151 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence            3789999999999999999986   56999999999999999999998888667999999986643     12  68999


Q ss_pred             EEECCC
Q psy13204        133 VFLSPP  138 (189)
Q Consensus       133 v~~npp  138 (189)
                      |++|.+
T Consensus       152 V~~d~~  157 (232)
T 3cbg_A          152 IFIDAD  157 (232)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999976

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.23  E-value=6.6e-11  Score=88.66  Aligned_cols=74  Identities=15%  Similarity=0.006  Sum_probs=63.1

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVF  134 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~  134 (189)
                      +++.+|||+|||+|.++..+++.   +.+|+|+|+++.+++.+.++++.+   .+++++++|+.+..    ...+||+|+
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D~V~  152 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVDVIF  152 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEEEEE
Confidence            34789999999999999999987   378999999999988888887765   47899999998732    346899999


Q ss_pred             ECCC
Q psy13204        135 LSPP  138 (189)
Q Consensus       135 ~npp  138 (189)
                      +|+|
T Consensus       153 ~~~~  156 (233)
T 2ipx_A          153 ADVA  156 (233)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            9998

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.23  E-value=6e-11  Score=89.72  Aligned_cols=76  Identities=16%  Similarity=0.276  Sum_probs=63.8

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHh--------CCCCceEEEeCCcccCC----C
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVY--------GVSHKIQFIQGDFFALA----P  126 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~~~~~~~d~~~~~----~  126 (189)
                      ++++.+|||+|||+|.+++.+++.+  .+++|+|+++.+++.|++++..+        ++ .+++++++|+.+.+    +
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~  125 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFE  125 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcc
Confidence            3457899999999999999999884  57999999999999999998876        66 58999999998743    3


Q ss_pred             CCCccEEEECC
Q psy13204        127 SLQGDVVFLSP  137 (189)
Q Consensus       127 ~~~~D~v~~np  137 (189)
                      ...+|.|+++.
T Consensus       126 ~~~~d~v~~~~  136 (246)
T 2vdv_E          126 KGQLSKMFFCF  136 (246)
T ss_dssp             TTCEEEEEEES
T ss_pred             ccccCEEEEEC
Confidence            56788887653

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=7.4e-12  Score=96.27  Aligned_cols=89  Identities=19%  Similarity=0.188  Sum_probs=70.9

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++.      .++++.++|+.+.....+||+|+++..++.
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  129 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDKPLDAVFSNAMLHW  129 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSSCEEEEEEESCGGG
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCCCcCEEEEcchhhh
Confidence            34789999999999999999998899999999999999998775      378999999988765578999999887776


Q ss_pred             Ccccc-ccccccccCc
Q psy13204        142 PEYAR-SSFSIDNIFP  156 (189)
Q Consensus       142 ~~~~~-~~~~~~~~l~  156 (189)
                      ..... ....+.++++
T Consensus       130 ~~d~~~~l~~~~~~Lk  145 (279)
T 3ccf_A          130 VKEPEAAIASIHQALK  145 (279)
T ss_dssp             CSCHHHHHHHHHHHEE
T ss_pred             CcCHHHHHHHHHHhcC
Confidence            43222 2233444553

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.21  E-value=7.5e-12  Score=92.77  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=71.5

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC-----CCCCCccEEEECC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----APSLQGDVVFLSP  137 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~np  137 (189)
                      .+.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++       .++.+.++|+.+.     ....+||+|+++.
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~  124 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLICANF  124 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEEEECc
Confidence            378999999999999999999999999999999999999877       2677888888776     2445699999998


Q ss_pred             CCCCCccccccccccccCcCCCCchhHH
Q psy13204        138 PWGGPEYARSSFSIDNIFPEQGGGRRLF  165 (189)
Q Consensus       138 p~~~~~~~~~~~~~~~~l~~~~~g~~~~  165 (189)
                      +++..+.......+.+++++  ||..++
T Consensus       125 ~l~~~~~~~~l~~~~~~L~p--gG~l~~  150 (227)
T 3e8s_A          125 ALLHQDIIELLSAMRTLLVP--GGALVI  150 (227)
T ss_dssp             CCCSSCCHHHHHHHHHTEEE--EEEEEE
T ss_pred             hhhhhhHHHHHHHHHHHhCC--CeEEEE
Confidence            88832222233445566644  355443

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.21  E-value=1e-11  Score=94.45  Aligned_cols=87  Identities=17%  Similarity=0.070  Sum_probs=67.2

Q ss_pred             HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCe--EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204         52 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQK--VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P  126 (189)
Q Consensus        52 ~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~  126 (189)
                      .+.+.+++.+  .++.+|||+|||+|.++. +++ +.+  |+++|+++.+++.++++....   .+++++++|+.+.. +
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~   82 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHH
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHH
Confidence            3455555544  347899999999999999 654 677  999999999999998876432   47999999999875 1


Q ss_pred             C-----CCccEEEECCCCCCCc
Q psy13204        127 S-----LQGDVVFLSPPWGGPE  143 (189)
Q Consensus       127 ~-----~~~D~v~~npp~~~~~  143 (189)
                      .     ...+.|++|+||...+
T Consensus        83 ~~~~~~~~~~~vvsNlPY~i~~  104 (252)
T 1qyr_A           83 ELAEKMGQPLRVFGNLPYNIST  104 (252)
T ss_dssp             HHHHHHTSCEEEEEECCTTTHH
T ss_pred             HhhcccCCceEEEECCCCCccH
Confidence            1     2357999999998643

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.21  E-value=2.3e-11  Score=92.73  Aligned_cols=84  Identities=18%  Similarity=0.145  Sum_probs=69.5

Q ss_pred             HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204         52 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL  128 (189)
Q Consensus        52 ~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~  128 (189)
                      .+.+.+...+  .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++.+.       +++++++|+.+.. +..
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~   93 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPDK   93 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCTT
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCCC
Confidence            4566666665  45889999999999999999999999999999999998775443       7899999998865 567


Q ss_pred             CccEEEECCCCCCC
Q psy13204        129 QGDVVFLSPPWGGP  142 (189)
Q Consensus       129 ~~D~v~~npp~~~~  142 (189)
                      +||+|++...++..
T Consensus        94 ~fD~v~~~~~l~~~  107 (261)
T 3ege_A           94 SVDGVISILAIHHF  107 (261)
T ss_dssp             CBSEEEEESCGGGC
T ss_pred             CEeEEEEcchHhhc
Confidence            89999998776654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.20  E-value=5.5e-11  Score=92.20  Aligned_cols=76  Identities=22%  Similarity=0.317  Sum_probs=61.7

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCC------------------------------
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS------------------------------  111 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~------------------------------  111 (189)
                      +.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.|++++...+..                              
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF  126 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence            789999999999999999988  679999999999999999887654321                              


Q ss_pred             ---------------------------CceEEEeCCcccCC------CCCCccEEEECCCC
Q psy13204        112 ---------------------------HKIQFIQGDFFALA------PSLQGDVVFLSPPW  139 (189)
Q Consensus       112 ---------------------------~~~~~~~~d~~~~~------~~~~~D~v~~npp~  139 (189)
                                                 .+++++++|+....      ....||+|++....
T Consensus       127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl  187 (292)
T 3g07_A          127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLT  187 (292)
T ss_dssp             ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCH
T ss_pred             cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHH
Confidence                                       47999999988654      45789999996654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.20  E-value=1.7e-11  Score=98.59  Aligned_cols=95  Identities=21%  Similarity=0.273  Sum_probs=73.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh-----C-CC-CceEEEeCCcccC------C-
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVY-----G-VS-HKIQFIQGDFFAL------A-  125 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~-----~-~~-~~~~~~~~d~~~~------~-  125 (189)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+++.+++.|++++...     | .. .+++++++|+.+.      . 
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            4789999999999999999875   559999999999999999988755     3 21 4899999999875      3 


Q ss_pred             CCCCccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204        126 PSLQGDVVFLSPPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       126 ~~~~~D~v~~npp~~~~~~~~-~~~~~~~~l~~  157 (189)
                      +..+||+|+++..++...... ....+.++|++
T Consensus       163 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkp  195 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRD  195 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE
T ss_pred             CCCCEEEEEEccchhcCCCHHHHHHHHHHHcCC
Confidence            567899999998887643322 22344555533

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.20  E-value=1.1e-10  Score=89.93  Aligned_cols=80  Identities=16%  Similarity=0.121  Sum_probs=66.7

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh--CC-CCceEEEeCCcccCC--CCCCccEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALA--PSLQGDVVF  134 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~--~~~~~D~v~  134 (189)
                      +.+.+|||+|||+|..+.++++.  ..+|+++|+++.+++.|++++...  ++ ..+++++++|+.+..  ...+||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            44789999999999999999887  468999999999999999987542  33 247999999988764  346899999


Q ss_pred             ECCCCCC
Q psy13204        135 LSPPWGG  141 (189)
Q Consensus       135 ~npp~~~  141 (189)
                      +|+|...
T Consensus       154 ~d~~~~~  160 (275)
T 1iy9_A          154 VDSTEPV  160 (275)
T ss_dssp             ESCSSCC
T ss_pred             ECCCCCC
Confidence            9998743

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.20  E-value=1.5e-10  Score=85.66  Aligned_cols=74  Identities=8%  Similarity=0.025  Sum_probs=59.4

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC----CCCCCccEEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL----APSLQGDVVFL  135 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~  135 (189)
                      +++.+|||+|||+|..+..+++..  .+|+|+|+|+.+++.+.+.++..   .++.++++|+.+.    ....+||+|++
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V~~  132 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIYQ  132 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeEEEE
Confidence            458899999999999999998874  78999999999987766665543   3788899998763    22368999999


Q ss_pred             CCC
Q psy13204        136 SPP  138 (189)
Q Consensus       136 npp  138 (189)
                      |.+
T Consensus       133 ~~~  135 (210)
T 1nt2_A          133 DIA  135 (210)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            853

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.20  E-value=6.2e-11  Score=88.47  Aligned_cols=99  Identities=17%  Similarity=0.199  Sum_probs=75.3

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-C-------CeEEEEeCCHHHHHHHHHHHHHhC-----CCCceEEEeCCcccCCCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-C-------QKVISIDIDPAKLRLAQHNASVYG-----VSHKIQFIQGDFFALAPS  127 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~-------~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~~~d~~~~~~~  127 (189)
                      ++++.+|||+|||+|.++..+++. +       .+|+++|+++.+++.|++++...+     . .+++++++|..+..+.
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~  160 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYPP  160 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCC-CceEEEECCcccCCCc
Confidence            344789999999999999999885 4       489999999999999999987765     3 4799999999875443


Q ss_pred             -CCccEEEECCCCCCCccccccccccccCcCCCCchhHHHH
Q psy13204        128 -LQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQV  167 (189)
Q Consensus       128 -~~~D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~~~~~~  167 (189)
                       ..||+|+++.+.+...     ..+.+.|++  ||..++.+
T Consensus       161 ~~~fD~I~~~~~~~~~~-----~~~~~~Lkp--gG~lvi~~  194 (227)
T 1r18_A          161 NAPYNAIHVGAAAPDTP-----TELINQLAS--GGRLIVPV  194 (227)
T ss_dssp             GCSEEEEEECSCBSSCC-----HHHHHTEEE--EEEEEEEE
T ss_pred             CCCccEEEECCchHHHH-----HHHHHHhcC--CCEEEEEE
Confidence             6899999998876521     234445533  35544433

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.19  E-value=7.3e-11  Score=88.85  Aligned_cols=76  Identities=17%  Similarity=0.210  Sum_probs=62.9

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHH------hCCCCceEEEeCCcccC----CCCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV------YGVSHKIQFIQGDFFAL----APSLQ  129 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~------~~~~~~~~~~~~d~~~~----~~~~~  129 (189)
                      ..+..|||+|||+|.++..+++.  +..++|+|+++.+++.|++++..      .+. .++.++++|+.+.    .+..+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTC
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcC
Confidence            34678999999999999999987  56899999999999999988764      344 5899999999873    24678


Q ss_pred             ccEEEECCC
Q psy13204        130 GDVVFLSPP  138 (189)
Q Consensus       130 ~D~v~~npp  138 (189)
                      +|.|+++.|
T Consensus       124 ~D~v~~~~~  132 (235)
T 3ckk_A          124 LTKMFFLFP  132 (235)
T ss_dssp             EEEEEEESC
T ss_pred             eeEEEEeCC
Confidence            999988744

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.19  E-value=3.1e-11  Score=103.69  Aligned_cols=93  Identities=17%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             ChHHHHHHHHHh----CC----CCCEEEEecCCCChHHHHHHHhC-----CeEEEEeCCHHHHHHH--HHHHHHhCCC--
Q psy13204         49 TPEKVAQHIASR----CK----ASDVVIDGFCGCGGNTIQFAAVC-----QKVISIDIDPAKLRLA--QHNASVYGVS--  111 (189)
Q Consensus        49 ~~~~~~~~~~~~----~~----~~~~vlD~g~G~G~~~~~~~~~~-----~~v~~vD~~~~~~~~a--~~~~~~~~~~--  111 (189)
                      ||..++..++..    .+    .+.+|+|+|||+|.+.+.+++..     .+++|+|+++.+++.|  +.|+..+++.  
T Consensus       299 TP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG  378 (878)
T 3s1s_A          299 TDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS  378 (878)
T ss_dssp             CCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT
T ss_pred             CCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC
Confidence            566777777665    22    37799999999999999998763     3699999999999999  6665542221  


Q ss_pred             -CceEEEeCCcccCC--CCCCccEEEECCCCCC
Q psy13204        112 -HKIQFIQGDFFALA--PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       112 -~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~  141 (189)
                       ....+...|+.+..  ....||+|++||||..
T Consensus       379 i~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~  411 (878)
T 3s1s_A          379 NNAPTITGEDVCSLNPEDFANVSVVVMNPPYVS  411 (878)
T ss_dssp             TBCCEEECCCGGGCCGGGGTTEEEEEECCBCCS
T ss_pred             CCcceEEecchhcccccccCCCCEEEECCCccc
Confidence             23466677776632  3468999999999975

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.19  E-value=9.2e-11  Score=87.73  Aligned_cols=79  Identities=18%  Similarity=0.259  Sum_probs=66.4

Q ss_pred             HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCc
Q psy13204         51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG  130 (189)
Q Consensus        51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  130 (189)
                      +.+.+.+.....++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++.      .+++++++|+.+.....+|
T Consensus        28 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~  101 (239)
T 3bxo_A           28 SDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGRKF  101 (239)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSSCE
T ss_pred             HHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCCCC
Confidence            3455556665666889999999999999999998889999999999999998774      3689999999887655689


Q ss_pred             cEEEE
Q psy13204        131 DVVFL  135 (189)
Q Consensus       131 D~v~~  135 (189)
                      |+|++
T Consensus       102 D~v~~  106 (239)
T 3bxo_A          102 SAVVS  106 (239)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99995

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.19  E-value=2.8e-11  Score=90.54  Aligned_cols=80  Identities=23%  Similarity=0.212  Sum_probs=64.5

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCC-HHHHHHH---HHHHHHhCCCCceEEEeCCcccCCC--CCCccE
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDID-PAKLRLA---QHNASVYGVSHKIQFIQGDFFALAP--SLQGDV  132 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~-~~~~~~a---~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~  132 (189)
                      .+++.+|||+|||+|.++..+++.  +.+|+|+|+| +.+++.|   ++++...++ .++.++++|+.+.+.  ...+|.
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~~~~d~v~~  100 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPFELKNIADS  100 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCGGGTTCEEE
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhhhccCeEEE
Confidence            355889999999999999999854  7789999999 6666665   777777777 489999999988742  256888


Q ss_pred             EEECCCCCC
Q psy13204        133 VFLSPPWGG  141 (189)
Q Consensus       133 v~~npp~~~  141 (189)
                      +++++|+..
T Consensus       101 i~~~~~~~~  109 (225)
T 3p2e_A          101 ISILFPWGT  109 (225)
T ss_dssp             EEEESCCHH
T ss_pred             EEEeCCCcH
Confidence            999988754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.19  E-value=8.1e-11  Score=91.54  Aligned_cols=79  Identities=14%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHH--hCC-CCceEEEeCCcccCC--CCCCccEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV--YGV-SHKIQFIQGDFFALA--PSLQGDVVF  134 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~~~~~~~d~~~~~--~~~~~D~v~  134 (189)
                      +.+.+|||+|||+|..+..+++.  ..+|+++|+++.+++.|++++..  .++ ..+++++++|+.+..  ...+||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            44789999999999999999987  46899999999999999998754  222 247999999987754  346799999


Q ss_pred             ECCCCC
Q psy13204        135 LSPPWG  140 (189)
Q Consensus       135 ~npp~~  140 (189)
                      +|+|..
T Consensus       169 ~d~~~~  174 (296)
T 1inl_A          169 IDSTDP  174 (296)
T ss_dssp             EEC---
T ss_pred             EcCCCc
Confidence            998764

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.18  E-value=1.1e-10  Score=87.88  Aligned_cols=76  Identities=18%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-------------
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-------------  126 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------------  126 (189)
                      ++.+|||+|||+|..+..+++.   +.+++++|+++.+++.|++++...++.++++++++|+.+..+             
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  139 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS  139 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence            4889999999999999999987   579999999999999999999988885569999999876421             


Q ss_pred             ----C-CCccEEEECCC
Q psy13204        127 ----S-LQGDVVFLSPP  138 (189)
Q Consensus       127 ----~-~~~D~v~~npp  138 (189)
                          . ..||+|+++..
T Consensus       140 ~f~~~~~~fD~I~~~~~  156 (239)
T 2hnk_A          140 DFAFGPSSIDLFFLDAD  156 (239)
T ss_dssp             TTCCSTTCEEEEEECSC
T ss_pred             cccCCCCCcCEEEEeCC
Confidence                2 68999999854

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.18  E-value=1.2e-11  Score=88.14  Aligned_cols=75  Identities=16%  Similarity=0.234  Sum_probs=63.9

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ..++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++     . .++++.++| .. .+..+||+|+++..++
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~-~~v~~~~~d-~~-~~~~~~D~v~~~~~l~   86 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----F-DSVITLSDP-KE-IPDNSVDFILFANSFH   86 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----C-TTSEEESSG-GG-SCTTCEEEEEEESCST
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----C-CCcEEEeCC-CC-CCCCceEEEEEccchh
Confidence            45578999999999999999999877999999999999999888     2 488999999 33 2567899999988887


Q ss_pred             CCc
Q psy13204        141 GPE  143 (189)
Q Consensus       141 ~~~  143 (189)
                      ...
T Consensus        87 ~~~   89 (170)
T 3i9f_A           87 DMD   89 (170)
T ss_dssp             TCS
T ss_pred             ccc
Confidence            653

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.18  E-value=2e-10  Score=90.69  Aligned_cols=81  Identities=23%  Similarity=0.300  Sum_probs=65.2

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHHhC----------CCCceEEEeCCcccCC--
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYG----------VSHKIQFIQGDFFALA--  125 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~----------~~~~~~~~~~d~~~~~--  125 (189)
                      +.++.+|||+|||+|.++..+++. +  .+|+++|+++.+++.|++++...+          ...+++++++|+.+..  
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            345889999999999999999987 4  789999999999999999987532          2247999999998863  


Q ss_pred             -CCCCccEEEECCCCCC
Q psy13204        126 -PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 -~~~~~D~v~~npp~~~  141 (189)
                       +...||+|++|+|...
T Consensus       183 ~~~~~fD~V~~~~~~~~  199 (336)
T 2b25_A          183 IKSLTFDAVALDMLNPH  199 (336)
T ss_dssp             -----EEEEEECSSSTT
T ss_pred             cCCCCeeEEEECCCCHH
Confidence             3457999999987543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.17  E-value=9e-11  Score=92.72  Aligned_cols=78  Identities=17%  Similarity=0.135  Sum_probs=65.4

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh--CC-CCceEEEeCCcccCC---CCCCccEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALA---PSLQGDVV  133 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~---~~~~~D~v  133 (189)
                      +.+.+|||+|||+|..+..+++.  ..+|+++|+++.+++.|++++...  ++ ..+++++++|+.+..   +..+||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            44789999999999999999987  578999999999999999998653  33 247999999988763   34689999


Q ss_pred             EECCCC
Q psy13204        134 FLSPPW  139 (189)
Q Consensus       134 ~~npp~  139 (189)
                      ++|++-
T Consensus       199 i~d~~~  204 (334)
T 1xj5_A          199 IVDSSD  204 (334)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999863

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.17  E-value=6.7e-11  Score=93.03  Aligned_cols=78  Identities=14%  Similarity=0.154  Sum_probs=65.1

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHH--hCC-CCceEEEeCCcccCC--CCCCccEE
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV--YGV-SHKIQFIQGDFFALA--PSLQGDVV  133 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~~~~~~~d~~~~~--~~~~~D~v  133 (189)
                      .+.+.+|||+|||+|..+..+++.  +.+++++|+++.+++.|++++..  .++ ..+++++++|+.+..  ...+||+|
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI  193 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI  193 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence            345789999999999999999887  57899999999999999998765  222 247999999987754  34689999


Q ss_pred             EECCC
Q psy13204        134 FLSPP  138 (189)
Q Consensus       134 ~~npp  138 (189)
                      ++|++
T Consensus       194 i~d~~  198 (321)
T 2pt6_A          194 IVDSS  198 (321)
T ss_dssp             EEECC
T ss_pred             EECCc
Confidence            99984

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.17  E-value=8.3e-11  Score=91.82  Aligned_cols=79  Identities=19%  Similarity=0.161  Sum_probs=65.2

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHH--hCC-CCceEEEeCCcccCC--CCCCccEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV--YGV-SHKIQFIQGDFFALA--PSLQGDVVF  134 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~~~~~~~d~~~~~--~~~~~D~v~  134 (189)
                      ..+.+|||+|||+|..+..+++.  ..+++++|+++.+++.|++++..  .++ ..+++++++|+.+..  ...+||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            44789999999999999999987  36899999999999999998765  233 257999999998754  346899999


Q ss_pred             ECCCCC
Q psy13204        135 LSPPWG  140 (189)
Q Consensus       135 ~npp~~  140 (189)
                      +|+|..
T Consensus       174 ~d~~~~  179 (304)
T 2o07_A          174 TDSSDP  179 (304)
T ss_dssp             EECC--
T ss_pred             ECCCCC
Confidence            999875

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.17  E-value=1.8e-10  Score=99.30  Aligned_cols=80  Identities=20%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHh------CCCCceEEEeCCcccCC-CCCCccE
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVY------GVSHKIQFIQGDFFALA-PSLQGDV  132 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~-~~~~~D~  132 (189)
                      ++.+|||+|||+|.++..+++.+   .+|+|+|+++.+++.|++++...      +. .+++++++|+.+.. +...||+
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCSCCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCCeeE
Confidence            48899999999999999999987   79999999999999999876543      44 48999999999876 4578999


Q ss_pred             EEECCCCCCCc
Q psy13204        133 VFLSPPWGGPE  143 (189)
Q Consensus       133 v~~npp~~~~~  143 (189)
                      |++.-.+++..
T Consensus       800 VV~~eVLeHL~  810 (950)
T 3htx_A          800 GTCLEVIEHME  810 (950)
T ss_dssp             EEEESCGGGSC
T ss_pred             EEEeCchhhCC
Confidence            99976666544

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.16  E-value=9.8e-11  Score=90.42  Aligned_cols=79  Identities=19%  Similarity=0.190  Sum_probs=65.2

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHh--CC--------CCceEEEeCCcccCCC-CC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY--GV--------SHKIQFIQGDFFALAP-SL  128 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~--~~--------~~~~~~~~~d~~~~~~-~~  128 (189)
                      .+.+.+|||+|||+|..+..+++. ..+++++|+++.+++.|++++ ..  ++        ..+++++++|+.+..+ ..
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~  151 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  151 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccC
Confidence            345789999999999999999887 458999999999999999987 32  22        2579999999876542 46


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      +||+|++|+|..
T Consensus       152 ~fD~Ii~d~~~~  163 (281)
T 1mjf_A          152 GFDVIIADSTDP  163 (281)
T ss_dssp             CEEEEEEECCCC
T ss_pred             CeeEEEECCCCC
Confidence            799999999864

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.15  E-value=3.4e-11  Score=90.98  Aligned_cols=77  Identities=13%  Similarity=0.008  Sum_probs=65.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~  140 (189)
                      ++.+|||+|||+|.++..+++. ..+++++|+++.+++.|+++....   .+++++++|+.+.. +..+||+|++...++
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  169 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCCeEEEEEcchhh
Confidence            3789999999999999999887 457999999999999999887543   47899999998865 556899999977766


Q ss_pred             CC
Q psy13204        141 GP  142 (189)
Q Consensus       141 ~~  142 (189)
                      ..
T Consensus       170 ~~  171 (254)
T 1xtp_A          170 YL  171 (254)
T ss_dssp             GS
T ss_pred             hC
Confidence            54

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.15  E-value=6.6e-10  Score=83.34  Aligned_cols=86  Identities=16%  Similarity=0.069  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhCC-----CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcc
Q psy13204         51 EKVAQHIASRCK-----ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF  122 (189)
Q Consensus        51 ~~~~~~~~~~~~-----~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  122 (189)
                      ..+...++..+.     ++.+|||+|||+|.++..+++.   ..+|+|+|+++.+++.+.+.+...   .++.++++|+.
T Consensus        59 skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~  135 (232)
T 3id6_C           59 SKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADAR  135 (232)
T ss_dssp             CHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTT
T ss_pred             HHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccc
Confidence            345555555443     5899999999999999999886   459999999999986655544432   48999999987


Q ss_pred             cCC----CCCCccEEEECCCC
Q psy13204        123 ALA----PSLQGDVVFLSPPW  139 (189)
Q Consensus       123 ~~~----~~~~~D~v~~npp~  139 (189)
                      ...    ....||+|++|.+.
T Consensus       136 ~~~~~~~~~~~~D~I~~d~a~  156 (232)
T 3id6_C          136 FPQSYKSVVENVDVLYVDIAQ  156 (232)
T ss_dssp             CGGGTTTTCCCEEEEEECCCC
T ss_pred             cchhhhccccceEEEEecCCC
Confidence            642    23579999999775

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.14  E-value=1.1e-10  Score=87.76  Aligned_cols=78  Identities=17%  Similarity=0.112  Sum_probs=65.6

Q ss_pred             CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~  141 (189)
                      +.+|||+|||+|.++..+++. ..+++|+|+++.+++.|+++....+. .+++++++|+.+.. +..+||+|+++-.++.
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC-ceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence            789999999999999998887 45899999999999999999876643 47899999988876 4458999999866554


Q ss_pred             C
Q psy13204        142 P  142 (189)
Q Consensus       142 ~  142 (189)
                      .
T Consensus       159 ~  159 (241)
T 2ex4_A          159 L  159 (241)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.14  E-value=1.2e-10  Score=91.22  Aligned_cols=79  Identities=20%  Similarity=0.159  Sum_probs=65.7

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh--CC-CCceEEEeCCcccCC--CCCCccEE
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALA--PSLQGDVV  133 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~--~~~~~D~v  133 (189)
                      .+.+.+|||+|||+|..+..+++.  ..+++++|+++.+++.|++++...  ++ ..+++++++|+.+..  ...+||+|
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  185 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  185 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence            445789999999999999999887  578999999999999999987643  32 247999999998764  45689999


Q ss_pred             EECCCC
Q psy13204        134 FLSPPW  139 (189)
Q Consensus       134 ~~npp~  139 (189)
                      ++|++.
T Consensus       186 i~d~~~  191 (314)
T 2b2c_A          186 ITDSSD  191 (314)
T ss_dssp             EECCC-
T ss_pred             EEcCCC
Confidence            999864

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.14  E-value=4.3e-10  Score=85.52  Aligned_cols=80  Identities=18%  Similarity=0.143  Sum_probs=65.6

Q ss_pred             HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCc
Q psy13204         52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG  130 (189)
Q Consensus        52 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  130 (189)
                      .+.+.+...++++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++..      . .++++|+.+.. +..+|
T Consensus        43 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~------~-~~~~~d~~~~~~~~~~f  115 (260)
T 2avn_A           43 LIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV------K-NVVEAKAEDLPFPSGAF  115 (260)
T ss_dssp             HHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC------S-CEEECCTTSCCSCTTCE
T ss_pred             HHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC------C-CEEECcHHHCCCCCCCE
Confidence            3455565666668899999999999999999999999999999999999987753      1 28889988765 55789


Q ss_pred             cEEEECCC
Q psy13204        131 DVVFLSPP  138 (189)
Q Consensus       131 D~v~~npp  138 (189)
                      |+|++..+
T Consensus       116 D~v~~~~~  123 (260)
T 2avn_A          116 EAVLALGD  123 (260)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEcch
Confidence            99999654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.13  E-value=4e-10  Score=88.03  Aligned_cols=81  Identities=20%  Similarity=0.206  Sum_probs=65.6

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhC------CCCceEEEeCCcccCC-------CC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYG------VSHKIQFIQGDFFALA-------PS  127 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~-------~~  127 (189)
                      +++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|+++....+      ...+++++++|+.+..       +.
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            45789999999999999999876 6789999999999999999886542      1247899999998763       23


Q ss_pred             CCccEEEECCCCCCC
Q psy13204        128 LQGDVVFLSPPWGGP  142 (189)
Q Consensus       128 ~~~D~v~~npp~~~~  142 (189)
                      .+||+|+++-..++.
T Consensus       113 ~~fD~V~~~~~l~~~  127 (313)
T 3bgv_A          113 MCFDICSCQFVCHYS  127 (313)
T ss_dssp             CCEEEEEEETCGGGG
T ss_pred             CCEEEEEEecchhhc
Confidence            489999998777664

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.13  E-value=3.1e-10  Score=86.61  Aligned_cols=89  Identities=17%  Similarity=0.241  Sum_probs=69.8

Q ss_pred             cccccChHHHHHHHHHhC-CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCC
Q psy13204         44 SWYSVTPEKVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD  120 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d  120 (189)
                      ++|....+.+.+.+...+ .++.+|||+|||+|.++..+++.  +.+++|+|+++.+++.|+++.      .++.+..+|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d  138 (269)
T 1p91_A           65 GHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVAS  138 (269)
T ss_dssp             TTTHHHHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECC
T ss_pred             CCcHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcc
Confidence            444443445555555555 45889999999999999999987  789999999999999998764      367899999


Q ss_pred             cccCC-CCCCccEEEECCC
Q psy13204        121 FFALA-PSLQGDVVFLSPP  138 (189)
Q Consensus       121 ~~~~~-~~~~~D~v~~npp  138 (189)
                      +.+.. +..+||+|+++.+
T Consensus       139 ~~~~~~~~~~fD~v~~~~~  157 (269)
T 1p91_A          139 SHRLPFSDTSMDAIIRIYA  157 (269)
T ss_dssp             TTSCSBCTTCEEEEEEESC
T ss_pred             hhhCCCCCCceeEEEEeCC
Confidence            88765 5568999998644

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.12  E-value=3e-10  Score=89.05  Aligned_cols=81  Identities=17%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHH--hC-C-CCceEEEeCCcccCC--CCCCccE
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV--YG-V-SHKIQFIQGDFFALA--PSLQGDV  132 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~--~~-~-~~~~~~~~~d~~~~~--~~~~~D~  132 (189)
                      .+.+.+|||+|||+|..+..+++.  +.+++++|+++.+++.|++++..  .+ + ..+++++++|+.+..  ...+||+
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence            345789999999999999999887  56899999999999999998764  22 2 247999999998754  4568999


Q ss_pred             EEECCCCCC
Q psy13204        133 VFLSPPWGG  141 (189)
Q Consensus       133 v~~npp~~~  141 (189)
                      |++|++...
T Consensus       155 Ii~d~~~~~  163 (314)
T 1uir_A          155 VIIDLTDPV  163 (314)
T ss_dssp             EEEECCCCB
T ss_pred             EEECCCCcc
Confidence            999988754

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.12  E-value=2.2e-10  Score=89.43  Aligned_cols=80  Identities=18%  Similarity=0.115  Sum_probs=64.4

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHH---hCCCCceEEEeCCcccCC---CCCCccEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV---YGVSHKIQFIQGDFFALA---PSLQGDVV  133 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~~~~~~~d~~~~~---~~~~~D~v  133 (189)
                      +.+.+|||+|||+|..+..+++.  ..+++++|+++.+++.|++++..   .....+++++++|+.+..   +..+||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            45789999999999999999987  56899999999999999998742   111247999999998765   35689999


Q ss_pred             EECCCCCC
Q psy13204        134 FLSPPWGG  141 (189)
Q Consensus       134 ~~npp~~~  141 (189)
                      ++|++...
T Consensus       174 i~d~~~~~  181 (304)
T 3bwc_A          174 IIDTTDPA  181 (304)
T ss_dssp             EEECC---
T ss_pred             EECCCCcc
Confidence            99987653

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.11  E-value=2.5e-10  Score=86.34  Aligned_cols=85  Identities=14%  Similarity=0.131  Sum_probs=71.8

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCc
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG  130 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  130 (189)
                      +...+...+....+|||+|||.|-+++.++..  ..+++++|+|+.+++.++.|+..+|+  +.++.+.|.....+...+
T Consensus       122 fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~p~~~~  199 (281)
T 3lcv_B          122 FYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDRLDEPA  199 (281)
T ss_dssp             HHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSCCCSCC
T ss_pred             HHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccCCCCCc
Confidence            44445555666889999999999999999776  56899999999999999999999998  589999998887777899


Q ss_pred             cEEEECCCC
Q psy13204        131 DVVFLSPPW  139 (189)
Q Consensus       131 D~v~~npp~  139 (189)
                      |+++++-..
T Consensus       200 DvaL~lkti  208 (281)
T 3lcv_B          200 DVTLLLKTL  208 (281)
T ss_dssp             SEEEETTCH
T ss_pred             chHHHHHHH
Confidence            999985333

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.11  E-value=6.3e-10  Score=83.32  Aligned_cols=72  Identities=18%  Similarity=0.176  Sum_probs=64.7

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEEC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  136 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~n  136 (189)
                      ..+.+|||+|||.|.+++.+. .+.+++|+|+++.+++.+++++..++.  +..+.++|.....+...+|+++++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPAEAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCCCBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCCCCcchHHHH
Confidence            458899999999999999988 677999999999999999999988885  889999999887766799999984

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.07  E-value=7.6e-10  Score=88.50  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=73.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      .+.+|+|+|||+|.++..+++.  +.+++++|+ +.+++.|++++...++.++++++.+|+.+..+. .||+|++.-..+
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~-~~D~v~~~~vlh  279 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPD-GADVYLIKHVLH  279 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCS-SCSEEEEESCGG
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCC-CceEEEhhhhhc
Confidence            3789999999999999999987  568999999 999999999999888877899999999854454 899999976665


Q ss_pred             CCcccc---ccccccccCcC
Q psy13204        141 GPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       141 ~~~~~~---~~~~~~~~l~~  157 (189)
                      ......   ....+.+.+++
T Consensus       280 ~~~d~~~~~~L~~~~~~L~p  299 (369)
T 3gwz_A          280 DWDDDDVVRILRRIATAMKP  299 (369)
T ss_dssp             GSCHHHHHHHHHHHHTTCCT
T ss_pred             cCCHHHHHHHHHHHHHHcCC
Confidence            433322   23345555543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.06  E-value=7.9e-10  Score=80.58  Aligned_cols=70  Identities=24%  Similarity=0.277  Sum_probs=57.0

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---------C---CC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------P---SL  128 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~---~~  128 (189)
                      ++++.+|||+|||+|.++..+++.+.+|+|+|+++..           .. .+++++++|+.+..         .   ..
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEGIE   90 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence            4568999999999999999999999999999999741           22 47899999988753         0   03


Q ss_pred             CccEEEECCCCCCC
Q psy13204        129 QGDVVFLSPPWGGP  142 (189)
Q Consensus       129 ~~D~v~~npp~~~~  142 (189)
                      +||+|++|++....
T Consensus        91 ~~D~Vlsd~~~~~~  104 (191)
T 3dou_A           91 KVDDVVSDAMAKVS  104 (191)
T ss_dssp             SEEEEEECCCCCCC
T ss_pred             cceEEecCCCcCCC
Confidence            89999999876543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.06  E-value=3.9e-10  Score=88.15  Aligned_cols=74  Identities=16%  Similarity=0.115  Sum_probs=62.9

Q ss_pred             EEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCCCC
Q psy13204         66 VVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPPWG  140 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp~~  140 (189)
                      +|||+|||+|.++.++++.  +.+++++|+++.+++.|++++....- .+++++++|+.++.   +..+||+|++|.+..
T Consensus        92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~-~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRA-PRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCT-TTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCC-CceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            9999999999999999984  67999999999999999998754332 47999999998865   356899999996544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.06  E-value=1e-10  Score=86.76  Aligned_cols=88  Identities=16%  Similarity=0.090  Sum_probs=66.4

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP  138 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp  138 (189)
                      .++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++.        .+++++|+.+..   +..+||+|+++..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~~  102 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGDV  102 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence            35889999999999999999988889999999999999887653        278889987632   4568999999877


Q ss_pred             CCCCcccc-ccccccccCcC
Q psy13204        139 WGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       139 ~~~~~~~~-~~~~~~~~l~~  157 (189)
                      ++...... ....+.+++++
T Consensus       103 l~~~~~~~~~l~~~~~~L~~  122 (230)
T 3cc8_A          103 LEHLFDPWAVIEKVKPYIKQ  122 (230)
T ss_dssp             GGGSSCHHHHHHHTGGGEEE
T ss_pred             hhhcCCHHHHHHHHHHHcCC
Confidence            66543222 22344555533

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.05  E-value=8.4e-10  Score=86.02  Aligned_cols=100  Identities=13%  Similarity=0.109  Sum_probs=66.8

Q ss_pred             CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCC-----ceEEEeCCc------ccC---CCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSH-----KIQFIQGDF------FAL---APSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~------~~~---~~~~  128 (189)
                      +.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++....+...     ++++.+.|+      .+.   .+..
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~  128 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG  128 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred             CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence            789999999999877666555 5799999999999999999887665411     256778777      221   2456


Q ss_pred             CccEEEECCCCCCC----ccccccccccccCcCCCCchhHH
Q psy13204        129 QGDVVFLSPPWGGP----EYARSSFSIDNIFPEQGGGRRLF  165 (189)
Q Consensus       129 ~~D~v~~npp~~~~----~~~~~~~~~~~~l~~~~~g~~~~  165 (189)
                      +||+|++.-..+..    ........+.++|++  ||..++
T Consensus       129 ~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp--GG~~i~  167 (302)
T 2vdw_A          129 KFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS--GGKVLI  167 (302)
T ss_dssp             CEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE--EEEEEE
T ss_pred             CeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC--CCEEEE
Confidence            89999985443321    111123346666644  355443

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.05  E-value=6e-11  Score=89.36  Aligned_cols=69  Identities=20%  Similarity=0.289  Sum_probs=57.7

Q ss_pred             CCEEEEecCCCChHHHHHHHh------CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---C--CCCCccE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---A--PSLQGDV  132 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~--~~~~~D~  132 (189)
                      +.+|||+|||+|..+..+++.      +.+|+|+|+++.+++.|+      +...+++++++|+.+.   .  ....||+
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~fD~  155 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAHPL  155 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCCCE
Confidence            689999999999999999886      689999999999998876      1225899999999874   2  2337999


Q ss_pred             EEECCC
Q psy13204        133 VFLSPP  138 (189)
Q Consensus       133 v~~npp  138 (189)
                      |++|..
T Consensus       156 I~~d~~  161 (236)
T 2bm8_A          156 IFIDNA  161 (236)
T ss_dssp             EEEESS
T ss_pred             EEECCc
Confidence            999875

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.04  E-value=2.4e-10  Score=84.53  Aligned_cols=78  Identities=22%  Similarity=0.315  Sum_probs=61.0

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHH----HHhCCCCceEEEeCCcccCC-CCCCccEE
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNA----SVYGVSHKIQFIQGDFFALA-PSLQGDVV  133 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~----~~~~~~~~~~~~~~d~~~~~-~~~~~D~v  133 (189)
                      ..++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.+.+++    ...+. .+++++++|+.+.. +... |.+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-d~v  102 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-GEL  102 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-EEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-CEE
Confidence            445889999999999999999998  689999999999888643333    33455 48999999999875 3344 888


Q ss_pred             EECCCCC
Q psy13204        134 FLSPPWG  140 (189)
Q Consensus       134 ~~npp~~  140 (189)
                      ++..++.
T Consensus       103 ~~~~~~~  109 (218)
T 3mq2_A          103 HVLMPWG  109 (218)
T ss_dssp             EEESCCH
T ss_pred             EEEccch
Confidence            7766654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.03  E-value=7.8e-10  Score=85.43  Aligned_cols=79  Identities=13%  Similarity=0.096  Sum_probs=65.5

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC--C-CCceEEEeCCcccCC--CCCCccEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALA--PSLQGDVVF  134 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~--~~~~~D~v~  134 (189)
                      +.+.+|||+|||+|..+.++++.  ..+++++|+++.+++.|++++...+  + ..+++++++|+.+..  ...+||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            44789999999999999999887  4689999999999999999875432  1 247999999998764  356899999


Q ss_pred             ECCCCC
Q psy13204        135 LSPPWG  140 (189)
Q Consensus       135 ~npp~~  140 (189)
                      +|++..
T Consensus       157 ~d~~~~  162 (283)
T 2i7c_A          157 VDSSDP  162 (283)
T ss_dssp             EECCCT
T ss_pred             EcCCCC
Confidence            998654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.02  E-value=4.6e-10  Score=89.60  Aligned_cols=78  Identities=15%  Similarity=0.111  Sum_probs=66.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPP  138 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp  138 (189)
                      ...+|||+|||+|.++..+++.  +.+++++|+ +.+++.|++++...++.++++++.+|+.+..  -...||+|++.-.
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~v  257 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQF  257 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEech
Confidence            3789999999999999999885  668999999 9999999999988887668999999998852  1268999999766


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      .+.
T Consensus       258 lh~  260 (363)
T 3dp7_A          258 LDC  260 (363)
T ss_dssp             STT
T ss_pred             hhh
Confidence            664

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.00  E-value=3.2e-09  Score=83.46  Aligned_cols=79  Identities=23%  Similarity=0.225  Sum_probs=67.3

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  139 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~  139 (189)
                      .++.+|+|+|||+|.++..+++.  +.+++++|++ .+++.|++++...++.++++++.+|+.+......||+|++.-+.
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence            44789999999999999999987  6799999999 99999999999888866799999999875433459999996565


Q ss_pred             CC
Q psy13204        140 GG  141 (189)
Q Consensus       140 ~~  141 (189)
                      +.
T Consensus       243 ~~  244 (335)
T 2r3s_A          243 HH  244 (335)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.99  E-value=1.4e-09  Score=86.57  Aligned_cols=93  Identities=15%  Similarity=0.134  Sum_probs=72.6

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ++.+|+|+|||+|.++..+++.  +.+++++|+ +.+++.|++++...++.++++++.+|+.+... ...|+|++.-.++
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~v~~~~vlh  267 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-PEADAVLFCRILY  267 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-CCCSEEEEESCGG
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-CCCCEEEEechhc
Confidence            3789999999999999999987  568999999 99999999999988886679999999987642 2349999977776


Q ss_pred             CCccc---cccccccccCcC
Q psy13204        141 GPEYA---RSSFSIDNIFPE  157 (189)
Q Consensus       141 ~~~~~---~~~~~~~~~l~~  157 (189)
                      .....   .....+.+.+++
T Consensus       268 ~~~d~~~~~~l~~~~~~L~p  287 (359)
T 1x19_A          268 SANEQLSTIMCKKAFDAMRS  287 (359)
T ss_dssp             GSCHHHHHHHHHHHHTTCCT
T ss_pred             cCCHHHHHHHHHHHHHhcCC
Confidence            54321   123345555643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.99  E-value=1e-09  Score=77.88  Aligned_cols=72  Identities=21%  Similarity=0.167  Sum_probs=59.1

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---------CCCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---------APSL  128 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~  128 (189)
                      ..++.+|||+|||+|.++..+++.   +.+++|+|+++ +++.           .+++++++|+.+.         .+..
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCC
Confidence            345889999999999999999887   47999999999 6532           3789999999875         3456


Q ss_pred             CccEEEECCCCCCCcc
Q psy13204        129 QGDVVFLSPPWGGPEY  144 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~  144 (189)
                      +||+|++|+|++....
T Consensus        88 ~~D~i~~~~~~~~~~~  103 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGT  103 (180)
T ss_dssp             CEEEEEECCCCCCCSC
T ss_pred             ceeEEEECCCccccCC
Confidence            8999999999886543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.99  E-value=7e-10  Score=87.36  Aligned_cols=78  Identities=21%  Similarity=0.182  Sum_probs=66.6

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      ..+|+|+|||+|.++..+++.  +.+++++|+ +.+++.|++++...++.++++++.+|+.+..+. .||+|++.-..+.
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~-~~D~v~~~~vlh~  247 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPA-GAGGYVLSAVLHD  247 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC-SCSEEEEESCGGG
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCC-CCcEEEEehhhcc
Confidence            679999999999999999886  568999999 999999999999888877899999999854444 8999999766654


Q ss_pred             Cc
Q psy13204        142 PE  143 (189)
Q Consensus       142 ~~  143 (189)
                      ..
T Consensus       248 ~~  249 (332)
T 3i53_A          248 WD  249 (332)
T ss_dssp             SC
T ss_pred             CC
Confidence            33

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.98  E-value=4e-09  Score=84.21  Aligned_cols=78  Identities=24%  Similarity=0.262  Sum_probs=67.3

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ++.+|+|+|||+|.++..+++.  +.+++++|+ +.+++.|++++...++.++++++++|+.+..+. .||+|+++..++
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v~~~~vl~  259 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV-TADVVLLSFVLL  259 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-CEEEEEEESCGG
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCC-CCCEEEEecccc
Confidence            4789999999999999999987  568999999 999999999999888866899999999874443 499999987776


Q ss_pred             CC
Q psy13204        141 GP  142 (189)
Q Consensus       141 ~~  142 (189)
                      ..
T Consensus       260 ~~  261 (374)
T 1qzz_A          260 NW  261 (374)
T ss_dssp             GS
T ss_pred             CC
Confidence            43

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.96  E-value=4.1e-10  Score=89.31  Aligned_cols=79  Identities=18%  Similarity=0.153  Sum_probs=68.1

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPW  139 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~  139 (189)
                      +.+|+|+|||+|.++..+++.  +.+++++|+ +.+++.++++....++.++++++.+|+.+..  ....||+|++.-..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence            679999999999999999987  568999999 8899999999998888667999999998875  45679999997766


Q ss_pred             CCCc
Q psy13204        140 GGPE  143 (189)
Q Consensus       140 ~~~~  143 (189)
                      +...
T Consensus       259 h~~~  262 (352)
T 3mcz_A          259 HYFD  262 (352)
T ss_dssp             GGSC
T ss_pred             ccCC
Confidence            6433

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.95  E-value=1.2e-09  Score=83.30  Aligned_cols=102  Identities=12%  Similarity=0.033  Sum_probs=70.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC----------------------------Cc
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS----------------------------HK  113 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~----------------------------~~  113 (189)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|++++......                            .+
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  134 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence            377999999999998888777765 6999999999999999887543210                            12


Q ss_pred             eE-EEeCCcccCC-----CCCCccEEEECCCCCCC-----ccccccccccccCcCCCCchhHHH
Q psy13204        114 IQ-FIQGDFFALA-----PSLQGDVVFLSPPWGGP-----EYARSSFSIDNIFPEQGGGRRLFQ  166 (189)
Q Consensus       114 ~~-~~~~d~~~~~-----~~~~~D~v~~npp~~~~-----~~~~~~~~~~~~l~~~~~g~~~~~  166 (189)
                      +. ++++|+.+..     ...+||+|++.--.+..     +.......+.++|++  ||..++.
T Consensus       135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP--GG~li~~  196 (263)
T 2a14_A          135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP--GGHLVTT  196 (263)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE--EEEEEEE
T ss_pred             hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC--CcEEEEE
Confidence            33 8899988742     24589999997554431     111233445677755  4654443

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.95  E-value=6e-09  Score=75.89  Aligned_cols=69  Identities=19%  Similarity=0.190  Sum_probs=55.6

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------  125 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------  125 (189)
                      ++++.+|||+|||+|.++..+++.    +.+|+|+|+++.+           .. .+++++++|+.+..           
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhccccccc
Confidence            456889999999999999999887    3689999999831           12 47899999987753           


Q ss_pred             ---------------CCCCccEEEECCCCCC
Q psy13204        126 ---------------PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 ---------------~~~~~D~v~~npp~~~  141 (189)
                                     +..+||+|++|++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~  118 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPC  118 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCC
Confidence                           3458999999987765

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.95  E-value=5.2e-10  Score=82.91  Aligned_cols=75  Identities=11%  Similarity=0.062  Sum_probs=60.5

Q ss_pred             HHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEE
Q psy13204         55 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVV  133 (189)
Q Consensus        55 ~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v  133 (189)
                      ..+....+ +.+|||+|||+|.++..+++.    +|+|+++.+++.++++        +++++++|+.+.. +..+||+|
T Consensus        40 ~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v  106 (219)
T 1vlm_A           40 QAVKCLLP-EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFA  106 (219)
T ss_dssp             HHHHHHCC-SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEE
T ss_pred             HHHHHhCC-CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEE
Confidence            34444455 889999999999999988765    9999999999998876        5688999988765 45689999


Q ss_pred             EECCCCCCC
Q psy13204        134 FLSPPWGGP  142 (189)
Q Consensus       134 ~~npp~~~~  142 (189)
                      +++..++..
T Consensus       107 ~~~~~l~~~  115 (219)
T 1vlm_A          107 LMVTTICFV  115 (219)
T ss_dssp             EEESCGGGS
T ss_pred             EEcchHhhc
Confidence            998766554

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.94  E-value=2e-09  Score=81.59  Aligned_cols=78  Identities=15%  Similarity=0.019  Sum_probs=62.6

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCC----------------------------CCc
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGV----------------------------SHK  113 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~----------------------------~~~  113 (189)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++...+.                            ..+
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  135 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA  135 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence            367999999999999999998887 899999999999999988754321                            012


Q ss_pred             e-EEEeCCcccCC--CC---CCccEEEECCCCC
Q psy13204        114 I-QFIQGDFFALA--PS---LQGDVVFLSPPWG  140 (189)
Q Consensus       114 ~-~~~~~d~~~~~--~~---~~~D~v~~npp~~  140 (189)
                      + ++.++|+.+..  +.   .+||+|+++-..+
T Consensus       136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~  168 (265)
T 2i62_A          136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD  168 (265)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH
T ss_pred             heeEEEeeeccCCCCCccccCCccEEEEhhhhh
Confidence            7 89999998764  34   6899999975554

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.94  E-value=2.4e-09  Score=84.90  Aligned_cols=105  Identities=15%  Similarity=0.253  Sum_probs=68.8

Q ss_pred             CEEEEecCCCChHHHHHHHhC--C-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC----CCccEEEECC
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVC--Q-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS----LQGDVVFLSP  137 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~--~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~D~v~~np  137 (189)
                      .+|+|++||.|++++.+.++|  . .|.++|+++.+++..+.|..      +..++++|+.+....    ..+|+++++|
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            479999999999999999988  3 47899999999999998864      445788998887521    2689999999


Q ss_pred             CCCCCccccccccccccCcCCCCch-hHHHHhhhcC--CceEEE
Q psy13204        138 PWGGPEYARSSFSIDNIFPEQGGGR-RLFQVARGIS--PNVGYY  178 (189)
Q Consensus       138 p~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~--~~~~~~  178 (189)
                      ||+..+.........+   .+++.+ .++.....+.  |+..++
T Consensus        77 PCq~fS~ag~~~g~~d---~r~~l~~~~~~~i~~~~~~P~~~~~  117 (343)
T 1g55_A           77 PCQPFTRIGRQGDMTD---SRTNSFLHILDILPRLQKLPKYILL  117 (343)
T ss_dssp             C---------------------CHHHHHHHHGGGCSSCCSEEEE
T ss_pred             CCcchhhcCCcCCccC---ccchHHHHHHHHHHHhcCCCCEEEE
Confidence            9998776542222111   111233 4666777777  776665

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.93  E-value=2.7e-10  Score=87.94  Aligned_cols=101  Identities=14%  Similarity=0.052  Sum_probs=66.4

Q ss_pred             CCCEEEEecCCCChHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHH-----------------hCCC------------C
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASV-----------------YGVS------------H  112 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~-----------------~~~~------------~  112 (189)
                      ++.+|||+|||+|..+..+++ .+.+|+|+|+|+.|++.|++++..                 .+..            .
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            478999999999996655554 377999999999999999886532                 1100            0


Q ss_pred             ceEEEeCCcccCC-------CCCCccEEEECCCCCCCcc-----ccccccccccCcCCCCchhHH
Q psy13204        113 KIQFIQGDFFALA-------PSLQGDVVFLSPPWGGPEY-----ARSSFSIDNIFPEQGGGRRLF  165 (189)
Q Consensus       113 ~~~~~~~d~~~~~-------~~~~~D~v~~npp~~~~~~-----~~~~~~~~~~l~~~~~g~~~~  165 (189)
                      .++++++|+.+..       +..+||+|+++-.++....     ......+.++|++  ||..++
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp--GG~l~~  213 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP--GGHLLL  213 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE--EEEEEE
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC--CCEEEE
Confidence            1567788887732       2346999999876655211     1133446666744  355333

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.92  E-value=1e-09  Score=84.37  Aligned_cols=129  Identities=15%  Similarity=0.099  Sum_probs=77.4

Q ss_pred             cccCCCcccccCh--HHHHHHHHHhCCCCCEEEEecCCCCh----HHHHHHHh------CCeEEEEeCCHHHHHHHHHHH
Q psy13204         38 DNDATESWYSVTP--EKVAQHIASRCKASDVVIDGFCGCGG----NTIQFAAV------CQKVISIDIDPAKLRLAQHNA  105 (189)
Q Consensus        38 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vlD~g~G~G~----~~~~~~~~------~~~v~~vD~~~~~~~~a~~~~  105 (189)
                      +.+....||....  +.+...+... ..+.+|+|+|||+|.    +++.++..      +.+|+|+|+|+.+++.|++++
T Consensus        79 lt~~~t~FfRd~~~f~~l~~~llp~-~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A           79 LTTNLTAFFREAHHFPILAEHARRR-HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             HCCCCCCTTTTTTHHHHHHHHHHHS-CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             HhhcCccccCChHHHHHHHHHccCC-CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            3344455665322  2223333222 235689999999998    56666654      358999999999999999874


Q ss_pred             HH-----------------------hC-------CCCceEEEeCCcccCC-C-CCCccEEEECCCCCCCcccc---cccc
Q psy13204        106 SV-----------------------YG-------VSHKIQFIQGDFFALA-P-SLQGDVVFLSPPWGGPEYAR---SSFS  150 (189)
Q Consensus       106 ~~-----------------------~~-------~~~~~~~~~~d~~~~~-~-~~~~D~v~~npp~~~~~~~~---~~~~  150 (189)
                      ..                       .+       +..+++|.++|+.+.. + ...||+|+|.-.....+...   ....
T Consensus       158 y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~  237 (274)
T 1af7_A          158 YRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRR  237 (274)
T ss_dssp             EEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHH
T ss_pred             CchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHH
Confidence            10                       00       0125899999998842 3 46899999943333222221   2234


Q ss_pred             ccccCcCCCCchhHHHHhh
Q psy13204        151 IDNIFPEQGGGRRLFQVAR  169 (189)
Q Consensus       151 ~~~~l~~~~~g~~~~~~~~  169 (189)
                      +.+.|++  ||+.++....
T Consensus       238 ~~~~L~p--gG~L~lg~sE  254 (274)
T 1af7_A          238 FVPLLKP--DGLLFAGHSE  254 (274)
T ss_dssp             HGGGEEE--EEEEEECTTC
T ss_pred             HHHHhCC--CcEEEEEecc
Confidence            5556644  4665554443

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.91  E-value=2.7e-10  Score=85.54  Aligned_cols=89  Identities=10%  Similarity=0.010  Sum_probs=56.4

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC--CceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS--HKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      +.+|||+|||+|.++..+++.+. +|+|+|+++.|++.|+++.......  .++.+..  ..+. +...+|.+.+|..|.
T Consensus        38 g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~d~~~~D~v~~  114 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAV--LADF-EQGRPSFTSIDVSFI  114 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCC--GGGC-CSCCCSEEEECCSSS
T ss_pred             CCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeC--HhHc-CcCCCCEEEEEEEhh
Confidence            67999999999999999999874 9999999999999876653311100  0111111  1111 112357777777776


Q ss_pred             CCccccccccccccCcC
Q psy13204        141 GPEYARSSFSIDNIFPE  157 (189)
Q Consensus       141 ~~~~~~~~~~~~~~l~~  157 (189)
                      ..  ......+.++|++
T Consensus       115 ~l--~~~l~~i~rvLkp  129 (232)
T 3opn_A          115 SL--DLILPPLYEILEK  129 (232)
T ss_dssp             CG--GGTHHHHHHHSCT
T ss_pred             hH--HHHHHHHHHhccC
Confidence            53  2233456667744

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=98.91  E-value=7.2e-09  Score=83.05  Aligned_cols=104  Identities=19%  Similarity=0.207  Sum_probs=74.5

Q ss_pred             CEEEEecCCCChHHHHHHHhCCeE-EEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---------CCCCccEEE
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVCQKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------PSLQGDVVF  134 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~D~v~  134 (189)
                      -+++|++||.|++++.+.++|.++ .++|+++.+++..+.|..      +..++++|+.+..         ....+|+++
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            479999999999999999999875 599999999999888753      5678899988774         135799999


Q ss_pred             ECCCCCCCccccccccccccCcCCCCch-hHHHHhhhcCCceEEE
Q psy13204        135 LSPPWGGPEYARSSFSIDNIFPEQGGGR-RLFQVARGISPNVGYY  178 (189)
Q Consensus       135 ~npp~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~  178 (189)
                      .+|||+..+..... .   .-..++..+ .++.....+.|+..++
T Consensus        77 ggpPCQ~fS~ag~~-~---~~d~r~~L~~~~~~~v~~~~P~~~v~  117 (376)
T 3g7u_A           77 GGPPCQGFSSIGKG-N---PDDSRNQLYMHFYRLVSELQPLFFLA  117 (376)
T ss_dssp             ECCCCCTTC-----------CHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             ecCCCCCcccccCC-C---CCCchHHHHHHHHHHHHHhCCCEEEE
Confidence            99999987765522 1   111111122 5666677777876665

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.91  E-value=1e-08  Score=81.40  Aligned_cols=78  Identities=22%  Similarity=0.280  Sum_probs=66.5

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++++...++.++++++.+|+.+..+. .||+|++...++
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v~~~~vl~  260 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR-KADAIILSFVLL  260 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSS-CEEEEEEESCGG
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCC-CccEEEEccccc
Confidence            3789999999999999999887  457899999 999999999999888866899999999874443 499999977766


Q ss_pred             CC
Q psy13204        141 GP  142 (189)
Q Consensus       141 ~~  142 (189)
                      ..
T Consensus       261 ~~  262 (360)
T 1tw3_A          261 NW  262 (360)
T ss_dssp             GS
T ss_pred             CC
Confidence            43

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.91  E-value=8e-09  Score=82.13  Aligned_cols=82  Identities=17%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHhCCC-----CceEEEeCCcccCC--CCCCcc
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVS-----HKIQFIQGDFFALA--PSLQGD  131 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~~~~~d~~~~~--~~~~~D  131 (189)
                      .++|.+|||+|||.|+-+..+++.+.  .++++|+++..++.+++|+...+..     .++.+.+.|...+.  ....||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            34589999999999999999988744  6999999999999999999887652     36889999988764  456899


Q ss_pred             EEEECCCCCCC
Q psy13204        132 VVFLSPPWGGP  142 (189)
Q Consensus       132 ~v~~npp~~~~  142 (189)
                      .|++|+||.+.
T Consensus       226 ~VLlDaPCSg~  236 (359)
T 4fzv_A          226 RVLVDVPCTTD  236 (359)
T ss_dssp             EEEEECCCCCH
T ss_pred             EEEECCccCCC
Confidence            99999999974

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.91  E-value=2.5e-09  Score=82.23  Aligned_cols=91  Identities=12%  Similarity=-0.005  Sum_probs=68.5

Q ss_pred             CCEEEEecCCC---ChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC------------CC
Q psy13204         64 SDVVIDGFCGC---GGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL------------AP  126 (189)
Q Consensus        64 ~~~vlD~g~G~---G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------------~~  126 (189)
                      ..+|||+|||+   |.++..+++.  +.+|+++|+|+.+++.|++++...   .+++++++|+.+.            .+
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccCC
Confidence            47999999999   9887766654  679999999999999999887422   4799999998753            22


Q ss_pred             CCCccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204        127 SLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       127 ~~~~D~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      ..+||+|+++-.++......   ....+.+.|++
T Consensus       155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p  188 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP  188 (274)
T ss_dssp             TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT
T ss_pred             CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCC
Confidence            24799999988777655422   33445556644

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.90  E-value=2e-09  Score=82.30  Aligned_cols=75  Identities=9%  Similarity=-0.165  Sum_probs=61.9

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh--CC-CCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALAPSLQGDVVFLSPP  138 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~D~v~~npp  138 (189)
                      +.+.+|||+|||+|..+.++++.+.+++++|+++.+++.|++++...  ++ ..+++++.+|+.++.  .+||+|++|.+
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~~  148 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQE  148 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESSC
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECCC
Confidence            34789999999999999998876678999999999999998775321  11 147999999998876  78999999953

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=98.88  E-value=2.3e-08  Score=78.66  Aligned_cols=103  Identities=17%  Similarity=0.210  Sum_probs=74.3

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--CCCccEEEECCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPWG  140 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~npp~~  140 (189)
                      +.+++|++||.|++++.+.++|.+ +.++|+++.+++..+.|....      .  ++|+.+...  -..+|+++++|||+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~------~--~~Di~~~~~~~~~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK------P--EGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC------C--BSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC------C--cCCHHHcCHhhCCCCCEEEECCCCC
Confidence            568999999999999999999887 568999999999999887421      1  688877652  23589999999999


Q ss_pred             CCccccccccccccCcCCCCch-hHHHHhhhcCCceEE
Q psy13204        141 GPEYARSSFSIDNIFPEQGGGR-RLFQVARGISPNVGY  177 (189)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~  177 (189)
                      ..+.........+   .++..+ .++.......|+..+
T Consensus        83 ~fS~ag~~~g~~d---~r~~L~~~~~r~i~~~~P~~~~  117 (327)
T 2c7p_A           83 AFSISGKQKGFED---SRGTLFFDIARIVREKKPKVVF  117 (327)
T ss_dssp             TTCTTSCCCGGGS---TTSCHHHHHHHHHHHHCCSEEE
T ss_pred             CcchhcccCCCcc---hhhHHHHHHHHHHHhccCcEEE
Confidence            9876653222211   111222 566666777776554

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.88  E-value=6.6e-10  Score=87.49  Aligned_cols=75  Identities=23%  Similarity=0.323  Sum_probs=64.8

Q ss_pred             CEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         65 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      .+|+|+|||+|..+..+++.  +.+++++|+ +.+++.|++++...++.++++++.+|+.+..+ ..||+|++.-..+.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~v~~~~vl~~  245 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVP-SNGDIYLLSRIIGD  245 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCC-SSCSEEEEESCGGG
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCC-CCCCEEEEchhccC
Confidence            79999999999999999887  668999999 99999999998777765689999999987434 57999999776653

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.88  E-value=6.3e-09  Score=79.52  Aligned_cols=76  Identities=20%  Similarity=0.248  Sum_probs=64.7

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------CCCCccEEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVVFL  135 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v~~  135 (189)
                      +++..++|.+||.|+.+..+++.+.+|+|+|.++.+++.|++ +..    ++++++++++.++.      ....+|.|++
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~   95 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALGVERVDGILA   95 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcCCCCcCEEEe
Confidence            458899999999999999999888899999999999999987 532    48999999998763      2247999999


Q ss_pred             CCCCCCC
Q psy13204        136 SPPWGGP  142 (189)
Q Consensus       136 npp~~~~  142 (189)
                      |+.+.-+
T Consensus        96 DLGvSS~  102 (285)
T 1wg8_A           96 DLGVSSF  102 (285)
T ss_dssp             ECSCCHH
T ss_pred             CCccccc
Confidence            9997753

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.88  E-value=3.2e-09  Score=73.11  Aligned_cols=78  Identities=13%  Similarity=0.038  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHhCCCCCEEEEecCCCC-hHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC
Q psy13204         50 PEKVAQHIASRCKASDVVIDGFCGCG-GNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS  127 (189)
Q Consensus        50 ~~~~~~~~~~~~~~~~~vlD~g~G~G-~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  127 (189)
                      .+.+.+.+.+....+.+|+|+|||.| ..+..+++ .|..|+++|+++.+++                ++++|+++....
T Consensus        22 ~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~~   85 (153)
T 2k4m_A           22 WNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRME   85 (153)
T ss_dssp             HHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCHH
T ss_pred             HHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCccc
Confidence            35688888888877889999999999 69999997 7999999999997775                888999875422


Q ss_pred             --CCccEE-EECCCCCCCc
Q psy13204        128 --LQGDVV-FLSPPWGGPE  143 (189)
Q Consensus       128 --~~~D~v-~~npp~~~~~  143 (189)
                        ..||+| -+|||-....
T Consensus        86 ~Y~~~DLIYsirPP~El~~  104 (153)
T 2k4m_A           86 IYRGAALIYSIRPPAEIHS  104 (153)
T ss_dssp             HHTTEEEEEEESCCTTTHH
T ss_pred             ccCCcCEEEEcCCCHHHHH
Confidence              489999 7799987644

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.86  E-value=2e-09  Score=83.16  Aligned_cols=86  Identities=13%  Similarity=0.048  Sum_probs=59.1

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEE-EeCCcccCC----CCCCccEEEECC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQF-IQGDFFALA----PSLQGDVVFLSP  137 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~----~~~~~D~v~~np  137 (189)
                      +.+|||+|||+|.++..+++.++ +|+|+|+++.|++.+.++-      .++.. ...|+....    +...||++++|-
T Consensus        86 g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~  159 (291)
T 3hp7_A           86 DMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEPVDFTEGLPSFASIDV  159 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred             ccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecchhhCCCCCCCEEEEEe
Confidence            77999999999999999998865 8999999999998754321      13222 223333322    334599999998


Q ss_pred             CCCCCccccccccccccCcC
Q psy13204        138 PWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       138 p~~~~~~~~~~~~~~~~l~~  157 (189)
                      .|+..  ...+..+.++|++
T Consensus       160 sf~sl--~~vL~e~~rvLkp  177 (291)
T 3hp7_A          160 SFISL--NLILPALAKILVD  177 (291)
T ss_dssp             SSSCG--GGTHHHHHHHSCT
T ss_pred             eHhhH--HHHHHHHHHHcCc
Confidence            88743  3334456666644

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.86  E-value=3.5e-10  Score=86.52  Aligned_cols=75  Identities=11%  Similarity=0.189  Sum_probs=64.9

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~npp  138 (189)
                      +..++|+++|||.+++++.+.+.+++.+|.++..++..++|+..   ..++++++.|....+     +..+||+|++|||
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP  168 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS  168 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred             CCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence            56789999999999999988888999999999999999999864   257999999976643     3457999999999


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      |..
T Consensus       169 Ye~  171 (283)
T 2oo3_A          169 YER  171 (283)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            984

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.83  E-value=4.3e-08  Score=71.75  Aligned_cols=92  Identities=17%  Similarity=0.245  Sum_probs=71.0

Q ss_pred             cccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCC--CCceEEEeCCcc
Q psy13204         46 YSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGV--SHKIQFIQGDFF  122 (189)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~  122 (189)
                      ....++. .+++...+...++|||+||  |..++.+++. +.+|+.+|.+++..+.|++++...|+  .++++++.+|+.
T Consensus        14 ~~v~~~~-~~~L~~~l~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~   90 (202)
T 3cvo_A           14 LTMPPAE-AEALRMAYEEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIG   90 (202)
T ss_dssp             CCSCHHH-HHHHHHHHHHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCS
T ss_pred             ccCCHHH-HHHHHHHhhCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCch
Confidence            3344432 3444334455889999998  5788888887 78999999999999999999999997  678999999976


Q ss_pred             cC------------------------C-CCCCccEEEECCCCC
Q psy13204        123 AL------------------------A-PSLQGDVVFLSPPWG  140 (189)
Q Consensus       123 ~~------------------------~-~~~~~D~v~~npp~~  140 (189)
                      +.                        . ....||+|++|-.+.
T Consensus        91 ~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~  133 (202)
T 3cvo_A           91 PTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR  133 (202)
T ss_dssp             SBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH
T ss_pred             hhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc
Confidence            53                        1 125799999997644

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.82  E-value=1.6e-09  Score=83.84  Aligned_cols=93  Identities=5%  Similarity=-0.049  Sum_probs=64.2

Q ss_pred             CCEEEEecCCCChHHHHHH----Hh--CCeE--EEEeCCHHHHHHHHHHHHHh-CCCCce--EEEeCCcccCC-------
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AV--CQKV--ISIDIDPAKLRLAQHNASVY-GVSHKI--QFIQGDFFALA-------  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~--~~~v--~~vD~~~~~~~~a~~~~~~~-~~~~~~--~~~~~d~~~~~-------  125 (189)
                      +.+|||+|||+|.++..+.    ..  +..+  +|+|.|++|++.|++++... ++ .++  .+..+++.+..       
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhcccc
Confidence            6699999999998765432    22  3433  99999999999999988653 34 344  45567765532       


Q ss_pred             CCCCccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204        126 PSLQGDVVFLSPPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       126 ~~~~~D~v~~npp~~~~~~~~-~~~~~~~~l~~  157 (189)
                      ++.+||+|++.-..++..... ....+.++|++
T Consensus       132 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkp  164 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGT  164 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEE
T ss_pred             CCCceeEEEEeeeeeecCCHHHHHHHHHHHcCC
Confidence            357899999987777654333 34456666644

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.82  E-value=2.4e-10  Score=92.64  Aligned_cols=107  Identities=10%  Similarity=0.149  Sum_probs=70.1

Q ss_pred             HHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceE-EEeCCcccCC-CCC
Q psy13204         53 VAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQ-FIQGDFFALA-PSL  128 (189)
Q Consensus        53 ~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~-~~~  128 (189)
                      ..+.+.+.+.  ++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++    +...... +..++..+.. +..
T Consensus        95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~  170 (416)
T 4e2x_A           95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEG  170 (416)
T ss_dssp             HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCC
Confidence            4444555443  478999999999999999999999999999999999998765    3311111 1122222222 357


Q ss_pred             CccEEEECCCCCCCcccc-ccccccccCcCCCCchhHH
Q psy13204        129 QGDVVFLSPPWGGPEYAR-SSFSIDNIFPEQGGGRRLF  165 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~-~~~~~~~~l~~~~~g~~~~  165 (189)
                      +||+|+++-.+++..... ....+.++|++  ||..++
T Consensus       171 ~fD~I~~~~vl~h~~d~~~~l~~~~r~Lkp--gG~l~i  206 (416)
T 4e2x_A          171 PANVIYAANTLCHIPYVQSVLEGVDALLAP--DGVFVF  206 (416)
T ss_dssp             CEEEEEEESCGGGCTTHHHHHHHHHHHEEE--EEEEEE
T ss_pred             CEEEEEECChHHhcCCHHHHHHHHHHHcCC--CeEEEE
Confidence            899999987777654332 33345556643  354333

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.79  E-value=7.1e-10  Score=85.37  Aligned_cols=75  Identities=16%  Similarity=0.133  Sum_probs=55.5

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH-HhCCCCceEEE--eCCcccCCCCCCccEEEECC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS-VYGVSHKIQFI--QGDFFALAPSLQGDVVFLSP  137 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~--~~d~~~~~~~~~~D~v~~np  137 (189)
                      ++++.+|||+|||+|.++..+++. .+|+|+|+++ +...++++.. ......++.++  ++|+.++. ..+||+|++|.
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~Vvsd~  156 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PFQADTVLCDI  156 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CCCCSEEEECC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CCCcCEEEECC
Confidence            345889999999999999999988 7999999998 5333221110 00111168899  99998864 57899999997


Q ss_pred             C
Q psy13204        138 P  138 (189)
Q Consensus       138 p  138 (189)
                      .
T Consensus       157 ~  157 (276)
T 2wa2_A          157 G  157 (276)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.76  E-value=1e-09  Score=83.98  Aligned_cols=75  Identities=17%  Similarity=0.131  Sum_probs=55.2

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH-HhCCCCceEEE--eCCcccCCCCCCccEEEECC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS-VYGVSHKIQFI--QGDFFALAPSLQGDVVFLSP  137 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~--~~d~~~~~~~~~~D~v~~np  137 (189)
                      ++++.+|||+|||+|.++..+++. .+|+|+|+++ +...++++.. ......++.++  ++|+.++. ..+||+|++|.
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~V~sd~  148 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-VERTDVIMCDV  148 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-CCCCSEEEECC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC-CCCCcEEEEeC
Confidence            445889999999999999999988 8999999998 4322211100 00010167889  99998864 57899999997


Q ss_pred             C
Q psy13204        138 P  138 (189)
Q Consensus       138 p  138 (189)
                      .
T Consensus       149 ~  149 (265)
T 2oxt_A          149 G  149 (265)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=98.75  E-value=4.6e-08  Score=76.93  Aligned_cols=103  Identities=19%  Similarity=0.244  Sum_probs=75.2

Q ss_pred             EEEEecCCCChHHHHHHHhCCeE-EEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCCCC
Q psy13204         66 VVIDGFCGCGGNTIQFAAVCQKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~~  142 (189)
                      +|+|++||.|+++..+.++|.++ .++|+++.+.+..+.|.       ...++++|+.+..  .-..+|+++..|||+..
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-------~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~f   74 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSDEFPKCDGIIGGPPSQSW   74 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-------CSEEEESCGGGCCGGGSCCCSEEECCCCGGGT
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-------CCCcccCChhhCCHhhCCcccEEEecCCCCCc
Confidence            68999999999999999998875 58999999999888774       3467889998875  22468999999999997


Q ss_pred             ccccccccccccCcCCCCch-hHHHHhhhcCCceEEE
Q psy13204        143 EYARSSFSIDNIFPEQGGGR-RLFQVARGISPNVGYY  178 (189)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~  178 (189)
                      +.........+  +. +..+ .++.......|+..++
T Consensus        75 S~ag~~~g~~d--~R-~~L~~~~~r~i~~~~Pk~~~~  108 (331)
T 3ubt_Y           75 SEGGSLRGIDD--PR-GKLFYEYIRILKQKKPIFFLA  108 (331)
T ss_dssp             EETTEECCTTC--GG-GHHHHHHHHHHHHHCCSEEEE
T ss_pred             CCCCCccCCCC--ch-hHHHHHHHHHHhccCCeEEEe
Confidence            76653222221  11 1122 5566667777776543

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=98.75  E-value=5.7e-08  Score=76.58  Aligned_cols=104  Identities=13%  Similarity=0.233  Sum_probs=73.9

Q ss_pred             CEEEEecCCCChHHHHHHHhCC--e-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEECC
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVCQ--K-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSP  137 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~~--~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~np  137 (189)
                      -+++|++||.|+++..+.++|.  + +.++|+++.+.+..+.|..      ...+.++|+.+..    +...+|+++..|
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~ggp   77 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTILMSP   77 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEEecC
Confidence            3699999999999999999874  4 6799999999999888863      4456788888775    223689999999


Q ss_pred             CCCCCccccccccccccCcCCCCch-hHHHHhhhcC-CceEE
Q psy13204        138 PWGGPEYARSSFSIDNIFPEQGGGR-RLFQVARGIS-PNVGY  177 (189)
Q Consensus       138 p~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~-~~~~~  177 (189)
                      ||+..+.........+   .++..+ .++....... |+..+
T Consensus        78 PCQ~fS~ag~~~~~~d---~r~~L~~~~~r~i~~~~~P~~~v  116 (333)
T 4h0n_A           78 PCQPFTRNGKYLDDND---PRTNSFLYLIGILDQLDNVDYIL  116 (333)
T ss_dssp             CCCCSEETTEECCTTC---TTSCCHHHHHHHGGGCTTCCEEE
T ss_pred             CCcchhhhhhccCCcC---cccccHHHHHHHHHHhcCCCEEE
Confidence            9999776552222221   111222 5556666665 66544

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.74  E-value=2.5e-09  Score=78.85  Aligned_cols=85  Identities=16%  Similarity=0.117  Sum_probs=59.3

Q ss_pred             HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCc
Q psy13204         52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG  130 (189)
Q Consensus        52 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  130 (189)
                      .+...+.. ..++.+|||+|||+|.++..+   +.+++|+|+++.                +++++++|+.+.. +..+|
T Consensus        57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~f  116 (215)
T 2zfu_A           57 RIARDLRQ-RPASLVVADFGCGDCRLASSI---RNPVHCFDLASL----------------DPRVTVCDMAQVPLEDESV  116 (215)
T ss_dssp             HHHHHHHT-SCTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS----------------STTEEESCTTSCSCCTTCE
T ss_pred             HHHHHHhc-cCCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC----------------CceEEEeccccCCCCCCCE
Confidence            34444432 345789999999999998877   478999999987                4577889988764 55689


Q ss_pred             cEEEECCCCCCCccccccccccccCc
Q psy13204        131 DVVFLSPPWGGPEYARSSFSIDNIFP  156 (189)
Q Consensus       131 D~v~~npp~~~~~~~~~~~~~~~~l~  156 (189)
                      |+|+++..++..+.......+.++++
T Consensus       117 D~v~~~~~l~~~~~~~~l~~~~~~L~  142 (215)
T 2zfu_A          117 DVAVFCLSLMGTNIRDFLEEANRVLK  142 (215)
T ss_dssp             EEEEEESCCCSSCHHHHHHHHHHHEE
T ss_pred             eEEEEehhccccCHHHHHHHHHHhCC
Confidence            99999888864222222233445553

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.72  E-value=7.7e-08  Score=74.70  Aligned_cols=60  Identities=23%  Similarity=0.346  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHhC-CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhC
Q psy13204         50 PEKVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYG  109 (189)
Q Consensus        50 ~~~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  109 (189)
                      |..+.+.+.... .++..|||+|||+|..++++++.|.+++|+|+++.+++.|++++....
T Consensus       221 p~~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          221 PLELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             CHHHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            445665555544 458899999999999999999999999999999999999999987653

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.71  E-value=2.7e-08  Score=84.22  Aligned_cols=72  Identities=11%  Similarity=0.118  Sum_probs=59.2

Q ss_pred             CCEEEEecCCCChHHHHHHHh----CC--eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEEC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV----CQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  136 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~----~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~n  136 (189)
                      +.+|+|+|||+|-++..+.++    +.  +|++||.|+ +...|++....++..+.|+++++|+++....+++|+||+.
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSE  435 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSE  435 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEE
Confidence            457999999999996555544    22  689999998 4556788888999988899999999998766899999984

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.69  E-value=3.9e-09  Score=84.65  Aligned_cols=68  Identities=19%  Similarity=0.132  Sum_probs=53.0

Q ss_pred             hCCCCCEEEEecCC------CChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C---
Q psy13204         60 RCKASDVVIDGFCG------CGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P---  126 (189)
Q Consensus        60 ~~~~~~~vlD~g~G------~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~---  126 (189)
                      ...++.+|||+|||      +|+.++.+++.   +.+|+|+|+++.+.         .. ..+++++++|+.+.. .   
T Consensus       213 l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~-~~rI~fv~GDa~dlpf~~~l  282 (419)
T 3sso_A          213 YRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VD-ELRIRTIQGDQNDAEFLDRI  282 (419)
T ss_dssp             GTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GC-BTTEEEEECCTTCHHHHHHH
T ss_pred             hcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hc-CCCcEEEEecccccchhhhh
Confidence            33447899999999      77878877764   67999999999872         11 248999999998753 2   


Q ss_pred             ---CCCccEEEECC
Q psy13204        127 ---SLQGDVVFLSP  137 (189)
Q Consensus       127 ---~~~~D~v~~np  137 (189)
                         ..+||+|++|-
T Consensus       283 ~~~d~sFDlVisdg  296 (419)
T 3sso_A          283 ARRYGPFDIVIDDG  296 (419)
T ss_dssp             HHHHCCEEEEEECS
T ss_pred             hcccCCccEEEECC
Confidence               47899999974

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=98.69  E-value=1.9e-07  Score=72.33  Aligned_cols=102  Identities=12%  Similarity=0.118  Sum_probs=73.8

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeE---EEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-----CCCccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKV---ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v---~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~D~v~~  135 (189)
                      .-+++|++||.|++++.+.++|.++   .++|+++.+.+..+.|..      ...+.++|+.+...     ...+|+++.
T Consensus        16 ~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~~Dll~g   89 (295)
T 2qrv_A           16 PIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGPFDLVIG   89 (295)
T ss_dssp             CEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCCCSEEEE
T ss_pred             CCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCCcCEEEe
Confidence            5689999999999999999998765   799999999988877752      44678899988751     136899999


Q ss_pred             CCCCCCCcccc-ccccccccCcCCCCch-hHHHHhhhcCCc
Q psy13204        136 SPPWGGPEYAR-SSFSIDNIFPEQGGGR-RLFQVARGISPN  174 (189)
Q Consensus       136 npp~~~~~~~~-~~~~~~~~l~~~~~g~-~~~~~~~~~~~~  174 (189)
                      .|||+..+... ......+   .++..+ .++.......|+
T Consensus        90 gpPCQ~fS~ag~~r~g~~d---~r~~L~~~~~rii~~~~P~  127 (295)
T 2qrv_A           90 GSPCNDLSIVNPARKGLYE---GTGRLFFEFYRLLHDARPK  127 (295)
T ss_dssp             CCCCGGGBTTCTTCCTTTS---TTTTHHHHHHHHHHHHSCC
T ss_pred             cCCCccccccCcccccccc---ccchhHHHHHHHHHHhCcc
Confidence            99999877654 2222211   111222 555666666666

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.67  E-value=4.5e-08  Score=70.85  Aligned_cols=69  Identities=14%  Similarity=0.091  Sum_probs=54.0

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-C----------CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEE-eCCcccCC---
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-C----------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFI-QGDFFALA---  125 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~----------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~---  125 (189)
                      ++++.+|||+|||+|.++..+++. +          .+|+|+|+++.+           .. .+++++ ++|+.+..   
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHH
Confidence            456889999999999999999987 4          789999999831           22 367888 88876532   


Q ss_pred             ------CCCCccEEEECCCCCC
Q psy13204        126 ------PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 ------~~~~~D~v~~npp~~~  141 (189)
                            +..+||+|++|++++.
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~  109 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNA  109 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCC
T ss_pred             HHHHhcCCCCCcEEEeCCCCCC
Confidence                  2357999999986654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.65  E-value=1.9e-08  Score=76.95  Aligned_cols=98  Identities=16%  Similarity=0.069  Sum_probs=68.2

Q ss_pred             CCEEEEecCCC--ChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---C----CCCcc
Q psy13204         64 SDVVIDGFCGC--GGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---P----SLQGD  131 (189)
Q Consensus        64 ~~~vlD~g~G~--G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~----~~~~D  131 (189)
                      ...|||+|||.  +..+..+++.   +.+|+++|.|+.|++.|+.++...+. .+++++++|+.+..   .    ...||
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~aD~~~~~~~l~~~~~~~~~D  157 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEADMLDPASILDAPELRDTLD  157 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEecccChhhhhcccccccccC
Confidence            46899999997  4455555543   68999999999999999988754332 47999999998752   1    13344


Q ss_pred             -----EEEECCCCCCCcccc----ccccccccCcCCCCchhH
Q psy13204        132 -----VVFLSPPWGGPEYAR----SSFSIDNIFPEQGGGRRL  164 (189)
Q Consensus       132 -----~v~~npp~~~~~~~~----~~~~~~~~l~~~~~g~~~  164 (189)
                           +|++|-.+|+.....    ....+.+.|++  ||+.+
T Consensus       158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P--GG~Lv  197 (277)
T 3giw_A          158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS--GSYLA  197 (277)
T ss_dssp             TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT--TCEEE
T ss_pred             cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC--CcEEE
Confidence                 688888888776543    23345566654  45533

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.61  E-value=8.2e-09  Score=80.51  Aligned_cols=75  Identities=21%  Similarity=0.327  Sum_probs=55.2

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeC----CHHHHHHHHHHHHHhCCCCceEEEeC-CcccCCCCCCccEEEE
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDI----DPAKLRLAQHNASVYGVSHKIQFIQG-DFFALAPSLQGDVVFL  135 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~----~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~D~v~~  135 (189)
                      ++++.+|||+|||+|.++..+++. .+|+|+|+    ++.+++.+.  ....+. ++++++++ |+.+. +..+||+|++
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l-~~~~fD~V~s  154 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFI-PPERCDTLLC  154 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTS-CCCCCSEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccC-CcCCCCEEEE
Confidence            455789999999999999999988 68999999    554332110  111111 36899999 88876 3468999999


Q ss_pred             CCCCC
Q psy13204        136 SPPWG  140 (189)
Q Consensus       136 npp~~  140 (189)
                      |.++.
T Consensus       155 d~~~~  159 (305)
T 2p41_A          155 DIGES  159 (305)
T ss_dssp             CCCCC
T ss_pred             CCccc
Confidence            98775

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.61  E-value=1.3e-08  Score=80.72  Aligned_cols=90  Identities=19%  Similarity=0.212  Sum_probs=62.8

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      .+.+|||+|||+|.++..+++.  +.+++++|+ +.++.  +.+....+..++++++.+|+.+..+  .||+|++.-.++
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p--~~D~v~~~~vlh  258 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREVP--HADVHVLKRILH  258 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCCC--CCSEEEEESCGG
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCCC--CCcEEEEehhcc
Confidence            3779999999999999999886  457899999 45554  3333334444579999999974445  899999977766


Q ss_pred             CCcccc---ccccccccCcC
Q psy13204        141 GPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       141 ~~~~~~---~~~~~~~~l~~  157 (189)
                      .....+   ....+.+.+++
T Consensus       259 ~~~d~~~~~~L~~~~~~Lkp  278 (348)
T 3lst_A          259 NWGDEDSVRILTNCRRVMPA  278 (348)
T ss_dssp             GSCHHHHHHHHHHHHHTCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCC
Confidence            543331   23345555543

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=98.61  E-value=1.5e-07  Score=74.04  Aligned_cols=72  Identities=22%  Similarity=0.298  Sum_probs=58.8

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC--e-E-EEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ--K-V-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~--~-v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~  135 (189)
                      .-+++|++||.|+++..+.++|.  + + .++|+++.+.+..+.|..      .. ++++|+.+..    +...+|++++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~------~~-~~~~DI~~~~~~~i~~~~~Dil~g   82 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK------EE-VQVKNLDSISIKQIESLNCNTWFM   82 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC------CC-CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC------CC-cccCChhhcCHHHhccCCCCEEEe
Confidence            45899999999999999999873  4 5 699999999999988863      22 5677887765    2226899999


Q ss_pred             CCCCCCC
Q psy13204        136 SPPWGGP  142 (189)
Q Consensus       136 npp~~~~  142 (189)
                      .|||+..
T Consensus        83 gpPCQ~f   89 (327)
T 3qv2_A           83 SPPCQPY   89 (327)
T ss_dssp             CCCCTTC
T ss_pred             cCCccCc
Confidence            9999987

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.61  E-value=1.2e-07  Score=72.19  Aligned_cols=61  Identities=20%  Similarity=0.359  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHh-CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCC
Q psy13204         50 PEKVAQHIASR-CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV  110 (189)
Q Consensus        50 ~~~~~~~~~~~-~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~  110 (189)
                      |..+.+.+... ..+++.|||++||+|..++++.+.|.+++|+|+++.+++.+++++..+++
T Consensus       198 p~~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          198 PRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            45566555444 45589999999999999999999999999999999999999999876653

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.50  E-value=1.9e-07  Score=79.46  Aligned_cols=74  Identities=14%  Similarity=0.073  Sum_probs=57.2

Q ss_pred             CCEEEEecCCCChHHHHH---HH-hC-----------CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--
Q psy13204         64 SDVVIDGFCGCGGNTIQF---AA-VC-----------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--  126 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~---~~-~~-----------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--  126 (189)
                      +.+|+|+|||+|-++..+   ++ ++           .+|+|||.|+.++..++.... ++..+.|+++.+|+.++..  
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            458999999999997543   22 12           289999999988866655544 7887789999999998853  


Q ss_pred             ----CCCccEEEECCC
Q psy13204        127 ----SLQGDVVFLSPP  138 (189)
Q Consensus       127 ----~~~~D~v~~npp  138 (189)
                          ..++|+||+-..
T Consensus       489 ~~~~~ekVDIIVSElm  504 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELL  504 (745)
T ss_dssp             HHTTCCCCSEEEECCC
T ss_pred             ccCCCCcccEEEEecc
Confidence                578999999544

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.47  E-value=2.4e-06  Score=65.97  Aligned_cols=80  Identities=13%  Similarity=0.087  Sum_probs=66.1

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh--C-C-CCceEEEeCCcccCC--CCCCcc
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--G-V-SHKIQFIQGDFFALA--PSLQGD  131 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~-~-~~~~~~~~~d~~~~~--~~~~~D  131 (189)
                      ..+..++||=+|.|.|+.+.++.+.  ..+|+.+|+++..++.+++.+...  + . ..+++++.+|+.++.  ...+||
T Consensus        80 ~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yD  159 (294)
T 3o4f_A           80 AHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFD  159 (294)
T ss_dssp             HSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred             hCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCC
Confidence            3455889999999999999999887  568999999999999999876432  1 1 247999999999987  446899


Q ss_pred             EEEECCCC
Q psy13204        132 VVFLSPPW  139 (189)
Q Consensus       132 ~v~~npp~  139 (189)
                      +|+.|.+-
T Consensus       160 vIi~D~~d  167 (294)
T 3o4f_A          160 VIISDCTD  167 (294)
T ss_dssp             EEEESCCC
T ss_pred             EEEEeCCC
Confidence            99999754

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=98.41  E-value=2.5e-06  Score=74.48  Aligned_cols=42  Identities=17%  Similarity=0.337  Sum_probs=36.1

Q ss_pred             CCEEEEecCCCChHHHHHHHhC------C-eEEEEeCCHHHHHHHHHHH
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVC------Q-KVISIDIDPAKLRLAQHNA  105 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~------~-~v~~vD~~~~~~~~a~~~~  105 (189)
                      .-+|||++||.|+++.-+.++|      . .+.++|+++.+++..+.|.
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            3589999999999999998876      3 4578999999999988885

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.41  E-value=9.5e-08  Score=76.32  Aligned_cols=68  Identities=21%  Similarity=0.297  Sum_probs=55.2

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      ..+|+|+|||+|.++..+++.  +.+++++|+ +.+++.++++       .+++++.+|+.+..+. . |+|++.-..+.
T Consensus       204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p~-~-D~v~~~~vlh~  273 (368)
T 3reo_A          204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDGVPK-G-DAIFIKWICHD  273 (368)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCC-C-SEEEEESCGGG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCCCCC-C-CEEEEechhhc
Confidence            679999999999999999886  568999999 8888776532       4799999999874443 2 99999766654

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.40  E-value=1.2e-06  Score=69.49  Aligned_cols=74  Identities=18%  Similarity=0.079  Sum_probs=58.4

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-CCCccEEEECCC
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPP  138 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~npp  138 (189)
                      .+++|.+++|+||+.|+++..++++|.+|+|||+.+ +-..    +.  .. .+++++++|+....+ ...+|+|++|.-
T Consensus       208 ~l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~~----l~--~~-~~V~~~~~d~~~~~~~~~~~D~vvsDm~  279 (375)
T 4auk_A          208 RLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQS----LM--DT-GQVTWLREDGFKFRPTRSNISWMVCDMV  279 (375)
T ss_dssp             HSCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCHH----HH--TT-TCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred             cCCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cChh----hc--cC-CCeEEEeCccccccCCCCCcCEEEEcCC
Confidence            466799999999999999999999999999999764 1111    11  11 479999999998864 457999999976


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      ...
T Consensus       280 ~~p  282 (375)
T 4auk_A          280 EKP  282 (375)
T ss_dssp             SCH
T ss_pred             CCh
Confidence            654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.38  E-value=7.4e-08  Score=76.98  Aligned_cols=70  Identities=26%  Similarity=0.345  Sum_probs=56.2

Q ss_pred             CCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      .+.+|||+|||+|.++..+++..  .+++++|+ +.+++.|++      . .+++++.+|+.+..+.  +|+|++.-..+
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~~~~--~D~v~~~~~lh  278 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFASVPQ--GDAMILKAVCH  278 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTTCCCC--EEEEEEESSGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCcccCCCC--CCEEEEecccc
Confidence            37899999999999999999874  57888999 999887654      2 3699999999874343  99999976665


Q ss_pred             CC
Q psy13204        141 GP  142 (189)
Q Consensus       141 ~~  142 (189)
                      ..
T Consensus       279 ~~  280 (372)
T 1fp1_D          279 NW  280 (372)
T ss_dssp             GS
T ss_pred             cC
Confidence            43

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.36  E-value=6.7e-07  Score=69.11  Aligned_cols=64  Identities=14%  Similarity=0.053  Sum_probs=48.1

Q ss_pred             CCCCCEEEEecCCC------ChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEE-EeCCcccCCCCCCc
Q psy13204         61 CKASDVVIDGFCGC------GGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQF-IQGDFFALAPSLQG  130 (189)
Q Consensus        61 ~~~~~~vlD~g~G~------G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~  130 (189)
                      ++++.+|||+|||+      |.  ..+++.   +.+|+|+|+++.             + .++++ +++|+.+.....+|
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~~~~~f  124 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVHTANKW  124 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCCCSSCE
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCCccCcc
Confidence            34588999999955      66  333433   478999999997             1 36788 99999887544689


Q ss_pred             cEEEECCCCC
Q psy13204        131 DVVFLSPPWG  140 (189)
Q Consensus       131 D~v~~npp~~  140 (189)
                      |+|++|++..
T Consensus       125 D~Vvsn~~~~  134 (290)
T 2xyq_A          125 DLIISDMYDP  134 (290)
T ss_dssp             EEEEECCCCC
T ss_pred             cEEEEcCCcc
Confidence            9999997543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=98.34  E-value=1.5e-06  Score=71.64  Aligned_cols=79  Identities=19%  Similarity=0.185  Sum_probs=59.4

Q ss_pred             CEEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-----------------
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------------  126 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------------  126 (189)
                      -+++|++||.|+++..+.++|.+ |.++|+++.+.+..+.|....   ....++++|+.+...                 
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~  165 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD---PATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ  165 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC---TTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC---CCcceeccchhhhhhccccccchhhHHhhhhh
Confidence            48999999999999999999887 578999999998887775211   234567788776531                 


Q ss_pred             -CCCccEEEECCCCCCCcccc
Q psy13204        127 -SLQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       127 -~~~~D~v~~npp~~~~~~~~  146 (189)
                       ...+|+++..|||+..+...
T Consensus       166 ~~~~~Dvl~gGpPCQ~FS~AG  186 (482)
T 3me5_A          166 HIPEHDVLLAGFPCQPFSLAG  186 (482)
T ss_dssp             HSCCCSEEEEECCCCCC----
T ss_pred             cCCCCCEEEecCCCcchhhhC
Confidence             13589999999999977655

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.33  E-value=3.7e-07  Score=72.78  Aligned_cols=69  Identities=22%  Similarity=0.298  Sum_probs=55.0

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ...+|+|+|||+|.++..+++.  +.+++++|+ +.+++.|++.       .+++++.+|+.+..+. . |+|++.-..+
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~v~~~~vlh  270 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFKEVPS-G-DTILMKWILH  270 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCC-C-SEEEEESCGG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCCCCCC-C-CEEEehHHhc
Confidence            3689999999999999999886  568999999 8888776532       4899999999874343 3 9999865555


Q ss_pred             C
Q psy13204        141 G  141 (189)
Q Consensus       141 ~  141 (189)
                      .
T Consensus       271 ~  271 (364)
T 3p9c_A          271 D  271 (364)
T ss_dssp             G
T ss_pred             c
Confidence            3

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.32  E-value=4e-06  Score=66.50  Aligned_cols=74  Identities=23%  Similarity=0.284  Sum_probs=58.6

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ..+|+|+|||+|.++..++++  ..+++..|. |.+++.|+++....+ .++++++.+|+++.. ...+|++++.--.+
T Consensus       180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~-~~~~D~~~~~~vlh  255 (353)
T 4a6d_A          180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDP-LPEADLYILARVLH  255 (353)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSC-CCCCSEEEEESSGG
T ss_pred             CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCC-CCCceEEEeeeecc
Confidence            679999999999999999988  556788887 889999988876544 368999999998753 34679999844443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.31  E-value=8.3e-07  Score=70.31  Aligned_cols=70  Identities=20%  Similarity=0.302  Sum_probs=57.0

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  139 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~  139 (189)
                      +.+.+|||+|||+|.++..+++.  +.+++++|+ +.+++.|++      . .+++++.+|+.+..+  .||+|++.-..
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~~p--~~D~v~~~~~l  256 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFTSIP--NADAVLLKYIL  256 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTTCCC--CCSEEEEESCG
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-CCcEEEeccccCCCC--CccEEEeehhh
Confidence            44789999999999999999887  568999999 999987764      1 369999999977434  39999997666


Q ss_pred             CC
Q psy13204        140 GG  141 (189)
Q Consensus       140 ~~  141 (189)
                      +.
T Consensus       257 h~  258 (352)
T 1fp2_A          257 HN  258 (352)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=98.22  E-value=9.8e-06  Score=64.19  Aligned_cols=87  Identities=11%  Similarity=0.083  Sum_probs=65.5

Q ss_pred             HHHHHHHHhCC--------CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc
Q psy13204         52 KVAQHIASRCK--------ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF  121 (189)
Q Consensus        52 ~~~~~~~~~~~--------~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~  121 (189)
                      .+.+.+++.+.        .+..|||+|.|.|.++..+...  +.+|+++|+++..+...++.. .  . ++++++++|+
T Consensus        39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~-~~l~ii~~D~  114 (353)
T 1i4w_A           39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--G-SPLQILKRDP  114 (353)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--T-SSCEEECSCT
T ss_pred             HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--C-CCEEEEECCc
Confidence            35555555443        2489999999999999999986  679999999999998887765 2  2 5899999999


Q ss_pred             ccCC------CCCC-----------c---cEEEECCCCCCC
Q psy13204        122 FALA------PSLQ-----------G---DVVFLSPPWGGP  142 (189)
Q Consensus       122 ~~~~------~~~~-----------~---D~v~~npp~~~~  142 (189)
                      +++.      ....           +   =.|+.|.||...
T Consensus       115 l~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIs  155 (353)
T 1i4w_A          115 YDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGS  155 (353)
T ss_dssp             TCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTH
T ss_pred             cchhhHHHhhcccccccccccccccCCCceEEEEECCCchH
Confidence            7652      1110           1   179999999764

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=98.21  E-value=4e-07  Score=71.46  Aligned_cols=74  Identities=16%  Similarity=0.227  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHh-CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204         50 PEKVAQHIASR-CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA  125 (189)
Q Consensus        50 ~~~~~~~~~~~-~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  125 (189)
                      |..+.+.+... ..+++.|||++||+|+.+.++.+.|.+.+|+|+++..++.+++++...+.  ....++.|+.+..
T Consensus       238 p~~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~--~~~~~~~~~~~i~  312 (323)
T 1boo_A          238 PAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNI--SEEKITDIYNRIL  312 (323)
T ss_dssp             CTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCS--CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhccc--chHHHHHHHHHHH
Confidence            34455555443 45699999999999999999999999999999999999999988876554  3444555555443

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.14  E-value=8.2e-06  Score=63.85  Aligned_cols=77  Identities=25%  Similarity=0.414  Sum_probs=61.9

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---C--C--CCcc
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---P--S--LQGD  131 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~--~--~~~D  131 (189)
                      +++..++|.+||.|+.+..+++.   ..+|+|+|.++.+++.++ ++  .  ..++++++++..++.   +  +  .++|
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~--~~Rv~lv~~nF~~l~~~L~~~g~~~~vD  130 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D--DPRFSIIHGPFSALGEYVAERDLIGKID  130 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C--CTTEEEEESCGGGHHHHHHHTTCTTCEE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c--CCcEEEEeCCHHHHHHHHHhcCCCCccc
Confidence            45889999999999999999876   468999999999999884 33  2  258999999988764   1  1  2699


Q ss_pred             EEEECCCCCCCc
Q psy13204        132 VVFLSPPWGGPE  143 (189)
Q Consensus       132 ~v~~npp~~~~~  143 (189)
                      .|++|..+.-+.
T Consensus       131 gILfDLGVSS~Q  142 (347)
T 3tka_A          131 GILLDLGVSSPQ  142 (347)
T ss_dssp             EEEEECSCCHHH
T ss_pred             EEEECCccCHHH
Confidence            999998887543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.14  E-value=3.1e-06  Score=67.16  Aligned_cols=69  Identities=23%  Similarity=0.310  Sum_probs=55.9

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      .+.+|+|+|||+|.++..+++.  +.+++++|+ +.+++.+++      . .+++++.+|+.+..+  .||+|++.-.++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~~~--~~D~v~~~~vlh  262 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFKSIP--SADAVLLKWVLH  262 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTTCCC--CCSEEEEESCGG
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCCCCC--CceEEEEccccc
Confidence            4689999999999999999987  457999999 788876653      2 369999999987323  599999977766


Q ss_pred             C
Q psy13204        141 G  141 (189)
Q Consensus       141 ~  141 (189)
                      .
T Consensus       263 ~  263 (358)
T 1zg3_A          263 D  263 (358)
T ss_dssp             G
T ss_pred             C
Confidence            4

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=98.11  E-value=3e-05  Score=62.55  Aligned_cols=82  Identities=11%  Similarity=-0.057  Sum_probs=59.1

Q ss_pred             CEEEEecCCCChHHHHHHHhCC---e----EEEEeCCHHHHHHHHHHHHHhCCC--Cc----------------------
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVCQ---K----VISIDIDPAKLRLAQHNASVYGVS--HK----------------------  113 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~~---~----v~~vD~~~~~~~~a~~~~~~~~~~--~~----------------------  113 (189)
                      -+|+|++||.|+++..+.+.|.   -    |.++|+++.+.+..+.|.....-.  ..                      
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~i~   90 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYGIK   90 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHHHH
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccccc
Confidence            4899999999999999988862   2    678999999999988887532100  00                      


Q ss_pred             ------e-E---------EEeCCcccCCCC---CCccEEEECCCCCCCcccc
Q psy13204        114 ------I-Q---------FIQGDFFALAPS---LQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       114 ------~-~---------~~~~d~~~~~~~---~~~D~v~~npp~~~~~~~~  146 (189)
                            . .         ...+|+.+....   ..+|+++..|||+..+...
T Consensus        91 ~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip~~vDll~ggpPCQ~fS~ag  142 (403)
T 4dkj_A           91 KINNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQG  142 (403)
T ss_dssp             HHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSCSSCSEEEECCCCTTTCTTS
T ss_pred             cccHHHHHHHHhhcccCCCcccchhhcCHhhCCCCCcEEEEeCCCCCHHHhC
Confidence                  0 0         034777766421   2479999999999977665

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=98.07  E-value=1.9e-05  Score=70.19  Aligned_cols=108  Identities=15%  Similarity=0.101  Sum_probs=71.0

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-e-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC-----------------
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-K-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----------------  124 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----------------  124 (189)
                      .-+++|++||.|+++..+.++|. + +.++|+++.+.+..+.|..      ...++.+|+.++                 
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~~di~~~~~~~l  613 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDCNILLKLVMAGETTNSRGQRL  613 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCccccccHHHHhhhccchhhhhhhhhhc
Confidence            44899999999999999999996 4 6799999999988877753      445666664221                 


Q ss_pred             CCCCCccEEEECCCCCCCccccccccccccCcCCCCch-hHHHHhhhcCCceEEE
Q psy13204        125 APSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGR-RLFQVARGISPNVGYY  178 (189)
Q Consensus       125 ~~~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~  178 (189)
                      +....+|+++..|||++.+....... ...-..++..+ .++.....+.|..+++
T Consensus       614 p~~~~vDll~GGpPCQ~FS~ag~~~~-~~~~d~R~~L~~~~~riv~~~rPk~~ll  667 (1002)
T 3swr_A          614 PQKGDVEMLCGGPPCQGFSGMNRFNS-RTYSKFKNSLVVSFLSYCDYYRPRFFLL  667 (1002)
T ss_dssp             CCTTTCSEEEECCCCTTCCSSSCCCH-HHHHHHTTSHHHHHHHHHHHHCCSEEEE
T ss_pred             ccCCCeeEEEEcCCCcchhhhCCCCC-CcccchhhHHHHHHHHHHHHhCCCEEEE
Confidence            12246899999999998775542100 00000111122 5556666666765543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=98.02  E-value=1.3e-05  Score=62.69  Aligned_cols=61  Identities=18%  Similarity=0.206  Sum_probs=48.5

Q ss_pred             ChHHHHHHHHHh-CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCH---HHHHHHHHHHHHhC
Q psy13204         49 TPEKVAQHIASR-CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP---AKLRLAQHNASVYG  109 (189)
Q Consensus        49 ~~~~~~~~~~~~-~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~---~~~~~a~~~~~~~~  109 (189)
                      -|..+.+.+... ..+++.|||++||+|+.+.++.+.|.+.+|+|+++   ..++.+++++...+
T Consensus       227 kp~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          227 KPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            445566655544 45599999999999999999999999999999999   99999998876554

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.98  E-value=5.3e-07  Score=64.19  Aligned_cols=84  Identities=12%  Similarity=0.021  Sum_probs=59.5

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEEC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLS  136 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~n  136 (189)
                      +++|.+|||+|||.              +++|+++.|++.|+++..     .++++.++|+.+..    +..+||+|+++
T Consensus        10 ~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~V~~~   70 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFDIILSG   70 (176)
T ss_dssp             CCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEeEEEEC
Confidence            55689999999996              239999999999988753     24789999988764    35689999997


Q ss_pred             CCCCCC-cccc-ccccccccCcCCCCchhHH
Q psy13204        137 PPWGGP-EYAR-SSFSIDNIFPEQGGGRRLF  165 (189)
Q Consensus       137 pp~~~~-~~~~-~~~~~~~~l~~~~~g~~~~  165 (189)
                      -.+++. .... ....+.++|++  ||..++
T Consensus        71 ~~l~~~~~~~~~~l~~~~r~Lkp--gG~l~~   99 (176)
T 2ld4_A           71 LVPGSTTLHSAEILAEIARILRP--GGCLFL   99 (176)
T ss_dssp             CSTTCCCCCCHHHHHHHHHHEEE--EEEEEE
T ss_pred             ChhhhcccCHHHHHHHHHHHCCC--CEEEEE
Confidence            777764 2222 33445566644  355333

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.90  E-value=7.5e-05  Score=57.36  Aligned_cols=75  Identities=16%  Similarity=0.139  Sum_probs=61.0

Q ss_pred             CCEEEEecCCCChHHHHHHHh-------CCeEEEEeCCH--------------------------HHHHHHHHHHHHhCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-------CQKVISIDIDP--------------------------AKLRLAQHNASVYGV  110 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-------~~~v~~vD~~~--------------------------~~~~~a~~~~~~~~~  110 (189)
                      ...|+|+|+..|..++.++..       +.+++++|..+                          ..++.+++|+...|+
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            679999999999999888653       56899999532                          146778999999998


Q ss_pred             C-CceEEEeCCcccCCC---CCCccEEEECCC
Q psy13204        111 S-HKIQFIQGDFFALAP---SLQGDVVFLSPP  138 (189)
Q Consensus       111 ~-~~~~~~~~d~~~~~~---~~~~D~v~~npp  138 (189)
                      . ++++++.+|+.+.++   ..++|+|++|--
T Consensus       187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD  218 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD  218 (282)
T ss_dssp             CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC
T ss_pred             CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC
Confidence            4 789999999988763   357999999853

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=97.85  E-value=6.6e-05  Score=68.41  Aligned_cols=77  Identities=18%  Similarity=0.216  Sum_probs=58.7

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-e-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC-----------------
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-K-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----------------  124 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----------------  124 (189)
                      .-+++|++||.|+++..+.++|. + +.++|+++.+.+..+.|..      ...+.++|+.+.                 
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~gdi~~~~~~~l  924 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP------GTTVFTEDCNVLLKLVMAGEVTNSLGQRL  924 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT------TSEEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCcEeeccHHHHhHhhhccchhhhhhhhc
Confidence            45799999999999999999986 4 6799999999998887753      344555554311                 


Q ss_pred             CCCCCccEEEECCCCCCCcccc
Q psy13204        125 APSLQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       125 ~~~~~~D~v~~npp~~~~~~~~  146 (189)
                      .....+|+++..|||++.+...
T Consensus       925 p~~~~vDvl~GGpPCQ~FS~ag  946 (1330)
T 3av4_A          925 PQKGDVEMLCGGPPCQGFSGMN  946 (1330)
T ss_dssp             CCTTTCSEEEECCCCTTTCSSS
T ss_pred             cccCccceEEecCCCccccccc
Confidence            1123689999999999977554

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.76  E-value=4.1e-05  Score=58.09  Aligned_cols=74  Identities=23%  Similarity=0.209  Sum_probs=52.0

Q ss_pred             CCEEEEecCCCChHHHHHHHh-------C-------CeEEEEeCCH---HHHH-----------HHHHHHHHh-------
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-------C-------QKVISIDIDP---AKLR-----------LAQHNASVY-------  108 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-------~-------~~v~~vD~~~---~~~~-----------~a~~~~~~~-------  108 (189)
                      +.+|+|+|+|+|..++.+++.       .       .+++++|..|   +.+.           .|+.++...       
T Consensus        61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~  140 (257)
T 2qy6_A           61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  140 (257)
T ss_dssp             EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence            579999999999988886543       2       3789999876   4444           455555431       


Q ss_pred             ---CC---CCceEEEeCCcccCCCC------CCccEEEECC
Q psy13204        109 ---GV---SHKIQFIQGDFFALAPS------LQGDVVFLSP  137 (189)
Q Consensus       109 ---~~---~~~~~~~~~d~~~~~~~------~~~D~v~~np  137 (189)
                         .+   ..+++++.+|+.+.++.      ..||+|+.|+
T Consensus       141 ~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~  181 (257)
T 2qy6_A          141 HRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG  181 (257)
T ss_dssp             EEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS
T ss_pred             hheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC
Confidence               01   13678999999885422      2799999996

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.66  E-value=4.9e-05  Score=60.53  Aligned_cols=75  Identities=15%  Similarity=0.069  Sum_probs=60.2

Q ss_pred             CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHh--C-C----CCceEEEeCCcccCC-----CCCCc
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY--G-V----SHKIQFIQGDFFALA-----PSLQG  130 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~--~-~----~~~~~~~~~d~~~~~-----~~~~~  130 (189)
                      +++||=+|.|.|+.+.++.+. ..+|+.||+++..++.|++.+...  + .    .++++++.+|+.++.     ...+|
T Consensus       206 pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~y  285 (381)
T 3c6k_A          206 GKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREF  285 (381)
T ss_dssp             TCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCE
T ss_pred             CCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCce
Confidence            789999999999999999886 567999999999999999875321  1 1    124799999998876     24579


Q ss_pred             cEEEECCC
Q psy13204        131 DVVFLSPP  138 (189)
Q Consensus       131 D~v~~npp  138 (189)
                      |+|+.|.+
T Consensus       286 DvIIvDl~  293 (381)
T 3c6k_A          286 DYVINDLT  293 (381)
T ss_dssp             EEEEEECC
T ss_pred             eEEEECCC
Confidence            99999954

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.49  E-value=8.7e-05  Score=55.11  Aligned_cols=75  Identities=24%  Similarity=0.286  Sum_probs=51.6

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC-CcccCCCCCCccEEEEC
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-DFFALAPSLQGDVVFLS  136 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~D~v~~n  136 (189)
                      .++++..|+|+||+.|+++..++.. +. +|+|+|+-+.-.+.-+ .....|- +.+++..+ |.....+ ..+|+|+||
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gw-n~v~fk~gvDv~~~~~-~~~DtllcD  151 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGW-NIVKLMSGKDVFYLPP-EKCDTLLCD  151 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTT-TSEEEECSCCGGGCCC-CCCSEEEEC
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCc-CceEEEeccceeecCC-ccccEEEEe
Confidence            3455889999999999999988765 44 6999998763221000 0011222 46899999 8765544 779999998


Q ss_pred             C
Q psy13204        137 P  137 (189)
Q Consensus       137 p  137 (189)
                      .
T Consensus       152 I  152 (267)
T 3p8z_A          152 I  152 (267)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.40  E-value=0.00012  Score=56.11  Aligned_cols=75  Identities=21%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC-CcccCCCCCCccEEEECC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-DFFALAPSLQGDVVFLSP  137 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~D~v~~np  137 (189)
                      ++++..|+|+||++|+++..++.. +. .|+|+|+-..-.+.-+ .....+- .-+.+..+ |+....+ ..+|+|+||.
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w-~lV~~~~~~Dv~~l~~-~~~D~ivcDi  168 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGW-NIVTMKSGVDVFYRPS-ECCDTLLCDI  168 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTG-GGEEEECSCCTTSSCC-CCCSEEEECC
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCC-cceEEEeccCHhhCCC-CCCCEEEEEC
Confidence            455789999999999999988765 44 5999998764110000 0000110 23778877 7766544 6799999997


Q ss_pred             C
Q psy13204        138 P  138 (189)
Q Consensus       138 p  138 (189)
                      -
T Consensus       169 g  169 (321)
T 3lkz_A          169 G  169 (321)
T ss_dssp             C
T ss_pred             c
Confidence            6

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.36  E-value=0.00085  Score=54.19  Aligned_cols=61  Identities=15%  Similarity=0.035  Sum_probs=48.8

Q ss_pred             CCCCEEEEecCCCChHHHHHH-HhC---CeEEEEeCCHHHHHHHHHHHHH--hCCC-CceEEEeCCcc
Q psy13204         62 KASDVVIDGFCGCGGNTIQFA-AVC---QKVISIDIDPAKLRLAQHNASV--YGVS-HKIQFIQGDFF  122 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~-~~~---~~v~~vD~~~~~~~~a~~~~~~--~~~~-~~~~~~~~d~~  122 (189)
                      +++.+|+|+||+.|.++..++ +.+   .+|+++|.+|..++.+++|+..  ++.. .++++++.-+.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            558899999999999999988 443   6899999999999999999987  3332 46776655443

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.22  E-value=8.1e-05  Score=56.70  Aligned_cols=76  Identities=20%  Similarity=0.316  Sum_probs=46.6

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC--CcccCCCCCCccEEEEC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG--DFFALAPSLQGDVVFLS  136 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~D~v~~n  136 (189)
                      ++++.+|||+|||.|+++..+++. + ..|.|+|+...+...+... ...+  .++.....  |...+ +...+|+|++|
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~~l-~~~~~DvVLSD  163 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVFNM-EVIPGDTLLCD  163 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGGGS-CCCCCSEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchhhc-CCCCcCEEEec
Confidence            455789999999999999998864 3 3588999876432111100 0011  13333332  44333 55789999999


Q ss_pred             CCCC
Q psy13204        137 PPWG  140 (189)
Q Consensus       137 pp~~  140 (189)
                      .--.
T Consensus       164 mApn  167 (282)
T 3gcz_A          164 IGES  167 (282)
T ss_dssp             CCCC
T ss_pred             CccC
Confidence            5444

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.21  E-value=5.9e-05  Score=57.34  Aligned_cols=77  Identities=18%  Similarity=0.078  Sum_probs=46.2

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC-CCCCCccEEEECC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-APSLQGDVVFLSP  137 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~np  137 (189)
                      ++++.+|||+|||.|+++..+++. + ..+.|+|+...+....... ...+.  ++....+++... .+...+|+|++|-
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~--~ii~~~~~~dv~~l~~~~~DlVlsD~  148 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW--NIITFKDKTDIHRLEPVKCDTLLCDI  148 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG--GGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC--CeEEEeccceehhcCCCCccEEEecC
Confidence            455789999999999999988865 3 3577888764321000000 00011  444455543222 2556899999996


Q ss_pred             CCC
Q psy13204        138 PWG  140 (189)
Q Consensus       138 p~~  140 (189)
                      .-+
T Consensus       149 apn  151 (277)
T 3evf_A          149 GES  151 (277)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            444

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.19  E-value=6.4e-05  Score=56.51  Aligned_cols=72  Identities=22%  Similarity=0.210  Sum_probs=45.1

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCc---eEEEeC-CcccCCCCCCccEE
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHK---IQFIQG-DFFALAPSLQGDVV  133 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~---~~~~~~-d~~~~~~~~~~D~v  133 (189)
                      .++++.+|+|+||+.|+++..+++.  ...|.|..+.... ..    .+.......   +++.++ |+.+. ....+|+|
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~----~P~~~~~~Gv~~i~~~~G~Df~~~-~~~~~DvV  143 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HE----EPMLMQSYGWNIVTMKSGVDVFYK-PSEISDTL  143 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SC----CCCCCCSTTGGGEEEECSCCGGGS-CCCCCSEE
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-cc----CCCcccCCCceEEEeeccCCccCC-CCCCCCEE
Confidence            5677999999999999999999887  3333444433220 00    000000012   355557 98875 34679999


Q ss_pred             EECC
Q psy13204        134 FLSP  137 (189)
Q Consensus       134 ~~np  137 (189)
                      ++|.
T Consensus       144 LSDM  147 (269)
T 2px2_A          144 LCDI  147 (269)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9994

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.11  E-value=0.057  Score=43.12  Aligned_cols=79  Identities=15%  Similarity=-0.035  Sum_probs=50.7

Q ss_pred             CCEEEEecCCCChHHHHHHHh-------------------CCeEEEEeCC-----------HHHHHHHHHHHHHhCCCCc
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-------------------CQKVISIDID-----------PAKLRLAQHNASVYGVSHK  113 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-------------------~~~v~~vD~~-----------~~~~~~a~~~~~~~~~~~~  113 (189)
                      .-+|+|+||++|..++.+...                   ..+|+..|+-           +...+.++   +..|...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence            467899999999999888654                   1256778875           33333221   11221113


Q ss_pred             eEEEeCCcccC---C-CCCCccEEEECCCCCCCccc
Q psy13204        114 IQFIQGDFFAL---A-PSLQGDVVFLSPPWGGPEYA  145 (189)
Q Consensus       114 ~~~~~~d~~~~---~-~~~~~D~v~~npp~~~~~~~  145 (189)
                      ..++.+....+   + +..++|+|+++--.||++..
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~  165 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQV  165 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSS
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCC
Confidence            35555554443   2 78899999999999986643

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=95.14  E-value=0.021  Score=43.78  Aligned_cols=78  Identities=19%  Similarity=0.212  Sum_probs=46.3

Q ss_pred             HhCCCCCEEEEecCCCChHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC--CcccCCCCCCccEEE
Q psy13204         59 SRCKASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG--DFFALAPSLQGDVVF  134 (189)
Q Consensus        59 ~~~~~~~~vlD~g~G~G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~D~v~  134 (189)
                      ..++++.+|||+||+.|+++..+++. + ..|.|+|+...+...... ....+  .++.....  |+..+ ....+|+|+
T Consensus        77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~--~~iv~~~~~~di~~l-~~~~~DlVl  152 (300)
T 3eld_A           77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG--WNIVKFKDKSNVFTM-PTEPSDTLL  152 (300)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT--GGGEEEECSCCTTTS-CCCCCSEEE
T ss_pred             CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC--CceEEeecCceeeec-CCCCcCEEe
Confidence            34556889999999999999999975 3 368899986532100000 00001  12222222  33332 456899999


Q ss_pred             ECCCCC
Q psy13204        135 LSPPWG  140 (189)
Q Consensus       135 ~npp~~  140 (189)
                      +|---.
T Consensus       153 sD~APn  158 (300)
T 3eld_A          153 CDIGES  158 (300)
T ss_dssp             ECCCCC
T ss_pred             ecCcCC
Confidence            984443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.74  E-value=0.076  Score=35.76  Aligned_cols=64  Identities=8%  Similarity=0.015  Sum_probs=42.4

Q ss_pred             CEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         65 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      .+|+=+|+  |.++..+++    .|.+|+++|.+++.++.++.    .    .+.++.+|..+..     .-..+|+++.
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence            45666666  555554443    48999999999998877653    2    4577888876532     2246888887


Q ss_pred             CCC
Q psy13204        136 SPP  138 (189)
Q Consensus       136 npp  138 (189)
                      ..|
T Consensus        78 ~~~   80 (140)
T 3fwz_A           78 TIP   80 (140)
T ss_dssp             CCS
T ss_pred             ECC
Confidence            444

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.74  E-value=0.11  Score=34.77  Aligned_cols=64  Identities=13%  Similarity=0.044  Sum_probs=43.5

Q ss_pred             CEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         65 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      .+++=+|+  |.++..+++    .|.+|+++|.+++.++.++.    .    ...++.+|..+..     ....+|+++.
T Consensus         7 ~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~----~~~~~~gd~~~~~~l~~~~~~~~d~vi~   76 (141)
T 3llv_A            7 YEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----E----GFDAVIADPTDESFYRSLDLEGVSAVLI   76 (141)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C----CCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence            45666776  455555544    48999999999988766543    2    3577888876532     2346899888


Q ss_pred             CCC
Q psy13204        136 SPP  138 (189)
Q Consensus       136 npp  138 (189)
                      ..|
T Consensus        77 ~~~   79 (141)
T 3llv_A           77 TGS   79 (141)
T ss_dssp             CCS
T ss_pred             ecC
Confidence            666

>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=94.57  E-value=0.031  Score=41.32  Aligned_cols=61  Identities=13%  Similarity=-0.068  Sum_probs=40.1

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-----CCCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~D~v~~npp  138 (189)
                      .-+++|++||.|+   .+.++|.++             +.|.      ....+.++|+.+...     ...+|+++..||
T Consensus        33 ~~~vidLFaGig~---Gl~~aGf~~-------------~~N~------~~~~~~~~DI~~i~~~~i~~~~~~DlliGG~P   90 (230)
T 2qrv_B           33 PVRVLSLFEDIKK---ELTSLGFLE-------------SGSD------PGQLKHVVDVTDTVRKDVEEWGPFDLVYGATP   90 (230)
T ss_dssp             CCCEEEESSCCTT---TTTTTTSCC------------------------CCEEEESCCTTCCHHHHHHTCCCSEEEEECC
T ss_pred             CceEEEeccChhH---HHHHCCCch-------------hhcC------CCCcEecCChhhCCHhHhcccCCCCEEEECCC
Confidence            4579999999886   244556554             1221      123467889888751     136899999999


Q ss_pred             CCCCcccc
Q psy13204        139 WGGPEYAR  146 (189)
Q Consensus       139 ~~~~~~~~  146 (189)
                      |+..+...
T Consensus        91 CQ~FS~ag   98 (230)
T 2qrv_B           91 PLGHTCDR   98 (230)
T ss_dssp             CTTTSSCS
T ss_pred             CCcccccC
Confidence            99866433

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=94.27  E-value=0.23  Score=37.27  Aligned_cols=73  Identities=18%  Similarity=0.128  Sum_probs=54.2

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      ++++|=-|++.|.   .+..+++.|++|+.+|.+++.++.+.+.+...+.  ++..+.+|..+..           .-..
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   84 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFETYSR   84 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            6777766765554   3444455699999999999999888888877764  7889999987743           1237


Q ss_pred             ccEEEECCC
Q psy13204        130 GDVVFLSPP  138 (189)
Q Consensus       130 ~D~v~~npp  138 (189)
                      .|+++.|.=
T Consensus        85 iDiLVNNAG   93 (254)
T 4fn4_A           85 IDVLCNNAG   93 (254)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCc
Confidence            899998864

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=94.10  E-value=0.28  Score=38.98  Aligned_cols=81  Identities=14%  Similarity=0.130  Sum_probs=46.1

Q ss_pred             CCEEEEecCCCChHHHHHHHh-----------------CCeEEEEeCCHHHHHHHHHHHHHh-----------CCCCceE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-----------------CQKVISIDIDPAKLRLAQHNASVY-----------GVSHKIQ  115 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-----------------~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~~  115 (189)
                      +.+|+|+|||+|..++.+...                 ..+|+..|+-..-....=..+...           +...+..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            468999999999999887332                 135667776543332221111110           0000112


Q ss_pred             EEe---CCcccCC-CCCCccEEEECCCCCCCcc
Q psy13204        116 FIQ---GDFFALA-PSLQGDVVFLSPPWGGPEY  144 (189)
Q Consensus       116 ~~~---~d~~~~~-~~~~~D~v~~npp~~~~~~  144 (189)
                      ++.   +.....+ +..++|+|+++--.|+++.
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~  165 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQ  165 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSS
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeecc
Confidence            222   2322222 7789999999999998663

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=94.08  E-value=0.043  Score=42.20  Aligned_cols=59  Identities=12%  Similarity=0.023  Sum_probs=41.6

Q ss_pred             CCEEEEecC------CCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEE
Q psy13204         64 SDVVIDGFC------GCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF  134 (189)
Q Consensus        64 ~~~vlD~g~------G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~  134 (189)
                      +.+|||+|+      -.|+.  .+++.   |+.|+++|+++-..           . .. .++++|..+......||+|+
T Consensus       110 gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------d-a~-~~IqGD~~~~~~~~k~DLVI  174 (344)
T 3r24_A          110 NMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------D-AD-STLIGDCATVHTANKWDLII  174 (344)
T ss_dssp             TCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------S-SS-EEEESCGGGEEESSCEEEEE
T ss_pred             CCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------C-CC-eEEEccccccccCCCCCEEE
Confidence            899999997      45663  33333   45899999987321           1 13 55999987665567899999


Q ss_pred             ECC
Q psy13204        135 LSP  137 (189)
Q Consensus       135 ~np  137 (189)
                      +|.
T Consensus       175 SDM  177 (344)
T 3r24_A          175 SDM  177 (344)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            983

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.05  E-value=0.021  Score=43.91  Aligned_cols=29  Identities=24%  Similarity=0.307  Sum_probs=24.5

Q ss_pred             ceEEEeCCcccCC---CCCCccEEEECCCCCC
Q psy13204        113 KIQFIQGDFFALA---PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       113 ~~~~~~~d~~~~~---~~~~~D~v~~npp~~~  141 (189)
                      .++++++|+.+.+   ++.+||+|++||||..
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~   52 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWT   52 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCC
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCC
Confidence            6789999998853   5578999999999975

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=93.69  E-value=0.28  Score=36.79  Aligned_cols=75  Identities=15%  Similarity=0.056  Sum_probs=54.0

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=-|++. +++...    ++.|++|+..|.+++.++.+.+.+...+.  ++..+.+|..+..           .-.
T Consensus         9 gKvalVTGas~-GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~G   85 (255)
T 4g81_D            9 GKTALVTGSAR-GLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAEGI   85 (255)
T ss_dssp             TCEEEETTCSS-HHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            66666666554 444444    45599999999999998887777776664  7888888987643           234


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        86 ~iDiLVNNAG~~~   98 (255)
T 4g81_D           86 HVDILINNAGIQY   98 (255)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCcEEEECCCCCC
Confidence            7899999875443

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.22  E-value=0.044  Score=42.65  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=25.1

Q ss_pred             CceEEEeCCcccCC---CCCCccEEEECCCCCCC
Q psy13204        112 HKIQFIQGDFFALA---PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       112 ~~~~~~~~d~~~~~---~~~~~D~v~~npp~~~~  142 (189)
                      ....++++|+.+.+   +..++|+|++||||...
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~   46 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQ   46 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSS
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCC
Confidence            36789999987643   56789999999999764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=92.89  E-value=0.031  Score=42.03  Aligned_cols=30  Identities=13%  Similarity=0.231  Sum_probs=23.6

Q ss_pred             ceEEEeCCcccCC---CCCCccEEEECCCCCCC
Q psy13204        113 KIQFIQGDFFALA---PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       113 ~~~~~~~d~~~~~---~~~~~D~v~~npp~~~~  142 (189)
                      ..+++++|+.+.+   +..++|+|++||||...
T Consensus         4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~   36 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLS   36 (260)
T ss_dssp             SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSC
T ss_pred             cCeEEechHHHHHHhccccccCEEEECCCCCCC
Confidence            4568899987654   55689999999999853

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.86  E-value=0.91  Score=33.73  Aligned_cols=72  Identities=15%  Similarity=0.017  Sum_probs=51.3

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      ++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+...+.  ++.++.+|+.+..           ....
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR--RALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            6677766655443   3334455599999999999888877777766553  7889999987643           1236


Q ss_pred             ccEEEECC
Q psy13204        130 GDVVFLSP  137 (189)
Q Consensus       130 ~D~v~~np  137 (189)
                      .|+++.|.
T Consensus        89 id~lv~nA   96 (264)
T 3ucx_A           89 VDVVINNA   96 (264)
T ss_dssp             CSEEEECC
T ss_pred             CcEEEECC
Confidence            89999986

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=92.64  E-value=0.16  Score=40.33  Aligned_cols=60  Identities=12%  Similarity=-0.134  Sum_probs=41.3

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-----CCCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~D~v~~npp  138 (189)
                      .-+|+|++||.|+   .+.++|.++                  .... ....++.+|+.+...     -..+|+++..||
T Consensus       189 ~ikvidLFaGiGg---Gl~~aGf~v------------------~~N~-~~~~~~~~DI~~i~~~~i~~~~~~DlliGG~P  246 (386)
T 2pv0_B          189 PVRVLSLFEDIKK---ELTSLGFLE------------------SGSD-PGQLKHVVDVTDTVRKDVEEWGPFDLVYGATP  246 (386)
T ss_dssp             CCCEEEESSCCHH---HHHHTTSSC------------------SSCC-SCSEEEESCCTTCCHHHHHHSCCCSEEEEECC
T ss_pred             CceeeEEeccCCh---hHhhcCccH------------------HHcC-CCCcEEeCChhhCCHhHhcccCCCCEEEECCC
Confidence            4579999999995   455667664                  1111 123567889887751     236899999999


Q ss_pred             CCCCccc
Q psy13204        139 WGGPEYA  145 (189)
Q Consensus       139 ~~~~~~~  145 (189)
                      ++..+..
T Consensus       247 CQ~FS~A  253 (386)
T 2pv0_B          247 PLGHTCD  253 (386)
T ss_dssp             CTTTCSC
T ss_pred             CCccccc
Confidence            9986544

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=92.43  E-value=0.04  Score=43.60  Aligned_cols=81  Identities=14%  Similarity=0.109  Sum_probs=52.2

Q ss_pred             CCEEEEecCCCChHHHHHHHh------------C------CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC---Ccc
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV------------C------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG---DFF  122 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~------------~------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~  122 (189)
                      .-+|+|+||++|..++.+...            +      .+|+..|+-......+-+.+....-..+..++.+   .+.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            346899999999988766443            1      3678899877666665444432110002244444   333


Q ss_pred             cCC-CCCCccEEEECCCCCCCcc
Q psy13204        123 ALA-PSLQGDVVFLSPPWGGPEY  144 (189)
Q Consensus       123 ~~~-~~~~~D~v~~npp~~~~~~  144 (189)
                      ..+ +..++|+++++--.||++.
T Consensus       132 ~rlfp~~S~d~v~Ss~aLHWls~  154 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYSLMWLSQ  154 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSS
T ss_pred             hccCCCCceEEEEehhhhhhccc
Confidence            333 7889999999999988664

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=92.21  E-value=0.74  Score=35.06  Aligned_cols=75  Identities=17%  Similarity=0.045  Sum_probs=53.6

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|++ |+++..++    +.|++|+.++.+++.++.+.+.+...+.  ++.++.+|+.+..           ...
T Consensus        31 gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           31 GRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF--DAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            6677655555 55555554    4599999999999988887777766554  7889999987743           013


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus       108 ~id~lvnnAg~~~  120 (301)
T 3tjr_A          108 GVDVVFSNAGIVV  120 (301)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             CCCEEEECCCcCC
Confidence            6899999876543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=92.20  E-value=0.4  Score=36.33  Aligned_cols=78  Identities=22%  Similarity=0.161  Sum_probs=51.4

Q ss_pred             HHHhCCCCCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--------
Q psy13204         57 IASRCKASDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--------  125 (189)
Q Consensus        57 ~~~~~~~~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------  125 (189)
                      |..+++ ++++|=-|++.|.   .+..+++.|++|+..+.+++.++.+.+.+   +  .++..+.+|..+..        
T Consensus        23 Ms~rL~-gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~   96 (273)
T 4fgs_A           23 MTQRLN-AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEK   96 (273)
T ss_dssp             --CTTT-TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHH
T ss_pred             hcchhC-CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHH
Confidence            334455 7777777766553   34444556999999999998877654443   3  36778888887643        


Q ss_pred             ---CCCCccEEEECCCCC
Q psy13204        126 ---PSLQGDVVFLSPPWG  140 (189)
Q Consensus       126 ---~~~~~D~v~~npp~~  140 (189)
                         .-...|+++.|.-..
T Consensus        97 ~~~~~G~iDiLVNNAG~~  114 (273)
T 4fgs_A           97 VKAEAGRIDVLFVNAGGG  114 (273)
T ss_dssp             HHHHHSCEEEEEECCCCC
T ss_pred             HHHHcCCCCEEEECCCCC
Confidence               123689999986443

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=92.08  E-value=1.6  Score=31.84  Aligned_cols=74  Identities=12%  Similarity=0.053  Sum_probs=52.4

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++..+.....+...+.  ++.++.+|..+..           ...
T Consensus         5 ~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            5 EKVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF--KARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45555444 55666555544    599999999999888877777666654  7889999987642           223


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        82 ~id~li~~Ag~~   93 (247)
T 3lyl_A           82 AIDILVNNAGIT   93 (247)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999987554

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=91.83  E-value=1.2  Score=34.27  Aligned_cols=76  Identities=13%  Similarity=-0.020  Sum_probs=53.0

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++||=.|++ |+++..++    +.|++|++++.+++..+.+...+...+...++.++..|+.+..           ...
T Consensus         8 ~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            8 GRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            5666655554 55555554    4599999999999988887777665554237888999987642           123


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .+|+++.|.-..
T Consensus        87 ~id~lv~nAg~~   98 (319)
T 3ioy_A           87 PVSILCNNAGVN   98 (319)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CCCEEEECCCcC
Confidence            689999987544

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=91.81  E-value=0.89  Score=33.38  Aligned_cols=73  Identities=15%  Similarity=0.004  Sum_probs=51.7

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..++    +.|++|+.++.+++..+.+.+.+...+.  ++.++.+|+.+..           ...
T Consensus         9 ~k~vlITG-as~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T 3qiv_A            9 NKVGIVTG-SGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGG--TAISVAVDVSDPESAKAMADRTLAEFG   85 (253)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            56666555 4555555554    4599999999999988877777665543  7888999987643           112


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.|.-.
T Consensus        86 ~id~li~~Ag~   96 (253)
T 3qiv_A           86 GIDYLVNNAAI   96 (253)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            68999998754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=91.78  E-value=0.53  Score=34.85  Aligned_cols=75  Identities=15%  Similarity=-0.095  Sum_probs=52.4

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----------CCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~  129 (189)
                      +++++=.|++ |+++..++    +.|++|+.++.+++.++.+...+...+.  ++.++.+|+.+..          ....
T Consensus         7 ~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~g~   83 (252)
T 3h7a_A            7 NATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGG--RIVARSLDARNEDEVTAFLNAADAHAP   83 (252)
T ss_dssp             SCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence            5566655544 55555554    4599999999999888777777766553  7899999987643          0146


Q ss_pred             ccEEEECCCCCC
Q psy13204        130 GDVVFLSPPWGG  141 (189)
Q Consensus       130 ~D~v~~npp~~~  141 (189)
                      .|+++.|.-...
T Consensus        84 id~lv~nAg~~~   95 (252)
T 3h7a_A           84 LEVTIFNVGANV   95 (252)
T ss_dssp             EEEEEECCCCCC
T ss_pred             ceEEEECCCcCC
Confidence            899999876543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.63  E-value=1  Score=33.37  Aligned_cols=77  Identities=17%  Similarity=0.178  Sum_probs=53.2

Q ss_pred             CCEEEEecC-CCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFC-GCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~-G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|+ |.|.   ++..+++.|++|+.++.+++..+.+.+.+...+. .++.++.+|+.+..           ...
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  100 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGL-GRVEAVVCDVTSTEAVDALITQTVEKAG  100 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCS-SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC-CceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence            667776665 4433   4444556699999999999888777766654443 47899999987643           113


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      .+|+++.|.-...
T Consensus       101 ~id~li~~Ag~~~  113 (266)
T 3o38_A          101 RLDVLVNNAGLGG  113 (266)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCcEEEECCCcCC
Confidence            6899999876543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=91.62  E-value=0.93  Score=33.54  Aligned_cols=74  Identities=14%  Similarity=-0.009  Sum_probs=51.8

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..++    +.|++|+.++.+++..+...+.+...+.  ++.++.+|..+..           ...
T Consensus        12 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A           12 DAVAIVTG-AAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGG--KAIGLECNVTDEQHREAVIKAALDQFG   88 (256)
T ss_dssp             TCEEEECS-CSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            55666555 5555555554    4599999999999888777776665553  7888999987643           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        89 ~id~lv~nAg~~  100 (256)
T 3gaf_A           89 KITVLVNNAGGG  100 (256)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986544

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=91.39  E-value=0.91  Score=34.09  Aligned_cols=75  Identities=13%  Similarity=-0.002  Sum_probs=51.7

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|+ +|+++..+    ++.|++|+.++.+++..+.+.+.+...+.  ++.++.+|+.+..           ...
T Consensus        24 ~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           24 PQTAFVTGV-SSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGH--DVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             -CEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            666766664 45555554    44599999999999888777766665543  7889999987643           113


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus       101 ~id~lv~nAg~~~  113 (279)
T 3sju_A          101 PIGILVNSAGRNG  113 (279)
T ss_dssp             SCCEEEECCCCCC
T ss_pred             CCcEEEECCCCCC
Confidence            6899999875543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=91.22  E-value=0.079  Score=41.18  Aligned_cols=30  Identities=13%  Similarity=0.196  Sum_probs=23.9

Q ss_pred             ceEEE-eCCcccCC---CCCCccEEEECCCCCCC
Q psy13204        113 KIQFI-QGDFFALA---PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       113 ~~~~~-~~d~~~~~---~~~~~D~v~~npp~~~~  142 (189)
                      ...++ ++|+.+.+   +..++|+|++||||...
T Consensus        38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~   71 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIM   71 (319)
T ss_dssp             EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCC
T ss_pred             cceEEECCcHHHHHHhCccCCcCEEEECCCCCCC
Confidence            46777 99988754   56689999999999853

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=91.09  E-value=0.51  Score=37.49  Aligned_cols=42  Identities=26%  Similarity=0.195  Sum_probs=33.5

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-CC-eEEEEeCCHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQ  102 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~  102 (189)
                      ++++++|+-+|+|. |.+++.+++. |+ +|+++|.+++.++.++
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  227 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS  227 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            45589999999875 6777777765 87 8999999998887764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=90.80  E-value=1.6  Score=32.40  Aligned_cols=76  Identities=9%  Similarity=-0.086  Sum_probs=51.2

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------CCCCccE
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDV  132 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~  132 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++.+++..+...+.+...+....+.++.+|..+..       .-...|+
T Consensus        10 ~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   88 (267)
T 3t4x_A           10 GKTALVTG-STAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI   88 (267)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence            56666555 5566555554    4599999999999888777666655543236778888876532       2236899


Q ss_pred             EEECCCCC
Q psy13204        133 VFLSPPWG  140 (189)
Q Consensus       133 v~~npp~~  140 (189)
                      ++.|.-..
T Consensus        89 lv~nAg~~   96 (267)
T 3t4x_A           89 LINNLGIF   96 (267)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
Confidence            99986543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=90.75  E-value=1.7  Score=32.22  Aligned_cols=75  Identities=13%  Similarity=0.063  Sum_probs=51.6

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEeCCcccCCC-----------C
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALAP-----------S  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~-----------~  127 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++.+++.++.+.+.+.. .+.  ++.++.+|+.+...           .
T Consensus        20 ~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           20 GKRALITG-ATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGT--DVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            56666555 4555555554    4599999999999888777666544 343  78899999887541           1


Q ss_pred             CCccEEEECCCCCC
Q psy13204        128 LQGDVVFLSPPWGG  141 (189)
Q Consensus       128 ~~~D~v~~npp~~~  141 (189)
                      ...|+++.|.-...
T Consensus        97 g~id~lv~nAg~~~  110 (266)
T 4egf_A           97 GGLDVLVNNAGISH  110 (266)
T ss_dssp             TSCSEEEEECCCCC
T ss_pred             CCCCEEEECCCcCC
Confidence            26899999865443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.64  E-value=0.87  Score=32.79  Aligned_cols=60  Identities=22%  Similarity=0.170  Sum_probs=40.5

Q ss_pred             CCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEECCC
Q psy13204         72 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP  138 (189)
Q Consensus        72 ~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~npp  138 (189)
                      ||.|.++..+++.    |..|+.+|.+++.++...+.   .    ...++.+|..+..     .-..+|++++..|
T Consensus         6 iG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~----~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   74 (218)
T 3l4b_C            6 IGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L----KATIIHGDGSHKEILRDAEVSKNDVVVILTP   74 (218)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S----SSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred             ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c----CCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence            4557777776653    88999999999887654322   1    4578888877632     2346788877544

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.56  E-value=0.51  Score=38.51  Aligned_cols=57  Identities=18%  Similarity=0.217  Sum_probs=41.6

Q ss_pred             CCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         72 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        72 ~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      ||.|..+..+++.    +..|+.+|.+++.++.+..++       .+.+++||+.+..     .-...|+++.
T Consensus         9 ~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~Agi~~ad~~ia   74 (461)
T 4g65_A            9 LGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEAGAQDADMLVA   74 (461)
T ss_dssp             ECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred             ECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence            5666777777664    778999999999988765542       5688999987753     2246777776

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=90.50  E-value=1.5  Score=28.60  Aligned_cols=66  Identities=18%  Similarity=0.123  Sum_probs=40.3

Q ss_pred             CEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         65 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      .+|+=+|+  |.++..+++    .|.+|+.+|.+++..+.+...   .    .+.++.+|..+..     ....+|+|+.
T Consensus         5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~----~~~~~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---c----CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence            35655555  666655544    488999999999876554322   1    3456667654321     1246899888


Q ss_pred             CCCC
Q psy13204        136 SPPW  139 (189)
Q Consensus       136 npp~  139 (189)
                      ..|-
T Consensus        76 ~~~~   79 (140)
T 1lss_A           76 VTGK   79 (140)
T ss_dssp             CCSC
T ss_pred             eeCC
Confidence            7653

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=90.38  E-value=1.6  Score=32.78  Aligned_cols=75  Identities=15%  Similarity=-0.037  Sum_probs=52.9

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC-C-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-A-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-----------~~  127 (189)
                      ++++|=.| |+|+++.++++    .|++|+.++.+++..+.+.+.+...+. .++.++.+|+.+. .           ..
T Consensus        12 ~k~vlITG-as~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           12 RRCAVVTG-GNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             CCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEec-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            56666444 55666666554    499999999999888777666655443 3788999998775 2           11


Q ss_pred             CCccEEEECCCCC
Q psy13204        128 LQGDVVFLSPPWG  140 (189)
Q Consensus       128 ~~~D~v~~npp~~  140 (189)
                      ...|++|.|.-..
T Consensus        90 g~iD~lv~nAg~~  102 (311)
T 3o26_A           90 GKLDILVNNAGVA  102 (311)
T ss_dssp             SSCCEEEECCCCC
T ss_pred             CCCCEEEECCccc
Confidence            3789999987654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=90.17  E-value=0.95  Score=33.97  Aligned_cols=74  Identities=15%  Similarity=0.118  Sum_probs=51.8

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----------CCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~  129 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++..+.+...+...+.  ++.++.+|..+..          ....
T Consensus        33 gk~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~g~  109 (275)
T 4imr_A           33 GRTALVTG-SSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGG--TAQELAGDLSEAGAGTDLIERAEAIAP  109 (275)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTC--CEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            66666555 55665555544    599999999998877776666655553  7889999987753          1136


Q ss_pred             ccEEEECCCCC
Q psy13204        130 GDVVFLSPPWG  140 (189)
Q Consensus       130 ~D~v~~npp~~  140 (189)
                      .|+++.|.-..
T Consensus       110 iD~lvnnAg~~  120 (275)
T 4imr_A          110 VDILVINASAQ  120 (275)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            89999986544

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=90.15  E-value=1.6  Score=32.30  Aligned_cols=73  Identities=16%  Similarity=0.081  Sum_probs=52.4

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..+++    .|++|+.++.+++..+...+.+...+.  ++.++.+|+.+..           ...
T Consensus        29 ~k~vlITG-as~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           29 GQVAVVTG-ASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGG--EAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC--ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            56666555 55666665544    499999999999888877777766553  7888999987643           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.|.-.
T Consensus       106 ~id~lv~~Ag~  116 (262)
T 3rkr_A          106 RCDVLVNNAGV  116 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            68999998765

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=90.01  E-value=2.2  Score=31.81  Aligned_cols=74  Identities=16%  Similarity=0.044  Sum_probs=50.1

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++..+.+.+.+...+.  ++.++.+|+.+..           .-.
T Consensus        22 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           22 SEVALVTG-ATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             SCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            56666555 45666655544    499999999999877666555554443  6788889887642           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .+|+++.|.-..
T Consensus        99 ~iD~lv~~Ag~~  110 (277)
T 2rhc_B           99 PVDVLVNNAGRP  110 (277)
T ss_dssp             SCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=89.92  E-value=1.9  Score=31.78  Aligned_cols=76  Identities=11%  Similarity=-0.042  Sum_probs=51.2

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.|+ +|+++..++    +.|++|+.++.+++..+.+.+.+...... .++.++.+|+.+..           ..
T Consensus         7 ~k~~lVTGa-s~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (250)
T 3nyw_A            7 KGLAIITGA-SQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY   85 (250)
T ss_dssp             CCEEEEEST-TSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence            556665554 455555544    45999999999998887777666554211 36788889987643           11


Q ss_pred             CCccEEEECCCCC
Q psy13204        128 LQGDVVFLSPPWG  140 (189)
Q Consensus       128 ~~~D~v~~npp~~  140 (189)
                      ...|+++.|.-..
T Consensus        86 g~iD~lvnnAg~~   98 (250)
T 3nyw_A           86 GAVDILVNAAAMF   98 (250)
T ss_dssp             CCEEEEEECCCCC
T ss_pred             CCCCEEEECCCcC
Confidence            3689999987553

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=89.88  E-value=0.8  Score=35.44  Aligned_cols=43  Identities=33%  Similarity=0.435  Sum_probs=33.8

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~  103 (189)
                      ++++++|+-.|+|. |..++.+++. |++|+++|.+++..+.+++
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            34588888888864 7777777775 8899999999988887643

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=89.86  E-value=1.7  Score=32.88  Aligned_cols=74  Identities=19%  Similarity=0.159  Sum_probs=49.8

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCC------------HHHHHHHHHHHHHhCCCCceEEEeCCcccCC--
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDID------------PAKLRLAQHNASVYGVSHKIQFIQGDFFALA--  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--  125 (189)
                      ++++|=.|++ |+++..+    ++.|++|+.+|.+            ++.++.+...+...+.  ++.++.+|+.+..  
T Consensus        28 gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           28 GKVAFITGAA-RGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR--RIIASQVDVRDFDAM  104 (299)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHH
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHH
Confidence            6677666655 4444444    4459999999987            6666666555555553  7889999987643  


Q ss_pred             ---------CCCCccEEEECCCCC
Q psy13204        126 ---------PSLQGDVVFLSPPWG  140 (189)
Q Consensus       126 ---------~~~~~D~v~~npp~~  140 (189)
                               .....|+++.|.-..
T Consensus       105 ~~~~~~~~~~~g~iD~lv~nAg~~  128 (299)
T 3t7c_A          105 QAAVDDGVTQLGRLDIVLANAALA  128 (299)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCC
Confidence                     113689999886543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=89.82  E-value=1.2  Score=33.50  Aligned_cols=74  Identities=14%  Similarity=-0.045  Sum_probs=50.7

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++.+++.++.+...+...+  .++.++.+|+.+..           ...
T Consensus        28 ~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           28 SPVALITG-AGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            56666555 4555555554    459999999999988877666654444  37888999987642           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus       105 ~iD~lVnnAg~~  116 (283)
T 3v8b_A          105 HLDIVVANAGIN  116 (283)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=89.72  E-value=1.9  Score=32.14  Aligned_cols=75  Identities=19%  Similarity=0.110  Sum_probs=50.4

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCC------------HHHHHHHHHHHHHhCCCCceEEEeCCcccCC--
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDID------------PAKLRLAQHNASVYGVSHKIQFIQGDFFALA--  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--  125 (189)
                      ++++|=.| |+|+++..+    ++.|++|+.++.+            ++.++.........+.  ++.++.+|+.+..  
T Consensus        13 gk~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v   89 (278)
T 3sx2_A           13 GKVAFITG-AARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS--RIVARQADVRDRESL   89 (278)
T ss_dssp             TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC--CEEEEECCTTCHHHH
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHH
Confidence            66666555 455555554    4459999999987            6666666555555553  7889999987643  


Q ss_pred             ---------CCCCccEEEECCCCCC
Q psy13204        126 ---------PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 ---------~~~~~D~v~~npp~~~  141 (189)
                               .....|+++.|.-...
T Consensus        90 ~~~~~~~~~~~g~id~lv~nAg~~~  114 (278)
T 3sx2_A           90 SAALQAGLDELGRLDIVVANAGIAP  114 (278)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCC
Confidence                     1136899999875543

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=89.61  E-value=2.5  Score=31.38  Aligned_cols=74  Identities=14%  Similarity=0.008  Sum_probs=51.3

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..+++    .|++|++++.+++..+...+.+...+.  ++.++.+|+.+..           ...
T Consensus        31 ~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~g  107 (272)
T 1yb1_A           31 GEIVLITG-AGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVKAEIG  107 (272)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCC--eEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            56666444 56676666654    489999999999877766665555443  7888999987642           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .+|+++.|.-..
T Consensus       108 ~iD~li~~Ag~~  119 (272)
T 1yb1_A          108 DVSILVNNAGVV  119 (272)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCcEEEECCCcC
Confidence            689999987544

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=89.60  E-value=2.1  Score=31.75  Aligned_cols=76  Identities=12%  Similarity=0.011  Sum_probs=51.4

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.|+ +|+++..++    +.|++|+.++.+++..+.+.+.+.. .+- .++.++.+|..+..           ..
T Consensus         8 ~k~~lVTGa-s~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            8 EAVAVVTGG-SSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPG-ARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            556665554 455555544    4599999999999888777766654 322 25888999987643           11


Q ss_pred             CCccEEEECCCCCC
Q psy13204        128 LQGDVVFLSPPWGG  141 (189)
Q Consensus       128 ~~~D~v~~npp~~~  141 (189)
                      ...|+++.|.-...
T Consensus        86 g~id~lvnnAg~~~   99 (265)
T 3lf2_A           86 GCASILVNNAGQGR   99 (265)
T ss_dssp             CSCSEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            36899999876543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=89.59  E-value=2.3  Score=31.68  Aligned_cols=73  Identities=11%  Similarity=-0.043  Sum_probs=46.6

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------CCCCccEEE
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVVF  134 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v~  134 (189)
                      |+++|=-|++.|.   .+..+++.|++|+..|.+..  +.+.+.+...+.  ++..+.+|..+..      .....|+++
T Consensus         9 GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            9 GRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDGG--NASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTTC--CEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            6666666655544   34444556999999998742  223334444554  7888889887654      234689999


Q ss_pred             ECCCCC
Q psy13204        135 LSPPWG  140 (189)
Q Consensus       135 ~npp~~  140 (189)
                      .|.=..
T Consensus        85 NNAGi~   90 (247)
T 4hp8_A           85 NNAGII   90 (247)
T ss_dssp             ECCCCC
T ss_pred             ECCCCC
Confidence            986443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.57  E-value=0.63  Score=37.44  Aligned_cols=63  Identities=16%  Similarity=0.173  Sum_probs=42.6

Q ss_pred             CEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         65 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      .+|+=+|+  |.++..+++    .|..|+++|.+++.++.++.    .    .+.++.+|+.+..     .-...|+|++
T Consensus         5 ~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~----g~~vi~GDat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            5 MRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----F----GMKVFYGDATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----T----TCCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred             CeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----C----CCeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence            34555555  556555544    48899999999999887652    2    3467889987642     2346888887


Q ss_pred             CC
Q psy13204        136 SP  137 (189)
Q Consensus       136 np  137 (189)
                      ..
T Consensus        75 ~~   76 (413)
T 3l9w_A           75 AI   76 (413)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=89.41  E-value=1.5  Score=29.56  Aligned_cols=66  Identities=12%  Similarity=-0.042  Sum_probs=40.5

Q ss_pred             EEEEecCCCChHHHHHHH----hCCeEEEEeCC-HHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         66 VVIDGFCGCGGNTIQFAA----VCQKVISIDID-PAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      +++=+|  .|..+..+++    .|.+|+.+|.+ ++..+.......     ..+.++.+|..+..     .-...|+|+.
T Consensus         5 ~vlI~G--~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (153)
T 1id1_A            5 HFIVCG--HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CEEEEC--CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             cEEEEC--CCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence            454444  4676666654    38899999997 454444332221     24688899876532     2346788887


Q ss_pred             CCC
Q psy13204        136 SPP  138 (189)
Q Consensus       136 npp  138 (189)
                      ..+
T Consensus        78 ~~~   80 (153)
T 1id1_A           78 LSD   80 (153)
T ss_dssp             CSS
T ss_pred             ecC
Confidence            543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=89.37  E-value=1.9  Score=32.19  Aligned_cols=74  Identities=12%  Similarity=-0.127  Sum_probs=51.9

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++.+++..+.....+...+.  ++.++.+|+.+..           ...
T Consensus        28 ~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (270)
T 3ftp_A           28 KQVAIVTG-ASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLKEFG  104 (270)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            56666444 5566665554    4599999999999888777777666654  6788888887642           112


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus       105 ~iD~lvnnAg~~  116 (270)
T 3ftp_A          105 ALNVLVNNAGIT  116 (270)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999987544

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=89.35  E-value=0.77  Score=36.03  Aligned_cols=43  Identities=23%  Similarity=0.313  Sum_probs=33.4

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-CC-eEEEEeCCHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH  103 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~  103 (189)
                      ++++++|+-.|+|. |.+++.+++. |+ +|+++|.+++.++.+++
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            34588999999875 6677777765 77 69999999998887753

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=89.33  E-value=2  Score=32.04  Aligned_cols=75  Identities=23%  Similarity=0.077  Sum_probs=50.3

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCC------------HHHHHHHHHHHHHhCCCCceEEEeCCcccCC--
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDID------------PAKLRLAQHNASVYGVSHKIQFIQGDFFALA--  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--  125 (189)
                      ++++|=.| |+|+++..++    +.|++|+.+|.+            .+.++.+.......+.  ++.++.+|+.+..  
T Consensus        10 gk~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A           10 DKVVLVTG-GARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR--KAYTAEVDVRDRAAV   86 (287)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS--CEEEEECCTTCHHHH
T ss_pred             CCEEEEeC-CCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC--ceEEEEccCCCHHHH
Confidence            56666555 4455555554    459999999987            6666666666655543  7889999987643  


Q ss_pred             ---------CCCCccEEEECCCCCC
Q psy13204        126 ---------PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 ---------~~~~~D~v~~npp~~~  141 (189)
                               .....|+++.|.-...
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~  111 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANAGICP  111 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCc
Confidence                     1126899999875543

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=89.15  E-value=1.9  Score=32.30  Aligned_cols=74  Identities=16%  Similarity=0.110  Sum_probs=48.9

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCC----------------HHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDID----------------PAKLRLAQHNASVYGVSHKIQFIQGDFFA  123 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  123 (189)
                      ++++|=.|++ |+++..+    ++.|++|+.+|.+                ++.++...+.....+  .++.++.+|+.+
T Consensus        11 ~k~~lVTGas-~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   87 (286)
T 3uve_A           11 GKVAFVTGAA-RGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVDVRD   87 (286)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcCCCC
Confidence            6666655555 4444444    4459999999987                666665555554444  378889999876


Q ss_pred             CC-----------CCCCccEEEECCCCC
Q psy13204        124 LA-----------PSLQGDVVFLSPPWG  140 (189)
Q Consensus       124 ~~-----------~~~~~D~v~~npp~~  140 (189)
                      ..           .....|+++.|.-..
T Consensus        88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~  115 (286)
T 3uve_A           88 YDALKAAVDSGVEQLGRLDIIVANAGIG  115 (286)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence            43           113689999987554

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=89.14  E-value=2.6  Score=31.58  Aligned_cols=73  Identities=19%  Similarity=0.148  Sum_probs=49.0

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeC-CHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-----------C
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDI-DPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------S  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  127 (189)
                      ++++|=.| |+|+++..+    ++.|++|+.++. +++..+.....+...+.  ++.++.+|+.+...           .
T Consensus        29 ~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           29 RPVAIVTG-GRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGA--RVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTC--CEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             CCEEEEec-CCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            56666555 455555554    445999999995 77777666666655553  78899999877531           1


Q ss_pred             CCccEEEECCCC
Q psy13204        128 LQGDVVFLSPPW  139 (189)
Q Consensus       128 ~~~D~v~~npp~  139 (189)
                      ...|+++.|.-.
T Consensus       106 g~iD~lvnnAg~  117 (280)
T 4da9_A          106 GRIDCLVNNAGI  117 (280)
T ss_dssp             SCCCEEEEECC-
T ss_pred             CCCCEEEECCCc
Confidence            268999998654

>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*

Probab=89.11  E-value=0.53  Score=35.34  Aligned_cols=29  Identities=34%  Similarity=0.548  Sum_probs=24.6

Q ss_pred             CceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204        112 HKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus       112 ~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      .++++.+.|..+.. ...=|+|++||||..
T Consensus       148 ~~v~i~~~Df~~~i-~~~~~fvY~DPPY~~  176 (259)
T 1yf3_A          148 DKIIFSSLHFKDVK-ILDGDFVYVDPPYLI  176 (259)
T ss_dssp             GGEEEECCCGGGCC-CCTTEEEEECCCCTT
T ss_pred             cCCEEEcCCHHHHh-CCCCeEEEECCCCCC
Confidence            38999999999987 455689999999976

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.09  E-value=1.8  Score=27.31  Aligned_cols=67  Identities=21%  Similarity=-0.036  Sum_probs=43.8

Q ss_pred             CCEEEEecCCCChHHHHHHH----hC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVF  134 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~  134 (189)
                      +.+|+=+|+  |.++..+++    .| .+|+++|.+++..+.+.    .    ..+.+...|..+..    .-..+|+|+
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~~~~~d~vi   74 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKALGGFDAVI   74 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence            346777776  666665544    37 78999999998766543    1    24566777765432    113689999


Q ss_pred             ECCCCC
Q psy13204        135 LSPPWG  140 (189)
Q Consensus       135 ~npp~~  140 (189)
                      ...|+.
T Consensus        75 ~~~~~~   80 (118)
T 3ic5_A           75 SAAPFF   80 (118)
T ss_dssp             ECSCGG
T ss_pred             ECCCch
Confidence            987754

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=89.04  E-value=1  Score=33.82  Aligned_cols=74  Identities=12%  Similarity=-0.043  Sum_probs=51.3

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++.+++..+...+.+...+.  ++.++.+|+.+..           .-.
T Consensus        32 gk~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~g  108 (276)
T 3r1i_A           32 GKRALITG-ASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGG--KALPIRCDVTQPDQVRGMLDQMTGELG  108 (276)
T ss_dssp             TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            66666555 4456555554    4599999999998887777666665553  7888899987643           112


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus       109 ~iD~lvnnAg~~  120 (276)
T 3r1i_A          109 GIDIAVCNAGIV  120 (276)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986544

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.80  E-value=2.1  Score=31.93  Aligned_cols=75  Identities=21%  Similarity=0.030  Sum_probs=50.1

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeC-------------CHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDI-------------DPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-  125 (189)
                      ++++|=.|++ |+++..+    ++.|++|+.+|.             +++.++.+.+.....+.  ++.++.+|+.+.. 
T Consensus        15 gk~~lVTGas-~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~   91 (280)
T 3pgx_A           15 GRVAFITGAA-RGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR--KALTRVLDVRDDAA   91 (280)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC--CEEEEECCTTCHHH
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHH
Confidence            6666655544 5555554    445999999998             67777766666555543  7888899987643 


Q ss_pred             ----------CCCCccEEEECCCCCC
Q psy13204        126 ----------PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 ----------~~~~~D~v~~npp~~~  141 (189)
                                .....|+++.|.-...
T Consensus        92 v~~~~~~~~~~~g~id~lvnnAg~~~  117 (280)
T 3pgx_A           92 LRELVADGMEQFGRLDVVVANAGVLS  117 (280)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence                      1136899999865543

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=88.73  E-value=1.7  Score=32.42  Aligned_cols=74  Identities=9%  Similarity=0.080  Sum_probs=52.1

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..+++    .|++|+.++.+++..+.+.+.+...+.  ++.++.+|+.+..           ...
T Consensus        26 gk~~lVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           26 GRTALVTG-SSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGH--DAEAVAFDVTSESEIIEAFARLDEQGI  102 (271)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            56666555 55665555544    499999999999888877777665553  7888888887643           123


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus       103 ~iD~lv~nAg~~  114 (271)
T 4ibo_A          103 DVDILVNNAGIQ  114 (271)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986544

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=88.71  E-value=1.7  Score=33.89  Aligned_cols=60  Identities=12%  Similarity=0.107  Sum_probs=42.9

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC--------------------CCCceEEEeCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--------------------VSHKIQFIQGD  120 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--------------------~~~~~~~~~~d  120 (189)
                      +...|+.+|||.......+...  +..++-+|. |+.++.-++.+...+                    ...+...+-+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            3678999999999999998775  345556666 777777666655431                    12467888888


Q ss_pred             ccc
Q psy13204        121 FFA  123 (189)
Q Consensus       121 ~~~  123 (189)
                      +.+
T Consensus       176 L~d  178 (334)
T 1rjd_A          176 LND  178 (334)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            876

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=88.65  E-value=2.5  Score=31.51  Aligned_cols=75  Identities=16%  Similarity=0.085  Sum_probs=50.0

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeC-------------CHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDI-------------DPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-  125 (189)
                      ++++|=.|+ +|+++..+    ++.|++|+.+|.             +++.++...+.....+.  ++.++.+|..+.. 
T Consensus        11 ~k~~lVTGa-s~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~   87 (277)
T 3tsc_A           11 GRVAFITGA-ARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR--RIVAAVVDTRDFDR   87 (277)
T ss_dssp             TCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHH
T ss_pred             CCEEEEECC-ccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHH
Confidence            666665554 45555444    445999999998             67777666555555543  7888899987643 


Q ss_pred             ----------CCCCccEEEECCCCCC
Q psy13204        126 ----------PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 ----------~~~~~D~v~~npp~~~  141 (189)
                                .....|+++.|.-...
T Consensus        88 v~~~~~~~~~~~g~id~lvnnAg~~~  113 (277)
T 3tsc_A           88 LRKVVDDGVAALGRLDIIVANAGVAA  113 (277)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence                      1136899999875543

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=88.49  E-value=0.85  Score=34.35  Aligned_cols=73  Identities=16%  Similarity=-0.012  Sum_probs=49.5

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|+ +|+++..++    +.|++|+.++.+++.++.+...+...+  .++.++.+|+.+..           .-.
T Consensus         8 gk~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            8 GKIAIVTGA-SSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGG--GEAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             TCEEEESST-TSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTT--CCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            566665554 455555554    459999999999988777666554433  37888888887642           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.|.-.
T Consensus        85 ~iD~lvnnAg~   95 (280)
T 3tox_A           85 GLDTAFNNAGA   95 (280)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999998653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=88.47  E-value=1.5  Score=34.11  Aligned_cols=42  Identities=21%  Similarity=0.211  Sum_probs=32.4

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-CC-eEEEEeCCHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQ  102 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~  102 (189)
                      ++++++|+-.|+|. |.+++.+++. |+ +|+++|.+++..+.++
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  213 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK  213 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            45588999898764 6666666665 77 8999999998877764

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=88.29  E-value=2.8  Score=30.52  Aligned_cols=71  Identities=11%  Similarity=0.023  Sum_probs=47.2

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------CCCCccE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDV  132 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~  132 (189)
                      +++||=.| |+|+++..+++    .|++|+.++.+++.++...+...     .++.+..+|..+..       .....|+
T Consensus        14 ~k~vlVTG-as~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~id~   87 (249)
T 3f9i_A           14 GKTSLITG-ASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKTSNLDI   87 (249)
T ss_dssp             TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            66777555 45665555544    59999999999887766544432     36788888876632       2246899


Q ss_pred             EEECCCCC
Q psy13204        133 VFLSPPWG  140 (189)
Q Consensus       133 v~~npp~~  140 (189)
                      ++.|.-..
T Consensus        88 li~~Ag~~   95 (249)
T 3f9i_A           88 LVCNAGIT   95 (249)
T ss_dssp             EEECCC--
T ss_pred             EEECCCCC
Confidence            99987544

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=88.24  E-value=1.6  Score=32.26  Aligned_cols=73  Identities=19%  Similarity=0.084  Sum_probs=49.9

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++.+++..+.+...+...+  .++.++.+|+.+..           ...
T Consensus         6 ~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            6 EKVVIITG-GSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            55665444 5566655554    459999999999988877766654333  37888999987642           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.|.-.
T Consensus        83 ~id~lv~nAg~   93 (257)
T 3imf_A           83 RIDILINNAAG   93 (257)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999998653

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=88.08  E-value=2.5  Score=32.37  Aligned_cols=75  Identities=19%  Similarity=0.122  Sum_probs=49.3

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCC------------HHHHHHHHHHHHHhCCCCceEEEeCCcccCC--
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDID------------PAKLRLAQHNASVYGVSHKIQFIQGDFFALA--  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--  125 (189)
                      ++++|=.| |+|+++..++    +.|++|+.+|.+            ++.++.........+.  ++.++.+|+.+..  
T Consensus        46 gk~~lVTG-as~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           46 GKVAFITG-AARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR--RIIARQADVRDLASL  122 (317)
T ss_dssp             TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHH
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHH
Confidence            56666555 4555555554    459999999886            6666665555555553  7888999987643  


Q ss_pred             ---------CCCCccEEEECCCCCC
Q psy13204        126 ---------PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 ---------~~~~~D~v~~npp~~~  141 (189)
                               .....|++|.|.-...
T Consensus       123 ~~~~~~~~~~~g~iD~lVnnAg~~~  147 (317)
T 3oec_A          123 QAVVDEALAEFGHIDILVSNVGISN  147 (317)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCC
Confidence                     1136899999865443

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=88.04  E-value=2.8  Score=30.76  Aligned_cols=74  Identities=15%  Similarity=0.045  Sum_probs=48.9

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc--ccCC-----------C
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF--FALA-----------P  126 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~-----------~  126 (189)
                      +++++=.| |+|+++..++    +.|++|+.++.+++.++.+.+.+...+. ..+.++..|.  .+..           .
T Consensus        12 ~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           12 DRIILVTG-ASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            56666555 4555555554    4599999999999888776666554432 2678888887  3321           1


Q ss_pred             CCCccEEEECCCC
Q psy13204        127 SLQGDVVFLSPPW  139 (189)
Q Consensus       127 ~~~~D~v~~npp~  139 (189)
                      ....|+++.|.-.
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2368999998654

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=88.04  E-value=2.7  Score=31.11  Aligned_cols=75  Identities=19%  Similarity=0.016  Sum_probs=51.9

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..+++    .|++|+.++.+++..+.+.+.+...+- .++.++.+|+.+..           ...
T Consensus        10 ~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A           10 GRSVVVTG-GTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGS-GKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSS-SCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC-CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            55665444 55666655544    499999999999888777766655542 37889999987643           112


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        88 ~id~lvnnAg~~   99 (262)
T 3pk0_A           88 GIDVVCANAGVF   99 (262)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=88.04  E-value=2.6  Score=31.49  Aligned_cols=75  Identities=17%  Similarity=0.057  Sum_probs=50.9

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++.+++..+.+.+.+...+.. .++.++.+|+.+..           ..
T Consensus        11 ~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           11 DRTYLVTG-GGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            56666555 4555555554    45999999999998887777666554431 26788899987643           11


Q ss_pred             CCccEEEECCCC
Q psy13204        128 LQGDVVFLSPPW  139 (189)
Q Consensus       128 ~~~D~v~~npp~  139 (189)
                      ...|+++.|.-.
T Consensus        90 g~id~lv~nAg~  101 (281)
T 3svt_A           90 GRLHGVVHCAGG  101 (281)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            368999998654

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=87.99  E-value=3.2  Score=30.91  Aligned_cols=74  Identities=14%  Similarity=-0.052  Sum_probs=51.2

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|+ +|+++..++    +.|++|+.++.+++.++.+.+.+...+.  ++.++.+|+.+..           ...
T Consensus         4 ~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            4 DKVILITGA-SGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG--TALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             TCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            455655554 455555554    4599999999999888877777766553  7888888887642           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        81 ~iD~lVnnAG~~   92 (264)
T 3tfo_A           81 RIDVLVNNAGVM   92 (264)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986544

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=87.99  E-value=1.8  Score=32.50  Aligned_cols=74  Identities=12%  Similarity=-0.036  Sum_probs=49.5

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..+++    .|++|+.++.+++..+.+.+.+...+. ..+.++.+|+.+..           ...
T Consensus        33 gk~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           33 GRIALVTG-GGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             -CEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            66666555 55666555544    499999999999888776666554432 24588889987643           113


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.|.-.
T Consensus       111 ~iD~lvnnAG~  121 (281)
T 4dry_A          111 RLDLLVNNAGS  121 (281)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999998654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=87.98  E-value=4.2  Score=30.63  Aligned_cols=75  Identities=15%  Similarity=-0.021  Sum_probs=51.0

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCC---eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------  125 (189)
                      ++++|=.|+ +|+++..+++    .|+   +|+.++.+++.++.+.+.+.......++.++.+|+.+..           
T Consensus        33 ~k~~lVTGa-s~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           33 KKTVLITGA-SAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TCEEEEEST-TSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCEEEEecC-CChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            667776664 4555555543    466   999999999888877766655422237888999987653           


Q ss_pred             CCCCccEEEECCCC
Q psy13204        126 PSLQGDVVFLSPPW  139 (189)
Q Consensus       126 ~~~~~D~v~~npp~  139 (189)
                      .-...|+++.|.-.
T Consensus       112 ~~g~iD~lVnnAG~  125 (287)
T 3rku_A          112 EFKDIDILVNNAGK  125 (287)
T ss_dssp             GGCSCCEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence            11368999998654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=87.94  E-value=1.5  Score=34.65  Aligned_cols=43  Identities=26%  Similarity=0.207  Sum_probs=32.8

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-CC-eEEEEeCCHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH  103 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~  103 (189)
                      ++++++|+-.|+|. |.+++.+++. |+ +|+++|.+++.++.+++
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            44588998888764 6677777765 77 79999999988887743

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=87.92  E-value=2.6  Score=31.28  Aligned_cols=75  Identities=12%  Similarity=-0.090  Sum_probs=50.2

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeC-CHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDI-DPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      +++++=.| |+|+++..+++    .|++|+.++. +++..+...+.....+.  ++.++.+|..+..           ..
T Consensus        29 ~k~vlITG-as~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~  105 (271)
T 4iin_A           29 GKNVLITG-ASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGY--KAAVIKFDAASESDFIEAIQTIVQSD  105 (271)
T ss_dssp             CCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            56666555 55555555544    4999999998 66666666666655553  7889999987642           11


Q ss_pred             CCccEEEECCCCCC
Q psy13204        128 LQGDVVFLSPPWGG  141 (189)
Q Consensus       128 ~~~D~v~~npp~~~  141 (189)
                      ..+|+++.|.-...
T Consensus       106 g~id~li~nAg~~~  119 (271)
T 4iin_A          106 GGLSYLVNNAGVVR  119 (271)
T ss_dssp             SSCCEEEECCCCCC
T ss_pred             CCCCEEEECCCcCC
Confidence            36899999876543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=87.91  E-value=4.1  Score=30.43  Aligned_cols=71  Identities=15%  Similarity=0.135  Sum_probs=49.1

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------C-----CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----SL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~-----~~  128 (189)
                      +++++=.| |+|+++..+++    .|++|++++.+++.++...+.....+. .++.++.+|+.+..      .     ..
T Consensus        28 ~k~vlITG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  105 (286)
T 1xu9_A           28 GKKVIVTG-ASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKLMG  105 (286)
T ss_dssp             TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC-CceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            56676444 56666666654    489999999999887766655554443 36788899987632      0     13


Q ss_pred             CccEEEEC
Q psy13204        129 QGDVVFLS  136 (189)
Q Consensus       129 ~~D~v~~n  136 (189)
                      .+|+++.|
T Consensus       106 ~iD~li~n  113 (286)
T 1xu9_A          106 GLDMLILN  113 (286)
T ss_dssp             SCSEEEEC
T ss_pred             CCCEEEEC
Confidence            68999987

>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28

Probab=87.88  E-value=0.96  Score=34.45  Aligned_cols=46  Identities=13%  Similarity=0.208  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHH
Q psy13204         51 EKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKL   98 (189)
Q Consensus        51 ~~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~   98 (189)
                      ..+...+...++. ..+.+|+++|+|...+.+..  .+++..|++++.+
T Consensus        22 ~~l~~~i~~~lp~~~~~yvEpF~GggaV~~~~~~--~~~i~ND~n~~Li   68 (284)
T 2dpm_A           22 RQLLPVIRELIPKTYNRYFEPFVGGGALFFDLAP--KDAVINDFNAELI   68 (284)
T ss_dssp             GGGHHHHHHHSCSSCSCEEETTCTTCHHHHHHCC--SEEEEEESCHHHH
T ss_pred             HHHHHHHHHHhccccCEEEeecCCccHHHHhhhc--cceeeeecchHHH
Confidence            3456677777776 57899999999999887743  5789999999764

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=87.69  E-value=4  Score=29.42  Aligned_cols=73  Identities=19%  Similarity=0.053  Sum_probs=48.5

Q ss_pred             CEEEEecCCCChHHHHHHH----hCCeEEE-EeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         65 DVVIDGFCGCGGNTIQFAA----VCQKVIS-IDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~----~~~~v~~-vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++ +..|+|+++..+++    .|++|+. .+.+++..+...+.+...+.  ++.++.+|..+..           ...
T Consensus         2 k~vl-VTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (244)
T 1edo_A            2 PVVV-VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG--QAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             CEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTC--EEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             CEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--cEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            3444 55567777777665    4899988 57888777665555554443  6788889887642           112


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        79 ~id~li~~Ag~~   90 (244)
T 1edo_A           79 TIDVVVNNAGIT   90 (244)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986544

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=87.66  E-value=2.2  Score=31.58  Aligned_cols=77  Identities=8%  Similarity=-0.116  Sum_probs=54.4

Q ss_pred             CCEEEEecCCC--C--h-HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGC--G--G-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~--G--~-~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.|+++  |  . .+..+++.|++|+..+.+++..+.+.+.+...+- .++.++.+|..+..           .-
T Consensus         6 gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            6 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            77888777543  3  2 4555566799999999998888777766655543 36788889987642           12


Q ss_pred             CCccEEEECCCCCC
Q psy13204        128 LQGDVVFLSPPWGG  141 (189)
Q Consensus       128 ~~~D~v~~npp~~~  141 (189)
                      ...|+++.|.-...
T Consensus        85 G~iD~lvnnAg~~~   98 (256)
T 4fs3_A           85 GNIDGVYHSIAFAN   98 (256)
T ss_dssp             CCCSEEEECCCCCC
T ss_pred             CCCCEEEecccccc
Confidence            37899999876654

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=87.60  E-value=4.1  Score=29.88  Aligned_cols=72  Identities=14%  Similarity=-0.055  Sum_probs=48.1

Q ss_pred             CEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         65 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      ++++=.| |+|+++..+++    .|++|+.++.+++..+...+.+...+.  ++.++.+|..+..           ....
T Consensus         3 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (256)
T 1geg_A            3 KVALVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLGG   79 (256)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            3444444 55666666544    499999999998877666555544443  6788888887642           1136


Q ss_pred             ccEEEECCCC
Q psy13204        130 GDVVFLSPPW  139 (189)
Q Consensus       130 ~D~v~~npp~  139 (189)
                      +|+++.|.-.
T Consensus        80 id~lv~nAg~   89 (256)
T 1geg_A           80 FDVIVNNAGV   89 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999998754

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=87.34  E-value=2.9  Score=31.36  Aligned_cols=74  Identities=15%  Similarity=0.083  Sum_probs=49.5

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++..+...+.+... +  .++.++.+|+.+..           ..
T Consensus        26 ~k~vlITG-asggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (302)
T 1w6u_A           26 GKVAFITG-GGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELIKVA  102 (302)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence            55666554 55666666554    4899999999988776655554433 3  37888999987642           12


Q ss_pred             CCccEEEECCCCC
Q psy13204        128 LQGDVVFLSPPWG  140 (189)
Q Consensus       128 ~~~D~v~~npp~~  140 (189)
                      ..+|+++.|.-..
T Consensus       103 g~id~li~~Ag~~  115 (302)
T 1w6u_A          103 GHPNIVINNAAGN  115 (302)
T ss_dssp             CSCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3679999986543

>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*

Probab=87.05  E-value=0.97  Score=34.28  Aligned_cols=45  Identities=16%  Similarity=0.323  Sum_probs=36.1

Q ss_pred             HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHH
Q psy13204         52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKL   98 (189)
Q Consensus        52 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~   98 (189)
                      .+...+...++...+.+|+++|+|...+.+.  ..+++..|++++.+
T Consensus        16 ~l~~~i~~~~p~~~~yvEpF~Ggg~V~~~~~--~~~~i~ND~n~~li   60 (278)
T 2g1p_A           16 PLLDDIKRHLPKGECLVEPFVGAGSVFLNTD--FSRYILADINSDLI   60 (278)
T ss_dssp             GGHHHHHHHCCCCSEEEETTCTTCHHHHTCC--CSEEEEEESCHHHH
T ss_pred             HHHHHHHHhccccCeEEeeccCccHHHHhhc--ccceEEEeccHHHH
Confidence            4566777778777899999999999877653  45789999999765

>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28

Probab=86.78  E-value=1.1  Score=34.15  Aligned_cols=41  Identities=22%  Similarity=0.294  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHhCCCCceEEE--eCCcccCCC-CCCccEEEECCCCCC
Q psy13204         95 PAKLRLAQHNASVYGVSHKIQFI--QGDFFALAP-SLQGDVVFLSPPWGG  141 (189)
Q Consensus        95 ~~~~~~a~~~~~~~~~~~~~~~~--~~d~~~~~~-~~~~D~v~~npp~~~  141 (189)
                      ++.+..+.+.+.      ++++.  +.|+.+... ...=|+|++||||..
T Consensus       156 ~~~l~~~~~~l~------~v~i~~~~~Df~~~i~~~~~~~fvY~DPPY~~  199 (284)
T 2dpm_A          156 EELISAISVYIN------NNQLEIKVGDFEKAIVDVRTGDFVYFDPPYIP  199 (284)
T ss_dssp             HHHHHHHHHHHH------HSEEEEEESCGGGGGTTCCTTCEEEECCCCCC
T ss_pred             HHHHHHHHHHhC------CCEEEEeCCCHHHHHHhcCCCCEEEeCCCccc
Confidence            455555555554      56777  999998762 244589999999976

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=86.78  E-value=5.4  Score=30.03  Aligned_cols=74  Identities=8%  Similarity=-0.170  Sum_probs=49.4

Q ss_pred             CCEEEEecCCCC-h----HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCG-G----NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G-~----~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.|++.| +    ++..+++.|++|+.++.++...+.+.+.....+   ++.++.+|+.+..           ..
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            777887776643 2    444455669999999999766555544444332   5788889987643           11


Q ss_pred             CCccEEEECCCCC
Q psy13204        128 LQGDVVFLSPPWG  140 (189)
Q Consensus       128 ~~~D~v~~npp~~  140 (189)
                      ...|+++.|.-..
T Consensus       108 g~iD~lVnnAG~~  120 (293)
T 3grk_A          108 GKLDFLVHAIGFS  120 (293)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCccC
Confidence            3689999986544

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=86.69  E-value=3.8  Score=30.49  Aligned_cols=75  Identities=11%  Similarity=-0.096  Sum_probs=49.3

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCC------------HHHHHHHHHHHHHhCCCCceEEEeCCcccCC--
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDID------------PAKLRLAQHNASVYGVSHKIQFIQGDFFALA--  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--  125 (189)
                      ++++|=.|+ +|+++..++    +.|++|+.++.+            .+.++.........+.  ++.++.+|+.+..  
T Consensus        10 ~k~~lVTGa-s~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v   86 (281)
T 3s55_A           10 GKTALITGG-ARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGR--RCISAKVDVKDRAAL   86 (281)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHH
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHH
Confidence            566665554 455555554    459999999986            5556555555555543  7889999987642  


Q ss_pred             ---------CCCCccEEEECCCCCC
Q psy13204        126 ---------PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 ---------~~~~~D~v~~npp~~~  141 (189)
                               .....|+++.|.-...
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~  111 (281)
T 3s55_A           87 ESFVAEAEDTLGGIDIAITNAGIST  111 (281)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCCCCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCC
Confidence                     1126899999875443

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=86.60  E-value=4.2  Score=29.25  Aligned_cols=74  Identities=16%  Similarity=0.018  Sum_probs=49.8

Q ss_pred             CEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHH-HhCCCCceEEEeCCcccCC------CC-----C
Q psy13204         65 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNAS-VYGVSHKIQFIQGDFFALA------PS-----L  128 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~------~~-----~  128 (189)
                      ++++=.| |+|+++..+++    .|++|+.++.+++.++.+.+.+. ..+.  ++.++.+|..+..      ..     .
T Consensus         3 k~vlITG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            3 KVAVITG-ASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGV--EVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCC--eEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            4455444 55666666554    48999999999988777666554 3443  7889999987643      11     2


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        80 ~id~li~~Ag~~~   92 (235)
T 3l77_A           80 DVDVVVANAGLGY   92 (235)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             CCCEEEECCcccc
Confidence            6899999875543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=86.16  E-value=2  Score=34.30  Aligned_cols=41  Identities=17%  Similarity=0.030  Sum_probs=30.7

Q ss_pred             CEEEEecCCCChHHHHHHHh---------CCeEEEEeCCHHHHHHHHHHH
Q psy13204         65 DVVIDGFCGCGGNTIQFAAV---------CQKVISIDIDPAKLRLAQHNA  105 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~---------~~~v~~vD~~~~~~~~a~~~~  105 (189)
                      -.|+|+|+|.|.+..-+.+.         ..+++.||+|+...+.-++.+
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L  131 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  131 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence            36999999999998777542         237889999998776544433

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=86.10  E-value=2.5  Score=32.75  Aligned_cols=42  Identities=19%  Similarity=0.154  Sum_probs=31.9

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-CCeEEEEeCCHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQ  102 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~~~v~~vD~~~~~~~~a~  102 (189)
                      ++++++|+-.|+|. |..++.+++. |++|++++.+++..+.++
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~  209 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK  209 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            45588998888753 5566666654 888999999998887765

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=85.90  E-value=3.6  Score=30.77  Aligned_cols=71  Identities=18%  Similarity=0.037  Sum_probs=47.9

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|++ |+++..+    ++.|++|+.++.+++..+.+.+..   +  .++.++.+|+.+..           ...
T Consensus        29 gk~vlVTGas-~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (277)
T 3gvc_A           29 GKVAIVTGAG-AGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---G--CGAAACRVDVSDEQQIIAMVDACVAAFG  102 (277)
T ss_dssp             TCEEEETTTT-STHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C--SSCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C--CcceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            6667666654 4444444    455999999999988776655443   3  37788899987643           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus       103 ~iD~lvnnAg~~  114 (277)
T 3gvc_A          103 GVDKLVANAGVV  114 (277)
T ss_dssp             SCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986554

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=85.88  E-value=4.4  Score=29.24  Aligned_cols=74  Identities=14%  Similarity=0.082  Sum_probs=49.4

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      +++++ +..|+|+++..+++    .|++|+.++.+++..+.....+.. .+.  ++.++.+|..+..           ..
T Consensus         7 ~~~vl-VtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            7 GKVSL-VTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGV--KAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCC--ceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45555 44566777766654    489999999998877665554433 333  6788888877642           11


Q ss_pred             CCccEEEECCCCC
Q psy13204        128 LQGDVVFLSPPWG  140 (189)
Q Consensus       128 ~~~D~v~~npp~~  140 (189)
                      ..+|+++.|.-..
T Consensus        84 ~~~d~vi~~Ag~~   96 (248)
T 2pnf_A           84 DGIDILVNNAGIT   96 (248)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3689999986544

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=85.74  E-value=5.9  Score=28.86  Aligned_cols=74  Identities=15%  Similarity=0.002  Sum_probs=50.1

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++.++.+.+.+...+.  ++.++.+|..+..           ...
T Consensus         7 ~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            7 GKVALITG-ASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGA--KVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             TCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            55666555 55666655544    499999999998887766666554443  6888889987642           013


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        84 ~id~lv~nAg~~   95 (247)
T 2jah_A           84 GLDILVNNAGIM   95 (247)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986543

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=85.66  E-value=5.9  Score=29.38  Aligned_cols=76  Identities=11%  Similarity=0.020  Sum_probs=51.8

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------C-----CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----SL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~-----~~  128 (189)
                      ++++|=.| |+|+++..+++    .|++|++++.++...+.....+...+...++.++.+|+.+..      .     ..
T Consensus        32 ~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           32 DRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            55665444 56676666654    489999999998877766666665554346788888887642      0     12


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .+|+++.|.-..
T Consensus       111 ~iD~vi~~Ag~~  122 (279)
T 1xg5_A          111 GVDICINNAGLA  122 (279)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999886543

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=85.63  E-value=4.4  Score=29.38  Aligned_cols=74  Identities=14%  Similarity=0.031  Sum_probs=50.4

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------C-----CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----SL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~-----~~  128 (189)
                      +++++ +..|+|+++..+++    .|++|+.++.+++..+...+.+...+.  ++.++.+|..+..      .     ..
T Consensus        11 ~~~vl-VtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   87 (255)
T 1fmc_A           11 GKCAI-ITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             TCEEE-ETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEE-EECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCC--ceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            55555 44566777777655    489999999998877666555554443  6788889887642      0     12


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .+|+++.+.-..
T Consensus        88 ~~d~vi~~Ag~~   99 (255)
T 1fmc_A           88 KVDILVNNAGGG   99 (255)
T ss_dssp             SCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999886543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=85.61  E-value=4.7  Score=30.15  Aligned_cols=76  Identities=8%  Similarity=0.035  Sum_probs=49.2

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeC-CHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDI-DPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++. +++..+...+.+....- .++.++.+|+.+..           .-
T Consensus        25 ~k~~lVTG-as~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           25 TKTAVITG-STSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSS-GTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             TCEEEEET-CSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCS-SCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccC-CcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            56666555 4455555554    45999999998 66666665555543322 37888889987642           11


Q ss_pred             CCccEEEECCCCCC
Q psy13204        128 LQGDVVFLSPPWGG  141 (189)
Q Consensus       128 ~~~D~v~~npp~~~  141 (189)
                      ...|+++.|.-...
T Consensus       103 g~iD~lv~nAg~~~  116 (281)
T 3v2h_A          103 GGADILVNNAGVQF  116 (281)
T ss_dssp             SSCSEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            36899999876543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=85.52  E-value=3.9  Score=30.06  Aligned_cols=72  Identities=18%  Similarity=0.047  Sum_probs=48.4

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++.+++..+......   +  .++.++.+|+.+..           ...
T Consensus         8 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   81 (259)
T 4e6p_A            8 GKSALITG-SARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G--PAAYAVQMDVTRQDSIDAAIAATVEHAG   81 (259)
T ss_dssp             TCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            56666555 5566555554    45999999999988766554433   2  36788889987643           113


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        82 ~id~lv~~Ag~~~   94 (259)
T 4e6p_A           82 GLDILVNNAALFD   94 (259)
T ss_dssp             SCCEEEECCCCCC
T ss_pred             CCCEEEECCCcCC
Confidence            6899999876543

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=85.46  E-value=6.7  Score=28.76  Aligned_cols=74  Identities=14%  Similarity=-0.062  Sum_probs=49.8

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeC-CHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------C-----C
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDI-DPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----S  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~-----~  127 (189)
                      +++++ +..|+|+++..+++    .|++|++++. +++..+.....+...+.  ++.++.+|+.+..      .     .
T Consensus        21 ~k~vl-ItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   97 (274)
T 1ja9_A           21 GKVAL-TTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVSHF   97 (274)
T ss_dssp             TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            56666 55566777766655    4899999998 77776665555554443  6788899987642      0     1


Q ss_pred             CCccEEEECCCCC
Q psy13204        128 LQGDVVFLSPPWG  140 (189)
Q Consensus       128 ~~~D~v~~npp~~  140 (189)
                      ..+|+++.|.-..
T Consensus        98 ~~~d~vi~~Ag~~  110 (274)
T 1ja9_A           98 GGLDFVMSNSGME  110 (274)
T ss_dssp             SCEEEEECCCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            2689999876544

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=85.44  E-value=3.3  Score=30.89  Aligned_cols=73  Identities=11%  Similarity=-0.048  Sum_probs=49.1

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.|+ +|+++..++    +.|++|+.++.+++..+.+...+.. .+  .++.++.+|+.+..           ..
T Consensus        27 ~k~~lVTGa-s~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~  103 (277)
T 4fc7_A           27 DKVAFITGG-GSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG--RRCLPLSMDVRAPPAVMAAVDQALKEF  103 (277)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            666765554 455555554    4589999999998877665555432 34  37889999987642           11


Q ss_pred             CCccEEEECCCC
Q psy13204        128 LQGDVVFLSPPW  139 (189)
Q Consensus       128 ~~~D~v~~npp~  139 (189)
                      ...|+++.|.-.
T Consensus       104 g~id~lv~nAg~  115 (277)
T 4fc7_A          104 GRIDILINCAAG  115 (277)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcC
Confidence            368999998653

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=85.32  E-value=6.1  Score=29.29  Aligned_cols=74  Identities=8%  Similarity=-0.016  Sum_probs=50.4

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC-
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS-  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~-  127 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++.++.+.+.+...+.  ++.++.+|+.+..           .- 
T Consensus        21 ~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           21 GTTALVTG-GSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVFD   97 (273)
T ss_dssp             TCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            56666555 55666655544    499999999999877666555554443  6788889887642           11 


Q ss_pred             CCccEEEECCCCC
Q psy13204        128 LQGDVVFLSPPWG  140 (189)
Q Consensus       128 ~~~D~v~~npp~~  140 (189)
                      ...|+++.|.-..
T Consensus        98 g~id~lv~nAg~~  110 (273)
T 1ae1_A           98 GKLNILVNNAGVV  110 (273)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCcEEEECCCCC
Confidence            5689999986543

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=85.28  E-value=7.3  Score=28.75  Aligned_cols=73  Identities=10%  Similarity=-0.050  Sum_probs=49.9

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeC-CHHHHHHHHHHHHHh-CCCCceEEEeCCcccC----C--------
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDI-DPAKLRLAQHNASVY-GVSHKIQFIQGDFFAL----A--------  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~-~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~----~--------  125 (189)
                      +++++ +..|+|+++..+++    .|++|+.++. +++..+.+.+.+... +  .++.++.+|+.+.    .        
T Consensus        11 ~k~~l-VTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A           11 CPAAV-ITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA--GSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             CCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcC--CceEEEeccCCCccccHHHHHHHHHH
Confidence            55666 55566777666654    4999999999 887776665555443 3  3688889998776    2        


Q ss_pred             ---CCCCccEEEECCCC
Q psy13204        126 ---PSLQGDVVFLSPPW  139 (189)
Q Consensus       126 ---~~~~~D~v~~npp~  139 (189)
                         .....|+++.|.-.
T Consensus        88 ~~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHhcCCCCEEEECCCC
Confidence               01268999998654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=85.16  E-value=0.77  Score=39.30  Aligned_cols=74  Identities=24%  Similarity=0.227  Sum_probs=48.1

Q ss_pred             CCEEEEecCCCChHHHHHHHh------------C--CeEEEEeC---CHHHHHHHHH-----------HHHHh-----CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV------------C--QKVISIDI---DPAKLRLAQH-----------NASVY-----GV  110 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~------------~--~~v~~vD~---~~~~~~~a~~-----------~~~~~-----~~  110 (189)
                      .-+|+|+|-|+|...+.+.+.            .  .+++.+|.   +.+-+..+..           -....     |+
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            458999999999977777543            1  35789998   5554443321           11111     11


Q ss_pred             -----C---CceEEEeCCcccCCC------CCCccEEEECC
Q psy13204        111 -----S---HKIQFIQGDFFALAP------SLQGDVVFLSP  137 (189)
Q Consensus       111 -----~---~~~~~~~~d~~~~~~------~~~~D~v~~np  137 (189)
                           .   -.+++..+|+.+.++      ...+|++++|+
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~  179 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDG  179 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECS
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECC
Confidence                 1   156788899887653      35799999986

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=85.08  E-value=1.1  Score=35.14  Aligned_cols=43  Identities=21%  Similarity=0.104  Sum_probs=33.0

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~  103 (189)
                      ++++++|+-.|+|. |.+++.+++. |++|++++.+++.++.+++
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45588999898863 5666666664 8899999999988887754

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=84.91  E-value=4.3  Score=30.01  Aligned_cols=75  Identities=15%  Similarity=-0.056  Sum_probs=50.0

Q ss_pred             CCCEEEEecCCCChHHHHHHH----hCCeEEEE-eCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------C
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAA----VCQKVISI-DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------P  126 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~----~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~  126 (189)
                      .++++|=.| |+|+++..+++    .|++|+.+ ..+++..+.....+...+.  ++.++.+|+.+..           .
T Consensus        25 ~~k~vlITG-as~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (272)
T 4e3z_A           25 DTPVVLVTG-GSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGG--EAVAIPGDVGNAADIAAMFSAVDRQ  101 (272)
T ss_dssp             CSCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            356666444 56666666654    48998765 7788877776666655543  7889999987643           0


Q ss_pred             CCCccEEEECCCCC
Q psy13204        127 SLQGDVVFLSPPWG  140 (189)
Q Consensus       127 ~~~~D~v~~npp~~  140 (189)
                      ...+|+++.|.-..
T Consensus       102 ~g~id~li~nAg~~  115 (272)
T 4e3z_A          102 FGRLDGLVNNAGIV  115 (272)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             CCCCCEEEECCCCC
Confidence            12689999986543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=84.89  E-value=3.3  Score=30.99  Aligned_cols=72  Identities=18%  Similarity=0.073  Sum_probs=47.5

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++.+++..+.....   .+  .++.++.+|+.+..           ...
T Consensus        27 ~k~vlVTG-as~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (277)
T 4dqx_A           27 QRVCIVTG-GGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE---IG--SKAFGVRVDVSSAKDAESMVEKTTAKWG  100 (277)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---HC--TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            56666555 4555555554    4599999999998776654443   23  36788889987642           112


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus       101 ~iD~lv~nAg~~~  113 (277)
T 4dqx_A          101 RVDVLVNNAGFGT  113 (277)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCCcCC
Confidence            6899999875543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=84.86  E-value=6.4  Score=28.87  Aligned_cols=74  Identities=9%  Similarity=-0.026  Sum_probs=50.3

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC-
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS-  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~-  127 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++..+...+.+...+.  ++.++.+|..+..           .- 
T Consensus         9 ~k~vlVTG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A            9 GCTALVTG-GSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANHFH   85 (260)
T ss_dssp             TCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            56666444 56666666544    499999999999877666555544443  6888889987642           11 


Q ss_pred             CCccEEEECCCCC
Q psy13204        128 LQGDVVFLSPPWG  140 (189)
Q Consensus       128 ~~~D~v~~npp~~  140 (189)
                      ...|+++.|.-..
T Consensus        86 g~id~lv~~Ag~~   98 (260)
T 2ae2_A           86 GKLNILVNNAGIV   98 (260)
T ss_dssp             TCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4689999986543

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=84.77  E-value=6.9  Score=28.18  Aligned_cols=72  Identities=14%  Similarity=0.051  Sum_probs=48.6

Q ss_pred             EEEEecCCCChHHHHHHH----hCC-------eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---------
Q psy13204         66 VVIDGFCGCGGNTIQFAA----VCQ-------KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------  125 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~----~~~-------~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------  125 (189)
                      +++ +..|+|+++..+++    .|.       +|+.++.+++..+.....+...+  .++.++.+|+.+..         
T Consensus         4 ~vl-ITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            4 ILL-ITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEE-EETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             EEE-EECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccC--CeeeEEEecCCCHHHHHHHHHHH
Confidence            444 45567777766654    488       89999999887766655554333  36888999987642         


Q ss_pred             --CCCCccEEEECCCCC
Q psy13204        126 --PSLQGDVVFLSPPWG  140 (189)
Q Consensus       126 --~~~~~D~v~~npp~~  140 (189)
                        ....+|+++.|.-..
T Consensus        81 ~~~~g~id~li~~Ag~~   97 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVG   97 (244)
T ss_dssp             HHHTSCCSEEEECCCCC
T ss_pred             HHhCCCCCEEEEcCCcC
Confidence              113689999986543

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=84.62  E-value=5.8  Score=29.60  Aligned_cols=74  Identities=14%  Similarity=0.078  Sum_probs=49.7

Q ss_pred             CCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++ +..|+|+++..+++.    |.+|+.++.+++..+.+.+.+...+.  ++.++.+|+.+..           ...
T Consensus        44 ~k~vl-ITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~~  120 (285)
T 2c07_A           44 NKVAL-VTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEHK  120 (285)
T ss_dssp             SCEEE-EESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCEEE-EECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC--ceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence            45565 445667777766554    88999999888777665555544343  6788889887642           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .+|+++.|.-..
T Consensus       121 ~id~li~~Ag~~  132 (285)
T 2c07_A          121 NVDILVNNAGIT  132 (285)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986543

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=84.58  E-value=5.7  Score=29.45  Aligned_cols=74  Identities=12%  Similarity=-0.054  Sum_probs=49.8

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeC-CHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDI-DPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.| |+|+++..++    +.|++|+..+. +++..+...+.+...+.  ++.++.+|+.+..           ..
T Consensus        28 ~k~vlVTG-as~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~v~~~~~~~~~~~  104 (269)
T 4dmm_A           28 DRIALVTG-ASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGG--EAFAVKADVSQESEVEALFAAVIERW  104 (269)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            56666555 5566555554    45999998887 77777666666655553  7888999987743           11


Q ss_pred             CCccEEEECCCCC
Q psy13204        128 LQGDVVFLSPPWG  140 (189)
Q Consensus       128 ~~~D~v~~npp~~  140 (189)
                      ...|+++.|.-..
T Consensus       105 g~id~lv~nAg~~  117 (269)
T 4dmm_A          105 GRLDVLVNNAGIT  117 (269)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            2689999987544

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=84.58  E-value=1.3  Score=31.14  Aligned_cols=42  Identities=14%  Similarity=0.181  Sum_probs=29.5

Q ss_pred             CCCCCEEEEecC--CCChHHHHHHH-hCCeEEEEeCCHHHHHHHH
Q psy13204         61 CKASDVVIDGFC--GCGGNTIQFAA-VCQKVISIDIDPAKLRLAQ  102 (189)
Q Consensus        61 ~~~~~~vlD~g~--G~G~~~~~~~~-~~~~v~~vD~~~~~~~~a~  102 (189)
                      ++++++|+-.|+  |.|.....+++ .|++|++++.+++..+.++
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            345889999984  34444444444 4899999999988776653

>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*

Probab=84.57  E-value=0.74  Score=34.95  Aligned_cols=30  Identities=17%  Similarity=0.337  Sum_probs=23.6

Q ss_pred             CceEEEeCCcccCCC-CCCccEEEECCCCCC
Q psy13204        112 HKIQFIQGDFFALAP-SLQGDVVFLSPPWGG  141 (189)
Q Consensus       112 ~~~~~~~~d~~~~~~-~~~~D~v~~npp~~~  141 (189)
                      .++++.+.|+.+... -..-|+|++||||..
T Consensus       156 ~~v~i~~~Df~~~i~~~~~~~fvY~DPPY~~  186 (278)
T 2g1p_A          156 QNAFFYCESYADSMARADDSSVVYCDPPYAP  186 (278)
T ss_dssp             GGEEEEECCHHHHHTTCCTTEEEEECCSCCC
T ss_pred             CCcEEEeCCHHHHHHhcCCCCEEEeCCcccc
Confidence            389999999988652 235589999999975

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=84.24  E-value=6.4  Score=28.92  Aligned_cols=73  Identities=14%  Similarity=0.067  Sum_probs=49.2

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++..+...+.+...+  .++.++.+|+.+..           .-.
T Consensus         7 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            7 GKVCLVTG-AGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            55666444 55666665544    49999999999887776655554444  36888889987642           012


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      .+|+++.|.-.
T Consensus        84 ~id~lv~nAg~   94 (262)
T 1zem_A           84 KIDFLFNNAGY   94 (262)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999998644

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=84.22  E-value=3.7  Score=30.04  Aligned_cols=72  Identities=10%  Similarity=-0.080  Sum_probs=47.3

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..++    +.|++|+.++.+++..+...+...     .+..++..|..+..           ...
T Consensus         9 gk~~lVTG-as~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (248)
T 3op4_A            9 GKVALVTG-ASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG-----DNGKGMALNVTNPESIEAVLKAITDEFG   82 (248)
T ss_dssp             TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----ccceEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            56666555 4555555554    459999999999887766554442     25677888877643           113


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        83 ~iD~lv~nAg~~~   95 (248)
T 3op4_A           83 GVDILVNNAGITR   95 (248)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            6899999865543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=84.22  E-value=10  Score=27.74  Aligned_cols=75  Identities=13%  Similarity=0.129  Sum_probs=48.1

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++..+.+.+.+.......++.++.+|..+..           ...
T Consensus         7 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            7 GKLAVVTA-GSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            45565555 55666665544    499999999998877665555443200026788888887642           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                       .|+++.|.-..
T Consensus        86 -id~lv~~Ag~~   96 (260)
T 2z1n_A           86 -ADILVYSTGGP   96 (260)
T ss_dssp             -CSEEEECCCCC
T ss_pred             -CCEEEECCCCC
Confidence             89999987644

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=84.10  E-value=1.5  Score=34.04  Aligned_cols=67  Identities=19%  Similarity=0.146  Sum_probs=42.8

Q ss_pred             hCCCCCEEEEecCCC-ChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEEC
Q psy13204         60 RCKASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  136 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~-G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~n  136 (189)
                      .++++++|+=.|+|. |..++.+++. |++|++++.+++..+.+++    .|.  .. ++ .+.... .. .+|+|+-.
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa--~~-v~-~~~~~~-~~-~~D~vid~  241 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGV--KH-FY-TDPKQC-KE-ELDFIIST  241 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTC--SE-EE-SSGGGC-CS-CEEEEEEC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCC--Ce-ec-CCHHHH-hc-CCCEEEEC
Confidence            345588998888763 5566666665 8899999999988877643    443  22 22 333222 22 68887753

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=84.05  E-value=7.6  Score=28.23  Aligned_cols=73  Identities=16%  Similarity=0.107  Sum_probs=49.7

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------C-----CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----SL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~-----~~  128 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.++...+...+.+...+.  ++.++.+|+.+..      .     ..
T Consensus        13 ~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (260)
T 3awd_A           13 NRVAIVTG-GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGH--DVSSVVMDVTNTESVQNAVRSVHEQEG   89 (260)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            55666444 56776666654    489999999998877665555554443  6888999987642      0     12


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      .+|+++.|.-.
T Consensus        90 ~id~vi~~Ag~  100 (260)
T 3awd_A           90 RVDILVACAGI  100 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999988654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=84.04  E-value=2.1  Score=33.42  Aligned_cols=42  Identities=26%  Similarity=0.137  Sum_probs=31.5

Q ss_pred             CCCCEEEEecCCC-ChHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q psy13204         62 KASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        62 ~~~~~vlD~g~G~-G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~  103 (189)
                      +++++|+=.|+|. |..++.+++. |++|++++.+++.++.+++
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH
Confidence            4488999888653 5566666654 8899999999988877643

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=83.95  E-value=7.6  Score=28.56  Aligned_cols=76  Identities=16%  Similarity=0.009  Sum_probs=49.5

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++..+.+.+.+.......++.++.+|..+..           ...
T Consensus        13 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           13 DRVVLITG-GGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            56666555 45666655544    599999999999877666555544311136788889987642           012


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .+|+++.|.-..
T Consensus        92 ~id~lv~nAg~~  103 (267)
T 1iy8_A           92 RIDGFFNNAGIE  103 (267)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCcC
Confidence            689999986543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=83.70  E-value=4  Score=29.90  Aligned_cols=71  Identities=20%  Similarity=0.118  Sum_probs=47.6

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|++ |+++..+    ++.|++|+.++.+++.++...+..   +  .++.++.+|+.+..           ...
T Consensus         9 ~k~vlITGas-~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   82 (261)
T 3n74_A            9 GKVALITGAG-SGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---G--DAALAVAADISKEADVDAAVEAALSKFG   82 (261)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---C--CceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            5666656655 4544444    445999999999998776655433   2  37888999987643           112


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        83 ~id~li~~Ag~~   94 (261)
T 3n74_A           83 KVDILVNNAGIG   94 (261)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCccC
Confidence            689999987544

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=83.64  E-value=5.4  Score=29.35  Aligned_cols=73  Identities=11%  Similarity=-0.037  Sum_probs=49.3

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEE-eCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISI-DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.| |+|+++..+++    .|++|+.. +.+++..+...+.+...+.  ++.++.+|+.+..           ..
T Consensus         4 ~k~vlVTG-as~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (258)
T 3oid_A            4 NKCALVTG-SSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV--KVLVVKANVGQPAKIKEMFQQIDETF   80 (258)
T ss_dssp             CCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEec-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45555444 55666665544    48998886 8888877776666655443  7889999987643           11


Q ss_pred             CCccEEEECCCC
Q psy13204        128 LQGDVVFLSPPW  139 (189)
Q Consensus       128 ~~~D~v~~npp~  139 (189)
                      ...|+++.|.-.
T Consensus        81 g~id~lv~nAg~   92 (258)
T 3oid_A           81 GRLDVFVNNAAS   92 (258)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            367999998753

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=83.60  E-value=3.6  Score=30.72  Aligned_cols=73  Identities=18%  Similarity=0.089  Sum_probs=47.3

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++..+...+.+...   .++.++.+|+.+..           ...
T Consensus        29 ~k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           29 GRIALVTG-GSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY---GDCQAIPADLSSEAGARRLAQALGELSA  104 (276)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTS---SCEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            56666555 55666655544    4899999999987766554444322   26777888876642           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      .+|+++.|.-..
T Consensus       105 ~iD~lvnnAg~~  116 (276)
T 2b4q_A          105 RLDILVNNAGTS  116 (276)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986543

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=83.31  E-value=2.3  Score=32.21  Aligned_cols=75  Identities=16%  Similarity=0.014  Sum_probs=50.4

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..+++    .|++|+.++.+++..+.+.+.+...+. .++.++.+|+.+..           ...
T Consensus        41 ~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           41 ARSVLVTG-GTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGA-GNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSS-SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-CcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            56666555 55665555544    599999999998877766665554442 37888999987642           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus       119 ~iD~lvnnAg~~  130 (293)
T 3rih_A          119 ALDVVCANAGIF  130 (293)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            679999986543

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=83.31  E-value=2.1  Score=31.83  Aligned_cols=70  Identities=23%  Similarity=0.145  Sum_probs=44.6

Q ss_pred             CEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCc
Q psy13204         65 DVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQG  130 (189)
Q Consensus        65 ~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~  130 (189)
                      ++||=-|++.|.   .+..+++.|++|+.+|.+++..+...+    .+  .++..+.+|..+..           .-...
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~----~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK----ER--PNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT----TC--TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hc--CCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            455544554443   333445569999999999876654322    22  37788899987643           12378


Q ss_pred             cEEEECCCCC
Q psy13204        131 DVVFLSPPWG  140 (189)
Q Consensus       131 D~v~~npp~~  140 (189)
                      |+++.|.-..
T Consensus        77 DiLVNNAG~~   86 (247)
T 3ged_A           77 DVLVNNACRG   86 (247)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999987443

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=83.21  E-value=4.4  Score=29.41  Aligned_cols=73  Identities=16%  Similarity=0.032  Sum_probs=48.7

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCC-HHHHHHHHHHHHHhCCCCceEEEeCCcccCC------C-----C
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDID-PAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----S  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~-----~  127 (189)
                      +++++ +..|+|+++..+++    .|++|+.++.+ ++..+.+.+.+...+  .++.++.+|+.+..      .     .
T Consensus         7 ~k~vl-VTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (258)
T 3afn_B            7 GKRVL-ITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADG--GDAAFFAADLATSEACQQLVDEFVAKF   83 (258)
T ss_dssp             TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            55666 55566777766655    48999999988 655555544444444  37888999987643      0     1


Q ss_pred             CCccEEEECCCC
Q psy13204        128 LQGDVVFLSPPW  139 (189)
Q Consensus       128 ~~~D~v~~npp~  139 (189)
                      ..+|+++.|.-.
T Consensus        84 g~id~vi~~Ag~   95 (258)
T 3afn_B           84 GGIDVLINNAGG   95 (258)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            268999998654

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=83.00  E-value=1.7  Score=35.12  Aligned_cols=44  Identities=9%  Similarity=0.056  Sum_probs=34.0

Q ss_pred             CCEEEEecCCCChHHHHHHHh----C---CeEEEEeCCHHHHHHHHHHHHH
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV----C---QKVISIDIDPAKLRLAQHNASV  107 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~----~---~~v~~vD~~~~~~~~a~~~~~~  107 (189)
                      ...++|+|+|+|.+..-+.+.    +   .+++.||+|+...+.-++++..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            468999999999988777543    2   3688999999887776666653

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=82.72  E-value=3.3  Score=31.53  Aligned_cols=41  Identities=15%  Similarity=-0.053  Sum_probs=31.0

Q ss_pred             CCCCEEEEecCC-CChHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q psy13204         62 KASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        62 ~~~~~vlD~g~G-~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~  103 (189)
                      +++++|+=.|+| .|.+++.+++. |++|++++ +++..+.+++
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~  183 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAK  183 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHH
Confidence            348899888885 36666667665 88999999 8887777654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=82.61  E-value=4.2  Score=29.70  Aligned_cols=71  Identities=18%  Similarity=0.090  Sum_probs=47.5

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|+ +|+++..++    +.|++|+.++.+++..+......   +  .++.++.+|+.+..           ...
T Consensus         6 gk~vlVTGa-s~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   79 (247)
T 3rwb_A            6 GKTALVTGA-AQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---G--KKARAIAADISDPGSVKALFAEIQALTG   79 (247)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            566665554 455555554    45999999999998776654443   3  37888888887643           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        80 ~id~lv~nAg~~   91 (247)
T 3rwb_A           80 GIDILVNNASIV   91 (247)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986554

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=82.60  E-value=13  Score=27.76  Aligned_cols=58  Identities=10%  Similarity=-0.103  Sum_probs=39.8

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEe-CCHHHHHHHHHHHH-HhCCCCceEEEeCCcccC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISID-IDPAKLRLAQHNAS-VYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD-~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~  124 (189)
                      +++++=.| |+|+++..+++    .|++|+.++ .+++.++.+.+.+. ..+  .++.++.+|+.+.
T Consensus         9 ~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~   72 (291)
T 1e7w_A            9 VPVALVTG-AAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNV   72 (291)
T ss_dssp             CCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSS
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcC--CeeEEEEeecCCc
Confidence            55665444 55666666554    499999999 99887776665554 333  3788888888764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=82.59  E-value=4  Score=31.93  Aligned_cols=44  Identities=32%  Similarity=0.201  Sum_probs=32.7

Q ss_pred             hCCCCCEEEEecCCC-ChHHHHHHHh-CC-eEEEEeCCHHHHHHHHH
Q psy13204         60 RCKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH  103 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~-G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~  103 (189)
                      .++++++|+=.|+|. |.+++.+++. |+ +|+++|.+++..+.+++
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  225 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE  225 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            345688888888753 5566666665 77 89999999988877654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=82.51  E-value=4.8  Score=30.01  Aligned_cols=71  Identities=15%  Similarity=0.030  Sum_probs=47.7

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++.+++.++.+.+..   +  .++.++.+|+.+..           ...
T Consensus        28 ~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  101 (272)
T 4dyv_A           28 KKIAIVTG-AGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI---G--DDALCVPTDVTDPDSVRALFTATVEKFG  101 (272)
T ss_dssp             CCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---T--SCCEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            55665444 5566555554    45999999999988776655443   2  37788999987643           112


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus       102 ~iD~lVnnAg~~  113 (272)
T 4dyv_A          102 RVDVLFNNAGTG  113 (272)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986553

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=82.48  E-value=3.6  Score=29.61  Aligned_cols=67  Identities=13%  Similarity=0.014  Sum_probs=43.9

Q ss_pred             ecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--------CCCCccEEEECC
Q psy13204         70 GFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--------PSLQGDVVFLSP  137 (189)
Q Consensus        70 ~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~D~v~~np  137 (189)
                      +..|+|+++..+++    .|++|+.++.+++.++.+.+..     ..++.++.+|..+..        -...+|+++.|.
T Consensus         6 VTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~A   80 (230)
T 3guy_A            6 ITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSA   80 (230)
T ss_dssp             EESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECC
T ss_pred             EecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeC
Confidence            34455666666554    4899999999998776544332     246788888877642        122459999887


Q ss_pred             CCCC
Q psy13204        138 PWGG  141 (189)
Q Consensus       138 p~~~  141 (189)
                      -...
T Consensus        81 g~~~   84 (230)
T 3guy_A           81 GSGY   84 (230)
T ss_dssp             CCCC
T ss_pred             CcCC
Confidence            5443

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=82.46  E-value=9  Score=28.03  Aligned_cols=71  Identities=15%  Similarity=0.026  Sum_probs=49.0

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----------C--C
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------P--S  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~--~  127 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++..+.+.+.+...+  .++.++.+|+.+..          .  .
T Consensus         5 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   81 (260)
T 2qq5_A            5 GQVCVVTG-ASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG--GQCVPVVCDSSQESEVRSLFEQVDREQQ   81 (260)
T ss_dssp             TCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS--SEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            45555444 56666666654    49999999999887776665555444  37888889987642          0  2


Q ss_pred             CCccEEEECC
Q psy13204        128 LQGDVVFLSP  137 (189)
Q Consensus       128 ~~~D~v~~np  137 (189)
                      ..+|+++.|.
T Consensus        82 g~id~lvnnA   91 (260)
T 2qq5_A           82 GRLDVLVNNA   91 (260)
T ss_dssp             TCCCEEEECC
T ss_pred             CCceEEEECC
Confidence            4679999987

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=82.38  E-value=2.9  Score=32.41  Aligned_cols=43  Identities=16%  Similarity=0.020  Sum_probs=31.8

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-CC-eEEEEeCCHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH  103 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~  103 (189)
                      ++++++|+=.|+|. |.+++.+++. |+ +|+++|.+++.++.+++
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  209 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE  209 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            45588888888753 5566666665 77 79999999988877654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=82.26  E-value=5.6  Score=29.22  Aligned_cols=77  Identities=5%  Similarity=-0.150  Sum_probs=49.6

Q ss_pred             CCEEEEecCCC--Ch---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGC--GG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~--G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      +++++=.|++.  |.   ++..+++.|++|+.++.++...+.+.+.....+- .++.++.+|+.+..           ..
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            56777667552  22   4444556699999999887655555444443332 26889999987753           01


Q ss_pred             CCccEEEECCCCCC
Q psy13204        128 LQGDVVFLSPPWGG  141 (189)
Q Consensus       128 ~~~D~v~~npp~~~  141 (189)
                      ..+|+++.|.-...
T Consensus        86 g~id~li~~Ag~~~   99 (266)
T 3oig_A           86 GVIHGIAHCIAFAN   99 (266)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCeeEEEEcccccc
Confidence            36899999876543

>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*

Probab=82.22  E-value=0.94  Score=33.97  Aligned_cols=46  Identities=17%  Similarity=0.334  Sum_probs=36.3

Q ss_pred             HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHH
Q psy13204         52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL  100 (189)
Q Consensus        52 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~  100 (189)
                      .+...+...+++..+.+|+++|+|...+.+..  . ++.-|++++.+..
T Consensus        13 ~l~~~i~~~lP~~~~yvEpF~GggaV~~~~~~--~-~viNDin~~li~~   58 (259)
T 1yf3_A           13 SLLPELKSHFPKYNRFVDLFCGGLSVSLNVNG--P-VLANDIQEPIIEM   58 (259)
T ss_dssp             TTHHHHHHTCCCCSEEEETTCTTCTTGGGSCS--S-EEEECSCHHHHHH
T ss_pred             HHHHHHHHhCcccCeEEEecCCccHHHHhccc--c-EEEecCChHHHHH
Confidence            45666777777778999999999998776543  4 8899999987754

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=82.10  E-value=3.4  Score=31.85  Aligned_cols=42  Identities=29%  Similarity=0.284  Sum_probs=33.1

Q ss_pred             CCCCCEEEEecC--CCChHHHHHHHh-CCeEEEEeCCHHHHHHHH
Q psy13204         61 CKASDVVIDGFC--GCGGNTIQFAAV-CQKVISIDIDPAKLRLAQ  102 (189)
Q Consensus        61 ~~~~~~vlD~g~--G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~  102 (189)
                      ++++++|+-.|+  |.|..+..+++. |++|++++.+++.++.++
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~  208 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK  208 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            344889999997  566777777664 889999999998887775

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=82.02  E-value=15  Score=28.07  Aligned_cols=58  Identities=10%  Similarity=-0.093  Sum_probs=40.2

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEe-CCHHHHHHHHHHHH-HhCCCCceEEEeCCcccC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISID-IDPAKLRLAQHNAS-VYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD-~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~  124 (189)
                      ++++| +..|+|+++..+++    .|++|+.++ .+++..+.+.+.+. ..+  .++.++.+|+.+.
T Consensus        46 ~k~~l-VTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~d~  109 (328)
T 2qhx_A           46 VPVAL-VTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNV  109 (328)
T ss_dssp             CCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSS
T ss_pred             CCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcC--CeEEEEEeeCCCc
Confidence            55665 45556666666654    499999999 99887776665554 333  3788888988764

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=81.91  E-value=5.8  Score=28.99  Aligned_cols=64  Identities=16%  Similarity=0.059  Sum_probs=41.9

Q ss_pred             cCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCccEEEE
Q psy13204         71 FCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGDVVFL  135 (189)
Q Consensus        71 g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D~v~~  135 (189)
                      ..|+|+++..+    ++.|++|+.++.+++.++...+.+   +  .++.++.+|..+..           .....|+++.
T Consensus         6 TGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            6 TGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---G--DNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             TTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             ECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---c--CceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            34455555554    445999999999987766544333   2  36788888877632           1236899999


Q ss_pred             CCCC
Q psy13204        136 SPPW  139 (189)
Q Consensus       136 npp~  139 (189)
                      |.-.
T Consensus        81 nAg~   84 (248)
T 3asu_A           81 NAGL   84 (248)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            8654

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=81.79  E-value=8.2  Score=28.02  Aligned_cols=75  Identities=13%  Similarity=-0.052  Sum_probs=48.7

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeC-CHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDI-DPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      +++++ +..|+|+++..+++    .|++|+.++. +++..+...+.+...+.  ++.++.+|..+..           ..
T Consensus         4 ~k~~l-VTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            4 TKSAL-VTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGV--DSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             SCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTS--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34454 44556666666554    4999988876 55666666655655553  7888899987643           11


Q ss_pred             CCccEEEECCCCCC
Q psy13204        128 LQGDVVFLSPPWGG  141 (189)
Q Consensus       128 ~~~D~v~~npp~~~  141 (189)
                      ...|+++.|.-...
T Consensus        81 g~id~lv~nAg~~~   94 (246)
T 3osu_A           81 GSLDVLVNNAGITR   94 (246)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            26899999875543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=81.79  E-value=3.7  Score=31.88  Aligned_cols=44  Identities=25%  Similarity=0.243  Sum_probs=33.0

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-CCe-EEEEeCCHHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-CQK-VISIDIDPAKLRLAQHN  104 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~~~-v~~vD~~~~~~~~a~~~  104 (189)
                      ++++++|+=.|+|. |.+++.+++. |++ |+++|.+++..+.+++.
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            45588887788753 5566666665 776 99999999998888754

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=81.76  E-value=3.4  Score=31.90  Aligned_cols=44  Identities=25%  Similarity=0.302  Sum_probs=33.4

Q ss_pred             hCCCCCEEEEecCCC-ChHHHHHHHh--CCeEEEEeCCHHHHHHHHH
Q psy13204         60 RCKASDVVIDGFCGC-GGNTIQFAAV--CQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~-G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~  103 (189)
                      .++++++|+=.|+|. |..++.+++.  +.+|+++|.+++..+.+++
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            345688998888764 6666777664  6799999999988887653

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=81.66  E-value=5.1  Score=29.71  Aligned_cols=71  Identities=13%  Similarity=0.006  Sum_probs=47.5

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++.+++.++.+.+.   .+  .++.++.+|+.+..           ...
T Consensus        27 gk~vlVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (266)
T 3grp_A           27 GRKALVTG-ATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAAD---LG--KDVFVFSANLSDRKSIKQLAEVAEREME  100 (266)
T ss_dssp             TCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---HC--SSEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC--CceEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            56666555 5555555554    4599999999998876655333   23  37888999987643           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus       101 ~iD~lvnnAg~~  112 (266)
T 3grp_A          101 GIDILVNNAGIT  112 (266)
T ss_dssp             SCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986544

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=81.56  E-value=4.8  Score=29.54  Aligned_cols=75  Identities=8%  Similarity=-0.163  Sum_probs=48.2

Q ss_pred             CCEEEEecCC-CChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCG-CGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G-~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      +++||=.|++ +|+++..+    ++.|++|+.++.+....+.+.+.....+   .+.++.+|+.+..           ..
T Consensus        14 ~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~   90 (271)
T 3ek2_A           14 GKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKTHW   90 (271)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            7788877764 25555554    4459999999988654444444333332   4778888887643           12


Q ss_pred             CCccEEEECCCCCC
Q psy13204        128 LQGDVVFLSPPWGG  141 (189)
Q Consensus       128 ~~~D~v~~npp~~~  141 (189)
                      ...|+++.|.-...
T Consensus        91 g~id~lv~nAg~~~  104 (271)
T 3ek2_A           91 DSLDGLVHSIGFAP  104 (271)
T ss_dssp             SCEEEEEECCCCCC
T ss_pred             CCCCEEEECCccCc
Confidence            36899999875543

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=81.55  E-value=14  Score=27.91  Aligned_cols=75  Identities=12%  Similarity=-0.081  Sum_probs=47.4

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEE-eCCcccCC--C--CCCccEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI-QGDFFALA--P--SLQGDVVF  134 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~--~--~~~~D~v~  134 (189)
                      +.+|+ +..|+|.++..+++    .|.+|++++.++...+..........- .+++++ .+|+.+..  .  -..+|+|+
T Consensus        11 ~~~vl-VTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi   88 (342)
T 1y1p_A           11 GSLVL-VTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP-GRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             TCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHST-TTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCEEE-EECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCC-CceEEEEecCCcChHHHHHHHcCCCEEE
Confidence            55666 45567777777654    489999999998765544333322111 367777 78887643  1  12589999


Q ss_pred             ECCCCC
Q psy13204        135 LSPPWG  140 (189)
Q Consensus       135 ~npp~~  140 (189)
                      .+....
T Consensus        89 h~A~~~   94 (342)
T 1y1p_A           89 HIASVV   94 (342)
T ss_dssp             ECCCCC
T ss_pred             EeCCCC
Confidence            876543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=81.48  E-value=8.2  Score=28.23  Aligned_cols=73  Identities=10%  Similarity=-0.056  Sum_probs=49.6

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------C------C
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P------S  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~------~  127 (189)
                      +++++ +..|+|+++..+++    .|++|+.++.+++..+.....+...+.  ++.++.+|..+..      .      .
T Consensus        14 ~k~vl-ITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   90 (266)
T 1xq1_A           14 AKTVL-VTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMFG   90 (266)
T ss_dssp             TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            55665 45556776666654    489999999998877666555554443  6788888877642      1      1


Q ss_pred             CCccEEEECCCC
Q psy13204        128 LQGDVVFLSPPW  139 (189)
Q Consensus       128 ~~~D~v~~npp~  139 (189)
                      ..+|+++.|.-.
T Consensus        91 ~~id~li~~Ag~  102 (266)
T 1xq1_A           91 GKLDILINNLGA  102 (266)
T ss_dssp             TCCSEEEEECCC
T ss_pred             CCCcEEEECCCC
Confidence            468999987644

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=81.05  E-value=12  Score=27.23  Aligned_cols=73  Identities=8%  Similarity=-0.029  Sum_probs=49.1

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=. .|+|+++..+++    .|++|+.++.+++..+...+.+...+.  ++.++.+|..+..           ...
T Consensus        14 ~k~vlVT-Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g   90 (260)
T 2zat_A           14 NKVALVT-ASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGL--SVTGTVCHVGKAEDRERLVAMAVNLHG   90 (260)
T ss_dssp             TCEEEES-SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEE-CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5566644 456666666654    489999999998877665555554443  6788888876532           012


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.|.-.
T Consensus        91 ~iD~lv~~Ag~  101 (260)
T 2zat_A           91 GVDILVSNAAV  101 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999988643

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=81.00  E-value=5.2  Score=30.10  Aligned_cols=74  Identities=14%  Similarity=-0.023  Sum_probs=47.5

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCC--HHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------C
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDID--PAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------P  126 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~  126 (189)
                      ++++|=.| |+|+++..++    +.|++|+.++.+  +...+.+.+.....+.  ++.++.+|+.+..           .
T Consensus        49 ~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~  125 (294)
T 3r3s_A           49 DRKALVTG-GDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGR--KAVLLPGDLSDESFARSLVHKAREA  125 (294)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTC--CEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHH
Confidence            56666555 4555555554    459999998886  3444555444554443  7888888887642           1


Q ss_pred             CCCccEEEECCCCC
Q psy13204        127 SLQGDVVFLSPPWG  140 (189)
Q Consensus       127 ~~~~D~v~~npp~~  140 (189)
                      ....|+++.|.-..
T Consensus       126 ~g~iD~lv~nAg~~  139 (294)
T 3r3s_A          126 LGGLDILALVAGKQ  139 (294)
T ss_dssp             HTCCCEEEECCCCC
T ss_pred             cCCCCEEEECCCCc
Confidence            13689999986543

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=80.95  E-value=4.4  Score=30.21  Aligned_cols=73  Identities=11%  Similarity=0.006  Sum_probs=45.1

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----------CCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~  129 (189)
                      ++++|=.|+ +|+++..++    +.|++|+.++.++...+ ....+...+  .++.++.+|..+..          ....
T Consensus        31 gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~g~  106 (273)
T 3uf0_A           31 GRTAVVTGA-GSGIGRAIAHGYARAGAHVLAWGRTDGVKE-VADEIADGG--GSAEAVVADLADLEGAANVAEELAATRR  106 (273)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSTHHHH-HHHHHHTTT--CEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCHHHHHH-HHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHhcCC
Confidence            666665554 455555544    45999999996654333 333333333  37888999987643          1136


Q ss_pred             ccEEEECCCCC
Q psy13204        130 GDVVFLSPPWG  140 (189)
Q Consensus       130 ~D~v~~npp~~  140 (189)
                      .|+++.|.-..
T Consensus       107 iD~lv~nAg~~  117 (273)
T 3uf0_A          107 VDVLVNNAGII  117 (273)
T ss_dssp             CCEEEECCCCC
T ss_pred             CcEEEECCCCC
Confidence            89999986544

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=80.94  E-value=7.9  Score=28.37  Aligned_cols=72  Identities=11%  Similarity=0.084  Sum_probs=48.8

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.| |+|+++..++    +.|++|+.++.+++.++...+..   +  .++.++.+|..+..           ...
T Consensus         8 gk~~lVTG-as~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (255)
T 4eso_A            8 GKKAIVIG-GTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQTLG   81 (255)
T ss_dssp             TCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            56666555 4555555554    45999999999998776655443   2  37888999987643           113


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        82 ~id~lv~nAg~~~   94 (255)
T 4eso_A           82 AIDLLHINAGVSE   94 (255)
T ss_dssp             SEEEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            6899999865543

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=80.68  E-value=8.4  Score=28.63  Aligned_cols=71  Identities=8%  Similarity=-0.093  Sum_probs=45.8

Q ss_pred             CEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         65 DVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      ++++=.| |+|+++..+    ++.|++|+.++.+++.++.....+...   .++.++.+|+.+..           ....
T Consensus        22 k~vlVTG-as~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   97 (272)
T 2nwq_A           22 STLFITG-ATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFAT   97 (272)
T ss_dssp             CEEEESS-TTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGSS
T ss_pred             cEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4566555 445544444    445999999999988776654444221   36788888887642           1135


Q ss_pred             ccEEEECCCC
Q psy13204        130 GDVVFLSPPW  139 (189)
Q Consensus       130 ~D~v~~npp~  139 (189)
                      .|+++.|.-.
T Consensus        98 iD~lvnnAG~  107 (272)
T 2nwq_A           98 LRGLINNAGL  107 (272)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            7999998654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=80.64  E-value=6.5  Score=29.41  Aligned_cols=71  Identities=17%  Similarity=0.015  Sum_probs=47.8

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------CCCCccE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDV  132 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~  132 (189)
                      +++++=.| |+|+++..+++    .|++|+.++.+++..+.+.+.+     ..++.++.+|+.+..       .-...|+
T Consensus        16 gk~vlVTG-as~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~   89 (291)
T 3rd5_A           16 QRTVVITG-ANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGVSGADV   89 (291)
T ss_dssp             TCEEEEEC-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred             CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            56666444 55666666554    4899999999987765543322     247899999987643       2236899


Q ss_pred             EEECCCCC
Q psy13204        133 VFLSPPWG  140 (189)
Q Consensus       133 v~~npp~~  140 (189)
                      ++.|.-..
T Consensus        90 lv~nAg~~   97 (291)
T 3rd5_A           90 LINNAGIM   97 (291)
T ss_dssp             EEECCCCC
T ss_pred             EEECCcCC
Confidence            99986543

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=80.56  E-value=6.2  Score=28.40  Aligned_cols=70  Identities=10%  Similarity=-0.077  Sum_probs=44.9

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------C-CCCccE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-SLQGDV  132 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~-~~~~D~  132 (189)
                      +++++ +..|+|+++..+++    .|++|++++.+++..+...+.   .   ..++++.+|..+..      . ...+|+
T Consensus         7 ~~~vl-VTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~---~---~~~~~~~~D~~~~~~~~~~~~~~~~id~   79 (244)
T 1cyd_A            7 GLRAL-VTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE---C---PGIEPVCVDLGDWDATEKALGGIGPVDL   79 (244)
T ss_dssp             TCEEE-EESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---S---TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred             CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---c---cCCCcEEecCCCHHHHHHHHHHcCCCCE
Confidence            45565 44566776666654    489999999998765543322   1   24567788877642      1 235899


Q ss_pred             EEECCCCC
Q psy13204        133 VFLSPPWG  140 (189)
Q Consensus       133 v~~npp~~  140 (189)
                      ++.|.-..
T Consensus        80 vi~~Ag~~   87 (244)
T 1cyd_A           80 LVNNAALV   87 (244)
T ss_dssp             EEECCCCC
T ss_pred             EEECCccc
Confidence            99986544

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=80.31  E-value=2.1  Score=33.52  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=31.0

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-CC-eEEEEeCCHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQ  102 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~  102 (189)
                      ++++++|+-.|+|. |..++.+++. |+ +|+++|.+++.++.++
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~  234 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK  234 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            34488998888753 5566666665 77 7999999998887764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=80.28  E-value=2.1  Score=33.49  Aligned_cols=42  Identities=14%  Similarity=0.030  Sum_probs=31.2

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-CC-eEEEEeCCHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQ  102 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~  102 (189)
                      ++++++|+=.|+|. |.+++.+++. |+ +|+++|.+++..+.++
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  233 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI  233 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence            34588998888753 5566666664 77 7999999998877764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=80.25  E-value=8.9  Score=28.43  Aligned_cols=74  Identities=11%  Similarity=-0.071  Sum_probs=47.5

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCC-HHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDID-PAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.|++ |+++..+    ++.|++|+.++.+ .+..+.....+...+.  ++.++.+|..+..           ..
T Consensus        31 gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (271)
T 3v2g_A           31 GKTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGG--RAVAIRADNRDAEAIEQAIRETVEAL  107 (271)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            6677666654 5555544    4459999888654 4555555555555553  7888999987643           11


Q ss_pred             CCccEEEECCCCC
Q psy13204        128 LQGDVVFLSPPWG  140 (189)
Q Consensus       128 ~~~D~v~~npp~~  140 (189)
                      ...|+++.|.-..
T Consensus       108 g~iD~lvnnAg~~  120 (271)
T 3v2g_A          108 GGLDILVNSAGIW  120 (271)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCcEEEECCCCC
Confidence            2689999987543

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=80.16  E-value=12  Score=27.88  Aligned_cols=75  Identities=17%  Similarity=0.291  Sum_probs=50.0

Q ss_pred             CCEEEEecCCCChHHHHHHHh---------CCeEEEEe-----CCH----------------------HHHHHHHH---H
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV---------CQKVISID-----IDP----------------------AKLRLAQH---N  104 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~---------~~~v~~vD-----~~~----------------------~~~~~a~~---~  104 (189)
                      ...|+|+|+-.|+.+..+++.         ..+++++|     ..+                      +.++...+   +
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            678999999999988887652         36899999     211                      11111111   1


Q ss_pred             HHHhCC-CCceEEEeCCcccCC-------CCCCccEEEECCC
Q psy13204        105 ASVYGV-SHKIQFIQGDFFALA-------PSLQGDVVFLSPP  138 (189)
Q Consensus       105 ~~~~~~-~~~~~~~~~d~~~~~-------~~~~~D~v~~npp  138 (189)
                      ....+. .++++++.+++.+.+       +..++|++++|--
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D  191 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD  191 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc
Confidence            112343 368999999998865       3347999999864

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=80.14  E-value=3.3  Score=31.05  Aligned_cols=74  Identities=14%  Similarity=-0.041  Sum_probs=47.6

Q ss_pred             CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHH-------HHHHHHHHHHHhCCCCceEEEeCCcccCC-------
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPA-------KLRLAQHNASVYGVSHKIQFIQGDFFALA-------  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~-------~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------  125 (189)
                      ++++|=.|+ +|+++..++    +.|++|+.++.+++       .++.+.+.....+.  ++.++.+|+.+..       
T Consensus         9 ~k~vlVTGa-s~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~   85 (285)
T 3sc4_A            9 GKTMFISGG-SRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG--QALPIVGDIRDGDAVAAAVA   85 (285)
T ss_dssp             TCEEEEESC-SSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTS--EEEEEECCTTSHHHHHHHHH
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHH
Confidence            566665554 455555554    45899999998865       34444444444443  7889999987643       


Q ss_pred             ----CCCCccEEEECCCCC
Q psy13204        126 ----PSLQGDVVFLSPPWG  140 (189)
Q Consensus       126 ----~~~~~D~v~~npp~~  140 (189)
                          .....|+++.|.-..
T Consensus        86 ~~~~~~g~id~lvnnAg~~  104 (285)
T 3sc4_A           86 KTVEQFGGIDICVNNASAI  104 (285)
T ss_dssp             HHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence                112689999986544

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=80.07  E-value=8.7  Score=28.30  Aligned_cols=75  Identities=12%  Similarity=-0.011  Sum_probs=47.8

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEe-CCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISID-IDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD-~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      +++++ +..|+|+++..+++    .|++|+.++ .+.+..+.........+  .++.++.+|+.+..           .-
T Consensus        25 ~k~vl-ITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           25 KRVAF-VTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAG--RDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             CCEEE-ETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            55665 44556666666554    489999988 56655555444444333  37889999987643           01


Q ss_pred             CCccEEEECCCCCC
Q psy13204        128 LQGDVVFLSPPWGG  141 (189)
Q Consensus       128 ~~~D~v~~npp~~~  141 (189)
                      ...|+++.|.-...
T Consensus       102 g~id~li~nAg~~~  115 (269)
T 3gk3_A          102 GKVDVLINNAGITR  115 (269)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             CCCCEEEECCCcCC
Confidence            26899999865543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=80.03  E-value=6.9  Score=30.07  Aligned_cols=43  Identities=30%  Similarity=0.352  Sum_probs=32.5

Q ss_pred             hCCCCCEEEEecCC-CChHHHHHHHh-CCeEEEEeCCHHHHHHHH
Q psy13204         60 RCKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQ  102 (189)
Q Consensus        60 ~~~~~~~vlD~g~G-~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~  102 (189)
                      .++++++|+-.|+| .|..++.+++. |++|++++.+++.++.++
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~  205 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK  205 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            34558899988875 45566666654 889999999998887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	7e-13
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	2e-10
d2oyra1	250	c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shi	6e-07
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	8e-07
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-06
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	4e-06
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	4e-06
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	4e-05
d2dula1	375	c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR	8e-05
d1o9ga_	249	c.66.1.29 (A:) rRNA methyltransferase AviRa {Strep	2e-04
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	4e-04
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	7e-04
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.001
d2f8la1	328	c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {	0.001
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	0.002
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	0.003
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	0.004

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 62.9 bits (152), Expect = 7e-13
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 1/113 (0%)

Query: 40  DATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKL 98
           D  +  +S    K    +A   K  ++V+D F G G  ++  A     KVI+I+ DP   
Sbjct: 84  DVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF 143

Query: 99  RLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSI 151
           +    N  +  V  ++     D          D + +       E+   + SI
Sbjct: 144 KFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVRTHEFIPKALSI 196

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 54.8 bits (131), Expect = 2e-10
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 49  TPEKVAQHIAS--RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS 106
           T  +V   I        +DV +D  CG GG T++ A   ++V +ID +P  +   + N  
Sbjct: 17  TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQ 76

Query: 107 VYGVSHKIQFIQGDFFALAPSL-QGDVVFLS 136
            +G+   +  ++GD       +   D+  + 
Sbjct: 77  RHGLGDNVTLMEGDAPEALCKIPDIDIAVVG 107

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

 Score = 45.8 bits (108), Expect = 6e-07
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 51  EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPA--------KLRLAQ 102
           E VA+ +  +      V+D   G G +    A+V  +V  ++ +P           R   
Sbjct: 76  EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYA 135

Query: 103 HNASVYGVSHKIQFIQGDFFALAPSL--QGDVVFLSPPWGGPEYARSSFSIDNIF 155
                  +  ++Q I          +  +  VV+L P +  P   +S+     + 
Sbjct: 136 DAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMF--PHKQKSALVKKEMR 188

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 45.9 bits (108), Expect = 8e-07
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 12/134 (8%)

Query: 52  KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS 111
           +  ++          V++ F   G  ++  AA   +V  +D     +  A+ N  + G+ 
Sbjct: 121 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLE 180

Query: 112 H-KIQFIQGDFFALAPSLQG-----DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLF 165
              I++I  D        +      D++   PP  G       + +            + 
Sbjct: 181 QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQL------FDHLPLML 234

Query: 166 QVARGISPNVGYYL 179
            + R I       L
Sbjct: 235 DICREILSPKALGL 248

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 42  TESWYSVTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAK 97
           +   Y  T   +   +         D+ +D   G G   +Q AA   C+    ++     
Sbjct: 128 SPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIP 187

Query: 98  LRLAQHNASVYGV--------SHKIQFIQGDFFAL---APSLQGDVVFLS 136
            + A+     +            +    +GDF +           V+F++
Sbjct: 188 AKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVN 237

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 43.4 bits (101), Expect = 4e-06
 Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 11/134 (8%)

Query: 57  IASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQ 115
           I    K  D V+D  CG GG+ +++      +   +DI    +  A+  A       K+ 
Sbjct: 18  IRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVF 77

Query: 116 FIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNV 175
           F   D +                    +   S FS    F          +         
Sbjct: 78  FRAQDSYGRHM----------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 127

Query: 176 GYYLPRTSDVFELF 189
           GY++        + 
Sbjct: 128 GYFIMTVPSRDVIL 141

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 4e-06
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 22/116 (18%)

Query: 19  DTVNNSTGLEYFEL--TLADADNDATESWYSVTP-------EKVAQHIASRC--KASDVV 67
             + +S G +Y      L D        +  +          K    I S       D V
Sbjct: 51  QILRSSFGKQYMLRRPALED--------YVVLMKRGTAITFPKDINMILSMMDINPGDTV 102

Query: 68  IDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 120
           ++   G GG ++  +       +VIS ++      LA+ N   +  S K+  ++  
Sbjct: 103 LEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW 158

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 4/84 (4%)

Query: 46  YSVTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLA 101
           Y          +  +C  K  D  +D   G G   +Q A    C      +I      L 
Sbjct: 197 YGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT 256

Query: 102 QHNASVYGVSHKIQFIQGDFFALA 125
                      K+  ++ +    +
Sbjct: 257 ILQYEELKKRCKLYGMRLNNVEFS 280

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 5/93 (5%)

Query: 52  KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNAS 106
             A +I  RC  +    +++   G G  +            +  ++ D   L+ A  N S
Sbjct: 72  IDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131

Query: 107 VYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 139
            +     ++  + D          D V    P 
Sbjct: 132 EFYDIGNVRTSRSDIADFISDQMYDAVIADIPD 164

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.0 bits (93), Expect = 8e-05
 Identities = 16/100 (16%), Positives = 25/100 (25%), Gaps = 18/100 (18%)

Query: 57  IASRCKASDVVIDGFCGCGGNTIQFA--AVCQKVISIDIDPAKLRLAQHNASVYGVSH-- 112
           +        +V+D     G   I+FA     ++V   DI      L + N  +       
Sbjct: 39  VLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR 98

Query: 113 ------------KIQFIQGDFFALAPSLQG--DVVFLSPP 138
                        I     D   L          + L P 
Sbjct: 99  ESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPF 138

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} Length = 249

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 9/63 (14%)

Query: 87  KVISIDIDPAKLRLA---QHNASVYGVSHKIQFIQGDFFAL------APSLQGDVVFLSP 137
           +           + A   +   +  G +        D F              DVV    
Sbjct: 116 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDL 175

Query: 138 PWG 140
           P+G
Sbjct: 176 PYG 178

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 12/122 (9%), Positives = 30/122 (24%), Gaps = 15/122 (12%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 119
           +  + V+      G      A +     + +++                   + I  +  
Sbjct: 55  RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLF 111

Query: 120 DFFALA-PSLQGDVVF-----LSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISP 173
           D       S   + V      ++          ++      F ++ G   +   AR I  
Sbjct: 112 DASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEF----FLKEKGEVVIMVKARSIDS 167

Query: 174 NV 175
             
Sbjct: 168 TA 169

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 37.0 bits (85), Expect = 7e-04
 Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 3/117 (2%)

Query: 62  KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 119
           K    ++      G      A +     V +I+  P  +R      +       I     
Sbjct: 73  KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDAN 132

Query: 120 DFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVG 176
                A  +   V  +      P  A         F ++GG   +   AR I     
Sbjct: 133 KPQEYAN-IVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD 188

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 16/77 (20%), Positives = 28/77 (36%)

Query: 58  ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 117
            + C+A   V+D   G G   + F+   Q+ I +D     + +A   A   GV +     
Sbjct: 11  TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQ 70

Query: 118 QGDFFALAPSLQGDVVF 134
                   P    D++ 
Sbjct: 71  GTAESLPFPDDSFDIIT 87

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 15/128 (11%)

Query: 30  FELTLADADNDATESWYSVTPEKVAQHIA------SRCKASDVVIDGFCGCGGNTIQFAA 83
            +L L        +  + +TP+ +   +A       + K +  ++D  CG          
Sbjct: 78  LQLALLKGMKHGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVIN 137

Query: 84  VCQK-------VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 136
             +           +D+D   + LA   A +     K+  +  D  A       DVV   
Sbjct: 138 QLELKGDVDVHASGVDVDDLLISLALVGADLQ--RQKMTLLHQDGLANLLVDPVDVVISD 195

Query: 137 PPWGGPEY 144
            P G    
Sbjct: 196 LPVGYYPD 203

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 14/98 (14%)

Query: 49  TPEKVAQHIASRCKASD-----VVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQ 102
           T    A +               VID   G G           + V + DIDP  +  A+
Sbjct: 29  TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAK 88

Query: 103 HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140
            N         + F+  D   ++         ++PP+G
Sbjct: 89  RNCG------GVNFMVADVSEISGKYD--TWIMNPPFG 118

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 65  DVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 123
            VV+D  CG G  ++  A A  +KV+ +D     L  A     +  +   I  I+G    
Sbjct: 37  KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEI-LYQAMDIIRLNKLEDTITLIKGKIEE 95

Query: 124 LAPSLQGDVVFLSPPWG 140
           +   ++   V +S   G
Sbjct: 96  VHLPVEKVDVIISEWMG 112

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 9/82 (10%)

Query: 67  VIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
            ID   G         A       ++ ++D      A+ N     +S  I+ ++     L
Sbjct: 65  GIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL 124

Query: 125 -------APSLQGDVVFLSPPW 139
                     +  D    +PP+
Sbjct: 125 LMDALKEESEIIYDFCMCNPPF 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.75
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.74
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.73
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.72
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.72
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.72
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.72
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.71
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.7
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.7
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.69
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.67
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.66
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.64
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.63
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.62
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.62
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.62
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.61
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.61
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.6
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.58
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.58
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.57
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.55
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.55
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.54
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.48
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.46
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.46
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.45
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.44
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.44
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.43
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.43
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.43
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.42
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.42
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	99.4
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.4
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.38
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.38
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.36
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.35
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.34
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.33
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.33
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.31
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.3
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.3
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.28
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.27
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.27
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.26
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	99.25
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.25
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.25
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.22
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.21
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.2
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.2
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.2
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	99.2
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.18
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.15
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	99.15
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	99.13
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.12
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	99.1
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	99.1
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.09
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.05
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.03
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.03
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.96
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.94
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.9
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.9
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.86
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.8
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.75
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	98.75
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.74
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.7
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	98.68
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.55
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.53
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.53
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.48
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.46
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.46
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.42
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	98.36
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.35
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.32
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.25
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	98.23
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	98.2
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.97
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.86
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.71
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.54
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.53
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.36
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.29
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.74
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.68
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.97
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.7
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.42
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	95.14
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.01
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.96
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.85
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.8
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.72
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.54
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.27
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.24
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.14
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.07
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.0
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.84
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.7
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	93.64
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	93.41
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.37
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.27
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	93.22
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.21
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.13
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	92.92
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.89
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.84
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	92.45
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.29
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	92.24
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.96
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	91.87
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.86
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.7
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	91.69
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.68
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.65
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	91.59
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.48
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.44
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	91.33
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	91.32
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.07
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	90.79
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.69
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.66
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	90.45
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.37
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.31
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.93
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.8
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.74
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	89.61
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.58
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.15
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	89.11
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	88.95
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	88.82
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.67
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	88.03
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	87.93
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	87.64
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	87.49
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	86.96
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	86.95
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	86.03
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	86.0
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	85.68
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	85.63
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	85.38
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	85.16
d1yf3a1	259	DNA methylase T4DAM {Bacteriophage T4 [TaxId: 1066	85.15
d2dpma_	275	DNA methylase DpnM {Streptococcus pneumoniae [TaxI	85.13
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	85.06
d2dpma_	275	DNA methylase DpnM {Streptococcus pneumoniae [TaxI	84.74
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	84.22
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	84.08
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	83.91
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	83.87
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	83.29
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	83.26
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	82.57
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	80.92
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	80.7

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.75  E-value=1.9e-18  Score=120.51  Aligned_cols=117  Identities=15%  Similarity=0.229  Sum_probs=86.3

Q ss_pred             HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCC
Q psy13204         52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSL  128 (189)
Q Consensus        52 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~  128 (189)
                      .+...+...++ +.+|||+|||+|.++++++.+|+ +|+++|.++.+++.+++|+...++.++++++++|+.+..  ...
T Consensus         4 ~~fn~l~~~~~-g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~   82 (152)
T d2esra1           4 AIFNMIGPYFN-GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG   82 (152)
T ss_dssp             HHHHHHCSCCC-SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred             HHHHHHHhhCC-CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccccc
Confidence            33444433333 89999999999999999988865 899999999999999999999998778999999998865  557


Q ss_pred             CccEEEECCCCCCCccccccc--cccccCcCCCCchhHHHHhhhc
Q psy13204        129 QGDVVFLSPPWGGPEYARSSF--SIDNIFPEQGGGRRLFQVARGI  171 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~~~~--~~~~~l~~~~~g~~~~~~~~~~  171 (189)
                      +||+|++||||..........  .-..++.+  ++..++++....
T Consensus        83 ~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~--~g~iiiE~~~~~  125 (152)
T d2esra1          83 RFDLVFLDPPYAKETIVATIEALAAKNLLSE--QVMVVCETDKTV  125 (152)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTTCEEE--EEEEEEEEETTC
T ss_pred             ccceeEechhhccchHHHHHHHHHHCCCcCC--CeEEEEEeCCCC
Confidence            899999999997533333111  11234432  356555554433

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=3.9e-18  Score=121.07  Aligned_cols=94  Identities=18%  Similarity=0.312  Sum_probs=74.6

Q ss_pred             cccChHHHH----HHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc
Q psy13204         46 YSVTPEKVA----QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF  121 (189)
Q Consensus        46 ~~~~~~~~~----~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~  121 (189)
                      ..++++.+.    .++...+..+.+|||+|||+|.++++++.+|++++++|.|+.+++.+++|+..+++..  ++...+.
T Consensus        20 ~Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~--~v~~~~~   97 (171)
T d1ws6a1          20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGA--RVVALPV   97 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCC--EEECSCH
T ss_pred             CCCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhcccc--ceeeeeh
Confidence            355554444    4555566669999999999999999999999999999999999999999999999844  4454544


Q ss_pred             ccCC-----CCCCccEEEECCCCCC
Q psy13204        122 FALA-----PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       122 ~~~~-----~~~~~D~v~~npp~~~  141 (189)
                      ..+.     ...+||+|++||||+.
T Consensus        98 d~~~~~~~~~~~~fD~If~DPPY~~  122 (171)
T d1ws6a1          98 EVFLPEAKAQGERFTVAFMAPPYAM  122 (171)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCTTS
T ss_pred             hcccccccccCCccceeEEcccccc
Confidence            3321     5568999999999985

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=1.7e-17  Score=120.70  Aligned_cols=75  Identities=23%  Similarity=0.363  Sum_probs=67.8

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      |.+|||+|||+|.+++.++..|+ +|+|+|+++.+++.|++|+..++.  +.+++++|..++  ...||+|++||||...
T Consensus        47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~--~~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF--NSRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC--CCCCSEEEECCCCSSS
T ss_pred             CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh--CCcCcEEEEcCccccc
Confidence            88999999999999999988875 899999999999999999988886  789999999876  4679999999999753

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.72  E-value=1.6e-17  Score=119.01  Aligned_cols=127  Identities=20%  Similarity=0.251  Sum_probs=96.0

Q ss_pred             CCcccccChHHHHHHHHHhCCC---CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Q psy13204         42 TESWYSVTPEKVAQHIASRCKA---SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFI  117 (189)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~---~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  117 (189)
                      ...-..++++.+.+.+...+..   +.+|||++||+|.++++++.+|+ +|+++|.++.+++.+++|+...+...+++++
T Consensus        17 ~~~~~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~   96 (182)
T d2fhpa1          17 DGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVR   96 (182)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             CCCCcCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Confidence            3344566777777777666543   89999999999999999999877 5999999999999999999998886789999


Q ss_pred             eCCcccCC-----CCCCccEEEECCCCCCCccccccccc--cccCcCCCCchhHHHHhhh
Q psy13204        118 QGDFFALA-----PSLQGDVVFLSPPWGGPEYARSSFSI--DNIFPEQGGGRRLFQVARG  170 (189)
Q Consensus       118 ~~d~~~~~-----~~~~~D~v~~npp~~~~~~~~~~~~~--~~~l~~~~~g~~~~~~~~~  170 (189)
                      ++|+.++.     ....||+|++||||....+......+  ..++.+  +++.++|+...
T Consensus        97 ~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~--~giIi~E~~~~  154 (182)
T d2fhpa1          97 KMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTN--EAVIVCETDKT  154 (182)
T ss_dssp             ESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEE--EEEEEEEEETT
T ss_pred             cccchhhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCC--CEEEEEEcCCC
Confidence            99998764     45589999999999754333322221  234533  36666665444

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=4.3e-17  Score=117.89  Aligned_cols=99  Identities=17%  Similarity=0.284  Sum_probs=81.7

Q ss_pred             cccccChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCC-ceEEEeCC
Q psy13204         44 SWYSVTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGD  120 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d  120 (189)
                      -|.....+...+.+++.+..  +.+|||+|||+|.+++.+++.+.+|+++|+|+.+++.|++|+..+++.. ++++..+|
T Consensus        31 vF~~~~~d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d  110 (194)
T d1dusa_          31 VFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD  110 (194)
T ss_dssp             STTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECS
T ss_pred             ccCCCCcCHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcc
Confidence            34343333334555665543  8899999999999999999999999999999999999999999998853 58999999


Q ss_pred             cccCCCCCCccEEEECCCCCCC
Q psy13204        121 FFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       121 ~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      ..+..++.+||+|++||||+..
T Consensus       111 ~~~~~~~~~fD~Ii~~~p~~~~  132 (194)
T d1dusa_         111 LYENVKDRKYNKIITNPPIRAG  132 (194)
T ss_dssp             TTTTCTTSCEEEEEECCCSTTC
T ss_pred             hhhhhccCCceEEEEcccEEec
Confidence            9887677899999999999763

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2e-17  Score=130.14  Aligned_cols=117  Identities=21%  Similarity=0.277  Sum_probs=94.8

Q ss_pred             cchhhhhhhcCCcccCCCcccccChH---HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHH
Q psy13204         26 GLEYFELTLADADNDATESWYSVTPE---KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL  100 (189)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~  100 (189)
                      |..++.+...-.+.+++.+|||.++.   .+.+.+.+.+.  ++.+|+|++||+|.+++.+++.+.+|+|+|.++.+++.
T Consensus       170 g~~~~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~  249 (358)
T d1uwva2         170 GEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEK  249 (358)
T ss_dssp             CCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHH
T ss_pred             CCceEEecCCEEEEECCchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHH
Confidence            34344333222577899999999984   34445555544  47899999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEECCCCCCCc
Q psy13204        101 AQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       101 a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~~~  143 (189)
                      |++|+..+++ .+++++.+|..+..     ....+|+|++|||+.+..
T Consensus       250 A~~na~~n~i-~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~  296 (358)
T d1uwva2         250 GQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA  296 (358)
T ss_dssp             HHHHHHHTTC-CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCH
T ss_pred             HHHhHHhccc-ccceeeecchhhhhhhhhhhhccCceEEeCCCCccHH
Confidence            9999999999 59999999988765     234689999999999853

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.2e-17  Score=119.86  Aligned_cols=123  Identities=11%  Similarity=0.183  Sum_probs=86.5

Q ss_pred             cccccChHHHHHHHHHhCCC---CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC
Q psy13204         44 SWYSVTPEKVAQHIASRCKA---SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG  119 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~---~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (189)
                      ....++++.+.+.+...+..   +.+|||+|||+|.++++++.+|+ +|++||.|+.+++.+++|+...+. .++.++++
T Consensus        21 ~~~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~   99 (183)
T d2fpoa1          21 PGLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNS   99 (183)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECS
T ss_pred             CCcCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeee
Confidence            34455655555555444322   88999999999999999988876 699999999999999999998887 58899999


Q ss_pred             CcccCC--CCCCccEEEECCCCCCCcccccc--ccccccCcCCCCchhHHHHhh
Q psy13204        120 DFFALA--PSLQGDVVFLSPPWGGPEYARSS--FSIDNIFPEQGGGRRLFQVAR  169 (189)
Q Consensus       120 d~~~~~--~~~~~D~v~~npp~~~~~~~~~~--~~~~~~l~~~~~g~~~~~~~~  169 (189)
                      |+.+++  ....||+|++||||.........  ..-..++.+  +++.++++..
T Consensus       100 d~~~~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~--~~iIiiE~~~  151 (183)
T d2fpoa1         100 NAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLAD--EALIYVESEV  151 (183)
T ss_dssp             CHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEE--EEEEEEEEEG
T ss_pred             cccccccccccccCEEEEcCccccchHHHHHHHHHHCCCCCC--CeEEEEEecC
Confidence            998875  45689999999999864333311  111234432  2666665543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=5.6e-17  Score=116.55  Aligned_cols=97  Identities=23%  Similarity=0.320  Sum_probs=84.5

Q ss_pred             ccccChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcc
Q psy13204         45 WYSVTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF  122 (189)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  122 (189)
                      .+.++.+.+...++..+..  +.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|++.+++.++++++++|+.
T Consensus        13 ~~~~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~   92 (186)
T d1l3ia_          13 VPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP   92 (186)
T ss_dssp             SCCCCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred             CCCCChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh
Confidence            3356777787777766644  89999999999999999999999999999999999999999999999889999999998


Q ss_pred             cCC-CCCCccEEEECCCCCC
Q psy13204        123 ALA-PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       123 ~~~-~~~~~D~v~~npp~~~  141 (189)
                      +.. ....||+|+++.+.+.
T Consensus        93 ~~~~~~~~~D~v~~~~~~~~  112 (186)
T d1l3ia_          93 EALCKIPDIDIAVVGGSGGE  112 (186)
T ss_dssp             HHHTTSCCEEEEEESCCTTC
T ss_pred             hcccccCCcCEEEEeCcccc
Confidence            775 5578999999987754

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=9.5e-17  Score=121.46  Aligned_cols=106  Identities=20%  Similarity=0.273  Sum_probs=85.8

Q ss_pred             CcccCCCcccc-cChHHHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy13204         37 ADNDATESWYS-VTPEKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSH  112 (189)
Q Consensus        37 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~  112 (189)
                      .+.++++.+-- ...|.+.+........ +.+|+|+|||+|..++.++..  ..+|+++|+|+.+++.|++|+..+++ .
T Consensus        80 ~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~  158 (274)
T d2b3ta1          80 PLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-K  158 (274)
T ss_dssp             EEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-C
T ss_pred             EEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-c
Confidence            45555544332 2335566666555544 678999999999999999886  56899999999999999999999999 5


Q ss_pred             ceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204        113 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       113 ~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~  143 (189)
                      +++++++|..+..+..+||+|++||||-...
T Consensus       159 ~v~~~~~d~~~~~~~~~fDlIvsNPPYi~~~  189 (274)
T d2b3ta1         159 NIHILQSDWFSALAGQQFAMIVSNPPYIDEQ  189 (274)
T ss_dssp             SEEEECCSTTGGGTTCCEEEEEECCCCBCTT
T ss_pred             cceeeecccccccCCCceeEEEecchhhhhh
Confidence            7999999999877778999999999998654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.70  E-value=2e-17  Score=119.44  Aligned_cols=70  Identities=27%  Similarity=0.392  Sum_probs=61.6

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      |++|||+|||+|.+++.++..|+ +|+|+|+++.+++.|++|..      +++++++|+.+.  ...||+|++||||..
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l--~~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI--SGKYDTWIMNPPFGS  119 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC--CCCEEEEEECCCC--
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhc--CCcceEEEeCcccch
Confidence            89999999999999999988875 69999999999999999863      789999999876  367999999999964

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=1.3e-16  Score=120.10  Aligned_cols=107  Identities=20%  Similarity=0.213  Sum_probs=87.9

Q ss_pred             CcccCCC-cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCce
Q psy13204         37 ADNDATE-SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKI  114 (189)
Q Consensus        37 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~  114 (189)
                      .+.++.. .+|...-..-...++..++++.+|||+|||+|.+++.+++.+ ++|+++|+||.+++.+++|++.+++.+++
T Consensus        80 ~~~~d~~~~~f~~~~~~er~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v  159 (260)
T d2frna1          80 KYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRM  159 (260)
T ss_dssp             EEEEETTTSCCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTE
T ss_pred             eEEeccccccEecCCHHHHHHHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceE
Confidence            3555543 333332233355677788889999999999999999999886 58999999999999999999999998789


Q ss_pred             EEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204        115 QFIQGDFFALAPSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       115 ~~~~~d~~~~~~~~~~D~v~~npp~~~~~  143 (189)
                      +++++|+.++.+...||.|++|||.....
T Consensus       160 ~~~~~D~~~~~~~~~~D~Ii~~~p~~~~~  188 (260)
T d2frna1         160 SAYNMDNRDFPGENIADRILMGYVVRTHE  188 (260)
T ss_dssp             EEECSCTTTCCCCSCEEEEEECCCSSGGG
T ss_pred             EEEEcchHHhccCCCCCEEEECCCCchHH
Confidence            99999999988778899999999976544

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.67  E-value=1.1e-16  Score=122.74  Aligned_cols=85  Identities=20%  Similarity=0.245  Sum_probs=74.9

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCC-ceEEEeCCcccCC-----CCCCccEE
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALA-----PSLQGDVV  133 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~-----~~~~~D~v  133 (189)
                      ....+.+|||+|||+|.+++.+++.|++|++||.|+.+++.|++|+..+++.. +++++++|+.+++     ...+||+|
T Consensus       129 ~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         129 TADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             HSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             hccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence            34458899999999999999999999999999999999999999999999854 5899999998875     45789999


Q ss_pred             EECCCCCCCcc
Q psy13204        134 FLSPPWGGPEY  144 (189)
Q Consensus       134 ~~npp~~~~~~  144 (189)
                      ++|||....+.
T Consensus       209 ilDPP~f~~~~  219 (309)
T d2igta1         209 LTDPPKFGRGT  219 (309)
T ss_dssp             EECCCSEEECT
T ss_pred             EECCCcccccc
Confidence            99999765443

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=3.1e-16  Score=121.72  Aligned_cols=102  Identities=27%  Similarity=0.362  Sum_probs=86.8

Q ss_pred             CcccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc
Q psy13204         43 ESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF  121 (189)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~  121 (189)
                      .++|...++ ...++...++++.+|||+|||+|++++.+++.|+ +|+++|+|+.+++.|++|+..+|+.++++++++|+
T Consensus       126 tG~flDqr~-~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~  204 (324)
T d2as0a2         126 TGFFLDQRE-NRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA  204 (324)
T ss_dssp             SCCCSTTHH-HHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cCcccchhh-HHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechh
Confidence            366666654 4666777778899999999999999999998865 79999999999999999999999977899999999


Q ss_pred             ccCC-----CCCCccEEEECCCCCCCccc
Q psy13204        122 FALA-----PSLQGDVVFLSPPWGGPEYA  145 (189)
Q Consensus       122 ~~~~-----~~~~~D~v~~npp~~~~~~~  145 (189)
                      .+..     ...+||+|++|||+......
T Consensus       205 ~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~  233 (324)
T d2as0a2         205 FEEMEKLQKKGEKFDIVVLDPPAFVQHEK  233 (324)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCSCSSGG
T ss_pred             hhhhHHHHhccCCCCchhcCCccccCCHH
Confidence            8764     45689999999999875543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=5.2e-16  Score=115.86  Aligned_cols=110  Identities=18%  Similarity=0.110  Sum_probs=86.8

Q ss_pred             HHHHHHHh--CCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204         53 VAQHIASR--CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ  129 (189)
Q Consensus        53 ~~~~~~~~--~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  129 (189)
                      ....+.+.  ++++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|++++...++.++++++++|+.+..+..+
T Consensus        21 ~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~  100 (245)
T d1nkva_          21 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK  100 (245)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCc
Confidence            44555555  456899999999999999999876 789999999999999999999999997789999999999877789


Q ss_pred             ccEEEECCCCCCCcccc-ccccccccCcCCCCchhH
Q psy13204        130 GDVVFLSPPWGGPEYAR-SSFSIDNIFPEQGGGRRL  164 (189)
Q Consensus       130 ~D~v~~npp~~~~~~~~-~~~~~~~~l~~~~~g~~~  164 (189)
                      ||+|++.-..++..... .+..+.++|++  ||..+
T Consensus       101 fD~v~~~~~~~~~~d~~~~l~~~~r~LkP--GG~l~  134 (245)
T d1nkva_         101 CDVAACVGATWIAGGFAGAEELLAQSLKP--GGIML  134 (245)
T ss_dssp             EEEEEEESCGGGTSSSHHHHHHHTTSEEE--EEEEE
T ss_pred             eeEEEEEehhhccCCHHHHHHHHHHHcCc--CcEEE
Confidence            99999865555443222 34456667744  35533

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.63  E-value=1.8e-16  Score=117.60  Aligned_cols=96  Identities=22%  Similarity=0.302  Sum_probs=79.5

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  139 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~  139 (189)
                      ++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...+. .++.++++|+.+.. ++.+||+|++.-.+
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   92 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAA   92 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccccccccccceeeeecee
Confidence            56799999999999999999999999999999999999999999998888 58999999999876 67899999997666


Q ss_pred             CCCcccc-ccccccccCcC
Q psy13204        140 GGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       140 ~~~~~~~-~~~~~~~~l~~  157 (189)
                      ++..... ....+.++|++
T Consensus        93 ~~~~d~~~~l~~~~r~Lkp  111 (234)
T d1xxla_          93 HHFSDVRKAVREVARVLKQ  111 (234)
T ss_dssp             GGCSCHHHHHHHHHHHEEE
T ss_pred             ecccCHHHHHHHHHHeeCC
Confidence            5543222 33345556643

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=4.6e-16  Score=116.66  Aligned_cols=93  Identities=26%  Similarity=0.261  Sum_probs=80.7

Q ss_pred             cccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204         46 YSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA  125 (189)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  125 (189)
                      .+.|...+.+.+....+++.+|||+|||+|.+++.+++.|.+|+|+|+|+.+++.|++|++.+++  +++++++|..+..
T Consensus       103 ~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~~~  180 (254)
T d2nxca1         103 HHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEAAL  180 (254)
T ss_dssp             CSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHHHG
T ss_pred             ccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccccc
Confidence            33445667788888888899999999999999999999999999999999999999999999998  6788999988766


Q ss_pred             CCCCccEEEECCCCC
Q psy13204        126 PSLQGDVVFLSPPWG  140 (189)
Q Consensus       126 ~~~~~D~v~~npp~~  140 (189)
                      +..+||+|++|...+
T Consensus       181 ~~~~fD~V~ani~~~  195 (254)
T d2nxca1         181 PFGPFDLLVANLYAE  195 (254)
T ss_dssp             GGCCEEEEEEECCHH
T ss_pred             cccccchhhhccccc
Confidence            677999999985443

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.62  E-value=6.5e-16  Score=110.59  Aligned_cols=125  Identities=17%  Similarity=0.198  Sum_probs=84.9

Q ss_pred             cccccChHHHHHHHHHhCC---CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCC-ceEEEe
Q psy13204         44 SWYSVTPEKVAQHIASRCK---ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQ  118 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~---~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~  118 (189)
                      ....++++.+.+.+...+.   .+.+|||++||+|.+++++..+|+ +|+.||.++.+++.+++|++..++.. ...+..
T Consensus        21 ~~~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~  100 (183)
T d2ifta1          21 EGLRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVIN  100 (183)
T ss_dssp             -------CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEEC
T ss_pred             CCcCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccc
Confidence            3455565555555544442   288999999999999999999877 79999999999999999999888743 467788


Q ss_pred             CCcccCC----CCCCccEEEECCCCCCCccccccc--cccccCcCCCCchhHHHHhhh
Q psy13204        119 GDFFALA----PSLQGDVVFLSPPWGGPEYARSSF--SIDNIFPEQGGGRRLFQVARG  170 (189)
Q Consensus       119 ~d~~~~~----~~~~~D~v~~npp~~~~~~~~~~~--~~~~~l~~~~~g~~~~~~~~~  170 (189)
                      .|+.++.    ....||+|++||||..........  .-..++.+  +++.++|+...
T Consensus       101 ~d~~~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~--~~liiiE~~~~  156 (183)
T d2ifta1         101 QSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKP--NALIYVETEKD  156 (183)
T ss_dssp             SCHHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEE--EEEEEEEEESS
T ss_pred             ccccccccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCC--CcEEEEEecCC
Confidence            8876654    234699999999998633333111  12234533  36666665443

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=6.4e-16  Score=119.61  Aligned_cols=99  Identities=23%  Similarity=0.346  Sum_probs=81.0

Q ss_pred             cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204         44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  123 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  123 (189)
                      ++|...++.  +......+ +++|||+|||+|++++.+++.+.+|+++|+|+.+++.|++|+..+|+ ++++++++|+.+
T Consensus       129 G~flDqr~~--r~~~~~~~-g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~  204 (318)
T d1wxxa2         129 GAYLDQREN--RLYMERFR-GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFD  204 (318)
T ss_dssp             CCCGGGHHH--HHHGGGCC-EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHH
T ss_pred             ccchhhhhh--HHHHHHhC-CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHH
Confidence            444444432  33344444 89999999999999999998888999999999999999999999999 589999999987


Q ss_pred             CC-----CCCCccEEEECCCCCCCcccc
Q psy13204        124 LA-----PSLQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       124 ~~-----~~~~~D~v~~npp~~~~~~~~  146 (189)
                      +.     ...+||+|++|||+...+...
T Consensus       205 ~~~~~~~~~~~fD~Vi~DpP~~~~~~~~  232 (318)
T d1wxxa2         205 LLRRLEKEGERFDLVVLDPPAFAKGKKD  232 (318)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCSCCSTTS
T ss_pred             HhhhhHhhhcCCCEEEEcCCccccchHH
Confidence            64     456899999999998765443

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.61  E-value=4.1e-16  Score=115.06  Aligned_cols=97  Identities=18%  Similarity=0.186  Sum_probs=78.8

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCC
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  138 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp  138 (189)
                      .++++.+|||+|||+|.++..+++.+++|+|+|+|+.+++.|++++...+. .+++++++|+.+.+ +..+||+|++.--
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~fD~v~~~~~   90 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFHIVTCRIA   90 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccc-cccccccccccccccccccccccccccc
Confidence            456689999999999999999999999999999999999999999998887 58999999999876 6789999999766


Q ss_pred             CCCCcccc-ccccccccCcC
Q psy13204        139 WGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       139 ~~~~~~~~-~~~~~~~~l~~  157 (189)
                      +++..... ....+.++|++
T Consensus        91 l~~~~d~~~~l~~~~r~Lkp  110 (231)
T d1vl5a_          91 AHHFPNPASFVSEAYRVLKK  110 (231)
T ss_dssp             GGGCSCHHHHHHHHHHHEEE
T ss_pred             ccccCCHHHHHHHHHHhcCC
Confidence            65543322 33345555643

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.61  E-value=1.4e-15  Score=117.50  Aligned_cols=99  Identities=15%  Similarity=0.174  Sum_probs=79.7

Q ss_pred             cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCc
Q psy13204         44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDF  121 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~  121 (189)
                      ++|...++ ....++..+.+|++|||++||+|++++.++..|+ +|+++|+|+.+++.+++|+..+++. .+++++++|+
T Consensus       126 GlflDqR~-~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~  204 (317)
T d2b78a2         126 GIFLDQRQ-VRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV  204 (317)
T ss_dssp             SSCGGGHH-HHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH
T ss_pred             CCcHHHHH-HHHHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccH
Confidence            45544443 3445556666699999999999999999988776 6999999999999999999999984 4799999999


Q ss_pred             ccCC-----CCCCccEEEECCCCCCCc
Q psy13204        122 FALA-----PSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       122 ~~~~-----~~~~~D~v~~npp~~~~~  143 (189)
                      .+++     ...+||+|++|||.....
T Consensus       205 ~~~l~~~~~~~~~fD~Ii~DPP~f~~~  231 (317)
T d2b78a2         205 FDYFKYARRHHLTYDIIIIDPPSFARN  231 (317)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCC---
T ss_pred             HHHHHHHHhhcCCCCEEEEcChhhccc
Confidence            8875     456899999999976543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=7.5e-16  Score=112.98  Aligned_cols=103  Identities=20%  Similarity=0.227  Sum_probs=81.9

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCcc
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGD  131 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D  131 (189)
                      +...+.+.++++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++....+.  .+.++++|+.+.. ++.+||
T Consensus        27 ~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~~~~~fD  104 (226)
T d1ve3a1          27 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSFEDKTFD  104 (226)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCSCTTCEE
T ss_pred             HHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccc--cccccccccccccccCcCce
Confidence            3444455567788999999999999999999999999999999999999999887775  6788999999876 668999


Q ss_pred             EEEECCCCCCCcccc---ccccccccCcC
Q psy13204        132 VVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       132 ~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      +|++.-.+++....+   ....+.++|++
T Consensus       105 ~I~~~~~l~~~~~~d~~~~l~~i~~~Lkp  133 (226)
T d1ve3a1         105 YVIFIDSIVHFEPLELNQVFKEVRRVLKP  133 (226)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHEEE
T ss_pred             EEEEecchhhCChhHHHHHHHHHHHHcCc
Confidence            999976666543222   33456666644

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.58  E-value=1.4e-15  Score=109.95  Aligned_cols=97  Identities=18%  Similarity=0.099  Sum_probs=80.4

Q ss_pred             HhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204         59 SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  138 (189)
Q Consensus        59 ~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp  138 (189)
                      ..++ +.+|||+|||+|..+..++++|.+|+|+|+|+.+++.++++....++ +++.+.+.|+.+.....+||+|++...
T Consensus        27 ~~~~-~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~I~~~~~  104 (198)
T d2i6ga1          27 KVVA-PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTFDGEYDFILSTVV  104 (198)
T ss_dssp             TTSC-SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCCCCCEEEEEEESC
T ss_pred             ccCC-CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccccccccEEEEeee
Confidence            3444 56999999999999999999999999999999999999999998888 579999999988877789999999988


Q ss_pred             CCCCcccc---ccccccccCcC
Q psy13204        139 WGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       139 ~~~~~~~~---~~~~~~~~l~~  157 (189)
                      ++......   ....+.+++++
T Consensus       105 ~~~~~~~~~~~~l~~~~~~L~p  126 (198)
T d2i6ga1         105 MMFLEAQTIPGLIANMQRCTKP  126 (198)
T ss_dssp             GGGSCTTHHHHHHHHHHHTEEE
T ss_pred             eecCCHHHHHHHHHHHHHHcCC
Confidence            88765443   22344555533

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.58  E-value=2.4e-15  Score=114.49  Aligned_cols=97  Identities=11%  Similarity=0.131  Sum_probs=79.2

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  138 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp  138 (189)
                      ++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....|+.++++++++|+.+.+ +..+||+|++.-.
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  144 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA  144 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccch
Confidence            355899999999999999999886 88999999999999999999999999878999999999986 6678999999766


Q ss_pred             CCCCcccc-ccccccccCcC
Q psy13204        139 WGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       139 ~~~~~~~~-~~~~~~~~l~~  157 (189)
                      +++..... ....+.++|++
T Consensus       145 l~h~~d~~~~l~~~~~~Lkp  164 (282)
T d2o57a1         145 FLHSPDKLKVFQECARVLKP  164 (282)
T ss_dssp             GGGCSCHHHHHHHHHHHEEE
T ss_pred             hhhccCHHHHHHHHHHhcCC
Confidence            65443222 23345555533

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2e-14  Score=107.50  Aligned_cols=79  Identities=16%  Similarity=0.112  Sum_probs=67.3

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------CCCCccEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDVVF  134 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~v~  134 (189)
                      ..++||+|||+|..++.+++.  +.+++|+|+++++++.|++|+..+++.+++.++..+.....       ...+||+|+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv  141 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  141 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence            458999999999999999876  88999999999999999999999999888988887654432       234799999


Q ss_pred             ECCCCCCC
Q psy13204        135 LSPPWGGP  142 (189)
Q Consensus       135 ~npp~~~~  142 (189)
                      +||||...
T Consensus       142 sNPPY~~~  149 (250)
T d2h00a1         142 CNPPFFAN  149 (250)
T ss_dssp             ECCCCC--
T ss_pred             ecCccccc
Confidence            99999964

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.55  E-value=1.6e-14  Score=107.67  Aligned_cols=72  Identities=19%  Similarity=0.210  Sum_probs=66.0

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  135 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~  135 (189)
                      .++.+|||+|||+|.++..+++.|.+|+|+|+|+.|++.|+++....+.  +++++++|+.++....+||+|++
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~i~~  107 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCEEEEEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc--cceeeccchhhhcccccccccce
Confidence            3378999999999999999999999999999999999999999988887  79999999998875678999997

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=2.2e-14  Score=108.12  Aligned_cols=106  Identities=17%  Similarity=0.206  Sum_probs=82.1

Q ss_pred             CcccCCCcccccC--hHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCC
Q psy13204         37 ADNDATESWYSVT--PEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVS  111 (189)
Q Consensus        37 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~  111 (189)
                      .+.++++.+ -+.  .+.+.+.+.+....  ..+++|+|||+|..++.+++. ..+|+++|+|+.+++.|++|++.+++.
T Consensus        81 ~f~v~~~vl-IPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~  159 (271)
T d1nv8a_          81 SFLVEEGVF-VPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS  159 (271)
T ss_dssp             EEECCTTSC-CCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             EEEEecCcc-CchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCC
Confidence            344555433 222  35566555544332  568999999999999998876 678999999999999999999999997


Q ss_pred             CceEEEeCCcccCCC--CCCccEEEECCCCCCCc
Q psy13204        112 HKIQFIQGDFFALAP--SLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       112 ~~~~~~~~d~~~~~~--~~~~D~v~~npp~~~~~  143 (189)
                      .++.+..+|..+..+  ...||+|++||||-..+
T Consensus       160 ~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~  193 (271)
T d1nv8a_         160 DRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSS  193 (271)
T ss_dssp             TSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGG
T ss_pred             ceeEEeecccccccccccCcccEEEEcccccCcc
Confidence            778899999888653  35899999999999644

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=4.2e-14  Score=105.30  Aligned_cols=70  Identities=31%  Similarity=0.466  Sum_probs=65.4

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~  135 (189)
                      +.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.|+++....+.  ++++.++|+.++....+||+|++
T Consensus        42 ~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~~~fD~I~~  111 (251)
T d1wzna1          42 VRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEFDAVTM  111 (251)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSCEEEEEE
T ss_pred             CCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc--cchheehhhhhcccccccchHhh
Confidence            67899999999999999999999999999999999999999988877  89999999999876678999998

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.48  E-value=3.4e-14  Score=104.51  Aligned_cols=90  Identities=16%  Similarity=0.139  Sum_probs=73.6

Q ss_pred             HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC
Q psy13204         52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS  127 (189)
Q Consensus        52 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  127 (189)
                      .+...+...++++.+|||+|||+|..+..+++.    +.+|+|+|+|+.|++.|++++...+...++.+.++|..+. +.
T Consensus        28 ~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~-~~  106 (225)
T d1im8a_          28 AIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-EI  106 (225)
T ss_dssp             HHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-CC
T ss_pred             HHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-cc
Confidence            344555556777999999999999999999874    6799999999999999999998877766789999998876 44


Q ss_pred             CCccEEEECCCCCCC
Q psy13204        128 LQGDVVFLSPPWGGP  142 (189)
Q Consensus       128 ~~~D~v~~npp~~~~  142 (189)
                      ..+|++++.--.+..
T Consensus       107 ~~~d~i~~~~~l~~~  121 (225)
T d1im8a_         107 KNASMVILNFTLQFL  121 (225)
T ss_dssp             CSEEEEEEESCGGGS
T ss_pred             ccceeeEEeeecccc
Confidence            678999886555544

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.46  E-value=1.5e-14  Score=103.75  Aligned_cols=83  Identities=14%  Similarity=0.134  Sum_probs=66.6

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCC-----------CCceEEEeCCcccCC--CC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV-----------SHKIQFIQGDFFALA--PS  127 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~--~~  127 (189)
                      ++++.+|||+|||+|..+..++++|.+|+|+|+|+.|++.|+++++..+.           ...+++.++|..+..  ..
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~   97 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   97 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence            45589999999999999999999999999999999999999998854322           124678888888775  33


Q ss_pred             CCccEEEECCCCCCCc
Q psy13204        128 LQGDVVFLSPPWGGPE  143 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~  143 (189)
                      ..+|+|++.-.++...
T Consensus        98 ~~~D~i~~~~~l~~l~  113 (201)
T d1pjza_          98 GHCAAFYDRAAMIALP  113 (201)
T ss_dssp             HSEEEEEEESCGGGSC
T ss_pred             cceeEEEEEeeeEecc
Confidence            5799999865555543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.46  E-value=2.7e-13  Score=100.98  Aligned_cols=80  Identities=14%  Similarity=0.089  Sum_probs=71.5

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  137 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~np  137 (189)
                      +++|.+|||+|||+|.++..+++.   ..+|+++|.++++++.|++|+...+...++++.++|+.+..++..||.|++|.
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~  162 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADI  162 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECC
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecC
Confidence            456999999999999999999986   46899999999999999999988766579999999999887778999999998


Q ss_pred             CCC
Q psy13204        138 PWG  140 (189)
Q Consensus       138 p~~  140 (189)
                      |-.
T Consensus       163 p~p  165 (250)
T d1yb2a1         163 PDP  165 (250)
T ss_dssp             SCG
T ss_pred             Cch
Confidence            754

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=1.6e-13  Score=104.54  Aligned_cols=115  Identities=12%  Similarity=0.106  Sum_probs=84.6

Q ss_pred             cchhhhhhhcCCcccCCCcccc-c--ChH----HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCH
Q psy13204         26 GLEYFELTLADADNDATESWYS-V--TPE----KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDP   95 (189)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~----~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~   95 (189)
                      +.+++..-+.+.+.++. ++|. .  +-+    ...+.+++.+  ++|.+|||+|||.|++++.+++. |++|+|+++|+
T Consensus        16 ~~~fy~~~Lg~~~~YS~-~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~   94 (291)
T d1kpia_          16 SNEFFKLWLDPSMTYSC-AYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSE   94 (291)
T ss_dssp             CHHHHHHHSCTTCCCSC-CCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH
T ss_pred             CHHHHHHhcCCCCCeee-EEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchH
Confidence            45555554555554443 3333 2  112    2344455544  34999999999999999998765 99999999999


Q ss_pred             HHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204         96 AKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus        96 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~  143 (189)
                      +.++.+++.+...++.+.+++...|....  +.+||.|++--.+.+..
T Consensus        95 ~q~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~~fD~i~sie~~eH~~  140 (291)
T d1kpia_          95 NQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAFEHFA  140 (291)
T ss_dssp             HHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESCGGGTT
T ss_pred             HHHHHHHHHHHhhccchhhhhhhhccccc--ccccceEeechhHHhcc
Confidence            99999999999999987899999987543  56899999977776544

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=2.3e-13  Score=103.41  Aligned_cols=129  Identities=10%  Similarity=0.125  Sum_probs=90.1

Q ss_pred             cchhhhhhhcCCcccCCCccccc---ChHH----HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCH
Q psy13204         26 GLEYFELTLADADNDATESWYSV---TPEK----VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDP   95 (189)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~   95 (189)
                      +.+++..-+.+.+.++. ++|..   +.++    ..+.+++.+  ++|.+|||+|||.|++++.+++. |++|+|+.+|+
T Consensus        17 ~~~fy~~~Lg~~~~YS~-g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~   95 (285)
T d1kpga_          17 SDDFFRLFLDPTQTYSC-AYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSK   95 (285)
T ss_dssp             CHHHHTTTSCTTCCCSC-CCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH
T ss_pred             cHHHHHHhCCCCCcEee-EEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccH
Confidence            45555555555554443 34432   2222    234454544  44999999999999999998776 99999999999


Q ss_pred             HHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204         96 AKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus        96 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      +.++.|++++...|+.+++++..+|..+.  +.+||.|++--.+.+.....   ....+.++|++
T Consensus        96 ~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkp  158 (285)
T d1kpga_          96 NQANHVQQLVANSENLRSKRVLLAGWEQF--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA  158 (285)
T ss_dssp             HHHHHHHHHHHTCCCCSCEEEEESCGGGC--CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHhhhhcc--cccccceeeehhhhhcCchhHHHHHHHHHhhcCC
Confidence            99999999999999988999999998776  36899999855554433221   22235556644

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=6.8e-13  Score=98.05  Aligned_cols=99  Identities=15%  Similarity=0.088  Sum_probs=72.6

Q ss_pred             HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCc
Q psy13204         52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG  130 (189)
Q Consensus        52 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  130 (189)
                      .+...+...++.+.+|||+|||+|.++..+++.|++|+|+|+|+.|++.|+++.       ...++++|+.+.. ++++|
T Consensus        31 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~-------~~~~~~~~~~~l~~~~~~f  103 (246)
T d2avna1          31 LIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKG-------VKNVVEAKAEDLPFPSGAF  103 (246)
T ss_dssp             HHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHT-------CSCEEECCTTSCCSCTTCE
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCchhcccccccceEEEEeeccccccccccccc-------ccccccccccccccccccc
Confidence            344445556677889999999999999999999999999999999999998762       2246788988875 66899


Q ss_pred             cEEEEC-CCCCCCcccc-ccccccccCcC
Q psy13204        131 DVVFLS-PPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       131 D~v~~n-pp~~~~~~~~-~~~~~~~~l~~  157 (189)
                      |+|++. ...++..... ....+.++|++
T Consensus       104 D~ii~~~~~~~~~~d~~~~l~~i~r~Lk~  132 (246)
T d2avna1         104 EAVLALGDVLSYVENKDKAFSEIRRVLVP  132 (246)
T ss_dssp             EEEEECSSHHHHCSCHHHHHHHHHHHEEE
T ss_pred             cceeeecchhhhhhhHHHHHHHHHhhcCc
Confidence            999973 3444332222 23345556644

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.43  E-value=4.4e-14  Score=103.98  Aligned_cols=82  Identities=11%  Similarity=0.071  Sum_probs=68.2

Q ss_pred             HHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEEC
Q psy13204         57 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  136 (189)
Q Consensus        57 ~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~n  136 (189)
                      +....+ +.+|||+|||+|.++..+++.|.+|+|+|+|+++++.|+.+..     .+++++++|+.+...+.+||+|++.
T Consensus        15 ~~~~~~-~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~~~fD~I~~~   88 (225)
T d2p7ia1          15 FTPFFR-PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLPRRYDNIVLT   88 (225)
T ss_dssp             HGGGCC-SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCSSCEEEEEEE
T ss_pred             hhhhCC-CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc-----ccccccccccccccccccccccccc
Confidence            334444 7789999999999999999999999999999999999987642     4789999999888767899999997


Q ss_pred             CCCCCCcc
Q psy13204        137 PPWGGPEY  144 (189)
Q Consensus       137 pp~~~~~~  144 (189)
                      -.+++...
T Consensus        89 ~vleh~~d   96 (225)
T d2p7ia1          89 HVLEHIDD   96 (225)
T ss_dssp             SCGGGCSS
T ss_pred             ceeEecCC
Confidence            66665443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.43  E-value=5.9e-13  Score=99.42  Aligned_cols=84  Identities=20%  Similarity=0.210  Sum_probs=69.9

Q ss_pred             HHhCCCCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEE
Q psy13204         58 ASRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVF  134 (189)
Q Consensus        58 ~~~~~~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~  134 (189)
                      ....+++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.|++++...+...++.+.++|+....  ...+||+|+
T Consensus        19 ~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~   98 (252)
T d1ri5a_          19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVIS   98 (252)
T ss_dssp             HHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             HHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEE
Confidence            3456778999999999999999998886 4799999999999999999887776568999999997654  456899999


Q ss_pred             ECCCCCC
Q psy13204        135 LSPPWGG  141 (189)
Q Consensus       135 ~npp~~~  141 (189)
                      +.--.++
T Consensus        99 ~~~~l~~  105 (252)
T d1ri5a_          99 SQFSFHY  105 (252)
T ss_dssp             EESCGGG
T ss_pred             Ecceeee
Confidence            9644443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=4.8e-13  Score=101.48  Aligned_cols=101  Identities=12%  Similarity=0.060  Sum_probs=79.9

Q ss_pred             HHHHHhC--CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCcc
Q psy13204         55 QHIASRC--KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD  131 (189)
Q Consensus        55 ~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  131 (189)
                      +.+.+.+  ++|.+|||+|||.|+++..+++. |.+|+|+|+|++.++.|+++++..++...+.+...|..+.  ..+||
T Consensus        42 ~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--~~~fD  119 (280)
T d2fk8a1          42 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPVD  119 (280)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--CCCCS
T ss_pred             HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--ccchh
Confidence            3444443  45999999999999999999876 9999999999999999999999999877888988888766  46899


Q ss_pred             EEEECCCCCCCcccc---ccccccccCcC
Q psy13204        132 VVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       132 ~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      .|++--.+.+.....   ....+.++|++
T Consensus       120 ~i~si~~~eh~~~~~~~~~f~~i~~~Lkp  148 (280)
T d2fk8a1         120 RIVSIEAFEHFGHENYDDFFKRCFNIMPA  148 (280)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCT
T ss_pred             hhhHhhHHHHhhhhhHHHHHHHHHhccCC
Confidence            999976666654332   23346677754

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.42  E-value=1.4e-13  Score=104.53  Aligned_cols=103  Identities=13%  Similarity=0.076  Sum_probs=79.6

Q ss_pred             HHHHHHHh---CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC
Q psy13204         53 VAQHIASR---CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP  126 (189)
Q Consensus        53 ~~~~~~~~---~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  126 (189)
                      ..+.++..   +.++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|+++....+.  ++++.++|+.+...
T Consensus        14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~   91 (281)
T d2gh1a1          14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL   91 (281)
T ss_dssp             HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC
T ss_pred             HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccccc
Confidence            44555443   344889999999999999999875   67899999999999999999987776  89999999988765


Q ss_pred             CCCccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204        127 SLQGDVVFLSPPWGGPEYAR-SSFSIDNIFPE  157 (189)
Q Consensus       127 ~~~~D~v~~npp~~~~~~~~-~~~~~~~~l~~  157 (189)
                      ..+||+|+++-.+++..... ....+.+.+++
T Consensus        92 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp  123 (281)
T d2gh1a1          92 NDKYDIAICHAFLLHMTTPETMLQKMIHSVKK  123 (281)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEE
T ss_pred             cCCceEEEEehhhhcCCCHHHHHHHHHHHcCc
Confidence            56899999987777654333 23345555533

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=3.2e-13  Score=104.63  Aligned_cols=93  Identities=22%  Similarity=0.203  Sum_probs=75.0

Q ss_pred             cChHHHHHHHHHhC------CCCCEEEEecCCCChHHHHHHHh-------CCeEEEEeCCHHHHHHHHHHHHHhCCCCce
Q psy13204         48 VTPEKVAQHIASRC------KASDVVIDGFCGCGGNTIQFAAV-------CQKVISIDIDPAKLRLAQHNASVYGVSHKI  114 (189)
Q Consensus        48 ~~~~~~~~~~~~~~------~~~~~vlD~g~G~G~~~~~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~  114 (189)
                      .||..+...|+..+      ..+.+|+|+|||+|++.+.+...       ..+++|+|+++.+++.|+.++...+.  ..
T Consensus        96 ~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~  173 (328)
T d2f8la1          96 MTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KM  173 (328)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CC
T ss_pred             ECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hh
Confidence            46766666555432      23678999999999999998653       23689999999999999999988886  67


Q ss_pred             EEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204        115 QFIQGDFFALAPSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       115 ~~~~~d~~~~~~~~~~D~v~~npp~~~~  142 (189)
                      .+.++|.....+...||+|++||||...
T Consensus       174 ~~~~~d~~~~~~~~~fD~vi~NPPy~~~  201 (328)
T d2f8la1         174 TLLHQDGLANLLVDPVDVVISDLPVGYY  201 (328)
T ss_dssp             EEEESCTTSCCCCCCEEEEEEECCCSEE
T ss_pred             hhhccccccccccccccccccCCCCCCC
Confidence            8888888777777899999999999754

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.40  E-value=3.5e-12  Score=102.05  Aligned_cols=99  Identities=23%  Similarity=0.368  Sum_probs=82.4

Q ss_pred             cChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh---------------CCeEEEEeCCHHHHHHHHHHHHHhCC
Q psy13204         48 VTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV---------------CQKVISIDIDPAKLRLAQHNASVYGV  110 (189)
Q Consensus        48 ~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~---------------~~~v~~vD~~~~~~~~a~~~~~~~~~  110 (189)
                      .||..+++.|++.+.+  +.+|+|++||+|++.+.+.+.               ...++|+|+++.+...|+.|+..++.
T Consensus       145 ~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~  224 (425)
T d2okca1         145 FTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI  224 (425)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             ccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC
Confidence            3777899999998866  789999999999999998764               13589999999999999999998887


Q ss_pred             CC-ceEEEeCCcccCCCCCCccEEEECCCCCCCcccc
Q psy13204        111 SH-KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYAR  146 (189)
Q Consensus       111 ~~-~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~~~~  146 (189)
                      .. ...+.++|..+..+...||+|++||||+......
T Consensus       225 ~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~  261 (425)
T d2okca1         225 GTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGS  261 (425)
T ss_dssp             CSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTC
T ss_pred             ccccceeecCchhhhhcccccceEEecCCCCCCcccc
Confidence            43 4678899988877778899999999998654433

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.1e-14  Score=103.37  Aligned_cols=79  Identities=16%  Similarity=0.110  Sum_probs=67.6

Q ss_pred             CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~  141 (189)
                      +.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. .++++.++|+.++. +..+||+|++.-.+++
T Consensus        61 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h  139 (222)
T d2ex4a1          61 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  139 (222)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            679999999999999987654 66899999999999999999887766 47899999999986 5678999999766665


Q ss_pred             Cc
Q psy13204        142 PE  143 (189)
Q Consensus       142 ~~  143 (189)
                      ..
T Consensus       140 ~~  141 (222)
T d2ex4a1         140 LT  141 (222)
T ss_dssp             SC
T ss_pred             ch
Confidence            44

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.9e-13  Score=99.08  Aligned_cols=105  Identities=13%  Similarity=0.102  Sum_probs=78.0

Q ss_pred             HHHHHHHh--CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhC----------------CCCce
Q psy13204         53 VAQHIASR--CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYG----------------VSHKI  114 (189)
Q Consensus        53 ~~~~~~~~--~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----------------~~~~~  114 (189)
                      +.+.+...  .+++.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.|+++.....                ...++
T Consensus        33 l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  112 (229)
T d2bzga1          33 LKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNI  112 (229)
T ss_dssp             HHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcE
Confidence            44545443  3448899999999999999999999999999999999999988764321                11378


Q ss_pred             EEEeCCcccCC--CCCCccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204        115 QFIQGDFFALA--PSLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPE  157 (189)
Q Consensus       115 ~~~~~d~~~~~--~~~~~D~v~~npp~~~~~~~~---~~~~~~~~l~~  157 (189)
                      ++.++|+.+..  ....||+|+..--++......   ....+.+++++
T Consensus       113 ~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp  160 (229)
T d2bzga1         113 SLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK  160 (229)
T ss_dssp             EEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE
T ss_pred             EEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC
Confidence            99999998875  456899999877777654433   22345556644

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=1.9e-13  Score=103.18  Aligned_cols=107  Identities=16%  Similarity=0.222  Sum_probs=78.2

Q ss_pred             cccccChHHHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCC
Q psy13204         44 SWYSVTPEKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD  120 (189)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d  120 (189)
                      ++++.-.+.+...+...... +.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.|+++.      .++++.++|
T Consensus        64 g~~~~l~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d  137 (268)
T d1p91a_          64 GHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVAS  137 (268)
T ss_dssp             TTTHHHHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECC
T ss_pred             CchHHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeee
Confidence            34443345555666665544 789999999999999999987  568999999999999987653      378999999


Q ss_pred             cccCC-CCCCccEEEECCCCCCCccccccccccccCcCCCCchhH
Q psy13204        121 FFALA-PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRL  164 (189)
Q Consensus       121 ~~~~~-~~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~~~  164 (189)
                      +.+.+ ++.+||+|++.-..+.      ..++.++|++  ||..+
T Consensus       138 ~~~l~~~~~sfD~v~~~~~~~~------~~e~~rvLkp--gG~l~  174 (268)
T d1p91a_         138 SHRLPFSDTSMDAIIRIYAPCK------AEELARVVKP--GGWVI  174 (268)
T ss_dssp             TTSCSBCTTCEEEEEEESCCCC------HHHHHHHEEE--EEEEE
T ss_pred             hhhccCCCCCEEEEeecCCHHH------HHHHHHHhCC--CcEEE
Confidence            99887 6788999997432222      3346666644  35533

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.36  E-value=6e-12  Score=94.22  Aligned_cols=88  Identities=18%  Similarity=0.141  Sum_probs=72.5

Q ss_pred             HHHHHHh--CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh--CCCCceEEEeCCcccCC-
Q psy13204         54 AQHIASR--CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVY--GVSHKIQFIQGDFFALA-  125 (189)
Q Consensus        54 ~~~~~~~--~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~-  125 (189)
                      +..+...  +++|.+|||+|||+|.++..+++.   ..+|+++|+++++++.|++|++..  +...++.+.++|+.+.. 
T Consensus        85 ~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~  164 (264)
T d1i9ga_          85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL  164 (264)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred             HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence            3444443  356999999999999999999987   468999999999999999999765  34468999999998764 


Q ss_pred             CCCCccEEEECCCCCC
Q psy13204        126 PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 ~~~~~D~v~~npp~~~  141 (189)
                      ++..||.|++|.|-.+
T Consensus       165 ~~~~fDaV~ldlp~P~  180 (264)
T d1i9ga_         165 PDGSVDRAVLDMLAPW  180 (264)
T ss_dssp             CTTCEEEEEEESSCGG
T ss_pred             cCCCcceEEEecCCHH
Confidence            6788999999877554

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=1e-12  Score=101.82  Aligned_cols=81  Identities=22%  Similarity=0.276  Sum_probs=70.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~  140 (189)
                      ++++|||+|||+|.+++.++++|+ +|+|+|.++ ++..|+++...++...+++++++|+.+.. +..++|+|++++...
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~  116 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence            389999999999999999999975 799999996 67889999999998788999999999886 667899999987766


Q ss_pred             CCcc
Q psy13204        141 GPEY  144 (189)
Q Consensus       141 ~~~~  144 (189)
                      ....
T Consensus       117 ~~~~  120 (328)
T d1g6q1_         117 FLLY  120 (328)
T ss_dssp             TBST
T ss_pred             eecc
Confidence            5443

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=1.1e-11  Score=90.29  Aligned_cols=79  Identities=20%  Similarity=0.218  Sum_probs=68.3

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEEC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  136 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n  136 (189)
                      ++++.+|||+|||+|..+..+++.   ..+|+++|+++++++.|++++...++ .++.++++|..+.. ...+||+|+++
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~~~~~fD~I~~~  151 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVPEFSPYDVIFVT  151 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHccccccchhhhhhh
Confidence            456999999999999999999886   45899999999999999999999988 58899999988765 45679999997


Q ss_pred             CCCC
Q psy13204        137 PPWG  140 (189)
Q Consensus       137 pp~~  140 (189)
                      ....
T Consensus       152 ~~~~  155 (213)
T d1dl5a1         152 VGVD  155 (213)
T ss_dssp             SBBS
T ss_pred             ccHH
Confidence            6544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=1.1e-12  Score=101.23  Aligned_cols=80  Identities=20%  Similarity=0.124  Sum_probs=68.7

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~  140 (189)
                      ++++|||+|||+|.+++.++++|+ +|+|+|.++. ...+++++..+++.++++++++|+.+.. +..++|+|+++....
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~  111 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  111 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence            389999999999999999999975 7999999975 5777888888998788999999999986 567899999987765


Q ss_pred             CCc
Q psy13204        141 GPE  143 (189)
Q Consensus       141 ~~~  143 (189)
                      ...
T Consensus       112 ~l~  114 (316)
T d1oria_         112 CLF  114 (316)
T ss_dssp             TBT
T ss_pred             eec
Confidence            543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=1.1e-11  Score=93.05  Aligned_cols=100  Identities=20%  Similarity=0.164  Sum_probs=79.1

Q ss_pred             HHHHHHh--CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC
Q psy13204         54 AQHIASR--CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL  128 (189)
Q Consensus        54 ~~~~~~~--~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  128 (189)
                      +..++..  +++|.+|||+|||+|.++..+++.   +++|+++|+++++++.|++|++..++.+++.+...|........
T Consensus        92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~  171 (266)
T d1o54a_          92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK  171 (266)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred             HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccccc
Confidence            4444444  355999999999999999999986   46899999999999999999999998778999999987766677


Q ss_pred             CccEEEECCCCCCCccccccccccccCcC
Q psy13204        129 QGDVVFLSPPWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~~~~~~~~~l~~  157 (189)
                      .+|.|+.|.|-.+    .....+.+.|++
T Consensus       172 ~~D~V~~d~p~p~----~~l~~~~~~LKp  196 (266)
T d1o54a_         172 DVDALFLDVPDPW----NYIDKCWEALKG  196 (266)
T ss_dssp             SEEEEEECCSCGG----GTHHHHHHHEEE
T ss_pred             ceeeeEecCCCHH----HHHHHHHhhcCC
Confidence            8999999876432    222345555643

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.8e-11  Score=93.94  Aligned_cols=83  Identities=20%  Similarity=0.180  Sum_probs=69.5

Q ss_pred             CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~  140 (189)
                      ++++|||+|||+|.+++.++++|+ +|+|+|.++.+.. ++++...++..++++++++|+.+.. +..+||+|+++++.+
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~  113 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY  113 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence            489999999999999999999975 7999999998764 5666777777678999999999986 567999999988877


Q ss_pred             CCcccc
Q psy13204        141 GPEYAR  146 (189)
Q Consensus       141 ~~~~~~  146 (189)
                      ......
T Consensus       114 ~~~~e~  119 (311)
T d2fyta1         114 FLLFES  119 (311)
T ss_dssp             TBTTTC
T ss_pred             eccccc
Confidence            654433

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1e-12  Score=96.86  Aligned_cols=79  Identities=11%  Similarity=0.007  Sum_probs=65.5

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEEC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLS  136 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~n  136 (189)
                      ...|.+|||+|||+|..+..+++. +.+++|+|+|+.+++.|+++....+.  ++.++.+++....   +..+||.|+.|
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~i~fD  128 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD  128 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc--ccccccccccccccccccccccceeec
Confidence            345889999999999999999887 46899999999999999999876654  7788888876543   66789999998


Q ss_pred             CCCCC
Q psy13204        137 PPWGG  141 (189)
Q Consensus       137 pp~~~  141 (189)
                      +....
T Consensus       129 ~~~~~  133 (229)
T d1zx0a1         129 TYPLS  133 (229)
T ss_dssp             CCCCB
T ss_pred             ccccc
Confidence            76544

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.30  E-value=8e-12  Score=92.20  Aligned_cols=89  Identities=18%  Similarity=0.269  Sum_probs=73.6

Q ss_pred             HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204         52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL  128 (189)
Q Consensus        52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~  128 (189)
                      .+.+.+++.+.  ++++|||+|||+|.++..+++.+.+|+++|+++.+++.++++....   ++++++++|++++. +..
T Consensus         8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~~   84 (235)
T d1qama_           8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN   84 (235)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhcccccc
Confidence            45666767654  4999999999999999999999999999999999999988765432   48999999999986 434


Q ss_pred             CccEEEECCCCCCCc
Q psy13204        129 QGDVVFLSPPWGGPE  143 (189)
Q Consensus       129 ~~D~v~~npp~~~~~  143 (189)
                      ....|++|.||+..+
T Consensus        85 ~~~~vv~NLPYnIss   99 (235)
T d1qama_          85 QSYKIFGNIPYNIST   99 (235)
T ss_dssp             CCCEEEEECCGGGHH
T ss_pred             ccceeeeeehhhhhH
Confidence            455789999998744

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.28  E-value=1.5e-12  Score=97.40  Aligned_cols=90  Identities=12%  Similarity=-0.024  Sum_probs=70.1

Q ss_pred             CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~  141 (189)
                      +.+|||+|||+|..+..++.. +.+|+++|.++.+++.|+++....   ..+++.++|+.++. +..+||+|++.-.+++
T Consensus        94 ~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h  170 (254)
T d1xtpa_          94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLIVIQWTAIY  170 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCccceEEeeccccc
Confidence            679999999999999987654 678999999999999998776422   36899999999886 5578999999888776


Q ss_pred             Ccccc---ccccccccCc
Q psy13204        142 PEYAR---SSFSIDNIFP  156 (189)
Q Consensus       142 ~~~~~---~~~~~~~~l~  156 (189)
                      ....+   ....+.++|+
T Consensus       171 l~d~d~~~~l~~~~~~Lk  188 (254)
T d1xtpa_         171 LTDADFVKFFKHCQQALT  188 (254)
T ss_dssp             SCHHHHHHHHHHHHHHEE
T ss_pred             cchhhhHHHHHHHHHhcC
Confidence            54332   2234445553

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.27  E-value=2.5e-11  Score=88.02  Aligned_cols=106  Identities=9%  Similarity=-0.002  Sum_probs=75.3

Q ss_pred             cChHHHHHHHHH----hCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc
Q psy13204         48 VTPEKVAQHIAS----RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF  121 (189)
Q Consensus        48 ~~~~~~~~~~~~----~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~  121 (189)
                      +.+..+++.+..    .+++|.+|||+|||+|..+..+++.  ..+|+|+|+++.+++.|++++...   +++.++.+|+
T Consensus        37 p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~  113 (209)
T d1nt2a_          37 PWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDA  113 (209)
T ss_dssp             GGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCT
T ss_pred             CcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeec
Confidence            344456665543    2455999999999999999999986  358999999999999999988765   4889999998


Q ss_pred             ccCC----CCCCccEEEECCCCCCCccccccccccccCcC
Q psy13204        122 FALA----PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       122 ~~~~----~~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~  157 (189)
                      .+..    ....+|+++.|.+... ........+.+.|++
T Consensus       114 ~~~~~~~~~~~~vd~v~~~~~~~~-~~~~~l~~~~~~Lkp  152 (209)
T d1nt2a_         114 SKPWKYSGIVEKVDLIYQDIAQKN-QIEILKANAEFFLKE  152 (209)
T ss_dssp             TCGGGTTTTCCCEEEEEECCCSTT-HHHHHHHHHHHHEEE
T ss_pred             cCccccccccceEEEEEecccChh-hHHHHHHHHHHHhcc
Confidence            7754    2235778888765443 111122344555543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.6e-11  Score=89.99  Aligned_cols=80  Identities=20%  Similarity=0.106  Sum_probs=66.7

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCC----CceEEEeCCcccCC-CCCCccE
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVS----HKIQFIQGDFFALA-PSLQGDV  132 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~-~~~~~D~  132 (189)
                      ++++.+|||+|||+|..+..+++.   ..+|+++|+++++++.|++++...++.    .++.++++|..... +...||+
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~  153 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  153 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence            456899999999999999999886   568999999999999999999876542    47899999988765 4568999


Q ss_pred             EEECCCCC
Q psy13204        133 VFLSPPWG  140 (189)
Q Consensus       133 v~~npp~~  140 (189)
                      |+++....
T Consensus       154 I~~~~~~~  161 (224)
T d1i1na_         154 IHVGAAAP  161 (224)
T ss_dssp             EEECSBBS
T ss_pred             hhhhcchh
Confidence            99975443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.26  E-value=5.1e-11  Score=86.03  Aligned_cols=77  Identities=14%  Similarity=0.029  Sum_probs=66.7

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp  138 (189)
                      ...|||+|||+|.+++.+|+.  ...++|+|+++.++..|.+++...++ .++.++++|+..+.   +..++|.|+++-|
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhccccccc
Confidence            668999999999999999988  67899999999999999999999999 69999999987653   6678998877644


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      -.+
T Consensus       109 ~P~  111 (204)
T d2fcaa1         109 DPW  111 (204)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=99.25  E-value=8.2e-12  Score=91.02  Aligned_cols=85  Identities=26%  Similarity=0.423  Sum_probs=70.2

Q ss_pred             ChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204         49 TPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  123 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  123 (189)
                      ||..++++|++.+..  +.+|+|+|||+|.+...+.+.   ...++|+|+++.++..          .....++++|...
T Consensus         3 TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~   72 (223)
T d2ih2a1           3 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLL   72 (223)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhc
Confidence            788899999988755  889999999999999888754   4679999999865433          2356889999988


Q ss_pred             CCCCCCccEEEECCCCCCCc
Q psy13204        124 LAPSLQGDVVFLSPPWGGPE  143 (189)
Q Consensus       124 ~~~~~~~D~v~~npp~~~~~  143 (189)
                      ......||++++||||....
T Consensus        73 ~~~~~~fd~ii~npP~~~~~   92 (223)
T d2ih2a1          73 WEPGEAFDLILGNPPYGIVG   92 (223)
T ss_dssp             CCCSSCEEEEEECCCCCCBS
T ss_pred             cccccccceecccCcccccc
Confidence            87778999999999998754

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.25  E-value=1.8e-11  Score=89.85  Aligned_cols=121  Identities=17%  Similarity=0.124  Sum_probs=82.7

Q ss_pred             ccccccccccchhhhhhhcCCcccCCCcccccChHHHHHHHHHhC-----CCCCEEEEecCCCChHHHHHHHh---CCeE
Q psy13204         17 VLDTVNNSTGLEYFELTLADADNDATESWYSVTPEKVAQHIASRC-----KASDVVIDGFCGCGGNTIQFAAV---CQKV   88 (189)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vlD~g~G~G~~~~~~~~~---~~~v   88 (189)
                      .+.+.|...|..-+-|.+........+. |.+.+..+++.+..-+     ++|.+|||+|||+|.++..+++.   ..+|
T Consensus        23 ~l~t~n~~~g~~vyge~~~~~~~~e~R~-w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V  101 (227)
T d1g8aa_          23 RIATKNLVPGQRVYGERVIKWEGEEYRI-WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKI  101 (227)
T ss_dssp             EEEEECSSTTCCCTTCCEEEETTEEEEE-CCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEE
T ss_pred             EEEEecCCCCCcccCceEEEcCCeeEEE-ECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEE
Confidence            3445565555554444332111111222 3444556777676544     34999999999999999999987   4689


Q ss_pred             EEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEECCCCCC
Q psy13204         89 ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSPPWGG  141 (189)
Q Consensus        89 ~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~npp~~~  141 (189)
                      +|+|+++.+++.++.+++..   .++..+..|.....    ....+|+|+.|.|...
T Consensus       102 ~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~  155 (227)
T d1g8aa_         102 FGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVIFEDVAQPT  155 (227)
T ss_dssp             EEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTT
T ss_pred             EEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCcccccccccceEEEEEEccccc
Confidence            99999999999999887644   36777888775542    3357999999987754

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.9e-11  Score=92.36  Aligned_cols=81  Identities=23%  Similarity=0.299  Sum_probs=65.9

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh----------CCCCceEEEeCCcccCC--
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVY----------GVSHKIQFIQGDFFALA--  125 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~----------~~~~~~~~~~~d~~~~~--  125 (189)
                      +++|.+|||+|||+|.++..+++.   ..+|+++|+++++++.|++|++..          +..+++++.++|+.+..  
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~  175 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  175 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence            466999999999999999999987   468999999999999999999764          33468999999988764  


Q ss_pred             -CCCCccEEEECCCCCC
Q psy13204        126 -PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 -~~~~~D~v~~npp~~~  141 (189)
                       +...||.|++|.|-.+
T Consensus       176 ~~~~~fD~V~LD~p~P~  192 (324)
T d2b25a1         176 IKSLTFDAVALDMLNPH  192 (324)
T ss_dssp             -----EEEEEECSSSTT
T ss_pred             cCCCCcceEeecCcCHH
Confidence             4457999999977543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.22  E-value=2.2e-10  Score=82.60  Aligned_cols=77  Identities=21%  Similarity=0.115  Sum_probs=67.5

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp  138 (189)
                      ...|||+|||+|.++..+|+.  ...++|+|+++.++..|..++...++ .++.++++|+.++.   +..++|.|+++-|
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhccccc
Confidence            668999999999999999998  67899999999999999999999999 58999999987754   6678999888766


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      -.+
T Consensus       111 dPw  113 (204)
T d1yzha1         111 DPW  113 (204)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            544

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.21  E-value=6.4e-11  Score=86.58  Aligned_cols=88  Identities=19%  Similarity=0.126  Sum_probs=69.7

Q ss_pred             ccChHHHHHHHHHh--CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204         47 SVTPEKVAQHIASR--CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        47 ~~~~~~~~~~~~~~--~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  124 (189)
                      ...|...+. +.+.  ++++.+|||+|||+|.++..+++.+.+|+++|+++++++.|+++...  . .++.++++|....
T Consensus        53 ~~~p~~~a~-ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~--~-~nv~~~~~d~~~g  128 (224)
T d1vbfa_          53 TTALNLGIF-MLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY--Y-NNIKLILGDGTLG  128 (224)
T ss_dssp             ECCHHHHHH-HHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT--C-SSEEEEESCGGGC
T ss_pred             eehhhhHHH-HHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhc--c-cccccccCchhhc
Confidence            344544343 3343  45699999999999999999999999999999999999999987653  3 5899999998765


Q ss_pred             C-CCCCccEEEECCC
Q psy13204        125 A-PSLQGDVVFLSPP  138 (189)
Q Consensus       125 ~-~~~~~D~v~~npp  138 (189)
                      . ...+||+|+++..
T Consensus       129 ~~~~~pfD~Iiv~~a  143 (224)
T d1vbfa_         129 YEEEKPYDRVVVWAT  143 (224)
T ss_dssp             CGGGCCEEEEEESSB
T ss_pred             chhhhhHHHHHhhcc
Confidence            4 4467999998644

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=2.6e-11  Score=92.14  Aligned_cols=72  Identities=21%  Similarity=0.214  Sum_probs=58.1

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCC---ceEEEeCCcccC----CCCCCccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH---KIQFIQGDFFAL----APSLQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~~~~~~~d~~~~----~~~~~~D~v~~  135 (189)
                      +.+|||+|||+|.++..++++|.+|+|+|+|+.|++.|+++....+...   ...+...++...    +....||+|++
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~  135 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC  135 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEE
Confidence            6799999999999999999999999999999999999999987665421   234556665432    24568999887

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.20  E-value=8.5e-11  Score=85.40  Aligned_cols=76  Identities=22%  Similarity=0.269  Sum_probs=67.8

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  137 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~np  137 (189)
                      ++++.+|||+|||+|..+..+++. +.+|+++|.++++++.|++++...++ .++.++++|..+-. ....||+|++..
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~~~pfD~Iiv~~  153 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKAPYDVIIVTA  153 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcccCcceeEEeec
Confidence            455999999999999999999987 77899999999999999999999998 69999999998755 556899999853

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.20  E-value=8.9e-12  Score=91.74  Aligned_cols=87  Identities=17%  Similarity=0.163  Sum_probs=64.5

Q ss_pred             ccChHHHHHHHHHhC-----CCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC
Q psy13204         47 SVTPEKVAQHIASRC-----KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG  119 (189)
Q Consensus        47 ~~~~~~~~~~~~~~~-----~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (189)
                      .+.+..+++.+..-+     ++|.+|||+|||+|..+..+++.+  ..|+|+|+|+.+++.+++++...   .++..+.+
T Consensus        53 ~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~  129 (230)
T d1g8sa_          53 NPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILG  129 (230)
T ss_dssp             CTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEEC
T ss_pred             CCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEE
Confidence            344456777665543     448999999999999999999873  68999999999999998876544   46778888


Q ss_pred             CcccCC--CCCCcc--EEEEC
Q psy13204        120 DFFALA--PSLQGD--VVFLS  136 (189)
Q Consensus       120 d~~~~~--~~~~~D--~v~~n  136 (189)
                      |.....  ....+|  +++.+
T Consensus       130 d~~~~~~~~~~~~~v~~i~~~  150 (230)
T d1g8sa_         130 DANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CTTCGGGGTTTCCCEEEEEEC
T ss_pred             eeccCcccccccceeEEeecc
Confidence            877654  333444  45444

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=6.3e-11  Score=96.97  Aligned_cols=132  Identities=18%  Similarity=0.248  Sum_probs=87.3

Q ss_pred             ChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh----C----------------CeEEEEeCCHHHHHHHHHHHH
Q psy13204         49 TPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV----C----------------QKVISIDIDPAKLRLAQHNAS  106 (189)
Q Consensus        49 ~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~----~----------------~~v~~vD~~~~~~~~a~~~~~  106 (189)
                      ||..+++.|++.+.+  +.+|+|++||+|++.+.+.+.    .                ..++|+|+++.++..|+.|+.
T Consensus       148 TP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~  227 (524)
T d2ar0a1         148 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  227 (524)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             cccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence            677889999888866  779999999999999988653    1                258999999999999999998


Q ss_pred             HhCCCCc----eEEEeCCcccCC--CCCCccEEEECCCCCCCccccccccccccCcCCCCchhHHHHh-hhcC--CceEE
Q psy13204        107 VYGVSHK----IQFIQGDFFALA--PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVA-RGIS--PNVGY  177 (189)
Q Consensus       107 ~~~~~~~----~~~~~~d~~~~~--~~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~--~~~~~  177 (189)
                      .++...+    ..+..++.....  ...+||+|++||||...........  ...+...+-+.++++. ..+.  +..++
T Consensus       228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~--~~~~~~~~~~~Fi~~~l~~Lk~gGr~ai  305 (524)
T d2ar0a1         228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRT--FVHPTSNKQLCFMQHIIETLHPGGRAAV  305 (524)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSC--CSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhh--hccccccccHHHHHHHHHhccccCcEEE
Confidence            8876322    234445544322  4467999999999986544331111  0112211233444444 3332  45677


Q ss_pred             EcCCC
Q psy13204        178 YLPRT  182 (189)
Q Consensus       178 ~lp~~  182 (189)
                      .+|.+
T Consensus       306 IlP~~  310 (524)
T d2ar0a1         306 VVPDN  310 (524)
T ss_dssp             EEEHH
T ss_pred             EEehH
Confidence            77643

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.3e-11  Score=94.11  Aligned_cols=115  Identities=17%  Similarity=0.190  Sum_probs=76.4

Q ss_pred             CCcccccChHHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHHHHh-------CC
Q psy13204         42 TESWYSVTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNASVY-------GV  110 (189)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~~~~~-------~~  110 (189)
                      ...+....+.. ...+.+.+  +++.+|+|+|||+|.+++.+++. + .+++|+|+++.+++.|+.+....       |.
T Consensus       129 ~~~~~e~~~~~-~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~  207 (328)
T d1nw3a_         129 PEVYGETSFDL-VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK  207 (328)
T ss_dssp             TTCCCCCCHHH-HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCchhhhHHHH-HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccc
Confidence            33444455554 44444543  55889999999999999999876 3 47999999999999998776542       33


Q ss_pred             -CCceEEEeCCcccCC-CCC--CccEEEECCCCCCCccccccccccccCcC
Q psy13204        111 -SHKIQFIQGDFFALA-PSL--QGDVVFLSPPWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       111 -~~~~~~~~~d~~~~~-~~~--~~D~v~~npp~~~~~~~~~~~~~~~~l~~  157 (189)
                       ..+++++++|+.+.. ...  .+|+|++|--.+..+.......+.+.+++
T Consensus       208 ~~~~i~~~~gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKp  258 (328)
T d1nw3a_         208 KHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKE  258 (328)
T ss_dssp             CCCCEEEEECCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCT
T ss_pred             cCCceEEEECcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCC
Confidence             247999999998764 111  35788887544433332333344455544

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.15  E-value=6.2e-12  Score=90.87  Aligned_cols=69  Identities=10%  Similarity=0.051  Sum_probs=56.9

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  140 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~  140 (189)
                      .++.+|||+|||+|.++..++    +++|+|+|+.+++.|+++        ++.++++|+.+.. ++.+||+|++.-..+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  102 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTIC  102 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc--------ccccccccccccccccccccccccccccc
Confidence            346689999999999987774    478999999999998763        5799999998886 667899999976655


Q ss_pred             CC
Q psy13204        141 GP  142 (189)
Q Consensus       141 ~~  142 (189)
                      +.
T Consensus       103 h~  104 (208)
T d1vlma_         103 FV  104 (208)
T ss_dssp             GS
T ss_pred             cc
Confidence            54

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.6e-10  Score=86.91  Aligned_cols=91  Identities=20%  Similarity=0.271  Sum_probs=75.5

Q ss_pred             HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204         52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ  129 (189)
Q Consensus        52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  129 (189)
                      .+.+.+++.+.  +++.|+|+|+|.|.++..+++.+.+++++|+++.+++.+++.........+++++.+|+++... ..
T Consensus         8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~-~~   86 (278)
T d1zq9a1           8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-PF   86 (278)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-CC
T ss_pred             HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh-hh
Confidence            45666666554  4889999999999999999999999999999999999999888766554689999999998853 34


Q ss_pred             ccEEEECCCCCCCc
Q psy13204        130 GDVVFLSPPWGGPE  143 (189)
Q Consensus       130 ~D~v~~npp~~~~~  143 (189)
                      .+.|+.|.||+..+
T Consensus        87 ~~~vV~NLPY~Iss  100 (278)
T d1zq9a1          87 FDTCVANLPYQISS  100 (278)
T ss_dssp             CSEEEEECCGGGHH
T ss_pred             hhhhhcchHHHHHH
Confidence            57899999998643

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=99.13  E-value=5.8e-11  Score=87.76  Aligned_cols=80  Identities=19%  Similarity=0.276  Sum_probs=65.9

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCC--------CCceEEEeCCcccCCC--CCCccEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV--------SHKIQFIQGDFFALAP--SLQGDVV  133 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------~~~~~~~~~d~~~~~~--~~~~D~v  133 (189)
                      ..+|+|.+||.|..++.++..|++|+++|.+|......++++.....        ..+++++++|+.+++.  ...||+|
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI  168 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence            45899999999999999999999999999999888777766654321        1378999999988873  3469999


Q ss_pred             EECCCCCCCc
Q psy13204        134 FLSPPWGGPE  143 (189)
Q Consensus       134 ~~npp~~~~~  143 (189)
                      ++||||....
T Consensus       169 YlDPMFp~~~  178 (250)
T d2oyra1         169 YLDPMFPHKQ  178 (250)
T ss_dssp             EECCCCCCCC
T ss_pred             EECCCCcccc
Confidence            9999997544

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.12  E-value=3.1e-11  Score=90.01  Aligned_cols=76  Identities=22%  Similarity=0.302  Sum_probs=65.5

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      ..+|||+|||+|.++..++++  +.+++++|+ +++++.++++....++.++++++.+|+.+..+ ..||+|++.-..+.
T Consensus        81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~-~~~D~v~~~~vlh~  158 (253)
T d1tw3a2          81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-RKADAIILSFVLLN  158 (253)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-SCEEEEEEESCGGG
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc-cchhheeecccccc
Confidence            679999999999999999988  568899998 67999999999999987889999999987544 57999998665554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=99.10  E-value=3.2e-12  Score=94.85  Aligned_cols=89  Identities=21%  Similarity=0.319  Sum_probs=72.4

Q ss_pred             HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCC
Q psy13204         53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQ  129 (189)
Q Consensus        53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~  129 (189)
                      +.+.+++.+  .+++.|||+|||+|.++..+++.+.+|+++|+++.+++.++++...   ..+++++++|+++.. +...
T Consensus        17 ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~~~~~~~   93 (245)
T d1yuba_          17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCCSS
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh---ccchhhhhhhhhccccccce
Confidence            455555655  3488999999999999999999999999999999998887655432   258999999999886 5567


Q ss_pred             ccEEEECCCCCCCcc
Q psy13204        130 GDVVFLSPPWGGPEY  144 (189)
Q Consensus       130 ~D~v~~npp~~~~~~  144 (189)
                      .+.|++|.||+..+.
T Consensus        94 ~~~vv~NLPY~Ist~  108 (245)
T d1yuba_          94 RYKIVGNIPYHLSTQ  108 (245)
T ss_dssp             EEEEEEECCSSSCHH
T ss_pred             eeeEeeeeehhhhHH
Confidence            788999999997653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=99.10  E-value=5.5e-11  Score=87.89  Aligned_cols=106  Identities=17%  Similarity=0.161  Sum_probs=77.0

Q ss_pred             CCcccCCCcccccChHHHHHHHHHh----CCC--CCEEEEecCCCChHHHHHHHhC------------------------
Q psy13204         36 DADNDATESWYSVTPEKVAQHIASR----CKA--SDVVIDGFCGCGGNTIQFAAVC------------------------   85 (189)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~vlD~g~G~G~~~~~~~~~~------------------------   85 (189)
                      ++..+-+..++...+..+.+.++..    ...  +..++|++||+|++.++++...                        
T Consensus        17 sg~~L~~~~~~~~~~~~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w   96 (249)
T d1o9ga_          17 CGVVLHSAPGYPAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNL   96 (249)
T ss_dssp             TTTSSCCBTTBCCCCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHH
T ss_pred             CCCccccCCCCCCcchHHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHH
Confidence            4444444455555555555544332    222  5579999999999999997742                        


Q ss_pred             ------------------CeEEEEeCCHHHHHHH---HHHHHHhCCCCceEEEeCCcccCC------CCCCccEEEECCC
Q psy13204         86 ------------------QKVISIDIDPAKLRLA---QHNASVYGVSHKIQFIQGDFFALA------PSLQGDVVFLSPP  138 (189)
Q Consensus        86 ------------------~~v~~vD~~~~~~~~a---~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v~~npp  138 (189)
                                        ..++|.|+++.+++.|   ++|+...|+...+.+.+.|+++..      +....++|++|||
T Consensus        97 ~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP  176 (249)
T d1o9ga_          97 ALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP  176 (249)
T ss_dssp             HTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC
T ss_pred             HHHHHHHHHHHhccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCC
Confidence                              1457889999999888   468889999878999999987654      3456789999999


Q ss_pred             CCC
Q psy13204        139 WGG  141 (189)
Q Consensus       139 ~~~  141 (189)
                      |+.
T Consensus       177 YGE  179 (249)
T d1o9ga_         177 YGE  179 (249)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            986

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=3.3e-10  Score=82.28  Aligned_cols=84  Identities=17%  Similarity=0.338  Sum_probs=71.5

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----  125 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----  125 (189)
                      +...++...+ +++|||+|||+|..++.++++   +.+++++|+++++.+.|+.++...|+.++++++.+|+.+.+    
T Consensus        47 lL~~lv~~~k-pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~  125 (214)
T d2cl5a1          47 IMDAVIREYS-PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLK  125 (214)
T ss_dssp             HHHHHHHHHC-CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHH
T ss_pred             HHHHHHHhhC-CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchh
Confidence            4444555545 789999999999999999986   67999999999999999999999999878999999998764    


Q ss_pred             ---CCCCccEEEECC
Q psy13204        126 ---PSLQGDVVFLSP  137 (189)
Q Consensus       126 ---~~~~~D~v~~np  137 (189)
                         ....||+|++|.
T Consensus       126 ~~~~~~~~D~ifiD~  140 (214)
T d2cl5a1         126 KKYDVDTLDMVFLDH  140 (214)
T ss_dssp             HHSCCCCEEEEEECS
T ss_pred             hcccccccceeeecc
Confidence               235799999983

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.05  E-value=9.2e-10  Score=80.31  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=64.1

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh--------CCeEEEEeCCHHHHHHHHHHHHHh-----CCCCceEEEeCCcccCC-C
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV--------CQKVISIDIDPAKLRLAQHNASVY-----GVSHKIQFIQGDFFALA-P  126 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~-~  126 (189)
                      ++++.+|||+|||+|..+..+++.        +.+|+++|.++++++.|++|+...     +. .++.++++|..+.. +
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~-~nv~~~~~d~~~~~~~  156 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYPP  156 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCGG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc-cEEEEEeccccccccc
Confidence            456999999999999999999876        248999999999999999887543     33 48999999988765 4


Q ss_pred             CCCccEEEECCCC
Q psy13204        127 SLQGDVVFLSPPW  139 (189)
Q Consensus       127 ~~~~D~v~~npp~  139 (189)
                      ...||+|+++...
T Consensus       157 ~~~fD~Iiv~~a~  169 (223)
T d1r18a_         157 NAPYNAIHVGAAA  169 (223)
T ss_dssp             GCSEEEEEECSCB
T ss_pred             ccceeeEEEEeec
Confidence            5689999996543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.1e-09  Score=79.60  Aligned_cols=96  Identities=15%  Similarity=0.059  Sum_probs=78.1

Q ss_pred             cccccChHH--HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEe
Q psy13204         44 SWYSVTPEK--VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  118 (189)
Q Consensus        44 ~~~~~~~~~--~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~  118 (189)
                      ...+..|++  +...++...+ .++|||+|||+|..++++++.   +.+++++|.+++..+.|++++...|+.++++++.
T Consensus        39 ~~~~i~~~~g~lL~~L~~~~~-~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~  117 (219)
T d2avda1          39 GDSMMTCEQAQLLANLARLIQ-AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL  117 (219)
T ss_dssp             GGGSCCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CCcccCHHHHHHHHHHHHccC-CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEE
Confidence            345566653  3444454444 889999999999999999986   6799999999999999999999999988899999


Q ss_pred             CCcccCC-------CCCCccEEEECCCCC
Q psy13204        119 GDFFALA-------PSLQGDVVFLSPPWG  140 (189)
Q Consensus       119 ~d~~~~~-------~~~~~D~v~~npp~~  140 (189)
                      +|+.+..       ...+||+|+.|.-..
T Consensus       118 Gda~e~l~~~~~~~~~~~fD~ifiD~dk~  146 (219)
T d2avda1         118 KPALETLDELLAAGEAGTFDVAVVDADKE  146 (219)
T ss_dssp             SCHHHHHHHHHHTTCTTCEEEEEECSCST
T ss_pred             eehhhcchhhhhhcccCCccEEEEeCCHH
Confidence            9987754       345899999986554

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.2e-09  Score=82.83  Aligned_cols=84  Identities=25%  Similarity=0.388  Sum_probs=69.6

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC----CCccEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS----LQGDVVF  134 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~D~v~  134 (189)
                      .++.+|||+|||.|+-+..++..   ...++++|+++.-++.+++++...|+ .++.+...|.....+.    ..||.|+
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-~~~~~~~~d~~~~~~~~~~~~~fD~VL  171 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHYIL  171 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-cceeeeehhhhhhcccccccceeeEEe
Confidence            44999999999999999888764   56899999999999999999999999 5899999998876532    4699999


Q ss_pred             ECCCCCCCcccc
Q psy13204        135 LSPPWGGPEYAR  146 (189)
Q Consensus       135 ~npp~~~~~~~~  146 (189)
                      +||||.+.+...
T Consensus       172 ~DaPCSg~G~~~  183 (293)
T d2b9ea1         172 LDPSCSGSGMPS  183 (293)
T ss_dssp             ECCCCCC-----
T ss_pred             ecCcccchhhhc
Confidence            999999977554

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=7.3e-10  Score=79.00  Aligned_cols=77  Identities=16%  Similarity=0.292  Sum_probs=65.9

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------CCCCccEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVV  133 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v  133 (189)
                      .++..++|++||+|+.+..+++.  +.+|+|+|.+++|++.|++++...+.  ++.++++++.+..      ...++|.|
T Consensus        22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~--r~~~~~~~f~~~~~~~~~~~~~~vdgI   99 (192)
T d1m6ya2          22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSD--RVSLFKVSYREADFLLKTLGIEKVDGI   99 (192)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTT--TEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccc--cccchhHHHhhHHHHHHHcCCCCccee
Confidence            34889999999999999999886  67899999999999999999877653  8999999987643      34689999


Q ss_pred             EECCCCC
Q psy13204        134 FLSPPWG  140 (189)
Q Consensus       134 ~~npp~~  140 (189)
                      +.|..+.
T Consensus       100 l~DlGvS  106 (192)
T d1m6ya2         100 LMDLGVS  106 (192)
T ss_dssp             EEECSCC
T ss_pred             eeccchh
Confidence            9997764

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=5.1e-10  Score=83.07  Aligned_cols=90  Identities=17%  Similarity=0.069  Sum_probs=70.2

Q ss_pred             HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC--
Q psy13204         52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--  127 (189)
Q Consensus        52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--  127 (189)
                      .+.+.+++.+.  +++.|+|+|||.|.++..+++.+.+|+++|+++.+++.++......   ++++++++|++++...  
T Consensus         8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l~~~~~~~   84 (252)
T d1qyra_           8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGEL   84 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhc---cchhHHhhhhhhhccccc
Confidence            34555555543  4889999999999999999999999999999999999987643222   4799999999987521  


Q ss_pred             ----CCccEEEECCCCCCCcc
Q psy13204        128 ----LQGDVVFLSPPWGGPEY  144 (189)
Q Consensus       128 ----~~~D~v~~npp~~~~~~  144 (189)
                          ...-.|+.|.||...+.
T Consensus        85 ~~~~~~~~~vvgNlPY~Iss~  105 (252)
T d1qyra_          85 AEKMGQPLRVFGNLPYNISTP  105 (252)
T ss_dssp             HHHHTSCEEEEEECCTTTHHH
T ss_pred             ccccCCCeEEEecchHHHHHH
Confidence                12347899999998653

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=2e-09  Score=84.85  Aligned_cols=111  Identities=14%  Similarity=0.110  Sum_probs=69.0

Q ss_pred             cccChHHHHHHHHHh--CCCCCEEEEecCCCChHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHHHHhC-------CC-Cc
Q psy13204         46 YSVTPEKVAQHIASR--CKASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNASVYG-------VS-HK  113 (189)
Q Consensus        46 ~~~~~~~~~~~~~~~--~~~~~~vlD~g~G~G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~-------~~-~~  113 (189)
                      -...+..+.+ +.+.  ++++++|+|+|||+|..++.+|.. + .+|+|+|+++.+++.|++++...+       .. ..
T Consensus       198 GEl~~~~i~~-Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~  276 (406)
T d1u2za_         198 GELLPNFLSD-VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN  276 (406)
T ss_dssp             CCBCHHHHHH-HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC
T ss_pred             ccCCHHHHHH-HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence            3345554444 4444  456899999999999999999876 4 589999999999999998876532       11 12


Q ss_pred             eEE-EeCCcccCC----CCCCccEEEECCCCCCCccccccccccccCcC
Q psy13204        114 IQF-IQGDFFALA----PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPE  157 (189)
Q Consensus       114 ~~~-~~~d~~~~~----~~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~  157 (189)
                      ..+ ..++..+..    .-..+|+|++|--....+....+..+...|++
T Consensus       277 ~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKP  325 (406)
T d1u2za_         277 VEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKV  325 (406)
T ss_dssp             EEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCT
T ss_pred             ceeeeeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCC
Confidence            232 344443322    11357888886432222222233445556655

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.90  E-value=1.9e-09  Score=78.72  Aligned_cols=95  Identities=16%  Similarity=0.192  Sum_probs=77.8

Q ss_pred             cccccChH--HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEe
Q psy13204         44 SWYSVTPE--KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  118 (189)
Q Consensus        44 ~~~~~~~~--~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~  118 (189)
                      ...+..++  ++...++...+ .++||++|+++|..++++++.   +++++.+|.+++..+.|++++...|+.++++++.
T Consensus        39 ~~m~~~~~~g~~L~~L~~~~~-~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~  117 (227)
T d1susa1          39 NIMTTSADEGQFLSMLLKLIN-AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE  117 (227)
T ss_dssp             GGGSCCHHHHHHHHHHHHHHT-CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred             cccccCHHHHHHHHHHHHhcC-CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee
Confidence            33455664  35555555555 889999999999999999976   6799999999999999999999999987899999


Q ss_pred             CCcccCCC--------CCCccEEEECCCC
Q psy13204        119 GDFFALAP--------SLQGDVVFLSPPW  139 (189)
Q Consensus       119 ~d~~~~~~--------~~~~D~v~~npp~  139 (189)
                      +++.+.++        ...||+|++|.--
T Consensus       118 g~a~~~L~~l~~~~~~~~~fD~iFiDa~k  146 (227)
T d1susa1         118 GPALPVLDEMIKDEKNHGSYDFIFVDADK  146 (227)
T ss_dssp             SCHHHHHHHHHHCGGGTTCBSEEEECSCS
T ss_pred             hHHHHHHHHHHhccccCCceeEEEeccch
Confidence            99987651        3479999998543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.90  E-value=8.5e-09  Score=76.65  Aligned_cols=77  Identities=25%  Similarity=0.299  Sum_probs=66.1

Q ss_pred             CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ...+|||+|||+|.++..++++  ..+++++|+ |++++.+++++...++.+++.++.+|..+..+ ..+|+|++.-.++
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p-~~~D~v~~~~vLh  158 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP-VTADVVLLSFVLL  158 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-CCEEEEEEESCGG
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccc-ccchhhhcccccc
Confidence            3679999999999999999998  678999998 88999999999999987889999999887544 4699999965555


Q ss_pred             C
Q psy13204        141 G  141 (189)
Q Consensus       141 ~  141 (189)
                      .
T Consensus       159 ~  159 (256)
T d1qzza2         159 N  159 (256)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.86  E-value=2e-08  Score=76.67  Aligned_cols=84  Identities=23%  Similarity=0.344  Sum_probs=72.5

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  137 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~np  137 (189)
                      ++|.+|||+|||.|+=+..++..   ...++++|.++.-++.++.++...+. .++.+...|..... ....||.|++|+
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~~~~~~~fD~ILvDa  193 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGELNVEFDKILLDA  193 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hccccccccccccccccccccEEEEcc
Confidence            44999999999999998888765   45799999999999999999999998 57888888887765 356899999999


Q ss_pred             CCCCCcccc
Q psy13204        138 PWGGPEYAR  146 (189)
Q Consensus       138 p~~~~~~~~  146 (189)
                      ||.+.+...
T Consensus       194 PCSg~G~~~  202 (313)
T d1ixka_         194 PCTGSGTIH  202 (313)
T ss_dssp             CTTSTTTCC
T ss_pred             ccccCCcee
Confidence            999987665

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=1.1e-08  Score=77.11  Aligned_cols=88  Identities=19%  Similarity=0.246  Sum_probs=70.0

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSP  137 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~np  137 (189)
                      +++.+|||+|+|.|+-+..++..  ...++++|+++.-++..+++++..|+ .++.+...|.....  ....||.|++|+
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~-~~~~~~~~~~~~~~~~~~~~fd~IL~Da  179 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQQFDRILLDA  179 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc-cceeeeccccccchhcccccccEEEEec
Confidence            44899999999999999998876  36799999999999999999999998 34555555443221  446799999999


Q ss_pred             CCCCCcccccccc
Q psy13204        138 PWGGPEYARSSFS  150 (189)
Q Consensus       138 p~~~~~~~~~~~~  150 (189)
                      ||.+.+...+..+
T Consensus       180 PCSg~G~~rr~p~  192 (284)
T d1sqga2         180 PCSATGVIRRHPD  192 (284)
T ss_dssp             CCCCGGGTTTCTT
T ss_pred             cccccCccccccc
Confidence            9999886664444

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.9e-09  Score=81.01  Aligned_cols=91  Identities=5%  Similarity=-0.026  Sum_probs=62.3

Q ss_pred             EEEEecCCCChHHHHHHHh--------CCeEEEEeCCHHHHHHHHHHHHHhCCCCc--eEEEeCCcccC-------CCCC
Q psy13204         66 VVIDGFCGCGGNTIQFAAV--------CQKVISIDIDPAKLRLAQHNASVYGVSHK--IQFIQGDFFAL-------APSL  128 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~--~~~~~~d~~~~-------~~~~  128 (189)
                      +|||+|||+|.++..++..        +.+++|+|+|+.+++.|++++.......+  ..+...++.+.       .+..
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ  122 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence            7999999999998887653        23679999999999999998765432223  34555555432       2567


Q ss_pred             CccEEEECCCCCCCcccc-ccccccccCc
Q psy13204        129 QGDVVFLSPPWGGPEYAR-SSFSIDNIFP  156 (189)
Q Consensus       129 ~~D~v~~npp~~~~~~~~-~~~~~~~~l~  156 (189)
                      +||+|++.-.+++..... ....+.++|+
T Consensus       123 ~fD~I~~~~~l~~~~d~~~~l~~l~~~Lk  151 (280)
T d1jqea_         123 KWDFIHMIQMLYYVKDIPATLKFFHSLLG  151 (280)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHTEE
T ss_pred             ceeEEEEccceecCCCHHHHHHHHHhhCC
Confidence            899999977766654333 3334555553

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=98.75  E-value=7.1e-08  Score=73.28  Aligned_cols=103  Identities=19%  Similarity=0.246  Sum_probs=74.9

Q ss_pred             EEEEecCCCChHHHHHHHhCCeEE-EEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCCCC
Q psy13204         66 VVIDGFCGCGGNTIQFAAVCQKVI-SIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~~~~~v~-~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~~  142 (189)
                      +|+|++||.|+++..+.++|.+++ ++|+++.+.+..+.|.       ...++++|+.+..  .-..+|+++..|||+..
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-------~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~f   74 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSDEFPKCDGIIGGPPCQSW   74 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-------CSEEEESCTTTSCGGGSCCCSEEEECCCCTTT
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-------CCCCccCChhhCCHhHcccccEEeeccccccc
Confidence            589999999999999999898865 8999999998887774       3466789988875  23468999999999997


Q ss_pred             ccccccccccccCcCCCCch-hHHHHhhhcCCceEEE
Q psy13204        143 EYARSSFSIDNIFPEQGGGR-RLFQVARGISPNVGYY  178 (189)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~  178 (189)
                      +.........+   +++..+ .++.....+.|...++
T Consensus        75 S~ag~~~g~~d---~r~~l~~~~~~~i~~~~Pk~~~l  108 (324)
T d1dcta_          75 SEGGSLRGIDD---PRGKLFYEYIRILKQKKPIFFLA  108 (324)
T ss_dssp             SSSSCCCCSSS---HHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             ccccccccccc---cccchHHHHHHHHHhhCCceeec
Confidence            76663322221   111122 5566667777765543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.3e-09  Score=78.43  Aligned_cols=46  Identities=13%  Similarity=-0.075  Sum_probs=40.0

Q ss_pred             CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYG  109 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~  109 (189)
                      +.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+
T Consensus        52 g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          52 GDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             CCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcc
Confidence            77999999999999888876644 79999999999999999987554

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.70  E-value=5.4e-08  Score=75.88  Aligned_cols=83  Identities=20%  Similarity=0.223  Sum_probs=65.3

Q ss_pred             HHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCC--------------ceEEEeCC
Q psy13204         57 IASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSH--------------KIQFIQGD  120 (189)
Q Consensus        57 ~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~d  120 (189)
                      ++...+ +.+|||.+||+|..++..+..  ...|+++|+|+.+++.+++|++.++...              .+.+.+.|
T Consensus        40 ~~~~~~-~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~D  118 (375)
T d2dula1          40 LLNILN-PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDD  118 (375)
T ss_dssp             HHHHHC-CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESC
T ss_pred             HHHHhC-CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhh
Confidence            344444 889999999999999987664  3479999999999999999999997632              35677777


Q ss_pred             cccCC--CCCCccEEEECCCCCC
Q psy13204        121 FFALA--PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       121 ~~~~~--~~~~~D~v~~npp~~~  141 (189)
                      +....  ....||+|.+|| |+.
T Consensus       119 a~~~~~~~~~~fDvIDiDP-fGs  140 (375)
T d2dula1         119 ANRLMAERHRYFHFIDLDP-FGS  140 (375)
T ss_dssp             HHHHHHHSTTCEEEEEECC-SSC
T ss_pred             hhhhhHhhcCcCCcccCCC-CCC
Confidence            76554  456799999996 654

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=98.68  E-value=9.7e-08  Score=72.87  Aligned_cols=104  Identities=16%  Similarity=0.187  Sum_probs=75.3

Q ss_pred             CCEEEEecCCCChHHHHHHHhCCeE-EEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVCQKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWG  140 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~  140 (189)
                      +-+|+|++||.|+++..+.++|.++ .++|+++.+++..+.|...        ..++|+.+..  ....+|+++..|||+
T Consensus        11 ~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~~~~~Dll~ggpPCq   82 (327)
T d2c7pa1          11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhhcceeeeeecccccc
Confidence            6799999999999999999999876 5699999999999888741        1257777765  224689999999999


Q ss_pred             CCccccccccccccCcCCCCch-hHHHHhhhcCCceEEE
Q psy13204        141 GPEYARSSFSIDNIFPEQGGGR-RLFQVARGISPNVGYY  178 (189)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~  178 (189)
                      ..+.........+   ++...+ .++.......|...++
T Consensus        83 ~fS~ag~~~g~~d---~r~~l~~~~~~~i~~~kP~~~~l  118 (327)
T d2c7pa1          83 AFSISGKQKGFED---SRGTLFFDIARIVREKKPKVVFM  118 (327)
T ss_dssp             TTCTTSCCCGGGS---TTSCHHHHHHHHHHHHCCSEEEE
T ss_pred             hhhhhhhhcCCcc---cchhHHHHHHHHHhccCCcEEec
Confidence            9876663222211   111122 6666777777776553

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.55  E-value=1.2e-07  Score=71.04  Aligned_cols=82  Identities=18%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             HhCCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHh---------CCCCceEEEeCCcccCC-CC
Q psy13204         59 SRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY---------GVSHKIQFIQGDFFALA-PS  127 (189)
Q Consensus        59 ~~~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~---------~~~~~~~~~~~d~~~~~-~~  127 (189)
                      ...+...+||-+|+|.|..+.++.+. ..+|+.||++++.++.|++.....         .-..+++++.+|+.++. ..
T Consensus        68 ~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~  147 (276)
T d1mjfa_          68 LAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  147 (276)
T ss_dssp             HHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             hcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence            34455889999999999999998776 457999999999999998765322         12357999999998876 44


Q ss_pred             CCccEEEECCCCC
Q psy13204        128 LQGDVVFLSPPWG  140 (189)
Q Consensus       128 ~~~D~v~~npp~~  140 (189)
                      .+||+|++|++-.
T Consensus       148 ~~yDvIi~D~~~~  160 (276)
T d1mjfa_         148 RGFDVIIADSTDP  160 (276)
T ss_dssp             CCEEEEEEECCCC
T ss_pred             CCCCEEEEeCCCC
Confidence            6899999998764

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=1.9e-07  Score=71.10  Aligned_cols=79  Identities=18%  Similarity=0.176  Sum_probs=64.7

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh--C--CCCceEEEeCCcccCC--CCCCcc
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--G--VSHKIQFIQGDFFALA--PSLQGD  131 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~--~~~~~~~~~~d~~~~~--~~~~~D  131 (189)
                      ..+..++||.+|.|.|..+.++.+.  ..+|+.||++++.++.|++.+...  +  -..+++++.+|+.++.  ...+||
T Consensus        74 ~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          74 THPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             hCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            3455889999999999999999776  468999999999999999887432  1  1247999999999886  456899


Q ss_pred             EEEECCC
Q psy13204        132 VVFLSPP  138 (189)
Q Consensus       132 ~v~~npp  138 (189)
                      +|++|++
T Consensus       154 vIi~D~~  160 (312)
T d1uira_         154 VVIIDLT  160 (312)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9999874

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.6e-07  Score=69.85  Aligned_cols=44  Identities=11%  Similarity=-0.065  Sum_probs=37.4

Q ss_pred             CCEEEEecCCCChHHHHHH-HhCCeEEEEeCCHHHHHHHHHHHHH
Q psy13204         64 SDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASV  107 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~  107 (189)
                      +.++||+|||+|.+++..+ +.+.+|+|+|+++.+++.+++++..
T Consensus        55 g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          55 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhc
Confidence            7899999999998875444 5577899999999999999987653

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.4e-07  Score=72.25  Aligned_cols=76  Identities=20%  Similarity=0.315  Sum_probs=55.5

Q ss_pred             CEEEEecCCCChHHHHHHHhCC--e-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEECC
Q psy13204         65 DVVIDGFCGCGGNTIQFAAVCQ--K-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSP  137 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~~~~--~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~np  137 (189)
                      -+|+|++||.|+++..+.+.|.  + +.++|+++.+++..+.|..      ...++++|+.+..    +...+|+++..|
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~~~~~Dll~ggp   76 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcCCCCccEEEeec
Confidence            4699999999999999988875  4 5689999999998887752      5677888888765    223689999999


Q ss_pred             CCCCCcccc
Q psy13204        138 PWGGPEYAR  146 (189)
Q Consensus       138 p~~~~~~~~  146 (189)
                      ||+..+...
T Consensus        77 PCq~fS~ag   85 (343)
T d1g55a_          77 PCQPFTRIG   85 (343)
T ss_dssp             C--------
T ss_pred             ccccccccc
Confidence            999977665

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=7.7e-07  Score=63.65  Aligned_cols=71  Identities=17%  Similarity=0.104  Sum_probs=64.1

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~  135 (189)
                      +..++|+|+|.|.-++.+|-.  ..+++.+|.+..-+...++-....++ .+++++++.+.+.....+||+|++
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~~~~fD~V~s  138 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFPSEPPFDGVIS  138 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSCCCSCEEEEEC
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhccccccceehh
Confidence            679999999999999999865  57899999999999999999999998 589999999999877678999887

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=3.6e-07  Score=68.84  Aligned_cols=81  Identities=12%  Similarity=0.042  Sum_probs=64.7

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC--C-CCceEEEeCCcccCC--CCCCccE
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALA--PSLQGDV  132 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~--~~~~~D~  132 (189)
                      ..+..++||=+|.|.|+.+.++.+.  ..+|+++|+++..++.|++......  + ..+++++.+|+.++.  ...+||+
T Consensus        86 ~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  165 (295)
T d1inla_          86 LHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV  165 (295)
T ss_dssp             HSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             hCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence            3455889999999999999999886  4689999999999999998765432  1 247999999999887  4568999


Q ss_pred             EEECCCCC
Q psy13204        133 VFLSPPWG  140 (189)
Q Consensus       133 v~~npp~~  140 (189)
                      |++|++-.
T Consensus       166 Ii~D~~dp  173 (295)
T d1inla_         166 IIIDSTDP  173 (295)
T ss_dssp             EEEEC---
T ss_pred             EEEcCCCC
Confidence            99997653

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=3.3e-07  Score=64.34  Aligned_cols=74  Identities=20%  Similarity=0.236  Sum_probs=61.2

Q ss_pred             CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------CCCCccEEEE
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVVFL  135 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v~~  135 (189)
                      .++..++|.++|.|+.+..+.+.+.+|+|+|.++++++.++..     ...++.+++++..++.      ....+|.|++
T Consensus        17 ~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~   91 (182)
T d1wg8a2          17 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALGVERVDGILA   91 (182)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcCCCccCEEEE
Confidence            4588999999999999999999889999999999999988753     1247899999877653      3357999999


Q ss_pred             CCCCC
Q psy13204        136 SPPWG  140 (189)
Q Consensus       136 npp~~  140 (189)
                      |.-+.
T Consensus        92 DLGvS   96 (182)
T d1wg8a2          92 DLGVS   96 (182)
T ss_dssp             ECSCC
T ss_pred             EccCC
Confidence            97554

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.42  E-value=6.8e-07  Score=66.70  Aligned_cols=88  Identities=18%  Similarity=0.140  Sum_probs=69.1

Q ss_pred             HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh-C-C-CCceEEEeCCcccCC--
Q psy13204         53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY-G-V-SHKIQFIQGDFFALA--  125 (189)
Q Consensus        53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~-~-~-~~~~~~~~~d~~~~~--  125 (189)
                      +....+...+..++||-+|.|.|..+.++.+.  ..+++.+|++++.++.|++..... + . ..+++++.+|+..+.  
T Consensus        65 l~h~~l~~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~  144 (274)
T d1iy9a_          65 VAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK  144 (274)
T ss_dssp             HHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT
T ss_pred             hccchhhccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh
Confidence            33333344455889999999999999999886  468999999999999999876542 2 1 247999999998876  


Q ss_pred             CCCCccEEEECCCCC
Q psy13204        126 PSLQGDVVFLSPPWG  140 (189)
Q Consensus       126 ~~~~~D~v~~npp~~  140 (189)
                      ...+||+|+.|++-.
T Consensus       145 ~~~~yDvIi~D~~~p  159 (274)
T d1iy9a_         145 SENQYDVIMVDSTEP  159 (274)
T ss_dssp             CCSCEEEEEESCSSC
T ss_pred             cCCCCCEEEEcCCCC
Confidence            456899999997654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=98.36  E-value=6.9e-07  Score=65.45  Aligned_cols=57  Identities=21%  Similarity=0.379  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHhC-CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Q psy13204         50 PEKVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS  106 (189)
Q Consensus        50 ~~~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~  106 (189)
                      |..+.+.+.... .+|+.|||++||+|+.+.++.+.|.+.+|+|++++.++.|++++.
T Consensus       198 P~~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         198 PRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            445666655555 459999999999999999999999999999999999999998874

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.35  E-value=7.2e-07  Score=67.55  Aligned_cols=89  Identities=19%  Similarity=0.114  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCC---CCceEEEeCCcccCC
Q psy13204         51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGV---SHKIQFIQGDFFALA  125 (189)
Q Consensus        51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~  125 (189)
                      +.+...-+...+..++||-+|.|.|+.+.++.+.  ..+|+.+|++++.++.|++.......   ..+++++.+|+.++.
T Consensus        94 E~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l  173 (312)
T d2b2ca1          94 EMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFL  173 (312)
T ss_dssp             HHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHH
T ss_pred             HHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHH
Confidence            3444333334555889999999999999999886  36899999999999999987643221   147899999999887


Q ss_pred             --CCCCccEEEECCCC
Q psy13204        126 --PSLQGDVVFLSPPW  139 (189)
Q Consensus       126 --~~~~~D~v~~npp~  139 (189)
                        ...+||+|++|++-
T Consensus       174 ~~~~~~yDvII~D~~d  189 (312)
T d2b2ca1         174 KNHKNEFDVIITDSSD  189 (312)
T ss_dssp             HHCTTCEEEEEECCC-
T ss_pred             HhCCCCCCEEEEcCCC
Confidence              55689999999764

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=9.7e-07  Score=66.19  Aligned_cols=80  Identities=18%  Similarity=0.136  Sum_probs=64.9

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC--C-CCceEEEeCCcccCC--CCCCccE
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALA--PSLQGDV  132 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~--~~~~~D~  132 (189)
                      ..+..++||=+|.|.|..+.++.+.  ..+++.+|++++.++.|++......  . ..+++++.+|+..++  ...+||+
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV  154 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence            3345889999999999999999886  5689999999999999998765321  1 248999999999887  4468999


Q ss_pred             EEECCCC
Q psy13204        133 VFLSPPW  139 (189)
Q Consensus       133 v~~npp~  139 (189)
                      |++|++-
T Consensus       155 Ii~D~~~  161 (285)
T d2o07a1         155 IITDSSD  161 (285)
T ss_dssp             EEEECC-
T ss_pred             EEEcCCC
Confidence            9999643

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.25  E-value=2.1e-06  Score=64.47  Aligned_cols=80  Identities=15%  Similarity=0.097  Sum_probs=64.7

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC---CCCceEEEeCCcccCC---CCCCcc
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG---VSHKIQFIQGDFFALA---PSLQGD  131 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~---~~~~~D  131 (189)
                      ..+..++||=+|.|.|..+.++.+.  ..+++.+|++++.++.|++......   -..+++++.+|+.++.   ...+||
T Consensus        77 ~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD  156 (290)
T d1xj5a_          77 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD  156 (290)
T ss_dssp             TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             hCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence            3355789999999999999999887  3589999999999999998764321   1247999999998876   345899


Q ss_pred             EEEECCCC
Q psy13204        132 VVFLSPPW  139 (189)
Q Consensus       132 ~v~~npp~  139 (189)
                      +|+.|.+-
T Consensus       157 vIi~D~~d  164 (290)
T d1xj5a_         157 AVIVDSSD  164 (290)
T ss_dssp             EEEECCCC
T ss_pred             EEEEcCCC
Confidence            99999764

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.23  E-value=1.6e-06  Score=64.23  Aligned_cols=60  Identities=18%  Similarity=0.230  Sum_probs=51.0

Q ss_pred             ChHHHHHHHHHhC-CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Q psy13204         49 TPEKVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY  108 (189)
Q Consensus        49 ~~~~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  108 (189)
                      -|..+.+.+.... .+|+.|||++||+|+.+.++.+.|.+.+|+|++++.++.|++++...
T Consensus       192 kP~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         192 KPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            3456666665554 45999999999999999999999999999999999999999988643

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=98.20  E-value=1e-06  Score=66.42  Aligned_cols=58  Identities=19%  Similarity=0.282  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHh-CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Q psy13204         50 PEKVAQHIASR-CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV  107 (189)
Q Consensus        50 ~~~~~~~~~~~-~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~  107 (189)
                      |..+.+.+... ..+|+.|||++||+|+.+.++...|.+.+|+|++++.++.|++++..
T Consensus       236 P~~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         236 PAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             chHHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            44555555444 45599999999999999999999999999999999999999877643

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=1.2e-05  Score=61.09  Aligned_cols=76  Identities=13%  Similarity=0.160  Sum_probs=58.0

Q ss_pred             CCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------CC--------
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PS--------  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~--------  127 (189)
                      +..|+|+|.|.|.++..+...+  .+++++|+++...+..++...  +  ++++++++|+..+.      ..        
T Consensus        44 ~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~--~~~~ii~~D~l~~~~~~~l~~~~~~~~~~~  119 (322)
T d1i4wa_          44 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--G--SPLQILKRDPYDWSTYSNLIDEERIFVPEV  119 (322)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--T--SSCEEECSCTTCHHHHHHHTTTTCSSCCCC
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--C--CCcEEEeCchhhcchhhhhhhccccccccc
Confidence            6789999999999999998763  489999999999998876543  2  47899999987642      00        


Q ss_pred             CC------ccEEEECCCCCCCc
Q psy13204        128 LQ------GDVVFLSPPWGGPE  143 (189)
Q Consensus       128 ~~------~D~v~~npp~~~~~  143 (189)
                      ..      -=.|+.|.||...+
T Consensus       120 ~~~~~~~~~~~vvaNLPy~iss  141 (322)
T d1i4wa_         120 QSSDHINDKFLTVANVTGEGSE  141 (322)
T ss_dssp             CCTTSEEEEEEEEEECCSTTHH
T ss_pred             ccccccCCceEEEEeCCchhhH
Confidence            00      11489999998643

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.86  E-value=4.7e-05  Score=55.21  Aligned_cols=71  Identities=11%  Similarity=0.113  Sum_probs=61.4

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----CCCccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~  135 (189)
                      +.+++|+|+|.|.-++.++-.  ..+++.+|-+..-+...++-....++ .++.++++.+++...    ...||+|++
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-CCcEEEeehhhhccccccccccceEEEE
Confidence            679999999999999999764  67899999999999999999999999 589999998877642    247999998

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=5.2e-05  Score=52.71  Aligned_cols=70  Identities=21%  Similarity=0.173  Sum_probs=53.7

Q ss_pred             hCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---------CC
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------PS  127 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~  127 (189)
                      .++++..|+|+||+.|+++..+++.   ...++++|+.+.           ..+ .++.++++|..+..         ..
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeecccccchhhhhhhhhccC
Confidence            4566899999999999999998875   467999998761           223 47899999987633         34


Q ss_pred             CCccEEEECCCCCC
Q psy13204        128 LQGDVVFLSPPWGG  141 (189)
Q Consensus       128 ~~~D~v~~npp~~~  141 (189)
                      ..+|+|++|-....
T Consensus        87 ~~~DlVlSD~ap~~  100 (180)
T d1ej0a_          87 SKVQVVMSDMAPNM  100 (180)
T ss_dssp             CCEEEEEECCCCCC
T ss_pred             cceeEEEecccchh
Confidence            57999999955443

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.54  E-value=0.00019  Score=52.17  Aligned_cols=67  Identities=21%  Similarity=0.273  Sum_probs=52.1

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  140 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~  140 (189)
                      ..+|+|+|||+|.++..++++  ..+++..|+ |+.++.       .+..++++++.+|+++..  ..+|++++.--.|
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~~~~rv~~~~gD~f~~~--p~aD~~~l~~vLH  149 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVEN-------LSGSNNLTYVGGDMFTSI--PNADAVLLKYILH  149 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CCCBTTEEEEECCTTTCC--CCCSEEEEESCGG
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHh-------CcccCceEEEecCcccCC--CCCcEEEEEeecc
Confidence            578999999999999999988  678999998 444433       344468999999998753  3679998854444

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.53  E-value=0.00034  Score=50.81  Aligned_cols=68  Identities=26%  Similarity=0.337  Sum_probs=51.9

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  141 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~  141 (189)
                      ..+|+|+|||+|.++..++++  ..+++.+|+ |+.++       ..+..++++++.+|.++..+  ..|++++.-..+.
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~~~p--~~D~~~l~~vLh~  151 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFASVP--QGDAMILKAVCHN  151 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTTCCC--CEEEEEEESSGGG
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCCCCeEEecCCcccccc--cceEEEEehhhhh
Confidence            679999999999999999988  668899998 44443       23334689999999987544  5599888544443

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.36  E-value=6.6e-05  Score=54.26  Aligned_cols=77  Identities=18%  Similarity=0.283  Sum_probs=54.0

Q ss_pred             HHHHHhCCCCCEEEEecCCCChHHHHHHHh------CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---
Q psy13204         55 QHIASRCKASDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---  125 (189)
Q Consensus        55 ~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---  125 (189)
                      +.+...++ +++||++|++.|+.++.++..      .++++++|+++.......     ... .+++++++|+.+..   
T Consensus        73 ~eli~~~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~-~~I~~i~gDs~~~~~~~  145 (232)
T d2bm8a1          73 HDMLWELR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDM-ENITLHQGDCSDLTTFE  145 (232)
T ss_dssp             HHHHHHHC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGC-TTEEEEECCSSCSGGGG
T ss_pred             HHHHHHhC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----ccc-cceeeeecccccHHHHH
Confidence            44555556 789999999999988877642      468999999875433221     111 58999999976542   


Q ss_pred             --CCCCccEEEECCC
Q psy13204        126 --PSLQGDVVFLSPP  138 (189)
Q Consensus       126 --~~~~~D~v~~npp  138 (189)
                        ....+|.|+.|--
T Consensus       146 ~l~~~~~dlIfID~~  160 (232)
T d2bm8a1         146 HLREMAHPLIFIDNA  160 (232)
T ss_dssp             GGSSSCSSEEEEESS
T ss_pred             HHHhcCCCEEEEcCC
Confidence              3446889998743

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.29  E-value=0.0026  Score=44.21  Aligned_cols=40  Identities=28%  Similarity=0.256  Sum_probs=30.0

Q ss_pred             CCEEEEecCCCChH----HHHHHHh----C--CeEEEEeCCHHHHHHHHH
Q psy13204         64 SDVVIDGFCGCGGN----TIQFAAV----C--QKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        64 ~~~vlD~g~G~G~~----~~~~~~~----~--~~v~~vD~~~~~~~~a~~  103 (189)
                      .-+|+++|||+|.=    ++.+...    +  .+++|.|+++.+++.|+.
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            55999999999983    3333322    1  269999999999999874

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.74  E-value=0.0015  Score=47.15  Aligned_cols=62  Identities=21%  Similarity=0.297  Sum_probs=46.6

Q ss_pred             CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  135 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~  135 (189)
                      ..+|+|+|||+|.++..++++  ..+++.+|+.+ .++       ......++.++.+|..+..|  ..|++++
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~-------~~~~~~r~~~~~~d~~~~~P--~ad~~~l  145 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIE-------DAPSYPGVEHVGGDMFVSIP--KADAVFM  145 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTT-------TCCCCTTEEEEECCTTTCCC--CCSCEEC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhh-------hcccCCceEEecccccccCC--CcceEEE
Confidence            568999999999999999998  67899999854 332       22333589999999877544  3455555

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.68  E-value=0.00031  Score=50.79  Aligned_cols=75  Identities=17%  Similarity=0.213  Sum_probs=44.9

Q ss_pred             CCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECC
Q psy13204         61 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  137 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~np  137 (189)
                      ++++..|+|+|||.|+++..++..  ...+.|+++--...+. -......+- +-+++...+.....+....|+|+||.
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~l~~~~~D~vlcDm  140 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFFIPPERCDTLLCDI  140 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHhcCCCcCCEEEeeC
Confidence            455778999999999999999876  3467777763110000 000000111 12455555444444667899999995

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.028  Score=40.43  Aligned_cols=82  Identities=9%  Similarity=-0.008  Sum_probs=59.9

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      ++++|=.|+++|.   .+..+++.|++|+..+.+++.++.+.+.+...+...++..+.+|+.+..           .-..
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g~   89 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG   89 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            7777777766554   3334455699999999999999988888877766457888899987642           1236


Q ss_pred             ccEEEECCCCCCCccc
Q psy13204        130 GDVVFLSPPWGGPEYA  145 (189)
Q Consensus       130 ~D~v~~npp~~~~~~~  145 (189)
                      .|+++.|.........
T Consensus        90 iD~lVnnAg~~~~~~~  105 (257)
T d1xg5a_          90 VDICINNAGLARPDTL  105 (257)
T ss_dssp             CSEEEECCCCCCCCCT
T ss_pred             CCEEEecccccCCCcc
Confidence            8999999877654433

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.70  E-value=0.016  Score=37.23  Aligned_cols=57  Identities=21%  Similarity=0.255  Sum_probs=41.8

Q ss_pred             CCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         72 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        72 ~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      ||.|.++..+++.    |..|+.+|.+++.++.+...   .    ...++.+|..+..     .-...|.++.
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---h----hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            5668887777653    88999999999988876543   1    4578999987653     2346787776

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.079  Score=37.70  Aligned_cols=80  Identities=15%  Similarity=0.080  Sum_probs=59.3

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      |+++|=.|++.|-   ++..++++|++|+..+.+++.++...+.+...+.  ++..+.+|..+..           ....
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            6777766666654   4555566799999999999999888888876654  7888999988753           2346


Q ss_pred             ccEEEECCCCCCCccc
Q psy13204        130 GDVVFLSPPWGGPEYA  145 (189)
Q Consensus       130 ~D~v~~npp~~~~~~~  145 (189)
                      .|+++.|.-.......
T Consensus        85 idilinnag~~~~~~~  100 (244)
T d1yb1a_          85 VSILVNNAGVVYTSDL  100 (244)
T ss_dssp             CSEEEECCCCCCCCCC
T ss_pred             CceeEeeccccccccc
Confidence            8999998776654433

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=95.14  E-value=0.036  Score=42.53  Aligned_cols=49  Identities=20%  Similarity=0.209  Sum_probs=41.8

Q ss_pred             CCCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCC
Q psy13204         62 KASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGV  110 (189)
Q Consensus        62 ~~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~  110 (189)
                      .++.+++|+||-.|..+..+++.    ..+|+++|.++...+..++|+..+..
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            34789999999999998877654    35899999999999999999987754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.01  E-value=0.018  Score=38.55  Aligned_cols=44  Identities=16%  Similarity=0.017  Sum_probs=34.7

Q ss_pred             hCCCCCEEEEecCC-CChHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q psy13204         60 RCKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        60 ~~~~~~~vlD~g~G-~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~  103 (189)
                      .++++++|+-+|+| .|.++..+++. |++|+++|.+++.++.+++
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK   69 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc
Confidence            45669999999987 55666666655 9999999999998887654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.96  E-value=0.17  Score=36.13  Aligned_cols=78  Identities=8%  Similarity=-0.069  Sum_probs=56.0

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------------CCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------------~~~  128 (189)
                      ++++|=.|+..|.   .+..+++.|++|+.++.+++.++.+.+.+...+.  ++.++.+|+.+..            ...
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            6777766665442   3444455699999999999998888888877765  7788889987643            123


Q ss_pred             CccEEEECCCCCCCc
Q psy13204        129 QGDVVFLSPPWGGPE  143 (189)
Q Consensus       129 ~~D~v~~npp~~~~~  143 (189)
                      ..|+++.|.......
T Consensus        84 ~idilinnag~~~~~   98 (258)
T d1ae1a_          84 KLNILVNNAGVVIHK   98 (258)
T ss_dssp             CCCEEEECCCCCCCC
T ss_pred             CcEEEeccccccccC
Confidence            688988887666543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.85  E-value=0.071  Score=38.22  Aligned_cols=75  Identities=15%  Similarity=0.118  Sum_probs=54.2

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      ++++|=.|+++|.   .+..+++.|++|+.+|.+++.++.+.+.+...+.  ++..+.+|+.+..           .-..
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            7777766655443   3344455699999999999999988888776664  7888899987642           1237


Q ss_pred             ccEEEECCCCC
Q psy13204        130 GDVVFLSPPWG  140 (189)
Q Consensus       130 ~D~v~~npp~~  140 (189)
                      .|+++.|.-..
T Consensus        83 iDilVnnaG~~   93 (260)
T d1zema1          83 IDFLFNNAGYQ   93 (260)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCeehhhhccc
Confidence            89999886544

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.80  E-value=0.055  Score=35.95  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=33.5

Q ss_pred             CCCCCEEEEecCC-CChHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        61 ~~~~~~vlD~g~G-~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~  103 (189)
                      ++++++|+=+||| .|.+++.+++. |++|+++|.+++.++.|++
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH
Confidence            4568899888887 45556656555 8899999999999888765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.72  E-value=0.051  Score=37.34  Aligned_cols=45  Identities=24%  Similarity=0.196  Sum_probs=34.8

Q ss_pred             hCCCCCEEEEecCCC-ChHHHHHHHh-C-CeEEEEeCCHHHHHHHHHH
Q psy13204         60 RCKASDVVIDGFCGC-GGNTIQFAAV-C-QKVISIDIDPAKLRLAQHN  104 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~-G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~  104 (189)
                      .++++++|+-+|||. |..+..+++. + .+|+++|.+++.++.|++.
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            466799999999987 5466666654 4 4799999999998887543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.54  E-value=0.12  Score=36.78  Aligned_cols=75  Identities=16%  Similarity=0.066  Sum_probs=53.4

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.| |+++++.++    ++.|++|+..+.+++.++.+.+.+...+.  ++..+.+|+.+..           .-.
T Consensus         2 gKValITG-as~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTG-ATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            34444445 445555544    44599999999999999888888877665  7888999987643           224


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        79 ~iDilVnnAG~~~   91 (257)
T d2rhca1          79 PVDVLVNNAGRPG   91 (257)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             CCCEEEecccccC
Confidence            7899999865543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.27  E-value=0.28  Score=34.90  Aligned_cols=76  Identities=9%  Similarity=-0.069  Sum_probs=54.7

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------C-C
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------P-S  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~-~  127 (189)
                      |+++|=.|++ ++++.++    ++.|++|+..|.+++.++.+.+.+...+.  ++.++.+|+.+..           . .
T Consensus         8 GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d2ae2a_           8 GCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANHFH   84 (259)
T ss_dssp             TCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            7777755655 5554444    45599999999999999888888776664  7788889987632           1 2


Q ss_pred             CCccEEEECCCCCCC
Q psy13204        128 LQGDVVFLSPPWGGP  142 (189)
Q Consensus       128 ~~~D~v~~npp~~~~  142 (189)
                      ...|+++.|.-....
T Consensus        85 ~~idilvnnAG~~~~   99 (259)
T d2ae2a_          85 GKLNILVNNAGIVIY   99 (259)
T ss_dssp             TCCCEEEECCCCCCC
T ss_pred             CCceEEEECCceecc
Confidence            368999998765543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.24  E-value=0.19  Score=35.62  Aligned_cols=77  Identities=13%  Similarity=0.053  Sum_probs=55.9

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|+ +++++.++++    .|++|+.++.+++.++.+.+.+...+.  ++..+.+|+.+..           .-.
T Consensus        10 nKvalITGa-s~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1          10 NKVALVTGA-GRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             SCEEEEEST-TSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            556665554 4556555554    489999999999999888888776664  7888999987642           224


Q ss_pred             CccEEEECCCCCCCc
Q psy13204        129 QGDVVFLSPPWGGPE  143 (189)
Q Consensus       129 ~~D~v~~npp~~~~~  143 (189)
                      ..|+++.|.......
T Consensus        87 ~iDilvnnag~~~~~  101 (251)
T d2c07a1          87 NVDILVNNAGITRDN  101 (251)
T ss_dssp             CCCEEEECCCCCCCC
T ss_pred             Cceeeeecccccccc
Confidence            799999998765543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.14  E-value=0.13  Score=36.85  Aligned_cols=75  Identities=17%  Similarity=0.084  Sum_probs=53.6

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      ++++|=.|++.|.   .+..+++.|++|+..|.+++.++.+.......+...++..+.+|+.+..           .-..
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   83 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGR   83 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            6667666666553   4455566699999999999998888777665544347888899987643           1236


Q ss_pred             ccEEEECCC
Q psy13204        130 GDVVFLSPP  138 (189)
Q Consensus       130 ~D~v~~npp  138 (189)
                      .|+++.|.-
T Consensus        84 iDiLVnnAG   92 (258)
T d1iy8a_          84 IDGFFNNAG   92 (258)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCc
Confidence            899998854

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.07  E-value=0.04  Score=35.16  Aligned_cols=56  Identities=14%  Similarity=0.135  Sum_probs=39.1

Q ss_pred             CCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204         72 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  135 (189)
Q Consensus        72 ~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  135 (189)
                      ||.|.++..+++.    |.+|+.+|.+++.++.++.    .    ...++.+|..+..     .-...|.+++
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~----~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----Y----ATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----T----CSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----h----CCcceeeecccchhhhccCCccccEEEE
Confidence            4667777777654    8999999999999887632    1    3467778877654     1235777776

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.18  Score=35.98  Aligned_cols=76  Identities=16%  Similarity=0.087  Sum_probs=55.4

Q ss_pred             CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      |+++|=.| |+++++.+.++    .|++|+..+.+++.++.+.+.+...+.  ++..+.+|+.+..           .-.
T Consensus        11 gK~alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~~g   87 (255)
T d1fmca_          11 GKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             TCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            67777444 55565555544    499999999999999888888877664  7888899987642           123


Q ss_pred             CccEEEECCCCCCC
Q psy13204        129 QGDVVFLSPPWGGP  142 (189)
Q Consensus       129 ~~D~v~~npp~~~~  142 (189)
                      ..|+++.|.-....
T Consensus        88 ~iDilvnnAG~~~~  101 (255)
T d1fmca_          88 KVDILVNNAGGGGP  101 (255)
T ss_dssp             SCCEEEECCCCCCC
T ss_pred             CCCEeeeCCcCCCC
Confidence            78999998765543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.13  Score=37.01  Aligned_cols=74  Identities=18%  Similarity=0.033  Sum_probs=55.2

Q ss_pred             CCEEEEecCCCChHHHHHH----Hh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQFA----AV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~----~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      |++|.=+..|+++++.+++    +. |++|+..+.+++..+.+.+.++..+.  ++.++.+|..+..           ..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            5667656666677666554    34 78999999999999988888877765  7888999987743           12


Q ss_pred             CCccEEEECCCC
Q psy13204        128 LQGDVVFLSPPW  139 (189)
Q Consensus       128 ~~~D~v~~npp~  139 (189)
                      ...|++|.|.=.
T Consensus        80 g~iDiLVnNAGi   91 (275)
T d1wmaa1          80 GGLDVLVNNAGI   91 (275)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCcEEEEEcCCc
Confidence            479999998644

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.70  E-value=0.062  Score=36.21  Aligned_cols=42  Identities=29%  Similarity=0.267  Sum_probs=32.6

Q ss_pred             CCCCEEEEecCC-CChHHHHHHHh-CC-eEEEEeCCHHHHHHHHH
Q psy13204         62 KASDVVIDGFCG-CGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH  103 (189)
Q Consensus        62 ~~~~~vlD~g~G-~G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~  103 (189)
                      ++|++|+=+|+| .|.+++.+++. |+ +|+++|.+++.++.+++
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence            458999999887 35566666665 76 79999999999988754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.64  E-value=0.21  Score=35.51  Aligned_cols=71  Identities=11%  Similarity=-0.086  Sum_probs=51.3

Q ss_pred             EEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCccE
Q psy13204         68 IDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGDV  132 (189)
Q Consensus        68 lD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D~  132 (189)
                      |=.| |+++++.+.    ++.|++|+..+.+++.++.+.+.+...+.  ++..+.+|+.+..           .-...|+
T Consensus         5 lITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           5 LVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             EEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEcC-CccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            4344 445555544    44599999999999999888888877764  7888899987643           2247999


Q ss_pred             EEECCCCCC
Q psy13204        133 VFLSPPWGG  141 (189)
Q Consensus       133 v~~npp~~~  141 (189)
                      ++.|.-...
T Consensus        82 lVnnAG~~~   90 (255)
T d1gega_          82 IVNNAGVAP   90 (255)
T ss_dssp             EEECCCCCC
T ss_pred             EEecccccc
Confidence            998865543

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=93.41  E-value=0.014  Score=42.49  Aligned_cols=73  Identities=12%  Similarity=0.212  Sum_probs=58.2

Q ss_pred             EEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEECCCCCCC
Q psy13204         68 IDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus        68 lD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~~  142 (189)
                      +...+|+-.++..+.+..-+...+|+.|+-.+..++++..   ..++.+...|..+..     +...--+|++||||...
T Consensus        87 l~~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~---~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~k  163 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERK  163 (271)
T ss_dssp             CCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCST
T ss_pred             cCcCCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhcc---CCCceEEcCchHHHHHhhCCCCCCceEEEecCCcCCH
Confidence            4789999999988888888999999999988887766432   247899999987643     44556799999999875


Q ss_pred             c
Q psy13204        143 E  143 (189)
Q Consensus       143 ~  143 (189)
                      +
T Consensus       164 ~  164 (271)
T d2oo3a1         164 E  164 (271)
T ss_dssp             T
T ss_pred             H
Confidence            4

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.37  E-value=0.3  Score=35.23  Aligned_cols=77  Identities=14%  Similarity=0.053  Sum_probs=53.1

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      |+++|=.|++.| ++.++    ++.|++|+..+.+++.++.+.+.+.. .+  .++.++.+|..+..           ..
T Consensus        25 gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          25 GKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhhhhc
Confidence            677777776554 44444    45599999999999888776665543 34  37788888887643           23


Q ss_pred             CCccEEEECCCCCCCc
Q psy13204        128 LQGDVVFLSPPWGGPE  143 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~  143 (189)
                      ...|+++.|.-.....
T Consensus       102 g~iDilvnnAg~~~~~  117 (294)
T d1w6ua_         102 GHPNIVINNAAGNFIS  117 (294)
T ss_dssp             CSCSEEEECCCCCCCS
T ss_pred             cccchhhhhhhhcccc
Confidence            4789999887655433

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.28  Score=34.56  Aligned_cols=74  Identities=14%  Similarity=0.026  Sum_probs=50.7

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------CCCCccEE
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDVV  133 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~v  133 (189)
                      |+++|=.|++.|-   .+..+++.|++|+.+|.+++.++.+.+..      ..+..++.|+.+..       .-.+.|++
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iDil   80 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVDLL   80 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence            7788877766553   44444556999999999998776654432      25677888876642       33479999


Q ss_pred             EECCCCCCCc
Q psy13204        134 FLSPPWGGPE  143 (189)
Q Consensus       134 ~~npp~~~~~  143 (189)
                      +.|.......
T Consensus        81 VnnAg~~~~~   90 (244)
T d1pr9a_          81 VNNAAVALLQ   90 (244)
T ss_dssp             EECCCCCCCB
T ss_pred             Eecccccccc
Confidence            9987665433

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.22  E-value=0.22  Score=35.54  Aligned_cols=74  Identities=18%  Similarity=0.067  Sum_probs=52.7

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.|++ ++++.+.    ++.|++|+..+.+++.++.+.+.+...+.. .++.++.+|+.+..           .-
T Consensus         5 gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           5 EKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            6666655555 4444444    455999999999999998888888776543 35889999987643           12


Q ss_pred             CCccEEEECCC
Q psy13204        128 LQGDVVFLSPP  138 (189)
Q Consensus       128 ~~~D~v~~npp  138 (189)
                      ...|+++.|.=
T Consensus        84 g~iDilvnnAG   94 (264)
T d1spxa_          84 GKLDILVNNAG   94 (264)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEeecccc
Confidence            36899998853

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.21  E-value=0.2  Score=36.04  Aligned_cols=75  Identities=17%  Similarity=0.106  Sum_probs=54.0

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-----------~~~  128 (189)
                      |++++=.|++.|-   .+..+++.|++|+..|.+++.++.+.+.+...+.. .++..+.+|+.+..           .-.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   83 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFG   83 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            6677766655543   33444556999999999999999888888777653 36889999987643           123


Q ss_pred             CccEEEECCC
Q psy13204        129 QGDVVFLSPP  138 (189)
Q Consensus       129 ~~D~v~~npp  138 (189)
                      ..|+++.|.-
T Consensus        84 ~iDilVnnAG   93 (274)
T d1xhla_          84 KIDILVNNAG   93 (274)
T ss_dssp             CCCEEEECCC
T ss_pred             CceEEEeecc
Confidence            6899999854

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.13  E-value=0.2  Score=36.00  Aligned_cols=76  Identities=18%  Similarity=0.074  Sum_probs=53.9

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|++.|.   .+..+++.|++|+.++.+++.++.+.+.+...+.. .++..+.+|+.+..           .-.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   84 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFG   84 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            6667666655442   34444556999999999999999888888766542 35888999987643           123


Q ss_pred             CccEEEECCCC
Q psy13204        129 QGDVVFLSPPW  139 (189)
Q Consensus       129 ~~D~v~~npp~  139 (189)
                      ..|+++.|.-.
T Consensus        85 ~iDilvnnAG~   95 (272)
T d1xkqa_          85 KIDVLVNNAGA   95 (272)
T ss_dssp             CCCEEEECCCC
T ss_pred             CceEEEeCCcc
Confidence            68999988543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=92.92  E-value=0.014  Score=41.58  Aligned_cols=27  Identities=15%  Similarity=0.311  Sum_probs=22.9

Q ss_pred             EEEeCCcccCC---CCCCccEEEECCCCCC
Q psy13204        115 QFIQGDFFALA---PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       115 ~~~~~d~~~~~---~~~~~D~v~~npp~~~  141 (189)
                      ++.++|.++.+   +++++|+|+.||||..
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~   35 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNL   35 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSS
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCC
Confidence            57899988754   7789999999999974

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.16  Score=36.14  Aligned_cols=77  Identities=16%  Similarity=-0.011  Sum_probs=52.5

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      |+++|=.|++ ++++.++    ++.|++|+.++.+++.++.+...+....-..++..+.+|+.+..           .-.
T Consensus         3 GKvalITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           3 GKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            5666666655 4445444    44599999999999988877766644322237888899987743           123


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        82 ~iDilVnnAg~~~   94 (254)
T d2gdza1          82 RLDILVNNAGVNN   94 (254)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CcCeecccccccc
Confidence            7899999876544

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.84  E-value=0.16  Score=36.41  Aligned_cols=74  Identities=19%  Similarity=0.051  Sum_probs=50.5

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      ++++|=.|+++|.   .+..+++.|++|+.+|.+++.++.+.+.+...   ..+.++.+|+.+..           ....
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            7777777766553   23334455999999999998887766655322   36778888987642           1237


Q ss_pred             ccEEEECCCCC
Q psy13204        130 GDVVFLSPPWG  140 (189)
Q Consensus       130 ~D~v~~npp~~  140 (189)
                      .|+++.|.-..
T Consensus        83 iD~lVnnAG~~   93 (268)
T d2bgka1          83 LDIMFGNVGVL   93 (268)
T ss_dssp             CCEEEECCCCC
T ss_pred             cceeccccccc
Confidence            89999887543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.45  E-value=0.019  Score=41.40  Aligned_cols=28  Identities=14%  Similarity=0.230  Sum_probs=23.1

Q ss_pred             eEEEeCCcccCC---CCCCccEEEECCCCCC
Q psy13204        114 IQFIQGDFFALA---PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       114 ~~~~~~d~~~~~---~~~~~D~v~~npp~~~  141 (189)
                      -.++++|.++.+   +++++|+|+.||||..
T Consensus         5 ~~~~~~D~le~l~~l~d~SIDliitDPPYn~   35 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNI   35 (279)
T ss_dssp             EEEEECCHHHHHHTSCTTCEEEEEECCCSBC
T ss_pred             ceEEechHHHHHhhCcCCCccEEEECCCCCC
Confidence            457788988764   7789999999999974

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.29  E-value=0.28  Score=32.17  Aligned_cols=52  Identities=13%  Similarity=0.155  Sum_probs=30.9

Q ss_pred             HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204         77 NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  138 (189)
Q Consensus        77 ~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp  138 (189)
                      ++..+.+.|.+|+++|.+++..+.+++    .+.   +.....+.. .  -...|+|+..-|
T Consensus        15 lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~---~~~~~~~~~-~--~~~~DiIilavp   66 (165)
T d2f1ka2          15 LAGDLRRRGHYLIGVSRQQSTCEKAVE----RQL---VDEAGQDLS-L--LQTAKIIFLCTP   66 (165)
T ss_dssp             HHHHHHHTTCEEEEECSCHHHHHHHHH----TTS---CSEEESCGG-G--GTTCSEEEECSC
T ss_pred             HHHHHHHCCCEEEEEECCchHHHHHHH----hhc---cceeeeecc-c--ccccccccccCc
Confidence            444555569999999999988777643    332   111222221 1  135688887655

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=92.24  E-value=0.027  Score=41.20  Aligned_cols=29  Identities=28%  Similarity=0.376  Sum_probs=24.4

Q ss_pred             ceEEEeCCcccCC---CCCCccEEEECCCCCC
Q psy13204        113 KIQFIQGDFFALA---PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       113 ~~~~~~~d~~~~~---~~~~~D~v~~npp~~~  141 (189)
                      .-.++++|.++.+   +++++|+|+.||||..
T Consensus        12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~   43 (320)
T d1booa_          12 NGSMYIGDSLELLESFPEESISLVMTSPPFAL   43 (320)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSS
T ss_pred             CCEEEehhHHHHHhhCccCCCCEEEECCCCcC
Confidence            3488999988765   7789999999999974

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.96  E-value=0.41  Score=32.25  Aligned_cols=73  Identities=11%  Similarity=-0.051  Sum_probs=46.4

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEEC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLS  136 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~n  136 (189)
                      +++++=.|++.|.   .+..+++.|++|+.++.+++..+.+.+.+....   ++.+...|..+..    .-...|+++.|
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~iDilin~   99 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAVKGAHFVFTA   99 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHhcCcCeeeec
Confidence            7788776655443   333445569999999999999888777765442   2333444433321    12468999988


Q ss_pred             CCC
Q psy13204        137 PPW  139 (189)
Q Consensus       137 pp~  139 (189)
                      .+.
T Consensus       100 Ag~  102 (191)
T d1luaa1         100 GAI  102 (191)
T ss_dssp             CCT
T ss_pred             Ccc
Confidence            654

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.87  E-value=0.37  Score=33.99  Aligned_cols=75  Identities=13%  Similarity=-0.040  Sum_probs=51.5

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      +++++=.|++.|.   .+..+++.|++|+..|.+++.++.+.+...     .++.++.+|+.+..           ....
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   80 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTAFGG   80 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            6777766766553   344455569999999999987766655432     46788889987643           1236


Q ss_pred             ccEEEECCCCCCCc
Q psy13204        130 GDVVFLSPPWGGPE  143 (189)
Q Consensus       130 ~D~v~~npp~~~~~  143 (189)
                      .|+++.|.-.....
T Consensus        81 idilinnAG~~~~~   94 (244)
T d1nffa_          81 LHVLVNNAGILNIG   94 (244)
T ss_dssp             CCEEEECCCCCCCB
T ss_pred             CeEEEECCcccCCC
Confidence            89999997665433

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.86  E-value=0.34  Score=31.72  Aligned_cols=44  Identities=34%  Similarity=0.397  Sum_probs=32.1

Q ss_pred             hCCCCCEEEEecCCC-ChHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q psy13204         60 RCKASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~-G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~  103 (189)
                      .++++++|+=+|+|. |..+..+++. |.+|+++|.+++.++.+++
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc
Confidence            356688887788763 4455555554 8899999999998887653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.70  E-value=0.15  Score=34.16  Aligned_cols=44  Identities=18%  Similarity=0.139  Sum_probs=33.5

Q ss_pred             hCCCCCEEEEecCCC-ChHHHHHHHh-CC-eEEEEeCCHHHHHHHHH
Q psy13204         60 RCKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH  103 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~-G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~  103 (189)
                      .++++++|+=+|||. |.+++.+++. |+ +|+++|.+++-++.+++
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            345578887788875 6677777776 65 79999999988888753

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.69  E-value=0.36  Score=34.18  Aligned_cols=76  Identities=14%  Similarity=0.007  Sum_probs=51.8

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHH-HHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNA-SVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|++.|.   .+..+++.|++|+..+.+++.++.+.+.+ ...+.  ++..+.+|+.+..           .-.
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV--ETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            6677766665543   34444556999999999998887666554 34454  7788889987642           123


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        83 ~iDiLVnnAG~~~   95 (251)
T d1vl8a_          83 KLDTVVNAAGINR   95 (251)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999865443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.68  E-value=0.28  Score=29.40  Aligned_cols=66  Identities=14%  Similarity=0.038  Sum_probs=36.6

Q ss_pred             CCEEEEec---CCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204         64 SDVVIDGF---CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  138 (189)
Q Consensus        64 ~~~vlD~g---~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp  138 (189)
                      .+++.=+|   +|.+.++..+.++|.+|+|.|.......   +.+...|+    .+..+...+..  ...|+|+..|.
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~---~~L~~~Gi----~v~~g~~~~~i--~~~d~vV~S~A   76 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVT---QRLAQAGA----KIYIGHAEEHI--EGASVVVVSSA   76 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHH---HHHHHTTC----EEEESCCGGGG--TTCSEEEECTT
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhh---hHHHHCCC----eEEECCccccC--CCCCEEEECCC
Confidence            34444443   3344456667778999999998642221   22333444    45555444432  34688887544

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.65  E-value=0.13  Score=34.42  Aligned_cols=68  Identities=12%  Similarity=0.115  Sum_probs=46.4

Q ss_pred             CCEEEEecCCCC-hHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEEC
Q psy13204         64 SDVVIDGFCGCG-GNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  136 (189)
Q Consensus        64 ~~~vlD~g~G~G-~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n  136 (189)
                      +.+|+=+|+|.- ..++..+.. |++|+.+|.+++.++..+....     .+++....+..... .-...|+|+.-
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhhccCcEEEEe
Confidence            678999999954 455555554 9999999999999988766543     24555555443322 12357998885

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=91.59  E-value=0.37  Score=34.07  Aligned_cols=76  Identities=16%  Similarity=-0.003  Sum_probs=52.2

Q ss_pred             CCEEEEecCCCChHHHH----HHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQ----FAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~----~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|++ ++++.+    +++.|++|+.++.+++.++.+.+.+..   ..++.++.+|+.+..           .-.
T Consensus         6 gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           6 GKVAIITGGT-LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            6667666654 444444    455599999999999888777665532   247888999987643           123


Q ss_pred             CccEEEECCCCCCCc
Q psy13204        129 QGDVVFLSPPWGGPE  143 (189)
Q Consensus       129 ~~D~v~~npp~~~~~  143 (189)
                      ..|+++.|.-.....
T Consensus        82 ~iDiLVnnAg~~~~~   96 (251)
T d1zk4a1          82 PVSTLVNNAGIAVNK   96 (251)
T ss_dssp             SCCEEEECCCCCCCC
T ss_pred             CceEEEecccccccc
Confidence            789999987665433

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.48  E-value=0.47  Score=33.57  Aligned_cols=77  Identities=12%  Similarity=-0.088  Sum_probs=54.7

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEE-EeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVIS-IDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~-vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      |+++|=.| |+++++.+.    ++.|++|+. ...+++..+.+.+.+...+.  ++..+.+|..+..           ..
T Consensus         6 GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           6 GKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHHHc
Confidence            77888555 556555554    455999875 56788888888888887775  7888999987632           22


Q ss_pred             CCccEEEECCCCCCCc
Q psy13204        128 LQGDVVFLSPPWGGPE  143 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~  143 (189)
                      ...|+++.|.-.....
T Consensus        83 g~idilinnag~~~~~   98 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWC   98 (259)
T ss_dssp             SCEEEEECCCCCCCCC
T ss_pred             CCCcEEEecccccccc
Confidence            3689999988765433

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.33  Score=31.37  Aligned_cols=61  Identities=16%  Similarity=0.036  Sum_probs=40.3

Q ss_pred             CCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEEC
Q psy13204         72 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLS  136 (189)
Q Consensus        72 ~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~n  136 (189)
                      ||.|..+..+++.    +..++.+|.+++......+....    ..+.++.+|..+..     .-...|.+++-
T Consensus         9 ~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~   78 (153)
T d1id1a_           9 CGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             ECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence            5566776666553    88999999998765443333332    25789999987753     33467887774

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.33  E-value=0.6  Score=33.11  Aligned_cols=77  Identities=10%  Similarity=-0.109  Sum_probs=54.1

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------C-CC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------P-SL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~-~~  128 (189)
                      ++++|=.|+++|.   .+..+++.|++|+.++.+++.++.+.+.+...+.  ++....+|+.+..           . ..
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            6777777765543   3444455699999999999999888877776654  7888889887532           1 24


Q ss_pred             CccEEEECCCCCCC
Q psy13204        129 QGDVVFLSPPWGGP  142 (189)
Q Consensus       129 ~~D~v~~npp~~~~  142 (189)
                      ..|+++.|......
T Consensus        86 ~idilvnnAG~~~~   99 (259)
T d1xq1a_          86 KLDILINNLGAIRS   99 (259)
T ss_dssp             CCSEEEEECCC---
T ss_pred             CcccccccccccCC
Confidence            68999998766543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.27  Score=34.84  Aligned_cols=71  Identities=20%  Similarity=0.057  Sum_probs=48.5

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      |+++|=.|++.|.   .+..+++.|++|+..|.+++.++.+.+..      .++.++.+|+.+..           .-..
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRRFGR   79 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            7777777765543   33444555999999999998877654432      26778888987643           1136


Q ss_pred             ccEEEECCCCC
Q psy13204        130 GDVVFLSPPWG  140 (189)
Q Consensus       130 ~D~v~~npp~~  140 (189)
                      .|+++.|.-..
T Consensus        80 iDilVnnAG~~   90 (250)
T d1ydea1          80 LDCVVNNAGHH   90 (250)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEeccccc
Confidence            89999987544

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.07  E-value=0.73  Score=32.28  Aligned_cols=72  Identities=11%  Similarity=-0.061  Sum_probs=48.7

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|++ ++++..+    ++.|++|+..+.+++.++...+...     .+...+..|..+..           .-.
T Consensus         4 gK~alITGas-~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           4 GKIALVTGAS-RGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             TCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcccC
Confidence            5666666655 4444444    4559999999999988877655542     35677888876632           224


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        78 ~iDilVnnAg~~~   90 (243)
T d1q7ba_          78 EVDILVNNAGITR   90 (243)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             Ccceehhhhhhcc
Confidence            7999999865544

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.79  E-value=0.56  Score=32.91  Aligned_cols=71  Identities=13%  Similarity=-0.051  Sum_probs=47.3

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------CCCCccE
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDV  132 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~  132 (189)
                      |+++|=.|++ ++++...    ++.|++|+.++.+++.++.+.+..      ..+..+..|..+..       .-...|+
T Consensus         5 GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~iDi   77 (242)
T d1cyda_           5 GLRALVTGAG-KGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVDL   77 (242)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence            6777756655 4444444    455999999999987766554332      25677888877643       2347899


Q ss_pred             EEECCCCCC
Q psy13204        133 VFLSPPWGG  141 (189)
Q Consensus       133 v~~npp~~~  141 (189)
                      ++.|.-...
T Consensus        78 lVnnAg~~~   86 (242)
T d1cyda_          78 LVNNAALVI   86 (242)
T ss_dssp             EEECCCCCC
T ss_pred             EEECCcccc
Confidence            999865443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.69  E-value=0.3  Score=34.62  Aligned_cols=72  Identities=17%  Similarity=0.040  Sum_probs=49.3

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|++ ++++.+.    ++.|++|+..|.+++.++.+.+.+   +  .+..++.+|..+..           .-.
T Consensus         6 gK~alITGas-~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   79 (253)
T d1hxha_           6 GKVALVTGGA-SGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRRLG   79 (253)
T ss_dssp             TCEEEETTTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            6777766655 4454444    455999999999998887665543   2  36777888877642           123


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        80 ~iDilVnnAG~~~   92 (253)
T d1hxha_          80 TLNVLVNNAGILL   92 (253)
T ss_dssp             SCCEEEECCCCCC
T ss_pred             CCCeEEecccccC
Confidence            7899999876544

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.66  E-value=0.84  Score=32.40  Aligned_cols=78  Identities=12%  Similarity=-0.030  Sum_probs=54.3

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCC-HHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDID-PAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      |+++|=.|++.|.   .+..+++.|++|+..+.+ ++.++.+.+.+...+.  ++.++.+|..+..           ...
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            7777777766553   444555669999998876 5666776666766665  7888889987632           123


Q ss_pred             CccEEEECCCCCCCc
Q psy13204        129 QGDVVFLSPPWGGPE  143 (189)
Q Consensus       129 ~~D~v~~npp~~~~~  143 (189)
                      ..|+++.|.......
T Consensus        96 ~idilV~nag~~~~~  110 (272)
T d1g0oa_          96 KLDIVCSNSGVVSFG  110 (272)
T ss_dssp             CCCEEEECCCCCCCC
T ss_pred             CCCccccccccchhh
Confidence            689999987765543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=90.45  E-value=0.58  Score=33.24  Aligned_cols=76  Identities=17%  Similarity=0.064  Sum_probs=51.1

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCC-HHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDID-PAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|++.|.   .+..+++.|++|+..+.+ ++..+.+.+.+...+.  ++..+.+|+.+..           ...
T Consensus         7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            6777655655443   334445559999999987 4566666666666664  7888899987643           123


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        85 ~iDiLVnnAG~~~   97 (261)
T d1geea_          85 KLDVMINNAGLEN   97 (261)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEeeccceecC
Confidence            6899999875543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.57  Score=30.76  Aligned_cols=44  Identities=20%  Similarity=0.189  Sum_probs=31.8

Q ss_pred             hCCCCCEEEEecCCCCh-HHHHHHHh-CC-eEEEEeCCHHHHHHHHH
Q psy13204         60 RCKASDVVIDGFCGCGG-NTIQFAAV-CQ-KVISIDIDPAKLRLAQH  103 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~-~~~~~~~~-~~-~v~~vD~~~~~~~~a~~  103 (189)
                      .++++++|+=+|+|..+ ++..+++. |+ +|+++|.+++.++.|++
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~   69 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE   69 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH
Confidence            34558889888887544 44444544 76 79999999998888754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.31  E-value=0.22  Score=31.30  Aligned_cols=58  Identities=16%  Similarity=0.206  Sum_probs=42.0

Q ss_pred             CCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEECC
Q psy13204         72 CGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSP  137 (189)
Q Consensus        72 ~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~np  137 (189)
                      ||.|..+..+++.  +..++.+|.+++..+.++    ..    .+.++.+|..+..     .-.+.+.+++..
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~----~~----~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL----RS----GANFVHGDPTRVSDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH----HT----TCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH----hc----CccccccccCCHHHHHHhhhhcCcEEEEec
Confidence            6788899999886  667889999998876543    22    5688999987643     234677777743

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.93  E-value=0.21  Score=33.47  Aligned_cols=44  Identities=20%  Similarity=0.165  Sum_probs=32.7

Q ss_pred             CCCCCEEEEecCCCCh-HHHHHHHh-C-CeEEEEeCCHHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGCGG-NTIQFAAV-C-QKVISIDIDPAKLRLAQHN  104 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~-~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~  104 (189)
                      ++++++|+=+|||..+ +++..++. | .+|+++|.+++.++.|++.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            5568999988887443 44444554 5 5899999999999987654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.80  E-value=1.2  Score=32.11  Aligned_cols=77  Identities=10%  Similarity=-0.080  Sum_probs=52.6

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhC---CCCceEEEeCCcccCC-----------
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYG---VSHKIQFIQGDFFALA-----------  125 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~-----------  125 (189)
                      |+++|=.|++. +++.++    ++.|++|+.++.+++.++.+.+.+....   ...++..+.+|+.+..           
T Consensus        12 gKvalITGas~-GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   90 (297)
T d1yxma1          12 GQVAIVTGGAT-GIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   90 (297)
T ss_dssp             TCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHH
Confidence            77777666554 455444    4459999999999998887776665431   1136888899987643           


Q ss_pred             CCCCccEEEECCCCCC
Q psy13204        126 PSLQGDVVFLSPPWGG  141 (189)
Q Consensus       126 ~~~~~D~v~~npp~~~  141 (189)
                      .....|+++.|.....
T Consensus        91 ~~G~iDiLVnnAg~~~  106 (297)
T d1yxma1          91 TFGKINFLVNNGGGQF  106 (297)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HhCCeEEEEeeccccc
Confidence            1236899999875443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.74  E-value=0.4  Score=34.01  Aligned_cols=76  Identities=17%  Similarity=0.021  Sum_probs=51.0

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHH-HHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNA-SVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.|+ +++++..+    ++.|++|+.++.+++.++.+.+.+ ...+.  ++..+.+|+.+..           .-
T Consensus         9 gK~alITGa-s~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           9 NKTIIVTGG-NRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGV--KTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             TEEEEEETT-TSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTC--CEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC--ceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            566666664 45555444    455999999999887665555444 34454  7888899987643           22


Q ss_pred             CCccEEEECCCCCCC
Q psy13204        128 LQGDVVFLSPPWGGP  142 (189)
Q Consensus       128 ~~~D~v~~npp~~~~  142 (189)
                      ...|+++.|......
T Consensus        86 g~iDilVnnAg~~~~  100 (260)
T d1h5qa_          86 GPISGLIANAGVSVV  100 (260)
T ss_dssp             CSEEEEEECCCCCCC
T ss_pred             CCCcEeccccccccc
Confidence            479999998766543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=89.61  E-value=0.4  Score=34.05  Aligned_cols=73  Identities=14%  Similarity=-0.027  Sum_probs=49.8

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      ++++|=.|++.|-   .+..+++.|++|+..|.+++.++...+.+   +  .++.++.+|+.+..           .-..
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---G--DAARYQHLDVTIEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---G--GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEcccCCHHHHHHHHHHHHHHcCC
Confidence            6777777766553   44455556999999999998766543332   2  47888999987643           1137


Q ss_pred             ccEEEECCCCCC
Q psy13204        130 GDVVFLSPPWGG  141 (189)
Q Consensus       130 ~D~v~~npp~~~  141 (189)
                      .|+++.|.-...
T Consensus        80 iDilVnnAg~~~   91 (254)
T d1hdca_          80 VDGLVNNAGIST   91 (254)
T ss_dssp             CCEEEECCCCCC
T ss_pred             ccEEEecCcccc
Confidence            899998875544

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.58  E-value=0.23  Score=33.18  Aligned_cols=43  Identities=23%  Similarity=0.272  Sum_probs=33.4

Q ss_pred             CCCCCEEEEecCCC-ChHHHHHHHh-CC-eEEEEeCCHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH  103 (189)
Q Consensus        61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~  103 (189)
                      ++++++|+=+|||. |.+++.+++. |+ .|+..|.+++.++.|++
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence            45588998899886 6677777776 65 68899999988777654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.15  E-value=0.65  Score=30.33  Aligned_cols=38  Identities=24%  Similarity=0.247  Sum_probs=24.9

Q ss_pred             EEEecCCC-Ch-HHHHHHHhC--CeEEEEeCCHHHHHHHHHH
Q psy13204         67 VIDGFCGC-GG-NTIQFAAVC--QKVISIDIDPAKLRLAQHN  104 (189)
Q Consensus        67 vlD~g~G~-G~-~~~~~~~~~--~~v~~vD~~~~~~~~a~~~  104 (189)
                      |.=+|||. |. ++..+.+.+  .+|+++|.+++.++.+++.
T Consensus         4 I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           4 VLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             EEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred             EEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence            44467663 22 344444445  4799999999999887654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=1.2  Score=31.54  Aligned_cols=77  Identities=14%  Similarity=0.078  Sum_probs=52.2

Q ss_pred             CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204         64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  129 (189)
Q Consensus        64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  129 (189)
                      |+++|=.|+++|.   ++..+++.|++|+.++.+++.++.+......... ..+.....|..+..           ....
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~g~   92 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKLMGG   92 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHHhCC
Confidence            7788777766654   3444455699999999999999888776554433 36777777765432           1236


Q ss_pred             ccEEEECCCCCC
Q psy13204        130 GDVVFLSPPWGG  141 (189)
Q Consensus       130 ~D~v~~npp~~~  141 (189)
                      .|+++.|.....
T Consensus        93 ~~~li~nag~~~  104 (269)
T d1xu9a_          93 LDMLILNHITNT  104 (269)
T ss_dssp             CSEEEECCCCCC
T ss_pred             cccccccccccc
Confidence            788888765443

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.95  E-value=0.65  Score=32.79  Aligned_cols=73  Identities=15%  Similarity=-0.007  Sum_probs=49.6

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      +++++=.|++ ++++.+.    ++.|++|+..|.+++.++.+.+.+   +  .++..+.+|+.+..           .-.
T Consensus         5 gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   78 (256)
T d1k2wa_           5 GKTALITGSA-RGIGRAFAEAYVREGARVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDRWG   78 (256)
T ss_dssp             TEEEEEETCS-SHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            5666666655 4544444    455999999999998776665443   3  37788889987643           123


Q ss_pred             CccEEEECCCCCCC
Q psy13204        129 QGDVVFLSPPWGGP  142 (189)
Q Consensus       129 ~~D~v~~npp~~~~  142 (189)
                      ..|+++.|.-....
T Consensus        79 ~iDilVnnAg~~~~   92 (256)
T d1k2wa_          79 SIDILVNNAALFDL   92 (256)
T ss_dssp             CCCEEEECCCCCCC
T ss_pred             CccEEEeecccccc
Confidence            78999999776543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=88.82  E-value=1.8  Score=30.11  Aligned_cols=75  Identities=13%  Similarity=0.011  Sum_probs=51.6

Q ss_pred             EEEEecCCCChHHHHH----HHhCCe-------EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---------
Q psy13204         66 VVIDGFCGCGGNTIQF----AAVCQK-------VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------  125 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~----~~~~~~-------v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------  125 (189)
                      .|+=+..|+++++.++    ++.|++       |+..+.+++.++.....+...+.  ++.++.+|..+..         
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA--LTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC--EEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHH
Confidence            3444444455555544    445776       88999999999888877776664  7888899987643         


Q ss_pred             --CCCCccEEEECCCCCCC
Q psy13204        126 --PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       126 --~~~~~D~v~~npp~~~~  142 (189)
                        .-...|+++.|.-....
T Consensus        80 ~~~~g~iDilvnnAg~~~~   98 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRF   98 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCC
T ss_pred             HHHcCCcceeecccccccC
Confidence              22478999988755543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.67  E-value=0.4  Score=31.66  Aligned_cols=42  Identities=19%  Similarity=0.159  Sum_probs=32.2

Q ss_pred             CCCCCEEEEecC--CCChHHHHHHHh-CCeEEEEeCCHHHHHHHH
Q psy13204         61 CKASDVVIDGFC--GCGGNTIQFAAV-CQKVISIDIDPAKLRLAQ  102 (189)
Q Consensus        61 ~~~~~~vlD~g~--G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~  102 (189)
                      ++++++|+=.|+  |.|..++.+++. |++|++++.+++..+.++
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~   70 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL   70 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEEeccccccccccccccccCccccccccccccccccc
Confidence            455889998886  456677777765 899999998987777664

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=88.03  E-value=0.37  Score=28.48  Aligned_cols=56  Identities=11%  Similarity=0.077  Sum_probs=32.1

Q ss_pred             CChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204         74 CGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  138 (189)
Q Consensus        74 ~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp  138 (189)
                      ...++..+.++|.+|+|-|..+...   .+.+...|+    .+..+...+..  ...|+|+..|-
T Consensus        14 Ms~LA~~L~~~G~~VsGSD~~~~~~---t~~L~~~Gi----~i~~gh~~~~i--~~~d~vV~SsA   69 (89)
T d1j6ua1          14 MSAVALHEFSNGNDVYGSNIEETER---TAYLRKLGI----PIFVPHSADNW--YDPDLVIKTPA   69 (89)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCHH---HHHHHHTTC----CEESSCCTTSC--CCCSEEEECTT
T ss_pred             HHHHHHHHHhCCCeEEEEeCCCChh---HHHHHHCCC----eEEeeeccccc--CCCCEEEEecC
Confidence            3345555667799999999886332   223566665    33333222221  34788887543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=87.93  E-value=1.2  Score=31.44  Aligned_cols=75  Identities=13%  Similarity=0.091  Sum_probs=49.7

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCC-HHHHHHHHHHHHH-hCCCCceEEEeCCcccCC-----------C
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDID-PAKLRLAQHNASV-YGVSHKIQFIQGDFFALA-----------P  126 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~-~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~-----------~  126 (189)
                      ++++|=.| |+++++.+.    ++.|++|+..+.+ ++.++.+.+.+.. .+.  ++.++.+|+.+..           .
T Consensus         4 gK~alITG-as~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           4 GKVAVVTG-STSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGV--KVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTS--CEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             cCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHH
Confidence            66777444 445555544    4559999999986 5666666655533 343  7888999987743           1


Q ss_pred             CCCccEEEECCCCCC
Q psy13204        127 SLQGDVVFLSPPWGG  141 (189)
Q Consensus       127 ~~~~D~v~~npp~~~  141 (189)
                      -...|+++.|.-...
T Consensus        81 ~G~iDiLVnnAG~~~   95 (260)
T d1x1ta1          81 MGRIDILVNNAGIQH   95 (260)
T ss_dssp             HSCCSEEEECCCCCC
T ss_pred             hCCCcEEEeeccccc
Confidence            136899999875544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.64  E-value=0.67  Score=32.48  Aligned_cols=69  Identities=19%  Similarity=0.027  Sum_probs=46.1

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|++.| ++.+.    ++.|++|+..+.+++.++.+.+.     +  +...+.+|+.+..           .-.
T Consensus         5 gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~-----~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   76 (242)
T d1ulsa_           5 DKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEA-----V--GAHPVVMDVADPASVERGFAEALAHLG   76 (242)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----T--TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-----c--CCeEEEEecCCHHHHHHHHHHHHHhcC
Confidence            666766666554 54444    45599999999999877665432     2  4567888877643           113


Q ss_pred             CccEEEECCCCC
Q psy13204        129 QGDVVFLSPPWG  140 (189)
Q Consensus       129 ~~D~v~~npp~~  140 (189)
                      ..|+++.|.-..
T Consensus        77 ~iDilVnnAG~~   88 (242)
T d1ulsa_          77 RLDGVVHYAGIT   88 (242)
T ss_dssp             SCCEEEECCCCC
T ss_pred             CceEEEECCccc
Confidence            689999886443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.49  E-value=1.3  Score=28.50  Aligned_cols=44  Identities=30%  Similarity=0.320  Sum_probs=31.7

Q ss_pred             hCCCCCEEEEecCCCCh-HHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q psy13204         60 RCKASDVVIDGFCGCGG-NTIQFAAV-CQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~-~~~~~~~~-~~~v~~vD~~~~~~~~a~~  103 (189)
                      ..+++++|+=.|+|.-+ ..+.+++. |++|++++.+++.++.+++
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence            45668888878877544 44444444 8899999999998887654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.96  E-value=0.77  Score=31.00  Aligned_cols=41  Identities=20%  Similarity=0.021  Sum_probs=29.5

Q ss_pred             EEEEecCCCC--hHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Q psy13204         66 VVIDGFCGCG--GNTIQFAAVCQKVISIDIDPAKLRLAQHNAS  106 (189)
Q Consensus        66 ~vlD~g~G~G--~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~  106 (189)
                      +|-=+|+|.=  +++..++++|.+|+.+|.+++.++.+++.+.
T Consensus         6 kvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~   48 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIE   48 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHH
Confidence            4556777632  2445556679999999999999888776553

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=86.95  E-value=0.89  Score=33.94  Aligned_cols=42  Identities=17%  Similarity=0.041  Sum_probs=31.3

Q ss_pred             CCEEEEecCCCChHHHHHHHh---------CCeEEEEeCCHHHHHHHHHHH
Q psy13204         64 SDVVIDGFCGCGGNTIQFAAV---------CQKVISIDIDPAKLRLAQHNA  105 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~~~~---------~~~v~~vD~~~~~~~~a~~~~  105 (189)
                      .-.|+|+|+|+|.++.-+.+.         ..+++-+|.|+...+.-++++
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l  130 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  130 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh
Confidence            347999999999998766543         235788999998766655544

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=86.03  E-value=0.79  Score=30.14  Aligned_cols=43  Identities=19%  Similarity=0.074  Sum_probs=32.9

Q ss_pred             CCCCCEEEEecCC--CChHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCG--CGGNTIQFAAV-CQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        61 ~~~~~~vlD~g~G--~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~  103 (189)
                      ++++++|+=.|+|  .|.+++.+++. |++|++++.+++-.+.+++
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~   71 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK   71 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh
Confidence            4558888766444  56677777776 9999999999998888654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=86.00  E-value=0.51  Score=31.30  Aligned_cols=43  Identities=14%  Similarity=0.050  Sum_probs=31.6

Q ss_pred             CCCCCEEEEecCCCCh-HHHHHHHh-C-CeEEEEeCCHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGCGG-NTIQFAAV-C-QKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~-~~~~~~~~-~-~~v~~vD~~~~~~~~a~~  103 (189)
                      ++++++|+=+|||..+ .++.+++. | .+|+++|.+++.++.+++
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            5669999988887444 44444544 5 479999999998888754

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.68  E-value=3.2  Score=28.87  Aligned_cols=59  Identities=12%  Similarity=-0.020  Sum_probs=41.3

Q ss_pred             EEEEecCCCChHHHHHHH-------hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204         66 VVIDGFCGCGGNTIQFAA-------VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  124 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~-------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  124 (189)
                      +|.=+..|+++++.++++       .|++|+.++.+++.++.+.+.+...+...++..+.+|+.+.
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~   72 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE   72 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence            344454455555555543       37899999999999988887776654434788899998763

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.63  E-value=4.1  Score=28.15  Aligned_cols=73  Identities=18%  Similarity=0.002  Sum_probs=50.5

Q ss_pred             EEEecCCCChHHHHHHH----hCCeEEEEe-CCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCc
Q psy13204         67 VIDGFCGCGGNTIQFAA----VCQKVISID-IDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQG  130 (189)
Q Consensus        67 vlD~g~G~G~~~~~~~~----~~~~v~~vD-~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~  130 (189)
                      |+=+..|+++++.+.++    .|++|+..+ .+++..+.+.+.+...+.  ++.++.+|..+..           .-...
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG--QAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTC--EEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            33445566666666654    489997765 477778887777776664  7888899987643           22478


Q ss_pred             cEEEECCCCCC
Q psy13204        131 DVVFLSPPWGG  141 (189)
Q Consensus       131 D~v~~npp~~~  141 (189)
                      |+++.|.-...
T Consensus        81 DiLVnnAg~~~   91 (244)
T d1edoa_          81 DVVVNNAGITR   91 (244)
T ss_dssp             SEEEECCCCCC
T ss_pred             Ccccccccccc
Confidence            99999875544

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=85.38  E-value=0.62  Score=31.27  Aligned_cols=40  Identities=18%  Similarity=0.062  Sum_probs=27.5

Q ss_pred             EEEecCCCCh--HHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Q psy13204         67 VIDGFCGCGG--NTIQFAAVCQKVISIDIDPAKLRLAQHNAS  106 (189)
Q Consensus        67 vlD~g~G~G~--~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~  106 (189)
                      |-=+|+|.=+  ++..+++.|.+|+.+|.++++++.+..++.
T Consensus         7 vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~   48 (186)
T d1wdka3           7 AAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAA   48 (186)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhh
Confidence            4446665322  344556679999999999999887766543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=85.16  E-value=2  Score=30.49  Aligned_cols=69  Identities=19%  Similarity=0.137  Sum_probs=46.5

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      |+++|=.|++ ++++.++    ++.|++|+.+|.+++.++...+..   +  .++..+.+|..+..           .-.
T Consensus         5 gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   78 (276)
T d1bdba_           5 GEAVLITGGA-SGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH---G--DNVLGIVGDVRSLEDQKQAASRCVARFG   78 (276)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeeEEecccccHHHHHHHHHHHHHHhC
Confidence            6667666654 4555554    445999999999998876654443   2  37888888887643           123


Q ss_pred             CccEEEECCC
Q psy13204        129 QGDVVFLSPP  138 (189)
Q Consensus       129 ~~D~v~~npp  138 (189)
                      ..|+++.|.=
T Consensus        79 ~idilvnnAG   88 (276)
T d1bdba_          79 KIDTLIPNAG   88 (276)
T ss_dssp             CCCEEECCCC
T ss_pred             Cccccccccc
Confidence            6899888753

>d1yf3a1 c.66.1.28 (A:1-259) DNA methylase T4DAM {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N6 adenine-specific DNA methylase, DAM
domain: DNA methylase T4DAM
species: Bacteriophage T4 [TaxId: 10665]

Probab=85.15  E-value=0.28  Score=34.62  Aligned_cols=45  Identities=18%  Similarity=0.296  Sum_probs=35.3

Q ss_pred             HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHH
Q psy13204         52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR   99 (189)
Q Consensus        52 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~   99 (189)
                      .++..+...+++..+.+|++||.|...+..   ..+++..|+++..+.
T Consensus        13 ~l~~~i~~~~p~~~~yvEPF~Gggav~~~~---~~~~v~ND~n~~lin   57 (259)
T d1yf3a1          13 SLLPELKSHFPKYNRFVDLFCGGLSVSLNV---NGPVLANDIQEPIIE   57 (259)
T ss_dssp             TTHHHHHHTCCCCSEEEETTCTTCTTGGGS---CSSEEEECSCHHHHH
T ss_pred             HHHHHHHHhCCCCCeEEeecccHHHHHhcc---CCCEEEecCCHHHHH
Confidence            356677777888889999999999987654   345889999997653

>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N6 adenine-specific DNA methylase, DAM
domain: DNA methylase DpnM
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=85.13  E-value=0.93  Score=32.09  Aligned_cols=45  Identities=13%  Similarity=0.210  Sum_probs=34.6

Q ss_pred             HHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHH
Q psy13204         52 KVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKL   98 (189)
Q Consensus        52 ~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~   98 (189)
                      .+...+...++. ..+.+|++||+|...+.+..  ..++.-|+++..+
T Consensus        14 ~l~~~i~~~~p~~~~~yvEpF~Gggav~~~~~~--~~~viND~n~~li   59 (275)
T d2dpma_          14 QLLPVIRELIPKTYNRYFEPFVGGGALFFDLAP--KDAVINDFNAELI   59 (275)
T ss_dssp             GGHHHHHHHSCSSCSCEEETTCTTCHHHHHHCC--SEEEEEESCHHHH
T ss_pred             HHHHHHHHhcCcccCEEEeeCCCHHHHHhhhcc--CcEEEEeCCHHHH
Confidence            355667777875 56899999999988877643  5788999999754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=85.06  E-value=0.99  Score=29.44  Aligned_cols=43  Identities=21%  Similarity=0.125  Sum_probs=31.2

Q ss_pred             hCCCCCEEEEecCC-CChHHHHHHHh-CCeEEEEeCCHHHHHHHH
Q psy13204         60 RCKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQ  102 (189)
Q Consensus        60 ~~~~~~~vlD~g~G-~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~  102 (189)
                      .++++++|+=+|+| .|.+++.+++. |++++++|.+++-.+.++
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~   71 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK   71 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHh
Confidence            45668888778876 35566666665 889999999988776654

>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N6 adenine-specific DNA methylase, DAM
domain: DNA methylase DpnM
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.74  E-value=0.96  Score=32.01  Aligned_cols=30  Identities=27%  Similarity=0.499  Sum_probs=23.7

Q ss_pred             ceEEEeCCcccCC-CCCCccEEEECCCCCCC
Q psy13204        113 KIQFIQGDFFALA-PSLQGDVVFLSPPWGGP  142 (189)
Q Consensus       113 ~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~  142 (189)
                      ++++.+.|..+.. ....-|++++||||-..
T Consensus       161 ~~~i~~~d~~~~~~~~~~~dfvYlDPPY~~~  191 (275)
T d2dpma_         161 QLEIKVGDFEKAIVDVRTGDFVYFDPPYIPL  191 (275)
T ss_dssp             EEEEEESCGGGGGTTCCTTCEEEECCCCCCC
T ss_pred             hhhhhhhhHHHHhhhhccCcEEEecCCCCCc
Confidence            6789999998865 33457899999999753

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=84.22  E-value=1.3  Score=31.01  Aligned_cols=73  Identities=12%  Similarity=0.029  Sum_probs=46.6

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      ++++|=.|++ ++++.++    ++.|++|+..|.++.  +.+....+..+.  ++..+.+|+.+..           .-.
T Consensus         5 gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~G   79 (247)
T d2ew8a1           5 DKLAVITGGA-NGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNLGR--RVLTVKCDVSQPGDVEAFGKQVISTFG   79 (247)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCch--HHHHHHHHHcCC--cEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            6667655554 4544444    455999999998764  223333444443  7888999987643           123


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        80 ~iDilVnnAG~~~   92 (247)
T d2ew8a1          80 RCDILVNNAGIYP   92 (247)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999865543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=84.08  E-value=0.7  Score=30.31  Aligned_cols=44  Identities=16%  Similarity=0.207  Sum_probs=31.5

Q ss_pred             hCCCCCEEEEecCCCChHHHH-HHHh--CCeEEEEeCCHHHHHHHHH
Q psy13204         60 RCKASDVVIDGFCGCGGNTIQ-FAAV--CQKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        60 ~~~~~~~vlD~g~G~G~~~~~-~~~~--~~~v~~vD~~~~~~~~a~~  103 (189)
                      .++++++|+=+|+|.++.... +++.  +..|+++|.+++.++.+++
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            356689999888887554433 3333  5579999999988877653

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.91  E-value=2.5  Score=29.05  Aligned_cols=64  Identities=11%  Similarity=-0.021  Sum_probs=41.5

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEE
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVF  134 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~  134 (189)
                      ++++|=.|+++ +++.++    ++.|++|+..+.+++.++.       .    ..++..+|..+..     .-...|+++
T Consensus         4 gK~~lVTGas~-GIG~aia~~l~~~Ga~V~~~~r~~~~l~~-------~----~~~~~~~Dv~~~~~~~~~~~g~iD~lV   71 (234)
T d1o5ia_           4 DKGVLVLAASR-GIGRAVADVLSQEGAEVTICARNEELLKR-------S----GHRYVVCDLRKDLDLLFEKVKEVDILV   71 (234)
T ss_dssp             TCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHH-------T----CSEEEECCTTTCHHHHHHHSCCCSEEE
T ss_pred             CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHh-------c----CCcEEEcchHHHHHHHHHHhCCCcEEE
Confidence            56676666554 455444    4559999999999876543       2    2355667766532     234799999


Q ss_pred             ECCCC
Q psy13204        135 LSPPW  139 (189)
Q Consensus       135 ~npp~  139 (189)
                      .|.-.
T Consensus        72 nnAG~   76 (234)
T d1o5ia_          72 LNAGG   76 (234)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            98643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=83.87  E-value=1.9  Score=28.05  Aligned_cols=43  Identities=28%  Similarity=0.291  Sum_probs=30.9

Q ss_pred             CCCCCEEEEecCCCCh-HHHHHHHh-C-CeEEEEeCCHHHHHHHHH
Q psy13204         61 CKASDVVIDGFCGCGG-NTIQFAAV-C-QKVISIDIDPAKLRLAQH  103 (189)
Q Consensus        61 ~~~~~~vlD~g~G~G~-~~~~~~~~-~-~~v~~vD~~~~~~~~a~~  103 (189)
                      ++++++|+=.|+|..+ .++.+++. | ..++++|.+++-++.+++
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~   75 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER   75 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh
Confidence            5668899889887544 44555554 5 578899999988777654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.29  E-value=0.81  Score=30.71  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=22.3

Q ss_pred             CCChHHHHHHH---hCCeEEEEeCCHHHHHHHH
Q psy13204         73 GCGGNTIQFAA---VCQKVISIDIDPAKLRLAQ  102 (189)
Q Consensus        73 G~G~~~~~~~~---~~~~v~~vD~~~~~~~~a~  102 (189)
                      |.|..++.+|.   .|.+|+|+|++++.++..+
T Consensus         7 GlG~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           7 GSGYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             CCSHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             CCChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            56666555543   3889999999999887654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=83.26  E-value=1.4  Score=30.88  Aligned_cols=69  Identities=17%  Similarity=0.027  Sum_probs=44.7

Q ss_pred             CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204         64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  128 (189)
Q Consensus        64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  128 (189)
                      |+++|=.|++ ++++..+    ++.|++|+..|.+++..+.+++    .    ...++..|+.+..           .-.
T Consensus         5 GK~alITGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~----~----~~~~~~~Dv~~~~~v~~~~~~~~~~~G   75 (248)
T d2d1ya1           5 GKGVLVTGGA-RGIGRAIAQAFAREGALVALCDLRPEGKEVAEA----I----GGAFFQVDLEDERERVRFVEEAAYALG   75 (248)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH----H----TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----c----CCeEEEEeCCCHHHHHHHHHHHHHhcC
Confidence            6777766654 4554444    4559999999999877654432    2    3456778877642           124


Q ss_pred             CccEEEECCCCCC
Q psy13204        129 QGDVVFLSPPWGG  141 (189)
Q Consensus       129 ~~D~v~~npp~~~  141 (189)
                      ..|+++.|.-...
T Consensus        76 ~iDiLVnnAG~~~   88 (248)
T d2d1ya1          76 RVDVLVNNAAIAA   88 (248)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCeEEEeCcCCC
Confidence            7899998865443

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=82.57  E-value=0.81  Score=32.90  Aligned_cols=68  Identities=19%  Similarity=0.214  Sum_probs=40.9

Q ss_pred             EEEEecCCCChHHHHHHH----hCCeEEEEe-CCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------CCCCccEEE
Q psy13204         66 VVIDGFCGCGGNTIQFAA----VCQKVISID-IDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVVF  134 (189)
Q Consensus        66 ~vlD~g~G~G~~~~~~~~----~~~~v~~vD-~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v~  134 (189)
                      +|| +..|+|..+..+.+    +|.+|+++| ++............  .. .+++++.+|+.+..      ....+|+|+
T Consensus         2 KIL-VTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~--~~-~~~~~i~~Di~~~~~l~~~~~~~~~d~Vi   77 (338)
T d1orra_           2 KLL-ITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS--SL-GNFEFVHGDIRNKNDVTRLITKYMPDSCF   77 (338)
T ss_dssp             EEE-EETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH--TT-CCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             EEE-EECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh--cc-CCcEEEEcccCCHHHHHHHHHhcCCceEE
Confidence            344 66788888876654    489999998 33322211111122  12 47899999987643      223579988


Q ss_pred             ECC
Q psy13204        135 LSP  137 (189)
Q Consensus       135 ~np  137 (189)
                      -..
T Consensus        78 h~a   80 (338)
T d1orra_          78 HLA   80 (338)
T ss_dssp             ECC
T ss_pred             eec
Confidence            643

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=80.92  E-value=4.9  Score=27.62  Aligned_cols=77  Identities=10%  Similarity=-0.085  Sum_probs=50.4

Q ss_pred             CCEEEEecCCC--C---hHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204         64 SDVVIDGFCGC--G---GNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  127 (189)
Q Consensus        64 ~~~vlD~g~G~--G---~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  127 (189)
                      ++++|=.|+++  |   ..+..+++.|++|+..+.+++..+.+.+.....+   .......|..+..           ..
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---SDIVLQCDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcC---CcceeecccchHHHHHHHHHHhhhcc
Confidence            67787777655  4   2556667779999999999887777766655554   3344455543321           33


Q ss_pred             CCccEEEECCCCCCCc
Q psy13204        128 LQGDVVFLSPPWGGPE  143 (189)
Q Consensus       128 ~~~D~v~~npp~~~~~  143 (189)
                      ...|.++.|..+....
T Consensus        82 ~~~d~~v~~a~~~~~~   97 (258)
T d1qsga_          82 PKFDGFVHSIGFAPGD   97 (258)
T ss_dssp             SSEEEEEECCCCCCGG
T ss_pred             cccceEEEeecccccc
Confidence            5788999887665433

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.70  E-value=2.6  Score=29.17  Aligned_cols=72  Identities=10%  Similarity=0.046  Sum_probs=47.4

Q ss_pred             CEEEEecCCCChHHHHHHH-------hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------------
Q psy13204         65 DVVIDGFCGCGGNTIQFAA-------VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------------  125 (189)
Q Consensus        65 ~~vlD~g~G~G~~~~~~~~-------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------------  125 (189)
                      ++|| +..|+++++.++++       .|++|+..+.+++.++.+++... .+  .++.++..|..+..            
T Consensus         3 Ktil-ITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           3 NSIL-ITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK-NH--SNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             SEEE-ESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHH-HC--TTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CEEE-EeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHh-cC--CcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            3566 44455566666553       37899999999877766554333 23  37889999987643            


Q ss_pred             -CCCCccEEEECCCCC
Q psy13204        126 -PSLQGDVVFLSPPWG  140 (189)
Q Consensus       126 -~~~~~D~v~~npp~~  140 (189)
                       .....|+++.|.-..
T Consensus        79 ~~~~~iDiLvnNAg~~   94 (248)
T d1snya_          79 TKDQGLNVLFNNAGIA   94 (248)
T ss_dssp             HGGGCCSEEEECCCCC
T ss_pred             hhcCCcceEEeecccc
Confidence             123689999986543