Psyllid ID: psy13217

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
MSVLSMSGESEIPHKSLINIEESDEDIPASKKFKSVYTVSLSDKFQTLDFSVKQSKLSNYFQGGQSSLVGFYVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYKLVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDAPQPFPEDGYSSLYKIIFTKDCSIEYLQQVRQDMLLNVSEDDKDKLLDLSPFMNKNLFFVRRKT
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccHHHHHHHHHHcHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccEEEcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHccccccccccccccccccccccccccEEEEEccc
ccccEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHcccccHHHccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccEEEcccHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccEcccEEEEccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHccccHHccccEEEEEccc
msvlsmsgeseiphkslinieesdedipaskkfkSVYTVSLsdkfqtldfsvkqsklsnyfqggqssLVGFYVLRWAMVVLTGVMVGVIHFIMHagvtfgssLKVQWLEVitdgfpqdvWRTYLGLAGFNMIFLGIACALCLFFAMeasggnvsGVMAYLNGSRIKKFFTIRTVLVKMCSTtammctatpggmegpiihigaavgniapiviaklplptkfrtapslaylnsvserrdlsvcgvaagvsagfgapfgGIFLALEEtttffsaemlprLVVGSFLAKFISDILEQsfveselepgemfYKLVPHlrlaevltpeneqkgnypivtpdkkvigDISRCLLYKLMASqvfdapqpfpedgyssLYKIIFTKDCSIEYLQQVRQDMLLnvseddkdklldlspfmnknlFFVRRKT
msvlsmsgeseiphkslinieesdedipasKKFKSVYTVSLSDKFQTLDFSVKQSKLSNYFQGGQSSLVGFYVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYKLVPHLRLAEVltpeneqkgnypivtpdkkvIGDISRCLLYKLMASQVFDAPQPFPEDGYSSLYKIIFTKDCSIEYLQQVRQDMLLNVSEDDKdklldlspfmnknlffvrrkt
MSVLSMSGESEIPHKSLINIEESDEDIPASKKFKSVYTVSLSDKFQTLDFSVKQSKLSNYFQGGQSSLVGFYVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKmcsttammctatPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCgvaagvsagfgapfggIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYKLVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDAPQPFPEDGYSSLYKIIFTKDCSIEYLQQVRQDMLLNVSEddkdklldlSPFMNKNLFFVRRKT
*********************************KSVYTVSLSDKFQTLDFSVKQSKLSNYFQGGQSSLVGFYVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYKLVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDAPQPFPEDGYSSLYKIIFTKDCSIEYLQQVRQDMLLNVSEDDKDKLLDLSPFMNKNLFFV****
**********************************SVYTVSLSDKFQTLDFSVKQSKLSNYFQGGQSSLVGFYVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYKLVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDAPQPFPEDGYSSLYKIIFTKDCSIEYLQQVRQDMLLNVSEDDKDKLLDLSPFMNKNLFFVRRK*
***********IPHKSLINIEESDEDIPASKKFKSVYTVSLSDKFQTLDFSVKQSKLSNYFQGGQSSLVGFYVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYKLVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDAPQPFPEDGYSSLYKIIFTKDCSIEYLQQVRQDMLLNVSEDDKDKLLDLSPFMNKNLFFVRRKT
*****************************************SDKFQTLDFSVKQSKLSNYFQGGQSSLVGFYVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYKLVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDAPQPFPEDGYSSLYKIIFTKDCSIEYLQQVRQDMLLNVSEDDKDKLLDLSPFMNKNLFFVRR**
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSVLSMSGESEIPHKSLINIEESDEDIPASKKFKSVYTVSLSDKFQTLDFSVKQSKLSNYFQGGQSSLVGFYVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYKLVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDAPQPFPEDGYSSLYKIIFTKDCSIEYLQQVRQDMLLNVSEDDKDKLLDLSPFMNKNLFFVRRKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query422 2.2.26 [Sep-21-2011]
P92941 775 Chloride channel protein yes N/A 0.637 0.347 0.260 8e-22
P92942 780 Chloride channel protein no N/A 0.578 0.312 0.267 1e-21
Q75JF3 757 Chloride channel protein yes N/A 0.566 0.315 0.278 7e-21
Q1ZXJ0 1000 Chloride channel protein no N/A 0.568 0.24 0.270 1e-18
P60300 765 Putative chloride channel no N/A 0.528 0.291 0.288 6e-18
Q96282 779 Chloride channel protein no N/A 0.573 0.310 0.273 6e-17
Q86AZ6 815 Chloride channel protein no N/A 0.597 0.309 0.298 2e-16
Q54AX6 863 Chloride channel protein no N/A 0.573 0.280 0.284 5e-14
Q9VGH7 1193 Chloride channel protein yes N/A 0.424 0.150 0.252 3e-11
P35524 994 Chloride channel protein yes N/A 0.367 0.155 0.247 2e-10
>sp|P92941|CLCA_ARATH Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2 Back     alignment and function desciption
 Score =  105 bits (261), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 141/296 (47%), Gaps = 27/296 (9%)

Query: 19  NIEESDED-------IPASKKFKSVYTVSLS------DKFQTLDFSVKQSKL--SNYFQG 63
           N EE  ED        P  K+ +++ +  L+         ++LD+ + ++ L   ++   
Sbjct: 15  NGEEEGEDPENNTLNQPLLKRHRTLSSTPLALVGAKVSHIESLDYEINENDLFKHDWRSR 74

Query: 64  GQSSLVGFYVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQD-VWRT 122
            ++ +  +  L+W +  L G+  G+I  +++  V   +  K   L  +     QD  W  
Sbjct: 75  SKAQVFQYIFLKWTLACLVGLFTGLIATLINLAVENIAGYK---LLAVGYYIAQDRFWTG 131

Query: 123 YLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTT 182
            +   G N+    +A  L ++FA  A+G  +  + AYLNG      F   T++VK+  + 
Sbjct: 132 LMVFTGANLGLTLVATVLVVYFAPTAAGPGIPEIKAYLNGIDTPNMFGFTTMMVKIVGSI 191

Query: 183 AMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVC 242
             +      G EGP++HIG+    IA ++    P   + +    L Y N+  +RRDL  C
Sbjct: 192 GAVAAGLDLGKEGPLVHIGSC---IASLLGQGGPDNHRIKWR-WLRYFNNDRDRRDLITC 247

Query: 243 GVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILEQSFVE 298
           G A+GV A F +P GG+  ALEE  T++ + +L R    +F +  +  ++ ++F+E
Sbjct: 248 GSASGVCAAFRSPVGGVLFALEEVATWWRSALLWR----TFFSTAVVVVVLRAFIE 299
Voltage-gated chloride channel that could play a role in the regulation of nitrate content.
Arabidopsis thaliana (taxid: 3702)
>sp|P92942|CLCB_ARATH Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1 Back     alignment and function description
>sp|Q75JF3|CLCC_DICDI Chloride channel protein C OS=Dictyostelium discoideum GN=clcC PE=3 SV=1 Back     alignment and function description
>sp|Q1ZXJ0|CLCD_DICDI Chloride channel protein D OS=Dictyostelium discoideum GN=clcD PE=3 SV=1 Back     alignment and function description
>sp|P60300|CLCG_ARATH Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=2 SV=2 Back     alignment and function description
>sp|Q96282|CLCC_ARATH Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1 Back     alignment and function description
>sp|Q86AZ6|CLCB_DICDI Chloride channel protein B OS=Dictyostelium discoideum GN=clcB PE=3 SV=1 Back     alignment and function description
>sp|Q54AX6|CLCA_DICDI Chloride channel protein A OS=Dictyostelium discoideum GN=clcA PE=2 SV=1 Back     alignment and function description
>sp|Q9VGH7|CLCN2_DROME Chloride channel protein 2 OS=Drosophila melanogaster GN=ClC-a PE=2 SV=3 Back     alignment and function description
>sp|P35524|CLCN1_RAT Chloride channel protein 1 OS=Rattus norvegicus GN=Clcn1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
242096582 801 hypothetical protein SORBIDRAFT_10g02609 0.575 0.303 0.286 2e-23
413954994 801 chloride channel protein [Zea mays] 0.575 0.303 0.286 3e-23
308044257 792 chloride channel protein [Zea mays] gi|2 0.575 0.306 0.286 3e-23
196002499 884 hypothetical protein TRIADDRAFT_54756 [T 0.537 0.256 0.309 3e-23
357153660 790 PREDICTED: chloride channel protein CLC- 0.563 0.301 0.271 9e-23
326504374 782 predicted protein [Hordeum vulgare subsp 0.578 0.312 0.275 3e-22
222617013 716 hypothetical protein OsJ_35963 [Oryza sa 0.580 0.342 0.280 7e-22
326518344 787 predicted protein [Hordeum vulgare subsp 0.580 0.311 0.272 8e-22
356571521 790 PREDICTED: chloride channel protein CLC- 0.663 0.354 0.253 8e-22
449441686 789 PREDICTED: chloride channel protein CLC- 0.668 0.357 0.262 1e-21
>gi|242096582|ref|XP_002438781.1| hypothetical protein SORBIDRAFT_10g026090 [Sorghum bicolor] gi|241917004|gb|EER90148.1| hypothetical protein SORBIDRAFT_10g026090 [Sorghum bicolor] Back     alignment and taxonomy information
 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 46  QTLDFSVKQSKLSNYFQGGQSSL--VGFYVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSL 103
           ++LD+ + ++ L  +    +S++  + +  L+WAM  L G++ GVI  +++  +   S L
Sbjct: 82  ESLDYEIIENDLFKHDWRSRSNVEVLQYIFLKWAMAFLVGLLTGVIASLINLAIENISGL 141

Query: 104 KVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGS 163
           K+Q +  +     +  W  +L  AG N     +A  LC+ FA  A+G  +  + AYLNG 
Sbjct: 142 KMQHMVNLVR--EKRYWAGFLYFAGVNFALTFVAAVLCVVFAPTAAGPGIPEIKAYLNGV 199

Query: 164 RIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRT 223
                F    ++VK+  +   + +    G EGP++HIGA + N+    +++         
Sbjct: 200 DTPNMFGAPQLIVKIIGSIGAVSSGMDLGKEGPLVHIGACLANL----LSQGGEGRWRLR 255

Query: 224 APSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSF 283
              L Y N+  +RRDL  CG ++GV A F AP GG+  ALEE  T++ + +L R    +F
Sbjct: 256 WRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWR----TF 311

Query: 284 LAKFISDILEQSFVE 298
            +     ++ + F+E
Sbjct: 312 FSTATVVVVLRGFIE 326

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|413954994|gb|AFW87643.1| chloride channel protein [Zea mays] Back     alignment and taxonomy information
>gi|308044257|ref|NP_001183936.1| chloride channel protein [Zea mays] gi|257802572|gb|ACV66338.1| chloride channel protein [Zea mays] Back     alignment and taxonomy information
>gi|196002499|ref|XP_002111117.1| hypothetical protein TRIADDRAFT_54756 [Trichoplax adhaerens] gi|190587068|gb|EDV27121.1| hypothetical protein TRIADDRAFT_54756 [Trichoplax adhaerens] Back     alignment and taxonomy information
>gi|357153660|ref|XP_003576525.1| PREDICTED: chloride channel protein CLC-a-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|326504374|dbj|BAJ91019.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|222617013|gb|EEE53145.1| hypothetical protein OsJ_35963 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|326518344|dbj|BAJ88201.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|356571521|ref|XP_003553925.1| PREDICTED: chloride channel protein CLC-b-like [Glycine max] Back     alignment and taxonomy information
>gi|449441686|ref|XP_004138613.1| PREDICTED: chloride channel protein CLC-b-like [Cucumis sativus] gi|449523299|ref|XP_004168661.1| PREDICTED: chloride channel protein CLC-b-like [Cucumis sativus] gi|386649465|gb|AFJ15538.1| chloride channel a [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
DICTYBASE|DDB_G0276865 815 clcB "CLC 6/7 family protein" 0.594 0.307 0.255 5e-14
TAIR|locus:2158809 779 CLC-C "chloride channel C" [Ar 0.573 0.310 0.230 1.1e-12
TAIR|locus:2164466 775 CLC-A "chloride channel A" [Ar 0.571 0.310 0.245 1.7e-12
TAIR|locus:2095123 780 CLC-B "chloride channel B" [Ar 0.573 0.310 0.238 6.4e-12
DICTYBASE|DDB_G0276229 757 clcC "CLC 6/7 family protein" 0.578 0.322 0.238 8e-12
DICTYBASE|DDB_G0278639 1000 clcD "CLC 6/7 family protein" 0.580 0.245 0.236 1e-11
ZFIN|ZDB-GENE-061103-196 795 clcn7 "chloride channel 7" [Da 0.694 0.368 0.232 1.9e-10
DICTYBASE|DDB_G0294096 863 clcA "CLC 6/7 family protein" 0.580 0.283 0.237 2.3e-10
WB|WBGene00000533 796 clh-6 [Caenorhabditis elegans 0.575 0.305 0.218 3.8e-09
UNIPROTKB|E1BZI1 868 CLCN6 "Uncharacterized protein 0.703 0.342 0.236 4.5e-09
DICTYBASE|DDB_G0276865 clcB "CLC 6/7 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 211 (79.3 bits), Expect = 5.0e-14, P = 5.0e-14
 Identities = 67/262 (25%), Positives = 115/262 (43%)

Query:    41 LSDKFQTLDFSVKQSKLSN-Y-FQGGQSSLVGFYVLRWAMVVLTGVMVGVIHFIMHAGVT 98
             L   F++LDF+   + +   Y F+  +   +   + +W +  L GV+VG++ + +   V 
Sbjct:    63 LMSHFESLDFNAIDNIIHRKYTFEKKKYQKILKTLGKWVICTLIGVVVGLVCYCLKESVD 122

Query:    99 FGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACAL--CLFFAMEASGGNVSGV 156
                SLK+  ++         ++  +L   GFN+ + G+   L  C+F  M +S G +  V
Sbjct:   123 QLQSLKLTQVKKFYST-ESTIFIPFLVYLGFNLCY-GLISGLLVCIFGPMSSSSG-LPEV 179

Query:   157 MAYLNGSRIKKFFTIRTVLVKXXXXXXXXXXXXPGGMEGPIIHIGAAVGNIAPIVIAKLP 216
               YLNG RI K F ++TVL K              G EGP+ HIGA +G+      +K  
Sbjct:   180 KGYLNGIRISKAFNLKTVLGKLVSLIFSFSSGLVLGPEGPMFHIGAGIGSSMSQFKSKT- 238

Query:   217 LPTKFRTAPSLAYLNSVSERRDLSVCXXXXXXXXXXXXXXXXIFLALEETTTFFSAEMLP 276
                KF       + N  S++RD   C                +   LEE ++F+S ++  
Sbjct:   239 --LKFHLKSFWIFQND-SDKRDFISCGAAAGIAAAFGAPIGGVLFCLEEGSSFWSRQLTW 295

Query:   277 RLVVGSFLAKFISDILEQSFVE 298
             R      +A   +++  Q F +
Sbjct:   296 RTFFSCLIATMTANLFLQGFTQ 317
GO:0055085 "transmembrane transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0006821 "chloride transport" evidence=IEA
GO:0005247 "voltage-gated chloride channel activity" evidence=IEA
GO:0005216 "ion channel activity" evidence=IEA
GO:0034765 "regulation of ion transmembrane transport" evidence=IEA
GO:0034707 "chloride channel complex" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0006811 "ion transport" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0005254 "chloride channel activity" evidence=IEA
GO:0005244 "voltage-gated ion channel activity" evidence=IEA
TAIR|locus:2158809 CLC-C "chloride channel C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164466 CLC-A "chloride channel A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095123 CLC-B "chloride channel B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276229 clcC "CLC 6/7 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278639 clcD "CLC 6/7 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061103-196 clcn7 "chloride channel 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0294096 clcA "CLC 6/7 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00000533 clh-6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZI1 CLCN6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
cd03685466 cd03685, ClC_6_like, ClC-6-like chloride channel p 2e-35
cd01036416 cd01036, ClC_euk, Chloride channel, ClC 1e-24
cd01031402 cd01031, EriC, ClC chloride channel EriC 1e-20
pfam00654345 pfam00654, Voltage_CLC, Voltage gated chloride cha 2e-19
COG0038 443 COG0038, EriC, Chloride channel protein EriC [Inor 3e-15
cd03684 445 cd03684, ClC_3_like, ClC-3-like chloride channel p 4e-15
cd03683426 cd03683, ClC_1_like, ClC-1-like chloride channel p 1e-14
cd00400383 cd00400, Voltage_gated_ClC, CLC voltage-gated chlo 3e-13
PRK05277 438 PRK05277, PRK05277, chloride channel protein; Prov 6e-09
pfam00654345 pfam00654, Voltage_CLC, Voltage gated chloride cha 1e-08
cd01034390 cd01034, EriC_like, ClC chloride channel family 2e-07
cd01031402 cd01031, EriC, ClC chloride channel EriC 5e-05
cd01034390 cd01034, EriC_like, ClC chloride channel family 6e-04
cd00400383 cd00400, Voltage_gated_ClC, CLC voltage-gated chlo 8e-04
cd03682378 cd03682, ClC_sycA_like, ClC sycA-like chloride cha 0.004
>gnl|CDD|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins Back     alignment and domain information 
 Score =  135 bits (343), Expect = 2e-35
 Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 12/255 (4%)

Query: 46  QTLDFSVKQSKLSNYFQGGQSSLVGFY--VLRWAMVVLTGVMVGVIHFIMHAGVTFGSSL 103
           ++LD+ V ++ L       +          L+W + +L G+  G++ + +   V   + L
Sbjct: 1   ESLDYEVIENDLFREEWRKRKKKQVLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGL 60

Query: 104 KVQWLE-VITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNG 162
           K   ++  I  G    ++  +L   G N++ + +A  L  + A  A+G  +  V  YLNG
Sbjct: 61  KFLVVKNYIEKG---RLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNG 117

Query: 163 SRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFR 222
            +I     ++T+LVK+      +      G EGP+IHIGA +     +        T  R
Sbjct: 118 VKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAG--LSQGG---STSLR 172

Query: 223 -TAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVG 281
                  Y  +  ++RD   CG AAGV+A FGAP GG+  +LEE  +F++  +  R    
Sbjct: 173 LDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFS 232

Query: 282 SFLAKFISDILEQSF 296
           S +  F  +      
Sbjct: 233 SMIVTFTLNFFLSGC 247

This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. Length = 466
>gnl|CDD|238507 cd01036, ClC_euk, Chloride channel, ClC Back     alignment and domain information
>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC Back     alignment and domain information
>gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel Back     alignment and domain information
>gnl|CDD|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins Back     alignment and domain information
>gnl|CDD|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins Back     alignment and domain information
>gnl|CDD|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel Back     alignment and domain information
>gnl|CDD|235385 PRK05277, PRK05277, chloride channel protein; Provisional Back     alignment and domain information
>gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel Back     alignment and domain information
>gnl|CDD|238506 cd01034, EriC_like, ClC chloride channel family Back     alignment and domain information
>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC Back     alignment and domain information
>gnl|CDD|238506 cd01034, EriC_like, ClC chloride channel family Back     alignment and domain information
>gnl|CDD|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel Back     alignment and domain information
>gnl|CDD|239654 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 422
KOG0474|consensus 762 100.0
cd03685466 ClC_6_like ClC-6-like chloride channel proteins. T 100.0
KOG0475|consensus 696 100.0
cd03683 426 ClC_1_like ClC-1-like chloride channel proteins. T 100.0
cd03684 445 ClC_3_like ClC-3-like chloride channel proteins. T 100.0
cd01036416 ClC_euk Chloride channel, ClC. These domains are f 100.0
KOG0476|consensus 931 100.0
PRK01610 418 putative voltage-gated ClC-type chloride channel C 100.0
PRK01862 574 putative voltage-gated ClC-type chloride channel C 100.0
cd01034390 EriC_like ClC chloride channel family. These prote 100.0
PRK05277 438 chloride channel protein; Provisional 100.0
cd01031 402 EriC ClC chloride channel EriC. This domain is fou 100.0
cd01033388 ClC_like Putative ClC chloride channel. Clc protei 100.0
COG0038 443 EriC Chloride channel protein EriC [Inorganic ion 100.0
cd03682378 ClC_sycA_like ClC sycA-like chloride channel prote 100.0
PF00654355 Voltage_CLC: Voltage gated chloride channel Mutati 100.0
cd00400383 Voltage_gated_ClC CLC voltage-gated chloride chann 100.0
PRK03655414 putative ion channel protein; Provisional 99.98
cd01034390 EriC_like ClC chloride channel family. These prote 99.86
cd01033388 ClC_like Putative ClC chloride channel. Clc protei 99.85
PRK05277438 chloride channel protein; Provisional 99.82
cd00400383 Voltage_gated_ClC CLC voltage-gated chloride chann 99.79
PRK01862574 putative voltage-gated ClC-type chloride channel C 99.79
PRK01610418 putative voltage-gated ClC-type chloride channel C 99.79
cd01031402 EriC ClC chloride channel EriC. This domain is fou 99.75
cd03682378 ClC_sycA_like ClC sycA-like chloride channel prote 99.73
PF00654355 Voltage_CLC: Voltage gated chloride channel Mutati 99.61
COG0038443 EriC Chloride channel protein EriC [Inorganic ion 99.58
cd03684445 ClC_3_like ClC-3-like chloride channel proteins. T 99.56
PRK03655414 putative ion channel protein; Provisional 99.52
cd03685466 ClC_6_like ClC-6-like chloride channel proteins. T 99.43
cd01036416 ClC_euk Chloride channel, ClC. These domains are f 99.42
cd03683426 ClC_1_like ClC-1-like chloride channel proteins. T 99.28
KOG0475|consensus696 98.48
KOG0474|consensus762 95.67
KOG0476|consensus 931 86.64
>KOG0474|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.3e-65  Score=521.68  Aligned_cols=351  Identities=22%  Similarity=0.315  Sum_probs=287.6

Q ss_pred             ccCcccccccccchhhhhhhhccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcC----
Q psy13217         42 SDKFQTLDFSVKQSKLSNYFQGGQ--SSLVGFYVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLE-VITDG----  114 (422)
Q Consensus        42 ~~~~esldy~~~~~~~~~~~~r~~--~~~~~~~~~~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~-~~~~~----  114 (422)
                      +.+|||||||.+|||+|+++||++  .+.+++...||.++++||+++|+++.++++.+|.+..+|+.... ++.+.    
T Consensus        52 ~~~yESLDYei~ENdlf~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~  131 (762)
T KOG0474|consen   52 VCDYESLDYEICENDLFLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQK  131 (762)
T ss_pred             CCCccccchhhhcchHHHHHHHhhcccceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhcc
Confidence            468999999999999999999653  44567788999999999999999999999999999999999886 44432    


Q ss_pred             -CCCchhHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhcCCCCCc
Q psy13217        115 -FPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGM  193 (422)
Q Consensus       115 -~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGipei~~~l~G~~~~~~l~~~~l~~K~i~~~lsv~sG~s~Gr  193 (422)
                       .++..++.|+   .+++.+.++++.++.+++|.|+||||||||+||||++.|+.++++|+++|+++++++|++|+.+||
T Consensus       132 g~~~~~~l~~~---g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GK  208 (762)
T KOG0474|consen  132 GCLALSLLVLL---GFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGK  208 (762)
T ss_pred             ccHHHHHHHHH---HHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccC
Confidence             2444444444   899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHhhCCCCccccccc-cccccCChhhhhHHHHHhHHHhhhhhcCCchhHhHhHhhhccccccc
Q psy13217        194 EGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAP-SLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSA  272 (422)
Q Consensus       194 EGP~v~iGA~ig~~l~~~~~~l~~~~~~~l~~-~~~~~~~~~~~r~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~  272 (422)
                      ||||||.||++|+.++|.     +|++++++| |++||+||+|||+++.||+|||+||+|+||+||++|++||.+++|+.
T Consensus       209 EGPMIHsGa~Vaagl~QG-----~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq  283 (762)
T KOG0474|consen  209 EGPMIHSGSVVAAGLGQG-----GSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQ  283 (762)
T ss_pred             cCCeeehhHHHHhcccCC-----CccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHh
Confidence            999999999999999999     899999999 99999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHH-HHhhhh-hccccCccccccccccccccccccCcCcCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy13217        273 EMLPRLVVGSFLAKFISD-ILEQSF-VESELEPGEMFYKLVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYK  350 (422)
Q Consensus       273 ~~l~~~~~as~iA~~v~~-~l~~~~-~~~~~~p~~~~~g~~p~f~i~~~~~~~~~~~~~~~~~~~lGv~~Gl~g~lF~~~  350 (422)
                      .++|++|+++++++++.+ ++..+. |+.    |  .||..-.+++...+.+...+..+++.++++|++.|++|++|+.+
T Consensus       284 ~L~WR~fFss~i~~f~l~~~i~~~~~G~~----g--~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~L  357 (762)
T KOG0474|consen  284 ALLWRTFFSSAIVAFVLRAFILSCLSGKC----G--LFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYL  357 (762)
T ss_pred             hHHHHHHHHhHHHHHhHHHHHHHHhcCch----h--ccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHH
Confidence            999999999999999999 444333 110    0  12222222222211122347789999999999999999999999


Q ss_pred             -HHHhhhhhC--CCCCcchhh-------hhHHHHH--h-----------------hccCCcccccccccccccCCchhHh
Q psy13217        351 -LMASQVFDA--PQPFPEDGY-------SSLYKII--F-----------------TKDCSIEYLQQVRQDMLLNVSEDDK  401 (422)
Q Consensus       351 -l~~~~~~~~--~~~~p~~~~-------~gli~~~--~-----------------~~~~~~~~y~gl~~~~~~~~~~~~~  401 (422)
                       ++.++..++  |.+.-++..       +..+...  +                 +..|+.++||++ |++++||+||++
T Consensus       358 n~~~~~~r~~~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~f~Cp~~~YNdl-AtL~fnt~ddaV  436 (762)
T KOG0474|consen  358 NLKKVLRRYNYEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPTFFCPDGEYNDL-ATLFFNTNDDAV  436 (762)
T ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCccccCCCCchhHH-HHHHcCCcHHHH
Confidence             665544332  222222211       1100000  0                 016788899999 999999999999


Q ss_pred             hcccCC
Q psy13217        402 DKLLDL  407 (422)
Q Consensus       402 ~~~l~~  407 (422)
                      |++-+.
T Consensus       437 rnLFh~  442 (762)
T KOG0474|consen  437 RNLFHS  442 (762)
T ss_pred             HHHhcC
Confidence            999554

>cd03685 ClC_6_like ClC-6-like chloride channel proteins Back     alignment and domain information
>KOG0475|consensus Back     alignment and domain information
>cd03683 ClC_1_like ClC-1-like chloride channel proteins Back     alignment and domain information
>cd03684 ClC_3_like ClC-3-like chloride channel proteins Back     alignment and domain information
>cd01036 ClC_euk Chloride channel, ClC Back     alignment and domain information
>KOG0476|consensus Back     alignment and domain information
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional Back     alignment and domain information
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional Back     alignment and domain information
>cd01034 EriC_like ClC chloride channel family Back     alignment and domain information
>PRK05277 chloride channel protein; Provisional Back     alignment and domain information
>cd01031 EriC ClC chloride channel EriC Back     alignment and domain information
>cd01033 ClC_like Putative ClC chloride channel Back     alignment and domain information
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins Back     alignment and domain information
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease Back     alignment and domain information
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel Back     alignment and domain information
>PRK03655 putative ion channel protein; Provisional Back     alignment and domain information
>cd01034 EriC_like ClC chloride channel family Back     alignment and domain information
>cd01033 ClC_like Putative ClC chloride channel Back     alignment and domain information
>PRK05277 chloride channel protein; Provisional Back     alignment and domain information
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel Back     alignment and domain information
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional Back     alignment and domain information
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional Back     alignment and domain information
>cd01031 EriC ClC chloride channel EriC Back     alignment and domain information
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins Back     alignment and domain information
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease Back     alignment and domain information
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03684 ClC_3_like ClC-3-like chloride channel proteins Back     alignment and domain information
>PRK03655 putative ion channel protein; Provisional Back     alignment and domain information
>cd03685 ClC_6_like ClC-6-like chloride channel proteins Back     alignment and domain information
>cd01036 ClC_euk Chloride channel, ClC Back     alignment and domain information
>cd03683 ClC_1_like ClC-1-like chloride channel proteins Back     alignment and domain information
>KOG0475|consensus Back     alignment and domain information
>KOG0474|consensus Back     alignment and domain information
>KOG0476|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
3org_A 632 CMCLC; transporter, transport protein; 3.50A {Cyan 8e-36
3org_A632 CMCLC; transporter, transport protein; 3.50A {Cyan 4e-04
1ots_A 465 Voltage-gated CLC-type chloride channel ERIC; CLC 2e-21
1ots_A465 Voltage-gated CLC-type chloride channel ERIC; CLC 2e-08
3nd0_A 466 SLL0855 protein; CLC family CL-/H+ antiporter, CLC 8e-21
3nd0_A466 SLL0855 protein; CLC family CL-/H+ antiporter, CLC 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632 Back     alignment and structure
 Score =  138 bits (349), Expect = 8e-36
 Identities = 39/224 (17%), Positives = 85/224 (37%), Gaps = 21/224 (9%)

Query: 72  YVLR-WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFN 130
           Y+LR    + L GV   +  F +   V     L+++   +         +  Y+      
Sbjct: 6   YLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLA------GRFAGYILYVVSG 59

Query: 131 MIFLGIACALCLFFAMEASGGNVSGVMAYLNG--SRIKKFFTIRTVLVKMCSTTAMMCTA 188
           +    ++   C   + EA G  +  + + L+G   +++    +R +  K       +   
Sbjct: 60  VALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGG 119

Query: 189 TPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGV 248
            P G EGP +HI   + +       +L +  +             + R        A G+
Sbjct: 120 LPVGWEGPNVHIACIIAHQ----FYRLGVFKELC--------TDRALRLQTLAAACAVGL 167

Query: 249 SAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDIL 292
           ++ FGAP GG+  ++E   +F+  +   + V+ +     + ++L
Sbjct: 168 ASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELL 211
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632 Back     alignment and structure
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Length = 465 Back     alignment and structure
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Length = 465 Back     alignment and structure
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Length = 466 Back     alignment and structure
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Length = 466 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
3nd0_A 466 SLL0855 protein; CLC family CL-/H+ antiporter, CLC 100.0
4ene_A 446 CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem 100.0
1ots_A 465 Voltage-gated CLC-type chloride channel ERIC; CLC 100.0
3org_A 632 CMCLC; transporter, transport protein; 3.50A {Cyan 100.0
4ene_A446 CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem 99.68
1ots_A465 Voltage-gated CLC-type chloride channel ERIC; CLC 99.66
3nd0_A466 SLL0855 protein; CLC family CL-/H+ antiporter, CLC 99.65
3org_A632 CMCLC; transporter, transport protein; 3.50A {Cyan 99.36
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Back     alignment and structure
Probab=100.00  E-value=1.7e-45  Score=382.90  Aligned_cols=287  Identities=17%  Similarity=0.213  Sum_probs=215.7

Q ss_pred             ccccccchhhhhhhhcc-cchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHH
Q psy13217         48 LDFSVKQSKLSNYFQGG-QSSLVGFYVLR-WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLG  125 (422)
Q Consensus        48 ldy~~~~~~~~~~~~r~-~~~~~~~~~~~-w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~  125 (422)
                      +|||.+++. +.++.|+ ..+..++...+ ++.++++|+++|+++.+|+.++++++++++++.+... ..++..|+.++ 
T Consensus         3 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~-   79 (466)
T 3nd0_A            3 ADFETSNRR-WLDKLPRNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQILA-PIPPLAWLVTA-   79 (466)
T ss_dssp             ------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST-TSCTHHHHHHH-
T ss_pred             ccHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccHHHHHHHH-
Confidence            689998444 4333322 22223333334 4489999999999999999999999999988754221 11222344433 


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHH
Q psy13217        126 LAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVG  205 (422)
Q Consensus       126 ~~~~~~~~~~i~~~l~~~~~p~a~GsGipei~~~l~G~~~~~~l~~~~l~~K~i~~~lsv~sG~s~GrEGP~v~iGA~ig  205 (422)
                        +++.+++.+++++++++.|.++|||||||+++++|..  +..+.++++.|++++++++++|+|+|||||++|+||++|
T Consensus        80 --~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~~l~g~~--~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig  155 (466)
T 3nd0_A           80 --LISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKL--PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIG  155 (466)
T ss_dssp             --HHHHHHHHHHHHHHTTTCGGGSBCSHHHHHHHTTSSS--CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHCCCcCCCCHHHHHHHHcCCC--CCchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHH
Confidence              4566667778888888999999999999999999864  345679999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCccccccccccccCChhhhhHHHHHhHHHhhhhhcCCchhHhHhHhhhccccccc--chHHHHHHHHH
Q psy13217        206 NIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSA--EMLPRLVVGSF  283 (422)
Q Consensus       206 ~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~r~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~--~~l~~~~~as~  283 (422)
                      +.++|+         ++        ++++|+|++++||+|||+||+|||||+|++|++||+.++|++  ..++|++++|+
T Consensus       156 ~~l~~~---------~~--------~~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~  218 (466)
T 3nd0_A          156 QMTGGW---------FK--------ATQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCV  218 (466)
T ss_dssp             HHHHHH---------TT--------CCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHH
T ss_pred             HHHHHH---------cC--------CChhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence            999998         33        478899999999999999999999999999999999988854  55679999999


Q ss_pred             HHHHHHHHHhhhhhccccCccccccccccccccccccCcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCC-
Q psy13217        284 LAKFISDILEQSFVESELEPGEMFYKLVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDAPQP-  362 (422)
Q Consensus       284 iA~~v~~~l~~~~~~~~~~p~~~~~g~~p~f~i~~~~~~~~~~~~~~~~~~~lGv~~Gl~g~lF~~~l~~~~~~~~~~~-  362 (422)
                      +|+++++.+               +|.+|.|.++....   .+..++++++++|++||++|.+|++.+.+.++++++.+ 
T Consensus       219 ~a~~v~~~~---------------~g~~~~f~~~~~~~---~~~~~l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~~  280 (466)
T 3nd0_A          219 MATIILRMI---------------RGQSAIISLTEFKR---VPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLPP  280 (466)
T ss_dssp             HHHHHHHHH---------------TCSSCSSCCTTCCC---CCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHHHHH---------------cCCCCceecCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            999999987               56677777765431   36788999999999999999999999999988876543 


Q ss_pred             Ccc---hhhhhHHHHHh
Q psy13217        363 FPE---DGYSSLYKIIF  376 (422)
Q Consensus       363 ~p~---~~~~gli~~~~  376 (422)
                      .|+   ....+++.++.
T Consensus       281 ~~~~~~~~l~g~~~g~l  297 (466)
T 3nd0_A          281 LATKWKGFLLGSIIGIL  297 (466)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHH
Confidence            222   23445555554
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ... Back     alignment and structure
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Back     alignment and structure
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Back     alignment and structure
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ... Back     alignment and structure
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Back     alignment and structure
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Back     alignment and structure
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 422
d1otsa_444 f.20.1.1 (A:) Clc chloride channel {Escherichia co 6e-16
d1otsa_444 f.20.1.1 (A:) Clc chloride channel {Escherichia co 4e-06
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Length = 444 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

 Score = 77.2 bits (189), Expect = 6e-16
 Identities = 44/201 (21%), Positives = 72/201 (35%), Gaps = 22/201 (10%)

Query: 76  WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLG 135
             M  + G +VG+       GV +  + ++  L    D +P  +   +L  A    +   
Sbjct: 20  LFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSA----VLAM 75

Query: 136 IACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEG 195
               L   +A EA G  +  +   L   R  +++  R + VK       +      G EG
Sbjct: 76  FGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWW--RVLPVKFFGGLGTLGGGMVLGREG 133

Query: 196 PIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAP 255
           P + IG  +G +                   +  L     R  L   G AAG++A F AP
Sbjct: 134 PTVQIGGNIGRM----------------VLDIFRLKGDEARHTLLATGAAAGLAAAFNAP 177

Query: 256 FGGIFLALEETTTFFSAEMLP 276
             GI   +EE    F   ++ 
Sbjct: 178 LAGILFIIEEMRPQFRYTLIS 198
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Length = 444 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
d1otsa_ 444 Clc chloride channel {Escherichia coli [TaxId: 562 100.0
d1otsa_444 Clc chloride channel {Escherichia coli [TaxId: 562 99.65
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-37  Score=319.16  Aligned_cols=248  Identities=19%  Similarity=0.261  Sum_probs=204.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCC
Q psy13217         72 YVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGG  151 (422)
Q Consensus        72 ~~~~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~p~a~Gs  151 (422)
                      .+..+++++++|+++|+++.+++..++++++++++......+.. ...|..++   +.+.+.+.+++++++++.|.++|+
T Consensus        16 ~l~~~~la~liGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~l~~~~~p~~~Gs   91 (444)
T d1otsa_          16 PLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNY-PLLLTVAF---LCSAVLAMFGYFLVRKYAPEAGGS   91 (444)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH-HHHHHHHH---HHHHHHHHHHHHHHHHHCGGGSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cHHHHHHH---HHHHHHHHHHHHHHHhhCCccCCC
Confidence            45577789999999999999999999999999988754211111 11122222   456677888888889999999999


Q ss_pred             CHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHhhCCCCccccccccccccC
Q psy13217        152 NVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLN  231 (422)
Q Consensus       152 Gipei~~~l~G~~~~~~l~~~~l~~K~i~~~lsv~sG~s~GrEGP~v~iGA~ig~~l~~~~~~l~~~~~~~l~~~~~~~~  231 (422)
                      |+||+++++||.  ++.++.++.+.|++++++++++|+|+|||||++|+||++|+.++|+         +++       .
T Consensus        92 Gipev~~~l~~~--~~~~~~r~~~~k~~~~~~sl~~G~s~G~EGP~v~iga~i~~~l~~~---------~~~-------~  153 (444)
T d1otsa_          92 GIPEIEGALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDI---------FRL-------K  153 (444)
T ss_dssp             SHHHHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHH---------TTC-------C
T ss_pred             CHHHHHHHHhCC--CCCccHHHHHHHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHH---------Hhh-------h
Confidence            999999999986  4567889999999999999999999999999999999999999998         342       3


Q ss_pred             ChhhhhHHHHHhHHHhhhhhcCCchhHhHhHhhhccccccc--chHHHHHHHHHHHHHHHHHHhhhhhccccCccccccc
Q psy13217        232 SVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSA--EMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYK  309 (422)
Q Consensus       232 ~~~~~r~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~--~~l~~~~~as~iA~~v~~~l~~~~~~~~~~p~~~~~g  309 (422)
                      +++++|.+++||+|||+||+||||++|++|++|++.++++.  ..++++++++++++++.+..               .+
T Consensus       154 ~~~~~r~l~~~GaaAglaa~F~aPlaG~lFa~E~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---------------~~  218 (444)
T d1otsa_         154 GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF---------------NH  218 (444)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH---------------SC
T ss_pred             hHHhhHHHHHHHHHHHHhhccCCchhhhhhhhHHHhhcchHHHHHHHHHHhhhHHHhhheeec---------------cC
Confidence            67789999999999999999999999999999999987654  44889999999998888776               34


Q ss_pred             cccccccccccCcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q psy13217        310 LVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDA  359 (422)
Q Consensus       310 ~~p~f~i~~~~~~~~~~~~~~~~~~~lGv~~Gl~g~lF~~~l~~~~~~~~  359 (422)
                      ..+.++++...   +.+..+++.++++|++||++|.+|++.+.+.++++.
T Consensus       219 ~~~~~~~~~~~---~~~~~~~~~~~~lgi~~g~~g~~f~~~~~~~~~~~~  265 (444)
T d1otsa_         219 EVALIDVGKLS---DAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLH  265 (444)
T ss_dssp             SCCSSCCCCCC---CCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445554432   236788999999999999999999999998888654
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Back     information, alignment and structure