Psyllid ID: psy13219

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP
Secondary Structure (PSIPRED)
cccccccccccEEEccccccccEEEcHHHHHHccccHHHHHHHHHHHHcccEEEEcccccccHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHccccccccccccccccccccccHHHHHcccccccccccHHHHHHHccccccccccHHHHHHcccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEccccccccEEEccHHHcccccccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHccccccccccHHHHccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHccccEEEEccc
Coil and Loop (DISEMBL)
mmrnvcdrdsgltvlgtryrcpvgiapSAMQKLAHADGEVATARAAGMMDAIMILSLMSttsleevraqnpsttLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGsryrdlknkftmppylslanfrnlkqhnediskfrDISAEECSSGLTdyvanqfddsvdwdDVRSLVQatklpivckgip
Flexible Loop (DISEMBL)
mmrnvcdrdsgltvlgtryrCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVqatklpivckgip
Low Complexity Region (SEG)
MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP
Disordered region (IsUnstruct)
*********SGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK***
Disordered Region (DISOPRED)
MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDIS***************DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP
Disordered Region (DISEMBL)
*********SGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP
Disordered Region (DISPRO)
****VCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q9WU19	370	Hydroxyacid oxidase 1 OS=	yes	N/A	0.963	0.502	0.447	1e-41
Q9UJM8	370	Hydroxyacid oxidase 1 OS=	yes	N/A	0.963	0.502	0.421	5e-40
O49506	368	Peroxisomal (S)-2-hydroxy	no	N/A	0.943	0.494	0.432	2e-37
Q10CE4	369	Peroxisomal (S)-2-hydroxy	yes	N/A	0.943	0.493	0.458	2e-37
B8AKX6	369	Peroxisomal (S)-2-hydroxy	N/A	N/A	0.943	0.493	0.458	2e-37
Q6YT73	369	Peroxisomal (S)-2-hydroxy	no	N/A	0.943	0.493	0.447	3e-37
B8B7C5	369	Peroxisomal (S)-2-hydroxy	N/A	N/A	0.943	0.493	0.447	3e-37
Q9LRR9	367	Peroxisomal (S)-2-hydroxy	no	N/A	0.943	0.495	0.453	2e-36
P05414	369	Peroxisomal (S)-2-hydroxy	N/A	N/A	0.943	0.493	0.432	1e-35
Q9LRS0	367	Peroxisomal (S)-2-hydroxy	no	N/A	0.943	0.495	0.427	2e-34

>sp|Q9WU19|HAOX1_MOUSE Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 117/192 (60%), Gaps = 6/192 (3%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           M+RNV D D   +VLG R   P+ +  +AMQ +AH DGE+AT RA   M   M+LS  +T
Sbjct: 53  MLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWAT 112

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV    P    W+Q+YI+KDR +S Q+V+RAE+ GY AI +T+DT  LG+R  D++
Sbjct: 113 SSIEEVAEAGPEALRWMQLYIYKDREISRQIVKRAEKQGYKAIFVTVDTPYLGNRIDDVR 172

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP L + NF            F D      +SGL +YVA   D S+ WDD+  L 
Sbjct: 173 NRFKLPPQLRMKNFETNDLAFSPKGNFGD------NSGLAEYVAQAIDPSLSWDDITWLR 226

Query: 181 QATKLPIVCKGI 192
           + T LPIV KGI
Sbjct: 227 RLTSLPIVVKGI 238

Has 2-hydroxyacid oxidase activity. Most active on the 2-carbon substrate glycolate, but is also active on 2-hydroxy fatty acids, with high activity towards 2-hydroxy palmitate and 2-hydroxy octanoate.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5

>sp|Q9UJM8|HAOX1_HUMAN Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1

 Score =  163 bits (413), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 117/192 (60%), Gaps = 6/192 (3%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           M+RNV + D   +VLG R   P+ +  +AMQ++AH DGE+AT RA   +   M+LS  +T
Sbjct: 53  MLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWAT 112

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV    P    WLQ+YI+KDR ++ ++V++AE+ GY AI +T+DT  LG+R  D++
Sbjct: 113 SSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVR 172

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP L + NF            F D       SGL  YVA   D S+ W+D++ L 
Sbjct: 173 NRFKLPPQLRMKNFETSTLSFSPEENFGD------DSGLAAYVAKAIDPSISWEDIKWLR 226

Query: 181 QATKLPIVCKGI 192
           + T LPIV KGI
Sbjct: 227 RLTSLPIVAKGI 238

Has 2-hydroxyacid oxidase activity. Most active on the 2-carbon substrate glycolate, but is also active on 2-hydroxy fatty acids, with high activity towards 2-hydroxy palmitate and 2-hydroxy octanoate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1

 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 116/192 (60%), Gaps = 10/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V   D   TVLG     P+ IAP+AMQK+AH DGE+ATARA      IM LS  +T
Sbjct: 51  ILIDVSKIDVSTTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWAT 110

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
            S+EEV +  P    + Q+Y++KDR + +Q+V+RAE +G+ AI +T+DT  LG R  D+K
Sbjct: 111 CSVEEVASTGPGIRFF-QLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIK 169

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +P  L+L NF  L     D+ K    +     SGL  YVA Q D S+ W D++ L 
Sbjct: 170 NRFALPRGLTLKNFEGL-----DLGKIDKTN----DSGLASYVAGQVDQSLSWKDIKWLQ 220

Query: 181 QATKLPIVCKGI 192
             T LPI+ KG+
Sbjct: 221 SITSLPILVKGV 232

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q10CE4|GLO1_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1

 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 118/192 (61%), Gaps = 10/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V   D   TVLG +   P+ IAPSAMQK+AH DGE ATARAA     IM LS  +T
Sbjct: 52  ILIDVSKIDMSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWAT 111

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV +  P    + Q+Y++KDR +  Q+V+RAER+G+ AI +T+DT  LG R  D+K
Sbjct: 112 SSVEEVASTGPGIRFF-QLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIK 170

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PPYL+L NF  L     D S           SGL  YVA Q D ++ W DV+ L 
Sbjct: 171 NRFVLPPYLTLKNFEGLDLAEMDKSN---------DSGLASYVAGQIDRTLSWKDVKWLQ 221

Query: 181 QATKLPIVCKGI 192
             T LPI+ KG+
Sbjct: 222 SITSLPILVKGV 233

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica GN=GLO1 PE=3 SV=1

 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 118/192 (61%), Gaps = 10/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V   D   TVLG +   P+ IAPSAMQK+AH DGE ATARAA     IM LS  +T
Sbjct: 52  ILIDVSKIDMSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWAT 111

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV +  P    + Q+Y++KDR +  Q+V+RAER+G+ AI +T+DT  LG R  D+K
Sbjct: 112 SSVEEVASTGPGIRFF-QLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIK 170

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PPYL+L NF  L     D S           SGL  YVA Q D ++ W DV+ L 
Sbjct: 171 NRFVLPPYLTLKNFEGLDLAEMDKSN---------DSGLASYVAGQIDRTLSWKDVKWLQ 221

Query: 181 QATKLPIVCKGI 192
             T LPI+ KG+
Sbjct: 222 SITSLPILVKGV 233

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 119/192 (61%), Gaps = 10/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V   D   TVLG +   P+ IAPSAMQK+AH DGE ATARAA     IM LS  +T
Sbjct: 52  ILIDVSKIDMATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWAT 111

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV +  P    + Q+Y++KDR +  Q+V+RAER+G+ AI +T+DT  LG R  D+K
Sbjct: 112 SSVEEVASTGPGIRFF-QLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIK 170

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP+L+L NF  L+    D         +   SGL  YVA Q D ++ W DV+ L 
Sbjct: 171 NRFVLPPFLTLKNFEGLELGKMD---------QASDSGLASYVAGQIDRTLSWKDVKWLQ 221

Query: 181 QATKLPIVCKGI 192
             T LPI+ KG+
Sbjct: 222 TITTLPILVKGV 233

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|B8B7C5|GLO5_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. indica GN=GLO5 PE=3 SV=1

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 119/192 (61%), Gaps = 10/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V   D   TVLG +   P+ IAPSAMQK+AH DGE ATARAA     IM LS  +T
Sbjct: 52  ILIDVSKIDMATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWAT 111

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV +  P    + Q+Y++KDR +  Q+V+RAER+G+ AI +T+DT  LG R  D+K
Sbjct: 112 SSVEEVASTGPGIRFF-QLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIK 170

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP+L+L NF  L+    D         +   SGL  YVA Q D ++ W DV+ L 
Sbjct: 171 NRFVLPPFLTLKNFEGLELGKMD---------QASDSGLASYVAGQIDRTLSWKDVKWLQ 221

Query: 181 QATKLPIVCKGI 192
             T LPI+ KG+
Sbjct: 222 TITTLPILVKGV 233

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q9LRR9|GLO1_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Arabidopsis thaliana GN=GLO1 PE=1 SV=1

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 121/192 (63%), Gaps = 10/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V   D   TVLG +   P+ +AP+AMQK+AH DGE ATARAA     IM LS  +T
Sbjct: 51  ILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWAT 110

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV +  P    + Q+Y++K+R +  Q+V+RAER+G+ AI +T+DT  LG R  D+K
Sbjct: 111 SSVEEVASTGPGIRFF-QLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIK 169

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+FT+PP L+L NF  L     D+ K      E   SGL  YVA Q D ++ W DV+ L 
Sbjct: 170 NRFTLPPNLTLKNFEGL-----DLGKMD----EANDSGLASYVAGQIDRTLSWKDVQWLQ 220

Query: 181 QATKLPIVCKGI 192
             TKLPI+ KG+
Sbjct: 221 TITKLPILVKGV 232

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 119/192 (61%), Gaps = 10/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V + D   T+LG +   P+ IAP+AMQK+AH +GE ATARAA     IM LS  +T
Sbjct: 51  ILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWAT 110

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV +  P    + Q+Y++KDR +  Q+V+RAER+G+ AI +T+DT  LG R  D+K
Sbjct: 111 SSVEEVASTGPGIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 169

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP+L+L NF  +     D         +   SGL+ YVA Q D S+ W DV  L 
Sbjct: 170 NRFVLPPFLTLKNFEGIDLGKMD---------KANDSGLSSYVAGQIDRSLSWKDVAWLQ 220

Query: 181 QATKLPIVCKGI 192
             T LPI+ KG+
Sbjct: 221 TITSLPILVKGV 232

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q9LRS0|GLO2_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 OS=Arabidopsis thaliana GN=GLO2 PE=1 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 119/192 (61%), Gaps = 10/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V   D   TVLG +   P+ +AP+A QK+AH DGE ATARAA     IM LS  +T
Sbjct: 51  ILIDVNKIDMATTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWAT 110

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV +  P    + Q+Y++K+R +  Q+V+RAE++G+ AI +T+DT  LG R  D+K
Sbjct: 111 SSVEEVASTGPGIRFF-QLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIK 169

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+FT+PP L+L NF  L     D+ K      E   SGL  YVA Q D ++ W D++ L 
Sbjct: 170 NRFTLPPNLTLKNFEGL-----DLGKMD----EANDSGLASYVAGQIDRTLSWKDIQWLQ 220

Query: 181 QATKLPIVCKGI 192
             T +PI+ KG+
Sbjct: 221 TITNMPILVKGV 232

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
193693082	365	PREDICTED: hydroxyacid oxidase 1-like [A	0.943	0.498	0.479	6e-46
239788888	365	ACYPI009208 [Acyrthosiphon pisum]	0.943	0.498	0.479	7e-46
195382217	364	GJ21802 [Drosophila virilis] gi|19414462	0.932	0.494	0.470	2e-45
195427008	365	GK20637 [Drosophila willistoni] gi|19415	0.948	0.501	0.434	1e-44
195028821	364	GH20058 [Drosophila grimshawi] gi|193903	0.932	0.494	0.460	2e-44
91083635	367	PREDICTED: similar to AGAP010885-PA [Tri	0.948	0.498	0.455	2e-44
380024965	367	PREDICTED: hydroxyacid oxidase 1-like [A	0.953	0.501	0.463	4e-44
195383652	365	GJ22209 [Drosophila virilis] gi|19414533	0.937	0.495	0.465	8e-44
66508573	367	PREDICTED: hydroxyacid oxidase 1-like [A	0.953	0.501	0.458	1e-43
195382687	366	GJ21929 [Drosophila virilis] gi|19414485	0.937	0.494	0.476	2e-43

>gi|193693082|ref|XP_001948314.1| PREDICTED: hydroxyacid oxidase 1-like [Acyrthosiphon pisum]

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 128/192 (66%), Gaps = 10/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           M+R+V +RD  +T+ G +   P+GI+P AM K+AH DGE A+ARAAG   AI ILS +ST
Sbjct: 53  MLRDVRNRDLSITIQGDKVNVPIGISPCAMHKMAHEDGECASARAAGKHGAIFILSTLST 112

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
            SLEEV    P+T  W Q+YI+KDR L+  +++RAE+SGY A+V+T+D  V G RY+D+K
Sbjct: 113 CSLEEVATAAPNTVKWFQLYIYKDRVLTTSLIRRAEKSGYKALVLTVDAPVFGIRYKDIK 172

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N F++P  L L NF      +E++S    +  +   SGLT YV + FDD + WDD++ L 
Sbjct: 173 NNFSLPSRLRLGNF------SEELS----VMNQTNGSGLTKYVMSLFDDRLVWDDIKWLK 222

Query: 181 QATKLPIVCKGI 192
             T LPI+ KGI
Sbjct: 223 SITDLPIIVKGI 234

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239788888|dbj|BAH71101.1| ACYPI009208 [Acyrthosiphon pisum]

 Score =  188 bits (478), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 128/192 (66%), Gaps = 10/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           M+R+V +RD  +T+ G +   P+GI+P AM K+AH DGE A+ARAAG   AI ILS +ST
Sbjct: 53  MLRDVRNRDLSITIQGDKVNVPIGISPCAMHKMAHEDGECASARAAGKHGAIFILSTLST 112

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
            SLEEV    P+T  W Q+YI+KDR L+  +++RAE+SGY A+V+T+D  V G RY+D+K
Sbjct: 113 CSLEEVATAAPNTVKWFQLYIYKDRVLTTSLIRRAEKSGYKALVLTVDAPVFGIRYKDIK 172

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N F++P  L L NF      +E++S    +  +   SGLT YV + FDD + WDD++ L 
Sbjct: 173 NNFSLPSRLRLGNF------SEELS----VMNQTNGSGLTKYVMSLFDDRLVWDDIKWLK 222

Query: 181 QATKLPIVCKGI 192
             T LPI+ KGI
Sbjct: 223 SITDLPIIVKGI 234

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195382217|ref|XP_002049827.1| GJ21802 [Drosophila virilis] gi|194144624|gb|EDW61020.1| GJ21802 [Drosophila virilis]

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/189 (47%), Positives = 129/189 (68%), Gaps = 9/189 (4%)

Query: 4   NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSL 63
           +V   D G  + G + + P+GIAP+AMQK+AH DGE+  ARAAG   +I ILS +STTSL
Sbjct: 54  DVSQLDLGCMIFGQQLKWPLGIAPTAMQKMAHPDGEIGNARAAGKAGSIFILSTLSTTSL 113

Query: 64  EEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKF 123
           E++ A  P T  W Q+YI+KDR+L+ ++V+RAER+ + A+V+T+D  V G R  D++NKF
Sbjct: 114 EDLSAGAPDTCKWFQLYIYKDRSLTEKLVRRAERANFKALVLTVDAPVFGHRRSDVRNKF 173

Query: 124 TMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQAT 183
           ++P +LSLANFR  +Q N  ++           SG+ +YVA+QFD S+ W+D+  L Q T
Sbjct: 174 SLPQHLSLANFRG-EQANGVVTM--------GGSGINEYVASQFDASITWEDINWLKQLT 224

Query: 184 KLPIVCKGI 192
            LPI+ KG+
Sbjct: 225 HLPIIAKGV 233

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195427008|ref|XP_002061571.1| GK20637 [Drosophila willistoni] gi|194157656|gb|EDW72557.1| GK20637 [Drosophila willistoni]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 130/191 (68%), Gaps = 8/191 (4%)

Query: 2   MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
           +R+V   D G  +LG + + P+GIAP+AMQK+AH DGE+  ARAAG   +I ILS +STT
Sbjct: 52  LRDVSKLDVGCKILGEQMKWPLGIAPTAMQKMAHPDGEIGNARAAGKAGSIFILSTLSTT 111

Query: 62  SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKN 121
           SLE++ A  P T  W Q+YI+KDR+++ ++V+RAE++ + A+V+T+D  + G R  D++N
Sbjct: 112 SLEDLAAGAPDTVKWFQLYIYKDRSITEKLVRRAEKANFKALVLTIDAPIFGHRRADVRN 171

Query: 122 KFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQ 181
            F++P +L+LANF+ +K           +     +SG+ +YV++QFD ++ W D++ L  
Sbjct: 172 NFSLPSHLTLANFQGVKATG--------VVTATGASGINEYVSSQFDPTITWQDIKWLKS 223

Query: 182 ATKLPIVCKGI 192
            T+LPIV KGI
Sbjct: 224 ITQLPIVVKGI 234

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028821|ref|XP_001987274.1| GH20058 [Drosophila grimshawi] gi|193903274|gb|EDW02141.1| GH20058 [Drosophila grimshawi]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 126/189 (66%), Gaps = 9/189 (4%)

Query: 4   NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSL 63
           +V   D    +LG + + PVGIAP+AMQK+AH DGE+  ARAAG   +I ILS +STTSL
Sbjct: 54  DVSQPDISCQILGQQQKWPVGIAPTAMQKMAHPDGEIGNARAAGKAGSIFILSTLSTTSL 113

Query: 64  EEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKF 123
           E++ A  P T  W Q+YI+KDR+L+ ++V RAE++ + A+V+T+D  + G R  D++NKF
Sbjct: 114 EDLAAGAPDTHKWFQLYIYKDRSLTKKLVHRAEKANFKALVLTIDAPIFGHRRSDVRNKF 173

Query: 124 TMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQAT 183
           ++P +LSLANF+  +Q N  ++           SG+ +YV NQFD S+ W D+  L Q T
Sbjct: 174 SLPSHLSLANFQG-EQANGVVTM--------GGSGINEYVVNQFDPSITWKDINWLKQLT 224

Query: 184 KLPIVCKGI 192
            LPI+ KG+
Sbjct: 225 SLPIIVKGV 233

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083635|ref|XP_970519.1| PREDICTED: similar to AGAP010885-PA [Tribolium castaneum]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 124/191 (64%), Gaps = 8/191 (4%)

Query: 2   MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
           +RNV  RD   TVLG + + PVGI+P+AMQ++AH +GE A ARAA  M  I  LS ++T+
Sbjct: 54  LRNVAKRDLSTTVLGEKVQIPVGISPTAMQRMAHPEGECANARAAQAMGTIFTLSTIATS 113

Query: 62  SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKN 121
           S+EEV    P  T W Q+YI+ DR ++ ++V+RAE++G+ A+V+T+DT + G R  D++N
Sbjct: 114 SIEEVAQAAPYGTKWFQLYIYNDRNVTRRLVERAEKAGFKALVLTVDTPMFGLRLADIRN 173

Query: 122 KFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQ 181
           KF +PP+L  ANF           K   I+  E  SGL +YV   FD S++W D++ L  
Sbjct: 174 KFVLPPHLKFANFAG--------DKATGINQTESGSGLNNYVNRLFDQSLEWKDIKWLQS 225

Query: 182 ATKLPIVCKGI 192
            TKLPIV KG+
Sbjct: 226 FTKLPIVVKGV 236

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024965|ref|XP_003696255.1| PREDICTED: hydroxyacid oxidase 1-like [Apis florea]

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 127/192 (66%), Gaps = 8/192 (4%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
            +RNV  RD   T+LG +   P+GIAP+AMQ++AH +GE A ARAA     I ILS +ST
Sbjct: 53  FLRNVSRRDLSTTILGEKISMPLGIAPAAMQRMAHPEGECANARAAQGAGTIYILSTIST 112

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV    P+   W Q+YI+KDR +++ +V RAER+G+ A+V+T+D  + G R  D++
Sbjct: 113 SSIEEVAEAAPNAIKWFQLYIYKDRNVTINLVGRAERAGFKAVVLTVDAPLFGDRRADIR 172

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           NKF++P +L L NF+       ++S    I+  E  SGL++YV N FD S+ WDD++ L 
Sbjct: 173 NKFSLPNHLRLGNFQG------ELST--KINNAESGSGLSEYVMNLFDASLTWDDIKWLK 224

Query: 181 QATKLPIVCKGI 192
             TKLPIV KGI
Sbjct: 225 SITKLPIVLKGI 236

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195383652|ref|XP_002050540.1| GJ22209 [Drosophila virilis] gi|194145337|gb|EDW61733.1| GJ22209 [Drosophila virilis]

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 126/189 (66%), Gaps = 8/189 (4%)

Query: 4   NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSL 63
           +V   D+   +LG +   P+GIAP+AMQKLAH DGE+ TARAAG   +I ILS +ST S+
Sbjct: 54  DVSQLDTSCKILGQQLNWPLGIAPTAMQKLAHPDGELGTARAAGQAGSIFILSTLSTCSI 113

Query: 64  EEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKF 123
           EEV    P T  W Q+YI+KDR+L+ Q+V+RAE + + A+V+T+D  + G R  D +N+F
Sbjct: 114 EEVAVAAPETCKWFQLYIYKDRSLTEQLVRRAELAQFKALVLTVDLPINGDRRADARNQF 173

Query: 124 TMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQAT 183
           ++PP+L LANF++           +   ++   SGL +YVA+QFD S+ W D++ L Q T
Sbjct: 174 SLPPHLRLANFQD--------ELMQGFVSKLGGSGLNEYVASQFDPSISWQDIKWLQQLT 225

Query: 184 KLPIVCKGI 192
           +LPIV KGI
Sbjct: 226 QLPIVLKGI 234

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66508573|ref|XP_625149.1| PREDICTED: hydroxyacid oxidase 1-like [Apis mellifera]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 125/192 (65%), Gaps = 8/192 (4%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
            +RNV  RD   T+LG +   P+GIAP+AMQ++AH +GE A  RAA     I ILS +ST
Sbjct: 53  FLRNVSKRDLSTTILGEKISMPLGIAPAAMQRMAHPEGECANVRAAQGAGTIYILSTIST 112

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV    P+   W Q+YI+KDR +++ +V RAER+G+ AIV+T+D  + G R  D++
Sbjct: 113 SSIEEVAEAAPNAIKWFQLYIYKDRNVTINLVGRAERAGFKAIVLTVDAPLFGDRRADIR 172

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           NKF++P +L L NF+        +S    I+  E  SGL++YV N FD S+ WDD++ L 
Sbjct: 173 NKFSLPHHLRLGNFQG------KLST--KINNAESGSGLSEYVMNLFDASLTWDDIKWLK 224

Query: 181 QATKLPIVCKGI 192
             TKLPI+ KGI
Sbjct: 225 SITKLPIILKGI 236

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195382687|ref|XP_002050061.1| GJ21929 [Drosophila virilis] gi|194144858|gb|EDW61254.1| GJ21929 [Drosophila virilis]

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/189 (47%), Positives = 124/189 (65%), Gaps = 8/189 (4%)

Query: 4   NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSL 63
           +V   ++   +LG     P+GIAP AMQK+AH DGEV  ARAAG+   I +LS ++TTSL
Sbjct: 54  DVSQLETSCMILGHHIDLPLGIAPVAMQKMAHPDGEVGNARAAGVAGCIFVLSTLATTSL 113

Query: 64  EEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKF 123
           E+V A  P T  W Q+YI+KDRAL+  +V+RAE +G+ A+V+T+D  V G R  D++NKF
Sbjct: 114 EDVAAAAPETCKWFQLYIYKDRALTESLVRRAENAGFKALVLTVDAPVFGQRRDDVRNKF 173

Query: 124 TMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQAT 183
           ++P +LSLANF     H E  S    + +E   SGL +YV +QFD +V W D++ L   T
Sbjct: 174 SLPSHLSLANF-----HGELAS---GVVSEMGGSGLNEYVVSQFDATVTWQDIKWLKLLT 225

Query: 184 KLPIVCKGI 192
            LPIV KG+
Sbjct: 226 HLPIVVKGV 234

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
FB|FBgn0061356	400	CG18003 [Drosophila melanogast	0.953	0.46	0.434	2.3e-39
RGD|1589750	370	Hao1 "hydroxyacid oxidase (gly	0.963	0.502	0.447	3.7e-39
UNIPROTKB|E2QZ88	371	HAO1 "Uncharacterized protein"	0.963	0.501	0.447	6.1e-39
UNIPROTKB|F6XM23	370	HAO1 "Uncharacterized protein"	0.963	0.502	0.447	6.1e-39
MGI|MGI:96011	370	Hao1 "hydroxyacid oxidase 1, l	0.963	0.502	0.447	1.3e-38
UNIPROTKB|E1BRR7	369	HAO1 "Uncharacterized protein"	0.958	0.501	0.458	2.6e-38
UNIPROTKB|E1BC79	371	HAO1 "Uncharacterized protein"	0.963	0.501	0.432	5.5e-38
UNIPROTKB|I3LVF1	370	HAO1 "Uncharacterized protein"	0.963	0.502	0.437	1.5e-37
UNIPROTKB|B8AKX6	369	GLO1 "Peroxisomal (S)-2-hydrox	0.901	0.471	0.478	1.5e-37
UNIPROTKB|Q10CE4	369	GLO1 "Peroxisomal (S)-2-hydrox	0.901	0.471	0.478	1.5e-37

FB|FBgn0061356 CG18003 [Drosophila melanogaster (taxid:7227)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 83/191 (43%), Positives = 126/191 (65%)

Query:     2 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
             +R+V   D    + G + + P+GIAP+AMQK+AH DGEV  ARAAG   +I ILS +STT
Sbjct:    86 LRDVSRLDISTKIFGEQMQWPLGIAPTAMQKMAHPDGEVGNARAAGKAGSIFILSTLSTT 145

Query:    62 SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKN 121
             SLE++ A  P T  W Q+YI+KDR ++ ++V+RAE++ + A+V+T+D  + G R  D++N
Sbjct:   146 SLEDLAAGAPDTIKWFQLYIYKDRTITEKLVRRAEKANFKALVLTIDAPIFGHRRADVRN 205

Query:   122 KFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQ 181
              F++P +LSLANF+ +K            +A   +SG+ +YV++QFD ++ W D+  L  
Sbjct:   206 NFSLPSHLSLANFQGVKATGVG-------NAAMGASGINEYVSSQFDPTITWKDIAWLKG 258

Query:   182 ATKLPIVCKGI 192
              T LPIV KG+
Sbjct:   259 ITHLPIVVKGV 269

GO:0008891 "glycolate oxidase activity" evidence=ISS

GO:0010181 "FMN binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|1589750 Hao1 "hydroxyacid oxidase (glycolate oxidase) 1" [Rattus norvegicus (taxid:10116)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 86/192 (44%), Positives = 119/192 (61%)

Query:     1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
             M+RNV D D   +VLG R   P+ +  +AMQ +AH DGE+AT RA   M   M+LS  +T
Sbjct:    53 MLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWAT 112

Query:    61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
             +S+EEV    P    W+Q+YI+KDR +S Q+V+RAE+ GY AI +T+DT  LG+R+ D++
Sbjct:   113 SSIEEVAEAGPEALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPYLGNRFDDVR 172

Query:   121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
             N+F +PP L + NF            F D      +SGL +YVA   D S+ WDD++ L 
Sbjct:   173 NRFKLPPQLRMKNFETNDLAFSPKGNFGD------NSGLAEYVAQAIDPSLSWDDIKWLR 226

Query:   181 QATKLPIVCKGI 192
             + T LPIV KGI
Sbjct:   227 RLTSLPIVVKGI 238

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA;ISO

GO:0003973 "(S)-2-hydroxy-acid oxidase activity" evidence=ISO

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005777 "peroxisome" evidence=IEA;ISO

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0008891 "glycolate oxidase activity" evidence=IEA;ISO

GO:0010181 "FMN binding" evidence=IEA;ISO

GO:0046296 "glycolate catabolic process" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|E2QZ88 HAO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 86/192 (44%), Positives = 118/192 (61%)

Query:     1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
             M+RNV + D   +VLG R   P+ +  +AMQ +AH DGE+AT RA   +   M+LS  ST
Sbjct:    54 MLRNVAEIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACRSLGTGMMLSSWST 113

Query:    61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
             +S+EEV   +P    WLQ+YI+KDR ++ Q+VQRAER GY AI +T+DT  LG+R+ D++
Sbjct:   114 SSIEEVAEASPDALRWLQLYIYKDREVTKQLVQRAERKGYKAIFLTVDTPYLGNRFDDVR 173

Query:   121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
             N+F +PP L + NF            F D      +SGL  YVA   D S+ W+D++ L 
Sbjct:   174 NRFKLPPQLRMKNFETNDLAFSPKENFGD------NSGLATYVAKSIDPSISWEDIKWLR 227

Query:   181 QATKLPIVCKGI 192
               T LPIV KGI
Sbjct:   228 GLTSLPIVAKGI 239

GO:0010181 "FMN binding" evidence=IEA

GO:0008891 "glycolate oxidase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA

UNIPROTKB|F6XM23 HAO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 86/192 (44%), Positives = 118/192 (61%)

Query:     1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
             M+RNV + D   +VLG R   P+ +  +AMQ +AH DGE+AT RA   +   M+LS  ST
Sbjct:    53 MLRNVAEIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACRSLGTGMMLSSWST 112

Query:    61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
             +S+EEV   +P    WLQ+YI+KDR ++ Q+VQRAER GY AI +T+DT  LG+R+ D++
Sbjct:   113 SSIEEVAEASPDALRWLQLYIYKDREVTKQLVQRAERKGYKAIFLTVDTPYLGNRFDDVR 172

Query:   121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
             N+F +PP L + NF            F D      +SGL  YVA   D S+ W+D++ L 
Sbjct:   173 NRFKLPPQLRMKNFETNDLAFSPKENFGD------NSGLATYVAKSIDPSISWEDIKWLR 226

Query:   181 QATKLPIVCKGI 192
               T LPIV KGI
Sbjct:   227 GLTSLPIVAKGI 238

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

MGI|MGI:96011 Hao1 "hydroxyacid oxidase 1, liver" [Mus musculus (taxid:10090)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 86/192 (44%), Positives = 117/192 (60%)

Query:     1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
             M+RNV D D   +VLG R   P+ +  +AMQ +AH DGE+AT RA   M   M+LS  +T
Sbjct:    53 MLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWAT 112

Query:    61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
             +S+EEV    P    W+Q+YI+KDR +S Q+V+RAE+ GY AI +T+DT  LG+R  D++
Sbjct:   113 SSIEEVAEAGPEALRWMQLYIYKDREISRQIVKRAEKQGYKAIFVTVDTPYLGNRIDDVR 172

Query:   121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
             N+F +PP L + NF            F D      +SGL +YVA   D S+ WDD+  L 
Sbjct:   173 NRFKLPPQLRMKNFETNDLAFSPKGNFGD------NSGLAEYVAQAIDPSLSWDDITWLR 226

Query:   181 QATKLPIVCKGI 192
             + T LPIV KGI
Sbjct:   227 RLTSLPIVVKGI 238

GO:0001561 "fatty acid alpha-oxidation" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0003973 "(S)-2-hydroxy-acid oxidase activity" evidence=ISO;IDA

GO:0005102 "receptor binding" evidence=ISO

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0008891 "glycolate oxidase activity" evidence=ISO

GO:0010181 "FMN binding" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046296 "glycolate catabolic process" evidence=ISO

GO:0052852 "very-long-chain-(S)-2-hydroxy-acid oxidase activity" evidence=IEA

GO:0052853 "long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity" evidence=IEA

GO:0052854 "medium-chain-(S)-2-hydroxy-acid oxidase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IDA

UNIPROTKB|E1BRR7 HAO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 88/192 (45%), Positives = 123/192 (64%)

Query:     1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
             ++R+V   D   +VLG +   PV +A +AMQ++AH DGE ATA+A   M   M+LS  +T
Sbjct:    53 VLRDVSVMDLSTSVLGQKISMPVCVAATAMQRMAHPDGETATAKACHAMGTGMMLSSWAT 112

Query:    61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
             +S+EEV    P    WLQ+Y++KDR ++  +V+RAER+GY  I +T+DT  LG R  D++
Sbjct:   113 SSIEEVAEAAPGGLRWLQLYVYKDREVTKSLVKRAERAGYKGIFVTVDTPFLGRRIDDVR 172

Query:   121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
             NKF +PP+L L NF +   +N D S  RD   +   SGL  YVAN  D SV+W+D++ L 
Sbjct:   173 NKFQLPPHLRLKNFSS---NNLDFSG-RDFGED---SGLAVYVANAIDASVNWEDIKWLR 225

Query:   181 QATKLPIVCKGI 192
               T LPIV KGI
Sbjct:   226 GLTSLPIVAKGI 237

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0008891 "glycolate oxidase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

UNIPROTKB|E1BC79 HAO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 83/192 (43%), Positives = 117/192 (60%)

Query:     1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
             M+RN+ + D   +VLG +   P+ +  +AMQ +AH DGE+AT RA   +   M+LS  +T
Sbjct:    54 MLRNIAEIDLSTSVLGQKVSMPICVGATAMQCMAHVDGELATVRACRSLGTGMMLSSWAT 113

Query:    61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
             +S+EEV    P    WLQ+YI+KDR ++ Q+V+RAER GY AI +T+DT  LG+R+ D++
Sbjct:   114 SSIEEVAEAGPEAIRWLQLYIYKDREVTKQLVRRAERMGYKAIFVTVDTPYLGNRFDDVR 173

Query:   121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
             N+F MPP L + NF            F D       SGL  YVA   D S+ W+D++ L 
Sbjct:   174 NRFKMPPQLRMKNFETNDLAFSPKENFGD------KSGLAAYVAKAIDPSISWEDIKWLR 227

Query:   181 QATKLPIVCKGI 192
             + T LPIV KGI
Sbjct:   228 RLTSLPIVAKGI 239

GO:0010181 "FMN binding" evidence=IEA

GO:0008891 "glycolate oxidase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA

UNIPROTKB|I3LVF1 HAO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 84/192 (43%), Positives = 117/192 (60%)

Query:     1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
             M+RNV + D   +VLG R   P+ +  +AMQ +AH DGE+AT RA   +   M+LS  +T
Sbjct:    53 MLRNVAEVDLSTSVLGQRVSMPICVGATAMQCMAHEDGELATVRACRTLGTGMMLSSWAT 112

Query:    61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
             +S+EEV    P    WLQ+YI+KDR ++ Q+VQRAER GY AI +T+DT  LG+R+ D++
Sbjct:   113 SSIEEVAEAGPEALRWLQLYIYKDREVTKQLVQRAERMGYKAIFVTVDTPYLGNRFDDVR 172

Query:   121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
             N+F +P  L + NF            F D      +SGL  YVA   D S+ W+D++ L 
Sbjct:   173 NRFKLPSQLRMKNFETNDLAFSPKENFGD------NSGLAAYVAKAIDPSISWEDIKWLR 226

Query:   181 QATKLPIVCKGI 192
             + T LPIV KGI
Sbjct:   227 RLTTLPIVAKGI 238

GO:0010181 "FMN binding" evidence=IEA

GO:0008891 "glycolate oxidase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA

UNIPROTKB|B8AKX6 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Indica Group (taxid:39946)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 88/184 (47%), Positives = 119/184 (64%)

Query:     9 DSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRA 68
             D   TVLG +   P+ IAPSAMQK+AH DGE ATARAA     IM LS  +T+S+EEV +
Sbjct:    60 DMSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAS 119

Query:    69 QNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
               P    + Q+Y++KDR +  Q+V+RAER+G+ AI +T+DT  LG R  D+KN+F +PPY
Sbjct:   120 TGPGIRFF-QLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPY 178

Query:   129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
             L+L NF  L     D+++  D S +   SGL  YVA Q D ++ W DV+ L   T LPI+
Sbjct:   179 LTLKNFEGL-----DLAEM-DKSND---SGLASYVAGQIDRTLSWKDVKWLQSITSLPIL 229

Query:   189 CKGI 192
              KG+
Sbjct:   230 VKGV 233

GO:0005777 "peroxisome" evidence=ISS

GO:0008891 "glycolate oxidase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=ISS

GO:0010109 "regulation of photosynthesis" evidence=ISS

GO:0019048 "virus-host interaction" evidence=ISS

UNIPROTKB|Q10CE4 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 88/184 (47%), Positives = 119/184 (64%)

Query:     9 DSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRA 68
             D   TVLG +   P+ IAPSAMQK+AH DGE ATARAA     IM LS  +T+S+EEV +
Sbjct:    60 DMSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAS 119

Query:    69 QNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
               P    + Q+Y++KDR +  Q+V+RAER+G+ AI +T+DT  LG R  D+KN+F +PPY
Sbjct:   120 TGPGIRFF-QLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPY 178

Query:   129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
             L+L NF  L     D+++  D S +   SGL  YVA Q D ++ W DV+ L   T LPI+
Sbjct:   179 LTLKNFEGL-----DLAEM-DKSND---SGLASYVAGQIDRTLSWKDVKWLQSITSLPIL 229

Query:   189 CKGI 192
              KG+
Sbjct:   230 VKGV 233

GO:0005777 "peroxisome" evidence=IDA

GO:0008891 "glycolate oxidase activity" evidence=IDA

GO:0009853 "photorespiration" evidence=IMP

GO:0010109 "regulation of photosynthesis" evidence=IMP

GO:0019048 "virus-host interaction" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.3.2	LOW CONFIDENCE prediction!
3rd Layer	5.3.3	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	193
pfam01070	302	pfam01070, FMN_dh, FMN-dependent dehydrogenase	1e-49
PLN02979	366	PLN02979, PLN02979, glycolate oxidase	3e-48
PLN02493	367	PLN02493, PLN02493, probable peroxisomal (S)-2-hyd	2e-45
cd02809	299	cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom	2e-45
cd03332	383	cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO)	2e-44
PLN02535	364	PLN02535, PLN02535, glycolate oxidase	3e-44
cd02922	344	cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b	2e-41
COG1304	360	COG1304, idi, Isopentenyl diphosphate isomerase (B	7e-36
cd04737	351	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN	2e-27
cd04736	361	cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li	8e-25
TIGR02708	367	TIGR02708, L_lactate_ox, L-lactate oxidase	8e-24
PRK11197	381	PRK11197, lldD, L-lactate dehydrogenase; Provision	3e-18
TIGR03966	385	TIGR03966, actino_HemFlav, heme/flavin dehydrogena	1e-15

>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase

 Score =  162 bits (412), Expect = 1e-49
 Identities = 72/192 (37%), Positives = 95/192 (49%), Gaps = 52/192 (27%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++R+V DRD   T+LG R   P GIAP+ MQ LAH DGE+A ARAA       +LS +S+
Sbjct: 39  VLRDVSDRDLSTTLLGQRLSLPFGIAPTGMQGLAHPDGELALARAAAAAGIPFVLSTVSS 98

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           TSLEEV A      LW Q+Y+ KDR L+  +++RAE +GY A+V+T+DT VLG+R RDL+
Sbjct: 99  TSLEEVAAAAG-GPLWFQLYVPKDRELTEDLLERAEAAGYKALVLTVDTPVLGNRERDLR 157

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
                                                               WDD+  L 
Sbjct: 158 ---------------------------------------------------TWDDLAWLR 166

Query: 181 QATKLPIVCKGI 192
              K P+V KGI
Sbjct: 167 DQWKGPLVVKGI 178

Length = 302

>gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase

 Score =  160 bits (406), Expect = 3e-48
 Identities = 87/189 (46%), Positives = 119/189 (62%), Gaps = 10/189 (5%)

Query: 4   NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSL 63
           +V   D   TVLG +   P+ +AP+AMQK+AH DGE ATARAA     IM LS  +T+S+
Sbjct: 53  DVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSV 112

Query: 64  EEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKF 123
           EEV +  P    + Q+Y++K+R +  Q+V+RAER+G+ AI +T+DT  LG R  D+KN+F
Sbjct: 113 EEVASTGPGIRFF-QLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRF 171

Query: 124 TMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQAT 183
           T+PP L+L NF  L     D+ K      E   SGL  YVA Q D ++ W DV+ L   T
Sbjct: 172 TLPPNLTLKNFEGL-----DLGKMD----EANDSGLASYVAGQIDRTLSWKDVQWLQTIT 222

Query: 184 KLPIVCKGI 192
           KLPI+ KG+
Sbjct: 223 KLPILVKGV 231

Length = 366

>gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase

 Score =  153 bits (387), Expect = 2e-45
 Identities = 86/184 (46%), Positives = 117/184 (63%), Gaps = 10/184 (5%)

Query: 9   DSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRA 68
           D   TVLG +   P+ +AP+AMQK+AH DGE ATARAA     IM LS  +T+S+EEV +
Sbjct: 59  DMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAS 118

Query: 69  QNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
             P    + Q+Y++K+R +  Q+V+RAER+G+ AI +T+DT  LG R  D+KN+FT+PP 
Sbjct: 119 TGPGIRFF-QLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPN 177

Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
           L+L NF  L     D+ K      E   SGL  YVA Q D ++ W DV+ L   TKLPI+
Sbjct: 178 LTLKNFEGL-----DLGKMD----EANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPIL 228

Query: 189 CKGI 192
            KG+
Sbjct: 229 VKGV 232

Length = 367

>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

 Score =  151 bits (383), Expect = 2e-45
 Identities = 56/115 (48%), Positives = 78/115 (67%), Gaps = 1/115 (0%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++R+V  RD+  T+LG +   P GIAP+ +Q LAH DGE+ATARAA        LS +ST
Sbjct: 45  VLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVST 104

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSR 115
           TSLEEV A  P    W Q+Y+ +DR ++  +++RAE +GY A+V+T+DT VLG R
Sbjct: 105 TSLEEVAAAAP-GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR 158

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299

>gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain

 Score =  150 bits (382), Expect = 2e-44
 Identities = 70/205 (34%), Positives = 105/205 (51%), Gaps = 22/205 (10%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           M+R V +RD  + + G     P+ +AP  +Q+L H D E+ATARAA  +    ILS  S+
Sbjct: 66  MLRGVTERDLSVELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASS 125

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+E+V A       W Q+Y  KD  L+  +++RAE++GY  +V+T+DT  LG R RDL 
Sbjct: 126 SSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLD 185

Query: 121 NKFTMPPYL---SLAN------FRNL--KQHNEDISKFRDI--SAEECSSGLTDYVANQF 167
             +   P+L    +AN      FR    +   ED      +  +     S  +       
Sbjct: 186 LGYL--PFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGP----- 238

Query: 168 DDSVDWDDVRSLVQATKLPIVCKGI 192
             S+ W+D+  L + T LPIV KGI
Sbjct: 239 --SLTWEDLAFLREWTDLPIVLKGI 261

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. Length = 383

>gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase

 Score =  149 bits (379), Expect = 3e-44
 Identities = 77/184 (41%), Positives = 113/184 (61%), Gaps = 13/184 (7%)

Query: 9   DSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRA 68
           D   T+LG     P+ IAP+AM KLAH +GE+ATARAA   + IM+LS M++ ++EEV A
Sbjct: 61  DMSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEV-A 119

Query: 69  QNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
            + +   +LQ+Y++K R ++ Q+VQRAE++GY AIV+T D   LG R  D+KNK   P  
Sbjct: 120 SSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISP-- 177

Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
             L NF  L      +S   ++ +++  SGL  + +  FD S+ W D+  L   T LPI+
Sbjct: 178 -QLKNFEGL------LST--EVVSDK-GSGLEAFASETFDASLSWKDIEWLRSITNLPIL 227

Query: 189 CKGI 192
            KG+
Sbjct: 228 IKGV 231

Length = 364

>gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain

 Score =  141 bits (359), Expect = 2e-41
 Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 17/192 (8%)

Query: 2   MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
           +R+V   D+  T+LG +   P  I+P+A+ KLAH DGE+  ARAAG    + ++S  ++ 
Sbjct: 46  LRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASC 105

Query: 62  SLEE-VRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           SLEE V A+ P   L+ Q+Y+ KDR  + ++++RAE+ G  AI +T+D  VLG R RD +
Sbjct: 106 SLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDER 165

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
                           LK              +    G    ++   D ++ WDD++ L 
Sbjct: 166 ----------------LKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLR 209

Query: 181 QATKLPIVCKGI 192
           + TKLPIV KG+
Sbjct: 210 KHTKLPIVLKGV 221

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. Length = 344

>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

 Score =  128 bits (323), Expect = 7e-36
 Identities = 59/192 (30%), Positives = 87/192 (45%), Gaps = 10/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++  V D D   T LG +   P+ IAP     LAH +GEV  A+ A       ILS + +
Sbjct: 45  VLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGS 104

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
             +EEV A  P      Q+Y  KDR  +  +V RA  +G   +V+T+D+ V G R RD  
Sbjct: 105 QRIEEVAAAPP-----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAV 159

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N  + P    LA   N+ Q  E      D   +     + +YV+      +  +D   + 
Sbjct: 160 NGISAPA---LAIHLNVLQ--EATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGIS 214

Query: 181 QATKLPIVCKGI 192
           +    P+V KGI
Sbjct: 215 KEWAGPLVLKGI 226

Length = 360

>gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain

 Score =  105 bits (263), Expect = 2e-27
 Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 15/191 (7%)

Query: 2   MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
           ++ V   D+   +LG + + P+ +AP A   LAHA GEVATAR    + ++  +S  S T
Sbjct: 54  LQGVESPDTSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNT 113

Query: 62  SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKN 121
           SLEE+   +     W Q+Y+ KD   +  ++ RA+ +G  AI++T D  V G+R  D++N
Sbjct: 114 SLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRN 173

Query: 122 KFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQ 181
           KF  P    + N                        G+   +       +   D+  + +
Sbjct: 174 KFQFP--FGMPNLN------------HFSEGTGKGKGI-SEIYAAAKQKLSPADIEFIAK 218

Query: 182 ATKLPIVCKGI 192
            + LP++ KGI
Sbjct: 219 ISGLPVIVKGI 229

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 351

>gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain

 Score = 98.8 bits (246), Expect = 8e-25
 Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 28/207 (13%)

Query: 4   NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSL 63
           +V  RD   ++ G  +  P+ IAP+ +      +G++A ARAA       +LS  S  S+
Sbjct: 48  DVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSI 107

Query: 64  EEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKF 123
           E+V A+     LW Q+Y+   R L+  +V+RA  +GY+ +V+T D AV G R RDL+N F
Sbjct: 108 EDV-ARQADGDLWFQLYVVH-RELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGF 165

Query: 124 TMP--------------PYLSLANFRN----LKQHNEDISKFRDISAEECSSGLTDYVAN 165
            +P              P   L   RN    L     D     D    E  + L   ++ 
Sbjct: 166 AIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASD-----DAIDVEVQAAL---MSR 217

Query: 166 QFDDSVDWDDVRSLVQATKLPIVCKGI 192
           Q D S +W D+R L       ++ KGI
Sbjct: 218 QMDASFNWQDLRWLRDLWPHKLLVKGI 244

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 361

>gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase

 Score = 96.1 bits (239), Expect = 8e-24
 Identities = 43/126 (34%), Positives = 66/126 (52%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++++V +  + +  LG + + P  +AP A  KLA+  GEVATAR      +I   S  ST
Sbjct: 61  LLQDVENPSTEIEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYST 120

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
             L E+      T  W Q Y+ KD  ++  ++ R +  G  AIV+T D  V G+R  D++
Sbjct: 121 ADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVR 180

Query: 121 NKFTMP 126
           N F  P
Sbjct: 181 NGFVFP 186

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence [Energy metabolism, Other]. Length = 367

>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 31/212 (14%)

Query: 2   MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
           ++++ D     T+ G +   PV +AP  +  +    GEV  ARAA        LS +S  
Sbjct: 52  LKDMSDLSLETTLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVC 111

Query: 62  SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKN 121
            +EEV        +W Q+Y+ +DR      ++RA+ +G S +V T+D  V G+RYRD  +
Sbjct: 112 PIEEVAPAI-KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHS 170

Query: 122 KFTMPPYLSLANFRNLKQ-----------------HN-EDISKFRDISAEECSSGLTDYV 163
             + P     A  R   Q                 H+  +IS +         +GL DY+
Sbjct: 171 GMSGPN----AAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLG-----KPTGLEDYI 221

Query: 164 A---NQFDDSVDWDDVRSLVQATKLPIVCKGI 192
               N FD S+ W D+  +      P+V KGI
Sbjct: 222 GWLGNNFDPSISWKDLEWIRDFWDGPMVIKGI 253

Length = 381

>gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 3/102 (2%)

Query: 7   DRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV 66
            R+   TV+G     PV I+P+ +Q + H DGEVA ARAA      M LS  ++  +EEV
Sbjct: 59  KRELSTTVMGQEISFPVLISPTGVQAV-HPDGEVAVARAAAARGTAMGLSSFASKPVEEV 117

Query: 67  RAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 108
            A NP T  + Q+Y    R   L  ++RA  +G   +++T+D
Sbjct: 118 VAANPKT--FFQIYWVGSRDDILARLERARAAGAKGLILTLD 157

Members of this protein family possess an N-terminal heme-binding domain and C-terminal flavodehydrogenase domain, and share homology to yeast flavocytochrome b2, to E. coli L-lactate dehydrogenase [cytochrome], to (S)-mandelate dehydrogenase, etc. This enzyme appears only in the context of the mycofactocin system. Interestingly, it is absent from the four species detected so far with mycofactocin but without an F420 biosynthesis system. Length = 385

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
KOG0538|consensus	363		100.0
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	100.0
PLN02979	366	glycolate oxidase	100.0
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	100.0
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	100.0
PLN02535	364	glycolate oxidase	100.0
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	100.0
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	100.0
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	100.0
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	100.0
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	100.0
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	100.0
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	99.93
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	99.32
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	99.31
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	99.21
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	98.46
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	98.0
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	96.99
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	96.97
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	96.88
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	96.86
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	96.73
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	96.7
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	96.7
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	96.39
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	96.09
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	96.07
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	96.02
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	95.94
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	95.72
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	95.65
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	95.59
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	95.11
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	94.04
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	93.22
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	92.93
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	90.28
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	90.05
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	87.79
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	87.18
PRK06806	281	fructose-bisphosphate aldolase; Provisional	86.83
PF08029	75	HisG_C: HisG, C-terminal domain; InterPro: IPR0131	85.48
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	85.35
KOG2335|consensus	358		85.15
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	83.94
TIGR03455	100	HisG_C-term ATP phosphoribosyltransferase, C-termi	83.31
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	82.87
cd08585	237	GDPD_like_3 Glycerophosphodiester phosphodiesteras	82.17
PRK00208	250	thiG thiazole synthase; Reviewed	82.1
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	81.63
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	81.39
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	81.27

>KOG0538|consensus

Probab=100.00  E-value=2.5e-63  Score=422.42  Aligned_cols=184  Identities=47%  Similarity=0.787  Sum_probs=171.8

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+||+.+|+||++||+++++||+|||||+|+|+|||||.++||||+++|++|++||+|++|+|||++++|.+.+|||||
T Consensus        49 ~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLY  128 (363)
T KOG0538|consen   49 ILRDVSKIDTSTTVLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLY  128 (363)
T ss_pred             hheecccccccceeccccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +++||+++++|++|||++||||||||||+|++|+|+.|+||+|++|.+++++|+.......        ..+ .+.++..
T Consensus       129 vykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~--------v~~-~~~sg~~  199 (363)
T KOG0538|consen  129 VYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTE--------VEE-AGDSGLA  199 (363)
T ss_pred             ecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCccccccccccccccc--------CCc-ccchhhh
Confidence            9999999999999999999999999999999999999999999999999999987543211        111 2467788


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      .+...++|++++|+||+|||++|+||||||||.
T Consensus       200 ~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGil  232 (363)
T KOG0538|consen  200 AYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVL  232 (363)
T ss_pred             hhhhcCCCCCCChhhhHHHHhcCcCCeEEEeec
Confidence            899999999999999999999999999999985

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=100.00  E-value=2.7e-57  Score=400.04  Aligned_cols=183  Identities=46%  Similarity=0.726  Sum_probs=162.5

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      ||+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|++|++||+||+|+|||+++. +++.|||||
T Consensus        51 vLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~-~~~~wfQlY  129 (367)
T PLN02493         51 ILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTG-PGIRFFQLY  129 (367)
T ss_pred             cccCCCCCCCceEECCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcC-CCCcEEEEe
Confidence            6999999999999999999999999999999999999999999999999999999999999999999874 468999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +++||+++++||+|||+|||+|||||||+|+.|+||+|+||+|.+|.+++++++.......        . ......+..
T Consensus       130 ~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~--------~-~~~~~~~~~  200 (367)
T PLN02493        130 VYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGK--------M-DEANDSGLA  200 (367)
T ss_pred             ecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccC--------C-CcccchhHH
Confidence            9999999999999999999999999999999999999999999999888777653311000        0 001123455


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      .++..++++++||+||+|||+.|++|||||||+
T Consensus       201 ~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~  233 (367)
T PLN02493        201 SYVAGQIDRTLSWKDVQWLQTITKLPILVKGVL  233 (367)
T ss_pred             HHHhhcCCCCCCHHHHHHHHhccCCCEEeecCC
Confidence            577778899999999999999999999999995

>PLN02979 glycolate oxidase

Probab=100.00  E-value=5.4e-57  Score=396.24  Aligned_cols=183  Identities=46%  Similarity=0.726  Sum_probs=163.1

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+||+++||+|++||+++++||+|||+|+++|+|||||+++||||+++|++|++||+|++|+|||+++. +++.|||||
T Consensus        50 vLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~-~~~~wfQLY  128 (366)
T PLN02979         50 ILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTG-PGIRFFQLY  128 (366)
T ss_pred             cccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhcc-CCCeEEEEe
Confidence            6899999999999999999999999999999999999999999999999999999999999999999874 468999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +++||+.+++||+|||+|||+||+||||+|+.|+||+|+||+|++|++++++++.......        . ......+..
T Consensus       129 ~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~--------~-~~~~~~~~~  199 (366)
T PLN02979        129 VYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGK--------M-DEANDSGLA  199 (366)
T ss_pred             ecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccC--------C-CcccchhHH
Confidence            9999999999999999999999999999999999999999999999888777764321100        0 001223455


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      .+....+++++||+||+|||+.|++|||||||+
T Consensus       200 ~~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~  232 (366)
T PLN02979        200 SYVAGQIDRTLSWKDVQWLQTITKLPILVKGVL  232 (366)
T ss_pred             HHHhhcCCCCCCHHHHHHHHhccCCCEEeecCC
Confidence            577778899999999999999999999999985

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=5.5e-56  Score=393.61  Aligned_cols=191  Identities=28%  Similarity=0.499  Sum_probs=163.7

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+||+++||+|+|||+++++||+|||+|+++++||+||+++||||+++|++|++||.|++|+|||+++. +++.|||||
T Consensus        51 ~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~-~~~~wfQlY  129 (381)
T PRK11197         51 VLKDMSDLSLETTLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAI-KRPMWFQLY  129 (381)
T ss_pred             cccCCCCCCCceEECCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhcc-CCCeEEEEE
Confidence            6899999999999999999999999999999999999999999999999999999999999999999874 468999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcc---------cchhhcccc
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNE---------DISKFRDIS  151 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~---------~~~~~~~~~  151 (193)
                      +++||+.++++|+|||+|||+|||||||+|+.|+||+|+||+|++|+. +++++.+...+|.         +.+.+.|..
T Consensus       130 ~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~  208 (381)
T PRK11197        130 VLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNIS  208 (381)
T ss_pred             ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccc
Confidence            999999999999999999999999999999999999999999999863 6666554333331         112233321


Q ss_pred             c----ccCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        152 A----EECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       152 ~----~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      .    ..+......+....+++++|||||+|||+.|++|||+|||+
T Consensus       209 ~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~  254 (381)
T PRK11197        209 AYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGIL  254 (381)
T ss_pred             cccccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence            1    01122234466778899999999999999999999999984

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=100.00  E-value=6.9e-56  Score=390.62  Aligned_cols=191  Identities=29%  Similarity=0.473  Sum_probs=166.2

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      ||+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|++|++||+|++|+|||+++.+ ++.|||||
T Consensus        45 vLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~-~~~wfQLY  123 (361)
T cd04736          45 RLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVARQAD-GDLWFQLY  123 (361)
T ss_pred             ccCCCCCCCCceeECCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcC-CCeEEEEE
Confidence            69999999999999999999999999999999999999999999999999999999999999999998854 68999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcc--------cchhhccccc
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNE--------DISKFRDISA  152 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~  152 (193)
                      ++ ||+++++||+|||+|||+|||||||+|+.|+||+|+||+|.+|++++++++.+...+|.        +.+.+.|...
T Consensus       124 ~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~  202 (361)
T cd04736         124 VV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFAS  202 (361)
T ss_pred             ec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhccccccccccccc
Confidence            97 59999999999999999999999999999999999999999999999888776655541        1222322211


Q ss_pred             c--cCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        153 E--ECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       153 ~--~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      .  ....+...++...++++++|++|+|||+.|++|+|+|||+
T Consensus       203 ~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV~  245 (361)
T cd04736         203 DDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGIV  245 (361)
T ss_pred             ccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecCC
Confidence            0  1112244566667899999999999999999999999985

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PLN02535 glycolate oxidase

Probab=100.00  E-value=1.2e-54  Score=383.29  Aligned_cols=180  Identities=42%  Similarity=0.709  Sum_probs=158.2

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|++|++||+|++|+|||+++. +++.|||||
T Consensus        53 ~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~-~~~~wfQlY  131 (364)
T PLN02535         53 VLVDVSKIDMSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSC-NAVRFLQLY  131 (364)
T ss_pred             cccCCCCCCCceEECCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcC-CCCeEEEEe
Confidence            6999999999999999999999999999999999999999999999999999999999999999999874 578999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +++||++++++|+|||+|||+|||||||+|+.|+||+|+||+|.+|.   .+++.......        ... ....+..
T Consensus       132 ~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~---~~~~~~~~~~~--------~~~-~~~~~~~  199 (364)
T PLN02535        132 VYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQ---LKNFEGLLSTE--------VVS-DKGSGLE  199 (364)
T ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcc---hhhHhhhhccC--------CCc-cccccHH
Confidence            99999999999999999999999999999999999999999999883   33432211110        000 1223455


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      .+....+++++||+||+|||+.|++||+||||.
T Consensus       200 ~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~  232 (364)
T PLN02535        200 AFASETFDASLSWKDIEWLRSITNLPILIKGVL  232 (364)
T ss_pred             HHHHhccCCCCCHHHHHHHHhccCCCEEEecCC
Confidence            677778899999999999999999999999984

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=100.00  E-value=1.8e-53  Score=378.03  Aligned_cols=189  Identities=35%  Similarity=0.541  Sum_probs=156.1

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+||+++||+|+|||+++++||+|||+|+++++||+||+++||||+++|++|++||.|++|+|||+++.++++.|||||
T Consensus        66 vL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY  145 (383)
T cd03332          66 MLRGVTERDLSVELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLY  145 (383)
T ss_pred             ccccCCCCCCceeeCCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEee
Confidence            68999999999999999999999999999999999999999999999999999999999999999998866678999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCc--cchhhhhccccCcccchhhccc--ccc---
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY--LSLANFRNLKQHNEDISKFRDI--SAE---  153 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~--~~~---  153 (193)
                      +++||++++++|+|||+|||+|||||||+|+.|+||+|+||+| .|..  .++.++..   .|.....+.+.  ...   
T Consensus       146 ~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~-~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  221 (383)
T cd03332         146 WPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGY-LPFLRGIGIANYFS---DPVFRKKLAEPVGEDPEAP  221 (383)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCC-CCCccccchhhhhc---cchhhhccccCCCCCcccc
Confidence            9999999999999999999999999999999999999999999 4532  22222111   11000001000  000   


Q ss_pred             -cCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        154 -ECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       154 -~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                       ........+...++++++||++|+|||+.|++|||+|||+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV~  262 (383)
T cd03332         222 PPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGIL  262 (383)
T ss_pred             cccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecCC
Confidence             0112334455566799999999999999999999999985

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=100.00  E-value=9.3e-53  Score=371.45  Aligned_cols=177  Identities=28%  Similarity=0.463  Sum_probs=153.0

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+||+++||+|+|||+++++||+|||+|+++|+||+||+++||||+++|++|++||.|++|+|||+++.++++.|||||
T Consensus        61 ~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY  140 (367)
T TIGR02708        61 LLQDVENPSTEIEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFY  140 (367)
T ss_pred             cccCCCCCCCceeeCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999998755678999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +++||++++++|+|||++||+|||||||+|+.|+||+|+||+|.+|..+...+  .....+            . .... 
T Consensus       141 ~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~--~~~~~~------------~-~~~~-  204 (367)
T TIGR02708       141 MSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQ--EYLPTG------------A-GKSM-  204 (367)
T ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhh--hhcccC------------C-ccch-
Confidence            99999999999999999999999999999999999999999999885443322  110000            0 0000 


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      ..+....++.++|++|+|||+.|++||+||||+
T Consensus       205 ~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~  237 (367)
T TIGR02708       205 DNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQ  237 (367)
T ss_pred             hhhccccCCCCCHHHHHHHHHhcCCCEEEeCCC
Confidence            111223468999999999999999999999985

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=100.00  E-value=1.3e-50  Score=356.68  Aligned_cols=178  Identities=30%  Similarity=0.493  Sum_probs=154.9

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      ||+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|++|++|+.|++|+|||+++.++++.|||||
T Consensus        53 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY  132 (351)
T cd04737          53 VLQGVESPDTSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLY  132 (351)
T ss_pred             hccCCCCCCCceEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999998865679999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +++|+++++++|+|||++||++|+||||+|+.|+||+|+||+|.+|..++..+...... +             ...+..
T Consensus       133 ~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~-~-------------~~~~~~  198 (351)
T cd04737         133 MSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGT-G-------------KGKGIS  198 (351)
T ss_pred             ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhcccc-c-------------cCcchh
Confidence            99999999999999999999999999999999999999999999986655433221100 0             000111


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                       .....+++++||++|+|||+.|++||++|||.
T Consensus       199 -~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~  230 (351)
T cd04737         199 -EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQ  230 (351)
T ss_pred             -hhhhhccCCCCHHHHHHHHHHhCCcEEEecCC
Confidence             11234678899999999999999999999984

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=100.00  E-value=6.4e-50  Score=353.38  Aligned_cols=192  Identities=38%  Similarity=0.607  Sum_probs=166.2

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+|++++||+|+|||+++++||+|||+|+++++||++|.++||||+++|++|++||.++.++|||+++.+ ++.|||||
T Consensus        39 vL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~e~ia~~~~-~~~~~Qly  117 (356)
T PF01070_consen   39 VLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSASLEEIAAASG-GPLWFQLY  117 (356)
T ss_dssp             SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCHHHHHHHCT-SEEEEEEE
T ss_pred             ccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCCHHHHHhhcc-CCeEEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999876 78999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcc-cchhhccc---ccccCC
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNE-DISKFRDI---SAEECS  156 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~  156 (193)
                      +++|++.+.++++|||++||+||+||||+|+.|+||+|.||+|++|++++.+++.+...+|. ..+.+.+.   ......
T Consensus       118 ~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  197 (356)
T PF01070_consen  118 PPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNG  197 (356)
T ss_dssp             GBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTST
T ss_pred             EecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcc
Confidence            99999999999999999999999999999999999999999999999999999887776652 12222221   111223


Q ss_pred             cchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        157 SGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       157 ~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      .....+....+++.++|++|+|||+.|++|||||||+
T Consensus       198 ~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~  234 (356)
T PF01070_consen  198 AAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVL  234 (356)
T ss_dssp             CHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-
T ss_pred             hhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecc
Confidence            3445677778899999999999999999999999984

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=100.00  E-value=7.1e-49  Score=345.21  Aligned_cols=177  Identities=36%  Similarity=0.545  Sum_probs=157.4

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhh-CCCCceEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ-NPSTTLWLQM   79 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~-~~~~~~wfQl   79 (193)
                      +|+|++++||+|++||+++++||+|||||+++++||+||+++||||+++|++|++||++++|+|||+++ .++++.||||
T Consensus        45 ~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Ql  124 (344)
T cd02922          45 VLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQL  124 (344)
T ss_pred             ccCCCCCCCCceEECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999887 4567999999


Q ss_pred             EeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcch
Q psy13219         80 YIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGL  159 (193)
Q Consensus        80 Y~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (193)
                      |+++|++.++++++|||++||+||+||||+|+.|+||+|+||+|.+|.+++.++....                ....+.
T Consensus       125 y~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~----------------~~~~~~  188 (344)
T cd02922         125 YVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTK----------------AKGGGA  188 (344)
T ss_pred             eecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccc----------------cccchH
Confidence            9999999999999999999999999999999999999999999999876655442110                011123


Q ss_pred             hhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        160 TDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       160 ~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      ..++...+++..+|++|+|||+.|++||+||||.
T Consensus       189 ~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~  222 (344)
T cd02922         189 GRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQ  222 (344)
T ss_pred             HHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCC
Confidence            3355556789999999999999999999999984

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=100.00  E-value=4.3e-38  Score=277.75  Aligned_cols=183  Identities=30%  Similarity=0.401  Sum_probs=163.5

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|.+++++|++|++||+++++||+||||++++|+|++||...|++|.++|+++++|+.+|+++||+.+..+     ||+|
T Consensus        45 ~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~-----~q~y  119 (360)
T COG1304          45 VLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP-----FQLY  119 (360)
T ss_pred             cCCCcccCccceEecCccccCCEEEeccccccccChhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc-----hhhh
Confidence            58899999999999999999999999999999999999999999999999999999999999999987643     9999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +.+||+.+.++++||+++||++|++|||+|+.|+|++|.+|++..|+.....|+.+....|.+...+..     ....+.
T Consensus       120 ~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~-----~~~~i~  194 (360)
T COG1304         120 FSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNVLQEATQPEGDRDGKG-----GLDSIA  194 (360)
T ss_pred             hHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHHHHHHhccCCCcccccccHHHHhcCCcccccccc-----hhhHHH
Confidence            999999999999999999999999999999999999999999999988888888876665521111110     111456


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      .+.+...+|.++|||++||++.|.+|+++|||+
T Consensus       195 ~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~  227 (360)
T COG1304         195 EYVSALSVPVISKEDGAGISKEWAGPLVLKGIL  227 (360)
T ss_pred             HHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCC
Confidence            677788899999999999999999999999996

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=99.93  E-value=1.7e-25  Score=193.51  Aligned_cols=136  Identities=48%  Similarity=0.780  Sum_probs=126.2

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|++++++||+|++||++++.||+||||++.++.|+++|.++|++|.++|+++++|++++.++|++.+..+ ++.|+|||
T Consensus        45 ~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~-~~~~~ql~  123 (299)
T cd02809          45 VLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAP-GPRWFQLY  123 (299)
T ss_pred             cCCCCCCCCCceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcC-CCeEEEEe
Confidence            47889999999999999999999999999998899999999999999999999999999999999998766 78999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      ...|++.+.++++++++.|+++|.+++|+|..|.|                                             
T Consensus       124 ~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~---------------------------------------------  158 (299)
T cd02809         124 VPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR---------------------------------------------  158 (299)
T ss_pred             ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC---------------------------------------------
Confidence            99899999999999999999999999999854333                                             


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGI  192 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI  192 (193)
                                .+|+.|+|+++.|++|+++|+|
T Consensus       159 ----------~~~~~i~~l~~~~~~pvivK~v  180 (299)
T cd02809         159 ----------LTWDDLAWLRSQWKGPLILKGI  180 (299)
T ss_pred             ----------CCHHHHHHHHHhcCCCEEEeec
Confidence                      3688999999999999999986

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=99.32  E-value=1.1e-11  Score=110.00  Aligned_cols=105  Identities=17%  Similarity=0.127  Sum_probs=70.7

Q ss_pred             CCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCcc--------ccHHHHHhhCCCCce
Q psy13219          4 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST--------TSLEEVRAQNPSTTL   75 (193)
Q Consensus         4 dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss--------~s~eei~~~~~~~~~   75 (193)
                      +++++||+|+|||++++.||+|+||++..---.+-..++|++|.++|+++++++++.        .+++.+.+..|+.+.
T Consensus        44 ~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~~~~~~~vr~~~p~~p~  123 (352)
T PRK05437         44 DLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPELADSFSVVRKVAPDGLL  123 (352)
T ss_pred             ChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChhhHHHHHHHHHHCCCceE
Confidence            678999999999999999999999864321111234799999999999999999862        344555665666654


Q ss_pred             EEEEEeecCHHH-HHHHHHHHHHcCCcEEEEeec
Q psy13219         76 WLQMYIFKDRAL-SLQMVQRAERSGYSAIVITMD  108 (193)
Q Consensus        76 wfQlY~~~dr~~-~~~ll~RAe~AG~~AlvvTVD  108 (193)
                      +--|........ .+.+.+.++.+++.|+-|.+.
T Consensus       124 ~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~  157 (352)
T PRK05437        124 FANLGAVQLYGYGVEEAQRAVEMIEADALQIHLN  157 (352)
T ss_pred             EeecCccccCCCCHHHHHHHHHhcCCCcEEEeCc
Confidence            443333222111 123334445667788877653

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=99.31  E-value=1.8e-11  Score=107.37  Aligned_cols=99  Identities=20%  Similarity=0.194  Sum_probs=69.4

Q ss_pred             CCCCCCCcceECCceeCCceeecchhccccCCchH---HHHHHHHHhccCceeeeccCcc--------ccHHHHHhhCCC
Q psy13219          4 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADG---EVATARAAGMMDAIMILSLMST--------TSLEEVRAQNPS   72 (193)
Q Consensus         4 dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~g---E~~~araA~~~g~~~~lst~ss--------~s~eei~~~~~~   72 (193)
                      +++++||+|+|||++++.||+++||++.   +...   ..++|++|.++|++|++++.+.        .+++.+.+..++
T Consensus        36 ~~~~id~s~~~~G~~l~~Pi~ia~mtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~~~~~~vr~~~~~  112 (326)
T cd02811          36 DLDDIDLSTEFLGKRLSAPLLISAMTGG---SEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPELAESFTVVREAPPN  112 (326)
T ss_pred             CcccCCCeeEECCceecCCEEEeCCCCC---ChHHHHHHHHHHHHHHHcCCCeEecCchhhccChhhhhHHHHHHHhCCC
Confidence            7889999999999999999999999753   3333   4799999999999999999853        344555555554


Q ss_pred             CceEEEEEeec----CHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219         73 TTLWLQMYIFK----DRALSLQMVQRAERSGYSAIVITMD  108 (193)
Q Consensus        73 ~~~wfQlY~~~----dr~~~~~ll~RAe~AG~~AlvvTVD  108 (193)
                      .+..--+-...    +.+...+.+   +.+++.|+-|.++
T Consensus       113 ~p~~~Nl~~~~~~~~~~~~~~~~i---~~~~adalel~l~  149 (326)
T cd02811         113 GPLIANLGAVQLNGYGVEEARRAV---EMIEADALAIHLN  149 (326)
T ss_pred             ceEEeecCccccCCCCHHHHHHHH---HhcCCCcEEEeCc
Confidence            44322222222    444443333   4567888888765

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=99.21  E-value=1.3e-10  Score=102.27  Aligned_cols=103  Identities=19%  Similarity=0.159  Sum_probs=67.1

Q ss_pred             cCCCCCCCcceECCceeCCceeecchhccccCCchH---HHHHHHHHhccCceeeeccCcc--------ccHHHHHhhCC
Q psy13219          3 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADG---EVATARAAGMMDAIMILSLMST--------TSLEEVRAQNP   71 (193)
Q Consensus         3 ~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~g---E~~~araA~~~g~~~~lst~ss--------~s~eei~~~~~   71 (193)
                      .|++++||+|+|||++++.||+++||++.   ++.+   ...+|++|.++|+++++++.+.        .+.+.+.+..+
T Consensus        36 ~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~~~~~~vr~~~~  112 (333)
T TIGR02151        36 INLDDIDLTTEFLGKRLKAPFYINAMTGG---SEEAGKINRNLARAARELGIPMGVGSQRAALKDPETADTFEVVREEAP  112 (333)
T ss_pred             CCcccCCCceEECCccccCCEEEeCCCCC---chhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhHhHHHHHHHhCC
Confidence            46789999999999999999999998643   2333   4699999999999999998862        13344455445


Q ss_pred             CCceEEEEEeecCHH-HHHHHHHHHHHcCCcEEEEeec
Q psy13219         72 STTLWLQMYIFKDRA-LSLQMVQRAERSGYSAIVITMD  108 (193)
Q Consensus        72 ~~~~wfQlY~~~dr~-~~~~ll~RAe~AG~~AlvvTVD  108 (193)
                      +.+..--+-.....+ ..++..+.++..++.|+-+.+.
T Consensus       113 ~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln  150 (333)
T TIGR02151       113 NGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLN  150 (333)
T ss_pred             CCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCc
Confidence            555433222211111 0223334445556777777664

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=98.46  E-value=1.3e-06  Score=76.67  Aligned_cols=94  Identities=14%  Similarity=0.125  Sum_probs=62.8

Q ss_pred             cCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHh----hCCCCceEEE
Q psy13219          3 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRA----QNPSTTLWLQ   78 (193)
Q Consensus         3 ~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~----~~~~~~~wfQ   78 (193)
                      .+++++|++|+++|.++++||+++.|-      -..+..+|++|++.|..+++=-+   ++|+..+    ..+.     |
T Consensus        17 ~s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK~---~~E~~~sfvrk~k~~-----~   82 (321)
T TIGR01306        17 NSRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHRF---DEESRIPFIKDMQER-----G   82 (321)
T ss_pred             CCHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEecC---CHHHHHHHHHhcccc-----c
Confidence            356789999999999999999999982      37899999999999999988663   5655332    2222     3


Q ss_pred             EEeecCHHHH---HHHHHHHHHcCCcEEEEeeccC
Q psy13219         79 MYIFKDRALS---LQMVQRAERSGYSAIVITMDTA  110 (193)
Q Consensus        79 lY~~~dr~~~---~~ll~RAe~AG~~AlvvTVD~p  110 (193)
                      +++.-.-..+   .+.++.-.++|..+=+|.+|+.
T Consensus        83 L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~a  117 (321)
T TIGR01306        83 LFASISVGVKACEYEFVTQLAEEALTPEYITIDIA  117 (321)
T ss_pred             cEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCc
Confidence            3332211111   1233333466866666777764

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=98.00  E-value=3.5e-05  Score=67.91  Aligned_cols=56  Identities=14%  Similarity=0.015  Sum_probs=46.4

Q ss_pred             cCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHH
Q psy13219          3 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVR   67 (193)
Q Consensus         3 ~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~   67 (193)
                      .+++++|++|+|+|.++++||||++|-      -..+..+|++|++.|..+++=-   +++|+..
T Consensus        20 ~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~   75 (326)
T PRK05458         20 NSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHR---FDPEARI   75 (326)
T ss_pred             CCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEec---CCHHHHH
Confidence            456789999999999999999999982      2688999999999998888755   3566644

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=96.99  E-value=0.012  Score=50.79  Aligned_cols=96  Identities=16%  Similarity=0.225  Sum_probs=56.0

Q ss_pred             CcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeec-c--------------------------Ccccc
Q psy13219         10 SGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILS-L--------------------------MSTTS   62 (193)
Q Consensus        10 ~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~ls-t--------------------------~ss~s   62 (193)
                      ++|+++|.++..||++||.-.    ....|.  .+...+.|.-+++. |                          +.+..
T Consensus         1 l~~~~~g~~l~npi~~aag~~----~~~~~~--~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g   74 (300)
T TIGR01037         1 LEVELFGIRFKNPLILASGIM----GSGVES--LRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG   74 (300)
T ss_pred             CcEEECCEECCCCCEeCCcCC----CCCHHH--HHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence            478999999999999999322    112222  22222334444443 1                          11222


Q ss_pred             H----HHHHhhC--CCCceEEEEEeecCHHHHHHHHHHHHHcC--CcEEEEeeccCCC
Q psy13219         63 L----EEVRAQN--PSTTLWLQMYIFKDRALSLQMVQRAERSG--YSAIVITMDTAVL  112 (193)
Q Consensus        63 ~----eei~~~~--~~~~~wfQlY~~~dr~~~~~ll~RAe~AG--~~AlvvTVD~pv~  112 (193)
                      +    +.+....  -+.+...||+ -.|.+...+..++.++++  +.+|-|.+=+|..
T Consensus        75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~  131 (300)
T TIGR01037        75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV  131 (300)
T ss_pred             HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCC
Confidence            3    3333221  1246788996 345666777888888764  8888887777753

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=96.97  E-value=0.016  Score=50.00  Aligned_cols=96  Identities=14%  Similarity=0.106  Sum_probs=55.2

Q ss_pred             CCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeee-ccCc--------------------------cc
Q psy13219          9 DSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL-SLMS--------------------------TT   61 (193)
Q Consensus         9 d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~l-st~s--------------------------s~   61 (193)
                      |++|+++|.++.-||++|.-..    .-.+|  .++.+.+.|.-+++ .|.+                          +.
T Consensus         1 ~l~~~~~G~~~~nPv~~aag~~----~~~~~--~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~   74 (301)
T PRK07259          1 RLSVELPGLKLKNPVMPASGTF----GFGGE--YARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP   74 (301)
T ss_pred             CCceEECCEECCCCcEECCcCC----CCCHH--HHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence            6899999999999999986322    11233  33333334333322 2221                          22


Q ss_pred             cHH----HHHhhC--CCCceEEEEEeecCHHHHHHHHHHHHHcC-CcEEEEeeccCC
Q psy13219         62 SLE----EVRAQN--PSTTLWLQMYIFKDRALSLQMVQRAERSG-YSAIVITMDTAV  111 (193)
Q Consensus        62 s~e----ei~~~~--~~~~~wfQlY~~~dr~~~~~ll~RAe~AG-~~AlvvTVD~pv  111 (193)
                      .++    ++....  -+.+...|+. -.+.+...+..++++++| +.+|-|.+=+|.
T Consensus        75 g~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~  130 (301)
T PRK07259         75 GVDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPN  130 (301)
T ss_pred             CHHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCC
Confidence            233    332211  1345667774 335666677788888887 888877775553

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=96.88  E-value=0.02  Score=49.16  Aligned_cols=40  Identities=10%  Similarity=0.124  Sum_probs=31.1

Q ss_pred             CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219         72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVL  112 (193)
Q Consensus        72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~  112 (193)
                      +.+...||.- .+.+...+..++++++|+.+|-|++-+|..
T Consensus        89 ~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~  128 (296)
T cd04740          89 GTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNV  128 (296)
T ss_pred             CCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence            4567888864 456777788999999999999999777753

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.86  E-value=0.0084  Score=53.79  Aligned_cols=90  Identities=17%  Similarity=0.202  Sum_probs=59.2

Q ss_pred             CCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCc----cccHHHHHhhCCC--C----
Q psy13219          4 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMS----TTSLEEVRAQNPS--T----   73 (193)
Q Consensus         4 dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~s----s~s~eei~~~~~~--~----   73 (193)
                      +.+++|+++.+-+..+..||+.+||..  .    .+..+|++.+++|-.-++...+    ..+.|++.+..-.  .    
T Consensus        31 ~~~dvdls~~~~~~~i~~Piv~a~M~g--V----t~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~  104 (368)
T PRK08649         31 DPEDVSTSWQIDAYRFEIPIIASPMDA--V----VSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEAT  104 (368)
T ss_pred             CHHHceeeeeecceeccCcEeccCCcc--c----CCHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHH
Confidence            446889998898999999999999843  3    4567888999998866665321    2355555442100  0    


Q ss_pred             ceEEEEE-eecCHHHHHHHHHHHHHcC
Q psy13219         74 TLWLQMY-IFKDRALSLQMVQRAERSG   99 (193)
Q Consensus        74 ~~wfQlY-~~~dr~~~~~ll~RAe~AG   99 (193)
                      ...-++| -+.|.++..++++..+++|
T Consensus       105 ~~~~~~~~~P~~p~l~~~iv~~~~~~~  131 (368)
T PRK08649        105 RLMQELYAEPIKPELITERIAEIRDAG  131 (368)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhCe
Confidence            0001112 1467888889999988875

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=96.73  E-value=0.025  Score=49.72  Aligned_cols=37  Identities=11%  Similarity=0.095  Sum_probs=24.2

Q ss_pred             CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219         72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT  109 (193)
Q Consensus        72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~  109 (193)
                      +.+.+.|+.- .+.+...+..++++++|+.+|-|.+-.
T Consensus        99 ~~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~  135 (325)
T cd04739          99 SIPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYA  135 (325)
T ss_pred             CCeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            3566677633 345556677777777777777777764

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=96.70  E-value=0.022  Score=51.48  Aligned_cols=24  Identities=25%  Similarity=0.345  Sum_probs=21.0

Q ss_pred             CCCCCcceECCceeCCceeecchh
Q psy13219          6 CDRDSGLTVLGTRYRCPVGIAPSA   29 (193)
Q Consensus         6 ~~~d~~t~~lG~~~~~P~~iaP~g   29 (193)
                      +..|++|+++|.++.-||++|.-.
T Consensus         7 ~~~dLst~~~Gl~l~NP~i~ASgp   30 (385)
T PLN02495          7 SEPDLSVTVNGLKMPNPFVIGSGP   30 (385)
T ss_pred             CCCcceEEECCEEcCCCcEeCCcc
Confidence            567999999999999999998643

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=96.70  E-value=0.044  Score=47.48  Aligned_cols=41  Identities=10%  Similarity=0.074  Sum_probs=33.4

Q ss_pred             CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219         72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVL  112 (193)
Q Consensus        72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~  112 (193)
                      +.+...|+.-..|.+...+.+++++++|+.+|-|.+.+|..
T Consensus        99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~  139 (299)
T cd02940          99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG  139 (299)
T ss_pred             CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence            45778888655478888888999988999999999998864

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=96.39  E-value=0.027  Score=50.62  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=56.6

Q ss_pred             cCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCc----cccH----HHHHhhCCC--
Q psy13219          3 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMS----TTSL----EEVRAQNPS--   72 (193)
Q Consensus         3 ~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~s----s~s~----eei~~~~~~--   72 (193)
                      +|.+++||+..+=+.++..||+.|||+.  +    -+..++.++.++|-+-++|..+    +...    .+|.....+  
T Consensus        27 ~~~~~v~~~~~i~~~~l~~PivlAPMag--V----td~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~~QI~g~~~~~~  100 (369)
T TIGR01304        27 RSSKDVDTAWQIDAYRFELPFIAHPMDA--L----VSPEFAIELGELGGLGVLNLEGLWGRHEDPDPAIAKIAEAYEEGD  100 (369)
T ss_pred             CChhhccceeEEcceecCCceeecCCCc--c----cCHHHHHHHHHcCCcccccchHHHhcCCCHHHHHHHHhhcCCChH
Confidence            4556778887777788899999999864  3    3567888899998866676421    1122    233221111  


Q ss_pred             ---C-ceEEEEEe-ecCHHHHHHHHHHHHHcC
Q psy13219         73 ---T-TLWLQMYI-FKDRALSLQMVQRAERSG   99 (193)
Q Consensus        73 ---~-~~wfQlY~-~~dr~~~~~ll~RAe~AG   99 (193)
                         . ..--++|. +.|.+++.++++.+++++
T Consensus       101 ~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~  132 (369)
T TIGR01304       101 QAAATRLLQELHAAPLKPELLGERIAEVRDSG  132 (369)
T ss_pred             HHHHHHHHHHcCCCccChHHHHHHHHHHHhcc
Confidence               0 00011222 357888888899888886

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=96.09  E-value=0.09  Score=44.90  Aligned_cols=41  Identities=15%  Similarity=0.260  Sum_probs=32.8

Q ss_pred             CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCC
Q psy13219         72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLG  113 (193)
Q Consensus        72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G  113 (193)
                      +.+...|+.- .+.+...+.+++++++|+.+|-|++-+|...
T Consensus        98 ~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~  138 (289)
T cd02810          98 GQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVG  138 (289)
T ss_pred             CCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCC
Confidence            4567778754 3667788899999999999999999988643

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=96.07  E-value=0.047  Score=48.44  Aligned_cols=53  Identities=17%  Similarity=0.053  Sum_probs=40.2

Q ss_pred             CCCCCcceECCc-----eeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHH
Q psy13219          6 CDRDSGLTVLGT-----RYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV   66 (193)
Q Consensus         6 ~~~d~~t~~lG~-----~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei   66 (193)
                      +++|++++|--+     .+..||+-|.|      .--+|..+|.+-++.|..+++--  +.++|+-
T Consensus        26 ~evdl~~~~~~~~~~~~~~~iPii~AnM------dtv~~~~mA~~la~~g~~~~iHk--~~~~e~~   83 (343)
T TIGR01305        26 ADVELERTFTFRNSKQTYSGVPIIAANM------DTVGTFEMAAALSQHSIFTAIHK--HYSVDEW   83 (343)
T ss_pred             HHceeeEEEccccCCceeeCCceEecCC------CcccCHHHHHHHHHCCCeEEEee--CCCHHHH
Confidence            678899888644     78999998764      22378889999999999999844  4566653

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=96.02  E-value=0.027  Score=49.62  Aligned_cols=94  Identities=17%  Similarity=0.097  Sum_probs=59.9

Q ss_pred             CCCCCCCcceECC-ceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhC---CCCceEEEE
Q psy13219          4 NVCDRDSGLTVLG-TRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQN---PSTTLWLQM   79 (193)
Q Consensus         4 dv~~~d~~t~~lG-~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~---~~~~~wfQl   79 (193)
                      +.+++|++|.|.+ ..+..||+.|||...      .|..+|.+.+++|-.-++..  +.+.|+..+..   .......+.
T Consensus        17 ~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~--~~~~~~~~~~i~~vk~~l~v~~~   88 (325)
T cd00381          17 LPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHR--NMSIEEQAEEVRKVKGRLLVGAA   88 (325)
T ss_pred             CHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeC--CCCHHHHHHHHHHhccCceEEEe
Confidence            3567899999998 889999999998643      35567777778877666643  24555554322   222223333


Q ss_pred             EeecCHHHHHHHHHHHHHcCCcEEEEee
Q psy13219         80 YIFKDRALSLQMVQRAERSGYSAIVITM  107 (193)
Q Consensus        80 Y~~~dr~~~~~ll~RAe~AG~~AlvvTV  107 (193)
                       +..+ ....+.++...++|++.|+|+.
T Consensus        89 -~~~~-~~~~~~~~~l~eagv~~I~vd~  114 (325)
T cd00381          89 -VGTR-EDDKERAEALVEAGVDVIVIDS  114 (325)
T ss_pred             -cCCC-hhHHHHHHHHHhcCCCEEEEEC
Confidence             2222 2344566666678999888755

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=95.94  E-value=0.058  Score=47.08  Aligned_cols=88  Identities=18%  Similarity=0.144  Sum_probs=57.6

Q ss_pred             CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccC-ccc-------cHHHHHhhC-CCCceEEEEEeecCHH
Q psy13219         16 GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLM-STT-------SLEEVRAQN-PSTTLWLQMYIFKDRA   86 (193)
Q Consensus        16 G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~-ss~-------s~eei~~~~-~~~~~wfQlY~~~dr~   86 (193)
                      |..+..|+++|||...      .+.+..+.|.+.|.-++.+-+ +..       ...++.... .+.+.-.||. -.|.+
T Consensus         3 ~~~~~~~l~lAPm~~~------t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~~   75 (319)
T TIGR00737         3 NIQLKSRVVLAPMAGV------TDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDPD   75 (319)
T ss_pred             CccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCHH
Confidence            4577899999998643      344455556666654444322 111       122222222 2456779994 66788


Q ss_pred             HHHHHHHHHHHcCCcEEEEeeccC
Q psy13219         87 LSLQMVQRAERSGYSAIVITMDTA  110 (193)
Q Consensus        87 ~~~~ll~RAe~AG~~AlvvTVD~p  110 (193)
                      ...+..++++++||.+|=|..-.|
T Consensus        76 ~~~~aa~~~~~~G~d~IelN~gcP   99 (319)
T TIGR00737        76 TMAEAAKINEELGADIIDINMGCP   99 (319)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCC
Confidence            888899999999999998888776

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=95.72  E-value=0.074  Score=48.03  Aligned_cols=50  Identities=16%  Similarity=0.122  Sum_probs=39.7

Q ss_pred             eeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhh
Q psy13219         18 RYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ   69 (193)
Q Consensus        18 ~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~   69 (193)
                      .+..||++|||++..+ -.+.-.++|.||+.+|...+++... .+.|++...
T Consensus        75 ~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~~~  124 (392)
T cd02808          75 KLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEEREGG  124 (392)
T ss_pred             ccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHhhh
Confidence            3578999999987765 4567799999999999999888644 667777543

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=95.65  E-value=0.19  Score=44.20  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=19.4

Q ss_pred             CCcceECCceeCCceeecchhcc
Q psy13219          9 DSGLTVLGTRYRCPVGIAPSAMQ   31 (193)
Q Consensus         9 d~~t~~lG~~~~~P~~iaP~g~~   31 (193)
                      |++|+++|.++.-||++|.-++.
T Consensus         2 ~l~~~~~Gl~l~nPv~~asg~~~   24 (334)
T PRK07565          2 DLSTTYLGLTLRNPLVASASPLS   24 (334)
T ss_pred             CceEEECCEecCCCCEecCcCCC
Confidence            68999999999999998775543

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=95.59  E-value=0.13  Score=46.63  Aligned_cols=40  Identities=10%  Similarity=0.110  Sum_probs=29.7

Q ss_pred             CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219         72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAV  111 (193)
Q Consensus        72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv  111 (193)
                      +.+...||.-..+.+...+..+.++++|+.+|-|.+=.|.
T Consensus        99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~  138 (420)
T PRK08318         99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH  138 (420)
T ss_pred             CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence            4556777765446677778888888888888888888875

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=95.11  E-value=0.43  Score=41.71  Aligned_cols=20  Identities=10%  Similarity=0.145  Sum_probs=18.0

Q ss_pred             CCcceECCceeCCceeecch
Q psy13219          9 DSGLTVLGTRYRCPVGIAPS   28 (193)
Q Consensus         9 d~~t~~lG~~~~~P~~iaP~   28 (193)
                      |++|+++|.++.-||++|.-
T Consensus         1 dL~~~~~Gl~l~NPv~~AsG   20 (310)
T PRK02506          1 STSTQIAGFKFDNCLMNAAG   20 (310)
T ss_pred             CCceEECCEECCCCCEeCCC
Confidence            67999999999999999763

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=94.04  E-value=0.91  Score=40.21  Aligned_cols=43  Identities=28%  Similarity=0.466  Sum_probs=28.6

Q ss_pred             CCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeee
Q psy13219          6 CDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL   55 (193)
Q Consensus         6 ~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~l   55 (193)
                      .+++++|+++|.++..||++|. |..    .++|  ..+...+.|.-+++
T Consensus        45 ~~~~L~~~~~Gl~l~nPi~~As-G~~----~~~~--~~~~~~~~G~Gavv   87 (344)
T PRK05286         45 TDPRLPVTVMGLTFPNPVGLAA-GFD----KNGE--AIDALGALGFGFVE   87 (344)
T ss_pred             CCCCCceEECCEECCCCCEECC-CCC----CChH--HHHHHHHcCCCEEE
Confidence            4678999999999999998855 322    2344  33445555554443

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=93.22  E-value=1  Score=40.99  Aligned_cols=56  Identities=16%  Similarity=0.081  Sum_probs=40.1

Q ss_pred             CCCCCcceEC-CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhh
Q psy13219          6 CDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ   69 (193)
Q Consensus         6 ~~~d~~t~~l-G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~   69 (193)
                      +++|++|.+. ...+..||+-|||...      .|..+|.|.+++|-.-++..  +.++|++.+.
T Consensus        27 ~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~~--~~~~e~l~~e   83 (404)
T PRK06843         27 SEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHK--NMSIEAQRKE   83 (404)
T ss_pred             HhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEecC--CCCHHHHHHH
Confidence            4678887775 4557899999998632      25678888888888777763  5677776443

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=92.93  E-value=1.2  Score=39.05  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=20.8

Q ss_pred             CCCCCCCcceECCceeCCceeecc
Q psy13219          4 NVCDRDSGLTVLGTRYRCPVGIAP   27 (193)
Q Consensus         4 dv~~~d~~t~~lG~~~~~P~~iaP   27 (193)
                      ...+.|++|+++|.++..||++|.
T Consensus        33 ~~~~~~L~~~~~Gl~l~nPi~~As   56 (327)
T cd04738          33 VYDDPRLEVEVFGLTFPNPVGLAA   56 (327)
T ss_pred             CCCCCCcceEECCEECCCCCEeCc
Confidence            356789999999999999998855

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=90.28  E-value=4.5  Score=35.47  Aligned_cols=89  Identities=18%  Similarity=0.031  Sum_probs=57.8

Q ss_pred             CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccC-ccccH--------HHHHhhCCCCceEEEEEeecCHH
Q psy13219         16 GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLM-STTSL--------EEVRAQNPSTTLWLQMYIFKDRA   86 (193)
Q Consensus        16 G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~-ss~s~--------eei~~~~~~~~~wfQlY~~~dr~   86 (193)
                      +..+..|+++|||++.      .+...-+.|.+.|..++.+-+ +..++        ..+.......+.-.|| .-.|.+
T Consensus         5 ~~~~~~~~~lAPM~g~------td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl-~g~~~~   77 (321)
T PRK10415          5 QYQLRNRLIAAPMAGI------TDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI-AGSDPK   77 (321)
T ss_pred             CccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEE-eCCCHH
Confidence            3467789999998533      355666777777755544332 21111        1111111123456898 466788


Q ss_pred             HHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219         87 LSLQMVQRAERSGYSAIVITMDTAV  111 (193)
Q Consensus        87 ~~~~ll~RAe~AG~~AlvvTVD~pv  111 (193)
                      ...+..+++++.||+.|=+..=+|+
T Consensus        78 ~~~~aa~~~~~~g~d~IdlN~gCP~  102 (321)
T PRK10415         78 EMADAARINVESGAQIIDINMGCPA  102 (321)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCCCH
Confidence            8888888888999999999999996

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=90.05  E-value=3.1  Score=35.94  Aligned_cols=17  Identities=24%  Similarity=0.149  Sum_probs=14.9

Q ss_pred             ceECCceeCCceeecch
Q psy13219         12 LTVLGTRYRCPVGIAPS   28 (193)
Q Consensus        12 t~~lG~~~~~P~~iaP~   28 (193)
                      ++++|.++.-||++|.-
T Consensus         1 ~~~~Gl~l~nPi~~Asg   17 (294)
T cd04741           1 VTPPGLTISPPLMNAAG   17 (294)
T ss_pred             CccCCeeCCCCCEECCC
Confidence            57899999999999873

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=87.79  E-value=9.7  Score=33.67  Aligned_cols=39  Identities=33%  Similarity=0.543  Sum_probs=25.5

Q ss_pred             CcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeee
Q psy13219         10 SGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL   55 (193)
Q Consensus        10 ~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~l   55 (193)
                      ++|+++|.++..||++|. |.    ...+|  ..+...++|.-+++
T Consensus        46 L~~~~~Gl~l~NPi~lAs-G~----~~~~~--~~~~~~~~G~Gavv   84 (335)
T TIGR01036        46 LEVTVLGLKFPNPLGLAA-GF----DKDGE--AIDALGAMGFGFLE   84 (335)
T ss_pred             CcEEECCEECCCCcEeCC-cc----CCCHH--HHHHHHhcCCCEEE
Confidence            899999999999999943 32    23455  34444444555544

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=87.18  E-value=1.8  Score=36.98  Aligned_cols=86  Identities=17%  Similarity=0.349  Sum_probs=61.3

Q ss_pred             CceEEEEEeecCHH----HHHHHHHHHHHc---CCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccch
Q psy13219         73 TTLWLQMYIFKDRA----LSLQMVQRAERS---GYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDIS  145 (193)
Q Consensus        73 ~~~wfQlY~~~dr~----~~~~ll~RAe~A---G~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~  145 (193)
                      +..|+-|-+-.|..    ...+++++|+..   ||..+-++.|.++..+|-.+..-.+-+|..    .            
T Consensus        90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg----~------------  153 (248)
T cd04728          90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLG----S------------  153 (248)
T ss_pred             CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC----c------------
Confidence            46799999988775    456899999999   999999999999999998887322211100    0            


Q ss_pred             hhcccccccCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEec
Q psy13219        146 KFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKG  191 (193)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKG  191 (193)
                                      .+++. ..-.+++-|+.+++..+.||++-|
T Consensus       154 ----------------pIGsg-~Gi~~~~~I~~I~e~~~vpVI~eg  182 (248)
T cd04728         154 ----------------PIGSG-QGLLNPYNLRIIIERADVPVIVDA  182 (248)
T ss_pred             ----------------CCCCC-CCCCCHHHHHHHHHhCCCcEEEeC
Confidence                            00000 122358889999999889998865

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=86.83  E-value=7  Score=33.83  Aligned_cols=157  Identities=11%  Similarity=0.162  Sum_probs=80.7

Q ss_pred             eeCCceeecchhccccCCchHHH---HHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeec-----CHHHHH
Q psy13219         18 RYRCPVGIAPSAMQKLAHADGEV---ATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFK-----DRALSL   89 (193)
Q Consensus        18 ~~~~P~~iaP~g~~~l~~~~gE~---~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~-----dr~~~~   89 (193)
                      +...|++|.=.-.. +-|...|.   .+..+|.+..+|.++=-==..++|.+..+...|..++|+=-..     +-+.++
T Consensus        40 ~~~~Pvii~~~~~~-~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~  118 (281)
T PRK06806         40 ELNSPIILQIAEVR-LNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTK  118 (281)
T ss_pred             HhCCCEEEEcCcch-hccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHH
Confidence            34567776332111 22223332   3345666778888874332357787777766677788874322     224567


Q ss_pred             HHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhccc--ccccCCcchhhHhhhh-
Q psy13219         90 QMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDI--SAEECSSGLTDYVANQ-  166 (193)
Q Consensus        90 ~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-  166 (193)
                      ++++.|++.|..   |-.|.-.+|.-+.+...   +  ..+..+..+.       ..|.+.  .+.- .-+++...+.. 
T Consensus       119 ~v~~~a~~~gv~---veaE~ghlG~~d~~~~~---~--g~s~t~~eea-------~~f~~~tg~DyL-AvaiG~~hg~~~  182 (281)
T PRK06806        119 EIVELAKQYGAT---VEAEIGRVGGSEDGSED---I--EMLLTSTTEA-------KRFAEETDVDAL-AVAIGNAHGMYN  182 (281)
T ss_pred             HHHHHHHHcCCe---EEEEeeeECCccCCccc---c--cceeCCHHHH-------HHHHHhhCCCEE-EEccCCCCCCCC
Confidence            778888888765   34555556644432110   0  0111111110       000000  0000 00001111111 


Q ss_pred             CCCCCCHHHHHHHHhcCCCCEEEec
Q psy13219        167 FDDSVDWDDVRSLVQATKLPIVCKG  191 (193)
Q Consensus       167 ~~~~~tW~di~wlr~~~~lPivlKG  191 (193)
                      -.|.+++|-|+.+++..+.|+|+=|
T Consensus       183 ~~~~l~~~~L~~i~~~~~iPlV~hG  207 (281)
T PRK06806        183 GDPNLRFDRLQEINDVVHIPLVLHG  207 (281)
T ss_pred             CCCccCHHHHHHHHHhcCCCEEEEC
Confidence            2478999999999999999999877

>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2

Probab=85.48  E-value=1.3  Score=30.91  Aligned_cols=55  Identities=18%  Similarity=0.328  Sum_probs=41.3

Q ss_pred             eeeeccCccccHHHHHhhCCC----------CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219         52 IMILSLMSTTSLEEVRAQNPS----------TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT  106 (193)
Q Consensus        52 ~~~lst~ss~s~eei~~~~~~----------~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT  106 (193)
                      .++.=+....++|++.+..|+          ..-|+=+...-+++...+++.+.+++|++.|+++
T Consensus         6 ~~l~~Nvp~~~l~~v~~ilPg~~~PTVs~L~~~~w~AV~~vV~~~~~~~~~~~Lk~~GA~~Ilv~   70 (75)
T PF08029_consen    6 VLLMMNVPRESLEEVIKILPGLKSPTVSPLADEDWVAVHAVVPEKQVWDLMDKLKAAGASDILVL   70 (75)
T ss_dssp             EEEEEEEECCCHHHHHHHS--SSS-EEEE-SSTTEEEEEEEEECCCHHHHHHHHHCTT-EEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHhCCCCCCCceeecCCCCEEEEEEEecHHHHHHHHHHHHHcCCCEEEEE
Confidence            344445556788888877541          2359888888888999999999999999999875

4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=85.35  E-value=6.5  Score=34.68  Aligned_cols=90  Identities=16%  Similarity=0.079  Sum_probs=54.6

Q ss_pred             CceeCCceeecchhccccCCchHHHHHHHHHhccCc-eeeeccC----c--cccHHHHHhh-CCCCceEEEEEeecCHHH
Q psy13219         16 GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDA-IMILSLM----S--TTSLEEVRAQ-NPSTTLWLQMYIFKDRAL   87 (193)
Q Consensus        16 G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~-~~~lst~----s--s~s~eei~~~-~~~~~~wfQlY~~~dr~~   87 (193)
                      +.....|+++|||++..      +...-+-|.+.|. -++.+-+    +  .....+.... ..+.+.-.||. -.|.+.
T Consensus         6 ~~~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~   78 (333)
T PRK11815          6 SKLPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPAD   78 (333)
T ss_pred             ccCCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHH
Confidence            45567799999986432      2333333444453 2222211    1  0111222222 23567889995 667888


Q ss_pred             HHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219         88 SLQMVQRAERSGYSAIVITMDTAVL  112 (193)
Q Consensus        88 ~~~ll~RAe~AG~~AlvvTVD~pv~  112 (193)
                      ..+..++++++||..|=|...+|..
T Consensus        79 ~~~aA~~~~~~g~d~IdlN~gCP~~  103 (333)
T PRK11815         79 LAEAAKLAEDWGYDEINLNVGCPSD  103 (333)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCHH
Confidence            8888999999999998888887654

>KOG2335|consensus

Probab=85.15  E-value=10  Score=34.04  Aligned_cols=24  Identities=17%  Similarity=0.749  Sum_probs=19.1

Q ss_pred             CCCCCHHHHHHHHhcCC-CCEEEec
Q psy13219        168 DDSVDWDDVRSLVQATK-LPIVCKG  191 (193)
Q Consensus       168 ~~~~tW~di~wlr~~~~-lPivlKG  191 (193)
                      .+.++|+.|+-+|+.-. .||++-|
T Consensus       186 ~~pad~~~i~~v~~~~~~ipviaNG  210 (358)
T KOG2335|consen  186 TGPADWEAIKAVRENVPDIPVIANG  210 (358)
T ss_pred             CCCcCHHHHHHHHHhCcCCcEEeeC
Confidence            45678888888888887 8888766

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=83.94  E-value=4.5  Score=34.71  Aligned_cols=18  Identities=22%  Similarity=0.464  Sum_probs=15.0

Q ss_pred             CcceECCceeCCceeecc
Q psy13219         10 SGLTVLGTRYRCPVGIAP   27 (193)
Q Consensus        10 ~~t~~lG~~~~~P~~iaP   27 (193)
                      ++|+++|.++.-||++|.
T Consensus         2 L~~~~~Gl~l~nPi~~as   19 (295)
T PF01180_consen    2 LSTNFCGLTLKNPIGLAS   19 (295)
T ss_dssp             G-EEETTEEESSSEEE-T
T ss_pred             ccEEECCEEcCCCcEECC
Confidence            689999999999999974

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain

Probab=83.31  E-value=6.7  Score=28.72  Aligned_cols=57  Identities=18%  Similarity=0.397  Sum_probs=44.2

Q ss_pred             CceeeeccCccccHHHHHhhCCC----------CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219         50 DAIMILSLMSTTSLEEVRAQNPS----------TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT  106 (193)
Q Consensus        50 g~~~~lst~ss~s~eei~~~~~~----------~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT  106 (193)
                      +-.|+.=......+|++.+..|+          ...|+-+...-+++...+++.+-+++|++.|+++
T Consensus        28 ~~~~v~~Nvp~~~l~~v~~ilPg~~~PTVs~l~~~~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~   94 (100)
T TIGR03455        28 GKVLLMMNVPRDNLDEVRALLPGLEGPTVSPLADEGWVAVHAVVDEKVVNELIDKLKAAGARDILVL   94 (100)
T ss_pred             heeEEEEeCChhhHHHHHHhcCCCCCCCcCcCCCCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence            44455556666778888766431          1359999999999999999999999999999875

This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=82.87  E-value=9.1  Score=31.13  Aligned_cols=40  Identities=18%  Similarity=0.122  Sum_probs=32.3

Q ss_pred             CCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219         71 PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAV  111 (193)
Q Consensus        71 ~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv  111 (193)
                      .+.+.-.||. -.|.+...+..++++++||.+|=|.+-.|.
T Consensus        53 ~~~p~~~qi~-g~~~~~~~~aa~~~~~aG~d~ieln~g~p~   92 (231)
T cd02801          53 EERPLIVQLG-GSDPETLAEAAKIVEELGADGIDLNMGCPS   92 (231)
T ss_pred             cCCCEEEEEc-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence            3567788886 456777788899999999999999988764

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases

Probab=82.17  E-value=4.5  Score=33.79  Aligned_cols=73  Identities=16%  Similarity=0.078  Sum_probs=48.9

Q ss_pred             HHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEE------------------------------EEEeecCHHHH
Q psy13219         39 EVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWL------------------------------QMYIFKDRALS   88 (193)
Q Consensus        39 E~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wf------------------------------QlY~~~dr~~~   88 (193)
                      +..+.+.-.+.+-..++||++...++.+.+..|+-+..+                              +.|.......+
T Consensus       118 ~~~v~~~l~~~~~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (237)
T cd08585         118 ERRVLAALKDYKGPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSNDEADPAFWNEALLSALFSNLLTRPDFIAYHLDDLP  197 (237)
T ss_pred             HHHHHHHHHhcCCCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcccccccchhHHHHHhhhhhhccCCCEEEeChhhCc
Confidence            344555555556678889999888998887765432211                              01111223345


Q ss_pred             HHHHHHHHHc-CCcEEEEeeccCC
Q psy13219         89 LQMVQRAERS-GYSAIVITMDTAV  111 (193)
Q Consensus        89 ~~ll~RAe~A-G~~AlvvTVD~pv  111 (193)
                      .+++++|+++ |.+-.+.|||.+.
T Consensus       198 ~~~v~~~~~~~G~~v~vWTVnd~~  221 (237)
T cd08585         198 NPFVTLARALLGMPVIVWTVRTEE  221 (237)
T ss_pred             CHHHHHHHHhcCCcEEEEeCCCHH
Confidence            6799999999 9999999999763

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>PRK00208 thiG thiazole synthase; Reviewed

Probab=82.10  E-value=4.8  Score=34.43  Aligned_cols=86  Identities=16%  Similarity=0.344  Sum_probs=60.8

Q ss_pred             CceEEEEEeecCHH----HHHHHHHHHHHc---CCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccch
Q psy13219         73 TTLWLQMYIFKDRA----LSLQMVQRAERS---GYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDIS  145 (193)
Q Consensus        73 ~~~wfQlY~~~dr~----~~~~ll~RAe~A---G~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~  145 (193)
                      +..|+-|-+-.|..    ...+++++|+..   ||..+-++.|.++..+|-.+..-.+ +|+   +..       +    
T Consensus        90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~-vmP---lg~-------p----  154 (250)
T PRK00208         90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAA-VMP---LGA-------P----  154 (250)
T ss_pred             CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCE-eCC---CCc-------C----
Confidence            46799999988765    456899999999   9999989999999999988873222 111   000       0    


Q ss_pred             hhcccccccCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEec
Q psy13219        146 KFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKG  191 (193)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKG  191 (193)
                                       +++- .+-.+++-|+.+++..+.||++-|
T Consensus       155 -----------------IGsg-~gi~~~~~i~~i~e~~~vpVIvea  182 (250)
T PRK00208        155 -----------------IGSG-LGLLNPYNLRIIIEQADVPVIVDA  182 (250)
T ss_pred             -----------------CCCC-CCCCCHHHHHHHHHhcCCeEEEeC
Confidence                             0000 122357889999998888998754

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=81.63  E-value=6.7  Score=32.10  Aligned_cols=82  Identities=15%  Similarity=0.174  Sum_probs=45.5

Q ss_pred             CCceeecchhccccCCchHHHHHHHHHhccCceeeeccCc--cccH----HHHHhhCCCCceEEEEEeecCHHHHHHHHH
Q psy13219         20 RCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMS--TTSL----EEVRAQNPSTTLWLQMYIFKDRALSLQMVQ   93 (193)
Q Consensus        20 ~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~s--s~s~----eei~~~~~~~~~wfQlY~~~dr~~~~~ll~   93 (193)
                      ..|++.|||.+  +.    +...++++.+.|-.-.+|...  ...+    +++.+.. +.+.-+++.....+....+.++
T Consensus         2 ~~pi~~a~m~g--~~----~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~-~~~~~v~~i~~~~~~~~~~~~~   74 (236)
T cd04730           2 RYPIIQAPMAG--VS----TPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALT-DKPFGVNLLVPSSNPDFEALLE   74 (236)
T ss_pred             CCCEECCCCCC--CC----CHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHhc-CCCeEEeEecCCCCcCHHHHHH
Confidence            46999999653  32    334555555665433344322  1112    2222221 1233466655432235668899


Q ss_pred             HHHHcCCcEEEEeec
Q psy13219         94 RAERSGYSAIVITMD  108 (193)
Q Consensus        94 RAe~AG~~AlvvTVD  108 (193)
                      .++++|+..|.+.-.
T Consensus        75 ~~~~~g~d~v~l~~~   89 (236)
T cd04730          75 VALEEGVPVVSFSFG   89 (236)
T ss_pred             HHHhCCCCEEEEcCC
Confidence            999999999988644

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=81.39  E-value=11  Score=32.31  Aligned_cols=85  Identities=12%  Similarity=0.035  Sum_probs=57.3

Q ss_pred             CceeecchhccccCCchHHHHHHHHHhccCcee--eeccCc---cccHHHH-------HhhC-CCCceEEEEEeecCHHH
Q psy13219         21 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIM--ILSLMS---TTSLEEV-------RAQN-PSTTLWLQMYIFKDRAL   87 (193)
Q Consensus        21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~--~lst~s---s~s~eei-------~~~~-~~~~~wfQlY~~~dr~~   87 (193)
                      .|.++.|+.-.+-++.++=..+.+-..+.|+--  +.+|.+   +.|.||-       .+.. +..+...++- . +-+.
T Consensus         5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~   82 (289)
T cd00951           5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT   82 (289)
T ss_pred             EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence            466788876555567777778888888888644  344443   3454433       2222 2345677764 3 6777


Q ss_pred             HHHHHHHHHHcCCcEEEEee
Q psy13219         88 SLQMVQRAERSGYSAIVITM  107 (193)
Q Consensus        88 ~~~ll~RAe~AG~~AlvvTV  107 (193)
                      +.++.++|+++|+.++++.-
T Consensus        83 ~i~~a~~a~~~Gad~v~~~p  102 (289)
T cd00951          83 AIAYAQAAEKAGADGILLLP  102 (289)
T ss_pred             HHHHHHHHHHhCCCEEEECC
Confidence            88899999999999999954

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=81.27  E-value=38  Score=29.88  Aligned_cols=40  Identities=33%  Similarity=0.450  Sum_probs=27.1

Q ss_pred             CCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCce
Q psy13219          9 DSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAI   52 (193)
Q Consensus         9 d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~   52 (193)
                      +++++++|.++.-||++|.    +...-++|...+.++..+|-.
T Consensus         1 ~l~~~~~Gl~f~NPl~lAa----G~~~~~~~~~~~~~~~g~G~i   40 (310)
T COG0167           1 DLSTEILGLKFPNPLGLAA----GFDGKNGEELDALAALGFGAI   40 (310)
T ss_pred             CCceeecceecCCCCeEcc----cCCccCHHHHHHHHhcCCceE
Confidence            4788999999999999965    332135666655555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
2nzl_A	392	Crystal Structure Of Human Hydroxyacid Oxidase 1 Le		4e-41
2w0u_A	370	Crystal Structure Of Human Glycolate Oxidase In Com		4e-41
2rdt_A	387	Crystal Structure Of Human Glycolate Oxidase (Go) I		5e-41
1gyl_A	369	Involvement Of Tyr24 And Trp108 In Substrate Bindin		8e-37
1gox_A	370	Refined Structure Of Spinach Glycolate Oxidase At 2		9e-37
1al7_A	359	Three-Dimensional Structures Of Glycolate Oxidase W		9e-37
1tb3_A	352	Crystal Structure Analysis Of Recombinant Rat Kidne		4e-25
3sgz_A	352	High Resolution Crystal Structure Of Rat Long Chain		3e-24
2a7n_A	380	Crystal Structure Of The G81a Mutant Of The Active		1e-20
1huv_A	380	Crystal Structure Of A Soluble Mutant Of The Membra		2e-20
2j6x_A	374	The Crystal Structure Of Lactate Oxidase Length = 3		1e-16
2nli_A	368	Crystal Structure Of The Complex Between L-Lactate		1e-16
2cdh_0	226	Architecture Of The Thermomyces Lanuginosus Fungal		1e-16
2du2_A	374	Crystal Structure Analysis Of The L-Lactate Oxidase		1e-16
1qcw_A	410	Flavocytochrome B2, Arg289lys Mutant Length = 410		2e-16
1fcb_A	511	Molecular Structure Of Flavocytochrome B2 At 2.4 An		7e-16
2oz0_A	511	Mechanistic And Structural Studies Of H373q Flavocy		7e-16
1ldc_A	511	X-Ray Structure Of Two Complexes Of The Y143f Flavo		7e-16
1ltd_A	506	The 2.6 Angstroms Refined Structure Of The Escheric		8e-16
1kbj_A	412	Crystallographic Study Of The Recombinant Flavin-Bi		1e-15
1sze_A	511	L230a Mutant Flavocytochrome B2 With Benzoylformate		2e-15
1szf_A	511	A198g:l230a Mutant Flavocytochrome B2 With Pyruvate		4e-15

>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392

Iteration: 1
 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 117/192 (60%), Gaps = 6/192 (3%)
Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           M+RNV + D   +VLG R   P+ +  +AMQ++AH DGE+AT RA   +   M+LS  +T
Sbjct: 75  MLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWAT 134
Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV    P    WLQ+YI+KDR ++ ++V++AE+ GY AI +T+DT  LG+R  D++
Sbjct: 135 SSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVR 194
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP L + NF            F D       SGL  YVA   D S+ W+D++ L 
Sbjct: 195 NRFKLPPQLRMKNFETSTLSFSPEENFGD------DSGLAAYVAKAIDPSISWEDIKWLR 248
Query: 181 QATKLPIVCKGI 192
           + T LPIV KGI
Sbjct: 249 RLTSLPIVAKGI 260

>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370

Iteration: 1
 Score =  163 bits (413), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 117/192 (60%), Gaps = 6/192 (3%)
Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           M+RNV + D   +VLG R   P+ +  +AMQ++AH DGE+AT RA   +   M+LS  +T
Sbjct: 53  MLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWAT 112
Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV    P    WLQ+YI+KDR ++ ++V++AE+ GY AI +T+DT  LG+R  D++
Sbjct: 113 SSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVR 172
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP L + NF            F D       SGL  YVA   D S+ W+D++ L 
Sbjct: 173 NRFKLPPQLRMKNFETSTLSFSPEENFGD------DSGLAAYVAKAIDPSISWEDIKWLR 226
Query: 181 QATKLPIVCKGI 192
           + T LPIV KGI
Sbjct: 227 RLTSLPIVAKGI 238

>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387

Iteration: 1
 Score =  163 bits (413), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 117/192 (60%), Gaps = 6/192 (3%)
Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           M+RNV + D   +VLG R   P+ +  +AMQ++AH DGE+AT RA   +   M+LS  +T
Sbjct: 70  MLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWAT 129
Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV    P    WLQ+YI+KDR ++ ++V++AE+ GY AI +T+DT  LG+R  D++
Sbjct: 130 SSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVR 189
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP L + NF            F D       SGL  YVA   D S+ W+D++ L 
Sbjct: 190 NRFKLPPQLRMKNFETSTLSFSPEENFGD------DSGLAAYVAKAIDPSISWEDIKWLR 243
Query: 181 QATKLPIVCKGI 192
           + T LPIV KGI
Sbjct: 244 RLTSLPIVAKGI 255

>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369

Iteration: 1
 Score =  149 bits (377), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 119/192 (61%), Gaps = 10/192 (5%)
Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V + D   T+LG +   P+ IAP+AMQK+AH +GE ATARAA     IM LS  +T
Sbjct: 51  ILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWAT 110
Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV +  P    + Q+Y++KDR +  Q+V+RAER+G+ AI +T+DT  LG R  D+K
Sbjct: 111 SSVEEVASTGPGIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 169
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP+L+L NF  +     D         +   SGL+ YVA Q D S+ W DV  L 
Sbjct: 170 NRFVLPPFLTLKNFEGIDLGKMD---------KANDSGLSSYVAGQIDRSLSWKDVAWLQ 220
Query: 181 QATKLPIVCKGI 192
             T LPI+ KG+
Sbjct: 221 TITSLPILVKGV 232

>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370

Iteration: 1
 Score =  149 bits (376), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 119/192 (61%), Gaps = 10/192 (5%)
Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V + D   T+LG +   P+ IAP+AMQK+AH +GE ATARAA     IM LS  +T
Sbjct: 52  ILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWAT 111
Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV +  P    + Q+Y++KDR +  Q+V+RAER+G+ AI +T+DT  LG R  D+K
Sbjct: 112 SSVEEVASTGPGIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 170
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP+L+L NF  +     D         +   SGL+ YVA Q D S+ W DV  L 
Sbjct: 171 NRFVLPPFLTLKNFEGIDLGKMD---------KANDSGLSSYVAGQIDRSLSWKDVAWLQ 221
Query: 181 QATKLPIVCKGI 192
             T LPI+ KG+
Sbjct: 222 TITSLPILVKGV 233

>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359

Iteration: 1
 Score =  149 bits (376), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 121/192 (63%), Gaps = 10/192 (5%)
Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V + D   T+LG +   P+ IAP+AMQK+AH +GE ATARAA     IM LS  +T
Sbjct: 51  ILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWAT 110
Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV +  P    + Q+Y++KDR +  Q+V+RAER+G+ AI +T+DT  LG R  D+K
Sbjct: 111 SSVEEVASTGPGIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 169
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP+L+L NF  +     D+ K      +   SGL+ YVA Q D S+ W DV  L 
Sbjct: 170 NRFVLPPFLTLKNFEGI-----DLGKMD----KANDSGLSSYVAGQIDRSLSWKDVAWLQ 220
Query: 181 QATKLPIVCKGI 192
             T LPI+ KG+
Sbjct: 221 TITSLPILVKGV 232

>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352

Iteration: 1
 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 2   MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
           +R++   D+  T+ G     P+ I+P+A   +A  DGE +TARAA   +   ++S  ++ 
Sbjct: 51  LRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASY 110
Query: 62  SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKN 121
           SLE++ A  P    W Q+Y+  D   + QMVQRAE  G+ A+VIT+DT VLG+R RD +N
Sbjct: 111 SLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRN 170
Query: 122 KFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDD-SVDWDDVRSLV 180
           +  +   + L + R LK+                    T  V   F   S  W+D+  L 
Sbjct: 171 QLNLEANILLKDLRALKEEKP-----------------TQSVPVSFPKASFCWNDLSLLQ 213
Query: 181 QATKLPIVCKGI 192
             T+LPI+ KGI
Sbjct: 214 SITRLPIILKGI 225

>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 2   MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
           +R++   D+  T+ G     P+ I+P+A   +A  DGE +TARAA   +   ++S  ++ 
Sbjct: 51  LRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASY 110
Query: 62  SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKN 121
           SLE++ A  P    W Q+Y+  D   + QMVQRAE  G+ A+VIT+DT VLG+R RD +N
Sbjct: 111 SLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRN 170
Query: 122 KFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDD-SVDWDDVRSLV 180
           +  +   +  A  R LK+                    T  V   F   S  W+D+  L 
Sbjct: 171 QLNLEANILKAALRALKEEKP-----------------TQSVPVLFPKASFCWNDLSLLQ 213
Query: 181 QATKLPIVCKGI 192
             T+LPI+ KGI
Sbjct: 214 SITRLPIILKGI 225

>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 11/189 (5%)
Query: 4   NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSL 63
           +V  R     VLG R   P+ I P+A+       G++A ARAA       +LS  S  S+
Sbjct: 56  DVSRRSLQAEVLGKRQSMPLLIGPTALNGALWPKGDLALARAATKAGIPFVLSTASNMSI 115
Query: 64  EEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKF 123
           E++ A+     LW Q+Y+   R ++  MV +A  +GY+ +V+T D AV G R RDL N+F
Sbjct: 116 EDL-ARQCDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRF 173
Query: 124 TMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQAT 183
            +PP+L+L NF  +     D+ K  D +  E  + L   ++ Q D S +W+ +R L    
Sbjct: 174 KIPPFLTLKNFEGI-----DLGKM-DKANLEMQAAL---MSRQMDASFNWEALRWLRDLW 224
Query: 184 KLPIVCKGI 192
              ++ KG+
Sbjct: 225 PHKLLVKGL 233

>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 11/179 (6%)
Query: 14  VLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPST 73
           VLG R   P+ I P+ +       G++A ARAA       +LS  S  S+E++ A+    
Sbjct: 66  VLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDL-ARQCDG 124
Query: 74  TLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLAN 133
            LW Q+Y+   R ++  MV +A  +GY+ +V+T D AV G R RDL N+F +PP+L+L N
Sbjct: 125 DLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKN 183
Query: 134 FRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGI 192
           F  +     D+ K  D +  E  + L   ++ Q D S +W+ +R L       ++ KG+
Sbjct: 184 FEGI-----DLGKM-DKANLEMQAAL---MSRQMDASFNWEALRWLRDLWPHKLLVKGL 233

>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           + ++V   D+   +LG + + P  +AP A   LAH   E  TARA      IM +S  S 
Sbjct: 67  LAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG 126
Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
            + EE+         W Q+Y+ KD   +  ++  A+  G +AI++T D+ V G+R RD+K
Sbjct: 127 ATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVK 186
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           NKF  P  + +   R L+   E +S   +I           Y A++    +   D+  + 
Sbjct: 187 NKFVYPFGMPIVQ-RYLRGTAEGMS-LNNI-----------YGASK--QKISPRDIEEIA 231
Query: 181 QATKLPIVCKGI 192
             + LP+  KGI
Sbjct: 232 AHSGLPVFVKGI 243

>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           + ++V   D+   +LG + + P  +AP A   LAH   E  TARA      IM +S  S 
Sbjct: 61  LAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG 120
Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
            + EE+         W Q+Y+ KD   +  ++  A+  G +AI++T D+ V G+R RD+K
Sbjct: 121 ATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVK 180
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           NKF  P  + +   R L+   E +S   +I           Y A++    +   D+  + 
Sbjct: 181 NKFVYPFGMPIVQ-RYLRGTAEGMS-LNNI-----------YGASK--QKISPRDIEEIA 225
Query: 181 QATKLPIVCKGI 192
             + LP+  KGI
Sbjct: 226 GHSGLPVFVKGI 237

>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 13  TVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPS 72
           T+LG +   P+ IAP+AMQK+AH +GE ATARAA     IM LS  +T+S+EEV +  P 
Sbjct: 3   TILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPG 62
Query: 73  TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITM 107
              + Q+Y++KDR +  Q+V+RAER+G+ AI +T+
Sbjct: 63  IR-FFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 96

>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           + ++V   D+   +LG + + P  +AP A   LAH   E  TARA      IM +S  S 
Sbjct: 67  LAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG 126
Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
            + EE+         W Q+Y+ KD   +  ++  A+  G +AI++T D+ V G+R RD+K
Sbjct: 127 ATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVK 186
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           NKF  P  + +   R L+   E +S   +I           Y A++    +   D+  + 
Sbjct: 187 NKFVYPFGMPIVQ-RYLRGTAEGMS-LNNI-----------YGASK--QKISPRDIEEIA 231
Query: 181 QATKLPIVCKGI 192
             + LP+  KGI
Sbjct: 232 GHSGLPVFVKGI 243

>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 20/184 (10%)
Query: 14  VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
           +LG+    P  ++ +A+ KL +  +GE   AR  G  +     ++S +++ S EE+    
Sbjct: 82  MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 141
Query: 71  PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
           PS     W Q+Y+  DR ++  +V+  E+ G  A+ +T+D   LG + +D+K KF+    
Sbjct: 142 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQKEKDMKLKFSN--- 198
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
            + A F+ +K+ N            E S G +  ++   D S+ W D+  L + TKLPIV
Sbjct: 199 -TKAGFKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 246
Query: 189 CKGI 192
            KG+
Sbjct: 247 IKGV 250

>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 14  VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
           +LG+    P  ++ +A+ KL +  +GE   AR  G  +     ++S +++ S EE+    
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 71  PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
           PS     W Q+Y+  DR ++  +V+  E+ G  A+ +T+D   LG R +D+K KF+    
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 299
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
            + A  + +K+ N            E S G +  ++   D S+ W D+  L + TKLPIV
Sbjct: 300 -TKAGPKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 347
Query: 189 CKGI 192
            KG+
Sbjct: 348 IKGV 351

>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 14  VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
           +LG+    P  ++ +A+ KL +  +GE   AR  G  +     ++S +++ S EE+    
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 71  PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
           PS     W Q+Y+  DR ++  +V+  E+ G  A+ +T+D   LG R +D+K KF+    
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 299
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
            + A  + +K+ N            E S G +  ++   D S+ W D+  L + TKLPIV
Sbjct: 300 -TKAGPKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 347
Query: 189 CKGI 192
            KG+
Sbjct: 348 IKGV 351

>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 14  VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
           +LG+    P  ++ +A+ KL +  +GE   AR  G  +     ++S +++ S EE+    
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 71  PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
           PS     W Q+Y+  DR ++  +V+  E+ G  A+ +T+D   LG R +D+K KF+    
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 299
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
            + A  + +K+ N            E S G +  ++   D S+ W D+  L + TKLPIV
Sbjct: 300 -TKAGPKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 347
Query: 189 CKGI 192
            KG+
Sbjct: 348 IKGV 351

>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 20/184 (10%)
Query: 14  VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
           +LG+    P  ++ +A+ KL +  +GE   AR  G  +     ++S +++ S EE+    
Sbjct: 178 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 237
Query: 71  PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
           PS     W Q+Y+  DR ++  +V+  E+ G  A+ +T+D   LG R +D+K KF+    
Sbjct: 238 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 294
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
            + A  + +K+ N           EE S G +  ++   D S+ W D+  L + TKLPIV
Sbjct: 295 -TKAGPKAMKKTN----------VEE-SQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 342
Query: 189 CKGI 192
            KG+
Sbjct: 343 IKGV 346

>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 14  VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
           +LG+    P  ++ +A+ KL +  +GE   AR  G  +     ++S +++ S EE+    
Sbjct: 84  MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 143
Query: 71  PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
           PS     W Q+Y+  DR ++  +V+  E+ G  A+ +T+D   LG R +D+K KF+    
Sbjct: 144 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 200
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
            + A  + +K+ N            E S G +  ++   D S+ W D+  L + TKLPIV
Sbjct: 201 -TKAGPKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 248
Query: 189 CKGI 192
            KG+
Sbjct: 249 IKGV 252

>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 20/184 (10%)
Query: 14  VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
           +LG+    P  ++ +A+ KL +  +GE   AR  G  +     ++S  ++ S EE+    
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEIIEAA 242
Query: 71  PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
           PS     W Q+Y+  DR ++  +V+  E+ G  A+ +T+D   LG R +D+K KF+    
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 299
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
            + A  + +K+ N            E S G +  ++   D S+ W D+  L + TKLPIV
Sbjct: 300 -TKAGPKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 347
Query: 189 CKGI 192
            KG+
Sbjct: 348 IKGV 351

>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 20/184 (10%)
Query: 14  VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
           +LG+    P  ++ + + KL +  +GE   AR  G  +     ++S  ++ S EE+    
Sbjct: 183 MLGSHVDVPFYVSATGLCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEIIEAA 242
Query: 71  PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
           PS     W Q+Y+  DR ++  +V+  E+ G  A+ +T+D   LG R +D+K KF+    
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 299
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
            + A  + +K+ N            E S G +  ++   D S+ W D+  L + TKLPIV
Sbjct: 300 -TKAGPKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 347
Query: 189 CKGI 192
            KG+
Sbjct: 348 IKGV 351

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	2e-79
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	8e-79
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	2e-75
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	7e-74
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	8e-74
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	1e-64
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	1e-17
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	3e-10
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	5e-08
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	3e-05

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392

 Score =  240 bits (616), Expect = 2e-79
 Identities = 81/192 (42%), Positives = 117/192 (60%), Gaps = 6/192 (3%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           M+RNV + D   +VLG R   P+ +  +AMQ++AH DGE+AT RA   +   M+LS  +T
Sbjct: 75  MLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWAT 134

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV    P    WLQ+YI+KDR ++ ++V++AE+ GY AI +T+DT  LG+R  D++
Sbjct: 135 SSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVR 194

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP L + NF            F D       SGL  YVA   D S+ W+D++ L 
Sbjct: 195 NRFKLPPQLRMKNFETSTLSFSPEENFGD------DSGLAAYVAKAIDPSISWEDIKWLR 248

Query: 181 QATKLPIVCKGI 192
           + T LPIV KGI
Sbjct: 249 RLTSLPIVAKGI 260

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370

 Score =  238 bits (610), Expect = 8e-79
 Identities = 83/192 (43%), Positives = 119/192 (61%), Gaps = 10/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V + D   T+LG +   P+ IAP+AMQK+AH +GE ATARAA     IM LS  +T
Sbjct: 52  ILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWAT 111

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV +  P    + Q+Y++KDR +  Q+V+RAER+G+ AI +T+DT  LG R  D+K
Sbjct: 112 SSVEEVASTGPGI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 170

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP+L+L NF  +     D +           SGL+ YVA Q D S+ W DV  L 
Sbjct: 171 NRFVLPPFLTLKNFEGIDLGKMDKAN---------DSGLSSYVAGQIDRSLSWKDVAWLQ 221

Query: 181 QATKLPIVCKGI 192
             T LPI+ KG+
Sbjct: 222 TITSLPILVKGV 233

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352

 Score =  229 bits (586), Expect = 2e-75
 Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 16/192 (8%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
            +R++   D+  T+ G     P+ I+P+A   +A  DGE +TARAA   +   ++S  ++
Sbjct: 50  YLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYAS 109

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
            SLE++ A  P    W Q+Y+  D   + QMVQRAE  G+ A+VIT+DT VLG+R RD +
Sbjct: 110 YSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKR 169

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+  +   +  A  R LK+                              S  W+D+  L 
Sbjct: 170 NQLNLEANILKAALRALKEEK----------------PTQSVPVLFPKASFCWNDLSLLQ 213

Query: 181 QATKLPIVCKGI 192
             T+LPI+ KGI
Sbjct: 214 SITRLPIILKGI 225

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368

 Score =  225 bits (577), Expect = 7e-74
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 15/192 (7%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           + ++V   D+   +LG + + P  +AP A   LAH   E  TARA      IM +S  S 
Sbjct: 61  LAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG 120

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
            + EE+         W Q+Y+ KD   +  ++  A+  G +AI++T D+ V G+R RD+K
Sbjct: 121 ATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVK 180

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           NKF  P  + +                             + +       +   D+  + 
Sbjct: 181 NKFVYPFGMPIVQRYLRGTA---------------EGMSLNNIYGASKQKISPRDIEEIA 225

Query: 181 QATKLPIVCKGI 192
             + LP+  KGI
Sbjct: 226 GHSGLPVFVKGI 237

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380

 Score =  226 bits (578), Expect = 8e-74
 Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 11/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
            + +V  R     VLG R   P+ I P+ +       G++A ARAA       +LS  S 
Sbjct: 53  RLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASN 112

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
            S+E++ A+     LW Q+Y+   R ++  MV +A  +GY+ +V+T D AV G R RDL 
Sbjct: 113 MSIEDL-ARQCDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLH 170

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP+L+L NF  +     D +                 ++ Q D S +W+ +R L 
Sbjct: 171 NRFKIPPFLTLKNFEGIDLGKMDKANL---------EMQAALMSRQMDASFNWEALRWLR 221

Query: 181 QATKLPIVCKGI 192
                 ++ KG+
Sbjct: 222 DLWPHKLLVKGL 233

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511

 Score =  206 bits (525), Expect = 1e-64
 Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 20/197 (10%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHA---DGEVATARAAGMMDAIMILSL 57
           ++ +V   D    +LG+    P  ++ +A+ KL +    + +VA     G+     ++S 
Sbjct: 170 ILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMIST 229

Query: 58  MSTTSLEEVR--AQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSR 115
           +++ S EE+   A +     W Q+Y+  DR ++  +V+  E+ G  A+ +T+D   LG R
Sbjct: 230 LASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQR 289

Query: 116 YRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDD 175
            +D+K KF+       A  + +K+ N +            S G +  ++   D S+ W D
Sbjct: 290 EKDMKLKFSNTK----AGPKAMKKTNVEE-----------SQGASRALSKFIDPSLTWKD 334

Query: 176 VRSLVQATKLPIVCKGI 192
           +  L + TKLPIV KG+
Sbjct: 335 IEELKKKTKLPIVIKGV 351

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365

 Score = 78.7 bits (194), Expect = 1e-17
 Identities = 24/188 (12%), Positives = 48/188 (25%), Gaps = 34/188 (18%)

Query: 3   RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTS 62
            ++ + D      G  +  P  I           +     A+ A     + +    S   
Sbjct: 69  YDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYS--- 125

Query: 63  LEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYR-DLKN 121
                               K+   +   V+++      A  I +D              
Sbjct: 126 -----------------TALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRDLQ 168

Query: 122 KFTMPPYLSLA----------NFRNLKQHNEDISKFRD--ISAEECSSGLTDYVANQFDD 169
              +  +++L            FR+ K+H  D +K        +E   G+         D
Sbjct: 169 PLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAID 228

Query: 170 S-VDWDDV 176
             V   D+
Sbjct: 229 LGVKTVDI 236

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 3   RNVCDRDSGLTVLGTRYRCPVGIAPSAMQ-KLAHADGEVATARAAGMMDAIMILSLMST- 60
             +   D    +       P+ I            +   + ARAA      + +    + 
Sbjct: 38  LALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA 97

Query: 61  -------TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTA 110
                   S E VR +NP+  ++  +      A + + V   E  G +A+ I ++  
Sbjct: 98  LKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAV---EMIGANALQIHLNVI 151

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 20/192 (10%), Positives = 51/192 (26%), Gaps = 38/192 (19%)

Query: 3   RNVCDRDSGLTVLGTRYRCPVGIAP-SAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
            +  + ++           PV +   +  +       +   A  A      M +      
Sbjct: 42  ISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINK-IIAEVAEKFGIPMGVGSQR-V 99

Query: 62  SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKN 121
           ++E+  A+                  S  +V++   +      + M   V G   ++ ++
Sbjct: 100 AIEKAEARE-----------------SFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQD 142

Query: 122 KFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQ 181
              M    ++A   N  Q                   +              + +R + +
Sbjct: 143 AIQMIEADAIAVHLNPAQ------------------EVFQPEGEPEYQIYALEKLRDISK 184

Query: 182 ATKLPIVCKGIP 193
              +PI+ K   
Sbjct: 185 ELSVPIIVKESG 196

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 8/116 (6%)

Query: 3   RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTS 62
             + + D     LG   + P  I      +       +A A AA  +   M+L       
Sbjct: 41  LALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILL 100

Query: 63  LEE-------VRAQNPSTTLWLQMYIFKDRALSLQMVQRA-ERSGYSAIVITMDTA 110
                     VR   P   L   + + + R      + R  E     A+   ++  
Sbjct: 101 ERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPL 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	100.0
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	100.0
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	100.0
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	100.0
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	100.0
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	100.0
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	99.79
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	99.69
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	99.66
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	99.65
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	99.59
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	99.42
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	99.19
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	98.94
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.93
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	98.91
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	98.33
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	98.3
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	98.26
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	98.01
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	97.99
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	97.45
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	96.79
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	96.69
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	96.38
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	95.64
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	95.49
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	95.43
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	94.45
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	94.34
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	94.29
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	90.18
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	85.48
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	84.43

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=100.00  E-value=1.2e-54  Score=381.39  Aligned_cols=177  Identities=36%  Similarity=0.559  Sum_probs=157.0

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      ||+||+++||+|+|||+++++||+|||+|+++|+||+||+++||||+++|++|++||+|++|+|||+++.+++++|||||
T Consensus        50 vl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY  129 (352)
T 3sgz_A           50 YLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLY  129 (352)
T ss_dssp             CSSCCSSCBCCEEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECC
T ss_pred             ccCCCCCCCCceEECCcccCCcceechHHHHHhcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +++||+.++++|+|||+|||+|||||||+|+.|+||+|+||+|++|++++++++.+....             .+..+. 
T Consensus       130 ~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~-------------~~~~~~-  195 (352)
T 3sgz_A          130 MKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEE-------------KPTQSV-  195 (352)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC--------------------------
T ss_pred             cCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccc-------------cccchh-
Confidence            999999999999999999999999999999999999999999999988888776542100             001111 


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                        ....++++++|++|+|||+.|++||++|||.
T Consensus       196 --~~~~~d~~~~w~~i~~lr~~~~~PvivK~v~  226 (352)
T 3sgz_A          196 --PVLFPKASFCWNDLSLLQSITRLPIILKGIL  226 (352)
T ss_dssp             -----CCCTTCCHHHHHHHHHHCCSCEEEEEEC
T ss_pred             --hhhccCCCCCHHHHHHHHHhcCCCEEEEecC
Confidence              1256799999999999999999999999973

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=100.00  E-value=2.6e-43  Score=313.66  Aligned_cols=186  Identities=42%  Similarity=0.729  Sum_probs=158.1

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+|++++||+|+|||+++++||+|||||++++.||+||.++|++|+++|++|++|++++.++|||++..++++.|||||
T Consensus        75 ~L~~~~~~d~st~i~G~~l~~Pi~iAPmg~~~l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy  154 (392)
T 2nzl_A           75 MLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLY  154 (392)
T ss_dssp             CSSCCTTCBCCEEETTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEEC
T ss_pred             hccCCcCCCcceEECCEecCCceEeccccccccccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999998877789999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +++|++.+.++++||+++||++|+||+|+|+.|+|++|+||+|.+|++++++|+.+....  +.+ ++|.   .++.+..
T Consensus       155 ~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~--~~p-~~~~---~~g~~~~  228 (392)
T 2nzl_A          155 IYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLS--FSP-EENF---GDDSGLA  228 (392)
T ss_dssp             CBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------------CHH
T ss_pred             ecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcc--cCc-cccc---cCcchHH
Confidence            999999999999999999999999999999999999999999999999877775432110  000 0110   1122344


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGI  192 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI  192 (193)
                      .++...+++.++|++|+|||+.|++||++|||
T Consensus       229 ~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv  260 (392)
T 2nzl_A          229 AYVAKAIDPSISWEDIKWLRRLTSLPIVAKGI  260 (392)
T ss_dssp             HHHHHHBCTTCCHHHHHHHC--CCSCEEEEEE
T ss_pred             HHHhhcCChHHHHHHHHHHHHhhCCCEEEEec
Confidence            56777789999999999999999999999997

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=100.00  E-value=3.7e-41  Score=297.54  Aligned_cols=177  Identities=29%  Similarity=0.486  Sum_probs=141.0

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+|++++||+|+|||+++++||+|||||++++.||+||.++|++|+++|++|++|++++.++|||++..++++.|||||
T Consensus        61 ~L~~~~~~d~st~i~G~~l~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy  140 (368)
T 2nli_A           61 LAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIY  140 (368)
T ss_dssp             CCCCCSCCCCCEEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEEC
T ss_pred             ccCCCccCCcceEECCEecCCceeecchhhccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEe
Confidence            58899999999999999999999999999999999999999999999999999999999999999988766789999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +++|++.+.++++||+++||++|+||+|+|+.|+|++|+||+|.+|  ++.+++.....         +  ... +..+ 
T Consensus       141 ~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p--~~~~~~~~~~~---------~--~~~-g~~l-  205 (368)
T 2nli_A          141 MAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP--FGMPIVQRYLR---------G--TAE-GMSL-  205 (368)
T ss_dssp             CBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CC--SCCHHHHHHHT---------T--SGG-GC---
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCc--chhhhhhcccc---------c--CCC-CchH-
Confidence            9999999999999999999999999999999999999999999888  44344321000         0  000 1111 


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGI  192 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI  192 (193)
                      .++....++.++|++|+|||+.|++||++|||
T Consensus       206 ~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v  237 (368)
T 2nli_A          206 NNIYGASKQKISPRDIEEIAGHSGLPVFVKGI  237 (368)
T ss_dssp             ---CTTBCSBCCHHHHHHHHHHSSSCEEEEEE
T ss_pred             HhhhhccCchhhHHHHHHHHHHcCCCEEEEcC
Confidence            23333458999999999999999999999997

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=100.00  E-value=3e-39  Score=285.25  Aligned_cols=183  Identities=45%  Similarity=0.738  Sum_probs=159.3

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+|++++||+|+|||+++++||+|||||+++++||+||.++|++|+++|++|++|++++.++|||+++.+ ++.|||||
T Consensus        52 ~l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~-~~~~~QLy  130 (370)
T 1gox_A           52 ILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQLY  130 (370)
T ss_dssp             CSCCCSCCBCCEEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCC-CCEEEEEC
T ss_pred             ccCCCCCCCCceEECCcccCCceeEcccchhhhccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcC-CCceEEEe
Confidence            58999999999999999999999999999999999999999999999999999999999999999998876 78999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +.+|++.+.++++||+++||++|+||+|+|+.|+|++|+|++|.+|.+++.+++.+.....        ... ..+..+.
T Consensus       131 ~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~--------~~~-~~g~~~~  201 (370)
T 1gox_A          131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGK--------MDK-ANDSGLS  201 (370)
T ss_dssp             CBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC------------------HH
T ss_pred             cCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhc--------ccc-ccCccHH
Confidence            9999999999999999999999999999999999999999999999888777664321100        000 1122333


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      .++....++.++|++|+|+|+.|++|+++||+.
T Consensus       202 ~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~  234 (370)
T 1gox_A          202 SYVAGQIDRSLSWKDVAWLQTITSLPILVKGVI  234 (370)
T ss_dssp             HHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCC
T ss_pred             HHHHhhcCccchHHHHHHHHHHhCCCEEEEecC
Confidence            456667799999999999999999999999973

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=100.00  E-value=2.4e-39  Score=286.90  Aligned_cols=181  Identities=31%  Similarity=0.543  Sum_probs=155.8

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+|++++||+|+|||+++++||+|||+|+++++||++|.++|++|+++|++|++|+.++.++|||++. ++++.|||||
T Consensus        53 ~L~~~~~~d~st~i~G~~l~~Pv~iap~~~~~~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~-~~~~~~fQly  131 (380)
T 1p4c_A           53 RLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQ-CDGDLWFQLY  131 (380)
T ss_dssp             CSCCCSSCBCCEEETTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHH-CCSCEEEEEC
T ss_pred             ccCCCccCcceeEECCeecCCceEecCccccccCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhc-cCCCeEEEEE
Confidence            589999999999999999999999999999999999999999999999999999999999999999876 4678999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +++ ++.+.++++||+++||++++||||+|+.|+|++|+|++|.+|..++..++...        .+.++.. .+.....
T Consensus       132 ~~~-~~~~~~~i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~--------~~~~l~~-~~~~ala  201 (380)
T 1p4c_A          132 VIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGI--------DLGKMDK-ANLEMQA  201 (380)
T ss_dssp             CSS-HHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTC--------CCSCCSS-TTTTTHH
T ss_pred             ech-HHHHHHHHHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhh--------hhhccCc-ccchHHH
Confidence            999 99999999999999999999999999999999999999988877666554210        0001100 1112233


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGI  192 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI  192 (193)
                      .++...++|.++|++|+|+|+.|++|+++|||
T Consensus       202 ~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkgv  233 (380)
T 1p4c_A          202 ALMSRQMDASFNWEALRWLRDLWPHKLLVKGL  233 (380)
T ss_dssp             HHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEE
T ss_pred             HHHHhhcCccccHHHHHHHHHhcCCCEEEEec
Confidence            44555679999999999999999999999997

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=100.00  E-value=1.6e-39  Score=297.63  Aligned_cols=178  Identities=29%  Similarity=0.485  Sum_probs=152.9

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCc-hHHHHHHHHHhc--cCceeeeccCccccHHHHHhhC--CCCce
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAGM--MDAIMILSLMSTTSLEEVRAQN--PSTTL   75 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~-~gE~~~araA~~--~g~~~~lst~ss~s~eei~~~~--~~~~~   75 (193)
                      +|+|++++||+|+|||+++++||+||||++++++|| ++|+++|++|++  +|++|++|++++.|+|+|++..  +.++.
T Consensus       170 ~L~dv~~~d~st~i~G~~l~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~  249 (511)
T 1kbi_A          170 ILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQ  249 (511)
T ss_dssp             CSCCCSSCBCCEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCE
T ss_pred             cccCcccccCccccCCccCCCCeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCe
Confidence            689999999999999999999999999999999999 999999999999  9999999999999999998775  36789


Q ss_pred             EEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccC
Q psy13219         76 WLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEEC  155 (193)
Q Consensus        76 wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (193)
                      |||||+.+|++.++++++||+++||++|+||||+|+.|+||+|+||+|.+|... ...+... .            . ..
T Consensus       250 ~~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~-~~~~~g~-~------------~-~~  314 (511)
T 1kbi_A          250 WYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAG-PKAMKKT-N------------V-EE  314 (511)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC--------CC-C------------C-SS
T ss_pred             EEEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCccc-ccccccc-c------------c-cc
Confidence            999999999999999999999999999999999999999999999999887531 1111000 0            0 01


Q ss_pred             CcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        156 SSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      ..+...++...+++.++|++|+|||+.|++||++|||+
T Consensus       315 ~~g~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~  352 (511)
T 1kbi_A          315 SQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ  352 (511)
T ss_dssp             CCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEEC
T ss_pred             cccHHHHHhhccChHhHHHHHHHHHHHhCCcEEEEeCC
Confidence            12334455566799999999999999999999999974

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=99.79  E-value=1.1e-20  Score=167.32  Aligned_cols=158  Identities=14%  Similarity=0.162  Sum_probs=112.1

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeecc--------CccccHHHHHhhCCC
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSL--------MSTTSLEEVRAQNPS   72 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst--------~ss~s~eei~~~~~~   72 (193)
                      +++|++++|++|+|+|.+++.||++||++  ++.|+    ++|+|++++|.++++|+        .++.++|||++....
T Consensus        48 ~~~~~~~vdlst~l~g~~l~~Pii~Apm~--g~~~~----~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~  121 (393)
T 2qr6_A           48 RTRSSKDVDTTWHIDAYKFDLPFMNHPSD--ALASP----EFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEE  121 (393)
T ss_dssp             CCCCGGGCBCCEEETTEEESSSEEECCCT--TTCCH----HHHHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCChhHCCceeEEcccccCCCeEeCCCC--CcccH----HHHHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHh
Confidence            46799999999999999999999999998  67776    59999999999999998        667889999876432


Q ss_pred             ------CceEEEEEeec-CHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccch
Q psy13219         73 ------TTLWLQMYIFK-DRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDIS  145 (193)
Q Consensus        73 ------~~~wfQlY~~~-dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~  145 (193)
                            ...|||+|+.+ |++.+.++++|++++|+.+++     ++.+++..+..+.+.           ......    
T Consensus       122 ~d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~~v~~-----~v~~~~~~e~a~~~~-----------~agad~----  181 (393)
T 2qr6_A          122 GDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAV-----RVSPQNVREIAPIVI-----------KAGADL----  181 (393)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCCEE-----EECTTTHHHHHHHHH-----------HTTCSE----
T ss_pred             cCCCccchhhhhcccccCCHHHHHHHHHHHhhcCCeEEE-----EeCCccHHHHHHHHH-----------HCCCCE----
Confidence                  46799999766 999999999999999999877     233445554443220           000000    


Q ss_pred             hhcccccccCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        146 KFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                          +.- ... .   .......+..+|++|+|+++.|+.||++|||.
T Consensus       182 ----i~i-~~~-~---~~~~~~~~~~~~~~i~~l~~~~~~pvi~ggi~  220 (393)
T 2qr6_A          182 ----LVI-QGT-L---ISAEHVNTGGEALNLKEFIGSLDVPVIAGGVN  220 (393)
T ss_dssp             ----EEE-ECS-S---CCSSCCCC-----CHHHHHHHCSSCEEEECCC
T ss_pred             ----EEE-eCC-c---cccccCCCcccHHHHHHHHHhcCCCEEECCcC
Confidence                000 000 0   00112234459999999999999999999973

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=99.69  E-value=5.5e-17  Score=142.96  Aligned_cols=137  Identities=15%  Similarity=0.190  Sum_probs=91.1

Q ss_pred             cCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHH-------HhhCCCCce
Q psy13219          3 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV-------RAQNPSTTL   75 (193)
Q Consensus         3 ~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei-------~~~~~~~~~   75 (193)
                      .|++++||+|+|||+++++||+|+||++....+++.+.++|++|+++|++|++|+++. .+|+-       .+..|+++.
T Consensus        69 ~~~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~-~le~~~~~~~~v~r~~P~~~~  147 (365)
T 3sr7_A           69 YDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYST-ALKNPDDTSYQVKKSRPHLLL  147 (365)
T ss_dssp             SCGGGCCCCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------------------------CCE
T ss_pred             CCcccccceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeecccccc-cccCccccceEehhhCCCCcE
Confidence            6788999999999999999999999999888899999999999999999999999985 34432       222244444


Q ss_pred             EEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccC
Q psy13219         76 WLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEEC  155 (193)
Q Consensus        76 wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (193)
                      +-.|-.....   ++..+.++.+|+.||.+++|...    |  .    ..|                           . 
T Consensus       148 ianig~~~~~---e~~~~~ve~~~adal~ihln~~q----e--~----~~p---------------------------~-  186 (365)
T 3sr7_A          148 ATNIGLDKPY---QAGLQAVRDLQPLFLQVHINLMQ----E--L----LMP---------------------------E-  186 (365)
T ss_dssp             EEEEETTSCH---HHHHHHHHHHCCSCEEEEECHHH----H--H----TSS---------------------------S-
T ss_pred             EEEeCCCCCH---HHHHHHHHhcCCCEEEEeccccc----c--c----cCC---------------------------C-
Confidence            4433322222   34566667899999999999531    1  0    011                           0 


Q ss_pred             CcchhhHhhhhCCCCC-CH-HHHHHHHhcCCCCEEEecC
Q psy13219        156 SSGLTDYVANQFDDSV-DW-DDVRSLVQATKLPIVCKGI  192 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~-tW-~di~wlr~~~~lPivlKGI  192 (193)
                                 -++.+ +| +.|+|||+.|+.||++|||
T Consensus       187 -----------Gd~~~~~~~~~I~~l~~~~~~PVivK~v  214 (365)
T 3sr7_A          187 -----------GEREFRSWKKHLSDYAKKLQLPFILKEV  214 (365)
T ss_dssp             -----------SCCCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             -----------CCCcHHHHHHHHHHHHHhhCCCEEEEEC
Confidence                       03344 68 6899999999999999987

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=99.66  E-value=1.3e-17  Score=144.69  Aligned_cols=144  Identities=17%  Similarity=0.196  Sum_probs=95.4

Q ss_pred             CCc--CCCCCCCcceECCceeCCceeecchhccccCCchHH---HHHHHHHhccCceeeeccCccccHHHHHhhCCCCce
Q psy13219          1 MMR--NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGE---VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTL   75 (193)
Q Consensus         1 vL~--dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE---~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~   75 (193)
                      +|+  |++++|++|+|||++++.||++||+++   .|+++|   .++|++|+++|++|++|++++. +|+.     +...
T Consensus        37 ~l~~~~~~~~d~~~~i~g~~l~~P~~iapm~g---~~~~~~~~~~~la~~a~~~G~~~~~~~~~~~-le~~-----~~~~  107 (332)
T 1vcf_A           37 ALAGLALSEVDLTTPFLGKTLKAPFLIGAMTG---GEENGERINLALAEAAEALGVGMMLGSGRIL-LERP-----EALR  107 (332)
T ss_dssp             TTCCCCGGGCCCCEEETTEEESSSEEECCCC------CCHHHHHHHHHHHHHHHTCEEEEEECHHH-HHCT-----TTHH
T ss_pred             hCCCCCCCCCCcceEECCcccCCceEEecccc---CCcchhHHHHHHHHHHHHcCCCEEeCCchhc-ccCC-----Cccc
Confidence            466  788999999999999999999999874   377766   8999999999999999999886 7653     4567


Q ss_pred             EEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccC
Q psy13219         76 WLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEEC  155 (193)
Q Consensus        76 wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (193)
                      |||+   +|++                    +|.|+.|+|+.+...++... . ............        +.  ..
T Consensus       108 ~~ql---~~~~--------------------~d~pv~~~~~~~q~~~~~~~-~-~~~a~~~~~~~a--------~~--i~  152 (332)
T 1vcf_A          108 SFRV---RKVA--------------------PKALLIANLGLAQLRRYGRD-D-LLRLVEMLEADA--------LA--FH  152 (332)
T ss_dssp             HHCC---TTTC--------------------SSSCEEEEEEGGGGGTCCHH-H-HHHHHHHHTCSE--------EE--EE
T ss_pred             eEEe---eccC--------------------CCceeecccChhhhhccChH-H-HHHHHhhcCCCc--------ee--ec
Confidence            9996   4432                    78888888886655443211 0 011000000000        00  00


Q ss_pred             CcchhhHhhhhCCCCCC----HHHHHHHHhcCCCCEEEecC
Q psy13219        156 SSGLTDYVANQFDDSVD----WDDVRSLVQATKLPIVCKGI  192 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~t----W~di~wlr~~~~lPivlKGI  192 (193)
                      .......+.   ++..+    |+.|+|+|+ |+.||++|+|
T Consensus       153 ~n~~~~~~~---~~~~~~~~~~~~i~~vr~-~~~Pv~vK~v  189 (332)
T 1vcf_A          153 VNPLQEAVQ---RGDTDFRGLVERLAELLP-LPFPVMVKEV  189 (332)
T ss_dssp             CCHHHHHHT---TSCCCCTTHHHHHHHHCS-CSSCEEEECS
T ss_pred             cchHHHHhc---CCCccHHHHHHHHHHHHc-CCCCEEEEec
Confidence            000011111   44444    899999999 9999999986

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=99.65  E-value=3.4e-16  Score=136.38  Aligned_cols=139  Identities=17%  Similarity=0.202  Sum_probs=102.1

Q ss_pred             CCc--CCCCCCCcceECCceeCCceeecch-hccccCCchHHHHHHHHHhccCceeeeccCccccHHH---------HHh
Q psy13219          1 MMR--NVCDRDSGLTVLGTRYRCPVGIAPS-AMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEE---------VRA   68 (193)
Q Consensus         1 vL~--dv~~~d~~t~~lG~~~~~P~~iaP~-g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~ee---------i~~   68 (193)
                      +|+  |++++|++|+|||++++.||++||+ |+++..++++|.++|++|++.|++|++|++++. +|+         +..
T Consensus        34 ~l~~~~~~~~d~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~-l~~~~~~~~~~~~~~  112 (349)
T 1p0k_A           34 SLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA-LKDPSERLSYEIVRK  112 (349)
T ss_dssp             SCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT-TTCHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc-ccCcccccceehhhh
Confidence            466  7789999999999999999999997 656334577899999999999999999998764 433         333


Q ss_pred             hCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhc
Q psy13219         69 QNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFR  148 (193)
Q Consensus        69 ~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~  148 (193)
                      ..++.+.+.|+....+.+...   +.++.+|+.+|.++++.|.          .+..|                      
T Consensus       113 ~~~~~pv~~~i~~~~~~~~~~---~~~~~~gad~i~i~~~~~~----------~~~~~----------------------  157 (349)
T 1p0k_A          113 ENPNGLIFANLGSEATAAQAK---EAVEMIGANALQIHLNVIQ----------EIVMP----------------------  157 (349)
T ss_dssp             HCSSSCEEEEEETTCCHHHHH---HHHHHTTCSEEEEEECTTT----------TC-------------------------
T ss_pred             hCCCceeEEeecCCCCHHHHH---HHHHhcCCCeEEecccchh----------hhcCC----------------------
Confidence            445678888887544554433   4457789999999998762          11000                      


Q ss_pred             ccccccCCcchhhHhhhhCCCCC--CHHHHHHHHhcCCCCEEEecC
Q psy13219        149 DISAEECSSGLTDYVANQFDDSV--DWDDVRSLVQATKLPIVCKGI  192 (193)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~--tW~di~wlr~~~~lPivlKGI  192 (193)
                                       ..++.+  .|+.|+|+|+.++.||++||+
T Consensus       158 -----------------~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~  186 (349)
T 1p0k_A          158 -----------------EGDRSFSGALKRIEQICSRVSVPVIVKEV  186 (349)
T ss_dssp             ----------------------CTTHHHHHHHHHHHCSSCEEEEEE
T ss_pred             -----------------CCCcchHHHHHHHHHHHHHcCCCEEEEec
Confidence                             002333  258899999999999999975

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=99.59  E-value=1.6e-15  Score=133.34  Aligned_cols=99  Identities=15%  Similarity=-0.025  Sum_probs=86.1

Q ss_pred             CcCCC--CCC--CcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEE
Q psy13219          2 MRNVC--DRD--SGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWL   77 (193)
Q Consensus         2 L~dv~--~~d--~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wf   77 (193)
                      +++++  ++|  ++|+|+|.+++.||++|||      |+.+|.++|+|++++|.++++|+.  .|+||+++... ..+||
T Consensus        20 ~~~~~r~~vd~~~~t~l~g~~l~~Pii~ApM------~~vte~~lA~A~a~~Gg~gvi~~~--~s~ee~~~~i~-~~~~~   90 (361)
T 3r2g_A           20 NHHESRRVVETTSTDRLGKLTLNLPVISANM------DTITESNMANFMHSKGAMGALHRF--MTIEENIQEFK-KCKGP   90 (361)
T ss_dssp             CCSCTTCCCCCCEECTTSSCEESSCEEECCS------TTTCSHHHHHHHHHTTCEEBCCSC--SCHHHHHHHHH-TCCSC
T ss_pred             CCCCccccccceeeEEECCEEcCCCEEECCC------CCchHHHHHHHHHHcCCCEEEeCC--CCHHHHHHHHh-hcceE
Confidence            56666  755  5559999999999999996      788999999999999999999974  89999988764 35799


Q ss_pred             EEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219         78 QMYIFKDRALSLQMVQRAERSGYSAIVITMDTAV  111 (193)
Q Consensus        78 QlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv  111 (193)
                      |.|...+++.+.++++++.++|++  +|++|++.
T Consensus        91 ~~~~~g~~~~~~e~~~~a~~aGvd--vI~id~a~  122 (361)
T 3r2g_A           91 VFVSVGCTENELQRAEALRDAGAD--FFCVDVAH  122 (361)
T ss_dssp             CBEEECSSHHHHHHHHHHHHTTCC--EEEEECSC
T ss_pred             EEEEcCCCHHHHHHHHHHHHcCCC--EEEEeCCC
Confidence            999999999999999999999999  67888763

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=99.42  E-value=7.2e-13  Score=116.78  Aligned_cols=102  Identities=11%  Similarity=0.040  Sum_probs=73.9

Q ss_pred             CCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccc--------cHHHHHhhCCCCce
Q psy13219          4 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT--------SLEEVRAQNPSTTL   75 (193)
Q Consensus         4 dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~--------s~eei~~~~~~~~~   75 (193)
                      |++++||+|+|||++++.||++|||++......+.+..+|++|+++|++|++|+++..        |.+-+.+..|+.+.
T Consensus        43 ~~~~vd~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~~~s~~~vr~~ap~~~~  122 (368)
T 3vkj_A           43 SFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFAIVRKVAPTIPI  122 (368)
T ss_dssp             BGGGCBCCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGGSHHHHHHHHHCSSSCE
T ss_pred             CcccccceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHHHhhHHHHHHhCcCcce
Confidence            7789999999999999999999998654332335668999999999999999999421        23224545677777


Q ss_pred             EEEEEee-----cCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219         76 WLQMYIF-----KDRALSLQMVQRAERSGYSAIVITMD  108 (193)
Q Consensus        76 wfQlY~~-----~dr~~~~~ll~RAe~AG~~AlvvTVD  108 (193)
                      +-.+...     .+.+..++   .++.+++.|+.|.+.
T Consensus       123 ~anlg~~ql~~~~~~~~~~~---av~~~~a~al~Ihln  157 (368)
T 3vkj_A          123 IANLGMPQLVKGYGLKEFQD---AIQMIEADAIAVHLN  157 (368)
T ss_dssp             EEEEEGGGGGTTCCHHHHHH---HHHHTTCSEEEEECC
T ss_pred             ecCcCeeecCCCCCHHHHHH---HHHHhcCCCeEEEec
Confidence            7666662     23333333   345568889988865

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=99.19  E-value=2.7e-12  Score=111.44  Aligned_cols=129  Identities=9%  Similarity=0.125  Sum_probs=86.2

Q ss_pred             CcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEe
Q psy13219          2 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI   81 (193)
Q Consensus         2 L~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~   81 (193)
                      ++|++++|++|+|+|.+++.||++||++...                              .++++++.. ...|||+|.
T Consensus        28 ~~~~~~vdl~t~i~g~~l~~Pi~~a~mag~s------------------------------~~~la~a~~-~~gg~g~~~   76 (336)
T 1ypf_A           28 VNSRSECDTTVTLGKHKFKLPVVPANMQTII------------------------------DERIATYLA-ENNYFYIMH   76 (336)
T ss_dssp             CSSGGGCBCCEEETTEEESSSEEECSSTTTC------------------------------CHHHHHHHH-HTTCCCCCC
T ss_pred             CCCcccCcceEEECCEEecCcEEECCCCCCC------------------------------hHHHHHHHH-hCCCEEEec
Confidence            5789999999999999999999998866321                              133322211 124788888


Q ss_pred             ecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchhh
Q psy13219         82 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTD  161 (193)
Q Consensus        82 ~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      .++++.++++++++++.|+   .+++|   .|.++++.+.-         +.+.+.....    .+-.+.  . .     
T Consensus        77 ~~~~~~~~~~i~~~~~~g~---~v~v~---~g~~~~~~~~a---------~~~~~~g~~~----~~i~i~--~-~-----  129 (336)
T 1ypf_A           77 RFQPEKRISFIRDMQSRGL---IASIS---VGVKEDEYEFV---------QQLAAEHLTP----EYITID--I-A-----  129 (336)
T ss_dssp             CSSGGGHHHHHHHHHHTTC---CCEEE---ECCSHHHHHHH---------HHHHHTTCCC----SEEEEE--C-S-----
T ss_pred             CCCCHHHHHHHHHHHhcCC---eEEEe---CCCCHHHHHHH---------HHHHhcCCCC----CEEEEE--C-C-----
Confidence            8888888999999999886   66888   47777766431         1111110000    000000  0 0     


Q ss_pred             HhhhhCCCCCCHHHHHHHHhcCCCCEEEec-C
Q psy13219        162 YVANQFDDSVDWDDVRSLVQATKLPIVCKG-I  192 (193)
Q Consensus       162 ~~~~~~~~~~tW~di~wlr~~~~lPivlKG-I  192 (193)
                          .-++...|+.|+|+|+.|++|+++|| |
T Consensus       130 ----~G~~~~~~~~i~~lr~~~~~~~vi~G~v  157 (336)
T 1ypf_A          130 ----HGHSNAVINMIQHIKKHLPESFVIAGNV  157 (336)
T ss_dssp             ----SCCSHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             ----CCCcHHHHHHHHHHHHhCCCCEEEECCc
Confidence                01456789999999999999999998 5

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=98.94  E-value=9.4e-11  Score=103.89  Aligned_cols=167  Identities=10%  Similarity=0.043  Sum_probs=79.5

Q ss_pred             CCCCCCCcceEC-CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEE----
Q psy13219          4 NVCDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQ----   78 (193)
Q Consensus         4 dv~~~d~~t~~l-G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQ----   78 (193)
                      +++++|++|+|+ |.+++.||++|||++    ++++|++.|  ++++|...+++  ++.++|++.+..+ ..+|+|    
T Consensus        25 ~~~~vdlst~l~~g~~l~~Pii~Apm~~----~~~~ela~a--~a~aGglg~i~--~~~s~e~~~~~~~-~~~~~~~~~g   95 (404)
T 1eep_A           25 LPSEVSLKTQLTKNISLNIPFLSSAMDT----VTESQMAIA--IAKEGGIGIIH--KNMSIEAQRKEIE-KVKTYKFQKT   95 (404)
T ss_dssp             CGGGCCCCEESSSSCEESSSEEECCCTT----TCSHHHHHH--HHHHTSEEEEC--SSSCHHHHHHHHH-HHHTCC----
T ss_pred             CccccccceeccCCcccCCCEEeCCCCC----CCCHHHHHH--HHHCCCEEEEC--CCCCHHHHHHHHH-HHHhhccCCC
Confidence            678999999999 999999999999985    667887766  55566555565  5678998876643 234554    


Q ss_pred             EEeecCHHHHH-HHHHHHHHc----CCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccc
Q psy13219         79 MYIFKDRALSL-QMVQRAERS----GYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAE  153 (193)
Q Consensus        79 lY~~~dr~~~~-~ll~RAe~A----G~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (193)
                      +|..+|....+ .++-.....    +++.+..+.|.|.. .|+.+.+..+.    .   |+..   .+........... 
T Consensus        96 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~----~---~i~~---~~~~~~~a~~~~~-  163 (404)
T 1eep_A           96 INTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNA-CKDLNNKLRVG----A---AVSI---DIDTIERVEELVK-  163 (404)
T ss_dssp             ----------------------------------CCTTC-CBCTTSCBCCE----E---EECS---CTTHHHHHHHHHH-
T ss_pred             ceeccccccccccccccCCCCCHHHHHHHHHHhhhcchh-hhhcccCceEE----E---EeCC---ChhHHHHHHHHHH-
Confidence            66666644321 222211111    34555666666653 34333232221    0   0000   0000000000000 


Q ss_pred             cCCcchhhHhhhhCCCCCCHHHHHHHHhcC-CCCEEEecC
Q psy13219        154 ECSSGLTDYVANQFDDSVDWDDVRSLVQAT-KLPIVCKGI  192 (193)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~tW~di~wlr~~~-~lPivlKGI  192 (193)
                      .+...+. .-...-++...|+.|+|+|+.+ +.||+++++
T Consensus       164 ~G~d~i~-i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v  202 (404)
T 1eep_A          164 AHVDILV-IDSAHGHSTRIIELIKKIKTKYPNLDLIAGNI  202 (404)
T ss_dssp             TTCSEEE-ECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             CCCCEEE-EeCCCCChHHHHHHHHHHHHHCCCCeEEEcCC
Confidence            0000000 0001124556799999999999 789999775

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.93  E-value=3.3e-09  Score=103.73  Aligned_cols=139  Identities=19%  Similarity=0.185  Sum_probs=99.7

Q ss_pred             CCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeee-ccCc------------------------
Q psy13219          5 VCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL-SLMS------------------------   59 (193)
Q Consensus         5 v~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~l-st~s------------------------   59 (193)
                      +..+|++++++|.+++.||++||+++.      .+...++++...|..+++ .|.+                        
T Consensus       528 v~~v~ls~~~~G~~~~nPv~lAa~~~~------~~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~~~  601 (1025)
T 1gte_A          528 VDLVDISVEMAGLKFINPFGLASAAPT------TSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYG  601 (1025)
T ss_dssp             GGGCCCCEEETTEEESSSEEECSSGGG------SSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCS
T ss_pred             cccccceeeeccccccCcccccCCCCC------CCHHHHHHHHHCCcCeEEeceecccccccCCCCccEEeccccccccC
Confidence            457899999999999999999998653      334445666666777665 1111                        


Q ss_pred             -------------ccc-------HHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhh
Q psy13219         60 -------------TTS-------LEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDL  119 (193)
Q Consensus        60 -------------s~s-------~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~  119 (193)
                                   +.+       ++++.+..++.+.|+|++...|.+...+++++++++||.+|.|++.+|.. .++++.
T Consensus       602 ~~~~~~~n~e~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~~~  680 (1025)
T 1gte_A          602 PGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGERGM  680 (1025)
T ss_dssp             SCCSCEEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC----
T ss_pred             CchhheeeeccccchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCc
Confidence                         011       34555556678899999998999999999999999999999999998853 211110


Q ss_pred             hcCCCCCCccchhhhhccccCcccchhhcccccccCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecC
Q psy13219        120 KNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGI  192 (193)
Q Consensus       120 r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI  192 (193)
                        |                                  ..+      ..++.+.|+.++|+|+.++.||++|..
T Consensus       681 --G----------------------------------~~~------~~~~~~~~~iv~~v~~~~~~Pv~vK~~  711 (1025)
T 1gte_A          681 --G----------------------------------LAC------GQDPELVRNICRWVRQAVQIPFFAKLT  711 (1025)
T ss_dssp             -------------------------------------SBG------GGCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             --c----------------------------------ccc------ccCHHHHHHHHHHHHHhhCCceEEEeC
Confidence              0                                  000      013456788999999999999999963

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=98.91  E-value=1.7e-09  Score=94.58  Aligned_cols=58  Identities=14%  Similarity=0.029  Sum_probs=49.9

Q ss_pred             CC-CCCCCcceEC-----CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhh
Q psy13219          4 NV-CDRDSGLTVL-----GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ   69 (193)
Q Consensus         4 dv-~~~d~~t~~l-----G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~   69 (193)
                      ++ +++|++|+|+     |.+++.||++|||+.      .+|.++|+|++++|...+++.  +.++|++.+.
T Consensus        35 ~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~------~~~~~lA~Ava~~Gglg~i~~--~~s~e~~~~~   98 (351)
T 2c6q_A           35 KSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDT------VGTFEMAKVLCKFSLFTAVHK--HYSLVQWQEF   98 (351)
T ss_dssp             CCGGGCBCCEEEECTTTCCEEEECCEEECSSTT------TSCHHHHHHHHHTTCEEECCT--TCCHHHHHHH
T ss_pred             CccccceeEEEeccccCcCccccCCEEECCCCC------CCcHHHHHHHHHCCCEEEEcC--CCCHHHHHHH
Confidence            56 7899999999     999999999999873      567899999999998888875  6788887664

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=98.33  E-value=9.1e-07  Score=75.82  Aligned_cols=124  Identities=19%  Similarity=0.065  Sum_probs=85.4

Q ss_pred             eeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccc---------cHHHHHhhCCCCceEEEEEeecCHHHH
Q psy13219         18 RYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT---------SLEEVRAQNPSTTLWLQMYIFKDRALS   88 (193)
Q Consensus        18 ~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~---------s~eei~~~~~~~~~wfQlY~~~dr~~~   88 (193)
                      ++..||++|||+.  +.    +....+.+++.|.-++++-+.+.         .++.+ ....+.+.++||+ -+|.+..
T Consensus         2 ~l~nri~~APM~~--~t----~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l-~~~~~~~~~~QL~-g~~~~~~   73 (318)
T 1vhn_A            2 SLEVKVGLAPMAG--YT----DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIF-GSEPNEL   73 (318)
T ss_dssp             ---CEEEECCCTT--TC----SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEE-CSCHHHH
T ss_pred             ccCCCEEECCCCC--CC----cHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhh-hCcCCCeEEEEeC-CCCHHHH
Confidence            4678999999873  32    35677777777777766654321         13333 2234578999999 7788999


Q ss_pred             HHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchhhHhhhhCC
Q psy13219         89 LQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFD  168 (193)
Q Consensus        89 ~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      .+..++|+++ |.+|-|++.+|....|.    +++                               + +++      .-+
T Consensus        74 ~~aa~~a~~~-~d~Iein~gcP~~~~r~----~~~-------------------------------G-~~l------~~~  110 (318)
T 1vhn_A           74 SEAARILSEK-YKWIDLNAGCPVRKVVK----EGA-------------------------------G-GAL------LKD  110 (318)
T ss_dssp             HHHHHHHTTT-CSEEEEEECCCCHHHHH----TTC-------------------------------G-GGG------GSC
T ss_pred             HHHHHHHHHh-CCEEEEECCCCcHhcCC----CCc-------------------------------c-cch------hhC
Confidence            9999999999 99999999987643322    111                               0 000      114


Q ss_pred             CCCCHHHHHHHHhcCCCCEEEe---cC
Q psy13219        169 DSVDWDDVRSLVQATKLPIVCK---GI  192 (193)
Q Consensus       169 ~~~tW~di~wlr~~~~lPivlK---GI  192 (193)
                      +.+.|+.++++|+.++.||.+|   |+
T Consensus       111 ~~~~~eiv~~v~~~~~~pv~vKir~G~  137 (318)
T 1vhn_A          111 LRHFRYIVRELRKSVSGKFSVKTRLGW  137 (318)
T ss_dssp             HHHHHHHHHHHHHHCSSEEEEEEESCS
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEecCCC
Confidence            5678999999999999999999   76

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=98.30  E-value=3.5e-06  Score=71.62  Aligned_cols=98  Identities=12%  Similarity=0.095  Sum_probs=60.7

Q ss_pred             CCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeec-cCc--------------------------c
Q psy13219          8 RDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILS-LMS--------------------------T   60 (193)
Q Consensus         8 ~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~ls-t~s--------------------------s   60 (193)
                      +|++++++|.+++.||++|+..    .+.++|.  .+.+.+.|+.+++. +.+                          +
T Consensus         2 ~dl~~~i~g~~l~nPi~~Aag~----~~~~~~~--~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~   75 (314)
T 2e6f_A            2 MCLKLNLLDHVFANPFMNAAGV----LCSTEED--LRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPN   75 (314)
T ss_dssp             CCCCEEETTEEESSSEEECTTS----SCSSHHH--HHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCB
T ss_pred             CCcceEECCEecCCCcEECCCC----CCCCHHH--HHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCC
Confidence            5899999999999999999632    2334554  45678888877543 222                          1


Q ss_pred             ccH----HHHHhh-C-CCCceEEEEEeecCHHHHHHHHHHHHHcCCc---EEEEeeccCCC
Q psy13219         61 TSL----EEVRAQ-N-PSTTLWLQMYIFKDRALSLQMVQRAERSGYS---AIVITMDTAVL  112 (193)
Q Consensus        61 ~s~----eei~~~-~-~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~---AlvvTVD~pv~  112 (193)
                      ..+    +++... . ++.+...|+. -.+.+...+.+++++++||.   +|-|++-+|..
T Consensus        76 ~g~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~  135 (314)
T 2e6f_A           76 LGFDFYLKYASDLHDYSKKPLFLSIS-GLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV  135 (314)
T ss_dssp             SCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS
T ss_pred             cCHHHHHHHHHHHhhcCCCcEEEEeC-CCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC
Confidence            122    223322 1 2445566664 34556666777777777777   67777665543

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=98.26  E-value=2.7e-06  Score=73.10  Aligned_cols=89  Identities=17%  Similarity=0.290  Sum_probs=61.4

Q ss_pred             CCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE----ee
Q psy13219          7 DRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY----IF   82 (193)
Q Consensus         7 ~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY----~~   82 (193)
                      .+|++++++|.+++.||++|+ |    ++.++|  .++++++.|+.++++  .+.++|+..  ....++|||+|    +.
T Consensus        42 ~~~l~~~i~g~~l~npi~~aa-g----~~~~~~--~~~~~a~~G~g~i~~--~~~~~~~~~--g~~~pr~~~~~~d~~~i  110 (336)
T 1f76_A           42 VPAKPVNCMGLTFKNPLGLAA-G----LDKDGE--CIDALGAMGFGSIEI--GTVTPRPQP--GNDKPRLFRLVDAEGLI  110 (336)
T ss_dssp             CCCCCEEETTEEESSSEEECT-T----SSTTCC--CHHHHHHTTCSEEEE--EEECSSCBC--CSCSCCEEEETTTTEEE
T ss_pred             CCCCCeEECCEEcCCCcEeCc-c----cCCcHH--HHHHHHHcCccEEEe--CCCCCCCCC--CCCCcceeeccccceee
Confidence            489999999999999999994 3    255666  677788889887654  334444321  22357899998    21


Q ss_pred             -----cCHHHHHHHHHHHHHcCCc-EEEEee
Q psy13219         83 -----KDRALSLQMVQRAERSGYS-AIVITM  107 (193)
Q Consensus        83 -----~dr~~~~~ll~RAe~AG~~-AlvvTV  107 (193)
                           .+.+ .+++++++++++++ .+++++
T Consensus       111 n~~g~~~~g-~~~~~~~~~~~~~~~~~~v~i  140 (336)
T 1f76_A          111 NRMGFNNLG-VDNLVENVKKAHYDGVLGINI  140 (336)
T ss_dssp             ECCCCCBCC-HHHHHHHHHHCCCCSEEEEEE
T ss_pred             ecCCCCCcC-HHHHHHHHHhcccCCcEEEEe
Confidence                 1122 35677788887766 688887

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=98.01  E-value=4.5e-05  Score=64.62  Aligned_cols=96  Identities=11%  Similarity=0.118  Sum_probs=57.0

Q ss_pred             CcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeec-cCcccc--------------------------
Q psy13219         10 SGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILS-LMSTTS--------------------------   62 (193)
Q Consensus        10 ~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~ls-t~ss~s--------------------------   62 (193)
                      ++++++|.+++.||++|| |   ..+.++|..  +.+.+.|..+++. +.+..+                          
T Consensus         2 l~~~i~g~~l~npv~~Aa-g---~~~~~~~~~--~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g   75 (311)
T 1jub_A            2 LNTTFANAKFANPFMNAS-G---VHCMTIEDL--EELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG   75 (311)
T ss_dssp             CCEEETTEEESSSEEECT-T---SSCSSHHHH--HHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred             CceEECCEEcCCCcEECC-C---CCCCCHHHH--HHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcc
Confidence            689999999999999996 2   223345543  6677777766653 222111                          


Q ss_pred             H----HHHHhh---C-CCCceEEEEEeecCHHHHHHHHHHHHHcCCc-EEEEeeccCCC
Q psy13219         63 L----EEVRAQ---N-PSTTLWLQMYIFKDRALSLQMVQRAERSGYS-AIVITMDTAVL  112 (193)
Q Consensus        63 ~----eei~~~---~-~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~-AlvvTVD~pv~  112 (193)
                      +    +++...   . ++.+...|+. -.+.+...+.+++++++|+. +|.+.+-+|..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~  133 (311)
T 1jub_A           76 FDYYLDYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNV  133 (311)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC
Confidence            2    222211   1 1344555654 34556666677777777777 77777655543

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=97.99  E-value=1.3e-05  Score=67.50  Aligned_cols=100  Identities=14%  Similarity=0.179  Sum_probs=64.3

Q ss_pred             CCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHH--hccCceee-----------------------eccC-
Q psy13219          5 VCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAA--GMMDAIMI-----------------------LSLM-   58 (193)
Q Consensus         5 v~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA--~~~g~~~~-----------------------lst~-   58 (193)
                      ++++|++++|+|.+++.||++|| |+.+...   |.  .+.+  ...|...+                       +++. 
T Consensus         2 ~~~~~l~~~~~g~~l~npi~~aa-g~~~~~~---~~--~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g   75 (311)
T 1ep3_A            2 TENNRLSVKLPGLDLKNPIIPAS-GCFGFGE---EY--AKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIG   75 (311)
T ss_dssp             CCCTTTCEEETTEEESSSEEECT-TSSTTST---TG--GGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCC
T ss_pred             CCCCccceEECCEECCCCcEECC-CCCCCCH---HH--HHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCcccccccC
Confidence            36899999999999999999999 3333211   11  2333  34453321                       1222 


Q ss_pred             -ccccHHHH--------HhhCCCCceEEEEEeecCHHHHHHHHHHHHH-cCCcEEEEeeccCC
Q psy13219         59 -STTSLEEV--------RAQNPSTTLWLQMYIFKDRALSLQMVQRAER-SGYSAIVITMDTAV  111 (193)
Q Consensus        59 -ss~s~eei--------~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~-AG~~AlvvTVD~pv  111 (193)
                       .+.+.+++        .+..++.+...||.-. +.+...+..+++++ +|+.+|-|++.+|.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~-~~~~~~~~a~~~~~~~g~d~iei~~~~p~  137 (311)
T 1ep3_A           76 LQNPGLEVIMTEKLPWLNENFPELPIIANVAGS-EEADYVAVCAKIGDAANVKAIELNISCPN  137 (311)
T ss_dssp             CCBCCHHHHHHTHHHHHHHHCTTSCEEEEECCS-SHHHHHHHHHHHTTSTTEEEEEEECCSEE
T ss_pred             CCCcCHHHHHHHHHHHHHhcCCCCcEEEEEcCC-CHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence             23333332        2213456788898743 56777788899988 99999999987664

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=97.45  E-value=0.00019  Score=60.18  Aligned_cols=86  Identities=14%  Similarity=0.259  Sum_probs=63.9

Q ss_pred             CceEEEEEee-------cCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccch
Q psy13219         73 TTLWLQMYIF-------KDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDIS  145 (193)
Q Consensus        73 ~~~wfQlY~~-------~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~  145 (193)
                      +..|++|++.       .|...+.+..++.++.||+.+.+++|.|+.++|..|....+-+|...           +    
T Consensus       102 ~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~-----------p----  166 (265)
T 1wv2_A          102 GHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAG-----------L----  166 (265)
T ss_dssp             SCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSS-----------S----
T ss_pred             CCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEEEeCCc-----------c----
Confidence            5679999998       67777777777777779999999999999999999987654333110           0    


Q ss_pred             hhcccccccCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEec
Q psy13219        146 KFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKG  191 (193)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKG  191 (193)
                              . +++         ..-.+|+-|+.+++..+.|||+.|
T Consensus       167 --------I-GsG---------~Gi~~~~lI~~I~e~~~vPVI~eG  194 (265)
T 1wv2_A          167 --------I-GSG---------LGICNPYNLRIILEEAKVPVLVDA  194 (265)
T ss_dssp             --------T-TCC---------CCCSCHHHHHHHHHHCSSCBEEES
T ss_pred             --------C-CCC---------CCcCCHHHHHHHHhcCCCCEEEeC
Confidence                    0 000         112479999999999999999984

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=96.79  E-value=0.0038  Score=54.06  Aligned_cols=88  Identities=15%  Similarity=0.117  Sum_probs=55.2

Q ss_pred             eCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCc-cccH-----HHHHhhC-CCCceEEEEEeecCHHHHHHH
Q psy13219         19 YRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMS-TTSL-----EEVRAQN-PSTTLWLQMYIFKDRALSLQM   91 (193)
Q Consensus        19 ~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~s-s~s~-----eei~~~~-~~~~~wfQlY~~~dr~~~~~l   91 (193)
                      +.-||++|||+.  .....-. .++++++..|+.+  +-+. ...+     +++.+.. .+.+...||+ -.|.+...+.
T Consensus         2 l~nriv~APM~g--~td~~~r-~~~r~~Gg~gli~--te~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g~~p~~~~~a   75 (350)
T 3b0p_A            2 LDPRLSVAPMVD--RTDRHFR-FLVRQVSLGVRLY--TEMTVDQAVLRGNRERLLAFRPEEHPIALQLA-GSDPKSLAEA   75 (350)
T ss_dssp             CCCSEEECCCTT--TSSHHHH-HHHHHHCSSSBEE--CCCEEHHHHHHSCHHHHHCCCGGGCSEEEEEE-CSCHHHHHHH
T ss_pred             CCCCEEECCCCC--CCHHHHH-HHHHHcCCCCEEE--eCCEEechhhcCCHHHHhccCCCCCeEEEEeC-CCCHHHHHHH
Confidence            567999999874  2221121 2444444444433  2221 1111     2343322 2467899998 5678888899


Q ss_pred             HHHHHHcCCcEEEEeeccCCC
Q psy13219         92 VQRAERSGYSAIVITMDTAVL  112 (193)
Q Consensus        92 l~RAe~AG~~AlvvTVD~pv~  112 (193)
                      .++++++||..|-|++.+|..
T Consensus        76 A~~a~~~G~D~IeIn~gcP~~   96 (350)
T 3b0p_A           76 ARIGEAFGYDEINLNLGCPSE   96 (350)
T ss_dssp             HHHHHHTTCSEEEEEECCCSH
T ss_pred             HHHHHHcCCCEEEECCcCCCC
Confidence            999999999999999987753

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=96.69  E-value=0.026  Score=49.12  Aligned_cols=102  Identities=11%  Similarity=0.057  Sum_probs=62.6

Q ss_pred             CCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeee-ccC------------------------
Q psy13219          4 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL-SLM------------------------   58 (193)
Q Consensus         4 dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~l-st~------------------------   58 (193)
                      .+.+.|++|+++|.++.-||++|.    +..-.++|.  .++....|.-+++ .|.                        
T Consensus        31 ~~~~~~L~~~~~Gl~~~NPv~lAA----G~~~~~~e~--~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~  104 (354)
T 4ef8_A           31 GRGSMSLQVNLLNNTFANPFMNAA----GVMCTTTEE--LVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSM  104 (354)
T ss_dssp             ---CCCCCEEETTEEESSSEEECT----TSSCSSHHH--HHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECC
T ss_pred             CCCCCCcceEECCEECCCCCEecc----CCCCCCHHH--HHHHHHcCCCeEEeCcccCcccCCCCCCcEEecchhhhccC
Confidence            356789999999999999999976    222123443  3444444443322 211                        


Q ss_pred             --ccccHHH----HHhh--CCCCceEEEEEeecCHHHHHHHHHHHH---HcCCcEEEEeeccCCC
Q psy13219         59 --STTSLEE----VRAQ--NPSTTLWLQMYIFKDRALSLQMVQRAE---RSGYSAIVITMDTAVL  112 (193)
Q Consensus        59 --ss~s~ee----i~~~--~~~~~~wfQlY~~~dr~~~~~ll~RAe---~AG~~AlvvTVD~pv~  112 (193)
                        .+..+|.    +.+.  .++.+...||. -.+.+...+.+++++   ++|+.+|.|.+=+|..
T Consensus       105 G~~n~G~~~~~~~l~~~~~~~~~pvivsI~-G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~  168 (354)
T 4ef8_A          105 GLPNNGFDFYLAYAAEQHDYGKKPLFLSMS-GLSMRENVEMCKRLAAVATEKGVILELNLSCPNV  168 (354)
T ss_dssp             CCCBCCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCS
T ss_pred             CCCCcCHHHHHHHHHHHhhcCCCcEEEEec-cCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCC
Confidence              1334443    4332  23457788874 456777777888887   6789999999888754

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=96.38  E-value=0.0091  Score=52.02  Aligned_cols=88  Identities=9%  Similarity=0.029  Sum_probs=55.0

Q ss_pred             CCCCCCcceEC-CceeCCceeecchhccccCCchHHHHHHHHHh-ccCceeeeccCccccHHHHH----hh--CCCCceE
Q psy13219          5 VCDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAG-MMDAIMILSLMSTTSLEEVR----AQ--NPSTTLW   76 (193)
Q Consensus         5 v~~~d~~t~~l-G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~-~~g~~~~lst~ss~s~eei~----~~--~~~~~~w   76 (193)
                      .+++|++|+|. +..+..||+.|||...      .|..+|.+.+ +-|+.++-.   +.+.|++.    +.  .+..+.-
T Consensus        29 ~~~vdl~t~l~~~~~l~~Pii~apM~~v------t~~~lA~avA~~GGlgii~~---~~s~e~~~~~I~~vk~~~~~pvg   99 (361)
T 3khj_A           29 PREVSLETKLTKNVSLKIPLISSAMDTV------TEHLMAVGMARLGGIGIIHK---NMDMESQVNEVLKVKNSGGLRVG   99 (361)
T ss_dssp             GGGCCCCEESSSSCEESSSEEECSSTTT------CSHHHHHHHHHTTCEEEECS---SSCHHHHHHHHHHHHHTTCCCCE
T ss_pred             HHHccCceecccccccCCCEEeecCCCC------CcHHHHHHHHHcCCCeEEec---CCCHHHHHHHHHHHHhccCceEE
Confidence            46789999998 7999999999998743      2335666544 455555544   34444332    21  1233444


Q ss_pred             EEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219         77 LQMYIFKDRALSLQMVQRAERSGYSAIVIT  106 (193)
Q Consensus        77 fQlY~~~dr~~~~~ll~RAe~AG~~AlvvT  106 (193)
                      ..+....     .+.++.+.++|+..|+|+
T Consensus       100 a~ig~~~-----~e~a~~l~eaGad~I~ld  124 (361)
T 3khj_A          100 AAIGVNE-----IERAKLLVEAGVDVIVLD  124 (361)
T ss_dssp             EEECTTC-----HHHHHHHHHTTCSEEEEC
T ss_pred             EEeCCCH-----HHHHHHHHHcCcCeEEEe
Confidence            5554432     567788889999966543

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=95.64  E-value=0.023  Score=48.92  Aligned_cols=41  Identities=12%  Similarity=0.069  Sum_probs=29.7

Q ss_pred             CCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccC
Q psy13219          6 CDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMD   50 (193)
Q Consensus         6 ~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g   50 (193)
                      .+.|++|++||.+|+-||++|.    +.+..++|..-+-....+|
T Consensus        33 ~~~~L~v~~~Gl~f~NPvglAa----G~~~~~~e~~~~l~~~G~G   73 (354)
T 3tjx_A           33 GSMSLQVNLLNNTFANPFMNAA----GVMCTTTEELVAMTESASG   73 (354)
T ss_dssp             CCCCCCEEETTEEESSSEEECT----TSSCSSHHHHHHHHHSSCS
T ss_pred             CCCceeEEECCEEcCCCcEEcc----CCCCCCHHHHHHHHHcCCC
Confidence            4788999999999999999984    3345567755444444444

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=95.49  E-value=0.16  Score=43.95  Aligned_cols=98  Identities=12%  Similarity=0.066  Sum_probs=64.0

Q ss_pred             CCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeec-cCc--------------------------c
Q psy13219          8 RDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILS-LMS--------------------------T   60 (193)
Q Consensus         8 ~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~ls-t~s--------------------------s   60 (193)
                      .|++++++|.++.-||++|.    +..-.+.|  ..+++...|.-+++. |.+                          +
T Consensus        36 ~~L~~~~~Gl~~~NPv~lAa----G~~~~~~e--~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~n  109 (345)
T 3oix_A           36 VSTHTTIGSFDFDNCLMNAA----GVYCMTRE--ELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPN  109 (345)
T ss_dssp             CCCCEEETTEEESCSEEECT----TSSCSSHH--HHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCB
T ss_pred             CCcCeEECCEECCCCCEEcC----CCCCCCHH--HHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCCC
Confidence            68999999999999999983    22111223  344455555544432 221                          2


Q ss_pred             ccH----HHHHh---hCCCCceEEEEEeecCHHHHHHHHHHHHHcCCc-EEEEeeccCCC
Q psy13219         61 TSL----EEVRA---QNPSTTLWLQMYIFKDRALSLQMVQRAERSGYS-AIVITMDTAVL  112 (193)
Q Consensus        61 ~s~----eei~~---~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~-AlvvTVD~pv~  112 (193)
                      ..+    +++..   ...+.+...||. -.+.+...+..++++++||. +|.|.+=+|..
T Consensus       110 ~G~~~~~~~l~~~~~~~~~~pvivsI~-g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~  168 (345)
T 3oix_A          110 LGINYYLDYVTELQKQPDSKNHFLSLV-GMSPEETHTILXMVEASKYQGLVELNLSCPNV  168 (345)
T ss_dssp             SCHHHHHHHHHHHHHSTTCCCCEEEEC-CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCS
T ss_pred             hhHHHHHHHHHHHhhccCCCCEEEEec-CCCHHHHHHHHHHHhccCCCcEEEEecCCCCc
Confidence            233    33433   224567888986 45677788888999989988 99999888753

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=95.43  E-value=0.03  Score=46.44  Aligned_cols=21  Identities=19%  Similarity=0.510  Sum_probs=18.8

Q ss_pred             CHHHHHHHHhcCCCCEEEe-cC
Q psy13219        172 DWDDVRSLVQATKLPIVCK-GI  192 (193)
Q Consensus       172 tW~di~wlr~~~~lPivlK-GI  192 (193)
                      +|+.++++++.++.|+++. ||
T Consensus       166 ~~~~l~~i~~~~~iPviv~gGI  187 (264)
T 1xm3_A          166 NPLNLSFIIEQAKVPVIVDAGI  187 (264)
T ss_dssp             CHHHHHHHHHHCSSCBEEESCC
T ss_pred             CHHHHHHHHhcCCCCEEEEeCC
Confidence            5899999999999999997 56

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=94.45  E-value=0.083  Score=46.08  Aligned_cols=93  Identities=17%  Similarity=0.064  Sum_probs=53.6

Q ss_pred             CCCCCCcceEC-CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhC----CCCceEEEE
Q psy13219          5 VCDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQN----PSTTLWLQM   79 (193)
Q Consensus         5 v~~~d~~t~~l-G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~----~~~~~wfQl   79 (193)
                      .+++|++|+|. +..+..||+.|||...      .|..+|.+.+++|-.-++..  +.+.|+..+..    ..++.-..+
T Consensus        30 ~~~vdl~t~lt~~~~l~~Pii~apM~~v------s~~~lA~avA~aGGlg~i~~--~~s~e~~~~~i~~vk~~~~l~vga  101 (366)
T 4fo4_A           30 PNTADLRTRLTKNIALNIPMVSASMDTV------TEARLAIALAQEGGIGFIHK--NMSIEQQAAQVHQVKISGGLRVGA  101 (366)
T ss_dssp             GGGCBCCEEEETTEEESSSEEECCCTTT------CSHHHHHHHHHTTCEEEECS--SSCHHHHHHHHHHHHTTTSCCCEE
T ss_pred             hhhcccceecccccccCCCEEeCCCCCC------ChHHHHHHHHHcCCceEeec--CCCHHHHHHHHHHHHhcCceeEEE
Confidence            34789999998 6889999999998732      23466666555544434432  34555442221    111111222


Q ss_pred             EeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219         80 YIFKDRALSLQMVQRAERSGYSAIVIT  106 (193)
Q Consensus        80 Y~~~dr~~~~~ll~RAe~AG~~AlvvT  106 (193)
                      -+..+ ....+.++.+.++|+..|+|+
T Consensus       102 ~vg~~-~~~~~~~~~lieaGvd~I~id  127 (366)
T 4fo4_A          102 AVGAA-PGNEERVKALVEAGVDVLLID  127 (366)
T ss_dssp             ECCSC-TTCHHHHHHHHHTTCSEEEEE
T ss_pred             EeccC-hhHHHHHHHHHhCCCCEEEEe
Confidence            22111 124466777889999987764

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=94.34  E-value=0.069  Score=45.47  Aligned_cols=87  Identities=11%  Similarity=0.087  Sum_probs=54.9

Q ss_pred             ceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHH-------HHhhCCCCceEEEEEeecC
Q psy13219         12 LTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEE-------VRAQNPSTTLWLQMYIFKD   84 (193)
Q Consensus        12 t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~ee-------i~~~~~~~~~wfQlY~~~d   84 (193)
                      +++||  +..||+.+||+  ++..    ..++.++.++|..-++.+. ..+.++       +.+.. +.+...|++....
T Consensus         6 ~~~l~--~~~Pii~apM~--g~s~----~~la~av~~aG~lG~i~~~-~~~~~~~~~~i~~i~~~~-~~p~gvnl~~~~~   75 (332)
T 2z6i_A            6 TELLK--IDYPIFQGGMA--WVAD----GDLAGAVSKAGGLGIIGGG-NAPKEVVKANIDKIKSLT-DKPFGVNIMLLSP   75 (332)
T ss_dssp             HHHHT--CSSSEEECCCT--TTCC----HHHHHHHHHHTSBEEEECT-TCCHHHHHHHHHHHHHHC-CSCEEEEECTTST
T ss_pred             hHHhC--CCCCEEeCCCC--CCCc----HHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhc-CCCEEEEecCCCC
Confidence            34666  67899999997  3433    3466677777753333322 123332       22222 3567788876322


Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219         85 RALSLQMVQRAERSGYSAIVITMDTA  110 (193)
Q Consensus        85 r~~~~~ll~RAe~AG~~AlvvTVD~p  110 (193)
                       . ..+.++++.++|+..+.+..+.|
T Consensus        76 -~-~~~~~~~a~~~g~d~V~~~~g~p   99 (332)
T 2z6i_A           76 -F-VEDIVDLVIEEGVKVVTTGAGNP   99 (332)
T ss_dssp             -T-HHHHHHHHHHTTCSEEEECSSCG
T ss_pred             -C-HHHHHHHHHHCCCCEEEECCCCh
Confidence             1 45688899999999999988765

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=94.29  E-value=0.22  Score=42.11  Aligned_cols=89  Identities=11%  Similarity=0.125  Sum_probs=56.5

Q ss_pred             ceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHH-------HHhhCCCCceEEEEEeec-
Q psy13219         12 LTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEE-------VRAQNPSTTLWLQMYIFK-   83 (193)
Q Consensus        12 t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~ee-------i~~~~~~~~~wfQlY~~~-   83 (193)
                      +++||  +..||+.|||++  +.    +..+|.++.++|..-++...+..+.++       +.+.. +.+.-.++++.. 
T Consensus         9 ~~~l~--~~~Pii~apM~g--vs----~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~-~~p~~v~l~v~~~   79 (328)
T 2gjl_A            9 TETFG--VEHPIMQGGMQW--VG----RAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELT-DRPFGVNLTLLPT   79 (328)
T ss_dssp             HHHHT--CSSSEEECCCTT--TC----SHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHC-SSCCEEEEEECCC
T ss_pred             HHHhC--CCCCEEECCCCC--CC----cHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecccc
Confidence            45675  468999999963  43    345777888777544454332222333       33322 345667888861 


Q ss_pred             --CHHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219         84 --DRALSLQMVQRAERSGYSAIVITMDTA  110 (193)
Q Consensus        84 --dr~~~~~ll~RAe~AG~~AlvvTVD~p  110 (193)
                        +++ ..+.++.+.++|+..|.+..+.|
T Consensus        80 ~~~~~-~~~~~~~~~~~g~d~V~~~~g~p  107 (328)
T 2gjl_A           80 QKPVP-YAEYRAAIIEAGIRVVETAGNDP  107 (328)
T ss_dssp             SSCCC-HHHHHHHHHHTTCCEEEEEESCC
T ss_pred             ccCcc-HHHHHHHHHhcCCCEEEEcCCCc
Confidence              122 45678888999999999998765

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=90.18  E-value=0.76  Score=39.46  Aligned_cols=84  Identities=10%  Similarity=0.046  Sum_probs=52.5

Q ss_pred             CCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHH-------HhhCCCCceEEEEEeecCH-------
Q psy13219         20 RCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV-------RAQNPSTTLWLQMYIFKDR-------   85 (193)
Q Consensus        20 ~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei-------~~~~~~~~~wfQlY~~~dr-------   85 (193)
                      ..||+.|||++ ++    .+..+|.|+.++|-.-++++ ...+.|++       .+.. +.+.-.+++...+.       
T Consensus        10 ~~Pii~apMag-gv----s~~~la~av~~aGglG~i~~-~~~s~~~l~~~i~~~~~~~-~~p~gVnl~~~~~~~~~~~~~   82 (369)
T 3bw2_A           10 PLPIVQAPMAG-GV----SVPQLAAAVCEAGGLGFLAA-GYKTADGMYQEIKRLRGLT-GRPFGVNVFMPQPELAESGAV   82 (369)
T ss_dssp             SSSEEECCCTT-TT----SCHHHHHHHHHTTSBEEEEC-TTSCHHHHHHHHHHHHHHC-CSCEEEEEECCCCCC---CHH
T ss_pred             cCCEEeCCCCC-CC----CcHHHHHHHHHCCCEEEcCC-CCCCHHHHHHHHHHHHHhC-CCCeEEEEecCCCCcccHHHH
Confidence            88999999974 22    23567777777876555554 23344433       2322 23555666665431       


Q ss_pred             --------------------------HHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219         86 --------------------------ALSLQMVQRAERSGYSAIVITMDTA  110 (193)
Q Consensus        86 --------------------------~~~~~ll~RAe~AG~~AlvvTVD~p  110 (193)
                                                +...+.++.+.++|+..+.++...|
T Consensus        83 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~  133 (369)
T 3bw2_A           83 EVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVP  133 (369)
T ss_dssp             HHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCC
T ss_pred             HHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCC
Confidence                                      1135667888889999999988765

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=85.48  E-value=2.7  Score=35.46  Aligned_cols=84  Identities=7%  Similarity=0.076  Sum_probs=49.6

Q ss_pred             eeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHH----HhhC--CCCceEEEEEeecCHHHHHHH
Q psy13219         18 RYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV----RAQN--PSTTLWLQMYIFKDRALSLQM   91 (193)
Q Consensus        18 ~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei----~~~~--~~~~~wfQlY~~~dr~~~~~l   91 (193)
                      .+..||+.|||++  +.+    ..+|.++.++|..-+++.. ..+.|++    .+..  .+.+.-.++... +. ...+.
T Consensus        24 ~~~~Pii~apM~g--vs~----~~la~av~~aGglG~i~~~-~~~~~~l~~~i~~i~~~~~~p~gVnl~~~-~~-~~~~~   94 (326)
T 3bo9_A           24 EIEHPILMGGMAW--AGT----PTLAAAVSEAGGLGIIGSG-AMKPDDLRKAISELRQKTDKPFGVNIILV-SP-WADDL   94 (326)
T ss_dssp             TCSSSEEECCCTT--TSC----HHHHHHHHHTTSBEEEECT-TCCHHHHHHHHHHHHTTCSSCEEEEEETT-ST-THHHH
T ss_pred             CCCCCEEECCCCC--CCC----HHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEEecc-CC-CHHHH
Confidence            4578999999973  433    3467777777754444322 2233332    2111  123444555542 22 13567


Q ss_pred             HHHHHHcCCcEEEEeeccC
Q psy13219         92 VQRAERSGYSAIVITMDTA  110 (193)
Q Consensus        92 l~RAe~AG~~AlvvTVD~p  110 (193)
                      ++.+.++|+..+.+..+.|
T Consensus        95 ~~~~~~~g~d~V~l~~g~p  113 (326)
T 3bo9_A           95 VKVCIEEKVPVVTFGAGNP  113 (326)
T ss_dssp             HHHHHHTTCSEEEEESSCC
T ss_pred             HHHHHHCCCCEEEECCCCc
Confidence            8888899999999987765

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=84.43  E-value=0.38  Score=48.81  Aligned_cols=54  Identities=11%  Similarity=-0.101  Sum_probs=41.6

Q ss_pred             CCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHH
Q psy13219          6 CDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV   66 (193)
Q Consensus         6 ~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei   66 (193)
                      +++|+.+     ++..||+++||++..+ .++...++|+||.++|+.+.++..+ .+.|+.
T Consensus       841 ~ev~~~~-----~I~~Pf~isaMS~Gal-S~ea~~aLA~Aa~~aGg~~~tGeGg-~~pe~~  894 (1479)
T 1ea0_A          841 DEVESIT-----AIRKRFITPGMSMGAL-SPEAHGTLNVAMNRIGAKSDSGEGG-EDPARF  894 (1479)
T ss_dssp             GGSCCHH-----HHHTTEEEEECCBTTB-CHHHHHHHHHHHHHTTCEEECCTTC-CCGGGS
T ss_pred             ccccccc-----cccCCeEecCcccccc-CHHHHHHHHHHHHHcCCeeEcCCCc-cCHHHh
Confidence            3455545     6799999999987655 6788999999999999999988654 344444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1goxa_	359	c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia	1e-23
d1kbia1	414	c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal	1e-21
d1tb3a1	349	c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus	1e-20
d1p4ca_	353	c.1.4.1 (A:) Membrane-associated (S)-mandelate deh	3e-17
d1p0ka_	329	c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera	1e-14
d1vcfa1	310	c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i	4e-13

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 93.8 bits (232), Expect = 1e-23
 Identities = 82/190 (43%), Positives = 117/190 (61%), Gaps = 10/190 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
           ++ +V + D   T+LG +   P+ IAP+AMQK+AH +GE ATARAA     IM LS  +T
Sbjct: 51  ILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWAT 110

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
           +S+EEV +  P    + Q+Y++KDR +  Q+V+RAER+G+ AI +T+DT  LG R  D+K
Sbjct: 111 SSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 169

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP+L+L NF  +     D         +   SGL+ YVA Q D S+ W DV  L 
Sbjct: 170 NRFVLPPFLTLKNFEGIDLGKMD---------KANDSGLSSYVAGQIDRSLSWKDVAWLQ 220

Query: 181 QATKLPIVCK 190
             T LPI+ K
Sbjct: 221 TITSLPILVK 230

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.8 bits (219), Expect = 1e-21
 Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 20/195 (10%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAH---ADGEVATARAAGMMDAIMILSL 57
           ++ +V   D    +LG+    P  ++ +A+ KL +    + +VA     G+     ++S 
Sbjct: 73  ILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMIST 132

Query: 58  MSTTSLEEVR--AQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSR 115
           +++ S EE+   A +     W Q+Y+  DR ++  +V+  E+ G  A+ +T+D   LG R
Sbjct: 133 LASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQR 192

Query: 116 YRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDD 175
            +D+K KF+       A  +               +  E S G +  ++   D S+ W D
Sbjct: 193 EKDMKLKFSNTKAGPKAMKK---------------TNVEESQGASRALSKFIDPSLTWKD 237

Query: 176 VRSLVQATKLPIVCK 190
           +  L + TKLPIV K
Sbjct: 238 IEELKKKTKLPIVIK 252

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.7 bits (211), Expect = 1e-20
 Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 16/190 (8%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
            +R++   D+  T+ G     P+ I+P+A   +A  DGE +TARAA   +   ++S  ++
Sbjct: 50  YLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYAS 109

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
            SLE++ A  P    W Q+Y+  D   + QMVQRAE  G+ A+VIT+DT VLG+R RD +
Sbjct: 110 YSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKR 169

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+  +   + L + R LK+                         +    S  W+D+  L 
Sbjct: 170 NQLNLEANILLKDLRALKEEKP----------------TQSVPVSFPKASFCWNDLSLLQ 213

Query: 181 QATKLPIVCK 190
             T+LPI+ K
Sbjct: 214 SITRLPIILK 223

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 76.2 bits (186), Expect = 3e-17
 Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 11/192 (5%)

Query: 1   MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
            + +V  R     VLG R   P+ I P+ +       G++A ARAA       +LS  S 
Sbjct: 50  RLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASN 109

Query: 61  TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
            S+E++  Q               R ++  MV +A  +GY+ +V+T D AV G R RDL 
Sbjct: 110 MSIEDLARQCD--GDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLH 167

Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
           N+F +PP+L+L NF  +     D         +         ++ Q D S +W+ +R L 
Sbjct: 168 NRFKIPPFLTLKNFEGIDLGKMD---------KANLEMQAALMSRQMDASFNWEALRWLR 218

Query: 181 QATKLPIVCKGI 192
                 ++ KG+
Sbjct: 219 DLWPHKLLVKGL 230

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

 Score = 68.3 bits (166), Expect = 1e-14
 Identities = 14/133 (10%), Positives = 34/133 (25%), Gaps = 6/133 (4%)

Query: 3   RNVCDRDSGLTVLGTRYRCPVGIAP-SAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
             +   D    +       P+ I   +        +   + ARAA      + +    + 
Sbjct: 18  LALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA 77

Query: 62  SLEEVRAQNPSTT-----LWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRY 116
             +     +           L        A + Q  +  E  G +A+ I ++        
Sbjct: 78  LKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMP 137

Query: 117 RDLKNKFTMPPYL 129
              ++       +
Sbjct: 138 EGDRSFSGALKRI 150

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

 Score = 64.1 bits (155), Expect = 4e-13
 Identities = 27/187 (14%), Positives = 46/187 (24%), Gaps = 8/187 (4%)

Query: 4   NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSL 63
            + + D     LG   + P  I      +       +A A AA  +   M+L        
Sbjct: 20  ALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLE 79

Query: 64  EE-------VRAQNPSTTLWLQMYIFKDRALSLQMVQRA-ERSGYSAIVITMDTAVLGSR 115
                    VR   P   L   + + + R      + R  E     A+   ++      +
Sbjct: 80  RPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQ 139

Query: 116 YRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDD 175
             D   +  +     L          E        +A          V         W  
Sbjct: 140 RGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWAR 199

Query: 176 VRSLVQA 182
           V   V+ 
Sbjct: 200 VEEWVRF 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	100.0
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	100.0
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	100.0
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	100.0
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	99.85
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	99.74
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	97.46
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	95.67
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	95.09
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	94.95
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	85.46
d1nh8a2	74	ATP phosphoribosyltransferase (ATP-PRTase, HisG),	84.14
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	84.01
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	83.22

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-41  Score=294.74  Aligned_cols=177  Identities=36%  Similarity=0.569  Sum_probs=150.7

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+|++++||+|+|||+++++||+||||+++++.|+++|.++|++|+++|++|++||+++.++|+|.++.+++++|||+|
T Consensus        50 ~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~  129 (349)
T d1tb3a1          50 YLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLY  129 (349)
T ss_dssp             CSSCCSSCBCCEEETTEEESSSEEECCCSCGGGTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECC
T ss_pred             cccCCCCCCCceeECCcCccceEEEcchhcccccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeee
Confidence            58999999999999999999999999999999999999999999999999999999999999999998888899999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +++|++.++++++|++++||+++++|+|.|+.|+|++|+|++|.+|.++...++.......                ...
T Consensus       130 ~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~----------------~~~  193 (349)
T d1tb3a1         130 MKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEK----------------PTQ  193 (349)
T ss_dssp             CCSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC---------------------
T ss_pred             cccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhcc----------------ccc
Confidence            9999999999999999999999999999999999999999999998776554443211110                000


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      .......++.++|+|++|||+.|++|+++|||.
T Consensus       194 ~~~~~~~~~~~~~~~i~~l~~~~~~pii~Kgi~  226 (349)
T d1tb3a1         194 SVPVSFPKASFCWNDLSLLQSITRLPIILKGIL  226 (349)
T ss_dssp             --------CCCCHHHHHHHHTTCCSCEEEEEEC
T ss_pred             cccccccCCCCCHHHHHHHHHhcCCCcccchhh
Confidence            111223468899999999999999999999984

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=1.6e-38  Score=276.24  Aligned_cols=183  Identities=45%  Similarity=0.732  Sum_probs=161.2

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+|++++||+|+|||+++++||+||||+++++.|+++|.++|+||.+.|++|++|++++.++|++++..+ ++.|||+|
T Consensus        51 ~L~d~~~iDlst~~lG~~~~~P~~IspMtgg~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~-~~~~~~~~  129 (359)
T d1goxa_          51 ILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQLY  129 (359)
T ss_dssp             CSCCCSCCBCCEEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCC-CCEEEEEC
T ss_pred             cccCCCCCCCceeECCcccCCceeeccccccccCCCchHHHhhhhHHhhCCcccccccccccchhhHHhcC-CCcccccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999998865 68999999


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      ..+|+..+..+++|++++|++++++|+|.++.+.|++++||++..|++++..++.......         .......+..
T Consensus       130 ~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  200 (359)
T d1goxa_         130 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGK---------MDKANDSGLS  200 (359)
T ss_dssp             CBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC------------------HH
T ss_pred             cchhHHHHHHHHHHHHHhhcccccccccchhhhhhhhhccccccCCcccchhhhhhhcccc---------CcccccccHH
Confidence            9999999999999999999999999999999999999999999999988877665432211         0111123445


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      ..+...++++++|+|++|+++.|++|+++|||+
T Consensus       201 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~  233 (359)
T d1goxa_         201 SYVAGQIDRSLSWKDVAWLQTITSLPILVKGVI  233 (359)
T ss_dssp             HHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCC
T ss_pred             HHHHhhcCCCCCHHHHHHHHhhcccceeeeccc
Confidence            567778899999999999999999999999996

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-36  Score=265.33  Aligned_cols=178  Identities=29%  Similarity=0.464  Sum_probs=146.2

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCch---HHHHHHHHHhccCceeeeccCccccHHHHHhhCC--CCce
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHAD---GEVATARAAGMMDAIMILSLMSTTSLEEVRAQNP--STTL   75 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~---gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~--~~~~   75 (193)
                      +|+|++++||+|+|||+++++||+|||||+++++||.   .+.+.|++++..|++|++|+.++.++|++.+..+  ..+.
T Consensus        73 ~L~dvs~iDlst~~lG~~l~~P~~Isp~g~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~  152 (414)
T d1kbia1          73 ILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQ  152 (414)
T ss_dssp             CSCCCSSCBCCEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCE
T ss_pred             ccCCCcCCCCceeECCccCCCCEEEChhhhhcccCcchhHHHHHhhHHHhhhccccccccccccchHHHHHHhcCCccch
Confidence            6899999999999999999999999999999999983   5566677777799999999999999999998764  3568


Q ss_pred             EEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccC
Q psy13219         76 WLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEEC  155 (193)
Q Consensus        76 wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (193)
                      |||+|.++|++.+..+++|++++||+++++|+|+|+.|+||+|.++.+..+.........     .          ....
T Consensus       153 ~~q~y~~~~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~-----~----------~~~~  217 (414)
T d1kbia1         153 WYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKK-----T----------NVEE  217 (414)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------C-----C----------CCSS
T ss_pred             hhcccccccHHHHHHHHHHHHHcCCcccccccccccccccHHHHHhcccccccchhhhhc-----c----------cccc
Confidence            999999999999999999999999999999999999999999999887544221111000     0          0001


Q ss_pred             CcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        156 SSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      ..+....+....++.++|++|+|+|+.|++|+++|||+
T Consensus       218 ~~~~~~~i~~~~~~~l~~~~i~~i~~~~~~~~i~kgi~  255 (414)
T d1kbia1         218 SQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ  255 (414)
T ss_dssp             CCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEEC
T ss_pred             cccHHHHHHHhcccCCCHHHHHHHhccCCceEEeeccc
Confidence            12233344556788999999999999999999999985

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=5.7e-33  Score=239.58  Aligned_cols=182  Identities=31%  Similarity=0.512  Sum_probs=153.9

Q ss_pred             CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219          1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY   80 (193)
Q Consensus         1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY   80 (193)
                      +|+|++++||+|+|||+++++||+|+||++.+..|+++|.++|++|++.|++|++|++++.++|++++..+ +..|+|.|
T Consensus        50 ~L~d~~~idlst~~lGk~ls~Pi~Iapmtgg~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~~~~e~~~~~~-~~~~~~~~  128 (353)
T d1p4ca_          50 RLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCD-GDLWFQLY  128 (353)
T ss_dssp             CSCCCSSCBCCEEETTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCC-SCEEEEEC
T ss_pred             cccCCCCCCCceEECCcCccCceeeccccccccccchhhHHHHHHHHHhhccccccccccccchhHHHhcC-Cceeeeec
Confidence            47899999999999999999999999999999999999999999999999999999999999999999865 56777755


Q ss_pred             eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219         81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT  160 (193)
Q Consensus        81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                       ..|...+..++++++.+||+++++|+|.|..|.||+|.++++..|...............         ..........
T Consensus       129 -~~~~~~~~~l~~~~~~~g~~~l~~~vd~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  198 (353)
T d1p4ca_         129 -VIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGK---------MDKANLEMQA  198 (353)
T ss_dssp             -CSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSC---------CSSTTTTTHH
T ss_pred             -cccHHHHHHhHHHHHHcCCcceeeeccccccCcchhhhhhhhcccchhhhhhhhhhcccc---------ccccccchhH
Confidence             568999999999999999999999999999999999999999888766554433221110         0001112234


Q ss_pred             hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219        161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP  193 (193)
Q Consensus       161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~  193 (193)
                      ..+....++.++|++++||++.|++|+++|||+
T Consensus       199 ~~~~~~~~~~~~~~~i~~l~~~~~~~i~~kgv~  231 (353)
T d1p4ca_         199 ALMSRQMDASFNWEALRWLRDLWPHKLLVKGLL  231 (353)
T ss_dssp             HHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEEC
T ss_pred             HHHHhccCCCCCHHHHHHHHhccccchhhhcch
Confidence            456667789999999999999999999999985

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=1.7e-22  Score=172.07  Aligned_cols=143  Identities=12%  Similarity=0.013  Sum_probs=116.6

Q ss_pred             cCCCCCCCcceECCceeCCceeecch-hccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhC-----CCCceE
Q psy13219          3 RNVCDRDSGLTVLGTRYRCPVGIAPS-AMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQN-----PSTTLW   76 (193)
Q Consensus         3 ~dv~~~d~~t~~lG~~~~~P~~iaP~-g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~-----~~~~~w   76 (193)
                      +|++++||+|+|||+++++||++||| +++...|+++|.++|++|++.|+++++|++++.+.|+.....     ...+.+
T Consensus        18 ~d~~~vdlst~i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (329)
T d1p0ka_          18 LALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNG   97 (329)
T ss_dssp             CCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCHHHHHHHHHHHHHCSSS
T ss_pred             CChhhCCCCEEECCEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccchhHHHHhhhhhHhhhCCcc
Confidence            68899999999999999999999997 677778999999999999999999999999999888775432     112457


Q ss_pred             EEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCC
Q psy13219         77 LQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECS  156 (193)
Q Consensus        77 fQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (193)
                      +|++...+........++++++|+.++++|+|.+....++...                                     
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~-------------------------------------  140 (329)
T d1p0ka_          98 LIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGD-------------------------------------  140 (329)
T ss_dssp             CEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC-------------------------------------------
T ss_pred             eEEEeeccchhHHHHHHHHHHcCCCEEEecccccchhhhcccc-------------------------------------
Confidence            8888888777777888888999999999999988543322111                                     


Q ss_pred             cchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecC
Q psy13219        157 SGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGI  192 (193)
Q Consensus       157 ~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI  192 (193)
                                .+....|++++|+|+.|++|+++|||
T Consensus       141 ----------~~~~~~~~~i~~i~~~~~~~vivk~v  166 (329)
T d1p0ka_         141 ----------RSFSGALKRIEQICSRVSVPVIVKEV  166 (329)
T ss_dssp             ------------CTTHHHHHHHHHHHCSSCEEEEEE
T ss_pred             ----------ccccchHHHHHHHHHHcCCCcEEEec
Confidence                      02345689999999999999999997

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=4.6e-19  Score=148.44  Aligned_cols=143  Identities=14%  Similarity=0.087  Sum_probs=112.4

Q ss_pred             CC--cCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHH-------hhCC
Q psy13219          1 MM--RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVR-------AQNP   71 (193)
Q Consensus         1 vL--~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~-------~~~~   71 (193)
                      +|  +|++++|++|+|||+++++||++|||++....++.++.++|++|++.|++|++|+.+..+.|+..       +..+
T Consensus        15 ~L~~~d~~~vDlst~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (310)
T d1vcfa1          15 ALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLERPEALRSFRVRKVAP   94 (310)
T ss_dssp             TTCCCCGGGCCCCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHHHCTTTHHHHCCTTTCS
T ss_pred             cCCCCCcccCcCCeEECCEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhcchhhhhhcccchHHhcC
Confidence            46  47899999999999999999999999877777888999999999999999999999877776542       3346


Q ss_pred             CCceEEEEEeecCHHHHHHHHHHH-HHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhccc
Q psy13219         72 STTLWLQMYIFKDRALSLQMVQRA-ERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDI  150 (193)
Q Consensus        72 ~~~~wfQlY~~~dr~~~~~ll~RA-e~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  150 (193)
                      +...|+|+|...+.+...+.+.|+ +..++.++.++++.+.      +....                            
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~----------------------------  140 (310)
T d1vcfa1          95 KALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQ------EAVQR----------------------------  140 (310)
T ss_dssp             SSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHH------HHHTT----------------------------
T ss_pred             CcceeeeecccchhhhhHHHHHHHHHhcCCCeeccccccch------hhhcc----------------------------
Confidence            778999999999888877777777 4579999999998641      10000                            


Q ss_pred             ccccCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecC
Q psy13219        151 SAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGI  192 (193)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI  192 (193)
                                     .......|.|+.+.+..|+.|+++|+|
T Consensus       141 ---------------~~~~~~~~~~~~~~~~~~~~p~~~k~v  167 (310)
T d1vcfa1         141 ---------------GDTDFRGLVERLAELLPLPFPVMVKEV  167 (310)
T ss_dssp             ---------------SCCCCTTHHHHHHHHCSCSSCEEEECS
T ss_pred             ---------------cccccccHHHHHHHHhhccCCceeeee
Confidence                           001233678899999999999999997

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.46  E-value=0.0014  Score=53.46  Aligned_cols=46  Identities=15%  Similarity=0.218  Sum_probs=34.5

Q ss_pred             HhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219         67 RAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVL  112 (193)
Q Consensus        67 ~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~  112 (193)
                      .+..+....-..+....+.+...+..+.++++|+.+|.+.+-+|..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~  142 (312)
T d1gtea2          97 KADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG  142 (312)
T ss_dssp             HHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC
T ss_pred             cccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCc
Confidence            3444555555566566777777788888999999999999999853

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=95.67  E-value=0.007  Score=48.60  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=20.2

Q ss_pred             CCCCCcceECCceeCCceeecc
Q psy13219          6 CDRDSGLTVLGTRYRCPVGIAP   27 (193)
Q Consensus         6 ~~~d~~t~~lG~~~~~P~~iaP   27 (193)
                      +++.++|+|+|.+++.||++|.
T Consensus         3 ~~~~L~~~~~Gl~l~nPi~~aA   24 (311)
T d1ep3a_           3 ENNRLSVKLPGLDLKNPIIPAS   24 (311)
T ss_dssp             CCTTTCEEETTEEESSSEEECT
T ss_pred             CCCcceEEECCEEcCCCcEECC
Confidence            5788999999999999999994

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.09  E-value=0.019  Score=46.27  Aligned_cols=89  Identities=9%  Similarity=0.123  Sum_probs=48.9

Q ss_pred             CCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeec-cCccccHHHHHhhCCCCceEEEE--------
Q psy13219          9 DSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILS-LMSTTSLEEVRAQNPSTTLWLQM--------   79 (193)
Q Consensus         9 d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~ls-t~ss~s~eei~~~~~~~~~wfQl--------   79 (193)
                      +++|+++|.+++.||++|.    +...-++|  ..+.+.+.|.-+++- |.+..+     ...-..++.|++        
T Consensus         1 sL~v~~~Gl~l~nPi~~aa----G~~~~~~~--~~~~~~~~g~g~vv~ktit~~p-----~~gnp~Pr~~~~~~~~~N~~   69 (312)
T d2b4ga1           1 SLKVNILGHEFSNPFMNAA----GVLCTTEE--DLRRMTESESGSLIGKSCTLAP-----RTGNPEPRYFGLPLGSINSM   69 (312)
T ss_dssp             CCCEEETTEEESSSEEECT----TSSCSSHH--HHHHHHHSSCSCEEEEEECSSC-----BCCSCSCCEEEETTEEEECC
T ss_pred             CCcEEECCEECCCCcEeCc----CCCCCCHH--HHHHHHHcCCCEEEeCcccccC-----CCCCCCCeEEecCchheecc
Confidence            5799999999999999974    22222333  344555556655543 332221     111124566666        


Q ss_pred             -EeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219         80 -YIFKDRALSLQMVQRAERSGYSAIVITMD  108 (193)
Q Consensus        80 -Y~~~dr~~~~~ll~RAe~AG~~AlvvTVD  108 (193)
                       +.+...+...+.++++++..-+-+++.|-
T Consensus        70 G~~n~G~~~~~~~l~~~~~~~~~pii~si~   99 (312)
T d2b4ga1          70 GLPNLGVDFYLSYAAQTHDYSRKPLFLSMS   99 (312)
T ss_dssp             CCCBSCHHHHHHHHHHTCCTTTCCEEEEEC
T ss_pred             ccCcchHHHHHHHHHHhhhccccceecccc
Confidence             22233455555565555444445666664

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=94.95  E-value=0.13  Score=40.85  Aligned_cols=18  Identities=17%  Similarity=0.169  Sum_probs=16.5

Q ss_pred             CcceECCceeCCceeecc
Q psy13219         10 SGLTVLGTRYRCPVGIAP   27 (193)
Q Consensus        10 ~~t~~lG~~~~~P~~iaP   27 (193)
                      ++|+++|.++..||++|.
T Consensus         2 Ls~~~~Gl~l~nPi~~aa   19 (311)
T d1juba_           2 LNTTFANAKFANPFMNAS   19 (311)
T ss_dssp             CCEEETTEEESSSEEECT
T ss_pred             eeEEECCEecCCCCEECC
Confidence            689999999999999984

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=85.46  E-value=0.24  Score=40.95  Aligned_cols=92  Identities=14%  Similarity=0.049  Sum_probs=56.0

Q ss_pred             CCCCCcceEC--------CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhC----CCC
Q psy13219          6 CDRDSGLTVL--------GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQN----PST   73 (193)
Q Consensus         6 ~~~d~~t~~l--------G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~----~~~   73 (193)
                      +++|+++++.        ...+..||+-|||-      -=+|..+|.+-++.|-..++  .-..++|+..+..    ...
T Consensus        28 ~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMD------TVt~~~mA~~la~~Gglgvi--hR~~~ie~~~~~~~~~~~~~   99 (362)
T d1pvna1          28 SNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQ------SVSGEKMAIALAREGGISFI--FGSQSIESQAAMVHAVKNFR   99 (362)
T ss_dssp             GGCBCCEECSCEETTSCCSCEESSSEEECSCT------TTCSHHHHHHHHHTTCEEEE--CCSSCHHHHHHHHHHHHTCC
T ss_pred             cceeeeeEEEeeccccccccccCCcEEecCCC------CcCCHHHHHHHHHCCCEEEE--eecCCHHHHHHHhhhhhhcc
Confidence            5788998874        55689999999973      12567888888999988888  3456777665431    111


Q ss_pred             ceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219         74 TLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD  108 (193)
Q Consensus        74 ~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD  108 (193)
                      ..........|..   +.++...++|+..|++++-
T Consensus       100 ~~~~~~~~~~~~~---~~~~~L~~ag~d~i~IDvA  131 (362)
T d1pvna1         100 YLVGAGINTRDFR---ERVPALVEAGADVLCIDSS  131 (362)
T ss_dssp             CCCEEEECSSSHH---HHHHHHHHHTCSEEEECCS
T ss_pred             cccccccchhhhH---HHHHHHhhcCceEEeechh
Confidence            1111222222222   2333335778887665443

>d1nh8a2 d.58.5.3 (A:211-284) ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GlnB-like
family: ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
domain: ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.14  E-value=1.1  Score=28.70  Aligned_cols=47  Identities=17%  Similarity=0.281  Sum_probs=38.0

Q ss_pred             cccHHHHHhhCCC----------CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219         60 TTSLEEVRAQNPS----------TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT  106 (193)
Q Consensus        60 s~s~eei~~~~~~----------~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT  106 (193)
                      ...+|+|.+..|+          ..-|+-+...-+++...+++.+-+++|++.|+++
T Consensus        11 ~~~L~~v~~ilPg~~~PTVs~L~~~~wvAV~~vv~e~~v~~~i~~Lk~~GA~~Ilv~   67 (74)
T d1nh8a2          11 RSALKKATAITPGLESPTIAPLADPDWVAIRALVPRRDVNGIMDELAAIGAKAILAS   67 (74)
T ss_dssp             GGGHHHHHHHCCCSSSCEEEECSSTTEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHhCCCCCCCccccccCCCEEEEEEEEeHHHHHHHHHHHHHcCCCeEEEe
Confidence            4567777666442          2349999999999999999999999999999986

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.01  E-value=2.9  Score=34.18  Aligned_cols=54  Identities=17%  Similarity=0.115  Sum_probs=41.0

Q ss_pred             CCCCCcceEC-CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHH
Q psy13219          6 CDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVR   67 (193)
Q Consensus         6 ~~~d~~t~~l-G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~   67 (193)
                      .++|++++|- ..++..||+-|||=      -=+|..+|.+-++.|-..++--  ..++|+.+
T Consensus        30 rdVdls~~~~~~~~l~iPIiss~MD------tV~~~~mA~~la~~Gglgvlhr--~~~~e~~~   84 (368)
T d2cu0a1          30 KDVDVSTRITPNVKLNIPILSAAMD------TVTEWEMAVAMAREGGLGVIHR--NMGIEEQV   84 (368)
T ss_dssp             TTCBCCEEEETTEEESSSEEECCCT------TTCSHHHHHHHHHTTCEEEECS--SSCHHHHH
T ss_pred             hhceeeEEeeCCcccCCCEEeCCCC------CcCCHHHHHHHHHCCCeeEecc--cCCHHHHH
Confidence            4678999996 57999999999962      2256778889999999988864  45666543

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.22  E-value=1.4  Score=36.13  Aligned_cols=94  Identities=17%  Similarity=0.122  Sum_probs=56.3

Q ss_pred             CCCCCcceEC-CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhC-----CCCceEEEE
Q psy13219          6 CDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQN-----PSTTLWLQM   79 (193)
Q Consensus         6 ~~~d~~t~~l-G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~-----~~~~~wfQl   79 (193)
                      +++|+++.|- ...+..||+-|||-      .-.|..+|.+-.++|-..++--  ..++||..+..     ..+......
T Consensus        29 ~~vdl~~~it~~~~~~iPIIsA~MD------tV~~~~mA~~ls~~Gglgvlhr--~~~~~e~~~~~~~~~~~~~~~~v~a  100 (365)
T d1zfja1          29 NEVDLKTKLADNLTLNIPIITAAMD------TVTGSKMAIAIARAGGLGVIHK--NMSITEQAEEVRKVKRSEGRLLVAA  100 (365)
T ss_dssp             GGCCCCEEEETTEEESSSEEECCCT------TTCSHHHHHHHHHTTCEEEECC--SSCHHHHHHHHHHHHHHTSCBCCEE
T ss_pred             hHceeeEEeeCCcccCCCEEECCCC------CcCCHHHHHHHHHCCCceEEcC--ccCHHHHHHHhhhhhhccCceEEEE
Confidence            5789999984 57999999999973      2356778888889998888853  44565554321     011111122


Q ss_pred             EeecCHHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219         80 YIFKDRALSLQMVQRAERSGYSAIVITMDTA  110 (193)
Q Consensus        80 Y~~~dr~~~~~ll~RAe~AG~~AlvvTVD~p  110 (193)
                      -+.-..+ ..+.++..-++|++.|+|  |+.
T Consensus       101 avGv~~~-~~er~~~l~~agvd~ivI--D~A  128 (365)
T d1zfja1         101 AVGVTSD-TFERAEALFEAGADAIVI--DTA  128 (365)
T ss_dssp             EECSSTT-HHHHHHHHHHHTCSEEEE--CCS
T ss_pred             EeccCch-HHHHHHHHHHcCCCEEEE--ECC
Confidence            2211111 123344445789998765  654