Psyllid ID: psy13265

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKNS
ccccccccHHHHHHHcccccccccEEEEEEcccccccccccccEEEEEEccEEEEccccccEEccccccEEEEEEEEcccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcc
HHHHHHccHHHHHHHHHHHHHccccEEEEcccccccccHHHcccEEEEEccEEEEEEEEEEEEccccccEEEEEEEccccccccHHHHEEEEEEEcccccEEEEEEHHHHHHHHHHHHHHHHHHHHcccEEccEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcEccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccc
mpvviagnEAQQKKYLGRLVEEPIVAAycvtepgagsdvngvktkavkkgdewilNGQKMWITNGGVANWYFVLArtnpdpkcpaskaftgfiverdtpgltpgrkvAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVqvfggngfnsdypveKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKNS
mpvviagneaqqKKYLGRLVEEPIVAAYCVtepgagsdvngvkTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQvfggngfnsdyPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKNS
MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYasvakalaadvankcaTDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKNS
************KKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII******
MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA*IE*****
MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKNS
MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKA***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRKVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
Q9VSA3419 Probable medium-chain spe yes N/A 0.987 0.577 0.681 1e-112
P11310421 Medium-chain specific acy yes N/A 0.995 0.579 0.618 1e-100
A5A6I0421 Medium-chain specific acy yes N/A 0.995 0.579 0.618 1e-100
P41367421 Medium-chain specific acy yes N/A 0.995 0.579 0.621 1e-100
Q8HXY8421 Medium-chain specific acy N/A N/A 0.995 0.579 0.608 3e-99
P08503421 Medium-chain specific acy yes N/A 0.995 0.579 0.611 4e-99
P45952421 Medium-chain specific acy yes N/A 0.995 0.579 0.608 1e-98
Q3SZB4421 Medium-chain specific acy yes N/A 0.991 0.577 0.613 4e-98
Q22347417 Probable medium-chain spe yes N/A 0.971 0.570 0.578 2e-89
A8XNF0417 Probable medium-chain spe N/A N/A 0.971 0.570 0.578 2e-89
>sp|Q9VSA3|ACADM_DROME Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG12262 PE=1 SV=1 Back     alignment and function desciption
 Score =  403 bits (1036), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/289 (68%), Positives = 222/289 (76%), Gaps = 47/289 (16%)

Query: 2   PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMW 61
           PV+++GN+ Q+KKYLGRL+EEP+VAAYCVTEPGAGSDV+G+KT+A KKGDEW++NGQKMW
Sbjct: 128 PVILSGNKEQKKKYLGRLLEEPLVAAYCVTEPGAGSDVSGIKTRAEKKGDEWVINGQKMW 187

Query: 62  ITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK--------------- 106
           ITNGGVANWYFVLARTNPDPKCP SKAFTGFIVERD+PGLTPGRK               
Sbjct: 188 ITNGGVANWYFVLARTNPDPKCPPSKAFTGFIVERDSPGLTPGRKELNMGQRASDTRGIT 247

Query: 107 --------------------------------VAAGAVGLAQRCLDEATKYALERKAFGV 134
                                           VAAGAVGLAQRCLDEA KYALERK FGV
Sbjct: 248 FEDVRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRCLDEALKYALERKTFGV 307

Query: 135 PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATD 194
           PIA HQAV FMLADMAIG+E SRL W  +A E+D GRRN+ YAS+AK  AAD+ANK A+D
Sbjct: 308 PIAYHQAVQFMLADMAIGVETSRLAWRLSAWEIDQGRRNSYYASIAKCHAADMANKIASD 367

Query: 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAK 243
           AVQ+FGGNGFNS+YPVEKLMRDAKIYQIYEGT+QIQRLI+SR + E AK
Sbjct: 368 AVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISRNMYEAAK 416
This enzyme is specific for acyl chain lengths of 4 to 16.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 3EC: .EC: 9EC: 9EC: .EC: 3
>sp|P11310|ACADM_HUMAN Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADM PE=1 SV=1 Back     alignment and function description
>sp|A5A6I0|ACADM_PANTR Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pan troglodytes GN=ACADM PE=2 SV=1 Back     alignment and function description
>sp|P41367|ACADM_PIG Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADM PE=1 SV=3 Back     alignment and function description
>sp|Q8HXY8|ACADM_MACFA Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADM PE=2 SV=1 Back     alignment and function description
>sp|P08503|ACADM_RAT Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadm PE=1 SV=1 Back     alignment and function description
>sp|P45952|ACADM_MOUSE Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadm PE=1 SV=1 Back     alignment and function description
>sp|Q3SZB4|ACADM_BOVIN Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADM PE=2 SV=1 Back     alignment and function description
>sp|Q22347|ACADM_CAEEL Probable medium-chain specific acyl-CoA dehydrogenase 10, mitochondrial OS=Caenorhabditis elegans GN=acdh-10 PE=2 SV=1 Back     alignment and function description
>sp|A8XNF0|ACAD1_CAEBR Probable medium-chain specific acyl-CoA dehydrogenase 1, mitochondrial OS=Caenorhabditis briggsae GN=CBG15946 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
170043822 422 acyl-coa dehydrogenase [Culex quinquefas 0.987 0.573 0.712 1e-114
58387602 419 AGAP005662-PA [Anopheles gambiae str. PE 0.991 0.579 0.713 1e-114
312383488 1028 hypothetical protein AND_03389 [Anophele 0.995 0.237 0.701 1e-114
193706910 419 PREDICTED: probable medium-chain specifi 1.0 0.584 0.708 1e-112
157105307 420 acyl-coa dehydrogenase [Aedes aegypti] g 0.987 0.576 0.702 1e-112
346472323 420 hypothetical protein [Amblyomma maculatu 0.971 0.566 0.691 1e-111
24660351 419 CG12262 [Drosophila melanogaster] gi|283 0.987 0.577 0.681 1e-110
195019873 419 GH14704 [Drosophila grimshawi] gi|193898 0.995 0.582 0.676 1e-110
242019871 419 ATP-binding cassette subfamily E, member 0.995 0.582 0.687 1e-110
195378841 420 GJ11482 [Drosophila virilis] gi|19540419 0.987 0.576 0.685 1e-109
>gi|170043822|ref|XP_001849570.1| acyl-coa dehydrogenase [Culex quinquefasciatus] gi|167867122|gb|EDS30505.1| acyl-coa dehydrogenase [Culex quinquefasciatus] Back     alignment and taxonomy information
 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/289 (71%), Positives = 229/289 (79%), Gaps = 47/289 (16%)

Query: 2   PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMW 61
           PV+IAGNEAQ+KKYLGRL+EEP+VAAYCVTEPGAGSDVNGV+T+A KKGDEW++NGQKMW
Sbjct: 131 PVIIAGNEAQKKKYLGRLIEEPLVAAYCVTEPGAGSDVNGVRTRAEKKGDEWVINGQKMW 190

Query: 62  ITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK--------------- 106
           ITNGGVANWYFVLARTNPDPKCPASKAFTGFIVER+TPGLTPGRK               
Sbjct: 191 ITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERETPGLTPGRKEQNMGQRASDTRGIT 250

Query: 107 --------------------------------VAAGAVGLAQRCLDEATKYALERKAFGV 134
                                           VAAGAVGLAQRCLDEA KYALERKAFGV
Sbjct: 251 FEDVRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRCLDEAMKYALERKAFGV 310

Query: 135 PIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATD 194
           PIAAHQAV+FMLADMAIG+E +RL  MK+A EVD GRRN+ YAS+AK  AAD+ANK A+D
Sbjct: 311 PIAAHQAVSFMLADMAIGVETARLITMKSAWEVDQGRRNSYYASIAKCYAADMANKVASD 370

Query: 195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAK 243
           AVQVFGGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLI+SR +I+ AK
Sbjct: 371 AVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISRNMIDAAK 419

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|58387602|ref|XP_315683.2| AGAP005662-PA [Anopheles gambiae str. PEST] gi|55238468|gb|EAA11811.3| AGAP005662-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312383488|gb|EFR28556.1| hypothetical protein AND_03389 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|193706910|ref|XP_001952123.1| PREDICTED: probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|157105307|ref|XP_001648811.1| acyl-coa dehydrogenase [Aedes aegypti] gi|108869037|gb|EAT33262.1| AAEL014452-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|346472323|gb|AEO36006.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|24660351|ref|NP_648149.1| CG12262 [Drosophila melanogaster] gi|28376845|sp|Q9VSA3.1|ACADM_DROME RecName: Full=Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial; Short=MCAD; Flags: Precursor gi|7295201|gb|AAF50524.1| CG12262 [Drosophila melanogaster] gi|19528339|gb|AAL90284.1| LD22634p [Drosophila melanogaster] gi|220956380|gb|ACL90733.1| CG12262-PA [synthetic construct] gi|345547199|gb|AEO11957.1| CG12262-PA [Drosophila melanogaster] gi|345547201|gb|AEO11958.1| CG12262-PA [Drosophila melanogaster] gi|345547203|gb|AEO11959.1| CG12262-PA [Drosophila melanogaster] gi|345547205|gb|AEO11960.1| CG12262-PA [Drosophila melanogaster] gi|345547207|gb|AEO11961.1| CG12262-PA [Drosophila melanogaster] gi|345547209|gb|AEO11962.1| CG12262-PA [Drosophila melanogaster] gi|345547211|gb|AEO11963.1| CG12262-PA [Drosophila melanogaster] gi|345547213|gb|AEO11964.1| CG12262-PA [Drosophila melanogaster] gi|345547215|gb|AEO11965.1| CG12262-PA [Drosophila melanogaster] gi|345547217|gb|AEO11966.1| CG12262-PA [Drosophila melanogaster] gi|345547219|gb|AEO11967.1| CG12262-PA [Drosophila melanogaster] gi|345547221|gb|AEO11968.1| CG12262-PA [Drosophila melanogaster] gi|345547223|gb|AEO11969.1| CG12262-PA [Drosophila melanogaster] gi|345547225|gb|AEO11970.1| CG12262-PA [Drosophila melanogaster] gi|345547227|gb|AEO11971.1| CG12262-PA [Drosophila melanogaster] gi|345547229|gb|AEO11972.1| CG12262-PA [Drosophila melanogaster] gi|345547231|gb|AEO11973.1| CG12262-PA [Drosophila melanogaster] gi|345547233|gb|AEO11974.1| CG12262-PA [Drosophila melanogaster] gi|345547235|gb|AEO11975.1| CG12262-PA [Drosophila melanogaster] gi|345547237|gb|AEO11976.1| CG12262-PA [Drosophila melanogaster] gi|345547239|gb|AEO11977.1| CG12262-PA [Drosophila melanogaster] gi|345547241|gb|AEO11978.1| CG12262-PA [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195019873|ref|XP_001985073.1| GH14704 [Drosophila grimshawi] gi|193898555|gb|EDV97421.1| GH14704 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|242019871|ref|XP_002430382.1| ATP-binding cassette subfamily E, member 1 [Pediculus humanus corporis] gi|212515506|gb|EEB17644.1| ATP-binding cassette subfamily E, member 1 [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|195378841|ref|XP_002048190.1| GJ11482 [Drosophila virilis] gi|195404194|ref|XP_002060435.1| GJ19560 [Drosophila virilis] gi|194140953|gb|EDW57380.1| GJ19560 [Drosophila virilis] gi|194155348|gb|EDW70532.1| GJ11482 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
FB|FBgn0035811419 CG12262 [Drosophila melanogast 0.469 0.274 0.773 3.7e-99
ZFIN|ZDB-GENE-040426-1945426 acadm "acyl-Coenzyme A dehydro 0.473 0.272 0.725 3.4e-92
UNIPROTKB|B7Z9I1385 ACADM "Medium-chain-specific a 0.473 0.301 0.708 2.7e-90
UNIPROTKB|P11310421 ACADM "Medium-chain specific a 0.473 0.275 0.708 2.7e-90
UNIPROTKB|Q5T4U5454 ACADM "Medium-chain-specific a 0.473 0.255 0.708 2.7e-90
UNIPROTKB|P41367421 ACADM "Medium-chain specific a 0.473 0.275 0.708 5.6e-90
UNIPROTKB|Q4R5B7421 Q4R5B7 "Macaca fascicularis br 0.473 0.275 0.708 6.3e-89
UNIPROTKB|Q8HXY8421 ACADM "Medium-chain specific a 0.473 0.275 0.708 6.3e-89
UNIPROTKB|F1P6W6421 ACADM "Uncharacterized protein 0.473 0.275 0.725 1.3e-88
UNIPROTKB|J9P5S2335 ACADM "Uncharacterized protein 0.473 0.346 0.725 1.3e-88
FB|FBgn0035811 CG12262 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 515 (186.3 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
 Identities = 92/119 (77%), Positives = 107/119 (89%)

Query:     2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMW 61
             PV+++GN+ Q+KKYLGRL+EEP+VAAYCVTEPGAGSDV+G+KT+A KKGDEW++NGQKMW
Sbjct:   128 PVILSGNKEQKKKYLGRLLEEPLVAAYCVTEPGAGSDVSGIKTRAEKKGDEWVINGQKMW 187

Query:    62 ITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRKVAAGAVGLAQRCLD 120
             ITNGGVANWYFVLARTNPDPKCP SKAFTGFIVERD+PGLTPGRK     + + QR  D
Sbjct:   188 ITNGGVANWYFVLARTNPDPKCPPSKAFTGFIVERDSPGLTPGRK----ELNMGQRASD 242
GO:0005739 "mitochondrion" evidence=ISS;IDA
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=ISS
GO:0005759 "mitochondrial matrix" evidence=ISS
GO:0006635 "fatty acid beta-oxidation" evidence=ISS
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
GO:0005875 "microtubule associated complex" evidence=IDA
ZFIN|ZDB-GENE-040426-1945 acadm "acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z9I1 ACADM "Medium-chain-specific acyl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P11310 ACADM "Medium-chain specific acyl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T4U5 ACADM "Medium-chain-specific acyl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P41367 ACADM "Medium-chain specific acyl-CoA dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R5B7 Q4R5B7 "Macaca fascicularis brain cDNA clone: QtrA-12403, similar to human acyl-Coenzyme A dehydrogenase, C-4 to C-12 straightchain (ACADM), nuclear gene encoding mitochondrialprotein, mRNA, RefSeq: NM_000016.2" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXY8 ACADM "Medium-chain specific acyl-CoA dehydrogenase, mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6W6 ACADM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P5S2 ACADM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46703ACDP_MYCLE1, ., 3, ., 9, 9, ., -0.39720.96320.6066yesN/A
P63427ACDP_MYCTU1, ., 3, ., 9, 9, ., -0.40410.96320.6066yesN/A
P52042ACDS_CLOAB1, ., 3, ., 8, ., 10.35710.93870.6068yesN/A
P63428ACDP_MYCBO1, ., 3, ., 9, 9, ., -0.40410.96320.6066yesN/A
P45867ACDA_BACSU1, ., 3, ., 9, 9, ., -0.41540.95510.6174yesN/A
P41367ACADM_PIG1, ., 3, ., 9, 9, ., 30.62190.99590.5795yesN/A
A5A6I0ACADM_PANTR1, ., 3, ., 9, 9, ., 30.61850.99590.5795yesN/A
P08503ACADM_RAT1, ., 3, ., 9, 9, ., 30.61160.99590.5795yesN/A
P45952ACADM_MOUSE1, ., 3, ., 9, 9, ., 30.60820.99590.5795yesN/A
Q22347ACADM_CAEEL1, ., 3, ., 9, 9, ., 30.57890.97140.5707yesN/A
P11310ACADM_HUMAN1, ., 3, ., 9, 9, ., 30.61850.99590.5795yesN/A
Q3SZB4ACADM_BOVIN1, ., 3, ., 9, 9, ., 30.61370.99180.5771yesN/A
Q9VSA3ACADM_DROME1, ., 3, ., 9, 9, ., 30.68160.98770.5775yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 1e-153
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 2e-92
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 3e-91
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 9e-74
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 5e-66
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 2e-61
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 2e-59
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 7e-55
pfam00441150 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, 1e-48
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 3e-48
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 4e-47
cd01153407 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena 3e-42
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 5e-40
PRK12341381 PRK12341, PRK12341, putative acyl-CoA dehydrogenas 3e-39
cd01152380 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd 1e-33
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 9e-32
cd01155394 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil 4e-29
TIGR03207372 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co 2e-26
cd01154418 cd01154, AidB, Proteins involved in DNA damage res 2e-26
PRK03354380 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen 6e-23
PLN02876822 PLN02876, PLN02876, acyl-CoA dehydrogenase 2e-20
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 6e-20
TIGR03204395 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, 1e-17
pfam08028134 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, 4e-15
TIGR03203378 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, 4e-13
PTZ00456 622 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis 1e-08
PTZ00456 622 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis 5e-06
cd01150 610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 4e-05
PRK11561538 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; 1e-04
TIGR04022391 TIGR04022, sulfur_SfnB, sulfur acquisition oxidore 3e-04
cd01159370 cd01159, NcnH, Naphthocyclinone hydroxylase 0.001
PLN02443 664 PLN02443, PLN02443, acyl-coenzyme A oxidase 0.002
PTZ00460 646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 0.002
PRK13026 774 PRK13026, PRK13026, acyl-CoA dehydrogenase; Review 0.002
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information 
 Score =  429 bits (1105), Expect = e-153
 Identities = 188/288 (65%), Positives = 216/288 (75%), Gaps = 47/288 (16%)

Query: 1   MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
           MPV+I+GN+ Q+KKYLGR+ EEP++ AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKM
Sbjct: 91  MPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 150

Query: 61  WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
           WITNGG ANWYF+LAR++PDPKCPASKAFTGFIVE DTPG+ PGRK              
Sbjct: 151 WITNGGKANWYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGI 210

Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
                                            VAAGAVGLAQR LDEATKYALERK FG
Sbjct: 211 TFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFG 270

Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193
             IA HQAV+FMLADMA+ +E +RL + +AA EVD GRRNT YAS+AKA AAD+AN+ AT
Sbjct: 271 KLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKAFAADIANQLAT 330

Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEK 241
           DAVQ+FGGNGFNS+YPVEKLMRDAKIYQIYEGT+QIQRLI+SR  + K
Sbjct: 331 DAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLGK 378

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>gnl|CDD|219705 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family Back     alignment and domain information
>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase Back     alignment and domain information
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 245
KOG0140|consensus408 100.0
KOG0139|consensus398 100.0
KOG0141|consensus421 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
PLN02636 686 acyl-coenzyme A oxidase 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
PTZ00460 646 acyl-CoA dehydrogenase; Provisional 100.0
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
PLN02312 680 acyl-CoA oxidase 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
PTZ00456 622 acyl-CoA dehydrogenase; Provisional 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
KOG0137|consensus 634 100.0
PLN02443 664 acyl-coenzyme A oxidase 100.0
cd01150 610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
KOG0138|consensus432 100.0
KOG1469|consensus392 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
PTZ00457 520 acyl-CoA dehydrogenase; Provisional 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
KOG0135|consensus 661 99.95
KOG0136|consensus 670 99.93
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.9
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.88
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.8
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.69
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 99.39
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.24
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 98.42
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 96.83
PTZ00457520 acyl-CoA dehydrogenase; Provisional 94.05
KOG0137|consensus634 89.14
>KOG0140|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.8e-54  Score=346.25  Aligned_cols=243  Identities=74%  Similarity=1.159  Sum_probs=236.3

Q ss_pred             ChhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCC
Q psy13265          1 MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPD   80 (245)
Q Consensus         1 ~~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~   80 (245)
                      +||..+|+++||++||+++....++.+.++|||++|||+..+.|+|++.+|.|+|||.|.|+||+.+|+|++|++|++++
T Consensus       118 ~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~anwyfVlaRtd~~  197 (408)
T KOG0140|consen  118 WPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHANWYFVLARTDPD  197 (408)
T ss_pred             hhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccceEEEEEecCCC
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHH
Q psy13265         81 PKCPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVG  113 (245)
Q Consensus        81 ~~~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG  113 (245)
                      .++|..+++..|+|+.++||++...-                                               ++++++|
T Consensus       198 pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tRp~vAa~alG  277 (408)
T KOG0140|consen  198 PKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTRPNVAAGALG  277 (408)
T ss_pred             CCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhhccCCCCchhhhhhH
Confidence            88889999999999999999987654                                               8999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q psy13265        114 LAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT  193 (245)
Q Consensus       114 ~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~  193 (245)
                      .+++++|++.+|+..|++||.+++++|.+|+.|+||+..++.+|.+.++++.++|++.......+++|.++++.|.+++.
T Consensus       278 ~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSiAK~fA~D~an~~at  357 (408)
T KOG0140|consen  278 LAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASIAKLFATDTANQAAT  357 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             HHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHHhh
Q psy13265        194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAK  243 (245)
Q Consensus       194 ~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~~  243 (245)
                      .++|++||.||.+++|.|+++||++...+.+|++++++..|+|.+|.+++
T Consensus       358 ~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~~  407 (408)
T KOG0140|consen  358 NAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKFA  407 (408)
T ss_pred             HHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999876

>KOG0139|consensus Back     alignment and domain information
>KOG0141|consensus Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>KOG0137|consensus Back     alignment and domain information
>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>KOG0138|consensus Back     alignment and domain information
>KOG1469|consensus Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>KOG0135|consensus Back     alignment and domain information
>KOG0136|consensus Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG0137|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 9e-94
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 1e-93
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 4e-93
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 9e-93
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 2e-92
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 3e-51
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 4e-48
2dvl_A372 Crystal Structure Of Project Tt0160 From Thermus Th 5e-40
1buc_A383 Three-Dimensional Structure Of Butyryl-Coa Dehydrog 2e-39
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 1e-37
1ivh_A394 Structure Of Human Isovaleryl-coa Dehydrogenase At 7e-36
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 7e-35
2z1q_A 577 Crystal Structure Of Acyl Coa Dehydrogenase Length 3e-33
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 4e-33
1ws9_A387 Crystal Structure Of Project Id Tt0172 From Thermus 7e-33
2jif_A404 Structure Of Human Short-Branched Chain Acyl-Coa De 2e-31
1rx0_A393 Crystal Structure Of Isobutyryl-Coa Dehydrogenase C 2e-31
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 3e-30
3owa_A 597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 3e-27
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 5e-27
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 1e-23
2uxw_A 607 Crystal Structure Of Human Very Long Chain Acyl-coa 2e-23
3b96_A 587 Structural Basis For Substrate Fatty-Acyl Chain Spe 2e-23
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 4e-21
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 4e-21
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 5e-21
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 1e-20
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 1e-20
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 1e-20
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 1e-20
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 2e-20
2eba_A385 Crystal Structure Of The Putative Glutaryl-coa Dehy 8e-20
3r7k_A403 Crystal Structure Of A Probable Acyl Coa Dehydrogen 3e-19
3oib_A403 Crystal Structure Of A Putative Acyl-Coa Dehydrogen 2e-18
4hr3_A415 Structure Of A Putative Acyl-Coa Dehydrogenase From 9e-18
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 1e-17
2wbi_A428 Crystal Structure Of Human Acyl-Coa Dehydrogenase 1 5e-15
1r2j_A366 Fkbi For Biosynthesis Of Methoxymalonyl Extender Un 2e-09
2reh_A439 Mechanistic And Structural Analyses Of The Roles Of 6e-09
2c12_A439 Crystal Structure Of Nitroalkane Oxidase In Complex 2e-08
3d9g_A438 Nitroalkane Oxidase: Wild Type Crystallized In A Tr 2e-08
2zaf_A439 Mechanistic And Structural Analyses Of The Roles Of 2e-08
3d9f_A438 Nitroalkane Oxidase: Active Site Mutant S276a Cryst 2e-08
3mkh_A438 Podospora Anserina Nitroalkane Oxidase Length = 438 2e-08
3d9d_A438 Nitroalkane Oxidase: Mutant D402n Crystallized With 3e-08
2c0u_A439 Crystal Structure Of A Covalent Complex Of Nitroalk 2e-07
1w07_A 659 Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65 3e-04
3djl_A541 Crystal Structure Of Alkylation Response Protein E. 4e-04
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure 
Iteration: 1

 Score =  339 bits (869), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 170/291 (58%), Positives = 202/291 (69%), Gaps = 47/291 (16%)
Query: 1   MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
           MP++IAGN+ Q+KKYLGR+ EEP++ AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKM
Sbjct: 106 MPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 165
Query: 61  WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
           WITNGG ANWYF+LAR++PDPK PA+KAFTGFIVE DTPG+  GRK              
Sbjct: 166 WITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGI 225
Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
                                            VAAGAVGLAQR LDEATKYALERK FG
Sbjct: 226 VFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFG 285
Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYXXXXXXXXXXXXXXXXT 193
             +  HQA++FMLA+MA+ +E +R+++ +AA EVD GRRNT Y                T
Sbjct: 286 KLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLAT 345
Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKN 244
           DAVQ+ GGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLIV+R  I+K KN
Sbjct: 346 DAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDKYKN 396
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372 Back     alignment and structure
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394 Back     alignment and structure
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387 Back     alignment and structure
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404 Back     alignment and structure
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385 Back     alignment and structure
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403 Back     alignment and structure
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403 Back     alignment and structure
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428 Back     alignment and structure
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366 Back     alignment and structure
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409 And Asp402 In The Reaction Of The Flavoprotein Nitroalkane Oxidase Length = 439 Back     alignment and structure
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With Spermine, A Competitive Inhibitor Length = 439 Back     alignment and structure
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped State Forming A Cyanoadduct With Fad Length = 438 Back     alignment and structure
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409 And Asp402 In The Reaction Of The Flavoprotein Nitroalkane Oxidase Length = 439 Back     alignment and structure
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized With 1- Nitrohexane Length = 438 Back     alignment and structure
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase Length = 438 Back     alignment and structure
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With 1-Nitrohexane Length = 438 Back     alignment and structure
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane Oxidase Trapped During Substrate Turnover Length = 439 Back     alignment and structure
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659 Back     alignment and structure
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli Aidb Length = 541 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 1e-141
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 1e-135
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 1e-125
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 1e-115
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 1e-114
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 1e-113
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 1e-112
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 1e-112
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 1e-112
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 1e-111
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 1e-110
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 1e-108
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 1e-107
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 1e-107
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 1e-106
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 1e-102
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 1e-99
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 1e-99
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 1e-94
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 2e-93
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 3e-93
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 4e-92
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 2e-88
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 2e-85
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 6e-85
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 3e-84
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 1e-83
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 5e-83
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 1e-79
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 3e-52
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 2e-39
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 6e-31
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 2e-26
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 3e-26
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 5e-20
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 5e-26
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 3e-20
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 3e-22
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 2e-18
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 6e-18
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 2e-10
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
 Score =  401 bits (1032), Expect = e-141
 Identities = 179/291 (61%), Positives = 214/291 (73%), Gaps = 47/291 (16%)

Query: 1   MPVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKM 60
           MP++IAGN+ Q+KKYLGR+ EEP++ AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKM
Sbjct: 106 MPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKM 165

Query: 61  WITNGGVANWYFVLARTNPDPKCPASKAFTGFIVERDTPGLTPGRK-------------- 106
           WITNGG ANWYF+LAR++PDPK PA+KAFTGFIVE DTPG+  GRK              
Sbjct: 166 WITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGI 225

Query: 107 ---------------------------------VAAGAVGLAQRCLDEATKYALERKAFG 133
                                            VAAGAVGLAQR LDEATKYALERK FG
Sbjct: 226 VFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFG 285

Query: 134 VPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCAT 193
             +  HQA++FMLA+MA+ +E +R+++ +AA EVD GRRNT YAS+AKA A D+AN+ AT
Sbjct: 286 KLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLAT 345

Query: 194 DAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKN 244
           DAVQ+ GGNGFN++YPVEKLMRDAKIYQIY GT+QIQRLIV+R  I+K KN
Sbjct: 346 DAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKYKN 396
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515 Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422 Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481 Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394 Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490 Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 100.0
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 100.0
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 99.96
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.9
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 95.98
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 85.2
2z1q_A577 Acyl-COA dehydrogenase; FAD, structural genomics, 83.47
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
Probab=100.00  E-value=8.3e-49  Score=341.12  Aligned_cols=242  Identities=73%  Similarity=1.171  Sum_probs=225.0

Q ss_pred             hhhhcCCHHHHHHHhhhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCeEEEeeeeecccCCCcccEEEEEEEeCCCC
Q psy13265          2 PVVIAGNEAQQKKYLGRLVEEPIVAAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWYFVLARTNPDP   81 (245)
Q Consensus         2 ~l~~~g~~~~k~~~l~~~~~g~~~~~~~~tE~~~gsd~~~~~~~a~~~~~g~~l~G~K~~~s~~~~ad~~lv~a~~~~~~   81 (245)
                      +|+.+|+++||++|||++.+|+.++++++|||+.|||..++.+++++++|||+|||+|.|+|++.+||+++|++++++++
T Consensus       107 ~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~~~  186 (396)
T 1egd_A          107 PIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP  186 (396)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETTTTCSEEEEEEECCCCT
T ss_pred             HHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccCCcccCEEEEEEEeCCCC
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999987542


Q ss_pred             CCCCCCCeEEEEEeCCCCCcccchh-----------------------------------------------hhhhhHHH
Q psy13265         82 KCPASKAFTGFIVERDTPGLTPGRK-----------------------------------------------VAAGAVGL  114 (245)
Q Consensus        82 ~~~~~~~~~~f~V~~~~~Gv~~~~~-----------------------------------------------~~~~~lG~  114 (245)
                      +.+++.++++|+||++.|||++.+.                                               +++.++|+
T Consensus       187 ~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~  266 (396)
T 1egd_A          187 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGL  266 (396)
T ss_dssp             TSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111268999999999999998543                                               56788999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy13265        115 AQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAADVANKCATD  194 (245)
Q Consensus       115 ~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~  194 (245)
                      ++++++.+++|++.|++||+|+.++|.+|++|+++.+.++++++++++++..++.+.+....++++|.++++.+.++++.
T Consensus       267 a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~a~~~a~~~~~~  346 (396)
T 1egd_A          267 AQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATD  346 (396)
T ss_dssp             HHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999887666678999999999999999999


Q ss_pred             HHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHHhh
Q psy13265        195 AVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAK  243 (245)
Q Consensus       195 ~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~~  243 (245)
                      +++++||.||.+++|++|+|||++...+++|++++++..|++.+|+.++
T Consensus       347 a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~~~  395 (396)
T 1egd_A          347 AVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKYK  395 (396)
T ss_dssp             HHHHHGGGTTBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCcccccCCChHHHHHHHhhCeeecCCHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999998875
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 245
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 6e-32
d1ukwa1152 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro 4e-30
d1buca1151 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C- 8e-30
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 7e-29
d2d29a1153 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm 2e-28
d1jqia1153 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C- 7e-28
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 7e-27
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 5e-26
d1siqa1154 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC 3e-25
d3mdea1154 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro 1e-24
d1rx0a1153 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase 2e-24
d1ivha1151 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, 1e-22
d1r2ja1153 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy 1e-20
d2c12a1170 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium 3e-20
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 8e-20
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 1e-19
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 2e-18
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 4e-18
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 2e-15
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 1e-14
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 1e-11
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 1e-09
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 5e-09
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 1e-06
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  113 bits (284), Expect = 6e-32
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 20/164 (12%)

Query: 101 LTPGR-KVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQAVAFMLADMAIG 152
           +   R  + A A     R +  AT+Y+  R+ FG         +  ++     L  +   
Sbjct: 9   MVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLAS 68

Query: 153 IEASRLTWMKAAAEVDL------------GRRNTLYASVAKALAADVANKCATDAVQVFG 200
             A R                                +  K+L          +  ++ G
Sbjct: 69  AYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCG 128

Query: 201 GNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEKAKN 244
           G+G+     + +L         YEG   + +L V+R +++    
Sbjct: 129 GHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQ 172
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151 Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153 Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153 Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170 Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.95
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.95
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.94
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.94
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.94
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.93
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.93
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.93
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.92
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.92
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.92
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 99.91
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 99.91
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 99.9
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.9
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.89
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 99.89
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.89
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 99.88
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 99.87
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.87
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 99.86
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.85
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.85
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.74
d1u8va1215 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal 96.8
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.7e-28  Score=180.55  Aligned_cols=135  Identities=32%  Similarity=0.452  Sum_probs=131.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy13265        107 VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQAVAFMLADMAIGIEASRLTWMKAAAEVDLGRRNTLYASVAKALAAD  186 (245)
Q Consensus       107 ~~~~~lG~~~~al~~~~~~~~~r~~~g~~~~~~~~~q~~lae~~~~l~~~~al~~~~~~~~~~~~~~~~~~~~~K~~~~~  186 (245)
                      +++.++|+++++++.+++|+++|++||+|+.++|.+|++++++..++++++.++++++...+.+.+...+.+++|.++++
T Consensus        15 iaa~~lG~a~~~l~~a~~ya~~R~~fG~pl~~~q~v~~~la~~~~~~~~~r~~~~~aa~~~d~~~~~~~~~~~aK~~a~~   94 (154)
T d1siqa1          15 IAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCG   94 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHhhh
Confidence            68899999999999999999999999999999999999999999999999999999999999988888899999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCCCChHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Q psy13265        187 VANKCATDAVQVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIEK  241 (245)
Q Consensus       187 ~~~~~~~~~~~~~G~~~~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~  241 (245)
                      .+.++++.+++++||.||.+++|++|+|||++...+++|++++++..|+|.+++.
T Consensus        95 ~a~~~~~~a~qi~Gg~G~~~~~~l~r~~Rd~r~~~i~eGt~ev~~~~iar~llG~  149 (154)
T d1siqa1          95 KALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGI  149 (154)
T ss_dssp             HHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHHHhhcCcHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999999999999999999999874
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure