Final heterodimeric neurohormone released at the end of the molting cycle, involved in the sclerotization (tanning) of the insect cuticle, melanization and wing spreading. Heterodimer specifically activates the G protein-coupled receptor rk. Drosophila melanogaster (taxid: 7227)
Final heterodimeric neurohormone released at the end of the molting cycle, involved in the sclerotization (tanning) of the insect cuticle, melanization and wing spreading.
Final heterodimeric neurohormone released at the end of the molting cycle, involved in the sclerotization (tanning) of the insect cuticle, melanization and wing spreading.
Final heterodimeric neurohormone released at the end of the molting cycle, involved in the sclerotization (tanning) of the insect cuticle, melanization and wing spreading.
Anopheles gambiae (taxid: 7165)
>sp|Q566B1|BURS_BOMMO Bursicon OS=Bombyx mori GN=burs PE=2 SV=1
Final heterodimeric neurohormone released at the end of the molting cycle, involved in the sclerotization (tanning) of the insect cuticle, melanization and wing spreading.
Bombyx mori (taxid: 7091)
>sp|P85316|BURS_AEDAE Bursicon OS=Aedes aegypti GN=burs124 PE=3 SV=1
Final heterodimeric neurohormone released at the end of the molting cycle, involved in the sclerotization (tanning) of the insect cuticle, melanization and wing spreading.
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 54 KEAEVITKAPLDCMCRPCTSIEESAVIPQEIVNYADEAPISGHFAK 99
K +V TKAPL+CMCRPCT IE++ VIPQE+ +AD+ ++ +F K
Sbjct: 119 KFKKVSTKAPLECMCRPCTGIEDANVIPQELAAFADDGTLTSYFQK 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.295 0.120 0.313
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,000,158
Number of Sequences: 539616
Number of extensions: 2310311
Number of successful extensions: 260365
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5636
Number of HSP's successfully gapped in prelim test: 594
Number of HSP's that attempted gapping in prelim test: 70286
Number of HSP's gapped (non-prelim): 82478
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 55 (25.8 bits)
Final heterodimeric neurohormone released at the end of the molting cycle, involved in the sclerotization (tanning) of the insect cuticle, melanization and wing spreading.
Culex pipiens pipiens (taxid: 38569)
Close Homologs in the Non-Redundant Database Detected by BLAST
Score = 39.0 bits (91), Expect = 6e-05
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 14 SSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
SSDDE E EEE +E E+E+ E + E +E+++ EV K + K
Sbjct: 93 SSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPK 140
The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein
Score = 38.9 bits (91), Expect = 1e-04
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 20 VEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITKAPLDCMCRPCTSIEESAV 79
V E++ EEEE+E+EEEEEEEEE EE E E + APL T S++
Sbjct: 342 VNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLLTPISEDAPLPNDDPAWTFRLSSSL 401
Query: 80 IPQEIV 85
P+ V
Sbjct: 402 SPKYAV 407
This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family
This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional
Score = 37.7 bits (88), Expect = 3e-04
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 8 SKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEVITK 61
+K +S+ E EEE +VE E E + ++E+E EE+ +E E K
Sbjct: 223 TKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDK 276
The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832
This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane domain 1
Score = 37.2 bits (87), Expect = 5e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 22 EEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKE 55
E + EEEEE E E EE E ++E +
Sbjct: 268 AEILAQRAEEEEESSEGAAETIEEPELDLETISA 301
The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this domain is one of the inner membrane domains. Length = 339
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional
The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional
Score = 36.4 bits (84), Expect = 8e-04
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 2 LPDFHSSKS--SGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
+PD H + S R+S EE +++ ++ E+E+E E E +EE ++
Sbjct: 525 IPDKHLYRLCWSLRNST----EERIDLDADDWTEDEDENEMETDEERKK 569
Human SGLT1 (hSGLT1) is a high-affinity/low-capacity glucose transporter, which can also transport galactose. In the transport mechanism, two Na+ ions first bind to the extracellular side of the transporter and induce a conformational change in the glucose binding site. This results in an increased affinity for glucose. A second conformational change in the transporter follows, bringing the Na+ and glucose binding sites to the inner surface of the membrane. Glucose is then released, followed by the Na+ ions. In the process, hSGLT1 is also able to transport water and urea and may be a major pathway for transport of these across the intestinal brush-border membrane. hSGLT1 is encoded by the SLC5A1 gene and expressed mostly in the intestine, but also in the trachea, kidney, heart, brain, testis, and prostate. The WHO/UNICEF oral rehydration solution (ORS) for the treatment of secretory diarrhea contains salt and glucose. The glucose, along with sodium ions, is transported by hSGLT1 and water is either co-transported along with these or follows by osmosis. Mutations in SGLT1 are associated with intestinal glucose galactose malabsorption (GGM). Up-regulation of intestinal SGLT1 may protect against enteric infections. SGLT1 is expressed in colorectal, head and neck, and prostate tumors. Epidermal growth factor receptor (EGFR) functions in cell survival by stabilizing SGLT1, and thereby maintaining intracellular glucose levels. SGLT1 is predicted to have 14 membrane-spanning regions. This subgroup belongs to the solute carrier 5 (SLC5)transporter family. Length = 635
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein
This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein
The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this domain is one of the inner membrane domains. Length = 339
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit
The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane. Length = 281
Score = 35.7 bits (82), Expect = 0.002
Identities = 27/46 (58%), Positives = 31/46 (67%)
Query: 3 PDFHSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEE 48
P S +S S +E EEEEE EEEE+E EEEE E+EEEEEE E
Sbjct: 432 PSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVE 477
The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715
RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221
Score = 34.9 bits (80), Expect = 0.003
Identities = 28/52 (53%), Positives = 34/52 (65%)
Query: 7 SSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAEV 58
+S+ S E EEEEE EEEEE+E EEEE E+EEEEEE E + E E+
Sbjct: 435 ASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEM 486
The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715
The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family
Score = 34.8 bits (80), Expect = 0.004
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 6 HSSKSSGRSSDDEGVEEEEEVEEEEEEEEEEEEEEEEEEEEEEEVEMVKEAE 57
H G D++ +EE ++ E+E E E+ E E E + E+ EE E +AE
Sbjct: 641 HQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAE 692
This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784
DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070
85.93
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box
CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box
CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar
The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
