Psyllid ID: psy13279

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWETRGVWKCHQWNGCGEENG
Secondary Structure (PSIPRED)
cccccccEEEEEEEEEEcccccccccHHHHHHHHcccccccccccccEEccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccEEEEEEEEEcccccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccccccccEEEEEEcccEEEcccccccccccccEEcccccccHHHHHccccccHHHHHHHHcccccccccEEEEEccccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEcccccccccccccEEEEccHEHEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEccccHHHHccHHHHHHHHccccccccccEEEEEEcccccc
Coil and Loop (DISEMBL)
mdikigkqevgRITIQLRydlvprtaENFRCLcthekgfgyqgssfhriiPDFVSFMTKRQSLKSRFSKFRfdfaaggnrtrhsfpiplpmkyirpcldcgskgtfqshSSRINKmcqggdftnhngtggksiygnkfedenfvlkhtgpgvlsmansgpntngsqFFLCTTSINKHYYYYYYYIFLTRFtqmcqggdftnhngtggksiygnkfedenfilkhtgpgvlsmansgpntngsqffLCTTKQEICVKLLDLLASLDagwetrgvwkchqwngcgeeng
Flexible Loop (DISEMBL)
mdikigkqevgritiqlrydlvprTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRfdfaaggnrtrhsfpiplpMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWETRGVWKCHQWNGCGEENG
Low Complexity Region (SEG)
MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHyyyyyyyIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWETRGVWKCHQWNGCGEENG
Disordered region (IsUnstruct)
****************************FRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQ*****INKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLS********NGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSM*******NGSQFFLCTTKQEICVKLLDLLASLDAGWETRGVWKCHQWNGC*****
Disordered Region (DISOPRED)
MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDA******V**CHQW*GCGE***
Disordered Region (DISEMBL)
MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWETRGVWKCHQWNGCGEENG
Disordered Region (DISPRO)
MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWETRGVWKCHQWNGCG*E**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWETRGVWKCHQWNGCGEENG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
P17742	164	Peptidyl-prolyl cis-trans	yes	N/A	0.379	0.664	0.450	5e-31
Q5R8S7	165	Peptidyl-prolyl cis-trans	N/A	N/A	0.379	0.660	0.450	7e-31
P62941	165	Peptidyl-prolyl cis-trans	N/A	N/A	0.379	0.660	0.450	7e-31
Q0ZQL1	165	Peptidyl-prolyl cis-trans	yes	N/A	0.379	0.660	0.450	7e-31
Q0ZQL2	165	Peptidyl-prolyl cis-trans	N/A	N/A	0.379	0.660	0.450	7e-31
Q0ZQK7	165	Peptidyl-prolyl cis-trans	yes	N/A	0.379	0.660	0.450	7e-31
P62940	165	Peptidyl-prolyl cis-trans	yes	N/A	0.379	0.660	0.450	7e-31
Q0ZQK6	165	Peptidyl-prolyl cis-trans	N/A	N/A	0.379	0.660	0.450	7e-31
Q0ZQK8	165	Peptidyl-prolyl cis-trans	N/A	N/A	0.379	0.660	0.450	7e-31
P62937	165	Peptidyl-prolyl cis-trans	yes	N/A	0.379	0.660	0.450	7e-31

>sp|P17742|PPIA_MOUSE Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2

 Score =  134 bits (338), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI    + +GR++ +L  D VP+TAENFR L T EKGFGY+GSSFHRIIP F+       
Sbjct: 9   DITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGG+SIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Mus musculus (taxid: 10090)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q5R8S7|PPIA_PONPY Peptidyl-prolyl cis-trans isomerase A OS=Pongo pygmaeus GN=PPIA PE=2 SV=4

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Pongo pygmaeus (taxid: 9600)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P62941|PPIA_PAPAN Peptidyl-prolyl cis-trans isomerase A OS=Papio anubis GN=PPIA PE=2 SV=2

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Papio anubis (taxid: 9555)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q0ZQL1|PPIA_PANTR Peptidyl-prolyl cis-trans isomerase A OS=Pan troglodytes GN=PPIA PE=3 SV=3

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Pan troglodytes (taxid: 9598)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q0ZQL2|PPIA_PANPA Peptidyl-prolyl cis-trans isomerase A OS=Pan paniscus GN=PPIA PE=3 SV=3

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Pan paniscus (taxid: 9597)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q0ZQK7|PPIA_NOMLE Peptidyl-prolyl cis-trans isomerase A OS=Nomascus leucogenys GN=PPIA PE=3 SV=3

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Nomascus leucogenys (taxid: 61853)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P62940|PPIA_MACMU Peptidyl-prolyl cis-trans isomerase A OS=Macaca mulatta GN=PPIA PE=1 SV=2

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Macaca mulatta (taxid: 9544)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q0ZQK6|PPIA_HYLSY Peptidyl-prolyl cis-trans isomerase A OS=Hylobates syndactylus GN=PPIA PE=3 SV=3

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Hylobates syndactylus (taxid: 9590)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q0ZQK8|PPIA_HYLLA Peptidyl-prolyl cis-trans isomerase A OS=Hylobates lar GN=PPIA PE=3 SV=3

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Hylobates lar (taxid: 9580)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P62937|PPIA_HUMAN Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
444721210	1748	Chromodomain-helicase-DNA-binding protei	0.466	0.076	0.669	3e-49
320166644	343	peptidyl-prolyl cis-trans isomerase E [C	0.557	0.466	0.5	7e-44
156377813	298	predicted protein [Nematostella vectensi	0.376	0.362	0.505	1e-34
390369799	446	PREDICTED: peptidyl-prolyl cis-trans iso	0.668	0.430	0.409	4e-34
427778659	188	Putative peptidylprolyl isomerase f [Rhi	0.459	0.702	0.497	3e-33
124256272	164	cyclophilin A [Argopecten irradians]	0.379	0.664	0.479	4e-33
289064181	164	peptidyl prolyl cis-trans isomerase A (I	0.379	0.664	0.485	6e-33
198427224	244	PREDICTED: similar to predicted protein,	0.390	0.459	0.471	3e-32
303277819	295	predicted protein [Micromonas pusilla CC	0.470	0.457	0.435	5e-31
347963871	164	AGAP000462-PA [Anopheles gambiae str. PE	0.379	0.664	0.456	7e-31

>gi|444721210|gb|ELW61956.1| Chromodomain-helicase-DNA-binding protein 1 [Tupaia chinensis]

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 93/139 (66%), Positives = 106/139 (76%), Gaps = 5/139 (3%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSIN 175
           +CQGGDFT HNGTGGKSIYG KF+DENF+LKHT PG+LSMAN+ P T GSQFF+CT    
Sbjct: 6   LCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTDPGILSMANAEPGTKGSQFFICTA--- 62

Query: 176 KHYYYYYYYIFLTRFTQ--MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMA 233
           K  +    +    R     +CQGGDFT HNGTGGKSIYG KF+DENFILKHT PG+LSMA
Sbjct: 63  KTEWLDGSHTVFARIIPGFLCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTDPGILSMA 122

Query: 234 NSGPNTNGSQFFLCTTKQE 252
           N+ P T GSQFF+CT K E
Sbjct: 123 NAEPGTKGSQFFICTAKTE 141

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|320166644|gb|EFW43543.1| peptidyl-prolyl cis-trans isomerase E [Capsaspora owczarzaki ATCC 30864]

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 105/210 (50%), Positives = 123/210 (58%), Gaps = 50/210 (23%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
           MDIKIG  + GRI ++LR D+ PRTAENFR LCTH KGFG++GSSFHRIIPDFV +++ +
Sbjct: 156 MDIKIGSSKAGRIVMELRSDVTPRTAENFRQLCTHSKGFGFKGSSFHRIIPDFVRYISAQ 215

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPC-------LDCGSKGTFQSHSSRI 113
           Q     FS                    LP     PC       LDC             
Sbjct: 216 Q-----FS--------------------LPFLSNPPCCSLLFFILDC------------- 237

Query: 114 NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTS 173
           ++MCQGGDFT HNGTGGKSIYG KF DENF LKHTG G LSMANSGPN+NGSQFF+C T 
Sbjct: 238 SQMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTGAGTLSMANSGPNSNGSQFFMCLTK 297

Query: 174 IN----KHYYYYYYYIFLTRFTQM-CQGGD 198
            +    KH  +      L    +M  QGG+
Sbjct: 298 TDWLDGKHVVFGQVIQGLDVLRRMEAQGGE 327

Source: Capsaspora owczarzaki ATCC 30864

Species: Capsaspora owczarzaki

Genus: Capsaspora

Class: Ichthyosporea

Superkingdom: Eukaryota

>gi|156377813|ref|XP_001630840.1| predicted protein [Nematostella vectensis] gi|156217869|gb|EDO38777.1| predicted protein [Nematostella vectensis]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 95/170 (55%), Gaps = 62/170 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI IG++  GRI ++LR D+VP TAENFRCLCTHEKGFGY+GSSFHRIIP F+       
Sbjct: 142 DITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFM------- 194

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ T+H                                      
Sbjct: 195 -------------CQGGDFTKH-------------------------------------- 203

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
               NGTGGKSIYG KFEDENFVLKHTG GVLSMANSGPNTNGSQFFL T
Sbjct: 204 ----NGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTT 249

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|390369799|ref|XP_793566.3| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Strongylocentrotus purpuratus]

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/261 (40%), Positives = 130/261 (49%), Gaps = 69/261 (26%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI I  +  GRI  +L    VP+TAENFR LCT EKG G  G                  
Sbjct: 16  DISIKGEPAGRILFELYAKDVPKTAENFRALCTGEKGMGTMGK----------------- 58

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                                       P+ Y + C+          H    N M QGGD
Sbjct: 59  ----------------------------PLHY-KGCI---------FHRVIKNFMIQGGD 80

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKH----TGPGVLSM-ANSGPNTNGSQFFLCTT---- 172
           FTN +GTGG+SIYG KF DENF+ K     TG  +  + A   P T  +   LCT     
Sbjct: 81  FTNSDGTGGESIYGEKFADENFIHKKNFQCTGRILFELYAKDVPKTAENFRALCTGEKGM 140

Query: 173 -SINK--HYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGV 229
            ++ K  HY    ++  +  F  M QGGDFTN +GTGG+SIYG KF DENFI KHT PG+
Sbjct: 141 GTMGKPLHYKGCIFHRVIKNF--MIQGGDFTNSDGTGGESIYGEKFADENFIHKHTKPGL 198

Query: 230 LSMANSGPNTNGSQFFLCTTK 250
           LSMANSG +TNGSQFF+ TT+
Sbjct: 199 LSMANSGKDTNGSQFFITTTE 219

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|427778659|gb|JAA54781.1| Putative peptidylprolyl isomerase f [Rhipicephalus pulchellus]

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 100/171 (58%), Gaps = 39/171 (22%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           D++    ++GRI ++LR D+VPRTAENFR LCT EKGFGY+GS FHRIIP F+       
Sbjct: 9   DMEADGAKLGRIVMELRPDVVPRTAENFRALCTGEKGFGYKGSVFHRIIPGFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TR                  G K  + +         QGGD
Sbjct: 62  -------------CQGGDFTRGD--------------GTGGKSIYGTKFEX-----QGGD 89

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
           FT  +GTGGKSIYG KFEDENF LKH+GPGVLSMAN+G NTNGSQFFL T 
Sbjct: 90  FTRGDGTGGKSIYGTKFEDENFTLKHSGPGVLSMANAGKNTNGSQFFLTTA 140

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|124256272|gb|ABM92916.1| cyclophilin A [Argopecten irradians]

 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 94/171 (54%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           D+  G   +GRIT++LR D+VPRTAENFR LCT EKGFGY+GS+FHR+I DF+       
Sbjct: 9   DVTAGGAAIGRITMELRADVVPRTAENFRALCTGEKGFGYKGSTFHRVITDFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KF DENF+LKHTGPGVLSMAN+GPNTNGSQFFLCT 
Sbjct: 71  ----NGTGGKSIYGEKFADENFILKHTGPGVLSMANAGPNTNGSQFFLCTV 117

Source: Argopecten irradians

Species: Argopecten irradians

Genus: Argopecten

Family: Pectinidae

Order: Pectinoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|289064181|gb|ADC80504.1| peptidyl prolyl cis-trans isomerase A (I) [Conus novaehollandiae]

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 96/171 (56%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI+IG + VGRI ++LR D+VP+TAENFR LCT EKGFG++GSSFHR+IP F+       
Sbjct: 9   DIEIGGKPVGRIVMELRADVVPKTAENFRALCTGEKGFGFKGSSFHRVIPGFM------- 61

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYGNKFEDENF LKHTG G+LSMAN+GPNTNGSQFFLCT 
Sbjct: 71  ----NGTGGKSIYGNKFEDENFKLKHTGAGILSMANAGPNTNGSQFFLCTA 117

Source: Conus novaehollandiae

Species: Conus novaehollandiae

Genus: Conus

Family: Conidae

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|198427224|ref|XP_002123128.1| PREDICTED: similar to predicted protein, partial [Ciona intestinalis]

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 95/174 (54%), Gaps = 62/174 (35%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI+IG Q  GR+ ++LR D+VP+TAENFRCLCTHEKGFGY+GS+FHRIIP F+       
Sbjct: 88  DIRIGGQYTGRLLMELRADVVPKTAENFRCLCTHEKGFGYRGSTFHRIIPQFM------- 140

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ T+H                                      
Sbjct: 141 -------------CQGGDFTQH-------------------------------------- 149

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSIN 175
               NGTGGKSIYG KF DENF LKHTGPG LSMANSGPNTNGSQFF+ T   +
Sbjct: 150 ----NGTGGKSIYGGKFADENFKLKHTGPGTLSMANSGPNTNGSQFFVTTEKTD 199

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|303277819|ref|XP_003058203.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460860|gb|EEH58154.1| predicted protein [Micromonas pusilla CCMP1545]

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 101/179 (56%), Gaps = 44/179 (24%)

Query: 2   DIKIGK----QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV--- 54
           D+++G+      +GR+ ++L+ D+ P+TAENF+ LC  ++G GY+ S FHR+IP F+   
Sbjct: 37  DLQLGRYGDATPIGRVVMELKEDVTPKTAENFKQLCLADEGAGYKKSRFHRVIPQFMCQG 96

Query: 55  SFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRIN 114
           +  T     + R S +R   +        S P P P                        
Sbjct: 97  ALFTAPSPPRPR-SAYRTALS--------SLPSPNP------------------------ 123

Query: 115 KMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTS 173
               GGDFTN NGTGGKSIYG  F DENF L H GPGVLSMAN+GPNTNGSQFFLCTT+
Sbjct: 124 ----GGDFTNDNGTGGKSIYGRTFPDENFTLPHNGPGVLSMANAGPNTNGSQFFLCTTA 178

Source: Micromonas pusilla CCMP1545

Species: Micromonas pusilla

Genus: Micromonas

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|347963871|ref|XP_310632.5| AGAP000462-PA [Anopheles gambiae str. PEST] gi|347963873|ref|XP_003437002.1| AGAP000462-PB [Anopheles gambiae str. PEST] gi|333466995|gb|EAA06299.6| AGAP000462-PA [Anopheles gambiae str. PEST] gi|333466996|gb|EGK96444.1| AGAP000462-PB [Anopheles gambiae str. PEST]

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 94/171 (54%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           D+ +  Q +GRI I+LR D+VP+T+ENFR LCT EKGFGY+GS FHR+IP+F+       
Sbjct: 9   DMTVDNQPLGRIVIELRPDVVPKTSENFRALCTGEKGFGYKGSIFHRVIPNFMC------ 62

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                                                     G FQ+H            
Sbjct: 63  ----------------------------------------QGGDFQNH------------ 70

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYGNKFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+ T 
Sbjct: 71  ----NGTGGKSIYGNKFEDENFILKHTGPGILSMANAGPNTNGSQFFITTV 117

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
UNIPROTKB|F1SV03	301	PPIE "Uncharacterized protein"	0.285	0.272	0.689	6.6e-26
UNIPROTKB|J9P7U8	343	PPIE "Uncharacterized protein"	0.421	0.352	0.537	1.9e-26
UNIPROTKB|A4FV72	301	PPIE "Peptidyl-prolyl cis-tran	0.285	0.272	0.689	6.6e-26
UNIPROTKB|G3MZS9	301	PPIE "Peptidyl-prolyl cis-tran	0.285	0.272	0.689	6.6e-26
UNIPROTKB|E2QVB5	301	PPIE "Uncharacterized protein"	0.285	0.272	0.689	6.6e-26
UNIPROTKB|E9PEQ6	250	PPIE "Peptidyl-prolyl cis-tran	0.285	0.328	0.689	6.6e-26
UNIPROTKB|E9PKY5	213	PPIE "Peptidyl-prolyl cis-tran	0.285	0.384	0.689	6.6e-26
UNIPROTKB|Q5TGA3	314	PPIE "Peptidyl-prolyl cis-tran	0.285	0.261	0.689	6.6e-26
UNIPROTKB|Q9UNP9	301	PPIE "Peptidyl-prolyl cis-tran	0.285	0.272	0.689	6.6e-26
MGI|MGI:1917118	301	Ppie "peptidylprolyl isomerase	0.285	0.272	0.689	6.6e-26

UNIPROTKB|F1SV03 PPIE "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/87 (68%), Positives = 67/87 (77%)

Query:    87 IPLPMKYIRPCLDCGSKGT-FQSHS-SRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDEN 142
             +P+  +  R CL    KG  F+  S  RI    MCQGGDFTNHNGTGGKSIYG KF+DEN
Sbjct:   165 VPMTAENFR-CLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN 223

Query:   143 FVLKHTGPGVLSMANSGPNTNGSQFFL 169
             F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct:   224 FILKHTGPGLLSMANSGPNTNGSQFFL 250

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9P7U8 PPIE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 72/134 (53%), Positives = 84/134 (62%)

Query:    87 IPLPMKYIRPCLDCGSKGT-FQSHS-SRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDEN 142
             +P+  +  R CL    KG  F+  S  RI    MCQGGDFTNHNGTGGKSIYG KF+DEN
Sbjct:   165 VPMTAENFR-CLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN 223

Query:   143 FVLKHTGPGVLSMANSGPNTNGSQFFL-C--TTSIN-KHXXXXXXXIFLTRFTQMCQGGD 198
             F+LKHTGPG+LSMANSGPNTNGSQFFL C  T  ++ KH         L    Q+  GG 
Sbjct:   224 FILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEVGGC 283

Query:   199 FT----NHNGTGGK 208
             +      H G GG+
Sbjct:   284 WVLGAWPHGGAGGR 297

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|A4FV72 PPIE "Peptidyl-prolyl cis-trans isomerase E" [Bos taurus (taxid:9913)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/87 (68%), Positives = 67/87 (77%)

Query:    87 IPLPMKYIRPCLDCGSKGT-FQSHS-SRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDEN 142
             +P+  +  R CL    KG  F+  S  RI    MCQGGDFTNHNGTGGKSIYG KF+DEN
Sbjct:   165 VPMTAENFR-CLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN 223

Query:   143 FVLKHTGPGVLSMANSGPNTNGSQFFL 169
             F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct:   224 FILKHTGPGLLSMANSGPNTNGSQFFL 250

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|G3MZS9 PPIE "Peptidyl-prolyl cis-trans isomerase E" [Bos taurus (taxid:9913)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/87 (68%), Positives = 67/87 (77%)

Query:    87 IPLPMKYIRPCLDCGSKGT-FQSHS-SRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDEN 142
             +P+  +  R CL    KG  F+  S  RI    MCQGGDFTNHNGTGGKSIYG KF+DEN
Sbjct:   165 VPMTAENFR-CLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN 223

Query:   143 FVLKHTGPGVLSMANSGPNTNGSQFFL 169
             F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct:   224 FILKHTGPGLLSMANSGPNTNGSQFFL 250

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2QVB5 PPIE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/87 (68%), Positives = 67/87 (77%)

Query:    87 IPLPMKYIRPCLDCGSKGT-FQSHS-SRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDEN 142
             +P+  +  R CL    KG  F+  S  RI    MCQGGDFTNHNGTGGKSIYG KF+DEN
Sbjct:   165 VPMTAENFR-CLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN 223

Query:   143 FVLKHTGPGVLSMANSGPNTNGSQFFL 169
             F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct:   224 FILKHTGPGLLSMANSGPNTNGSQFFL 250

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E9PEQ6 PPIE "Peptidyl-prolyl cis-trans isomerase" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/87 (68%), Positives = 67/87 (77%)

Query:    87 IPLPMKYIRPCLDCGSKGT-FQSHS-SRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDEN 142
             +P+  +  R CL    KG  F+  S  RI    MCQGGDFTNHNGTGGKSIYG KF+DEN
Sbjct:   114 VPMTAENFR-CLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN 172

Query:   143 FVLKHTGPGVLSMANSGPNTNGSQFFL 169
             F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct:   173 FILKHTGPGLLSMANSGPNTNGSQFFL 199

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|E9PKY5 PPIE "Peptidyl-prolyl cis-trans isomerase" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/87 (68%), Positives = 67/87 (77%)

Query:    87 IPLPMKYIRPCLDCGSKGT-FQSHS-SRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDEN 142
             +P+  +  R CL    KG  F+  S  RI    MCQGGDFTNHNGTGGKSIYG KF+DEN
Sbjct:    99 VPMTAENFR-CLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN 157

Query:   143 FVLKHTGPGVLSMANSGPNTNGSQFFL 169
             F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct:   158 FILKHTGPGLLSMANSGPNTNGSQFFL 184

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|Q5TGA3 PPIE "Peptidyl-prolyl cis-trans isomerase E" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/87 (68%), Positives = 67/87 (77%)

Query:    87 IPLPMKYIRPCLDCGSKGT-FQSHS-SRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDEN 142
             +P+  +  R CL    KG  F+  S  RI    MCQGGDFTNHNGTGGKSIYG KF+DEN
Sbjct:   165 VPMTAENFR-CLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN 223

Query:   143 FVLKHTGPGVLSMANSGPNTNGSQFFL 169
             F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct:   224 FILKHTGPGLLSMANSGPNTNGSQFFL 250

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q9UNP9 PPIE "Peptidyl-prolyl cis-trans isomerase E" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/87 (68%), Positives = 67/87 (77%)

Query:    87 IPLPMKYIRPCLDCGSKGT-FQSHS-SRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDEN 142
             +P+  +  R CL    KG  F+  S  RI    MCQGGDFTNHNGTGGKSIYG KF+DEN
Sbjct:   165 VPMTAENFR-CLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN 223

Query:   143 FVLKHTGPGVLSMANSGPNTNGSQFFL 169
             F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct:   224 FILKHTGPGLLSMANSGPNTNGSQFFL 250

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0045070 "positive regulation of viral genome replication" evidence=IMP

GO:0016018 "cyclosporin A binding" evidence=TAS

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=TAS

MGI|MGI:1917118 Ppie "peptidylprolyl isomerase E (cyclophilin E)" [Mus musculus (taxid:10090)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/87 (68%), Positives = 67/87 (77%)

Query:    87 IPLPMKYIRPCLDCGSKGT-FQSHS-SRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDEN 142
             +P+  +  R CL    KG  F+  S  RI    MCQGGDFTNHNGTGGKSIYG KF+DEN
Sbjct:   165 VPMTAENFR-CLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN 223

Query:   143 FVLKHTGPGVLSMANSGPNTNGSQFFL 169
             F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct:   224 FILKHTGPGLLSMANSGPNTNGSQFFL 250

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.766
4th Layer	5.2.1.8	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	287
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	4e-50
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	2e-39
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	3e-31
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	4e-31
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	3e-29
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	1e-26
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	6e-20
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	7e-20
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	2e-19
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	3e-19
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	5e-19
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	1e-18
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	2e-18
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	8e-18
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	1e-17
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	3e-17
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	8e-17
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	2e-16
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	3e-14
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	5e-14
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	3e-12
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	1e-11
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	1e-11
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	2e-11
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	3e-11
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	4e-06
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	4e-06
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	3e-05
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	3e-05
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	4e-05
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	5e-05
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	6e-05
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	2e-04

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  162 bits (413), Expect = 4e-50
 Identities = 77/177 (43%), Positives = 91/177 (51%), Gaps = 67/177 (37%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-----FGYQGSSFHRIIPDFVS 55
            DI IG +  GRI ++L  D+VP+TAENFR LCT EKG     FGY+GS+FHR+IPDF+ 
Sbjct: 5   FDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFM- 63

Query: 56  FMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINK 115
                                GG+ TR +                   GT          
Sbjct: 64  -------------------IQGGDFTRGN-------------------GT---------- 75

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                        GGKSIYG KF DENF LKHTGPG+LSMAN+GPNTNGSQFF+ T 
Sbjct: 76  -------------GGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTV 119

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  135 bits (342), Expect = 2e-39
 Identities = 47/58 (81%), Positives = 50/58 (86%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGDFT  NGTGGKSIYG KF DENF LKHTGPG+LSMAN+GPNTNGSQFF+ T K
Sbjct: 63  MIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVK 120

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  114 bits (287), Expect = 3e-31
 Identities = 49/74 (66%), Positives = 57/74 (77%), Gaps = 2/74 (2%)

Query: 175 NKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 234
           N HY    ++  + +F  MCQGGD TNHNGTGG+SIYG KF DENF LKH  PG+LSMAN
Sbjct: 63  NLHYKGSIFHRIIPQF--MCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMAN 120

Query: 235 SGPNTNGSQFFLCT 248
           +GPNTNGSQFF+ T
Sbjct: 121 AGPNTNGSQFFITT 134

Length = 183

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  114 bits (286), Expect = 4e-31
 Identities = 45/56 (80%), Positives = 49/56 (87%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
           MCQGGD TNHNGTGG+SIYG KF DENF LKH  PG+LSMAN+GPNTNGSQFF+ T
Sbjct: 79  MCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITT 134

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  109 bits (274), Expect = 3e-29
 Identities = 70/180 (38%), Positives = 82/180 (45%), Gaps = 61/180 (33%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           D+ IG    GRI ++L  D+ P+TAENF                              RQ
Sbjct: 24  DVTIGGIPAGRIKMELFADIAPKTAENF------------------------------RQ 53

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                       F  G  R +   P              G KG  Q H    + M QGGD
Sbjct: 54  ------------FCTGEFR-KAGLPQ-------------GYKGC-QFHRVIKDFMIQGGD 86

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL----CTTSINKH 177
           F   +GTG  SIYG+KFEDENF+ KHTGPG+LSMANSGPNTNG QFF+    C    NKH
Sbjct: 87  FLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKH 146

Length = 186

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  102 bits (255), Expect = 1e-26
 Identities = 43/60 (71%), Positives = 48/60 (80%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGDF   +GTG  SIYG+KFEDENFI KHTGPG+LSMANSGPNTNG QFF+   K +
Sbjct: 81  MIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCD 140

Length = 186

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score = 83.7 bits (207), Expect = 6e-20
 Identities = 39/55 (70%), Positives = 43/55 (78%), Gaps = 2/55 (3%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFL 169
           M QGGD T   G GG SIYG KFEDE +  LKHTG G+LSMAN+GPNTNGSQFF+
Sbjct: 47  MIQGGDPTG-TGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFI 100

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score = 83.4 bits (206), Expect = 7e-20
 Identities = 39/55 (70%), Positives = 43/55 (78%), Gaps = 2/55 (3%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 246
           M QGGD T   G GG SIYG KFEDE +  LKHTG G+LSMAN+GPNTNGSQFF+
Sbjct: 47  MIQGGDPTG-TGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFI 100

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score = 81.9 bits (203), Expect = 2e-19
 Identities = 36/59 (61%), Positives = 38/59 (64%), Gaps = 3/59 (5%)

Query: 114 NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLK-HTGPGVLSMANSGPNTNGSQFFLCT 171
             M QGGD T   G  G S  G KF DENF LK H   G LSMAN+GPNTNGSQFF+ T
Sbjct: 45  GFMIQGGDPTGTGG--GGSGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITT 101

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score = 81.9 bits (203), Expect = 3e-19
 Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 114 NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKH--TGPGVLSMANSG-PNTNGSQFFLC 170
             M QGGD T  +GTGG       F+DENF L       G LSMA +G PN+NGSQFF+ 
Sbjct: 47  GFMIQGGDPTGGDGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFIT 103

Query: 171 TT 172
             
Sbjct: 104 VV 105

Length = 158

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score = 81.2 bits (201), Expect = 5e-19
 Identities = 36/61 (59%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILK-HTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           M QGGD T   G  G S  G KF DENF LK H   G LSMAN+GPNTNGSQFF+ T   
Sbjct: 47  MIQGGDPTGTGG--GGSGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPT 104

Query: 252 E 252
            
Sbjct: 105 P 105

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 42/74 (56%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQF 167
           H S  N M QGGD T   G GG+SI+G  F+DE    L H G GVLSMANSGPNTNGSQF
Sbjct: 42  HRSIRNFMIQGGDPTG-TGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQF 100

Query: 168 FL----CTTSINKH 177
           F+    C     KH
Sbjct: 101 FITYRSCKHLDGKH 114

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score = 80.0 bits (198), Expect = 2e-18
 Identities = 30/63 (47%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKH--TGPGVLSMANSG-PNTNGSQFFLCTT 249
           M QGGD T  +GTGG       F+DENF L       G LSMA +G PN+NGSQFF+   
Sbjct: 49  MIQGGDPTGGDGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVV 105

Query: 250 KQE 252
              
Sbjct: 106 DNP 108

Length = 158

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score = 77.9 bits (192), Expect = 8e-18
 Identities = 39/67 (58%), Positives = 47/67 (70%), Gaps = 6/67 (8%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           M Q GD T  +GTGG+SI+G +FEDE +  LKH  P  LSMAN+GPNTNGSQFF+ T + 
Sbjct: 47  MIQTGDPTG-DGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVAT 105

Query: 175 ----NKH 177
               NKH
Sbjct: 106 PWLDNKH 112

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 36/55 (65%), Positives = 40/55 (72%), Gaps = 2/55 (3%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 246
           M QGGD T   G GG+SI+G  F+DE    L H G GVLSMANSGPNTNGSQFF+
Sbjct: 49  MIQGGDPTG-TGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFI 102

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score = 76.7 bits (189), Expect = 3e-17
 Identities = 41/73 (56%), Positives = 49/73 (67%), Gaps = 7/73 (9%)

Query: 180 YYYYYIF---LTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANS 235
           YY   IF   +  F  M Q GD T  +GTGG+SI+G +FEDE +  LKH  P  LSMAN+
Sbjct: 33  YYNNTIFHRVIKGF--MIQTGDPTG-DGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANA 89

Query: 236 GPNTNGSQFFLCT 248
           GPNTNGSQFF+ T
Sbjct: 90  GPNTNGSQFFITT 102

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score = 75.6 bits (186), Expect = 8e-17
 Identities = 37/60 (61%), Positives = 42/60 (70%), Gaps = 2/60 (3%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           M Q GD T   G GG+SI+G KFEDE    LKH   GV+SMAN+GPNTNGSQFF+   KQ
Sbjct: 50  MVQTGDPTG-TGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQ 108

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score = 74.4 bits (183), Expect = 2e-16
 Identities = 35/55 (63%), Positives = 40/55 (72%), Gaps = 2/55 (3%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFL 169
           M Q GD T   G GG+SI+G KFEDE    LKH   GV+SMAN+GPNTNGSQFF+
Sbjct: 50  MVQTGDPTG-TGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFI 103

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 114 NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTS 173
             M QGGD T     G +SI      DE         G LSMA SGPN+ GSQFF+    
Sbjct: 47  GFMIQGGDPTGPGTGGKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGD 101

Query: 174 IN 175
             
Sbjct: 102 AP 103

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score = 67.7 bits (166), Expect = 5e-14
 Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGD T     G +SI      DE         G LSMA SGPN+ GSQFF+      
Sbjct: 49  MIQGGDPTGPGTGGKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDAP 103

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 6/54 (11%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          +DI       GRI I+L  D  P+T ENF  LC  +KGF Y G+ FHR+IP F+
Sbjct: 2  LDITTNL---GRIVIELFGDEAPKTVENFLSLC--KKGF-YDGTIFHRVIPGFM 49

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 2/53 (3%)

Query: 118 QGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFL 169
           QGGD T   GTGG+SIYG  F+DE +  L+    G++ MAN+G ++NGSQFF 
Sbjct: 57  QGGDPTG-TGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFF 108

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 2/53 (3%)

Query: 195 QGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 246
           QGGD T   GTGG+SIYG  F+DE +  L+    G++ MAN+G ++NGSQFF 
Sbjct: 57  QGGDPTG-TGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFF 108

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
           GRI I+L  D  P+T ENF  L     GF Y G++FHR+IP F+
Sbjct: 6  KGRIVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGFM 47

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 5  IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          I +   G ITI+L  D  P+T  NF  L     GF Y G+ FHR+IP F+
Sbjct: 3  ILETNKGDITIELYPDKAPKTVANFLQLVKE--GF-YDGTIFHRVIPGFM 49

Length = 158

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 179 YYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNK-------FEDE-NFILKHTGPGVL 230
           YY +   +  +   + Q GD T   G GG+SIY          FE E   +LKH+  G +
Sbjct: 33  YYNFCLFYNVQKDFIAQTGDPTG-TGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTV 91

Query: 231 SMANSGPNTNGSQFFLCTT 249
           SM N+G N NGSQF++   
Sbjct: 92  SMVNAGDNLNGSQFYITLG 110

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 9/64 (14%)

Query: 117 CQGGDFTNHNGTGGKSIYGNK-------FEDE-NFVLKHTGPGVLSMANSGPNTNGSQFF 168
            Q GD T   G GG+SIY          FE E   +LKH+  G +SM N+G N NGSQF+
Sbjct: 48  AQTGDPTG-TGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFY 106

Query: 169 LCTT 172
           +   
Sbjct: 107 ITLG 110

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          +G I I+L  D  P+  ENF  LC    G+ Y G  FHR I  F+
Sbjct: 9  LGDIKIELFCDDCPKACENFLALCA--SGY-YNGCIFHRNIKGFM 50

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G I ++L  D  P T ENF       KGF Y  + FHR+I  FV
Sbjct: 7  GDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFV 47

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          +G IT++L ++  P+T +NF  L    +G+ Y G+ FHR+I DF+
Sbjct: 6  MGEITLELYWNHAPKTCKNFYELAK--RGY-YNGTIFHRLIKDFM 47

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG--------FGYQGSSFHRI 49
           +DI IG    GR+  +L  D+VP T ENFR L T   G          Y  +  H +
Sbjct: 57  LDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHV 113

Length = 249

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          G I I+L  +  P+T ENF    TH +   Y  + FHR+I  F
Sbjct: 7  GDIHIRLFPEEAPKTVENF---TTHARNGYYNNTIFHRVIKGF 46

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G + ++L  D  P+  ENF  LC  +KG+ Y G+ FHR I +F+
Sbjct: 9  GDLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFM 49

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
KOG0546|consensus	372		100.0
KOG0880|consensus	217		100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
KOG0879|consensus	177		100.0
KOG0111|consensus	298		100.0
KOG0881|consensus	164		100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
KOG0882|consensus	558		100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
KOG0883|consensus	518		100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
KOG0884|consensus	161		100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	99.98
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	99.97
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	99.97
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	99.97
KOG0865|consensus	167		99.97
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	99.96
KOG0885|consensus	439		99.96
KOG0415|consensus	479		99.95
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	99.95
KOG0546|consensus	372		99.69
KOG0111|consensus	298		99.68
KOG0880|consensus	217		99.67
KOG0881|consensus	164		99.59
KOG0879|consensus	177		99.55
KOG0883|consensus	518		99.47
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	99.46
KOG0865|consensus	167		99.44
KOG0882|consensus	558		99.4
KOG0884|consensus	161		99.38
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	99.37
PTZ00060	183	cyclophilin; Provisional	99.34
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	99.32
KOG0885|consensus	439		99.12
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	99.11
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	99.08
PTZ00221	249	cyclophilin; Provisional	99.07
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	99.03
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	99.02
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	99.02
KOG0415|consensus	479		99.01
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	98.95
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	98.92
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	98.75
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	98.69
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	98.58
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	98.57
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	98.26
PRK00969	508	hypothetical protein; Provisional	94.69
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	92.98

>KOG0546|consensus

Probab=100.00  E-value=7.9e-46  Score=343.54  Aligned_cols=144  Identities=53%  Similarity=0.851  Sum_probs=134.4

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCc--------eecCceeEEeccCcccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF--------GYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRF   72 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~--------~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~   72 (287)
                      |||+|++.+.|||+||||.|.+|+||+||++||+|+.|.        +|+|+.|||||++|                   
T Consensus        13 fDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~F-------------------   73 (372)
T KOG0546|consen   13 FDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNF-------------------   73 (372)
T ss_pred             EEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecc-------------------
Confidence            799999999999999999999999999999999999984        59999999999999                   


Q ss_pred             ccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCc
Q psy13279         73 DFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGV  152 (287)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~  152 (287)
                                                                 ||||||++.                            
T Consensus        74 -------------------------------------------MiQgGDfs~----------------------------   82 (372)
T KOG0546|consen   74 -------------------------------------------MIQGGDFSE----------------------------   82 (372)
T ss_pred             -------------------------------------------eeecccccc----------------------------
Confidence                                                       888888765                            


Q ss_pred             eeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhh
Q psy13279        153 LSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSM  232 (287)
Q Consensus       153 l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsM  232 (287)
                                                                       ++|+||+||||..|+||++.++|+++++|||
T Consensus        83 -------------------------------------------------gnGtGGeSIYG~~FdDEnF~lKHdrpflLSM  113 (372)
T KOG0546|consen   83 -------------------------------------------------GNGTGGESIYGEKFDDENFELKHDRPFLLSM  113 (372)
T ss_pred             -------------------------------------------------CCCCCcccccccccccccceeccCcchhhhh
Confidence                                                             2567788888888999999999999999999


Q ss_pred             hhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        233 ANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       233 A~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      ||.||||||||||||+.++|||||+|.|||+||.|++|             +|+.+| .|+.|||
T Consensus       114 AN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV-~I~dCGe  177 (372)
T KOG0546|consen  114 ANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADV-VISDCGE  177 (372)
T ss_pred             hcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccce-Eeccccc
Confidence            99999999999999999999999999999999999984             699999 9999997

>KOG0880|consensus

Probab=100.00  E-value=3.4e-44  Score=308.06  Aligned_cols=144  Identities=55%  Similarity=0.902  Sum_probs=134.0

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHc-cCCCceecCceeEEeccCccccccccccccccccccccccccCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCT-HEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGN   79 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~-~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   79 (287)
                      |||.+++.+.|||+|+||++.+|+||+||++||+ +.+++||.++.||||||+|                          
T Consensus        44 fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nf--------------------------   97 (217)
T KOG0880|consen   44 FDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNF--------------------------   97 (217)
T ss_pred             EEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCc--------------------------
Confidence            6999999999999999999999999999999999 8899999999999999999                          


Q ss_pred             CccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccC
Q psy13279         80 RTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSG  159 (287)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~  159 (287)
                                                          ||||||++.                                   
T Consensus        98 ------------------------------------mIQGGd~t~-----------------------------------  106 (217)
T KOG0880|consen   98 ------------------------------------MIQGGDFTK-----------------------------------  106 (217)
T ss_pred             ------------------------------------eeecCcccc-----------------------------------
Confidence                                                888888765                                   


Q ss_pred             CCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCC
Q psy13279        160 PNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNT  239 (287)
Q Consensus       160 ~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s  239 (287)
                                                                ++|+|+.||||..|+|||++++|+++|+|||||++|++
T Consensus       107 ------------------------------------------g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDt  144 (217)
T KOG0880|consen  107 ------------------------------------------GDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDT  144 (217)
T ss_pred             ------------------------------------------CCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCC
Confidence                                                      25667777888889999999999999999999999999


Q ss_pred             CCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        240 NGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       240 ~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      ||||||||+.+++||||+|+|||+|++|||+             +|++.+ +|++|||
T Consensus       145 NGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v-~I~~~g~  201 (217)
T KOG0880|consen  145 NGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDV-VIANCGE  201 (217)
T ss_pred             CCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccE-EEeecCc
Confidence            9999999999999999999999999999994             888999 9999996

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-39  Score=274.10  Aligned_cols=122  Identities=44%  Similarity=0.734  Sum_probs=107.0

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      .+++|+.|+|+||||++.||+||+||++||  +.+| |+|+.|||||++|                              
T Consensus         2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~F------------------------------   48 (158)
T COG0652           2 VILETNKGDITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGF------------------------------   48 (158)
T ss_pred             ceeeccCCCEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCc------------------------------
Confidence            578999999999999999999999999999  8999 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      ||||||+...+++++.                                
T Consensus        49 --------------------------------miQgGd~~~~~g~gg~--------------------------------   64 (158)
T COG0652          49 --------------------------------MIQGGDPTGGDGTGGP--------------------------------   64 (158)
T ss_pred             --------------------------------eeecCCCCCCCCCCCC--------------------------------
Confidence                                            9999998764344433                                


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCc--hhhhhhhhcC-CCCC
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTG--PGVLSMANSG-PNTN  240 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~--~G~lsMA~~~-p~s~  240 (287)
                                                                      +++|++|+....|++  +|+|||||++ ||||
T Consensus        65 ------------------------------------------------~~~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~   96 (158)
T COG0652          65 ------------------------------------------------GPPFKDENFALNGDRHKRGTLSMARAGDPNSN   96 (158)
T ss_pred             ------------------------------------------------CCCCcccccccccccCCcceEeEcccCCcCCc
Confidence                                                            234555555444544  9999999999 9999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      +||||||+.++||||++|||||+|++|||+
T Consensus        97 ~SQFFI~~~~~~~Ld~~ytVFG~Vv~Gmdv  126 (158)
T COG0652          97 GSQFFITVVDNPFLDGKYTVFGQVVEGMDV  126 (158)
T ss_pred             cCeEEEEecCCcccCCCCcEEEEEehhHHH
Confidence            999999999999999999999999999997

>KOG0879|consensus

Probab=100.00  E-value=4e-39  Score=261.99  Aligned_cols=144  Identities=50%  Similarity=0.822  Sum_probs=127.6

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCC-----CceecCceeEEeccCccccccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK-----GFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFA   75 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~-----g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~   75 (287)
                      |||+|++++.|||.||||.|.+|+|++||+..|+|+-     -.||+++.|||||++|                      
T Consensus        15 ~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdF----------------------   72 (177)
T KOG0879|consen   15 FDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDF----------------------   72 (177)
T ss_pred             EEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhh----------------------
Confidence            6999999999999999999999999999999999873     3679999999999999                      


Q ss_pred             cCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceec
Q psy13279         76 AGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSM  155 (287)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~m  155 (287)
                                                              ||||||+.+.                              
T Consensus        73 ----------------------------------------MiQgGDFv~g------------------------------   82 (177)
T KOG0879|consen   73 ----------------------------------------MIQGGDFVNG------------------------------   82 (177)
T ss_pred             ----------------------------------------eeccCceecC------------------------------
Confidence                                                    8888887653                              


Q ss_pred             cccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhc
Q psy13279        156 ANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS  235 (287)
Q Consensus       156 a~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~  235 (287)
                                                                     +|+|..|||+.+|.||++.++|+.+|+|||||+
T Consensus        83 -----------------------------------------------DGtG~~sIy~~~F~DENFtlkH~~PGlLSMANs  115 (177)
T KOG0879|consen   83 -----------------------------------------------DGTGVASIYGSTFPDENFTLKHDGPGLLSMANS  115 (177)
T ss_pred             -----------------------------------------------CCceEEEEcCCCCCCcceeeecCCCceeecccc
Confidence                                                           455556777888889999999999999999999


Q ss_pred             CCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        236 GPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       236 ~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      ++++|++|||||..+++|||++|.|||||++||.+             +|-.++ .|..|||
T Consensus       116 G~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v-~i~qCGe  176 (177)
T KOG0879|consen  116 GKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPV-VIVQCGE  176 (177)
T ss_pred             CCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcE-EEeeccc
Confidence            99999999999999999999999999999999984             444556 6677776

>KOG0111|consensus

Probab=100.00  E-value=3.5e-39  Score=281.47  Aligned_cols=144  Identities=64%  Similarity=1.049  Sum_probs=128.8

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||+|.+...|||+++|..|..|.|++||++||+|++||||+|+.||||||.|                           
T Consensus       141 ~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~f---------------------------  193 (298)
T KOG0111|consen  141 HDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKF---------------------------  193 (298)
T ss_pred             hheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhh---------------------------
Confidence            68999999999999999999999999999999999999999999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         |+||||+++++|+                                
T Consensus       194 -----------------------------------mcqggdftn~ngt--------------------------------  206 (298)
T KOG0111|consen  194 -----------------------------------MCQGGDFTNGNGT--------------------------------  206 (298)
T ss_pred             -----------------------------------hccCCccccCCCC--------------------------------
Confidence                                               8888887775444                                


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                   ||.||||..|+||++.++|.-+|+|||||+++|+|
T Consensus       207 ---------------------------------------------ggksiygkkfddenf~lkht~pgtlsmansgantn  241 (298)
T KOG0111|consen  207 ---------------------------------------------GGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTN  241 (298)
T ss_pred             ---------------------------------------------CCcccccccccccceeeecCCCceeeccccCCCCC
Confidence                                                         45556666677777777777899999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      +||||||+.+++|||++|.|||.|++||+|            .|-+++ .|..|||
T Consensus       242 gsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qkv-~i~~cge  296 (298)
T KOG0111|consen  242 GSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKV-KIVECGE  296 (298)
T ss_pred             CceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceEE-EEEeccc
Confidence            999999999999999999999999999995            566777 8888887

>KOG0881|consensus

Probab=100.00  E-value=1.2e-38  Score=256.37  Aligned_cols=124  Identities=49%  Similarity=0.811  Sum_probs=113.5

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      ...+|+.|.|++|||-+.||+||+||.+|+  ++|| |+|+.|||||++|                              
T Consensus        12 V~LeTsmG~i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DF------------------------------   58 (164)
T KOG0881|consen   12 VTLETSMGKITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDF------------------------------   58 (164)
T ss_pred             EEEeecccceehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhh------------------------------
Confidence            356899999999999999999999999999  9999 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      ||||||++.                                       
T Consensus        59 --------------------------------miQGGDPTG---------------------------------------   67 (164)
T KOG0881|consen   59 --------------------------------MIQGGDPTG---------------------------------------   67 (164)
T ss_pred             --------------------------------eeecCCCCC---------------------------------------
Confidence                                            777776543                                       


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchhhhhhhhcCCCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G~lsMA~~~p~s~~S  242 (287)
                                                             +|.||.||||..|+|| ...++|...|+|||||++||+|+|
T Consensus        68 ---------------------------------------TGRGGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgS  108 (164)
T KOG0881|consen   68 ---------------------------------------TGRGGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGS  108 (164)
T ss_pred             ---------------------------------------CCCCccccccchhhhhhhhhhcccchhhhhhhccCCCCCCc
Confidence                                                   6667788888888888 458899999999999999999999


Q ss_pred             eEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        243 QFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       243 QFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      |||||+.+++|||++||+||||..||+|
T Consensus       109 QFFiTLAPt~~LDGKHTIFGRV~~Gm~v  136 (164)
T KOG0881|consen  109 QFFITLAPTQWLDGKHTIFGRVCSGMEV  136 (164)
T ss_pred             eEEEEecCccccCCcceeehhhhhhHHH
Confidence            9999999999999999999999999995

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=1.3e-36  Score=260.45  Aligned_cols=142  Identities=59%  Similarity=0.954  Sum_probs=121.0

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCC------ceecCceeEEeccCcccccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG------FGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDF   74 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g------~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~   74 (287)
                      |||.|.+++.|+|+||||.+.||+||+||++||++.++      + |+++.||||+|+|                     
T Consensus         5 ~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~-Y~~~~f~Rv~~~~---------------------   62 (164)
T cd01926           5 FDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFG-YKGSTFHRVIPDF---------------------   62 (164)
T ss_pred             EEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccc-cCCCEEEEEeCCc---------------------
Confidence            79999999999999999999999999999999976566      6 9999999999999                     


Q ss_pred             ccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCcee
Q psy13279         75 AAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLS  154 (287)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~  154 (287)
                                                               ++|+||+...++++                         
T Consensus        63 -----------------------------------------~iq~Gd~~~~~g~~-------------------------   76 (164)
T cd01926          63 -----------------------------------------MIQGGDFTRGNGTG-------------------------   76 (164)
T ss_pred             -----------------------------------------EEEcCCccCCCCCC-------------------------
Confidence                                                     89999865422222                         


Q ss_pred             ccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhh
Q psy13279        155 MANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN  234 (287)
Q Consensus       155 ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~  234 (287)
                                                                          +.++|+..+++|...++|+++|+||||+
T Consensus        77 ----------------------------------------------------~~~~~g~~~~~e~~~~~h~~~G~lsma~  104 (164)
T cd01926          77 ----------------------------------------------------GKSIYGEKFPDENFKLKHTGPGLLSMAN  104 (164)
T ss_pred             ----------------------------------------------------CCcccCCccCCCCccccCCCccEEEeeE
Confidence                                                                2344555566777778888999999999


Q ss_pred             cCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCC
Q psy13279        235 SGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCG  283 (287)
Q Consensus       235 ~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~g  283 (287)
                      .+|++++||||||+++.|+||++|||||||++||||            +|+.+| .|..||
T Consensus       105 ~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i-~I~~cG  164 (164)
T cd01926         105 AGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKV-VIADCG  164 (164)
T ss_pred             CCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCe-EEEECC
Confidence            999999999999999999999999999999999994            555666 566665

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=4.7e-36  Score=261.25  Aligned_cols=143  Identities=54%  Similarity=0.862  Sum_probs=122.2

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHcc-------CCCceecCceeEEeccCccccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTH-------EKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFD   73 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~-------~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~   73 (287)
                      |||+|.+++.|+|+||||.+.||+||+||++||+|       +.++ |+++.||||+|+|                    
T Consensus        20 ~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~--------------------   78 (183)
T PTZ00060         20 FDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQF--------------------   78 (183)
T ss_pred             EEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCC--------------------
Confidence            69999999999999999999999999999999974       3568 9999999999999                    


Q ss_pred             cccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCce
Q psy13279         74 FAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVL  153 (287)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l  153 (287)
                                                                +||+||+...++++                        
T Consensus        79 ------------------------------------------~iqgGd~~~~~g~~------------------------   92 (183)
T PTZ00060         79 ------------------------------------------MCQGGDITNHNGTG------------------------   92 (183)
T ss_pred             ------------------------------------------eEEeCCccCCCCCC------------------------
Confidence                                                      89999875422222                        


Q ss_pred             eccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhh
Q psy13279        154 SMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMA  233 (287)
Q Consensus       154 ~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA  233 (287)
                                                                           +.++|+.++++|...++|+++|+||||
T Consensus        93 -----------------------------------------------------g~~~~g~~~~~e~~~~~h~~~G~lsma  119 (183)
T PTZ00060         93 -----------------------------------------------------GESIYGRKFTDENFKLKHDQPGLLSMA  119 (183)
T ss_pred             -----------------------------------------------------CCcccccccCCccccccCCCCCEEEec
Confidence                                                                 233445556677677788889999999


Q ss_pred             hcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        234 NSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       234 ~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      +.++++++||||||+++.|+||++|||||||++||||            +|..+| .|..||+
T Consensus       120 ~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v-~I~~cg~  181 (183)
T PTZ00060        120 NAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPV-VVTDCGE  181 (183)
T ss_pred             cCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCe-EEEEeEE
Confidence            9999999999999999999999999999999999994            466677 7777775

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=7e-36  Score=260.77  Aligned_cols=144  Identities=53%  Similarity=0.883  Sum_probs=122.4

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCC---C--ceecCceeEEeccCccccccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK---G--FGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFA   75 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~---g--~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~   75 (287)
                      |||.+.+++.|+|+||||.+.||+||+||++||+++.   +  .+|+++.||||+|+|                      
T Consensus        23 ~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f----------------------   80 (186)
T PLN03149         23 FDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDF----------------------   80 (186)
T ss_pred             EEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCc----------------------
Confidence            6899999999999999999999999999999997643   2  249999999999999                      


Q ss_pred             cCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceec
Q psy13279         76 AGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSM  155 (287)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~m  155 (287)
                                                              +||+||+...+++|                          
T Consensus        81 ----------------------------------------~iqgGd~~~~~g~g--------------------------   94 (186)
T PLN03149         81 ----------------------------------------MIQGGDFLKGDGTG--------------------------   94 (186)
T ss_pred             ----------------------------------------EEEcCCcccCCCCC--------------------------
Confidence                                                    89999875433333                          


Q ss_pred             cccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhc
Q psy13279        156 ANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS  235 (287)
Q Consensus       156 a~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~  235 (287)
                                                                         +.++|+..|++|+..++|+++|+||||+.
T Consensus        95 ---------------------------------------------------~~~~~g~~f~~e~~~~~h~~~G~lsma~~  123 (186)
T PLN03149         95 ---------------------------------------------------CVSIYGSKFEDENFIAKHTGPGLLSMANS  123 (186)
T ss_pred             ---------------------------------------------------cccccCCccCCcccccccCCCCEEEEeeC
Confidence                                                               33344555666766778889999999999


Q ss_pred             CCCCCCceEEEEcCCCCCCCCCccEEEEee-ecccc-------------ccceeeeeeecCCC
Q psy13279        236 GPNTNGSQFFLCTTKQEICVKLLDLLASLD-AGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       236 ~p~s~~SQFFIt~g~~~~LD~~ytVfG~Vi-eG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      ++++++||||||+.+.|+||++|||||+|+ +||||             +|..+| +|..||+
T Consensus       124 g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i-~I~~cG~  185 (186)
T PLN03149        124 GPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLAC-VISECGE  185 (186)
T ss_pred             CCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCe-EEEeCEe
Confidence            999999999999999999999999999999 79994             677888 8888886

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=5e-36  Score=252.78  Aligned_cols=123  Identities=44%  Similarity=0.676  Sum_probs=106.9

Q ss_pred             ECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCC
Q psy13279          5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHS   84 (287)
Q Consensus         5 i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (287)
                      |..|++|+|+||||.+.||+||+||++||  +.+| |+++.||||+|+|                               
T Consensus         1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f-------------------------------   46 (148)
T cd01927           1 IIHTTKGDIHIRLFPEEAPKTVENFTTHA--RNGY-YNNTIFHRVIKGF-------------------------------   46 (148)
T ss_pred             CeEeccccEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCcEEEEEcCCc-------------------------------
Confidence            46799999999999999999999999999  8999 9999999999999                               


Q ss_pred             CCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCC
Q psy13279         85 FPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNG  164 (287)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~  164 (287)
                                                     ++|+||+.. ++++                                   
T Consensus        47 -------------------------------~iq~Gd~~~-~g~g-----------------------------------   59 (148)
T cd01927          47 -------------------------------MIQTGDPTG-DGTG-----------------------------------   59 (148)
T ss_pred             -------------------------------EEEecccCC-CCCC-----------------------------------
Confidence                                           899998653 2222                                   


Q ss_pred             CceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcCCCCCCce
Q psy13279        165 SQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQ  243 (287)
Q Consensus       165 SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~p~s~~SQ  243 (287)
                                                                +.++|+.++++|.. .++|+++|+||||+.+|++++||
T Consensus        60 ------------------------------------------~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~Sq   97 (148)
T cd01927          60 ------------------------------------------GESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQ   97 (148)
T ss_pred             ------------------------------------------CCcccCCccccccccccCcCCCeEEEEeeCCCCCCCce
Confidence                                                      23344555666643 67788899999999999999999


Q ss_pred             EEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        244 FFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       244 FFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||||+++.|+||++|||||||++|||+
T Consensus        98 FfIt~~~~p~Ldg~~tvFG~V~~G~dv  124 (148)
T cd01927          98 FFITTVATPWLDNKHTVFGRVVKGMDV  124 (148)
T ss_pred             EEEEcCCCcccCCCceEEEEEEcCHHH
Confidence            999999999999999999999999996

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=2e-35  Score=267.00  Aligned_cols=141  Identities=28%  Similarity=0.384  Sum_probs=121.7

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCc--------eecCceeEEeccC-ccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF--------GYQGSSFHRIIPD-FVSFMTKRQSLKSRFSKFR   71 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~--------~Y~g~~f~rvi~~-~~~~~g~~~~~~~~~~~~~   71 (287)
                      ||++|++++.|+|+||||.|.||+||+||++||+|+.++        +|+++.||||+++ |                  
T Consensus        57 ldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f------------------  118 (249)
T PTZ00221         57 LDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNN------------------  118 (249)
T ss_pred             EEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCC------------------
Confidence            799999999999999999999999999999999876542        2999999999986 6                  


Q ss_pred             cccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCC
Q psy13279         72 FDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPG  151 (287)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G  151 (287)
                                                                  +||+||+...                          
T Consensus       119 --------------------------------------------~iqgGD~~~~--------------------------  128 (249)
T PTZ00221        119 --------------------------------------------IIVLGELDSF--------------------------  128 (249)
T ss_pred             --------------------------------------------EEEeCCCCCC--------------------------
Confidence                                                        8888875420                          


Q ss_pred             ceeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhh
Q psy13279        152 VLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLS  231 (287)
Q Consensus       152 ~l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~ls  231 (287)
                                                                             +.++||.+|.+|++.++|+++|+||
T Consensus       129 -------------------------------------------------------g~s~~G~~f~dE~~~~~h~~~G~Ls  153 (249)
T PTZ00221        129 -------------------------------------------------------NVSSTGTPIADEGYRHRHTERGLLT  153 (249)
T ss_pred             -------------------------------------------------------CccCCCCcccCccccccCCCCCEEE
Confidence                                                                   1123456688888888999999999


Q ss_pred             hhhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCCC
Q psy13279        232 MANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGEE  285 (287)
Q Consensus       232 MA~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge~  285 (287)
                      |||.+|++++||||||++++||||++|+|||+|++||||             +|+.+| .|..||+-
T Consensus       154 Man~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V-~I~~Cgvl  219 (249)
T PTZ00221        154 MISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPV-TVSFCGAL  219 (249)
T ss_pred             eCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCe-EEEECeEe
Confidence            999999999999999999999999999999999999993             677777 88888763

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=4.8e-35  Score=248.10  Aligned_cols=123  Identities=48%  Similarity=0.757  Sum_probs=106.6

Q ss_pred             ECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCC
Q psy13279          5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHS   84 (287)
Q Consensus         5 i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (287)
                      +.+|+.|+|+||||.+.||+||+||++||  +.+| |+++.||||+|+|                               
T Consensus         4 ~l~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~f-------------------------------   49 (153)
T cd01928           4 TLHTNLGDIKIELFCDDCPKACENFLALC--ASGY-YNGCIFHRNIKGF-------------------------------   49 (153)
T ss_pred             EEEEccccEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCcEEEEeCCCC-------------------------------
Confidence            45799999999999999999999999999  8899 9999999999999                               


Q ss_pred             CCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCC
Q psy13279         85 FPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNG  164 (287)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~  164 (287)
                                                     ++|+||+.. ++++                                   
T Consensus        50 -------------------------------~iq~Gd~~~-~g~g-----------------------------------   62 (153)
T cd01928          50 -------------------------------MVQTGDPTG-TGKG-----------------------------------   62 (153)
T ss_pred             -------------------------------EEEccccCC-CCCC-----------------------------------
Confidence                                           899988653 2222                                   


Q ss_pred             CceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcCCCCCCce
Q psy13279        165 SQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQ  243 (287)
Q Consensus       165 SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~p~s~~SQ  243 (287)
                                                                +.++|+.++++|.. .++|+++|+||||+.++++++||
T Consensus        63 ------------------------------------------~~~~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~Sq  100 (153)
T cd01928          63 ------------------------------------------GESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQ  100 (153)
T ss_pred             ------------------------------------------CCccCCCccccccccCCCcCCCcEEEEeeCCCCCcccE
Confidence                                                      22334455666653 56788999999999999999999


Q ss_pred             EEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        244 FFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       244 FFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      |||++++.|+||++|||||||++|||+
T Consensus       101 FfI~~~~~~~Ld~~~tvFG~V~~G~dv  127 (153)
T cd01928         101 FFITYAKQPHLDGKYTVFGKVIDGFET  127 (153)
T ss_pred             EEEEeCCCcccCCCceEEEEEEeCHHH
Confidence            999999999999999999999999996

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=4e-35  Score=246.82  Aligned_cols=122  Identities=48%  Similarity=0.802  Sum_probs=106.5

Q ss_pred             CceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCC
Q psy13279          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSF   85 (287)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (287)
                      .+|+.|+|+||||.+.||+||+||++||  +++| |+++.||||+|+|                                
T Consensus         2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f--------------------------------   46 (146)
T cd01922           2 LETTMGEITLELYWNHAPKTCKNFYELA--KRGY-YNGTIFHRLIKDF--------------------------------   46 (146)
T ss_pred             eEeccccEEEEEcCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEcCCc--------------------------------
Confidence            5799999999999999999999999999  8999 9999999999999                                


Q ss_pred             CCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCCC
Q psy13279         86 PIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGS  165 (287)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~S  165 (287)
                                                    ++|+||+.. ++.+                                    
T Consensus        47 ------------------------------~iq~Gd~~~-~g~~------------------------------------   59 (146)
T cd01922          47 ------------------------------MIQGGDPTG-TGRG------------------------------------   59 (146)
T ss_pred             ------------------------------EEEecccCC-CCCC------------------------------------
Confidence                                          899988643 2222                                    


Q ss_pred             ceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCceE
Q psy13279        166 QFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGSQF  244 (287)
Q Consensus       166 qFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~SQF  244 (287)
                                                               +.++|+.++++|. ..++|+++|+||||+.+|++++|||
T Consensus        60 -----------------------------------------~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqF   98 (146)
T cd01922          60 -----------------------------------------GASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQF   98 (146)
T ss_pred             -----------------------------------------cccccCCCcccccccCcCCCCCeEEEEeeCCCCCCccEE
Confidence                                                     2234455566663 4678889999999999999999999


Q ss_pred             EEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        245 FLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       245 FIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      |||+++.|+||++|||||||++||||
T Consensus        99 fIt~~~~p~Ld~~~tvFG~V~~G~dv  124 (146)
T cd01922          99 FITLAPTPWLDGKHTIFGRVSKGMKV  124 (146)
T ss_pred             EEEcCCCcccCCCCCEEEEEEcCHHH
Confidence            99999999999999999999999997

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=6.5e-35  Score=248.78  Aligned_cols=124  Identities=46%  Similarity=0.734  Sum_probs=108.0

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      .+..|+.|+|+||||.+.||+||+||++||  +++| |+++.||||+|+|                              
T Consensus         2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~~------------------------------   48 (159)
T cd01923           2 VRLHTNKGDLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNF------------------------------   48 (159)
T ss_pred             EEEEEccccEEEEEeCCCChHHHHHHHHHH--hcCc-cCCcEEEEEeCCc------------------------------
Confidence            356799999999999999999999999999  8999 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      ++|+||+.. ++                                    
T Consensus        49 --------------------------------~iq~Gd~~~-~g------------------------------------   59 (159)
T cd01923          49 --------------------------------MIQGGDPTG-TG------------------------------------   59 (159)
T ss_pred             --------------------------------EEEecccCC-CC------------------------------------
Confidence                                            889888643 22                                    


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~S  242 (287)
                                                               .++.++|+.++++|. ..++|+++|+||||+.++++++|
T Consensus        60 -----------------------------------------~~~~~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~s   98 (159)
T cd01923          60 -----------------------------------------RGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGS   98 (159)
T ss_pred             -----------------------------------------CCCccccCCccCcccccCcCcCCCcEEEEeeCCCCCccc
Confidence                                                     223345556666673 46678899999999999999999


Q ss_pred             eEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        243 QFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       243 QFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      |||||+++.|+||++|||||||++|||+
T Consensus        99 qFfIt~~~~~~Ld~~~~vFG~V~~G~~v  126 (159)
T cd01923          99 QFFITYRSCKHLDGKHTVFGRVVGGLET  126 (159)
T ss_pred             EEEEECCCCcccCCCccEEEEEEcCHHH
Confidence            9999999999999999999999999995

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>KOG0882|consensus

Probab=100.00  E-value=6.6e-35  Score=275.96  Aligned_cols=125  Identities=42%  Similarity=0.654  Sum_probs=116.3

Q ss_pred             eEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCcc
Q psy13279          3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTR   82 (287)
Q Consensus         3 ~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (287)
                      -+|+-|+.|+|.|.||++.+|+||+||-.-|  ++|| |+|..|||||++|                             
T Consensus       406 ~aiihtt~gdi~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~f-----------------------------  453 (558)
T KOG0882|consen  406 AAIIHTTQGDIHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGF-----------------------------  453 (558)
T ss_pred             ceEEEecccceEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhh-----------------------------
Confidence            4788999999999999999999999999999  9999 9999999999999                             


Q ss_pred             CCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCC
Q psy13279         83 HSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNT  162 (287)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s  162 (287)
                                                       |||+|||+                                       
T Consensus       454 ---------------------------------miqtgdp~---------------------------------------  461 (558)
T KOG0882|consen  454 ---------------------------------MIQTGDPL---------------------------------------  461 (558)
T ss_pred             ---------------------------------eeecCCCC---------------------------------------
Confidence                                             77766654                                       


Q ss_pred             CCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCC
Q psy13279        163 NGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNG  241 (287)
Q Consensus       163 ~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~  241 (287)
                                                            + +|+||+||||..|+||. +.|+|+++-+|||||+|||+||
T Consensus       462 --------------------------------------g-~gtggesiwg~dfedefh~~lrhdrpft~smanag~ntng  502 (558)
T KOG0882|consen  462 --------------------------------------G-DGTGGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNG  502 (558)
T ss_pred             --------------------------------------C-CCCCCcccccccchhhcCcccccCCCceEEecccCCCCCC
Confidence                                                  3 77888899999999994 6899999999999999999999


Q ss_pred             ceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        242 SQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       242 SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||||||+.++||||+++||||||+.||||
T Consensus       503 sqffit~~~tpwld~khtvfgrv~~gm~v  531 (558)
T KOG0882|consen  503 SQFFITTVPTPWLDGKHTVFGRVTAGMDV  531 (558)
T ss_pred             ceEEEEecCccccCCcceeEEEEecchhH
Confidence            99999999999999999999999999996

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=3.8e-34  Score=245.62  Aligned_cols=130  Identities=32%  Similarity=0.531  Sum_probs=106.7

Q ss_pred             ECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCC
Q psy13279          5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHS   84 (287)
Q Consensus         5 i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (287)
                      +.+|+.|+|+||||.+.||+||+||++||  +.+| |+++.||||+++|                               
T Consensus         1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~--~~~~-Y~g~~fhrvi~~f-------------------------------   46 (166)
T cd01921           1 LLETTLGDLVIDLFTDECPLACLNFLKLC--KLKY-YNFCLFYNVQKDF-------------------------------   46 (166)
T ss_pred             CcEeccCCEEEEEcCCCCCHHHHHHHHHH--hcCC-cCCCEEEEEeCCc-------------------------------
Confidence            35799999999999999999999999999  8999 9999999999999                               


Q ss_pred             CCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCC
Q psy13279         85 FPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNG  164 (287)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~  164 (287)
                                                     +||+||+.. +++++.++|+...                          
T Consensus        47 -------------------------------~iQgGd~~~-~g~~~~~~~~~~~--------------------------   68 (166)
T cd01921          47 -------------------------------IAQTGDPTG-TGAGGESIYSQLY--------------------------   68 (166)
T ss_pred             -------------------------------eEEECCcCC-CCCCCcccccccc--------------------------
Confidence                                           999999864 4444332221000                          


Q ss_pred             CceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCce
Q psy13279        165 SQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGSQ  243 (287)
Q Consensus       165 SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~SQ  243 (287)
                                                      ++            .+..+.+|. ..++|+++|+|||||.++++++||
T Consensus        69 --------------------------------~~------------~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQ  104 (166)
T cd01921          69 --------------------------------GR------------QARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQ  104 (166)
T ss_pred             --------------------------------cc------------cCcccCcccCCccccCCceEEEEeECCCCCccce
Confidence                                            00            022355554 467899999999999999999999


Q ss_pred             EEEEcCC-CCCCCCCccEEEEeeecccc
Q psy13279        244 FFLCTTK-QEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       244 FFIt~g~-~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||||+++ .|+||++|||||||++||||
T Consensus       105 FfIt~~~~~~~Ldg~~tvFG~Vi~G~dv  132 (166)
T cd01921         105 FYITLGENLDYLDGKHTVFGQVVEGFDV  132 (166)
T ss_pred             EEEEcCCCCcccCCCccEEEEEEcCHHH
Confidence            9999975 79999999999999999995

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>KOG0883|consensus

Probab=100.00  E-value=2.6e-34  Score=267.47  Aligned_cols=122  Identities=45%  Similarity=0.750  Sum_probs=113.7

Q ss_pred             CceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCC
Q psy13279          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSF   85 (287)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (287)
                      ..|+.|.|-|||+.|.||++|+||+.||  ++|| |+++.|||.|++|                                
T Consensus       282 l~Tn~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynnt~FHRsIrnF--------------------------------  326 (518)
T KOG0883|consen  282 LVTNHGPLNLELHCDYAPRACENFITLC--KNGY-YNNTIFHRSIRNF--------------------------------  326 (518)
T ss_pred             EeccCCceeeEeecCcchHHHHHHHHHH--hccc-ccchHHHHHHHHH--------------------------------
Confidence            3689999999999999999999999999  9999 9999999999998                                


Q ss_pred             CCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCCC
Q psy13279         86 PIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGS  165 (287)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~S  165 (287)
                                                    |||||||+                                          
T Consensus       327 ------------------------------miQGGDPT------------------------------------------  334 (518)
T KOG0883|consen  327 ------------------------------MIQGGDPT------------------------------------------  334 (518)
T ss_pred             ------------------------------eeeCCCCC------------------------------------------
Confidence                                          67666654                                          


Q ss_pred             ceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCceE
Q psy13279        166 QFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGSQF  244 (287)
Q Consensus       166 qFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~SQF  244 (287)
                                                         + +|.||+||||.+|.||. ..+.|+.+|+|||||+|||+|+|||
T Consensus       335 -----------------------------------G-TG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQF  378 (518)
T KOG0883|consen  335 -----------------------------------G-TGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQF  378 (518)
T ss_pred             -----------------------------------C-CCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceE
Confidence                                               3 77889999999999995 6899999999999999999999999


Q ss_pred             EEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        245 FLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       245 FIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||+++.+-|||++|||||+|+-|+|+
T Consensus       379 FItyrsckhLd~KHTIFGrvVGGldt  404 (518)
T KOG0883|consen  379 FITYRSCKHLDNKHTIFGRVVGGLDT  404 (518)
T ss_pred             EEEecchhhccccceeeeeeeccHHH
Confidence            99999999999999999999999995

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=5.4e-33  Score=239.62  Aligned_cols=123  Identities=40%  Similarity=0.691  Sum_probs=105.5

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      .+..|++|+|+||||.+.||+||+||++||  +++| |+++.||||+++|                              
T Consensus         8 v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~--~~~~-Y~~~~f~Rvi~~f------------------------------   54 (171)
T cd01925           8 VILKTTAGDIDIELWSKEAPKACRNFIQLC--LEGY-YDNTIFHRVVPGF------------------------------   54 (171)
T ss_pred             EEEEEccccEEEEEeCCCChHHHHHHHHHH--hcCC-CCCCEEEEEcCCc------------------------------
Confidence            456899999999999999999999999999  8999 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      ++|+||+.. +++                                   
T Consensus        55 --------------------------------~iQgGd~~~-~g~-----------------------------------   66 (171)
T cd01925          55 --------------------------------IIQGGDPTG-TGT-----------------------------------   66 (171)
T ss_pred             --------------------------------EEEccccCC-CCc-----------------------------------
Confidence                                            899888653 222                                   


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcCCCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~p~s~~S  242 (287)
                                                                ++.++|+.++.+|.. .++|+++|+||||+.++++++|
T Consensus        67 ------------------------------------------g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~s  104 (171)
T cd01925          67 ------------------------------------------GGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGS  104 (171)
T ss_pred             ------------------------------------------cCcccCCCccCcccccCcCCCCCcEEEECcCCCCCccc
Confidence                                                      233455566766743 5678899999999999999999


Q ss_pred             eEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        243 QFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       243 QFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      |||||+++.|+||++|||||+|+ |+++
T Consensus       105 qFfIt~~~~~~ldg~~tvFG~V~-g~~~  131 (171)
T cd01925         105 QFFFTLDKADELNNKHTLFGKVT-GDTI  131 (171)
T ss_pred             EEEEEcCCCcccCCCceEEEEEE-ECcH
Confidence            99999999999999999999998 5443

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>KOG0884|consensus

Probab=100.00  E-value=1.9e-33  Score=225.18  Aligned_cols=121  Identities=48%  Similarity=0.750  Sum_probs=111.0

Q ss_pred             ceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCCC
Q psy13279          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFP   86 (287)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (287)
                      .|..|+|.||||.+.+|++|+||+.||  ...| |+++.|||-+|+|                                 
T Consensus         6 ht~~gdikiev~~e~tpktce~~l~~~--~~~~-~n~~~~~~~~~~f---------------------------------   49 (161)
T KOG0884|consen    6 HTDVGDIKIEVFCERTPKTCENFLALC--ASDY-YNGCIFHRNIKGF---------------------------------   49 (161)
T ss_pred             eeccCcEEEEEEecCChhHHHHHHHHh--hhhh-ccceeecCCCCCc---------------------------------
Confidence            578899999999999999999999999  8889 9999999999998                                 


Q ss_pred             CCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCCCc
Q psy13279         87 IPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQ  166 (287)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~Sq  166 (287)
                                                   |+|.||++-                                          
T Consensus        50 -----------------------------~v~~~~~~~------------------------------------------   58 (161)
T KOG0884|consen   50 -----------------------------MVQTGDPTH------------------------------------------   58 (161)
T ss_pred             -----------------------------EEEeCCCCC------------------------------------------
Confidence                                         777666432                                          


Q ss_pred             eeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCceEE
Q psy13279        167 FFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGSQFF  245 (287)
Q Consensus       167 FfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~SQFF  245 (287)
                                                          +|.||.||||.+|+||. .-++|+.+|++||||++||+|+||||
T Consensus        59 ------------------------------------tgrgg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqff  102 (161)
T KOG0884|consen   59 ------------------------------------TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFF  102 (161)
T ss_pred             ------------------------------------CCCCCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEE
Confidence                                                66788899999999994 57899999999999999999999999


Q ss_pred             EEcCCCCCCCCCccEEEEeeecccc
Q psy13279        246 LCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       246 It~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||.++.||||=+|||||+|++|+|+
T Consensus       103 ity~kq~hldmkytvfgkvidg~et  127 (161)
T KOG0884|consen  103 ITYGKQPHLDMKYTVFGKVIDGLET  127 (161)
T ss_pred             EEecCCCccceeEeeeeeeccchhh
Confidence            9999999999999999999999995

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=99.98  E-value=2.4e-32  Score=236.57  Aligned_cols=142  Identities=30%  Similarity=0.432  Sum_probs=104.8

Q ss_pred             ceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCCC
Q psy13279          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFP   86 (287)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (287)
                      .|+.|+|+||||.+.||+||+||++||  +++| |+++.||||+|+|                                 
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRVi~~f---------------------------------   46 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGF---------------------------------   46 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHH--HhCC-cCCCEEEEecCCc---------------------------------
Confidence            689999999999999999999999999  8999 9999999999999                                 


Q ss_pred             CCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCCCc
Q psy13279         87 IPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQ  166 (287)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~Sq  166 (287)
                                                   |+|+||+.. .+++..     ..  +.  ..+         +..|.     
T Consensus        47 -----------------------------viQgGdp~~-~~~~~~-----~~--~~--~~~---------~~~p~-----   73 (176)
T cd01924          47 -----------------------------VVQTGDPQG-KNPGFP-----DP--ET--GKS---------RTIPL-----   73 (176)
T ss_pred             -----------------------------EEEecCCCC-CCCCcc-----cc--cc--ccc---------ccccc-----
Confidence                                         888888764 222211     00  00  000         00000     


Q ss_pred             eeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcc-----cccccccccCchhhhhhhhcC--CCC
Q psy13279        167 FFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKF-----EDENFILKHTGPGVLSMANSG--PNT  239 (287)
Q Consensus       167 FfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~-----~~E~~~~~h~~~G~lsMA~~~--p~s  239 (287)
                                                -++       .+..+.++|+.++     .+++..++|+++|+|||||.+  |++
T Consensus        74 --------------------------e~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns  120 (176)
T cd01924          74 --------------------------EIK-------PEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNS  120 (176)
T ss_pred             --------------------------eec-------ccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCC
Confidence                                      000       0001122333322     245667789999999999988  699


Q ss_pred             CCceEEEEcC-------CCCCCCCCccEEEEeeecccc
Q psy13279        240 NGSQFFLCTT-------KQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       240 ~~SQFFIt~g-------~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ++|||||+++       +.||||++|||||+|++||||
T Consensus       121 ~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dv  158 (176)
T cd01924         121 ASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDI  158 (176)
T ss_pred             ccceEEEEeccccccCCCCCccCCCceEEEEEecCHHH
Confidence            9999999998       789999999999999999997

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=99.97  E-value=8.1e-32  Score=230.84  Aligned_cols=122  Identities=28%  Similarity=0.418  Sum_probs=98.5

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      .+..|+.|+|+|+||.+.||+||+||++||  +.+| |+++.||||+|+|                              
T Consensus         2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f------------------------------   48 (164)
T PRK10791          2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGF------------------------------   48 (164)
T ss_pred             EEEEEccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEecCc------------------------------
Confidence            356899999999999999999999999999  8999 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      ++|+||+...  .+..                                
T Consensus        49 --------------------------------~iQgGd~~~~--~~~~--------------------------------   62 (164)
T PRK10791         49 --------------------------------MIQGGGFEPG--MKQK--------------------------------   62 (164)
T ss_pred             --------------------------------EEEeCCcCCC--CCcC--------------------------------
Confidence                                            9999975320  0000                                


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcC-CCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSG-PNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~-p~s~~S  242 (287)
                                                                    .++.++.+|.....++.+|+|||||.+ |++++|
T Consensus        63 ----------------------------------------------~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~S   96 (164)
T PRK10791         63 ----------------------------------------------ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATA   96 (164)
T ss_pred             ----------------------------------------------CCCCCcCCcccccccCCCcEEEECCCCCcCCccc
Confidence                                                          001224444322234579999999986 999999


Q ss_pred             eEEEEcCCCCCCC--------CCccEEEEeeecccc
Q psy13279        243 QFFLCTTKQEICV--------KLLDLLASLDAGWET  270 (287)
Q Consensus       243 QFFIt~g~~~~LD--------~~ytVfG~VieG~dv  270 (287)
                      ||||++++.++||        ++|||||||++||||
T Consensus        97 QFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dv  132 (164)
T PRK10791         97 QFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDV  132 (164)
T ss_pred             eEEEEecCchhhcccccccCCCCccEEEEEecCHHH
Confidence            9999999988886        379999999999996

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=99.97  E-value=1.2e-31  Score=227.68  Aligned_cols=120  Identities=28%  Similarity=0.415  Sum_probs=99.4

Q ss_pred             CceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCC
Q psy13279          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSF   85 (287)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (287)
                      .+|+.|+|+||||.+.||+||+||++||  +++| |+++.||||+|+|                                
T Consensus         2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f--------------------------------   46 (155)
T cd01920           2 FQTSLGDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGF--------------------------------   46 (155)
T ss_pred             cEecceeEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCc--------------------------------
Confidence            3689999999999999999999999999  8999 9999999999999                                


Q ss_pred             CCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCCC
Q psy13279         86 PIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGS  165 (287)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~S  165 (287)
                                                    |+|+||+.... .+.                                   
T Consensus        47 ------------------------------~iQ~Gd~~~~~-~~~-----------------------------------   60 (155)
T cd01920          47 ------------------------------VIQGGGFTPDL-AQK-----------------------------------   60 (155)
T ss_pred             ------------------------------EEEeCCCCCCC-Ccc-----------------------------------
Confidence                                          99999875410 000                                   


Q ss_pred             ceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcC-CCCCCceE
Q psy13279        166 QFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSG-PNTNGSQF  244 (287)
Q Consensus       166 qFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~-p~s~~SQF  244 (287)
                                                                  .++.++.+|.....|+++|+||||+.+ |++++|||
T Consensus        61 --------------------------------------------~~~~~~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqF   96 (155)
T cd01920          61 --------------------------------------------ETLKPIKNEAGNGLSNTRGTIAMARTNAPDSATSQF   96 (155)
T ss_pred             --------------------------------------------ccCCcccCcccccccCCceEEEECCCCCCCCccceE
Confidence                                                        001224444333345789999999976 89999999


Q ss_pred             EEEcCCCCCCCC-----CccEEEEeeecccc
Q psy13279        245 FLCTTKQEICVK-----LLDLLASLDAGWET  270 (287)
Q Consensus       245 FIt~g~~~~LD~-----~ytVfG~VieG~dv  270 (287)
                      ||++++.|+||.     +|||||+|++||||
T Consensus        97 fI~~~~~~~ld~~~~~~~ytvFG~V~eG~dv  127 (155)
T cd01920          97 FINLKDNASLDYQNEQWGYTVFGEVTEGMDV  127 (155)
T ss_pred             EEECCCchhcCCcccCCCccEEEEEecCHHH
Confidence            999999999995     89999999999996

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=99.97  E-value=1.9e-31  Score=233.54  Aligned_cols=122  Identities=25%  Similarity=0.421  Sum_probs=101.1

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      .+.+|+.|+|+||||.+.||+||+||++||  +++| |+++.||||+|+|                              
T Consensus        31 v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f------------------------------   77 (190)
T PRK10903         31 VLLTTSAGNIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGF------------------------------   77 (190)
T ss_pred             EEEEeccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCc------------------------------
Confidence            356899999999999999999999999999  8999 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      |+|+||+....+ +                                  
T Consensus        78 --------------------------------~iQgG~~~~~~~-~----------------------------------   90 (190)
T PRK10903         78 --------------------------------MIQGGGFTEQMQ-Q----------------------------------   90 (190)
T ss_pred             --------------------------------eEEeCCcCCCCC-C----------------------------------
Confidence                                            999998653100 0                                  


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcC-CCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSG-PNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~-p~s~~S  242 (287)
                                                                   ..++.++.+|.....|+++|+|||||.+ |++++|
T Consensus        91 ---------------------------------------------~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~S  125 (190)
T PRK10903         91 ---------------------------------------------KKPNPPIKNEADNGLRNTRGTIAMARTADKDSATS  125 (190)
T ss_pred             ---------------------------------------------CCCCCcccCcccccCcCCCcEEEeCCCCCCCCccc
Confidence                                                         0001224445433456789999999976 999999


Q ss_pred             eEEEEcCCCCCCCC-----CccEEEEeeecccc
Q psy13279        243 QFFLCTTKQEICVK-----LLDLLASLDAGWET  270 (287)
Q Consensus       243 QFFIt~g~~~~LD~-----~ytVfG~VieG~dv  270 (287)
                      |||||+++.++||+     +|||||+|++||||
T Consensus       126 QFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dv  158 (190)
T PRK10903        126 QFFINVADNAFLDHGQRDFGYAVFGKVVKGMDV  158 (190)
T ss_pred             EEEEECcCcccccCCccCCCccEEEEEecCHHH
Confidence            99999999999984     99999999999996

>KOG0865|consensus

Probab=99.97  E-value=9.9e-32  Score=229.45  Aligned_cols=134  Identities=63%  Similarity=1.061  Sum_probs=114.9

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      +|+++.++++|+++++|+.|..|+|++||..||+|+++++|+++.|||+++.+                           
T Consensus         8 ~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~---------------------------   60 (167)
T KOG0865|consen    8 FDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPII---------------------------   60 (167)
T ss_pred             eeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccc---------------------------
Confidence            69999999999999999999999999999999999999999999999964442                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                      ..+|+||||++.+                                   
T Consensus        61 --------------------------------~~fm~qggDft~h-----------------------------------   73 (167)
T KOG0865|consen   61 --------------------------------PGFMCQGGDFTCH-----------------------------------   73 (167)
T ss_pred             --------------------------------cceeeccCccccc-----------------------------------
Confidence                                            0016666665554                                   


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                +|+++.|||++.|+||++.++|..+|+|||||++||+|
T Consensus        74 ------------------------------------------ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntn  111 (167)
T KOG0865|consen   74 ------------------------------------------NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTN  111 (167)
T ss_pred             ------------------------------------------CCccceEecccccCCcCcEEecCCCCeeehhhcCCCcc
Confidence                                                      44555556666677777778888889999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      +||||||+.+++|||+++.|||+|.+||++
T Consensus       112 gsqffictaktewLdgkhVVfGkv~eGm~i  141 (167)
T KOG0865|consen  112 GSQFFICTAKTEWLDGKHVVFGKVKEGMDI  141 (167)
T ss_pred             ccEEEEEccccccccCceeEcCceEcccch
Confidence            999999999999999999999999999995

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=99.96  E-value=4.7e-29  Score=208.72  Aligned_cols=121  Identities=48%  Similarity=0.719  Sum_probs=102.8

Q ss_pred             CceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCC
Q psy13279          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSF   85 (287)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (287)
                      ..|+.|+|+||||.+.||++|+||++||  +.++ |+++.||||+|++                                
T Consensus         2 ~~T~~G~i~IeL~~~~~P~~~~nF~~l~--~~~~-Y~~~~f~rv~~~~--------------------------------   46 (146)
T cd00317           2 LDTTKGRIVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGF--------------------------------   46 (146)
T ss_pred             eEeccCcEEEEEcCCCChHHHHHHHHHH--hcCC-cCCCEEEEEeCCC--------------------------------
Confidence            5789999999999999999999999999  8888 9999999999999                                


Q ss_pred             CCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCCC
Q psy13279         86 PIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGS  165 (287)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~S  165 (287)
                                                    ++|+||+......+                                    
T Consensus        47 ------------------------------~iq~Gd~~~~~~~~------------------------------------   60 (146)
T cd00317          47 ------------------------------MIQGGDPTGTGGGG------------------------------------   60 (146)
T ss_pred             ------------------------------eEEECCCCCCCCCC------------------------------------
Confidence                                          89999876521100                                    


Q ss_pred             ceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccccc-ccCchhhhhhhhcCCCCCCceE
Q psy13279        166 QFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFIL-KHTGPGVLSMANSGPNTNGSQF  244 (287)
Q Consensus       166 qFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~-~h~~~G~lsMA~~~p~s~~SQF  244 (287)
                                                                 +.++..+++|.... +|+++|+|+|++.++++++|||
T Consensus        61 -------------------------------------------~~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF   97 (146)
T cd00317          61 -------------------------------------------SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQF   97 (146)
T ss_pred             -------------------------------------------CcCCCccCCccccCcCcCCCcEEEEeeCCCCCcccEE
Confidence                                                       11133456665433 3889999999999999999999


Q ss_pred             EEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        245 FLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       245 FIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||++.+.++||++|+|||+|++|||+
T Consensus        98 ~Itl~~~~~ld~~~~vfG~V~~G~~v  123 (146)
T cd00317          98 FITTAPTPHLDGKHTVFGKVVEGMDV  123 (146)
T ss_pred             EEECCCCcccCCCceEEEEEeCCHHH
Confidence            99999999999999999999999996

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>KOG0885|consensus

Probab=99.96  E-value=2.7e-29  Score=233.09  Aligned_cols=119  Identities=39%  Similarity=0.684  Sum_probs=108.5

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      .|..|+.|+|-|||++..+|++|.||+.||  -.|| |+|+.|||++|+|                              
T Consensus        15 vil~TT~G~I~iELW~kE~P~acrnFiqKO--Gegy-y~nt~fhrlvp~f------------------------------   61 (439)
T KOG0885|consen   15 VILKTTKGDIDIELWAKECPKACRNFIQLC--LEGY-YDNTEFHRLVPGF------------------------------   61 (439)
T ss_pred             EEEEeccCceeeeehhhhhhHHHHHHHHHH--Hhcc-ccCceeeeeccch------------------------------
Confidence            366899999999999999999999999999  9999 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      .+|||||++                                       
T Consensus        62 --------------------------------~~Qggdp~~---------------------------------------   70 (439)
T KOG0885|consen   62 --------------------------------LVQGGDPTG---------------------------------------   70 (439)
T ss_pred             --------------------------------hcccCCCCC---------------------------------------
Confidence                                            566665543                                       


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchhhhhhhhcCCCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G~lsMA~~~p~s~~S  242 (287)
                                                             +|+||.||||.+|.+| +..+++.++|+|+|||++.+.|||
T Consensus        71 ---------------------------------------~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngs  111 (439)
T KOG0885|consen   71 ---------------------------------------TGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGS  111 (439)
T ss_pred             ---------------------------------------CCCCccccccccchhhcCcceeeeccceeeecccCCCCCCc
Confidence                                                   6777888888888888 468899999999999999999999


Q ss_pred             eEEEEcCCCCCCCCCccEEEEee
Q psy13279        243 QFFLCTTKQEICVKLLDLLASLD  265 (287)
Q Consensus       243 QFFIt~g~~~~LD~~ytVfG~Vi  265 (287)
                      |||+|++++||||+++||||+|+
T Consensus       112 qFfftl~~~~el~nk~tiFGKVt  134 (439)
T KOG0885|consen  112 QFFFTLGDTPELNNKHTIFGKVT  134 (439)
T ss_pred             eEEEEecCChHhcccCceeeeec
Confidence            99999999999999999999998

>KOG0415|consensus

Probab=99.95  E-value=1.1e-28  Score=227.81  Aligned_cols=130  Identities=35%  Similarity=0.527  Sum_probs=110.4

Q ss_pred             ECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCC
Q psy13279          5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHS   84 (287)
Q Consensus         5 i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (287)
                      +++|++|+|+|+||.+..|++|.||++||  +..| |+.+.||.|.++|                               
T Consensus         4 lieTtlGDlvIDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f-------------------------------   49 (479)
T KOG0415|consen    4 LIETTLGDLVIDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDF-------------------------------   49 (479)
T ss_pred             EEEeecccEEeeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccc-------------------------------
Confidence            45899999999999999999999999999  9999 9999999999999                               


Q ss_pred             CCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCC
Q psy13279         85 FPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNG  164 (287)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~  164 (287)
                                                     .+|.|||+. .|.|+.|+|+.-.                          
T Consensus        50 -------------------------------~aQTGDPtG-tG~GG~si~~~ly--------------------------   71 (479)
T KOG0415|consen   50 -------------------------------TAQTGDPTG-TGDGGESIYGVLY--------------------------   71 (479)
T ss_pred             -------------------------------eeecCCCCC-CCCCcceeeeecc--------------------------
Confidence                                           788888776 6666655443221                          


Q ss_pred             CceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchhhhhhhhcCCCCCCce
Q psy13279        165 SQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQ  243 (287)
Q Consensus       165 SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G~lsMA~~~p~s~~SQ  243 (287)
                                      |                       .+     +..|.+| .++++|.+.|+|||++++.|.+|||
T Consensus        72 ----------------G-----------------------~q-----~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQ  107 (479)
T KOG0415|consen   72 ----------------G-----------------------EQ-----ARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQ  107 (479)
T ss_pred             ----------------c-----------------------cc-----chhhhhhhcccccccccceEEeecCCcccccce
Confidence                            0                       00     2236777 4689999999999999999999999


Q ss_pred             EEEEcCC-CCCCCCCccEEEEeeecccc
Q psy13279        244 FFLCTTK-QEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       244 FFIt~g~-~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||||+++ ..+||++|||||+|+||||+
T Consensus       108 F~iTlgenLdyLDg~htvfGqV~EG~dt  135 (479)
T KOG0415|consen  108 FFITLGENLDYLDGKHTVFGQVAEGFDT  135 (479)
T ss_pred             EEEEccccccccccccceeeehhhhHHH
Confidence            9999976 57999999999999999995

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=99.95  E-value=1.6e-27  Score=201.17  Aligned_cols=124  Identities=41%  Similarity=0.651  Sum_probs=99.8

Q ss_pred             CceE-eeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCC
Q psy13279          6 GKQE-VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHS   84 (287)
Q Consensus         6 ~~t~-~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (287)
                      +.|+ +|+|+||||.+.||++|+||++||  +.++ |+++.||||+|++                               
T Consensus         4 i~t~~~G~i~ieL~~~~aP~~~~nF~~l~--~~~~-y~g~~f~ri~~~~-------------------------------   49 (155)
T PF00160_consen    4 IETSGLGRIVIELFGDEAPKTVENFLRLC--TSGF-YDGTKFHRIIPNF-------------------------------   49 (155)
T ss_dssp             EEETTEEEEEEEEETTTSHHHHHHHHHHH--HTTS-STTEBEEEEETTT-------------------------------
T ss_pred             EEeCCccCEEEEEeCCCCcHHHHhhehhh--cccc-cCCceeecccccc-------------------------------
Confidence            3453 999999999999999999999999  7888 9999999999998                               


Q ss_pred             CCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCC
Q psy13279         85 FPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNG  164 (287)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~  164 (287)
                                                     ++|+|++......+..                                 
T Consensus        50 -------------------------------~i~~G~~~~~~~~~~~---------------------------------   65 (155)
T PF00160_consen   50 -------------------------------VIQGGDPTGNGGYGRE---------------------------------   65 (155)
T ss_dssp             -------------------------------EEEESSTTTSSSSTSE---------------------------------
T ss_pred             -------------------------------eeeeeeccCCCCcccc---------------------------------
Confidence                                           9999997652110000                                 


Q ss_pred             CceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcC--CCCCC
Q psy13279        165 SQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSG--PNTNG  241 (287)
Q Consensus       165 SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~--p~s~~  241 (287)
                                                                . ...+.++++|.. ...++++|+|+|++.+  +++++
T Consensus        66 ------------------------------------------~-~~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~  102 (155)
T PF00160_consen   66 ------------------------------------------D-STGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNG  102 (155)
T ss_dssp             ------------------------------------------E-BTTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBS
T ss_pred             ------------------------------------------c-ccCccccccccccccccccceeeeecccccCCCCCC
Confidence                                                      0 000223666652 3445589999999986  89999


Q ss_pred             ceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        242 SQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       242 SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      |||||++++.++||++|+|||+|++||++
T Consensus       103 sqF~I~l~~~~~ld~~~~vfG~V~~G~~v  131 (155)
T PF00160_consen  103 SQFFITLSDAPHLDGKYTVFGRVIEGMDV  131 (155)
T ss_dssp             SEEEEESSCGGGGTTTSEEEEEEEEHHHH
T ss_pred             ceEEeeccCCCccccceeeeeEEehhHHH
Confidence            99999999999999999999999999995

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0546|consensus

Probab=99.69  E-value=7.3e-18  Score=157.36  Aligned_cols=66  Identities=56%  Similarity=0.806  Sum_probs=61.3

Q ss_pred             CCCCCccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeee
Q psy13279        126 NGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFT  191 (287)
Q Consensus       126 ~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~  191 (287)
                      +|+|+.||||..++||++.++|+++++||||+.+||++|||||||+.+.    |+|+|||+|+.+..++.
T Consensus        84 nGtGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr  153 (372)
T KOG0546|consen   84 NGTGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVR  153 (372)
T ss_pred             CCCCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHH
Confidence            0368999999999999999999999999999999999999999999997    99999999999987763

>KOG0111|consensus

Probab=99.68  E-value=1.5e-17  Score=146.06  Aligned_cols=70  Identities=54%  Similarity=0.778  Sum_probs=66.5

Q ss_pred             cccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecccccc
Q psy13279        132 SIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGDFTN  201 (287)
Q Consensus       132 ~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd~~~  201 (287)
                      ||||.++++||+.|+|+.+|+|+||++++|+++||||||+.+.    +++++||.|++++.++.+|.|.|.+.+
T Consensus       210 siygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksg  283 (298)
T KOG0111|consen  210 SIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSG  283 (298)
T ss_pred             ccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCC
Confidence            6899999999999999999999999999999999999999886    999999999999999999999998765

>KOG0880|consensus

Probab=99.67  E-value=2.5e-17  Score=142.31  Aligned_cols=65  Identities=55%  Similarity=0.831  Sum_probs=61.6

Q ss_pred             CCCccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeee
Q psy13279        128 TGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQ  192 (287)
Q Consensus       128 ~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~  192 (287)
                      +|+.|+||.++++||+.|+|.++|.||||+.+|++++||||||+.+.    ++++|||++..+++++..
T Consensus       110 tGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~  178 (217)
T KOG0880|consen  110 TGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRK  178 (217)
T ss_pred             CCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHH
Confidence            56889999999999999999999999999999999999999999986    999999999999999853

>KOG0881|consensus

Probab=99.59  E-value=1.7e-16  Score=128.37  Aligned_cols=63  Identities=54%  Similarity=0.815  Sum_probs=58.8

Q ss_pred             CCccccCcccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeee
Q psy13279        129 GGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFT  191 (287)
Q Consensus       129 g~~~~~~~~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~  191 (287)
                      |+.|+||..+++| ...|+|+.+|.|+||+.+||+++|||||+|++.    +++++||+|..++.++.
T Consensus        71 GGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vik  138 (164)
T KOG0881|consen   71 GGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIK  138 (164)
T ss_pred             CccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHH
Confidence            5778999999999 568999999999999999999999999999997    99999999999998873

>KOG0879|consensus

Probab=99.55  E-value=2.5e-15  Score=122.98  Aligned_cols=62  Identities=50%  Similarity=0.730  Sum_probs=57.7

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeee
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFT  191 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~  191 (287)
                      ..++|+.++++||+.++|+.+|+|+||+++++++++||||+..+.    +++.+||+++.++-++.
T Consensus        87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~r  152 (177)
T KOG0879|consen   87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMR  152 (177)
T ss_pred             EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhh
Confidence            568999999999999999999999999999999999999999987    99999999998877663

>KOG0883|consensus

Probab=99.47  E-value=2.2e-14  Score=134.78  Aligned_cols=70  Identities=53%  Similarity=0.717  Sum_probs=62.9

Q ss_pred             CCCCCccccCcccccCc-ccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeee
Q psy13279        126 NGTGGKSIYGNKFEDEN-FVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQ  195 (287)
Q Consensus       126 ~~~g~~~~~~~~~~~e~-~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~Q  195 (287)
                      .|.|+.||||.++.+|. ..+.|+.+|+||||+++||+++|||||+..+.    +++++||+++-++.++..|..
T Consensus       336 TG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEn  410 (518)
T KOG0883|consen  336 TGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMEN  410 (518)
T ss_pred             CCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhc
Confidence            04578999999999995 58999999999999999999999999999997    899999999999999865554

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=3e-14  Score=121.10  Aligned_cols=61  Identities=36%  Similarity=0.524  Sum_probs=54.4

Q ss_pred             cccCcccccccC--CCceeccccC-CCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        138 FEDENFVLKHTG--PGVLSMANSG-PNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       138 ~~~e~~~~~h~~--~G~l~ma~~~-~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      +++|+....|++  +|+||||+.+ |++++|||||++.+.    ++|++||+|..+++++++|.++.-
T Consensus        68 f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~  135 (158)
T COG0652          68 FKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDT  135 (158)
T ss_pred             CcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCc
Confidence            577877777776  9999999999 999999999999987    799999999999999988888743

>KOG0865|consensus

Probab=99.44  E-value=7.2e-14  Score=119.70  Aligned_cols=69  Identities=59%  Similarity=0.950  Sum_probs=62.9

Q ss_pred             CCccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        129 GGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       129 g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      |+.|+|++++++|++.++|+.+|.|+||+.+|++++||||||+.+.    +++++||++.++++++..|..-|
T Consensus        77 ggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~g  149 (167)
T KOG0865|consen   77 GGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFG  149 (167)
T ss_pred             cceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccC
Confidence            3678999999999999999999999999999999999999999976    89999999999999986666533

>KOG0882|consensus

Probab=99.40  E-value=1.6e-13  Score=131.26  Aligned_cols=73  Identities=44%  Similarity=0.616  Sum_probs=66.1

Q ss_pred             CCCCCccccCcccccCc-ccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        126 NGTGGKSIYGNKFEDEN-FVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       126 ~~~g~~~~~~~~~~~e~-~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      .|+|+.||||..+++|. +.|+|+++-+||||+.+||++||||||++.+.    +++++||++..+++++.++.|..-
T Consensus       463 ~gtggesiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t  540 (558)
T KOG0882|consen  463 DGTGGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKT  540 (558)
T ss_pred             CCCCCcccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhccc
Confidence            04678999999999995 58999999999999999999999999999886    999999999999999987877654

>KOG0884|consensus

Probab=99.38  E-value=2.2e-13  Score=109.79  Aligned_cols=63  Identities=49%  Similarity=0.637  Sum_probs=57.7

Q ss_pred             CCccccCcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeee
Q psy13279        129 GGKSIYGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFT  191 (287)
Q Consensus       129 g~~~~~~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~  191 (287)
                      |+.|+||.++++|.. -++|+-+|+|+||+++|++++|||||+.+++    -+|++||+++.+++.++
T Consensus        62 gg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etld  129 (161)
T KOG0884|consen   62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLD  129 (161)
T ss_pred             CCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHH
Confidence            467899999999965 6899999999999999999999999999998    69999999999888874

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=99.37  E-value=3.6e-13  Score=115.41  Aligned_cols=64  Identities=53%  Similarity=0.807  Sum_probs=56.1

Q ss_pred             cCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        134 YGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       134 ~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      |+..+++|+..++|+++|+|+||+.++++++|||||++.+.    ++|++||+|+++++++++|.+..
T Consensus        81 ~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~  148 (164)
T cd01926          81 YGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVG  148 (164)
T ss_pred             cCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCC
Confidence            35567788888999999999999999999999999999886    79999999999999997776544

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PTZ00060 cyclophilin; Provisional

Probab=99.34  E-value=6.3e-13  Score=115.93  Aligned_cols=65  Identities=51%  Similarity=0.758  Sum_probs=56.9

Q ss_pred             cCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        134 YGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       134 ~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      |+..+++|...++|+++|+|+||+.++++++|||||++.+.    ++|++||+|+++++++++|...+.
T Consensus        97 ~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~  165 (183)
T PTZ00060         97 YGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT  165 (183)
T ss_pred             cccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC
Confidence            35567778888899999999999999999999999999885    799999999999999988876543

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=99.32  E-value=8.4e-13  Score=115.46  Aligned_cols=64  Identities=53%  Similarity=0.791  Sum_probs=55.2

Q ss_pred             cCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEE-EEeeeeeeeeecc
Q psy13279        134 YGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYY-IFLTRFTQMCQGG  197 (287)
Q Consensus       134 ~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~-~g~~vi~~m~QgG  197 (287)
                      |+..+++|+..++|+++|+|+||+.++++++|||||++.+.    ++|++||+|+ .+++++++|....
T Consensus        99 ~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~  167 (186)
T PLN03149         99 YGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVA  167 (186)
T ss_pred             cCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCC
Confidence            35567778778899999999999999999999999999886    8999999999 6999987765544

>KOG0885|consensus

Probab=99.12  E-value=4.9e-11  Score=111.92  Aligned_cols=56  Identities=43%  Similarity=0.687  Sum_probs=52.2

Q ss_pred             CCccccCcccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEE
Q psy13279        129 GGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYY  184 (287)
Q Consensus       129 g~~~~~~~~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~  184 (287)
                      |+.+|||.++.+| .+.++.+++|+|+||+.+.+.+|||||++|++.    +++++||++.
T Consensus        74 Ggesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVt  134 (439)
T KOG0885|consen   74 GGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVT  134 (439)
T ss_pred             CccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeec
Confidence            5779999999999 568999999999999999999999999999997    8999999987

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=99.11  E-value=6.5e-11  Score=102.69  Aligned_cols=57  Identities=28%  Similarity=0.358  Sum_probs=49.3

Q ss_pred             cCcccccccCCCceeccccC--CCCCCCceeEEeee-------c----cceeeeEEEEEEeeeeeeeeec
Q psy13279        140 DENFVLKHTGPGVLSMANSG--PNTNGSQFFLCTTS-------I----NKHYYYYYYYIFLTRFTQMCQG  196 (287)
Q Consensus       140 ~e~~~~~h~~~G~l~ma~~~--~~s~~SqFfI~l~~-------~----g~~~vfG~v~~g~~vi~~m~Qg  196 (287)
                      +++..++|+++|+||||+.+  +++++|||||++.+       .    ++|++||+|.+++++++.|..+
T Consensus        96 ~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~g  165 (176)
T cd01924          96 DEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKVG  165 (176)
T ss_pred             ccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhhcCC
Confidence            45677889999999999987  69999999999983       2    8999999999999999777554

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=99.08  E-value=5.3e-11  Score=100.37  Aligned_cols=63  Identities=44%  Similarity=0.568  Sum_probs=54.7

Q ss_pred             CcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        135 GNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       135 ~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +..+++|.. .++|.++|+|+||+.++++++|||||++.+.    ++|++||+|..+++++.+|.+..
T Consensus        65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~  132 (148)
T cd01927          65 GKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVK  132 (148)
T ss_pred             CCccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCC
Confidence            456777754 7889989999999999999999999999886    89999999999999997776654

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>PTZ00221 cyclophilin; Provisional

Probab=99.07  E-value=5.4e-11  Score=108.15  Aligned_cols=63  Identities=25%  Similarity=0.314  Sum_probs=56.7

Q ss_pred             CcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        135 GNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       135 ~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      |..+++|++.++|+++|+|+||+.++++++|||||++.+.    ++|++||+|+.+++++++|.+..
T Consensus       134 G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~  200 (249)
T PTZ00221        134 GTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLP  200 (249)
T ss_pred             CCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCC
Confidence            4568889889999999999999999999999999999986    89999999999999987776553

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=99.03  E-value=8.7e-11  Score=98.88  Aligned_cols=62  Identities=48%  Similarity=0.686  Sum_probs=53.7

Q ss_pred             CcccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeec
Q psy13279        135 GNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQG  196 (287)
Q Consensus       135 ~~~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~Qg  196 (287)
                      +.++++| ...++|+++|+|+||+.++++++|||||++.+.    ++|++||+|.++++++++|.+.
T Consensus        65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~  131 (146)
T cd01922          65 GKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEV  131 (146)
T ss_pred             CCCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhC
Confidence            4456777 457889999999999999999999999999886    8999999999999998776654

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=99.02  E-value=1.4e-10  Score=98.30  Aligned_cols=64  Identities=41%  Similarity=0.522  Sum_probs=55.2

Q ss_pred             cCcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        134 YGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       134 ~~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      |+..+++|.. .++|+++|+|+||+.++++++|||||++.+.    ++|++||+|.++++++++|.+..
T Consensus        67 ~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~  135 (153)
T cd01928          67 WGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLP  135 (153)
T ss_pred             CCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCC
Confidence            3556777864 6788899999999999999999999999886    89999999999999997776654

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=99.02  E-value=1.2e-10  Score=99.36  Aligned_cols=65  Identities=48%  Similarity=0.588  Sum_probs=56.6

Q ss_pred             ccCcccccCc-ccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        133 IYGNKFEDEN-FVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       133 ~~~~~~~~e~-~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +|+..+++|. ..++|+++|+|+||++++++++|||||++.+.    ++|++||+|..+++++++|.+..
T Consensus        65 ~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~  134 (159)
T cd01923          65 IWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVP  134 (159)
T ss_pred             ccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCC
Confidence            4567788884 46789999999999999999999999999886    89999999999999988777664

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>KOG0415|consensus

Probab=99.01  E-value=1.5e-10  Score=108.08  Aligned_cols=55  Identities=36%  Similarity=0.405  Sum_probs=49.9

Q ss_pred             ccccC-cccccccCCCceeccccCCCCCCCceeEEeeec-----cceeeeEEEEEEeeeee
Q psy13279        137 KFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI-----NKHYYYYYYYIFLTRFT  191 (287)
Q Consensus       137 ~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~-----g~~~vfG~v~~g~~vi~  191 (287)
                      .+.+| .+.++|.+.|+|||++.+.+-+||||||+|++.     ++|++||+|.++++++.
T Consensus        77 ffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~  137 (479)
T KOG0415|consen   77 FFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLT  137 (479)
T ss_pred             hhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHH
Confidence            46667 468999999999999999999999999999998     89999999999998873

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=98.95  E-value=4.5e-10  Score=98.57  Aligned_cols=61  Identities=15%  Similarity=0.071  Sum_probs=49.8

Q ss_pred             ccccCcccccccCCCceeccccC-CCCCCCceeEEeeec---------cceeeeEEEEEEeeeeeeeeecc
Q psy13279        137 KFEDENFVLKHTGPGVLSMANSG-PNTNGSQFFLCTTSI---------NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       137 ~~~~e~~~~~h~~~G~l~ma~~~-~~s~~SqFfI~l~~~---------g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      ++++|....+|+++|+|+||+.+ +++++|||||++.+.         ++|++||+|.++++++++|.+..
T Consensus        96 ~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~  166 (190)
T PRK10903         96 PIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP  166 (190)
T ss_pred             cccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCC
Confidence            35556545567779999999876 999999999999875         28999999999999997776654

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=98.92  E-value=4.7e-10  Score=96.34  Aligned_cols=61  Identities=31%  Similarity=0.431  Sum_probs=51.6

Q ss_pred             cccccCc-ccccccCCCceeccccCCCCCCCceeEEeee-c----cceeeeEEEEEEeeeeeeeeec
Q psy13279        136 NKFEDEN-FVLKHTGPGVLSMANSGPNTNGSQFFLCTTS-I----NKHYYYYYYYIFLTRFTQMCQG  196 (287)
Q Consensus       136 ~~~~~e~-~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~-~----g~~~vfG~v~~g~~vi~~m~Qg  196 (287)
                      ..+++|. ..++|+++|+|+||+.++++++|||||++.+ .    ++|++||+|+.+++++.+|.+.
T Consensus        73 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~  139 (166)
T cd01921          73 RFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDA  139 (166)
T ss_pred             cccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcC
Confidence            3456664 4788999999999999999999999999975 2    8999999999999998776554

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=98.75  E-value=1e-08  Score=88.57  Aligned_cols=52  Identities=40%  Similarity=0.660  Sum_probs=45.3

Q ss_pred             ccCcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEE
Q psy13279        133 IYGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYY  184 (287)
Q Consensus       133 ~~~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~  184 (287)
                      +|+..+++|.. .++|+++|+|+||+.++++++|||||++.+.    ++|++||+|.
T Consensus        71 ~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~  127 (171)
T cd01925          71 IYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVT  127 (171)
T ss_pred             cCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEE
Confidence            45667777854 5778999999999999999999999999886    8999999997

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=98.69  E-value=6e-09  Score=88.52  Aligned_cols=60  Identities=15%  Similarity=0.102  Sum_probs=48.3

Q ss_pred             cccCcccccccCCCceeccccC-CCCCCCceeEEeeec----c-----ceeeeEEEEEEeeeeeeeeecc
Q psy13279        138 FEDENFVLKHTGPGVLSMANSG-PNTNGSQFFLCTTSI----N-----KHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       138 ~~~e~~~~~h~~~G~l~ma~~~-~~s~~SqFfI~l~~~----g-----~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +++|....+|+++|+||||+.+ +++++|||||++.+.    +     +|++||+|..+++++++|.+..
T Consensus        66 ~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~  135 (155)
T cd01920          66 IKNEAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVE  135 (155)
T ss_pred             ccCcccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCC
Confidence            3445444556779999999976 899999999999885    2     6899999999999987776553

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=98.58  E-value=1.9e-08  Score=86.34  Aligned_cols=58  Identities=16%  Similarity=0.106  Sum_probs=46.1

Q ss_pred             ccCcccccccCCCceeccccC-CCCCCCceeEEeeec------------cceeeeEEEEEEeeeeeeeeec
Q psy13279        139 EDENFVLKHTGPGVLSMANSG-PNTNGSQFFLCTTSI------------NKHYYYYYYYIFLTRFTQMCQG  196 (287)
Q Consensus       139 ~~e~~~~~h~~~G~l~ma~~~-~~s~~SqFfI~l~~~------------g~~~vfG~v~~g~~vi~~m~Qg  196 (287)
                      ++|....+++.+|+||||+.+ |++++|||||++.+.            ++|++||+|.++++++++|.+.
T Consensus        69 ~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~  139 (164)
T PRK10791         69 KNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGV  139 (164)
T ss_pred             CCcccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcC
Confidence            344333344569999999875 999999999999874            2699999999999999777654

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=98.57  E-value=2.5e-08  Score=83.24  Aligned_cols=62  Identities=47%  Similarity=0.662  Sum_probs=52.4

Q ss_pred             ccccCccccc-ccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        137 KFEDENFVLK-HTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       137 ~~~~e~~~~~-h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      .+++|..... |+++|+|+|++.++++.+|||||++.+.    +++++||+|..+++++++|.....
T Consensus        66 ~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~  132 (146)
T cd00317          66 KFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDT  132 (146)
T ss_pred             ccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCC
Confidence            5667765444 8889999999999999999999999765    799999999999999977776653

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=98.26  E-value=3.6e-07  Score=76.85  Aligned_cols=60  Identities=32%  Similarity=0.402  Sum_probs=49.9

Q ss_pred             ccccCcc-cccccCCCceeccccC--CCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeec
Q psy13279        137 KFEDENF-VLKHTGPGVLSMANSG--PNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQG  196 (287)
Q Consensus       137 ~~~~e~~-~~~h~~~G~l~ma~~~--~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~Qg  196 (287)
                      ++++|.. .++++++|+|+|++.+  +++.+|||||+|.+.    +++++||+|..+++++++|...
T Consensus        72 ~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~  138 (155)
T PF00160_consen   72 PIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAG  138 (155)
T ss_dssp             CBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTS
T ss_pred             ccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCC
Confidence            4777863 4444479999999875  889999999999985    7899999999999998777663

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>PRK00969 hypothetical protein; Provisional

Probab=94.69  E-value=0.26  Score=49.16  Aligned_cols=45  Identities=9%  Similarity=0.207  Sum_probs=31.6

Q ss_pred             cCchhhhhhhhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeeccccc
Q psy13279        224 HTGPGVLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWETR  271 (287)
Q Consensus       224 h~~~G~lsMA~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv~  271 (287)
                      ...+|++.+-+.|..+  -.-||...+-+ -.--|||+|+|+.||+-.
T Consensus       257 ~R~~GtVTVRt~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi  301 (508)
T PRK00969        257 PRRRGTVTVRTAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELI  301 (508)
T ss_pred             ccccceEEEEeeccCc--eeEEEECCCCC-CCccceeEEEEecceeee
Confidence            3457888887766544  35788774433 223799999999999953

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=92.98  E-value=0.89  Score=45.35  Aligned_cols=54  Identities=17%  Similarity=0.305  Sum_probs=35.2

Q ss_pred             CCcccccccccccCchhhhhhhhcCCCCCCceEEEEcCCC-CCCCCCccEEEEeeeccccc
Q psy13279        212 GNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ-EICVKLLDLLASLDAGWETR  271 (287)
Q Consensus       212 g~~~~~E~~~~~h~~~G~lsMA~~~p~s~~SQFFIt~g~~-~~LD~~ytVfG~VieG~dv~  271 (287)
                      +...+.|+.  ....+|++.+-+.|..+  -.-||...+- +.|  -|||+|+|+.||+-.
T Consensus       244 g~~~p~En~--~~R~rGtVTVRn~G~G~--G~VYIYredr~ss~--sHtvVG~V~~GiELi  298 (503)
T TIGR03268       244 GLDKPEENI--EKRRRGAVTVRNSGVGE--GRVYIYREDRPSSL--SHNVVGHVTRGIELI  298 (503)
T ss_pred             CccCCcccc--CcccceeEEEEeeccCc--eeEEEEcCCCCCCc--ccceeEEEecceeee
Confidence            333444433  23457888887766544  3578877443 344  799999999999953

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	287
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		5e-32
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		2e-26
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		5e-32
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		2e-26
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		5e-32
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		5e-26
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		5e-32
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		2e-26
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		5e-32
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		5e-26
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		5e-32
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		2e-26
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		6e-32
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		2e-26
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		6e-32
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		2e-26
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		6e-32
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		2e-26
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		9e-32
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		7e-26
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		1e-31
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		6e-26
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		1e-31
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		3e-26
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		1e-31
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		2e-26
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		6e-31
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		5e-25
1dyw_A	173	Biochemical And Structural Characterization Of A Di		1e-27
1dyw_A	173	Biochemical And Structural Characterization Of A Di		4e-22
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		4e-27
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		8e-25
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		5e-27
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		1e-24
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		1e-26
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		2e-26
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		8e-19
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		5e-25
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		3e-23
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		1e-24
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		2e-24
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		2e-24
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		2e-24
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		2e-24
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		3e-24
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		1e-17
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		4e-24
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		4e-20
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		5e-24
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		5e-20
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		1e-23
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		3e-16
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		2e-21
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		4e-20
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		1e-17
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		8e-20
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		1e-17
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		3e-19
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		5e-19
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		8e-19
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		4e-18
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		3e-18
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		3e-18
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		3e-18
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		4e-18
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		4e-18
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		4e-18
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		4e-18
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		5e-18
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		2e-17
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		4e-17
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		2e-17
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		6e-16
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		2e-17
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		3e-17
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		3e-17
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		3e-17
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		9e-17
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		9e-17
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		1e-16
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		1e-16
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		3e-16
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		1e-16
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		3e-16
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		7e-16
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		1e-15
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		3e-15
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		3e-14
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		5e-14
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		5e-14
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		2e-13
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-13
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		4e-13
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-13
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		5e-13
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		3e-12
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		6e-12
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		1e-11
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		5e-11
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		1e-11
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		5e-11
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		1e-11
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		6e-11
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		5e-11
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		5e-11
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		7e-11
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		7e-11
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		2e-09
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		8e-09
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		7e-08
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		3e-07
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		9e-06
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		1e-05
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		1e-05
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		1e-05
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		4e-04

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  134 bits (338), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 28  DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 80
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 81  -------------CQGGDFTRH-------------------------------------- 89
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 90  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 136

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 80  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 139

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 55/58 (94%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 8   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 60
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 61  -------------CQGGDFTRH-------------------------------------- 69
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 70  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 116

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 55/58 (94%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K
Sbjct: 60  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 117

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 17  DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 69
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 70  -------------CQGGDFTRH-------------------------------------- 78
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 79  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 125

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 69  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 128

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 8   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 60
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 61  -------------CQGGDFTRH-------------------------------------- 69
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 70  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 116

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 60  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 119

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  133 bits (335), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 77/172 (44%), Positives = 91/172 (52%), Gaps = 62/172 (36%)
Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
            DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+      
Sbjct: 12  FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------ 65
Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                           GG+ TRH                                     
Sbjct: 66  --------------CQGGDFTRH------------------------------------- 74
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 75  -----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 121

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 55/58 (94%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K
Sbjct: 65  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 122

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 90/171 (52%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GGN T H                                      
Sbjct: 62  -------------CQGGNFTHH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/60 (86%), Positives = 57/60 (95%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGG+FT+HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61  MCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------- 61
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+L+MAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTA 117

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/60 (86%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+L+MAN+GPNTNGSQFF+CT K E
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTE 120

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 91/171 (53%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FH+IIP F+       
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFM------- 61
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------CQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 71  ----NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 89/172 (51%), Gaps = 62/172 (36%)
Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
            DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F       
Sbjct: 7   FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFX------ 60
Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                           GG+ TRH                                     
Sbjct: 61  --------------CQGGDFTRH------------------------------------- 69
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                NGTGGKSIYG KFEDENF+LKHTGPG+LS AN+GPNTNGSQFF+CT 
Sbjct: 70  -----NGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTA 116

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 54/59 (91%)
Query: 194 CQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           CQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LS AN+GPNTNGSQFF+CT K E
Sbjct: 61  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTE 119

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 85/171 (49%), Gaps = 55/171 (32%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI IG +  GRI ++L  D+VP+TA NFR LCT E G G  G                 +
Sbjct: 9   DITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSG-----------------K 51
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
            L  + SKF                                      H    N M QGGD
Sbjct: 52  PLHFKGSKF--------------------------------------HRIIPNFMIQGGD 73
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
           FT  NGTGG+SIYG KF DENF  KHTGPGVLSMAN+GPNTNGSQFFLCT 
Sbjct: 74  FTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 51/60 (85%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGDFT  NGTGG+SIYG KF DENF  KHTGPGVLSMAN+GPNTNGSQFFLCT K E
Sbjct: 68  MIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTE 127

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 83/169 (49%), Gaps = 62/169 (36%)
Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
           MDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F+      
Sbjct: 16  MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC----- 70
Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                                                      G F +H+    K   G 
Sbjct: 71  -----------------------------------------QGGDFTNHNGTGGKSIYGK 89
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
            F + N                F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct: 90  KFDDEN----------------FILKHTGPGLLSMANSGPNTNGSQFFL 122

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/60 (86%), Positives = 55/60 (91%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQFFL   K +
Sbjct: 69  MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTD 128

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 83/169 (49%), Gaps = 62/169 (36%)
Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
           MDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F+      
Sbjct: 8   MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC----- 62
Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                                                      G F +H+    K   G 
Sbjct: 63  -----------------------------------------QGGDFTNHNGTGGKSIYGK 81
Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
            F + N                F+LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct: 82  KFDDEN----------------FILKHTGPGLLSMANSGPNTNGSQFFL 114

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/60 (86%), Positives = 55/60 (91%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQFFL   K +
Sbjct: 61  MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTD 120

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 57/60 (95%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFT+HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 60  MCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 119

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 87/168 (51%), Gaps = 62/168 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           D+    + +GRIT++L  ++VPRTAENFR LCT EKGFG++ S FHR+IPDFV       
Sbjct: 12  DVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFV------- 64
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ T+H                                      
Sbjct: 65  -------------CQGGDITKH-------------------------------------- 73
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
               +GTGG+SIYG+KFEDENF +KHTGPG+LSMAN G NTN SQF +
Sbjct: 74  ----DGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVI 117

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 49/60 (81%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           +CQGGD T H+GTGG+SIYG+KFEDENF +KHTGPG+LSMAN G NTN SQF +   K E
Sbjct: 64  VCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAE 123

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 79/168 (47%), Gaps = 62/168 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DIKIG +  GRI   LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F        
Sbjct: 18  DIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXC------ 71
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                                                     G F +H+    K   G  
Sbjct: 72  ----------------------------------------QGGDFTNHNGTGGKSIYGKK 91
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
           F + N                F+LKHTGPG+LS ANSGPNTNGSQFFL
Sbjct: 92  FDDEN----------------FILKHTGPGLLSXANSGPNTNGSQFFL 123

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 53/59 (89%)
Query: 194 CQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           CQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LS ANSGPNTNGSQFFL   K +
Sbjct: 71  CQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTD 129

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 56/60 (93%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGG+FT+ NGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 61  MCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 120

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 54/60 (90%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT K +
Sbjct: 61  MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 120

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 54/60 (90%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT K +
Sbjct: 62  MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 121

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 54/60 (90%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT K +
Sbjct: 61  MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 120

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 54/60 (90%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT K +
Sbjct: 60  MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 119

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 82/168 (48%), Gaps = 62/168 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           D+   ++ +GRI ++L  D+VP+TA+NFR LC   KG GY+GS+FHRIIP F+       
Sbjct: 33  DVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFM------- 85
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ T H                                      
Sbjct: 86  -------------VQGGDYTAH-------------------------------------- 94
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
               NGTGG+SIYG KF DENF LKHT  G+LSMAN G +TNGSQFF+
Sbjct: 95  ----NGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFI 138

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 47/60 (78%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGD+T HNGTGG+SIYG KF DENF LKHT  G+LSMAN G +TNGSQFF+   K +
Sbjct: 85  MVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQ 144

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 82/171 (47%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           +I I  +  GRI  +L  + VP+TA+NFR L T + GFGY+ S FHR+IP F+       
Sbjct: 8   NISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFM------- 60
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 61  -------------LQGGDFTRH-------------------------------------- 69
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T 
Sbjct: 70  ----NGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 48/57 (84%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
           M QGGDFT HNGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T 
Sbjct: 60  MLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 82/171 (47%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           +I I  +  GRI  +L  + VP+TA+NFR L T + GFGY+ S FHR+IP F+       
Sbjct: 9   NISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFM------- 61
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TRH                                      
Sbjct: 62  -------------LQGGDFTRH-------------------------------------- 70
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               NGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T 
Sbjct: 71  ----NGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 48/57 (84%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
           M QGGDFT HNGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T 
Sbjct: 61  MLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 80/175 (45%), Gaps = 58/175 (33%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           DI I  +  GRI ++L  D VP+TAENFR LCT EKG G  G                  
Sbjct: 13  DISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGK----------------- 55
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                                       P+ Y               H    N M QGGD
Sbjct: 56  ----------------------------PLHYKSSVF----------HRVIPNFMIQGGD 77
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLK---HTGPGVLSMANSGPNTNGSQFFLCTTS 173
           FT  NGTGG+SIYG  F DE+F  K   HTG G LSMAN+GPNTNGSQFF+CT +
Sbjct: 78  FTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAA 132

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 46/60 (76%), Gaps = 3/60 (5%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILK---HTGPGVLSMANSGPNTNGSQFFLCTT 249
           M QGGDFT  NGTGG+SIYG  F DE+F  K   HTG G LSMAN+GPNTNGSQFF+CT 
Sbjct: 72  MIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTA 131

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/58 (81%), Positives = 51/58 (87%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           MCQGGDF   +GTGGKSIYG KF+DENF L+H G GVLSMANSGPNTNGSQFF+CTTK
Sbjct: 68  MCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTK 125

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 76/171 (44%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           D++IG + +GRI I L    VP+TA NF  L    KG GY G                  
Sbjct: 12  DMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPG------------------ 53
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
              S+F +   DF                                         M QGGD
Sbjct: 54  ---SKFHRVIADF-----------------------------------------MIQGGD 69
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
           FT  +GTGG+SIYG KF DENF LKH G G LSMAN+G +TNGSQFF+ T 
Sbjct: 70  FTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 46/58 (79%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGDFT  +GTGG+SIYG KF DENF LKH G G LSMAN+G +TNGSQFF+ T K
Sbjct: 64  MIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVK 121

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 74/171 (43%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           D++   Q +GR+  +L  D+VP+TAENFR LCT EKGFGY GS FHR+IPDF+       
Sbjct: 7   DVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFML------ 60
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                                                     G F + +    K   GG 
Sbjct: 61  ----------------------------------------QGGDFTAGNGTGGKSIYGGK 80
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
           F + N                F   H  PG+LSMAN+GPNTNGSQFF+ T 
Sbjct: 81  FPDEN----------------FKKHHDRPGLLSMANAGPNTNGSQFFITTV 115

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/57 (73%), Positives = 45/57 (78%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
           M QGGDFT  NGTGGKSIYG KF DENF   H  PG+LSMAN+GPNTNGSQFF+ T 
Sbjct: 59  MLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTV 115

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 108 SHSSRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGS 165
           SH  R+  + M QGGDFT  NGTGGKSIYG KF DENF LKH  PG+LSMAN+GPNTNGS
Sbjct: 49  SHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGS 108
Query: 166 QFFLCTT 172
           QFF+ T 
Sbjct: 109 QFFITTV 115

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 47/57 (82%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
           M QGGDFT  NGTGGKSIYG KF DENF LKH  PG+LSMAN+GPNTNGSQFF+ T 
Sbjct: 59  MLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 87  IPLPMKYIRP-CLDCGSKGTFQSHSSRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDENF 143
           +P   K  R  C     +G  +S   RI  N M QGGDFT  NGTGG+SIYG+KF DENF
Sbjct: 33  VPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENF 92
Query: 144 VLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
             KH   G+LSMAN+GPNTNGSQFF+ T 
Sbjct: 93  SRKHDKKGILSMANAGPNTNGSQFFITTA 121

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 46/57 (80%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
           M QGGDFT  NGTGG+SIYG+KF DENF  KH   G+LSMAN+GPNTNGSQFF+ T 
Sbjct: 65  MIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTA 121

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGDFT  +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T K
Sbjct: 70  MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 127

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 77/172 (44%), Gaps = 62/172 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           D++IG +++GR+ I L    VP+T +N                        FV+  T  +
Sbjct: 18  DLRIGDEDIGRVVIGLFGKTVPKTVDN------------------------FVALATGEK 53
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
               + SKF        +R    F                              M QGGD
Sbjct: 54  GFGYKDSKF--------HRVIKDF------------------------------MIQGGD 75
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTS 173
           FT  +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T  
Sbjct: 76  FTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 127

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGDFT  +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T K
Sbjct: 70  MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 127

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGDFT  +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T K
Sbjct: 63  MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 120

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGDFT  +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T K
Sbjct: 73  MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 130

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 46/57 (80%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
           M QGGDF+N NGTGG+SIYG KFEDENF  KH   G+LSMAN+G NTNGSQFF+ T 
Sbjct: 81  MIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTV 137

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 46/57 (80%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
           M QGGDF+N NGTGG+SIYG KFEDENF  KH   G+LSMAN+G NTNGSQFF+ T 
Sbjct: 81  MIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTV 137

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 47/60 (78%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGDF NHNG+G  SIYG KF+DENF +KH   G+LSMANSGPNTNG QFF+ T K E
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 181

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 48/64 (75%)
Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFF 168
           H    N M QGGDFT  +GTGG+SIYG  F+DE FV+KH  P V+SMAN GPNTNGSQFF
Sbjct: 65  HRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFF 124
Query: 169 LCTT 172
           + TT
Sbjct: 125 ITTT 128

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 46/57 (80%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
           M QGGDFT  +GTGG+SIYG  F+DE F++KH  P V+SMAN GPNTNGSQFF+ TT
Sbjct: 72  MIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTT 128

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 75/171 (43%), Gaps = 62/171 (36%)
Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
           D++IG ++VGRI I L   +VP+T EN                        FV+  T  +
Sbjct: 21  DVRIGDKDVGRIVIGLFGKVVPKTVEN------------------------FVALATGEK 56
Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
               + SKF        +R    F                              M QGGD
Sbjct: 57  GYGYKGSKF--------HRVIKDF------------------------------MIQGGD 78
Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
            T  +GTGG SIYG  F DENF LKH G G +SMAN+GP+TNGSQFF+  T
Sbjct: 79  ITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 129

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 44/58 (75%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGD T  +GTGG SIYG  F DENF LKH G G +SMAN+GP+TNGSQFF+  TK
Sbjct: 73  MIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTK 130

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 45/54 (83%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
           MCQGGD TN NG+GG+SIYG  F DENF +KH  PG+LSMAN+GPNTN SQFF+
Sbjct: 67  MCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 45/54 (83%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFL 246
           MCQGGD TN NG+GG+SIYG  F DENF +KH  PG+LSMAN+GPNTN SQFF+
Sbjct: 67  MCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 46/57 (80%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
           M QGGDFT  +GTGG+SIYG+KF DENFV  H  P +LSMAN+GPNTNGSQFF+ T 
Sbjct: 84  MIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGDFT  +GTGG+SIYG+KF DENF+  H  P +LSMAN+GPNTNGSQFF+ T    
Sbjct: 84  MIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCP 143
Query: 253 ICVKLLDLLASLDAGWE-TRGVWKCHQWNG 281
                  +   +  G E  + + KC   NG
Sbjct: 144 WLDGKHVVFGKVLEGMEVVKSIEKCGSQNG 173

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 45/58 (77%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGDFT  +GTGG SIYG  F DENF LKH G G +SMAN+GP+TNGSQFF+  TK
Sbjct: 65  MIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTK 122

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 44/54 (81%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFL 169
           MCQGGD TN NG+GG+SIYG  F DENF +KH  PG+LSMAN+GPNTN SQF +
Sbjct: 67  MCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLI 120

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 44/54 (81%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFL 246
           MCQGGD TN NG+GG+SIYG  F DENF +KH  PG+LSMAN+GPNTN SQF +
Sbjct: 67  MCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLI 120

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFF 168
           H    N M QGGDFTN +GTGGKSIYG KF DEN  +KH   G LSMAN+GPNTNGSQFF
Sbjct: 62  HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 169 LCTT 172
           + T 
Sbjct: 121 ITTA 124

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
           M QGGDFTN +GTGGKSIYG KF DEN  +KH   G LSMAN+GPNTNGSQFF+ T 
Sbjct: 69  MIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFF 168
           H    N M QGGDFTN +GTGGKSIYG KF DEN  +KH   G LSMAN+GPNTNGSQFF
Sbjct: 62  HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 169 LCTT 172
           + T 
Sbjct: 121 ITTA 124

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
           M QGGDFTN +GTGGKSIYG KF DEN  +KH   G LSMAN+GPNTNGSQFF+ T 
Sbjct: 69  MIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 52/72 (72%), Gaps = 2/72 (2%)
Query: 101 GSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP 160
           G KG+      R N M QGGDFTN +GTGGKSIYG +F+DEN  +KH   G +SMAN+GP
Sbjct: 49  GYKGSIFHRVIR-NFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGP 106
Query: 161 NTNGSQFFLCTT 172
           N+NGSQFF+ T 
Sbjct: 107 NSNGSQFFVTTA 118

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
           M QGGDFTN +GTGGKSIYG +F+DEN  +KH   G +SMAN+GPN+NGSQFF+ T 
Sbjct: 63  MIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTA 118

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGDF N +GTG  SIY   F DENF L+H+ PG+LSMANSGP+TNG QFF+  +K
Sbjct: 73  MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSK 130

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 45/63 (71%)
Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFF 168
           H    N M QGGDF+  NG GG+SIYG  F+DENF+LKH    +LSMAN G +TNGSQFF
Sbjct: 78  HRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFF 137
Query: 169 LCT 171
           + T
Sbjct: 138 ITT 140

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 43/56 (76%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 248
           M QGGDF+  NG GG+SIYG  F+DENFILKH    +LSMAN G +TNGSQFF+ T
Sbjct: 85  MIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITT 140

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 12/87 (13%)
Query: 97  CLDCGSKGTFQS------------HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFV 144
           CL  G KGT +S            H    + M QGGDF+  NG GG+SIYG  FEDE+F 
Sbjct: 61  CLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFA 120
Query: 145 LKHTGPGVLSMANSGPNTNGSQFFLCT 171
           +KH    +LSMAN G +TNGSQFF+ T
Sbjct: 121 VKHNAAFLLSMANRGKDTNGSQFFITT 147

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 42/56 (75%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 248
           M QGGDF+  NG GG+SIYG  FEDE+F +KH    +LSMAN G +TNGSQFF+ T
Sbjct: 92  MVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITT 147

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 12/87 (13%)
Query: 97  CLDCGSKGTFQS------------HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFV 144
           CL  G KGT +S            H    + M QGGDF+  NG GG+SIYG  FEDE+F 
Sbjct: 44  CLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFA 103
Query: 145 LKHTGPGVLSMANSGPNTNGSQFFLCT 171
           +KH    +LSMAN G +TNGSQFF+ T
Sbjct: 104 VKHNKEFLLSMANRGKDTNGSQFFITT 130

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 42/56 (75%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 248
           M QGGDF+  NG GG+SIYG  FEDE+F +KH    +LSMAN G +TNGSQFF+ T
Sbjct: 75  MVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 12/87 (13%)
Query: 97  CLDCGSKGTFQS------------HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFV 144
           CL  G KGT +S            H    + M QGGDF+  NG GG+SIYG  FEDE+F 
Sbjct: 44  CLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFA 103
Query: 145 LKHTGPGVLSMANSGPNTNGSQFFLCT 171
           +KH    +LSMAN G +TNGSQFF+ T
Sbjct: 104 VKHNKEFLLSMANRGKDTNGSQFFITT 130

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 42/56 (75%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 248
           M QGGDF+  NG GG+SIYG  FEDE+F +KH    +LSMAN G +TNGSQFF+ T
Sbjct: 75  MVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQF 167
           H    N + QGGD T   G GGKSIYG  FEDE N  LKHTG G+LSM+N+GPNTN SQF
Sbjct: 81  HRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQF 139
Query: 168 FL 169
           F+
Sbjct: 140 FI 141

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 246
           + QGGD T   G GGKSIYG  FEDE N  LKHTG G+LSM+N+GPNTN SQFF+
Sbjct: 88  VIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFI 141

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 53/94 (56%), Gaps = 16/94 (17%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           M QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQFF+     
Sbjct: 61  MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 175 N----KHXXXXXXXIFLTRFTQMCQGGDFTNHNG 204
                KH          T F ++CQG    N  G
Sbjct: 120 QWLDGKH----------TIFGRVCQGIGMVNRVG 143

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           M QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQFF+     
Sbjct: 61  MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 252 E 252
           +
Sbjct: 120 Q 120

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 53/94 (56%), Gaps = 16/94 (17%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           M QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQFF+     
Sbjct: 61  MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 175 N----KHXXXXXXXIFLTRFTQMCQGGDFTNHNG 204
                KH          T F ++CQG    N  G
Sbjct: 120 QWLDGKH----------TIFGRVCQGIGMVNRVG 143

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 246
           M QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQFF+
Sbjct: 61  MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 53/94 (56%), Gaps = 16/94 (17%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           M QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQFF+     
Sbjct: 61  MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 175 N----KHXXXXXXXIFLTRFTQMCQGGDFTNHNG 204
                KH          T F ++CQG    N  G
Sbjct: 120 QWLDGKH----------TIFGRVCQGIGMVNRVG 143

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           M QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQFF+     
Sbjct: 61  MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 252 E 252
           +
Sbjct: 120 Q 120

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 51/81 (62%), Gaps = 9/81 (11%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           M Q GD T   G GG SI+G KFEDE +  LKH   GV+SMAN+GPNTNGSQFF+   KQ
Sbjct: 56  MVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQ 114
Query: 252 E-------ICVKLLDLLASLD 265
                   +  K++D L +LD
Sbjct: 115 PHLDMKYTVFGKVIDGLETLD 135

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 51/81 (62%), Gaps = 9/81 (11%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           M Q GD T   G GG SI+G KFEDE +  LKH   GV+SMAN+GPNTNGSQFF+   KQ
Sbjct: 50  MVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQ 108
Query: 252 E-------ICVKLLDLLASLD 265
                   +  K++D L +LD
Sbjct: 109 PHLDMKYTVFGKVIDGLETLD 129

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 44/58 (75%), Gaps = 2/58 (3%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFV-LKHTGPGVLSMANSGPNTNGSQFFLCTT 172
           M Q GD +  +GTGG+SI+GN+FEDE F  L H+ P ++SMAN GPNTNGSQFF+ T 
Sbjct: 55  MVQTGDPSG-DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTV 111

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 44/58 (75%), Gaps = 2/58 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFI-LKHTGPGVLSMANSGPNTNGSQFFLCTT 249
           M Q GD +  +GTGG+SI+GN+FEDE F  L H+ P ++SMAN GPNTNGSQFF+ T 
Sbjct: 55  MVQTGDPSG-DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTV 111

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 85  FPIPLPMKYIRPCLDCGSKGTFQSHS-SRINK--MCQGGDFTNHNGTGGKSIYGNKFEDE 141
           FP+  P      C+     G +  H+  RI K  M Q GD T   G GG+SI+G +FEDE
Sbjct: 38  FPVECPKTVENFCVHS-RNGYYNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDE 95
Query: 142 -NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKH 177
            +  L+H  P  LSMAN+G NTNGSQFF+         NKH
Sbjct: 96  FHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKH 136

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTT 249
           M Q GD T   G GG+SI+G +FEDE +  L+H  P  LSMAN+G NTNGSQFF+   
Sbjct: 71  MIQTGDPTG-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVV 127

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 6/64 (9%)
Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFV-LKHTGPGVLSMANSG----PNTNGSQFFLC 170
           + QGGD T   G GG+SIYG  F+DE +  LK+   G+LSMA+ G    PNTNGSQFF+ 
Sbjct: 66  IIQGGDPTG-TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFIT 124
Query: 171 TTSI 174
            +S+
Sbjct: 125 YSSL 128

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFI-LKHTGPGVLSMANSG----PNTNGSQFFLC 247
           + QGGD T   G GG+SIYG  F+DE +  LK+   G+LSMA+ G    PNTNGSQFF+ 
Sbjct: 66  IIQGGDPTG-TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFIT 124
Query: 248 TTKQEICVKLLDLLASLDAGWET 270
            +          +   L  G+ET
Sbjct: 125 YSSLPQLNGEYVIFGKLIDGFET 147

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 93  YIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPG 151
           +I+ CL+     T   H      + QGGD T   G+GG+SIYG  F+DE +  L+    G
Sbjct: 52  FIQLCLEAYYDNTI-FHRVVPGFIVQGGDPTG-TGSGGESIYGAPFKDEFHSRLRFNRRG 109
Query: 152 VLSMANSGPNTNGSQFFL 169
           +++MAN+G + NGSQFF 
Sbjct: 110 LVAMANAGSHDNGSQFFF 127

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           + QGGD T   G+GG+SIYG  F+DE +  L+    G+++MAN+G + NGSQFF    + 
Sbjct: 74  IVQGGDPTG-TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRA 132
Query: 252 E 252
           +
Sbjct: 133 D 133

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 131 KSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFL 169
           +S +G  F+DE    L HTG G+LSMANSGPN+N SQFF+
Sbjct: 83  ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFI 122

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 208 KSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 246
           +S +G  F+DE    L HTG G+LSMANSGPN+N SQFF+
Sbjct: 83  ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFI 122

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGD T     G    + ++F  E   L+   P +L+MAN+GP TNGSQFF+   K
Sbjct: 88  MIQGGDPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGK 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	3e-58
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	3e-45
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	5e-58
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	5e-45
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	6e-57
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	3e-45
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	9e-57
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	3e-45
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	4e-56
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	3e-45
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	5e-56
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	7e-45
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	6e-56
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	6e-45
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	9e-56
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	5e-45
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	3e-54
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	3e-45
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	4e-54
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-45
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	7e-54
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	4e-42
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	3e-53
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	3e-37
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-45
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	4e-44
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-24
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	2e-44
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	9e-44
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	5e-25
1z81_A	229	Cyclophilin; structural genomics, structural genom	6e-44
1z81_A	229	Cyclophilin; structural genomics, structural genom	5e-43
1z81_A	229	Cyclophilin; structural genomics, structural genom	2e-24
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	2e-43
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	7e-43
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	4e-25
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	2e-43
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	7e-43
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	3e-25
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	2e-43
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-42
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	3e-25
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-40
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-39
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	9e-25
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	6e-29
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	1e-28
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	1e-10
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	1e-28
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	2e-28
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	5e-11
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	2e-28
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	4e-28
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	7e-11
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	5e-28
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	8e-28
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	2e-10
2b71_A	196	Cyclophilin-like protein; structural genomics, str	2e-27
2b71_A	196	Cyclophilin-like protein; structural genomics, str	4e-27
2b71_A	196	Cyclophilin-like protein; structural genomics, str	3e-10
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	4e-25
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	1e-24
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	6e-09
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	3e-24
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	4e-24
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	2e-08
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	4e-24
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	5e-24
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	4e-09
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	2e-23
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	2e-23
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	3e-09
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	8e-22
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	9e-22
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	2e-10
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	6e-20
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	1e-19
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	1e-07
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	2e-17
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	4e-17
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	4e-08
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	3e-16
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	2e-10
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	2e-09
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	2e-09
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	6e-08
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	3e-09
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	3e-09
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	7e-08
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	4e-08
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	4e-08
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	7e-08

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  183 bits (466), Expect = 3e-58
 Identities = 84/172 (48%), Positives = 94/172 (54%), Gaps = 62/172 (36%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
           MDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP    FM + 
Sbjct: 16  MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQ---FMCQ- 71

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                           GG+ T H                    GT               
Sbjct: 72  ----------------GGDFTNH-------------------NGT--------------- 81

Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                   GGKSIYG KF+DENF+LKHTGPG+LSMANSGPNTNGSQFFL   
Sbjct: 82  --------GGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 125

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  149 bits (380), Expect = 3e-45
 Identities = 52/60 (86%), Positives = 55/60 (91%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQFFL   K +
Sbjct: 69  MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTD 128

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  183 bits (466), Expect = 5e-58
 Identities = 65/172 (37%), Positives = 82/172 (47%), Gaps = 62/172 (36%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
            D+   ++ +GRI ++L  D+VP+TA+NFR LC   KG GY+GS+FHRIIP    FM + 
Sbjct: 32  FDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPG---FMVQ- 87

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                           GG+ T H                    GT               
Sbjct: 88  ----------------GGDYTAH-------------------NGT--------------- 97

Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                   GG+SIYG KF DENF LKHT  G+LSMAN G +TNGSQFF+   
Sbjct: 98  --------GGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLG 141

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  150 bits (380), Expect = 5e-45
 Identities = 41/60 (68%), Positives = 47/60 (78%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGD+T HNGTGG+SIYG KF DENF LKHT  G+LSMAN G +TNGSQFF+   K +
Sbjct: 85  MVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQ 144

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  180 bits (459), Expect = 6e-57
 Identities = 64/172 (37%), Positives = 80/172 (46%), Gaps = 62/172 (36%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
            D++IG ++VGR+   L    VP+T +NF  L T EKGFGY+ S FHR+I DF+      
Sbjct: 20  FDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM------ 73

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                           GG+ TR                     GT             GG
Sbjct: 74  --------------IQGGDFTRGD-------------------GT-------------GG 87

Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                     KSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T 
Sbjct: 88  ----------KSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 129

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  150 bits (381), Expect = 3e-45
 Identities = 41/60 (68%), Positives = 47/60 (78%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGDFT  +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T K  
Sbjct: 73  MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 132

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  179 bits (456), Expect = 9e-57
 Identities = 75/172 (43%), Positives = 88/172 (51%), Gaps = 62/172 (36%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
            DI+IG  + GRI ++LR D+VPRTAENFR LCT E+GFGY    FHR+IP    FM + 
Sbjct: 15  FDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQ---FMCQ- 70

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                           GG+  +                     GT             GG
Sbjct: 71  ----------------GGDFVKG-------------------DGT-------------GG 82

Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                     KSIYG KF+DENF L+H G GVLSMANSGPNTNGSQFF+CTT
Sbjct: 83  ----------KSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTT 124

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  149 bits (380), Expect = 3e-45
 Identities = 47/60 (78%), Positives = 52/60 (86%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDF   +GTGGKSIYG KF+DENF L+H G GVLSMANSGPNTNGSQFF+CTTK +
Sbjct: 68  MCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCD 127

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  177 bits (451), Expect = 4e-56
 Identities = 72/172 (41%), Positives = 92/172 (53%), Gaps = 62/172 (36%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
           +D+    + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP    FM + 
Sbjct: 8   LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPS---FMCQ- 63

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                            G+ T H+                   GT             GG
Sbjct: 64  ----------------AGDFTNHN-------------------GT-------------GG 75

Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                     KSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT 
Sbjct: 76  ----------KSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTI 117

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  149 bits (378), Expect = 3e-45
 Identities = 49/60 (81%), Positives = 54/60 (90%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT K +
Sbjct: 61  MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 120

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  177 bits (452), Expect = 5e-56
 Identities = 76/172 (44%), Positives = 91/172 (52%), Gaps = 62/172 (36%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
            DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F+      
Sbjct: 27  FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM------ 80

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                           GG+ TRH+                   GT             GG
Sbjct: 81  --------------CQGGDFTRHN-------------------GT-------------GG 94

Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                     KSIYG KFEDENF+LKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 95  ----------KSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 136

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  149 bits (378), Expect = 7e-45
 Identities = 53/60 (88%), Positives = 56/60 (93%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT K E
Sbjct: 80  MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE 139

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  177 bits (451), Expect = 6e-56
 Identities = 62/171 (36%), Positives = 77/171 (45%), Gaps = 62/171 (36%)

Query: 2   DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQ 61
            +   + +VGRI   L    VP+TA+NFR LC    G GY+ S+FHRIIP+F+       
Sbjct: 13  PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFM------- 65

Query: 62  SLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGD 121
                          GG+ TR                     GT                
Sbjct: 66  -------------IQGGDFTRG-------------------NGT---------------- 77

Query: 122 FTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                  GG+SIYG+KF DENF  KH   G+LSMAN+GPNTNGSQFF+ T 
Sbjct: 78  -------GGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTA 121

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  148 bits (377), Expect = 6e-45
 Identities = 41/60 (68%), Positives = 46/60 (76%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGDFT  NGTGG+SIYG+KF DENF  KH   G+LSMAN+GPNTNGSQFF+ T    
Sbjct: 65  MIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTS 124

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  176 bits (449), Expect = 9e-56
 Identities = 67/172 (38%), Positives = 82/172 (47%), Gaps = 62/172 (36%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
            +I I  +  GRI  +L  + VP+TA+NFR L T + GFGY+ S FHR+IP    FM + 
Sbjct: 7   FNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQ---FMLQ- 62

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                           GG+ TRH                    GT             GG
Sbjct: 63  ----------------GGDFTRH-------------------NGT-------------GG 74

Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                     KSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T 
Sbjct: 75  ----------KSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  148 bits (377), Expect = 5e-45
 Identities = 44/60 (73%), Positives = 48/60 (80%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGDFT HNGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T    
Sbjct: 60  MLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTS 119

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  173 bits (440), Expect = 3e-54
 Identities = 74/179 (41%), Positives = 86/179 (48%), Gaps = 69/179 (38%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDF 53
            DI IG +  GRI ++L  D+VP+TA NFR LCT E G G       ++GS FHRIIP+F
Sbjct: 8   FDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNF 67

Query: 54  VSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRI 113
           +                      GG+ TR                     GT        
Sbjct: 68  M--------------------IQGGDFTRG-------------------NGT-------- 80

Query: 114 NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                GG          +SIYG KF DENF  KHTGPGVLSMAN+GPNTNGSQFFLCT 
Sbjct: 81  -----GG----------ESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  149 bits (379), Expect = 3e-45
 Identities = 49/60 (81%), Positives = 51/60 (85%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGDFT  NGTGG+SIYG KF DENF  KHTGPGVLSMAN+GPNTNGSQFFLCT K E
Sbjct: 68  MIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTE 127

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  172 bits (438), Expect = 4e-54
 Identities = 62/178 (34%), Positives = 73/178 (41%), Gaps = 68/178 (38%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK------GFGYQGSSFHRIIPDFV 54
            DI I     GRI  +L  D+ PRT ENFR LCT EK         Y+ S FHRIIP F+
Sbjct: 8   FDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFM 67

Query: 55  SFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRIN 114
                                 GG+ T                      G+         
Sbjct: 68  --------------------CQGGDITNG-------------------NGS--------- 79

Query: 115 KMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
               GG          +SIYG  F DENF +KH  PG+LSMAN+GPNTN SQFF+   
Sbjct: 80  ----GG----------ESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  149 bits (380), Expect = 2e-45
 Identities = 39/60 (65%), Positives = 45/60 (75%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           MCQGGD TN NG+GG+SIYG  F DENF +KH  PG+LSMAN+GPNTN SQFF+      
Sbjct: 67  MCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCP 126

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  171 bits (437), Expect = 7e-54
 Identities = 64/172 (37%), Positives = 75/172 (43%), Gaps = 63/172 (36%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
            D+ I  + +GRITI L     P T ENFR LCT E GFGY+ S FHR+I +F+      
Sbjct: 16  FDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFM------ 69

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                           GG+ T                      GT             GG
Sbjct: 70  --------------IQGGDFTNF-------------------DGT-------------GG 83

Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
                     KSIYG KF DEN  +KH   G LSMAN+GPNTNGSQFF+ T 
Sbjct: 84  ----------KSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  141 bits (359), Expect = 4e-42
 Identities = 41/60 (68%), Positives = 45/60 (75%), Gaps = 1/60 (1%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGDFTN +GTGGKSIYG KF DEN  +KH   G LSMAN+GPNTNGSQFF+ T    
Sbjct: 69  MIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTP 127

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  172 bits (438), Expect = 3e-53
 Identities = 34/185 (18%), Positives = 57/185 (30%), Gaps = 56/185 (30%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
           MDI +  + +GR+ I+L  D  P   ENF  L   +                        
Sbjct: 19  MDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVN------------------- 59

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINK--MCQ 118
                         + G  + +++  I    +        G K  F  H   +       
Sbjct: 60  --------------SNGTGKYKYNRHINRTYE--------GCK--F--H--NVLHNNYIV 91

Query: 119 GGDFTNHNGTGGKSIYGNKFED---ENFVLKHTGPGVLSMA----NSGPNTNGSQFFLCT 171
            GD  N NG+   ++Y ++       ++   H   G+LS+      SG     S F +  
Sbjct: 92  SGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFMITL 151

Query: 172 TSINK 176
             I  
Sbjct: 152 DDIRP 156

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  131 bits (330), Expect = 3e-37
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFED---ENFILKHTGPGVLSMA----NSGPNTNGSQFF 245
               GD  N NG+   ++Y ++       ++   H   G+LS+      SG     S F 
Sbjct: 89  YIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFM 148

Query: 246 LCTTKQEICVKL--LD 259
           +          L  LD
Sbjct: 149 ITLDDIRPSNVLDELD 164

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  150 bits (382), Expect = 2e-45
 Identities = 39/60 (65%), Positives = 46/60 (76%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGDFT  +GTGG+SIYG+KF DENF+  H  P +LSMAN+GPNTNGSQFF+ T    
Sbjct: 84  MIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCP 143

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  147 bits (373), Expect = 4e-44
 Identities = 40/57 (70%), Positives = 46/57 (80%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
           M QGGDFT  +GTGG+SIYG+KF DENFV  H  P +LSMAN+GPNTNGSQFF+ T 
Sbjct: 84  MIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score = 96.1 bits (240), Expect = 2e-24
 Identities = 35/60 (58%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDF 53
           DI IG+   GRIT++L  D VP TAENFR LCT EKG G       Y GS FHRIIP F
Sbjct: 24 FDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQF 83

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  148 bits (375), Expect = 2e-44
 Identities = 37/58 (63%), Positives = 44/58 (75%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGDF N +GTG  SIY   F DENF L+H+ PG+LSMANSGP+TNG QFF+  +K
Sbjct: 73  MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSK 130

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  146 bits (370), Expect = 9e-44
 Identities = 38/66 (57%), Positives = 45/66 (68%), Gaps = 4/66 (6%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI- 174
           M QGGDF N +GTG  SIY   F DENF L+H+ PG+LSMANSGP+TNG QFF+  +   
Sbjct: 73  MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCD 132

Query: 175 ---NKH 177
               KH
Sbjct: 133 WLDGKH 138

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score = 97.2 bits (243), Expect = 5e-25
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 5/59 (8%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFHRIIPDFV 54
           D+ IG QEVGR+ I+L  D+VP+TAENFR  CT E        GY+GS+FHR+I DF+
Sbjct: 15 FDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFM 73

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  148 bits (375), Expect = 6e-44
 Identities = 42/60 (70%), Positives = 47/60 (78%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGDF NHNG+G  SIYG KF+DENF +KH   G+LSMANSGPNTNG QFF+ T K E
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 181

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  145 bits (369), Expect = 5e-43
 Identities = 40/57 (70%), Positives = 45/57 (78%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
           M QGGDF NHNG+G  SIYG KF+DENF +KH   G+LSMANSGPNTNG QFF+ T 
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTK 178

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score = 97.5 bits (243), Expect = 2e-24
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF-----GYQGSSFHRIIPDF 53
           MDI +G   +G+   +L  ++VP+T+ENFR  CT E        GY+ + FHR+I +F
Sbjct: 64  MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 121

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  145 bits (368), Expect = 2e-43
 Identities = 39/58 (67%), Positives = 46/58 (79%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGDFT  +GTGG+SIYG  F+DE F++KH  P V+SMAN GPNTNGSQFF+ TT 
Sbjct: 72  MIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTP 129

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  143 bits (364), Expect = 7e-43
 Identities = 40/57 (70%), Positives = 46/57 (80%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
           M QGGDFT  +GTGG+SIYG  F+DE FV+KH  P V+SMAN GPNTNGSQFF+ TT
Sbjct: 72  MIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTT 128

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score = 97.6 bits (244), Expect = 4e-25
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 8/61 (13%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
          +D+ I     GRI ++L  D+ PRT  NF  LCT   G G        Y+GS+FHR+I +
Sbjct: 11 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKN 70

Query: 53 F 53
          F
Sbjct: 71 F 71

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  146 bits (370), Expect = 2e-43
 Identities = 37/58 (63%), Positives = 43/58 (74%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGDF+  NG GG+SIYG  F+DENFILKH    +LSMAN G +TNGSQFF+ T  
Sbjct: 85  MIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKP 142

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  144 bits (365), Expect = 7e-43
 Identities = 36/57 (63%), Positives = 43/57 (75%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
           M QGGDF+  NG GG+SIYG  F+DENF+LKH    +LSMAN G +TNGSQFF+ T 
Sbjct: 85  MIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTK 141

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score = 98.4 bits (246), Expect = 3e-25
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 8/61 (13%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
           DI+I ++ VGRI  QL  D+ P+T +NF CLC+ EKG G        Y+GS+FHR++ +
Sbjct: 24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN 83

Query: 53 F 53
          F
Sbjct: 84 F 84

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  144 bits (367), Expect = 2e-43
 Identities = 35/58 (60%), Positives = 42/58 (72%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           M QGGDF+  NG GG+SIYG  FEDE+F +KH    +LSMAN G +TNGSQFF+ T  
Sbjct: 75  MVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKP 132

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  143 bits (363), Expect = 1e-42
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTT 172
           M QGGDF+  NG GG+SIYG  FEDE+F +KH    +LSMAN G +TNGSQFF+ T 
Sbjct: 75  MVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTK 131

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score = 98.0 bits (245), Expect = 3e-25
 Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 8/61 (13%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
           DI I  Q  GR+  +L  D+ P+T ENFRCLCT EKG G        Y+   FHR++ D
Sbjct: 14 FDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKD 73

Query: 53 F 53
          F
Sbjct: 74 F 74

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  143 bits (363), Expect = 1e-40
 Identities = 41/60 (68%), Positives = 46/60 (76%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           M QGGDF+N NGTGG+SIYG KFEDENF  KH   G+LSMAN+G NTNGSQFF+ T    
Sbjct: 81  MIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTP 140

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  141 bits (356), Expect = 1e-39
 Identities = 43/66 (65%), Positives = 48/66 (72%), Gaps = 4/66 (6%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI- 174
           M QGGDF+N NGTGG+SIYG KFEDENF  KH   G+LSMAN+G NTNGSQFF+ T    
Sbjct: 81  MIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTP 140

Query: 175 ---NKH 177
               KH
Sbjct: 141 HLDGKH 146

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  100 bits (252), Expect = 9e-25
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 8/62 (12%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
           D+ IG + VGRI ++L  D+VP+TAENFR LCT EKG G        ++G  FHRII  
Sbjct: 20 FDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKK 79

Query: 53 FV 54
          F+
Sbjct: 80 FM 81

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  107 bits (269), Expect = 6e-29
 Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 2/60 (3%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           M Q GD +  +GTGG+SI+GN+FEDE F  L H+ P ++SMAN GPNTNGSQFF+ T   
Sbjct: 55  MVQTGDPSG-DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPC 113

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  106 bits (267), Expect = 1e-28
 Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 6/67 (8%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           M Q GD +  +GTGG+SI+GN+FEDE F  L H+ P ++SMAN GPNTNGSQFF+ T   
Sbjct: 55  MVQTGDPSG-DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPC 113

Query: 175 ----NKH 177
                KH
Sbjct: 114 PWLDFKH 120

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          +G I I L Y    +T +NF        G+ Y    FHR+I  F
Sbjct: 14 MGDIHISLFYKECKKTVQNFSVHSI--NGY-YNNCIFHRVIKHF 54

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  106 bits (267), Expect = 1e-28
 Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           M Q GD T   G GG+SI+G +FEDE +  L+H  P  LSMAN+G NTNGSQFF+     
Sbjct: 71  MIQTGDPTG-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPT 129

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  106 bits (266), Expect = 2e-28
 Identities = 35/67 (52%), Positives = 42/67 (62%), Gaps = 6/67 (8%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           M Q GD T   G GG+SI+G +FEDE +  L+H  P  LSMAN+G NTNGSQFF+     
Sbjct: 71  MIQTGDPTG-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPT 129

Query: 175 ----NKH 177
               NKH
Sbjct: 130 PWLDNKH 136

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 2  DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          D  I    +G I  +L     P+T ENF        G+ Y G +FHRII  F
Sbjct: 22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGF 70

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  107 bits (268), Expect = 2e-28
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 2/60 (3%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           M QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQFF+     
Sbjct: 61  MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  106 bits (266), Expect = 4e-28
 Identities = 37/67 (55%), Positives = 44/67 (65%), Gaps = 6/67 (8%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           M QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQFF+     
Sbjct: 61  MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119

Query: 175 ----NKH 177
                KH
Sbjct: 120 QWLDGKH 126

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          +G I ++L +   P+T +NF  L    +G+ Y G+ FHRII DF
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDF 60

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  104 bits (263), Expect = 5e-28
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 2/60 (3%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           M QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQFF+     
Sbjct: 61  MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  104 bits (261), Expect = 8e-28
 Identities = 37/67 (55%), Positives = 44/67 (65%), Gaps = 6/67 (8%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           M QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQFF+     
Sbjct: 61  MIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119

Query: 175 ----NKH 177
                KH
Sbjct: 120 QWLDGKH 126

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          +G I ++L +   P+T +NF  L    +G+ Y G+ FHRII DF
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDF 60

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  103 bits (260), Expect = 2e-27
 Identities = 37/60 (61%), Positives = 42/60 (70%), Gaps = 2/60 (3%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           + QGGD T   G GGKSIYG  FEDE N  LKHTG G+LSM+N+GPNTN SQFF+     
Sbjct: 88  VIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPL 146

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  103 bits (259), Expect = 4e-27
 Identities = 39/67 (58%), Positives = 45/67 (67%), Gaps = 6/67 (8%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           + QGGD T   G GGKSIYG  FEDE N  LKHTG G+LSM+N+GPNTN SQFF+    +
Sbjct: 88  VIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPL 146

Query: 175 ----NKH 177
                KH
Sbjct: 147 PHLDGKH 153

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          +G   ++L +   P+T  NF  LC  E GF Y  + FHR+IP+F
Sbjct: 47 LGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNF 87

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score = 96.9 bits (242), Expect = 4e-25
 Identities = 37/60 (61%), Positives = 42/60 (70%), Gaps = 2/60 (3%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           M Q GD T   G GG SI+G KFEDE +  LKH   GV+SMAN+GPNTNGSQFF+   KQ
Sbjct: 50  MVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQ 108

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score = 96.1 bits (240), Expect = 1e-24
 Identities = 35/54 (64%), Positives = 39/54 (72%), Gaps = 2/54 (3%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFF 168
           M Q GD T   G GG SI+G KFEDE +  LKH   GV+SMAN+GPNTNGSQFF
Sbjct: 50  MVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFF 102

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score = 53.3 bits (129), Expect = 6e-09
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          VG I I++  +  P+T ENF  LC     + Y G  FHR I  F
Sbjct: 9  VGDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGF 49

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score = 95.4 bits (238), Expect = 3e-24
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 6/67 (8%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           + QGGD T   G+GG+SIYG  F+DE +  L+    G+++MAN+G + NGSQFF      
Sbjct: 74  IVQGGDPTG-TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRA 132

Query: 175 ----NKH 177
               NKH
Sbjct: 133 DELNNKH 139

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score = 95.4 bits (238), Expect = 4e-24
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           + QGGD T   G+GG+SIYG  F+DE +  L+    G+++MAN+G + NGSQFF    + 
Sbjct: 74  IVQGGDPTG-TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRA 132

Query: 252 E 252
           +
Sbjct: 133 D 133

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
           G I I+L     P+   NF  LC   + + Y  + FHR++P F+
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGFI 74

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score = 95.5 bits (238), Expect = 4e-24
 Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 2/60 (3%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
           + QGGD T   GTGG+S +G  F+DE    L HTG G+LSMANSGPN+N SQFF+     
Sbjct: 69  VIQGGDPTG-TGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSC 127

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score = 95.5 bits (238), Expect = 5e-24
 Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 6/67 (8%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           + QGGD T   GTGG+S +G  F+DE    L HTG G+LSMANSGPN+N SQFF+   S 
Sbjct: 69  VIQGGDPTG-TGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSC 127

Query: 175 ----NKH 177
                KH
Sbjct: 128 AYLDKKH 134

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           G + ++L  DL P+T ENF  LC  +K + Y G+ FHR I +F
Sbjct: 28 KGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNF 68

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score = 93.5 bits (233), Expect = 2e-23
 Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 6/64 (9%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFI-LKHTGPGVLSMANSG----PNTNGSQFFLC 247
           + QGGD T   G GG+SIYG  F+DE +  LK+   G+LSMA+ G    PNTNGSQFF+ 
Sbjct: 66  IIQGGDPTG-TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFIT 124

Query: 248 TTKQ 251
            +  
Sbjct: 125 YSSL 128

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score = 93.5 bits (233), Expect = 2e-23
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 10/71 (14%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENF-VLKHTGPGVLSMANSG----PNTNGSQFFLC 170
           + QGGD T   G GG+SIYG  F+DE +  LK+   G+LSMA+ G    PNTNGSQFF+ 
Sbjct: 66  IIQGGDPTG-TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFIT 124

Query: 171 TTSI----NKH 177
            +S+     ++
Sbjct: 125 YSSLPQLNGEY 135

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           G +  +L     P+  +NF  L     G+ Y+ + FH+ I  F
Sbjct: 25 YGDLKFELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIKGF 65

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score = 89.7 bits (223), Expect = 8e-22
 Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 16/78 (20%)

Query: 116 MCQGGDFTNH----NGTGGKSIY-------GNKFEDE-NFVLKHTGPGVLSMANSGPNTN 163
           M QGG              +S         G  FEDE +  L H G GVLSMAN G ++N
Sbjct: 56  MIQGGRAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSN 115

Query: 164 GSQFFLCTTSI----NKH 177
            S+FF+   S     NKH
Sbjct: 116 LSEFFITFKSCEHLNNKH 133

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score = 89.3 bits (222), Expect = 9e-22
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 193 MCQGGDFTNH----NGTGGKSIY-------GNKFEDE-NFILKHTGPGVLSMANSGPNTN 240
           M QGG              +S         G  FEDE +  L H G GVLSMAN G ++N
Sbjct: 56  MIQGGRAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSN 115

Query: 241 GSQFFLCTTKQ 251
            S+FF+     
Sbjct: 116 LSEFFITFKSC 126

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           G + I+L  D+ PR  ++F  LC     + +  + FHR I +F
Sbjct: 15 QGSLNIELHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNF 55

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score = 84.4 bits (209), Expect = 6e-20
 Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 162 TNGSQFFLCTTSINKHYYYYYYYIF---LTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE 218
                +     S      +Y   +F   +  F  M QGGD T   G GG    G KF DE
Sbjct: 56  QGTKDYSTQNASGGPSGPFYDGAVFHRVIQGF--MIQGGDPTG-TGRGGP---GYKFADE 109

Query: 219 -NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
            +  L+   P +L+MAN+GP TNGSQFF+   K 
Sbjct: 110 FHPELQFDKPYLLAMANAGPGTNGSQFFITVGKT 143

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 9/67 (13%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           M QGGD T   G GG    G KF DE +  L+   P +L+MAN+GP TNGSQFF+     
Sbjct: 88  MIQGGDPTG-TGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKT 143

Query: 175 ----NKH 177
                +H
Sbjct: 144 PHLNRRH 150

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 12/55 (21%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFG------------YQGSSFHRIIPDF 53
          G I I L  +  P+T  NF  L    K +             Y G+ FHR+I  F
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGF 87

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score = 78.3 bits (193), Expect = 2e-17
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 24/84 (28%)

Query: 116 MCQGGDFTNHNGTGGK--SIYGNKFEDENFV--LKHTGPGVLSMANSGPN---------- 161
           + QGGD T   G GG   +  G  F+ E     LK    G++ +AN G +          
Sbjct: 71  IVQGGDPTG-TGRGGADTTFDGKPFDVE-THPRLKFRYRGLVGVANLGRSSKDAENDERG 128

Query: 162 ----TNGSQFFLCTTSI----NKH 177
               TNG+QFF+         N +
Sbjct: 129 RSLGTNGNQFFITLARADVLNNAY 152

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score = 77.5 bits (191), Expect = 4e-17
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 18/77 (23%)

Query: 193 MCQGGDFTNHNGTGGK--SIYGNKFEDE-NFILKHTGPGVLSMANSGPN----------- 238
           + QGGD T   G GG   +  G  F+ E +  LK    G++ +AN G +           
Sbjct: 71  IVQGGDPTG-TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGR 129

Query: 239 ---TNGSQFFLCTTKQE 252
              TNG+QFF+   + +
Sbjct: 130 SLGTNGNQFFITLARAD 146

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          +G + ++L     P    NF  LC   +G+ Y  + FHR++ DF+
Sbjct: 30 LGDLDVELWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFI 71

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score = 77.0 bits (189), Expect = 3e-16
 Identities = 33/181 (18%), Positives = 46/181 (25%), Gaps = 56/181 (30%)

Query: 1   MDIKIG---KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFM 57
           M +KI      E     I L     P TA NF  L   E+ F Y G    R    FV   
Sbjct: 175 MKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQRS-DGFV--- 227

Query: 58  TKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMC 117
                               G+                P           +  +R   + 
Sbjct: 228 -----------------VQTGD----------------PEGPAEGFIDPSTEKTRTVPLE 254

Query: 118 QGGDFTNHNGTGGKSIYGNKFED-----ENFVLKHTGPGVLSMANSG--PNTNGSQFFLC 170
                    G      YG+  E+        V+     G ++MA      ++  SQ F  
Sbjct: 255 IM-----VTGEKT-PFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWL 308

Query: 171 T 171
            
Sbjct: 309 L 309

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 27/96 (28%)

Query: 193 MCQGGD-------FTNHNGTGGKSI-------------YGNKFED-----ENFILKHTGP 227
           + Q GD       F + +    +++             YG+  E+        ++     
Sbjct: 227 VVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAF 286

Query: 228 GVLSMANSG--PNTNGSQFFLCTTKQEICVKLLDLL 261
           G ++MA      ++  SQ F    + E+     ++L
Sbjct: 287 GTMAMAREEFENDSGSSQVFWLLKESELTPSNSNIL 322

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMA-NSGPNTNGSQFF 168
           M QGG F         +       +E N  LK+     ++MA  + P++  +QFF
Sbjct: 53  MIQGGGFE-PGLKQKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFF 103

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score = 54.4 bits (132), Expect = 2e-09
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMA-NSGPNTNGSQFF 245
           M QGG F         +       +E N  LK+     ++MA  + P++  +QFF
Sbjct: 53  MIQGGGFE-PGLKQKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFF 103

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G I ++L     P+T ENF      +KG  Y G+ FHR+I  F+
Sbjct: 13 GVIKLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFM 53

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE--NFVLKHTGPGVLSMA-NSGPNTNGSQFF 168
           M QGG F        +       ++E  N  LK+T  G L+MA    P++  +QFF
Sbjct: 49  MIQGGGFE---PGMKQKATKEPIKNEANNG-LKNT-RGTLAMARTQAPHSATAQFF 99

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDE--NFILKHTGPGVLSMA-NSGPNTNGSQFF 245
           M QGG F        +       ++E  N  LK+T  G L+MA    P++  +QFF
Sbjct: 49  MIQGGGFE---PGMKQKATKEPIKNEANNG-LKNT-RGTLAMARTQAPHSATAQFF 99

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score = 50.2 bits (121), Expect = 7e-08
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G I I+   D  P T +NF   C   +GF Y  + FHR+I  F+
Sbjct: 9  GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFM 49

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMA-NSGPNTNGSQFF 168
           M QGG FT       K     K E +N  L++T  G ++MA  +  ++  SQFF
Sbjct: 54  MIQGGGFTE-QMQQKKPNPPIKNEADNG-LRNT-RGTIAMARTADKDSATSQFF 104

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 193 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMA-NSGPNTNGSQFF 245
           M QGG FT       K     K E +N  L++T  G ++MA  +  ++  SQFF
Sbjct: 54  MIQGGGFTE-QMQQKKPNPPIKNEADNG-LRNT-RGTIAMARTADKDSATSQFF 104

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score = 49.9 bits (120), Expect = 7e-08
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G I ++L     P + +NF        GF Y  ++FHR+IP F+
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFM 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	99.97
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	99.6
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	99.59
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	99.59
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	99.59
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	99.59
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	99.59
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	99.59
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	99.58
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	99.58
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	99.58
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	99.57
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	99.56
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	99.55
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	99.55
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	99.54
1z81_A	229	Cyclophilin; structural genomics, structural genom	99.53
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	99.51
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	99.51
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.48
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	99.41
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	99.3
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	99.3
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	99.29
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	99.29
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	99.28
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	99.27
2b71_A	196	Cyclophilin-like protein; structural genomics, str	99.26
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	99.25
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	99.22
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	99.18
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	99.12
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	99.09
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	99.04
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	99.02
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	98.98
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	98.87

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=1e-42  Score=297.32  Aligned_cols=144  Identities=58%  Similarity=1.048  Sum_probs=128.4

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||+|.+|++|+|+||||.+.||+||+||++||+|+++|+|+++.||||+|+|                           
T Consensus         8 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f---------------------------   60 (165)
T 2z6w_A            8 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSF---------------------------   60 (165)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTT---------------------------
T ss_pred             EEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCC---------------------------
Confidence            69999999999999999999999999999999988899999999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         |+|+||+...+                                  
T Consensus        61 -----------------------------------~iQgGd~~~~~----------------------------------   71 (165)
T 2z6w_A           61 -----------------------------------MCQAGDFTNHN----------------------------------   71 (165)
T ss_dssp             -----------------------------------EEEECCTTTSS----------------------------------
T ss_pred             -----------------------------------EEEeCCccCCC----------------------------------
Confidence                                               89998876432                                  


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                 |+++.++|+..|++|+..++|.++|+|||||++|+++
T Consensus        72 -------------------------------------------g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~  108 (165)
T 2z6w_A           72 -------------------------------------------GTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTN  108 (165)
T ss_dssp             -------------------------------------------SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCB
T ss_pred             -------------------------------------------CCCCCcccCCcccCcccccccCCCCEEEEeeCCCCCc
Confidence                                                       3344566677788888888999999999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      +||||||++++||||++|||||+|++||||            +|+.+| .|..||+
T Consensus       109 ~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~~~~~P~~~v-~I~~~g~  163 (165)
T 2z6w_A          109 GSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKI-VITDCGQ  163 (165)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCE-EEEEEEE
T ss_pred             ccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCcE-EEEEeEE
Confidence            999999999999999999999999999995            566777 7777775

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=9.8e-43  Score=299.14  Aligned_cols=144  Identities=58%  Similarity=1.007  Sum_probs=128.4

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||+|.+|+.|+|+||||++.||+||+||++||++++||+|+++.||||+|+|                           
T Consensus        15 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f---------------------------   67 (172)
T 2cmt_A           15 FDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQF---------------------------   67 (172)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTT---------------------------
T ss_pred             EEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCC---------------------------
Confidence            68999999999999999999999999999999988789889999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         |||+||+...                                   
T Consensus        68 -----------------------------------~iQgGd~~~~-----------------------------------   77 (172)
T 2cmt_A           68 -----------------------------------MCQGGDFVKG-----------------------------------   77 (172)
T ss_dssp             -----------------------------------EEEECCTTTS-----------------------------------
T ss_pred             -----------------------------------EEEcCCccCC-----------------------------------
Confidence                                               8999887642                                   


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                +|+++.++|+.+|++|+..++|+++|+|||||++|+++
T Consensus        78 ------------------------------------------~G~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~  115 (172)
T 2cmt_A           78 ------------------------------------------DGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTN  115 (172)
T ss_dssp             ------------------------------------------SSSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCB
T ss_pred             ------------------------------------------CCCCCCccCCCcccccccCcccCCceEEEEeeCCCCCc
Confidence                                                      33445566777788888888999999999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      +||||||++++||||++|||||+|++||||            +|+.+| .|..||+
T Consensus       116 gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~~~P~~~v-~I~~~g~  170 (172)
T 2cmt_A          116 GSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPV-IISRCGE  170 (172)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTTCCCSSCE-EEEEEEE
T ss_pred             ccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCCE-EEEEeEe
Confidence            999999999999999999999999999995            566777 7777775

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=1e-42  Score=299.40  Aligned_cols=144  Identities=67%  Similarity=1.132  Sum_probs=129.1

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||+|.+|++|+|+||||.+.||+||+||++||+|++||+|+++.||||+|+|                           
T Consensus        16 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f---------------------------   68 (173)
T 2r99_A           16 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQF---------------------------   68 (173)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTT---------------------------
T ss_pred             EEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCC---------------------------
Confidence            68999999999999999999999999999999998899889999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         |||+||+...                                   
T Consensus        69 -----------------------------------~iQgGd~~~~-----------------------------------   78 (173)
T 2r99_A           69 -----------------------------------MCQGGDFTNH-----------------------------------   78 (173)
T ss_dssp             -----------------------------------EEEECCTTTS-----------------------------------
T ss_pred             -----------------------------------EEEeCCcCCC-----------------------------------
Confidence                                               8999887642                                   


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                +|+++.++|+.+|.+|+..++|+++|+|||||++||++
T Consensus        79 ------------------------------------------~g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~  116 (173)
T 2r99_A           79 ------------------------------------------NGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTN  116 (173)
T ss_dssp             ------------------------------------------SSSCCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCB
T ss_pred             ------------------------------------------CCCCCCccCCCcccCcccCcccCCCcEEEEccCCCCCc
Confidence                                                      33445566777788888888999999999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      +||||||++++||||++|||||+|++||||            +|+.+| .|..||+
T Consensus       117 gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~P~~~v-~I~~cG~  171 (173)
T 2r99_A          117 GSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKV-IIADCGE  171 (173)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCE-EEEEEEE
T ss_pred             ccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCCe-EEEEeee
Confidence            999999999999999999999999999994            567777 7888876

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=1.2e-42  Score=298.49  Aligned_cols=143  Identities=52%  Similarity=0.790  Sum_probs=128.8

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||+|++|++|+|+||||++.||+||+||++||+|+++|+|+++.||||+|+|                           
T Consensus        16 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f---------------------------   68 (172)
T 2haq_A           16 FDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNF---------------------------   68 (172)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTT---------------------------
T ss_pred             EEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCC---------------------------
Confidence            69999999999999999999999999999999999999999999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         |||+||+...                                   
T Consensus        69 -----------------------------------~iQgGd~~~~-----------------------------------   78 (172)
T 2haq_A           69 -----------------------------------MIQGGDFTNF-----------------------------------   78 (172)
T ss_dssp             -----------------------------------EEEECCTTTS-----------------------------------
T ss_pred             -----------------------------------EEecCCccCC-----------------------------------
Confidence                                               8999886542                                   


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                +|+++.|+||++|++|+..++|. +|+|||||.+|+++
T Consensus        79 ------------------------------------------~g~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tn  115 (172)
T 2haq_A           79 ------------------------------------------DGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTN  115 (172)
T ss_dssp             ------------------------------------------SSSCCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCB
T ss_pred             ------------------------------------------CCCCCccccCCcccCcCCCcccC-ceEEEEccCCCCCc
Confidence                                                      33445567777888888888999 99999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      +||||||++++||||++|||||+|++||||             +|+.+| .|..||+
T Consensus       116 gSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v-~I~~~g~  171 (172)
T 2haq_A          116 GSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPV-KIVASGE  171 (172)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCE-EEEEEEE
T ss_pred             ccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCe-EEEEeEE
Confidence            999999999999999999999999999994             677777 7777775

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=2.9e-42  Score=297.61  Aligned_cols=143  Identities=48%  Similarity=0.825  Sum_probs=126.8

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCC---------ceecCceeEEeccCccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG---------FGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFR   71 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g---------~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~   71 (287)
                      |||+|.+|++|+|+||||.+.||+||+||++||+++++         | |+++.||||+|+|                  
T Consensus        11 ~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~-Y~g~~FhRvi~~f------------------   71 (177)
T 1a58_A           11 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNF------------------   71 (177)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTT------------------
T ss_pred             EEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcce-eCCCEEEEEECCC------------------
Confidence            69999999999999999999999999999999986432         7 9999999999999                  


Q ss_pred             cccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCC
Q psy13279         72 FDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPG  151 (287)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G  151 (287)
                                                                  |||+||+...                          
T Consensus        72 --------------------------------------------~iQgGd~~~~--------------------------   81 (177)
T 1a58_A           72 --------------------------------------------MIQGGDFTKG--------------------------   81 (177)
T ss_dssp             --------------------------------------------EEEECCCSSS--------------------------
T ss_pred             --------------------------------------------EEEeCCccCC--------------------------
Confidence                                                        8998887542                          


Q ss_pred             ceeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhh
Q psy13279        152 VLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLS  231 (287)
Q Consensus       152 ~l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~ls  231 (287)
                                                                         +|+++.++|+.+|.+|+..++|+++|+||
T Consensus        82 ---------------------------------------------------~g~gg~si~g~~f~dE~~~~~h~~~G~ls  110 (177)
T 1a58_A           82 ---------------------------------------------------DGTGGESIYGGMFDDEEFVMKHDEPFVVS  110 (177)
T ss_dssp             ---------------------------------------------------SSSCCCCTTSSCBCCCCCCSCCCSSSEEE
T ss_pred             ---------------------------------------------------CCCCCCcccCCcccCcccCcccCCCeEEE
Confidence                                                               33445567777788888888999999999


Q ss_pred             hhhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        232 MANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       232 MA~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      |||++|++++||||||++++||||++|||||+|++||||             +|+.+| .|..||+
T Consensus       111 mAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v-~I~~~G~  175 (177)
T 1a58_A          111 MANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADV-VILNCGE  175 (177)
T ss_dssp             ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCE-EEEEEEE
T ss_pred             EeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCe-EEEEeEE
Confidence            999999999999999999999999999999999999994             567777 7888876

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=3.2e-42  Score=297.76  Aligned_cols=143  Identities=45%  Similarity=0.755  Sum_probs=126.9

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccC---------CCceecCceeEEeccCccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE---------KGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFR   71 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~---------~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~   71 (287)
                      |||+|.+|++|+|+||||++.||+||+||++||+|+         .+| |+++.||||+|+|                  
T Consensus        14 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~-Y~g~~FhRvi~~f------------------   74 (179)
T 2wfi_A           14 FDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLH-YKSCLFHRVVKDF------------------   74 (179)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTT------------------
T ss_pred             EEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCe-ECCCEEEEEECCC------------------
Confidence            699999999999999999999999999999999865         457 9999999999999                  


Q ss_pred             cccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCC
Q psy13279         72 FDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPG  151 (287)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G  151 (287)
                                                                  |||+||+...                          
T Consensus        75 --------------------------------------------~iQgGd~~~~--------------------------   84 (179)
T 2wfi_A           75 --------------------------------------------MVQGGDFSEG--------------------------   84 (179)
T ss_dssp             --------------------------------------------EEEECCTTTS--------------------------
T ss_pred             --------------------------------------------EEEcccccCC--------------------------
Confidence                                                        8999887542                          


Q ss_pred             ceeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhh
Q psy13279        152 VLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLS  231 (287)
Q Consensus       152 ~l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~ls  231 (287)
                                                                         +|+++.|||+..|++|++.++|+++|+||
T Consensus        85 ---------------------------------------------------~g~gg~si~g~~f~dE~~~~~h~~~G~ls  113 (179)
T 2wfi_A           85 ---------------------------------------------------NGRGGESIYGGFFEDESFAVKHNKEFLLS  113 (179)
T ss_dssp             ---------------------------------------------------SSSCCCCTTSSCBCCCCCCSCCCSTTEEE
T ss_pred             ---------------------------------------------------CCCCCCcccCCcccccccCcCcCCCeEEE
Confidence                                                               33445567777788888888999999999


Q ss_pred             hhhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        232 MANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       232 MA~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      |||.+|++++||||||++++||||++|||||+|++||||             +|+.+| .|..||+
T Consensus       114 MAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v-~I~~~G~  178 (179)
T 2wfi_A          114 MANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEV-RILSCGE  178 (179)
T ss_dssp             ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSSCE-EEEEEEE
T ss_pred             EEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCCCe-EEEeCee
Confidence            999999999999999999999999999999999999994             567777 7788875

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=3.5e-42  Score=293.68  Aligned_cols=144  Identities=51%  Similarity=0.835  Sum_probs=129.1

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||+|.+|++|+|+||||++.||+||+||++||+|+++|+|+++.||||+|+|                           
T Consensus         7 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f---------------------------   59 (164)
T 3pmp_A            7 FNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQF---------------------------   59 (164)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTT---------------------------
T ss_pred             EEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCC---------------------------
Confidence            79999999999999999999999999999999988899999999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         |+|+||+...                                   
T Consensus        60 -----------------------------------~iQgGd~~~~-----------------------------------   69 (164)
T 3pmp_A           60 -----------------------------------MLQGGDFTRH-----------------------------------   69 (164)
T ss_dssp             -----------------------------------EEEECCTTTS-----------------------------------
T ss_pred             -----------------------------------eEEeCCCCCC-----------------------------------
Confidence                                               8999886542                                   


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                +++++.++|+.+|.+|+..++|+++|+|||||.+|+++
T Consensus        70 ------------------------------------------~g~gg~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~  107 (164)
T 3pmp_A           70 ------------------------------------------NGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTN  107 (164)
T ss_dssp             ------------------------------------------SSSCCCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCB
T ss_pred             ------------------------------------------CCCCCcccCCccccccccccCcCCCcEEEEeeCCCCCc
Confidence                                                      33455667777888888889999999999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      +||||||++++||||++|||||||++||||            +|..+| .|..||+
T Consensus       108 ~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~~~P~~~v-~I~~cg~  162 (164)
T 3pmp_A          108 GSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATI-KITDCGT  162 (164)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCE-EEEEEEE
T ss_pred             ccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCCCCCcccCE-EEEeCeE
Confidence            999999999999999999999999999995            566677 7777775

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=3.2e-42  Score=296.25  Aligned_cols=144  Identities=59%  Similarity=1.002  Sum_probs=127.6

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCce-------ecCceeEEeccCccccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFD   73 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~-------Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~   73 (287)
                      ||++|.+|++|+|+||||.+.||+||+||++||++++|++       |+++.||||+|+|                    
T Consensus         8 ~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f--------------------   67 (173)
T 2igv_A            8 FDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNF--------------------   67 (173)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTT--------------------
T ss_pred             EEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCC--------------------
Confidence            6999999999999999999999999999999998877732       9999999999999                    


Q ss_pred             cccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCce
Q psy13279         74 FAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVL  153 (287)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l  153 (287)
                                                                |||+||+...                            
T Consensus        68 ------------------------------------------~iQgGd~~~~----------------------------   77 (173)
T 2igv_A           68 ------------------------------------------MIQGGDFTRG----------------------------   77 (173)
T ss_dssp             ------------------------------------------EEEECCTTTS----------------------------
T ss_pred             ------------------------------------------EEEcCCCCCC----------------------------
Confidence                                                      8999887542                            


Q ss_pred             eccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhh
Q psy13279        154 SMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMA  233 (287)
Q Consensus       154 ~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA  233 (287)
                                                                       +|+++.+||+.+|++|+..++|+++|+||||
T Consensus        78 -------------------------------------------------~G~gg~siyg~~f~dE~~~l~h~~~G~lsmA  108 (173)
T 2igv_A           78 -------------------------------------------------NGTGGESIYGEKFPDENFKEKHTGPGVLSMA  108 (173)
T ss_dssp             -------------------------------------------------SSSCCCBTTBSCBCCCCCCSCCCSTTEEEEC
T ss_pred             -------------------------------------------------CCCCCCccCCCcccCcccccCCCCCeEEEEe
Confidence                                                             3344556677778888888899999999999


Q ss_pred             hcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        234 NSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       234 ~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      |++|++++||||||++++||||++|||||+|++||||            +|+.+| .|..||+
T Consensus       109 n~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~v-~I~~~g~  170 (173)
T 2igv_A          109 NAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDC-MIADCGQ  170 (173)
T ss_dssp             CSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCE-EEEEEEE
T ss_pred             eCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCCE-EEEEeEE
Confidence            9999999999999999999999999999999999995            567777 7788875

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=4e-42  Score=298.60  Aligned_cols=144  Identities=53%  Similarity=0.833  Sum_probs=128.3

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCce-------ecCceeEEeccCccccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFD   73 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~-------Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~   73 (287)
                      |||+|.+|+.|+|+||||++.||+||+||++||++++||+       |+++.||||+|+|                    
T Consensus        24 ~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f--------------------   83 (186)
T 2poy_A           24 FDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQF--------------------   83 (186)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTT--------------------
T ss_pred             EEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCC--------------------
Confidence            6899999999999999999999999999999998888886       9999999999999                    


Q ss_pred             cccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCce
Q psy13279         74 FAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVL  153 (287)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l  153 (287)
                                                                |||+||+...                            
T Consensus        84 ------------------------------------------~iQgGd~~~~----------------------------   93 (186)
T 2poy_A           84 ------------------------------------------MIQGGDFTRG----------------------------   93 (186)
T ss_dssp             ------------------------------------------EEEECCTTTS----------------------------
T ss_pred             ------------------------------------------EEEeCCCCCC----------------------------
Confidence                                                      8999887542                            


Q ss_pred             eccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhh
Q psy13279        154 SMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMA  233 (287)
Q Consensus       154 ~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA  233 (287)
                                                                       +|+++.|||+.+|++|+..++|+++|+||||
T Consensus        94 -------------------------------------------------~G~gg~si~g~~f~dE~~~l~h~~~G~lsMA  124 (186)
T 2poy_A           94 -------------------------------------------------DGTGGESIYGSKFRDENFVYTHDAPFLLSMA  124 (186)
T ss_dssp             -------------------------------------------------SSSCCCCTTC-CBCCCCCCSCCCSTTEEEEC
T ss_pred             -------------------------------------------------CCCCCCccCCCcccCcccccccCCCcEEEEe
Confidence                                                             3344556677778888888899999999999


Q ss_pred             hcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        234 NSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       234 ~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      |.+||+++||||||++++||||++|||||+|++||||            +|+.+| .|..|||
T Consensus       125 n~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~P~~~v-~I~~cG~  186 (186)
T 2poy_A          125 NAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSV-CITASGV  186 (186)
T ss_dssp             CSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCE-EEEEEEC
T ss_pred             eCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCCE-EEEeCCC
Confidence            9999999999999999999999999999999999995            577778 8888875

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=5.7e-42  Score=298.22  Aligned_cols=144  Identities=50%  Similarity=0.839  Sum_probs=128.6

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||+|.+|++|+|+||||.+.||+||+||++||+|++||+|+++.||||+|+|                           
T Consensus        20 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f---------------------------   72 (188)
T 3ich_A           20 FDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDF---------------------------   72 (188)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTT---------------------------
T ss_pred             EEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCC---------------------------
Confidence            68999999999999999999999999999999998899999999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         |||+||+...                                   
T Consensus        73 -----------------------------------~iQgGd~~~~-----------------------------------   82 (188)
T 3ich_A           73 -----------------------------------MIQGGDFTRG-----------------------------------   82 (188)
T ss_dssp             -----------------------------------EEEECCTTTS-----------------------------------
T ss_pred             -----------------------------------EEEcCCccCC-----------------------------------
Confidence                                               8999886542                                   


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                +|+++.||||.+|.+|+..++|+++|+|||||.+|+++
T Consensus        83 ------------------------------------------~g~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tn  120 (188)
T 3ich_A           83 ------------------------------------------DGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTN  120 (188)
T ss_dssp             ------------------------------------------SSSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCB
T ss_pred             ------------------------------------------CCCCCccccCCcccccccCcccCCCeEEEEccCCCCCc
Confidence                                                      33445567777788888888999999999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      +||||||++++||||++|||||+|++||||             +|+.+| .|..|++
T Consensus       121 gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v-~I~~~~~  176 (188)
T 3ich_A          121 GSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDV-IIADCGK  176 (188)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCE-EEEEEEE
T ss_pred             ccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCE-EEEEeEE
Confidence            999999999999999999999999999994             566777 7777764

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=6e-42  Score=293.82  Aligned_cols=143  Identities=50%  Similarity=0.833  Sum_probs=126.6

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCce-------ecCceeEEeccCccccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFD   73 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~-------Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~   73 (287)
                      |||+|.+|++|+|+||||.+.||+||+||++||+++ +|+       |+++.||||+|+|                    
T Consensus         8 ~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f--------------------   66 (170)
T 1qng_A            8 FDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQF--------------------   66 (170)
T ss_dssp             EEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTT--------------------
T ss_pred             EEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCC--------------------
Confidence            699999999999999999999999999999999654 665       9999999999999                    


Q ss_pred             cccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCce
Q psy13279         74 FAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVL  153 (287)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l  153 (287)
                                                                |||+||+...                            
T Consensus        67 ------------------------------------------~iQgGd~~~~----------------------------   76 (170)
T 1qng_A           67 ------------------------------------------MCQGGDITNG----------------------------   76 (170)
T ss_dssp             ------------------------------------------EEEECCTTTS----------------------------
T ss_pred             ------------------------------------------EEEcCCccCC----------------------------
Confidence                                                      8999887542                            


Q ss_pred             eccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhh
Q psy13279        154 SMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMA  233 (287)
Q Consensus       154 ~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA  233 (287)
                                                                       +|+++.+||+++|++|+..++|+++|+||||
T Consensus        77 -------------------------------------------------~g~gg~si~g~~f~dE~~~l~h~~~G~lsmA  107 (170)
T 1qng_A           77 -------------------------------------------------NGSGGESIYGRSFTDENFNMKHDQPGLLSMA  107 (170)
T ss_dssp             -------------------------------------------------SSSCCCBTTBSCBCCCCCCSCCCSTTEEEEC
T ss_pred             -------------------------------------------------CCCCCccccCCcccccccccccCCCCEEEEe
Confidence                                                             3344556777778888888899999999999


Q ss_pred             hcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        234 NSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       234 ~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      |.+|++++||||||++++||||++|||||+|++||||            +|+.+| .|..||+
T Consensus       108 n~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~v-~I~~cG~  169 (170)
T 1qng_A          108 NAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSV-VITDCGE  169 (170)
T ss_dssp             CSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCE-EEEEEEE
T ss_pred             ecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCCCCCCCCCCe-EEEecee
Confidence            9999999999999999999999999999999999995            567777 7777775

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-41  Score=296.22  Aligned_cols=143  Identities=48%  Similarity=0.799  Sum_probs=126.6

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccC---------CCceecCceeEEeccCccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE---------KGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFR   71 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~---------~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~   71 (287)
                      |||+|.+|++|+|+||||++.||+||+||++||+|+         .+| |+++.||||+|+|                  
T Consensus        24 ~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~-Y~g~~FhRVi~~f------------------   84 (192)
T 2he9_A           24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLC-YKGSTFHRVVKNF------------------   84 (192)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTT------------------
T ss_pred             EEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCe-ECCCEEEEEECCC------------------
Confidence            699999999999999999999999999999999865         457 9999999999999                  


Q ss_pred             cccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCC
Q psy13279         72 FDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPG  151 (287)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G  151 (287)
                                                                  |||+||+...                          
T Consensus        85 --------------------------------------------miQgGd~~~~--------------------------   94 (192)
T 2he9_A           85 --------------------------------------------MIQGGDFSEG--------------------------   94 (192)
T ss_dssp             --------------------------------------------EEEECCTTTS--------------------------
T ss_pred             --------------------------------------------EEEcCcccCC--------------------------
Confidence                                                        8999887542                          


Q ss_pred             ceeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhh
Q psy13279        152 VLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLS  231 (287)
Q Consensus       152 ~l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~ls  231 (287)
                                                                         +|+++.+|||..|++|++.++|+++|+||
T Consensus        95 ---------------------------------------------------~G~gg~siyg~~f~dE~~~l~h~~~G~ls  123 (192)
T 2he9_A           95 ---------------------------------------------------NGKGGESIYGGYFKDENFILKHDRAFLLS  123 (192)
T ss_dssp             ---------------------------------------------------SSSCCCCTTSSCBCCCCCCSCCCSTTEEE
T ss_pred             ---------------------------------------------------CCCCCCcccCCcccCccccCCCCCCeEEE
Confidence                                                               33445567777788888888999999999


Q ss_pred             hhhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        232 MANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       232 MA~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      |||.+|++|+||||||++++||||++|||||+|++||||             +|+.+| .|..||+
T Consensus       124 MAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v-~I~~~g~  188 (192)
T 2he9_A          124 MANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADV-RVIDCGV  188 (192)
T ss_dssp             ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCE-EEEEEEE
T ss_pred             EEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCcCCe-EEEEeEE
Confidence            999999999999999999999999999999999999994             566777 7777775

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=4.3e-41  Score=291.82  Aligned_cols=144  Identities=61%  Similarity=1.042  Sum_probs=129.1

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      ||++|+++++|+|+||||++.||+||+||++||++++||+|+++.||||+|+|                           
T Consensus        27 ~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f---------------------------   79 (184)
T 3rdd_A           27 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF---------------------------   79 (184)
T ss_dssp             EEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTT---------------------------
T ss_pred             EEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCc---------------------------
Confidence            68999999999999999999999999999999999899999999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         |||+||+...                                   
T Consensus        80 -----------------------------------~iQgGd~~~~-----------------------------------   89 (184)
T 3rdd_A           80 -----------------------------------MCQGGDFTRH-----------------------------------   89 (184)
T ss_dssp             -----------------------------------EEEECCTTTS-----------------------------------
T ss_pred             -----------------------------------EEEeCCCCCC-----------------------------------
Confidence                                               8999886542                                   


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                +|.++.++|+..|.+|++.++|+++|+|||||.+|+++
T Consensus        90 ------------------------------------------~g~gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~  127 (184)
T 3rdd_A           90 ------------------------------------------NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTN  127 (184)
T ss_dssp             ------------------------------------------SSSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCB
T ss_pred             ------------------------------------------CCCCCcccCCCcccCcccccccCCCcEEEEEeCCCCCc
Confidence                                                      23445566777788888888999999999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      +||||||++++|+||++|||||+|++||||            +|..+| .|..||+
T Consensus       128 gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~g~P~~~v-~I~~cG~  182 (184)
T 3rdd_A          128 GSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKI-TIADCGQ  182 (184)
T ss_dssp             SSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCE-EEEEEEE
T ss_pred             ccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCCCCCCcCCe-EEEeCeE
Confidence            999999999999999999999999999995            566777 8888875

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=4.4e-41  Score=290.15  Aligned_cols=144  Identities=51%  Similarity=0.832  Sum_probs=125.6

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCC-----ceecCceeEEeccCccccccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-----FGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFA   75 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g-----~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~   75 (287)
                      ||++|.+|++|+|+||||.+.||+||+||++||+++.+     ++|+++.||||+|+|                      
T Consensus        15 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f----------------------   72 (177)
T 1mzw_A           15 FDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF----------------------   72 (177)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTT----------------------
T ss_pred             EEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCC----------------------
Confidence            68999999999999999999999999999999955442     139999999999999                      


Q ss_pred             cCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceec
Q psy13279         76 AGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSM  155 (287)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~m  155 (287)
                                                              |||+||+...                              
T Consensus        73 ----------------------------------------~iQgGd~~~~------------------------------   82 (177)
T 1mzw_A           73 ----------------------------------------MIQGGDFVNG------------------------------   82 (177)
T ss_dssp             ----------------------------------------EEEECCTTTS------------------------------
T ss_pred             ----------------------------------------EEEcCCcccC------------------------------
Confidence                                                    8999887542                              


Q ss_pred             cccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhc
Q psy13279        156 ANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS  235 (287)
Q Consensus       156 a~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~  235 (287)
                                                                     +|+++.+|||++|++|+..++|+++|+|||||+
T Consensus        83 -----------------------------------------------~G~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~  115 (177)
T 1mzw_A           83 -----------------------------------------------DGTGVASIYRGPFADENFKLRHSAPGLLSMANS  115 (177)
T ss_dssp             -----------------------------------------------SSCCCCCTTSSCBCCCCCCSCCCSTTEEEECCS
T ss_pred             -----------------------------------------------CCCCCCccCCCcccCcccccccCCCCEEEEccC
Confidence                                                           334455677777888888889999999999999


Q ss_pred             CCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        236 GPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       236 ~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      +|++++||||||++++||||++|||||+|++||||             +|..+| .|..||+
T Consensus       116 gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v-~I~~cG~  176 (177)
T 1mzw_A          116 GPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPV-VISQCGE  176 (177)
T ss_dssp             STTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCE-EEEEEEE
T ss_pred             CCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCE-EEEecee
Confidence            99999999999999999999999999999999994             567777 7777775

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=7.8e-41  Score=290.54  Aligned_cols=144  Identities=50%  Similarity=0.850  Sum_probs=127.7

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||.|.++++|+|+||||.+.||+||+||++||++++|++|+|+.||||+|+|                           
T Consensus        17 ~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f---------------------------   69 (185)
T 4fru_A           17 FDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDF---------------------------   69 (185)
T ss_dssp             EEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTT---------------------------
T ss_pred             EEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCC---------------------------
Confidence            69999999999999999999999999999999988778449999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         |||+||+...                                   
T Consensus        70 -----------------------------------~iQgGd~~~~-----------------------------------   79 (185)
T 4fru_A           70 -----------------------------------MIQGGDFTRG-----------------------------------   79 (185)
T ss_dssp             -----------------------------------EEEECCTTTS-----------------------------------
T ss_pred             -----------------------------------eEEECCCCCC-----------------------------------
Confidence                                               8999887542                                   


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                +|.++.++|+..|++|+..++|+++|+|||||.+|+++
T Consensus        80 ------------------------------------------~g~gg~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~  117 (185)
T 4fru_A           80 ------------------------------------------DGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTN  117 (185)
T ss_dssp             ------------------------------------------SSSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCB
T ss_pred             ------------------------------------------CCCCCccccCCccCccccccCcCCCeEEEEeeCCCCCc
Confidence                                                      34455667777888888889999999999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      +||||||++++||||++|||||||++||||             +|+.+| .|..||+
T Consensus       118 ~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v-~I~~~g~  173 (185)
T 4fru_A          118 GSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDV-TIADCGK  173 (185)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCE-EEEEEEE
T ss_pred             ceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCE-EEEEceE
Confidence            999999999999999999999999999995             566677 7777764

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.1e-40  Score=291.12  Aligned_cols=144  Identities=50%  Similarity=0.882  Sum_probs=128.7

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||+|++|++|+|+||||++.||+||+||++||+++++|+|+++.||||+|+|                           
T Consensus        32 ~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f---------------------------   84 (193)
T 3k2c_A           32 FDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGF---------------------------   84 (193)
T ss_dssp             EEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTT---------------------------
T ss_pred             EEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCC---------------------------
Confidence            69999999999999999999999999999999988799999999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         |+|+||+...                                   
T Consensus        85 -----------------------------------~iQgGd~~~~-----------------------------------   94 (193)
T 3k2c_A           85 -----------------------------------MVQGGDYTAH-----------------------------------   94 (193)
T ss_dssp             -----------------------------------EEEECCTTTS-----------------------------------
T ss_pred             -----------------------------------EEEeCCCCCC-----------------------------------
Confidence                                               8998886542                                   


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                +++++.++|+..|++|++.++|+++|+|||||.+|+++
T Consensus        95 ------------------------------------------~g~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~  132 (193)
T 3k2c_A           95 ------------------------------------------NGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTN  132 (193)
T ss_dssp             ------------------------------------------SSSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCB
T ss_pred             ------------------------------------------CCcCCcccCCCcccccccccccCCCcEEEEEeCCCCCC
Confidence                                                      33455667777888888889999999999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc------------ccc--eeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGV--WKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~--~~~~~~~~~ge  284 (287)
                      +||||||++++||||++|||||+|++||||            +|.  .+| .|..||+
T Consensus       133 gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~g~P~~~~~v-~I~~cG~  189 (193)
T 3k2c_A          133 GSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRI-EIRDCGV  189 (193)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCCTTCCE-EEEEEEE
T ss_pred             ccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCCCcCccCccE-EEEEceE
Confidence            999999999999999999999999999995            455  667 7788775

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=4.2e-41  Score=289.05  Aligned_cols=144  Identities=49%  Similarity=0.814  Sum_probs=103.7

Q ss_pred             CceEEC-----ceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccc
Q psy13279          1 MDIKIG-----KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFA   75 (287)
Q Consensus         1 ~d~~i~-----~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~   75 (287)
                      |||+|.     .|++|+|+||||++.||+||+||++||+|++||+|+++.||||+|+|                      
T Consensus         7 ~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f----------------------   64 (172)
T 2c3b_A            7 FDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNF----------------------   64 (172)
T ss_dssp             EEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTT----------------------
T ss_pred             EEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCC----------------------
Confidence            688887     46779999999999999999999999988899999999999999999                      


Q ss_pred             cCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceec
Q psy13279         76 AGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSM  155 (287)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~m  155 (287)
                                                              |+|+||+...                              
T Consensus        65 ----------------------------------------~iQgGd~~~~------------------------------   74 (172)
T 2c3b_A           65 ----------------------------------------MIQGGDFTRG------------------------------   74 (172)
T ss_dssp             ----------------------------------------EEEECC----------------------------------
T ss_pred             ----------------------------------------EEEeCCcCCC------------------------------
Confidence                                                    8999885432                              


Q ss_pred             cccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhc
Q psy13279        156 ANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS  235 (287)
Q Consensus       156 a~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~  235 (287)
                                                                     +|+++.|||+++|++|+..++|+++|+|||||+
T Consensus        75 -----------------------------------------------~g~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~  107 (172)
T 2c3b_A           75 -----------------------------------------------NGTGGRSIYGDKFADENFSRKHDKKGILSMANA  107 (172)
T ss_dssp             -----------------------------------------------------------------CHHHHHTCEEEEC--
T ss_pred             -----------------------------------------------CCCCCcccCCCcccCcccccccCCCeEEEEeeC
Confidence                                                           234455677777888888889999999999999


Q ss_pred             CCCCCCceEEEEcCCCCCCCCCccEEEEeee--cccc--------------ccceeeeeeecCCC
Q psy13279        236 GPNTNGSQFFLCTTKQEICVKLLDLLASLDA--GWET--------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       236 ~p~s~~SQFFIt~g~~~~LD~~ytVfG~Vie--G~dv--------------~~~~~~~~~~~~ge  284 (287)
                      +|++++||||||++++||||++|||||+|++  ||||              +|..+| .|..||+
T Consensus       108 gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v-~I~~cG~  171 (172)
T 2c3b_A          108 GPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRP-KIVNCGE  171 (172)
T ss_dssp             -------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCC-EEEEEEE
T ss_pred             CCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCe-EEEeCee
Confidence            9999999999999999999999999999999  9994              566777 7777775

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=7.4e-40  Score=292.20  Aligned_cols=143  Identities=47%  Similarity=0.755  Sum_probs=125.1

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCC------ceecCceeEEeccCcccccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG------FGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDF   74 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g------~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~   74 (287)
                      ||+.|.+|++|+|+||||.+.||+||+||++||+++++      + |+++.||||||+|                     
T Consensus        64 ~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~-Y~gt~FHRVi~~F---------------------  121 (229)
T 1z81_A           64 MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVG-YKNTIFHRVIKEF---------------------  121 (229)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCS-STTEECCEEETTT---------------------
T ss_pred             EEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCce-ECCCEEEEEeCCC---------------------
Confidence            68999999999999999999999999999999976543      5 9999999999999                     


Q ss_pred             ccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCcee
Q psy13279         75 AAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLS  154 (287)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~  154 (287)
                                                               |||+||+...                             
T Consensus       122 -----------------------------------------miQgGD~~~g-----------------------------  131 (229)
T 1z81_A          122 -----------------------------------------MIQGGDFINH-----------------------------  131 (229)
T ss_dssp             -----------------------------------------EEEECCTTTS-----------------------------
T ss_pred             -----------------------------------------EEEcCCCcCC-----------------------------
Confidence                                                     8999887542                             


Q ss_pred             ccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhh
Q psy13279        155 MANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN  234 (287)
Q Consensus       155 ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~  234 (287)
                                                                      +|+++.+||+.+|++|+..++|+++|+|||||
T Consensus       132 ------------------------------------------------~G~Gg~siyg~~f~dE~~~l~h~~~G~LsMAn  163 (229)
T 1z81_A          132 ------------------------------------------------NGSGSLSIYGEKFDDENFDIKHDKEGLLSMAN  163 (229)
T ss_dssp             ------------------------------------------------SSCCCCBTTBSCCCCCCCCSCCCSTTEEEECC
T ss_pred             ------------------------------------------------CCCCCCccCCCcccccccccccCCCcEEEecc
Confidence                                                            33445567777788888888999999999999


Q ss_pred             cCCCCCCceEEEEcCCCCCCCCCccEEEEee--ecccc--------------ccceeeeeeecCCC
Q psy13279        235 SGPNTNGSQFFLCTTKQEICVKLLDLLASLD--AGWET--------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       235 ~~p~s~~SQFFIt~g~~~~LD~~ytVfG~Vi--eG~dv--------------~~~~~~~~~~~~ge  284 (287)
                      ++|++++||||||++++||||++|||||||+  +||||              +|+.+| .|..||+
T Consensus       164 ~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V-~I~~cG~  228 (229)
T 1z81_A          164 SGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPI-NVVECGE  228 (229)
T ss_dssp             SSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCE-EEEEEEE
T ss_pred             CCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCe-EEEeCee
Confidence            9999999999999999999999999999999  99994              455667 7777775

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=3.7e-39  Score=273.91  Aligned_cols=125  Identities=42%  Similarity=0.645  Sum_probs=112.2

Q ss_pred             eEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCcc
Q psy13279          3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTR   82 (287)
Q Consensus         3 ~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (287)
                      ..+++|++|+|+||||++.||+||+||++||  +++| |+++.||||+|+|                             
T Consensus         7 ~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f-----------------------------   54 (160)
T 2fu0_A            7 SAIIYTTMGDIHISLFYKECKKTVQNFSVHS--INGY-YNNCIFHRVIKHF-----------------------------   54 (160)
T ss_dssp             EEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTT-----------------------------
T ss_pred             EEEEEecCccEEEEEeCCCChHHHHHHHHHh--ccCc-cCCCEEEEEECCC-----------------------------
Confidence            4677999999999999999999999999999  8999 9999999999999                             


Q ss_pred             CCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCC
Q psy13279         83 HSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNT  162 (287)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s  162 (287)
                                                       |||+||+..                                      
T Consensus        55 ---------------------------------~iQgGd~~~--------------------------------------   63 (160)
T 2fu0_A           55 ---------------------------------MVQTGDPSG--------------------------------------   63 (160)
T ss_dssp             ---------------------------------EEEECCTTS--------------------------------------
T ss_pred             ---------------------------------EEEeCCcCC--------------------------------------
Confidence                                             899988642                                      


Q ss_pred             CCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcCCCCCC
Q psy13279        163 NGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNG  241 (287)
Q Consensus       163 ~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~p~s~~  241 (287)
                                                              +|+++.++||.+|++|+. .++|+++|+|||||.+|++++
T Consensus        64 ----------------------------------------~g~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~  103 (160)
T 2fu0_A           64 ----------------------------------------DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNG  103 (160)
T ss_dssp             ----------------------------------------SSSCCCCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBC
T ss_pred             ----------------------------------------CCCCCCcccCCCccccccCCcccCCceEEEEecCCCCCcc
Confidence                                                    233445677777888876 588888999999999999999


Q ss_pred             ceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        242 SQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       242 SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||||||++++||||++|||||+|++||||
T Consensus       104 SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dv  132 (160)
T 2fu0_A          104 SQFFITTVPCPWLDFKHTVFGKVTQGSKI  132 (160)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             cEEEEECCCCCccCCCcEEEEEEEcCHHH
Confidence            99999999999999999999999999996

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=5e-39  Score=274.67  Aligned_cols=125  Identities=43%  Similarity=0.714  Sum_probs=111.9

Q ss_pred             eEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCcc
Q psy13279          3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTR   82 (287)
Q Consensus         3 ~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (287)
                      ..++.|++|+|+||||++.||+||+||++||  +++| |+++.||||+|+|                             
T Consensus        13 ~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f-----------------------------   60 (166)
T 2x7k_A           13 NVYLETSMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDF-----------------------------   60 (166)
T ss_dssp             EEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HHTT-TTTEECCEEETTT-----------------------------
T ss_pred             EEEEEeCCCcEEEEEccCCCCHHHHHHHHHH--hcCC-CCCCEEEEEECCC-----------------------------
Confidence            4567899999999999999999999999999  8999 9999999999999                             


Q ss_pred             CCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCC
Q psy13279         83 HSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNT  162 (287)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s  162 (287)
                                                       |+|+||+..                                      
T Consensus        61 ---------------------------------~iQgGd~~~--------------------------------------   69 (166)
T 2x7k_A           61 ---------------------------------MIQGGDPTG--------------------------------------   69 (166)
T ss_dssp             ---------------------------------EEEECCTTS--------------------------------------
T ss_pred             ---------------------------------EEEcCCCCC--------------------------------------
Confidence                                             899988653                                      


Q ss_pred             CCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCC
Q psy13279        163 NGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNG  241 (287)
Q Consensus       163 ~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~  241 (287)
                                                              +|.++.++|+..|++|. ..++|.++|+|||||.+|++++
T Consensus        70 ----------------------------------------~g~gg~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~g  109 (166)
T 2x7k_A           70 ----------------------------------------TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNG  109 (166)
T ss_dssp             ----------------------------------------SSSCCCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBC
T ss_pred             ----------------------------------------CCCCCCccCCCccccccccccCCCCCeEEEEeeCCCCCcc
Confidence                                                    23345566777788886 4788889999999999999999


Q ss_pred             ceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        242 SQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       242 SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||||||++++||||++|||||+|++||||
T Consensus       110 SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dv  138 (166)
T 2x7k_A          110 SQFFVTLAPTQWLDGKHTIFGRVCQGIGM  138 (166)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             ceEEEECCCCCccCCCeeEEEEEEcCHHH
Confidence            99999999999999999999999999996

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=7.5e-39  Score=277.90  Aligned_cols=125  Identities=39%  Similarity=0.653  Sum_probs=109.5

Q ss_pred             ceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCc
Q psy13279          2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRT   81 (287)
Q Consensus         2 d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (287)
                      ++.+ .|++|+|+||||++.||+||+||++||  +++| |+++.||||+|+|                            
T Consensus        18 ~v~i-~t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f----------------------------   65 (185)
T 2poe_A           18 GVRI-ITNYGDLKFELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIKGF----------------------------   65 (185)
T ss_dssp             EEEE-EETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTEEEEEECTTS----------------------------
T ss_pred             EEEE-EecCccEEEEEeCCCCcHHHHHHHHHh--ccCC-CCCCEEEEEECCC----------------------------
Confidence            3444 499999999999999999999999999  8999 9999999999999                            


Q ss_pred             cCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCC
Q psy13279         82 RHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPN  161 (287)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~  161 (287)
                                                        |||+||+..                                     
T Consensus        66 ----------------------------------~iQgGd~~~-------------------------------------   74 (185)
T 2poe_A           66 ----------------------------------IIQGGDPTG-------------------------------------   74 (185)
T ss_dssp             ----------------------------------EEEEEETTS-------------------------------------
T ss_pred             ----------------------------------EEEcCCCCC-------------------------------------
Confidence                                              888887642                                     


Q ss_pred             CCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcC----
Q psy13279        162 TNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSG----  236 (287)
Q Consensus       162 s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~----  236 (287)
                                                               +|+++.++||.+|++|+ ..++|+++|+|||||++    
T Consensus        75 -----------------------------------------~g~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~g~~~~  113 (185)
T 2poe_A           75 -----------------------------------------TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKK  113 (185)
T ss_dssp             -----------------------------------------SSSCCCBTTBSCBCCCCCTTSCCCSTTEEEECCSCC-CC
T ss_pred             -----------------------------------------CCCCCCccCCCcccccccCCCccCCCeEEEEecCCCCCC
Confidence                                                     23344556677777776 67788889999999998    


Q ss_pred             CCCCCceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        237 PNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       237 p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      |++++||||||++++||||++|||||+|++||||
T Consensus       114 p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdv  147 (185)
T 2poe_A          114 PNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFET  147 (185)
T ss_dssp             CSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             CCCccceEEEECCCCCccCCCeeEEEEEeCCHHH
Confidence            9999999999999999999999999999999995

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=1.9e-38  Score=269.90  Aligned_cols=123  Identities=47%  Similarity=0.726  Sum_probs=109.9

Q ss_pred             ECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCC
Q psy13279          5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHS   84 (287)
Q Consensus         5 i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (287)
                      +.+|++|+|+||||++.||+||+||++||  +.+| |+++.||||+|+|                               
T Consensus         4 ~~~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f-------------------------------   49 (161)
T 2ok3_A            4 TLHTDVGDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGF-------------------------------   49 (161)
T ss_dssp             EEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTT-------------------------------
T ss_pred             EEEeCCccEEEEEcCCCCcHHHHHHHHHh--hhcc-cCCCEEEEEECCC-------------------------------
Confidence            44699999999999999999999999999  8899 9999999999999                               


Q ss_pred             CCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCC
Q psy13279         85 FPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNG  164 (287)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~  164 (287)
                                                     |+|+||+..                                        
T Consensus        50 -------------------------------~iQgGd~~~----------------------------------------   58 (161)
T 2ok3_A           50 -------------------------------MVQTGDPTG----------------------------------------   58 (161)
T ss_dssp             -------------------------------EEEECCTTS----------------------------------------
T ss_pred             -------------------------------EEecCCCCC----------------------------------------
Confidence                                           899888653                                        


Q ss_pred             CceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcCCCCCCce
Q psy13279        165 SQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQ  243 (287)
Q Consensus       165 SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~p~s~~SQ  243 (287)
                                                            +|+++.++|+.+|++|.. .++|+++|+|||||.+|++++||
T Consensus        59 --------------------------------------~g~gg~si~g~~~~dE~~~~l~h~~~G~lsma~~gp~s~~SQ  100 (161)
T 2ok3_A           59 --------------------------------------TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQ  100 (161)
T ss_dssp             --------------------------------------SSSCCCCTTSSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSC
T ss_pred             --------------------------------------CCCCCCcccCCccccccCcCcCcCCCeEEEEecCCCCCcceE
Confidence                                                  223445667777888864 67898999999999999999999


Q ss_pred             EEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        244 FFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       244 FFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||||++++||||++|||||+|++||||
T Consensus       101 FfI~~~~~~~Ldg~~tvFG~Vv~G~dv  127 (161)
T 2ok3_A          101 FFITYGKQPHLDMKYTVFGKVIDGLET  127 (161)
T ss_dssp             EEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             EEEEcCCCCccCCCEeEEEEEeCCHHH
Confidence            999999999999999999999999996

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.6e-38  Score=273.88  Aligned_cols=126  Identities=42%  Similarity=0.646  Sum_probs=113.4

Q ss_pred             ceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCc
Q psy13279          2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRT   81 (287)
Q Consensus         2 d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (287)
                      +..+++|++|+|+||||.+.||+||+||++||  +.+| |+++.||||+|+|                            
T Consensus        22 ~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f----------------------------   70 (176)
T 2a2n_A           22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGF----------------------------   70 (176)
T ss_dssp             SEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTT----------------------------
T ss_pred             CEEEEEecCccEEEEEeCCCChHHHHHHHHHh--hcCc-cCCCEEEEEECCc----------------------------
Confidence            46788999999999999999999999999999  8999 9999999999999                            


Q ss_pred             cCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCC
Q psy13279         82 RHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPN  161 (287)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~  161 (287)
                                                        |||+||+..                                     
T Consensus        71 ----------------------------------~iQgGd~~~-------------------------------------   79 (176)
T 2a2n_A           71 ----------------------------------MIQTGDPTG-------------------------------------   79 (176)
T ss_dssp             ----------------------------------EEEECCTTS-------------------------------------
T ss_pred             ----------------------------------EEEccCCCC-------------------------------------
Confidence                                              899888642                                     


Q ss_pred             CCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcCCCCC
Q psy13279        162 TNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       162 s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                               +|+++.++||.+|++|+. .++|+++|+|||||.+|+++
T Consensus        80 -----------------------------------------~g~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~  118 (176)
T 2a2n_A           80 -----------------------------------------TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTN  118 (176)
T ss_dssp             -----------------------------------------SSSCCCCTTSSCBCCCCCTTCCSCSSSEEEECCSSTTCB
T ss_pred             -----------------------------------------CCCCCCcccCCccccccccccccCCceEEEEEeCCCCCc
Confidence                                                     233455677777888876 58888899999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      +||||||++++||||++|||||+|++||||
T Consensus       119 gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdv  148 (176)
T 2a2n_A          119 GSQFFITVVPTPWLDNKHTVFGRVTKGMEV  148 (176)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             ccEEEEECCCCCccCCCeeEEEEEeCCHHH
Confidence            999999999999999999999999999996

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=9.7e-39  Score=286.35  Aligned_cols=146  Identities=25%  Similarity=0.430  Sum_probs=119.4

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccC-----------C----C--ceecCceeEEeccCccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----------K----G--FGYQGSSFHRIIPDFVSFMTKRQSL   63 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~-----------~----g--~~Y~g~~f~rvi~~~~~~~g~~~~~   63 (287)
                      |||+|.+|++|+|+||||.+.||+||+||++||+++           +    |  |+|+|+.|||||++|          
T Consensus        19 ~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~F----------   88 (234)
T 2ose_A           19 MDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNN----------   88 (234)
T ss_dssp             EEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTT----------
T ss_pred             EEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCC----------
Confidence            689999999999999999999999999999999876           4    5  779999999999999          


Q ss_pred             cccccccccccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcc-cccCc
Q psy13279         64 KSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNK-FEDEN  142 (287)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~-~~~e~  142 (287)
                                                                          ||||||+...+|+|+.++|+.. ++.| 
T Consensus        89 ----------------------------------------------------miQgGd~~~g~G~Gg~siyg~~~~p~~-  115 (234)
T 2ose_A           89 ----------------------------------------------------YIVSGDIYNSNGSSAGTVYCDEPIPPV-  115 (234)
T ss_dssp             ----------------------------------------------------EEEECCCC----CCCCCTTTTCCBCCC-
T ss_pred             ----------------------------------------------------EEEcCCccCCCCCCCccccCCccCccc-
Confidence                                                                9999997766777766555443 1000 


Q ss_pred             ccccccCCCceeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccccc
Q psy13279        143 FVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFIL  222 (287)
Q Consensus       143 ~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~  222 (287)
                                                                                              |+  ++.+
T Consensus       116 ------------------------------------------------------------------------f~--~~~l  121 (234)
T 2ose_A          116 ------------------------------------------------------------------------FG--DYFY  121 (234)
T ss_dssp             ------------------------------------------------------------------------CC--SCCC
T ss_pred             ------------------------------------------------------------------------cc--CcCc
Confidence                                                                                    22  2357


Q ss_pred             ccCchhhhhhhh----cCCCCCCceEEEEcCC------CCCCCCCccEEEEeeecccc-------------ccceeeeee
Q psy13279        223 KHTGPGVLSMAN----SGPNTNGSQFFLCTTK------QEICVKLLDLLASLDAGWET-------------RGVWKCHQW  279 (287)
Q Consensus       223 ~h~~~G~lsMA~----~~p~s~~SQFFIt~g~------~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~  279 (287)
                      +|+++|+|||||    .+|++++||||||+++      +||||++|||||+|++||||             +|+.+| .|
T Consensus       122 ~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~~~t~~~~~P~~~V-~I  200 (234)
T 2ose_A          122 PHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTF-SI  200 (234)
T ss_dssp             CSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHHHHHTCCCTTCCCCCE-EE
T ss_pred             cCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCccCCE-EE
Confidence            888999999999    8899999999999999      99999999999999999995             566677 77


Q ss_pred             ecCCC
Q psy13279        280 NGCGE  284 (287)
Q Consensus       280 ~~~ge  284 (287)
                      ..|+.
T Consensus       201 ~~~~~  205 (234)
T 2ose_A          201 GKCGA  205 (234)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77764

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=2.7e-38  Score=276.57  Aligned_cols=125  Identities=43%  Similarity=0.724  Sum_probs=112.2

Q ss_pred             eEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCcc
Q psy13279          3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTR   82 (287)
Q Consensus         3 ~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (287)
                      ..++.|++|+|+||||++.||+||+||++||  ++|| |+|+.||||+|+|                             
T Consensus        21 ~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~--~~g~-Ydg~~FhRVi~~f-----------------------------   68 (197)
T 1zkc_A           21 YVRLHTNKGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNF-----------------------------   68 (197)
T ss_dssp             EEEEEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTT-----------------------------
T ss_pred             EEEEEeCCccEEEEEcCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCC-----------------------------
Confidence            4677999999999999999999999999999  8999 9999999999999                             


Q ss_pred             CCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCC
Q psy13279         83 HSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNT  162 (287)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s  162 (287)
                                                       |||+||+..                                      
T Consensus        69 ---------------------------------~iQgGd~~~--------------------------------------   77 (197)
T 1zkc_A           69 ---------------------------------VIQGGDPTG--------------------------------------   77 (197)
T ss_dssp             ---------------------------------EEEECCTTS--------------------------------------
T ss_pred             ---------------------------------EEEcCCCCC--------------------------------------
Confidence                                             899888643                                      


Q ss_pred             CCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchhhhhhhhcCCCCCC
Q psy13279        163 NGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNG  241 (287)
Q Consensus       163 ~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G~lsMA~~~p~s~~  241 (287)
                                                              +|.|+.++||.+|++| +..++|+++|+|||||.+|++++
T Consensus        78 ----------------------------------------~g~Gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~gp~sng  117 (197)
T 1zkc_A           78 ----------------------------------------TGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNR  117 (197)
T ss_dssp             ----------------------------------------SSSCCCBTTBSCBCCCCCTTCCSCSTTEEEECCSSTTCBC
T ss_pred             ----------------------------------------CCCCCCccCCCccccccCcCcCCCCceEEEEecCCCCCcc
Confidence                                                    2334556677778888 46788989999999999999999


Q ss_pred             ceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        242 SQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       242 SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||||||++++||||++|||||+|++||||
T Consensus       118 SQFFIt~~~~~~LDg~~tVFG~Vv~Gmdv  146 (197)
T 1zkc_A          118 SQFFITFRSCAYLDKKHTIFGRVVGGFDV  146 (197)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             cEEEEEcCCCCccCCCccEEEEEEcCHHH
Confidence            99999999999999999999999999995

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=2.6e-38  Score=276.60  Aligned_cols=124  Identities=44%  Similarity=0.718  Sum_probs=111.1

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      .++.|++|+|+||||++.||+||+||++||  ++|| |+|+.||||+|+|                              
T Consensus        41 V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~--~~g~-Y~g~~FhRVi~~f------------------------------   87 (196)
T 2b71_A           41 ITIYTNLGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNF------------------------------   87 (196)
T ss_dssp             EEEEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTT------------------------------
T ss_pred             EEEEeCCCCEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCCEEEEEeCCc------------------------------
Confidence            567899999999999999999999999999  8999 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      |||+||+..                                       
T Consensus        88 --------------------------------~iQgGd~~~---------------------------------------   96 (196)
T 2b71_A           88 --------------------------------VIQGGDPTG---------------------------------------   96 (196)
T ss_dssp             --------------------------------EEEEEETTS---------------------------------------
T ss_pred             --------------------------------EEEcCCCCC---------------------------------------
Confidence                                            888887642                                       


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~S  242 (287)
                                                             +|+++.++||.+|++|. ..++|+++|+|||||.+|++++|
T Consensus        97 ---------------------------------------~g~gg~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gS  137 (196)
T 2b71_A           97 ---------------------------------------TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSS  137 (196)
T ss_dssp             ---------------------------------------SSSCCCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSS
T ss_pred             ---------------------------------------CCCCCCccCCCcccccccCCcCcCCCeEEEEccCCCCCccc
Confidence                                                   23445566777788884 57889899999999999999999


Q ss_pred             eEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        243 QFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       243 QFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      |||||++++||||++|||||+|++||||
T Consensus       138 QFFIt~~~~~~LDg~~tVFG~Vv~Gmdv  165 (196)
T 2b71_A          138 QFFITLAPLPHLDGKHTIFARVSKNMTC  165 (196)
T ss_dssp             CEEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             EEEEECCCCCccCCCEeEEEEEecCHHH
Confidence            9999999999999999999999999995

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=8.4e-38  Score=295.82  Aligned_cols=131  Identities=55%  Similarity=0.900  Sum_probs=118.1

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCc--------eecCceeEEeccCcccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF--------GYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRF   72 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~--------~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~   72 (287)
                      ||+.|++++.|+|+||||++.||+||+||++||++++++        .|+|+.||||||+|                   
T Consensus        20 ~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f-------------------   80 (370)
T 1ihg_A           20 FDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKF-------------------   80 (370)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTT-------------------
T ss_pred             EEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCc-------------------
Confidence            689999999999999999999999999999999875542        29999999999999                   


Q ss_pred             ccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCc
Q psy13279         73 DFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGV  152 (287)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~  152 (287)
                                                                 ||||||++..                           
T Consensus        81 -------------------------------------------~~q~Gd~~~~---------------------------   90 (370)
T 1ihg_A           81 -------------------------------------------MIQGGDFSNQ---------------------------   90 (370)
T ss_dssp             -------------------------------------------EEEECCTTTS---------------------------
T ss_pred             -------------------------------------------EEECCCCCCC---------------------------
Confidence                                                       8998887642                           


Q ss_pred             eeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhh
Q psy13279        153 LSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSM  232 (287)
Q Consensus       153 l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsM  232 (287)
                                                                        +|+|+.+|||.+|.+|++.++|+++|+|||
T Consensus        91 --------------------------------------------------~g~g~~~~~~~~~~~e~~~~~~~~~g~l~m  120 (370)
T 1ihg_A           91 --------------------------------------------------NGTGGESIYGEKFEDENFHYKHDKEGLLSM  120 (370)
T ss_dssp             --------------------------------------------------SSSCCCBTTBSCBCCCCCCBCCCSTTEEEE
T ss_pred             --------------------------------------------------CCCCCCCCCCCCcCCCcCCcCCCCCeEEEE
Confidence                                                              345566777888888888889999999999


Q ss_pred             hhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        233 ANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       233 A~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||.+|+|++||||||++++||||++|||||+|++||+|
T Consensus       121 a~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v  158 (370)
T 1ihg_A          121 ANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGV  158 (370)
T ss_dssp             CCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             eeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHH
Confidence            99999999999999999999999999999999999995

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=6.4e-38  Score=275.44  Aligned_cols=132  Identities=31%  Similarity=0.445  Sum_probs=109.0

Q ss_pred             eEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCcc
Q psy13279          3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTR   82 (287)
Q Consensus         3 ~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (287)
                      ..++.|+.|+|+||||++.||+||+||++||  +.|| |+|+.||||+|+|                             
T Consensus         8 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f-----------------------------   55 (201)
T 3bo7_A            8 YLRIVTTQGSLNIELHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNF-----------------------------   55 (201)
T ss_dssp             EEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTT-----------------------------
T ss_pred             EEEEEeCCCCEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCCEEEEeeCCC-----------------------------
Confidence            3567899999999999999999999999999  8999 9999999999999                             


Q ss_pred             CCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeC-----CCCCCCCCCCccccCcccccCcccccccCCCceeccc
Q psy13279         83 HSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG-----DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMAN  157 (287)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g-----~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~  157 (287)
                                                       |||+|     |+.. +|+|+.++|...                    
T Consensus        56 ---------------------------------~iQgG~~~~~Dp~~-~g~gg~si~~~~--------------------   81 (201)
T 3bo7_A           56 ---------------------------------MIQGGRAELRQPSK-KKEVQQSPRSIS--------------------   81 (201)
T ss_dssp             ---------------------------------EEEECCGGGCCC--------CCSSCCC--------------------
T ss_pred             ---------------------------------EEEcCcccccCCCC-CCCCCccccccc--------------------
Confidence                                             99999     7653 455544333110                    


Q ss_pred             cCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchhhhhhhhcC
Q psy13279        158 SGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSG  236 (287)
Q Consensus       158 ~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G~lsMA~~~  236 (287)
                                                           + +         .   .+.+|.+| +..++|+++|+|||||++
T Consensus        82 -------------------------------------~-~---------~---~g~~f~dE~~~~l~h~~~G~lsmA~~g  111 (201)
T 3bo7_A           82 -------------------------------------G-F---------P---GGAPFEDEFDNRLVHQGIGVLSMANDG  111 (201)
T ss_dssp             -------------------------------------S-S---------T---TCCCBCCCCCTTCCCCSTTEEEECCSS
T ss_pred             -------------------------------------c-c---------c---CCCcccCcccCCCCcCCCcEEEEeeCC
Confidence                                                 0 0         0   15568888 478899999999999999


Q ss_pred             CCCCCceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        237 PNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       237 p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      |++++||||||++++||||++|||||+|++||||
T Consensus       112 p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdv  145 (201)
T 3bo7_A          112 KHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDV  145 (201)
T ss_dssp             TTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             CCCcccEEEEECCCCcccCCCceEEEEEecCHHH
Confidence            9999999999999999999999999999999995

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=5.6e-38  Score=275.59  Aligned_cols=125  Identities=43%  Similarity=0.714  Sum_probs=111.7

Q ss_pred             eEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCcc
Q psy13279          3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTR   82 (287)
Q Consensus         3 ~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (287)
                      ..++.|++|+|+||||.+.||+||+||++||  +++| |+++.||||+|+|                             
T Consensus        13 ~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~--~~g~-Ydg~~FhRVi~~F-----------------------------   60 (203)
T 2k7n_A           13 NVYLETSMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDF-----------------------------   60 (203)
T ss_dssp             EEEEEESSCEEEEEECTTTCTTHHHHHHHHH--HHTC-GGGCEEEEEETTT-----------------------------
T ss_pred             EEEEEeCCCcEEEEEccCCCcHHHHHHHHHH--hcCc-cCCCEEEEEeCCc-----------------------------
Confidence            4577899999999999999999999999999  8899 9999999999999                             


Q ss_pred             CCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCC
Q psy13279         83 HSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNT  162 (287)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s  162 (287)
                                                       |||+||+..                                      
T Consensus        61 ---------------------------------~iQgGd~~~--------------------------------------   69 (203)
T 2k7n_A           61 ---------------------------------MIQGGDPTG--------------------------------------   69 (203)
T ss_dssp             ---------------------------------EEEEECSSS--------------------------------------
T ss_pred             ---------------------------------EEEcCCCCC--------------------------------------
Confidence                                             888888643                                      


Q ss_pred             CCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCC
Q psy13279        163 NGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNG  241 (287)
Q Consensus       163 ~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~  241 (287)
                                                              ++.++.++|+..|++|+ ..++|.++|+|||||.+||+++
T Consensus        70 ----------------------------------------~g~gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsng  109 (203)
T 2k7n_A           70 ----------------------------------------TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNG  109 (203)
T ss_dssp             ----------------------------------------SSSCCCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEE
T ss_pred             ----------------------------------------CCCCCCccCCCcccccccccccCCCCeEEEEeeCCCCCcc
Confidence                                                    22344566777788886 4788989999999999999999


Q ss_pred             ceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        242 SQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       242 SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||||||++++||||++|||||||++||||
T Consensus       110 SQFFIt~~~~~~LDg~~tVFG~VveGmdv  138 (203)
T 2k7n_A          110 SQFFVTLAPTQWLDGKHTIFGRVCQGIGM  138 (203)
T ss_dssp             EEEEEESSCCCSSTTTSCEEEEEESCHHH
T ss_pred             cEEEEEcCCCCccCCCeeEEEEEEcCHHH
Confidence            99999999999999999999999999995

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=2.4e-37  Score=269.57  Aligned_cols=123  Identities=38%  Similarity=0.566  Sum_probs=107.9

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccC-------------CCceecCceeEEeccCcccccccccccccccccc
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-------------KGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKF   70 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~-------------~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~   70 (287)
                      .++.|++|+|+||||.+.||+||+||++||+|+             .+| |+|+.||||+|+|                 
T Consensus        26 v~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~-Y~g~~FhRVi~~f-----------------   87 (191)
T 1w74_A           26 ATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPF-YDGAVFHRVIQGF-----------------   87 (191)
T ss_dssp             EEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCS-STTEEEEEEETTT-----------------
T ss_pred             EEEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCc-cCCCEEEEEeCCC-----------------
Confidence            567899999999999999999999999999774             367 9999999999999                 


Q ss_pred             ccccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCC
Q psy13279         71 RFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGP  150 (287)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~  150 (287)
                                                                   |||+||+.. +|+|                     
T Consensus        88 ---------------------------------------------miQgGd~~g-~G~g---------------------  100 (191)
T 1w74_A           88 ---------------------------------------------MIQGGDPTG-TGRG---------------------  100 (191)
T ss_dssp             ---------------------------------------------EEEECCTTS-SSSC---------------------
T ss_pred             ---------------------------------------------EEecCCCCC-CCCC---------------------
Confidence                                                         999999642 2221                     


Q ss_pred             CceeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchhh
Q psy13279        151 GVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGV  229 (287)
Q Consensus       151 G~l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G~  229 (287)
                                                                              +   ||+.|++| +..++|+++|+
T Consensus       101 --------------------------------------------------------g---~g~~f~dE~~~~l~h~~~G~  121 (191)
T 1w74_A          101 --------------------------------------------------------G---PGYKFADEFHPELQFDKPYL  121 (191)
T ss_dssp             --------------------------------------------------------C---SSCCBCCCCCTTCCSCSSSE
T ss_pred             --------------------------------------------------------C---CCCccccccccCCCcCCCcE
Confidence                                                                    1   25567788 46788999999


Q ss_pred             hhhhhcCCCCCCceEEEEcCCCCCCCCCccEEEEeee--cccc
Q psy13279        230 LSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDA--GWET  270 (287)
Q Consensus       230 lsMA~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~Vie--G~dv  270 (287)
                      |||||++||+|+||||||++++||||++|||||||++  ||||
T Consensus       122 lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdv  164 (191)
T 1w74_A          122 LAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRV  164 (191)
T ss_dssp             EEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHH
T ss_pred             EEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHH
Confidence            9999999999999999999999999999999999999  9995

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=3.6e-37  Score=267.27  Aligned_cols=126  Identities=35%  Similarity=0.635  Sum_probs=110.7

Q ss_pred             eEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCcc
Q psy13279          3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTR   82 (287)
Q Consensus         3 ~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (287)
                      ..++.|++|+|+||||++.||+||+||++||  +.+| |+++.||||+|+|                             
T Consensus        26 ~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~--~~g~-Y~g~~FhRvi~~f-----------------------------   73 (185)
T 2hq6_A           26 KVLLKTTAGDIDIELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGF-----------------------------   73 (185)
T ss_dssp             EEEEEETTEEEEEEEBTTTCHHHHHHHHHHH--HTTT-TTTEECCEEETTT-----------------------------
T ss_pred             EEEEEeCCccEEEEEeCCCCcHHHHHHHHHh--hcCc-cCCCEEEEEECCC-----------------------------
Confidence            3567899999999999999999999999999  8899 9999999999999                             


Q ss_pred             CCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCC
Q psy13279         83 HSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNT  162 (287)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s  162 (287)
                                                       |||+||+..                                      
T Consensus        74 ---------------------------------~iQgGd~~~--------------------------------------   82 (185)
T 2hq6_A           74 ---------------------------------IVQGGDPTG--------------------------------------   82 (185)
T ss_dssp             ---------------------------------EEEECCTTS--------------------------------------
T ss_pred             ---------------------------------EEEcCCCCC--------------------------------------
Confidence                                             899988642                                      


Q ss_pred             CCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcCCCCCC
Q psy13279        163 NGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNG  241 (287)
Q Consensus       163 ~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~p~s~~  241 (287)
                                                              +|.++.++||.+|++|.. .++|+++|+|||||++|++++
T Consensus        83 ----------------------------------------~g~gg~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~g  122 (185)
T 2hq6_A           83 ----------------------------------------TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNG  122 (185)
T ss_dssp             ----------------------------------------SSSCCCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBC
T ss_pred             ----------------------------------------CCCCCCcccCCccccccccCcccCCCeEEEEccCCCCCcc
Confidence                                                    233445667777888864 678889999999999999999


Q ss_pred             ceEEEEcCCCCCCCCCccEEEEeeecccccc
Q psy13279        242 SQFFLCTTKQEICVKLLDLLASLDAGWETRG  272 (287)
Q Consensus       242 SQFFIt~g~~~~LD~~ytVfG~VieG~dv~~  272 (287)
                      ||||||++++||||++|||||||+ ||++..
T Consensus       123 SQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~  152 (185)
T 2hq6_A          123 SQFFFTLGRADELNNKHTIFGKVT-GDTVYN  152 (185)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEC-GGGHHH
T ss_pred             ceEEEECCCCCccCCCceEEEEEE-eCeeeh
Confidence            999999999999999999999999 887643

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=7.8e-36  Score=267.09  Aligned_cols=125  Identities=31%  Similarity=0.570  Sum_probs=100.2

Q ss_pred             eEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCcc
Q psy13279          3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTR   82 (287)
Q Consensus         3 ~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (287)
                      ..++.|++|+|+||||.+.||+||+||++||  +.|| |+++.||||+|+|                             
T Consensus        23 ~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~--~~g~-Ydgt~FhRVi~~F-----------------------------   70 (232)
T 3bkp_A           23 KVVLHTSLGDLDVELWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDF-----------------------------   70 (232)
T ss_dssp             EEEEEETTEEEEEEEBTTTCHHHHHHHHHHH--HHTT-TTTCBEEEEETTT-----------------------------
T ss_pred             EEEEEECCCcEEEEEcCCCCcHHHHHHHHHh--hcCc-cCCCEEEEEeCCC-----------------------------
Confidence            3567899999999999999999999999999  8899 9999999999999                             


Q ss_pred             CCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCcccc--CcccccCcccccccCCCceeccccCC
Q psy13279         83 HSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIY--GNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~--~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                       |||+||+.. +|+|+.++|  +..+++|+.                 
T Consensus        71 ---------------------------------miQgGdp~~-~G~Gg~si~~~g~~f~dE~~-----------------   99 (232)
T 3bkp_A           71 ---------------------------------IVQGGDPTG-TGRGGADTTFDGKPFDVETH-----------------   99 (232)
T ss_dssp             ---------------------------------EEEECCTTS-SSSCCCCCTTTTCCBCCCCC-----------------
T ss_pred             ---------------------------------EEEcCCCCC-CCCCCCccccCCCccCCccc-----------------
Confidence                                             999999864 555555555  444444432                 


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCC---
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGP---  237 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p---  237 (287)
                                                                                 ..++|+++|+|||||.++   
T Consensus       100 -----------------------------------------------------------~~l~h~~~G~lsMA~~g~~~~  120 (232)
T 3bkp_A          100 -----------------------------------------------------------PRLKFRYRGLVGVANLGRSSK  120 (232)
T ss_dssp             -----------------------------------------------------------TTCCCCSTTEEEECCCC----
T ss_pred             -----------------------------------------------------------cCcCcCCCeEEEEeccCCccc
Confidence                                                                       234455555555555553   


Q ss_pred             -----------CCCCceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        238 -----------NTNGSQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       238 -----------~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                                 ++++||||||++++||||++|||||+|+ ||++
T Consensus       121 ~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v  163 (232)
T 3bkp_A          121 DAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTL  163 (232)
T ss_dssp             ------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGH
T ss_pred             ccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCch
Confidence                       7999999999999999999999999999 8875

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=1.6e-35  Score=253.02  Aligned_cols=123  Identities=24%  Similarity=0.410  Sum_probs=105.8

Q ss_pred             eEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCcc
Q psy13279          3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTR   82 (287)
Q Consensus         3 ~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (287)
                      ..++.|++|+|+||||++.||+||+||++||  +++| |+++.||||+|+|                             
T Consensus         6 ~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f-----------------------------   53 (166)
T 1v9t_A            6 HVLLTTSAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGF-----------------------------   53 (166)
T ss_dssp             EEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTT-----------------------------
T ss_pred             EEEEEeCCccEEEEEcCCCCcHHHHHHHHHh--ccCC-CCCCEEEEEECCc-----------------------------
Confidence            3567899999999999999999999999999  8999 9999999999999                             


Q ss_pred             CCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCC
Q psy13279         83 HSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNT  162 (287)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s  162 (287)
                                                       |||+||+....+ +                                 
T Consensus        54 ---------------------------------~iQgGd~~~~~~-~---------------------------------   66 (166)
T 1v9t_A           54 ---------------------------------MIQGGGFTEQMQ-Q---------------------------------   66 (166)
T ss_dssp             ---------------------------------EEEESSBCTTCC-B---------------------------------
T ss_pred             ---------------------------------EEEcCCcCcCCC-C---------------------------------
Confidence                                             999999764110 0                                 


Q ss_pred             CCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhc-CCCCCC
Q psy13279        163 NGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS-GPNTNG  241 (287)
Q Consensus       163 ~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~-~p~s~~  241 (287)
                                                                    +.++.+|.+|....+++++|+|||||+ +|||++
T Consensus        67 ----------------------------------------------~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~g  100 (166)
T 1v9t_A           67 ----------------------------------------------KKPNPPIKNEADNGLRNTRGTIAMARTADKDSAT  100 (166)
T ss_dssp             ----------------------------------------------CCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBC
T ss_pred             ----------------------------------------------CCCCCcccccccccccCCceEEEEeecCCCCCcc
Confidence                                                          011344777766556778999999997 499999


Q ss_pred             ceEEEEcCCCCCCCCC-----ccEEEEeeecccc
Q psy13279        242 SQFFLCTTKQEICVKL-----LDLLASLDAGWET  270 (287)
Q Consensus       242 SQFFIt~g~~~~LD~~-----ytVfG~VieG~dv  270 (287)
                      ||||||++++||||++     |||||+|++||||
T Consensus       101 SQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dv  134 (166)
T 1v9t_A          101 SQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDV  134 (166)
T ss_dssp             SCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHH
T ss_pred             ceEEEEeCCccccCCccCcCCeeEEEEEecCHHH
Confidence            9999999999999998     9999999999996

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=8.6e-36  Score=254.18  Aligned_cols=122  Identities=27%  Similarity=0.422  Sum_probs=104.7

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      .++.|++|+|+||||++.||+||+||++||  ++|| |+++.||||+|+|                              
T Consensus         2 v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f------------------------------   48 (164)
T 1lop_A            2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGF------------------------------   48 (164)
T ss_dssp             EEEEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEECCEEETTT------------------------------
T ss_pred             EEEEeCCCCEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCc------------------------------
Confidence            467899999999999999999999999999  8999 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      |||+||+....                                     
T Consensus        49 --------------------------------~iQgGd~~~~~-------------------------------------   59 (164)
T 1lop_A           49 --------------------------------MIQGGGFEPGM-------------------------------------   59 (164)
T ss_dssp             --------------------------------EEEESSEETTT-------------------------------------
T ss_pred             --------------------------------eEecCCcccCC-------------------------------------
Confidence                                            99999865310                                     


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhc-CCCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS-GPNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~-~p~s~~S  242 (287)
                                                                 +.++|+.+|++|.....++++|+|||||+ +|+|++|
T Consensus        60 -------------------------------------------g~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~s~gS   96 (164)
T 1lop_A           60 -------------------------------------------KQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATA   96 (164)
T ss_dssp             -------------------------------------------EECCCCCCBCCCCCSSCCCCTTEEEECCCSSTTCBCS
T ss_pred             -------------------------------------------CcCCCCCccccccccccccCccEEEEeecCCCCCccc
Confidence                                                       11234556777865434446999999985 6999999


Q ss_pred             eEEEEcCCCCCCCCC--------ccEEEEeeecccc
Q psy13279        243 QFFLCTTKQEICVKL--------LDLLASLDAGWET  270 (287)
Q Consensus       243 QFFIt~g~~~~LD~~--------ytVfG~VieG~dv  270 (287)
                      |||||++++||||++        |||||+|++||||
T Consensus        97 QFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dv  132 (164)
T 1lop_A           97 QFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDE  132 (164)
T ss_dssp             CEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHH
T ss_pred             eEEEEcCCccccCCccccccCCceEEEEEEecCHHH
Confidence            999999999999998        9999999999996

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=6e-35  Score=249.61  Aligned_cols=122  Identities=25%  Similarity=0.383  Sum_probs=103.6

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      .++.|++|+|+||||.+.||+||+||++||  +++| |+++.||||+|+|                              
T Consensus         6 v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f------------------------------   52 (167)
T 3s6m_A            6 VELHTNHGVIKLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGF------------------------------   52 (167)
T ss_dssp             EEEEETTEEEEEEECTTTCHHHHHHHHHHH--HHTT-TTTEECCEEETTT------------------------------
T ss_pred             EEEEeCCceEEEEEeCCCCcHHHHHHHHHh--hhcc-cCCCEeEEecCCc------------------------------
Confidence            466899999999999999999999999999  8899 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      |||+||+....+                                    
T Consensus        53 --------------------------------~iQgGd~~~~~~------------------------------------   64 (167)
T 3s6m_A           53 --------------------------------MIQGGGFEPGLK------------------------------------   64 (167)
T ss_dssp             --------------------------------EEEESSEETTTE------------------------------------
T ss_pred             --------------------------------EEEeccccCCCC------------------------------------
Confidence                                            999998653100                                    


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhh-cCCCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN-SGPNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~-~~p~s~~S  242 (287)
                                                                  .+.++.++.+|.....++++|+||||| .+|++++|
T Consensus        65 --------------------------------------------~~~~~~~~~~E~~~~l~~~~G~lsmA~~~~p~t~gS  100 (167)
T 3s6m_A           65 --------------------------------------------QKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATA  100 (167)
T ss_dssp             --------------------------------------------ECCCCCCBCCCGGGCCCCCTTEEEECCCSSTTCBCS
T ss_pred             --------------------------------------------CCCCCCccCCcccccccCCccEEEEecCCCCCCccc
Confidence                                                        011244466665444455899999999 56999999


Q ss_pred             eEEEEcCCCCCCCCC--------ccEEEEeeecccc
Q psy13279        243 QFFLCTTKQEICVKL--------LDLLASLDAGWET  270 (287)
Q Consensus       243 QFFIt~g~~~~LD~~--------ytVfG~VieG~dv  270 (287)
                      |||||+++++|||++        |||||+|++||||
T Consensus       101 QFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dv  136 (167)
T 3s6m_A          101 QFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDI  136 (167)
T ss_dssp             CEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHH
T ss_pred             eEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHH
Confidence            999999999999998        9999999999996

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=99.97  E-value=2.6e-32  Score=257.86  Aligned_cols=136  Identities=24%  Similarity=0.286  Sum_probs=109.5

Q ss_pred             EeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCCCCCC
Q psy13279          9 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIP   88 (287)
Q Consensus         9 ~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (287)
                      +.|+|+||||.+.||+||+||++||  ++|| |+|+.|||| ++|                                   
T Consensus       186 ~~G~I~IeL~~d~AP~Tv~NFl~L~--~~Gf-YdGt~FHRV-~gF-----------------------------------  226 (369)
T 3rfy_A          186 EDCVFRIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQRS-DGF-----------------------------------  226 (369)
T ss_dssp             SEEEEEEEEETTTCHHHHHHHHHHH--HTTT-TTTEECEEE-EEE-----------------------------------
T ss_pred             cceEEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCCeeeee-CCe-----------------------------------
Confidence            4999999999999999999999999  8999 999999999 999                                   


Q ss_pred             CCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCcccc---CcccccCcccccccCCCceeccccCCCCCCC
Q psy13279         89 LPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIY---GNKFEDENFVLKHTGPGVLSMANSGPNTNGS  165 (287)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~---~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~S  165 (287)
                                                 |||+||+.. +++|.....   +..++.|.                       
T Consensus       227 ---------------------------mIQgGDp~g-~G~G~~~~~~g~~~~iP~E~-----------------------  255 (369)
T 3rfy_A          227 ---------------------------VVQTGDPEG-PAEGFIDPSTEKTRTVPLEI-----------------------  255 (369)
T ss_dssp             ---------------------------EECCCCCCC-CCSCCCSCCCCCCCSSSSSS-----------------------
T ss_pred             ---------------------------eEecCCCCC-CCCCccCcccCcCcccCccc-----------------------
Confidence                                       999999875 555532100   01111111                       


Q ss_pred             ceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-----cccccCchhhhhhhhc--CCC
Q psy13279        166 QFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-----FILKHTGPGVLSMANS--GPN  238 (287)
Q Consensus       166 qFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-----~~~~h~~~G~lsMA~~--~p~  238 (287)
                                                 ..        .| .+.++|+..+.+|+     ..++|+++|+|||||+  +||
T Consensus       256 ---------------------------~~--------~G-~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPn  299 (369)
T 3rfy_A          256 ---------------------------MV--------TG-EKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFEND  299 (369)
T ss_dssp             ---------------------------CS--------SS-SCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCC
T ss_pred             ---------------------------cc--------cC-CCCCcCCCccccccccccccccccCCCceEEEeecCCCCC
Confidence                                       00        11 13467888888875     3789999999999998  799


Q ss_pred             CCCceEEEEc-------CCCCCCCCCccEEEEeeecccc
Q psy13279        239 TNGSQFFLCT-------TKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       239 s~~SQFFIt~-------g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      |++||||||+       ++.+|||++|||||+|++||||
T Consensus       300 SngSQFFItl~d~~L~~~~~~~LDgkytVFG~VveGmdV  338 (369)
T 3rfy_A          300 SGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDF  338 (369)
T ss_dssp             CSSCCCCCCCEEEEECSCCCSSSCSCEEEEEEEEESTTG
T ss_pred             CccceEEEEecccccCCCCCcccCCCeeEEEEEecCHHH
Confidence            9999999999       4789999999999999999997

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=99.60  E-value=3.6e-16  Score=133.95  Aligned_cols=69  Identities=58%  Similarity=0.867  Sum_probs=62.5

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      +.++|+.++++|++.++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.+.
T Consensus        82 g~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t  154 (173)
T 2igv_A           82 GESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS  154 (173)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC
T ss_pred             CCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCC
Confidence            456889999999999999999999999999999999999999987    899999999999999988876543

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=99.59  E-value=4e-16  Score=134.10  Aligned_cols=68  Identities=49%  Similarity=0.652  Sum_probs=62.1

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+..+++|+..++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.+
T Consensus        86 g~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~  157 (177)
T 1a58_A           86 GESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLK  157 (177)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCC
Confidence            456889999999999999999999999999999999999999987    89999999999999998777654

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=99.59  E-value=4.1e-16  Score=133.23  Aligned_cols=69  Identities=46%  Similarity=0.721  Sum_probs=62.8

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      +.++|+..+++|++.++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.+.
T Consensus        81 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t  153 (170)
T 1qng_A           81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA  153 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC
T ss_pred             CccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC
Confidence            457889999999999999999999999999999999999999987    899999999999999988877653

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=99.59  E-value=5.3e-16  Score=132.81  Aligned_cols=69  Identities=58%  Similarity=0.835  Sum_probs=62.5

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      +.++|+..+++|+..++|+++|+||||+.+|++++|||||++.+.    ++|++||+|.++++++++|.+.+.
T Consensus        82 g~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~  154 (172)
T 2cmt_A           82 GKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGS  154 (172)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCC
T ss_pred             CCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCC
Confidence            456889999999999999999999999999999999999999987    899999999999999988876543

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=99.59  E-value=4.7e-16  Score=132.29  Aligned_cols=68  Identities=54%  Similarity=0.854  Sum_probs=61.9

Q ss_pred             ccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        131 KSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       131 ~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      .++|+.++++|++.++|+++|+||||+.+|++++|||||++.+.    ++|++||+|.++++++++|.+.++
T Consensus        76 ~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~  147 (165)
T 2z6w_A           76 KSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS  147 (165)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC
T ss_pred             CcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC
Confidence            46788899999999999999999999999999999999999986    899999999999999988877653

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=99.59  E-value=5e-16  Score=133.05  Aligned_cols=68  Identities=60%  Similarity=0.892  Sum_probs=62.3

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+..+++|+..++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.+
T Consensus        83 g~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~  154 (173)
T 2r99_A           83 GKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQG  154 (173)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC
T ss_pred             CCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCC
Confidence            457889999999999999999999999999999999999999986    89999999999999998887654

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=99.59  E-value=4.9e-16  Score=133.55  Aligned_cols=68  Identities=43%  Similarity=0.614  Sum_probs=62.0

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+..+++|+..++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.+
T Consensus        87 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~  158 (177)
T 1mzw_A           87 VASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVP  158 (177)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCC
Confidence            356889999999999999999999999999999999999999987    89999999999999998777654

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=99.58  E-value=6.1e-16  Score=133.94  Aligned_cols=69  Identities=48%  Similarity=0.722  Sum_probs=61.8

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      +.++|+..+++|+..++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.+.
T Consensus        98 g~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t  170 (186)
T 2poy_A           98 GESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS  170 (186)
T ss_dssp             CCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC
T ss_pred             CCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCC
Confidence            456889999999999999999999999999999999999999987    899999999999999988877653

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=99.58  E-value=7.2e-16  Score=133.72  Aligned_cols=68  Identities=47%  Similarity=0.703  Sum_probs=62.4

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+..+++|+..++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.+
T Consensus        87 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~  158 (188)
T 3ich_A           87 GKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTK  158 (188)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCC
Confidence            457889999999999999999999999999999999999999987    89999999999999998777754

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=99.58  E-value=7.5e-16  Score=132.63  Aligned_cols=68  Identities=40%  Similarity=0.547  Sum_probs=61.9

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+..+++|++.++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+..
T Consensus        89 g~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~  160 (179)
T 2wfi_A           89 GESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQK  160 (179)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCC
T ss_pred             CCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCC
Confidence            457889999999999999999999999999999999999999987    89999999999999998776653

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=99.57  E-value=9.4e-16  Score=133.38  Aligned_cols=68  Identities=43%  Similarity=0.585  Sum_probs=62.1

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+..+++|++.++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.+
T Consensus        99 g~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~  170 (192)
T 2he9_A           99 GESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLK  170 (192)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCC
Confidence            457889999999999999999999999999999999999999987    89999999999999998777654

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=99.56  E-value=1.4e-15  Score=130.22  Aligned_cols=67  Identities=46%  Similarity=0.675  Sum_probs=61.1

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+.++++|+..++|. +|+||||+.+|++++|||||++.+.    ++|++||+|.++++++++|.+.+
T Consensus        83 g~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~  153 (172)
T 2haq_A           83 GKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTK  153 (172)
T ss_dssp             CCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCC
Confidence            4578899999999899999 9999999999999999999999987    89999999999999998777654

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=99.55  E-value=1.9e-15  Score=128.37  Aligned_cols=69  Identities=52%  Similarity=0.749  Sum_probs=62.8

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      +.++|+.++++|++.++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.+.
T Consensus        74 g~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~  146 (164)
T 3pmp_A           74 GKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGS  146 (164)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC
T ss_pred             CcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCC
Confidence            457889999999999999999999999999999999999999986    899999999999999988876543

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=99.55  E-value=2e-15  Score=130.61  Aligned_cols=68  Identities=47%  Similarity=0.702  Sum_probs=62.4

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+..+++|+..++|+++|+||||+.++++++|||||++.+.    ++|++||+|+++++++++|.+.+
T Consensus        84 g~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~  155 (185)
T 4fru_A           84 GKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTK  155 (185)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCC
Confidence            457889999999999999999999999999999999999999887    89999999999999998777654

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=99.54  E-value=3.5e-15  Score=129.00  Aligned_cols=69  Identities=59%  Similarity=0.927  Sum_probs=63.1

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      +.++|+..+++|++.++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.++
T Consensus        94 g~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~  166 (184)
T 3rdd_A           94 GKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS  166 (184)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC
T ss_pred             CcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCC
Confidence            457889999999999999999999999999999999999999987    899999999999999988877654

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=99.53  E-value=2e-15  Score=134.50  Aligned_cols=68  Identities=46%  Similarity=0.655  Sum_probs=62.3

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEE--EEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYY--IFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~--~g~~vi~~m~QgG  197 (287)
                      +.++|+..+++|++.++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+  .+++++++|.+.+
T Consensus       136 g~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~  209 (229)
T 1z81_A          136 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVS  209 (229)
T ss_dssp             CCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSC
T ss_pred             CCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCC
Confidence            457889999999999999999999999999999999999999987    8999999999  9999998777654

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=99.51  E-value=5.6e-15  Score=128.59  Aligned_cols=69  Identities=46%  Similarity=0.693  Sum_probs=62.8

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      +.++|+..+++|++.++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.+.
T Consensus        99 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t  171 (193)
T 3k2c_A           99 GRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGS  171 (193)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC
T ss_pred             CcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCC
Confidence            457889999999999999999999999999999999999999987    899999999999999988876554

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=99.51  E-value=7.6e-16  Score=131.81  Aligned_cols=69  Identities=48%  Similarity=0.706  Sum_probs=41.9

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEE--Eeeeeeeeeeccc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYI--FLTRFTQMCQGGD  198 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~--g~~vi~~m~QgGd  198 (287)
                      +.++|+.++++|+..++|+++|+||||+.+|++++|||||++.+.    ++|++||+|..  +++++++|.+.+.
T Consensus        79 g~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t  153 (172)
T 2c3b_A           79 GRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGS  153 (172)
T ss_dssp             --------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCC
T ss_pred             CcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCC
Confidence            356889999999999999999999999999999999999999987    89999999999  9999988876543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.48  E-value=1.4e-14  Score=136.43  Aligned_cols=68  Identities=47%  Similarity=0.642  Sum_probs=61.3

Q ss_pred             CccccCcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+..+++|++.++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+.++.++..+.+.+
T Consensus        95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~  166 (370)
T 1ihg_A           95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVE  166 (370)
T ss_dssp             CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCC
Confidence            457899999999999999999999999999999999999999987    89999999999998886665543

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=99.41  E-value=4.4e-14  Score=126.31  Aligned_cols=54  Identities=19%  Similarity=0.191  Sum_probs=49.4

Q ss_pred             cccccCCCceeccc----cCCCCCCCceeEEeee------c----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        144 VLKHTGPGVLSMAN----SGPNTNGSQFFLCTTS------I----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       144 ~~~h~~~G~l~ma~----~~~~s~~SqFfI~l~~------~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      .++|+++|+||||+    .+|++++|||||++.+      .    ++|++||+|+.+++++++|.+.+
T Consensus       120 ~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~~~  187 (234)
T 2ose_A          120 FYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMI  187 (234)
T ss_dssp             CCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHHHHHT
T ss_pred             CccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHHHHhCC
Confidence            68898999999999    8899999999999998      5    89999999999999998887754

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=99.30  E-value=7.1e-13  Score=112.06  Aligned_cols=67  Identities=43%  Similarity=0.556  Sum_probs=60.5

Q ss_pred             ccccCcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        131 KSIYGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       131 ~~~~~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      .++|+.++++|+. .++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.+
T Consensus        69 ~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~  140 (160)
T 2fu0_A           69 ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVR  140 (160)
T ss_dssp             CCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CcccCCCccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCC
Confidence            4678899999987 6899989999999999999999999999986    89999999999999998777654

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=99.30  E-value=7.2e-13  Score=112.67  Aligned_cols=68  Identities=43%  Similarity=0.608  Sum_probs=60.9

Q ss_pred             CccccCcccccCc-ccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDEN-FVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~-~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+..+++|+ ..++|+++|+||||+.+|++++|||||++.+.    ++|++||+|.++++++++|.+.+
T Consensus        74 g~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~  146 (166)
T 2x7k_A           74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVE  146 (166)
T ss_dssp             CCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSC
T ss_pred             CCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCC
Confidence            4568899999997 58899999999999999999999999999987    89999999999999998777654

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=99.29  E-value=7.3e-13  Score=112.39  Aligned_cols=64  Identities=14%  Similarity=0.113  Sum_probs=53.4

Q ss_pred             cCcccccCcccccccCCCceecccc-CCCCCCCceeEEeeec----cc--------eeeeEEEEEEeeeeeeeeecc
Q psy13279        134 YGNKFEDENFVLKHTGPGVLSMANS-GPNTNGSQFFLCTTSI----NK--------HYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       134 ~~~~~~~e~~~~~h~~~G~l~ma~~-~~~s~~SqFfI~l~~~----g~--------~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      |+.++++|+...+++++|+||||+. +|++++|||||++.+.    ++        |++||+|.++++++++|.+.+
T Consensus        64 ~g~~~~dE~~~~l~~~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~  140 (164)
T 1lop_A           64 TKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVA  140 (164)
T ss_dssp             CCCCBCCCCCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSC
T ss_pred             CCCccccccccccccCccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCC
Confidence            3667889986544456999999975 6999999999999986    55        999999999999998777654

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=99.29  E-value=9.2e-13  Score=111.45  Aligned_cols=68  Identities=44%  Similarity=0.544  Sum_probs=60.8

Q ss_pred             CccccCcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+..+++|+. .++|+++|+||||+.+|++++|||||++.+.    ++|++||+|.++++++++|.+..
T Consensus        63 g~si~g~~~~dE~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~  135 (161)
T 2ok3_A           63 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLP  135 (161)
T ss_dssp             CCCTTSSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCC
T ss_pred             CCcccCCccccccCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCC
Confidence            35688999999975 7889999999999999999999999999987    89999999999999998777654

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=99.28  E-value=1.1e-12  Score=112.45  Aligned_cols=68  Identities=41%  Similarity=0.589  Sum_probs=61.0

Q ss_pred             CccccCcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+..+++|+. .++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.+
T Consensus        84 g~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~  156 (176)
T 2a2n_A           84 GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVK  156 (176)
T ss_dssp             CCCTTSSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CCcccCCccccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCC
Confidence            34688999999987 6899999999999999999999999999986    89999999999999998777654

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=99.27  E-value=1.1e-12  Score=113.46  Aligned_cols=68  Identities=38%  Similarity=0.528  Sum_probs=61.4

Q ss_pred             CccccCcccccCc-ccccccCCCceeccccC----CCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDEN-FVLKHTGPGVLSMANSG----PNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~-~~~~h~~~G~l~ma~~~----~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+.++++|+ ..++|+++|+||||+.+    |++++|||||++.+.    ++|++||+|.++++++++|.+.+
T Consensus        79 g~si~g~~~~dE~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~  155 (185)
T 2poe_A           79 GESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCP  155 (185)
T ss_dssp             CCBTTBSCBCCCCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSC
T ss_pred             CCccCCCcccccccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCC
Confidence            3468899999997 78899999999999998    999999999999987    89999999999999998887754

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=99.26  E-value=1.5e-12  Score=113.55  Aligned_cols=68  Identities=47%  Similarity=0.689  Sum_probs=60.8

Q ss_pred             CccccCcccccCc-ccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDEN-FVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e~-~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+.++++|. ..++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+.+++++++|.+.+
T Consensus       101 g~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~  173 (196)
T 2b71_A          101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQ  173 (196)
T ss_dssp             CCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CCccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCC
Confidence            4568899999994 67899899999999999999999999999987    89999999999999998777654

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=99.25  E-value=1.9e-12  Score=112.93  Aligned_cols=68  Identities=44%  Similarity=0.575  Sum_probs=61.1

Q ss_pred             CccccCcccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        130 GKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       130 ~~~~~~~~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++|+.++++| +..++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+.+++++++|.+.+
T Consensus        82 g~si~g~~f~dE~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~  154 (197)
T 1zkc_A           82 GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVE  154 (197)
T ss_dssp             CCBTTBSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSC
T ss_pred             CCccCCCccccccCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCC
Confidence            456889999999 478899999999999999999999999999986    89999999999999998777654

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=99.22  E-value=2.6e-12  Score=112.36  Aligned_cols=63  Identities=41%  Similarity=0.451  Sum_probs=56.3

Q ss_pred             CcccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        135 GNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       135 ~~~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +..+++| +..++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+.+++++++|.+.+
T Consensus        86 g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~  153 (201)
T 3bo7_A           86 GAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLE  153 (201)
T ss_dssp             CCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCC
T ss_pred             CCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCC
Confidence            5678889 468889899999999999999999999999986    89999999999999997777654

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=99.18  E-value=3.6e-12  Score=111.56  Aligned_cols=67  Identities=43%  Similarity=0.621  Sum_probs=59.6

Q ss_pred             CccccCcccccCc-ccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeec
Q psy13279        130 GKSIYGNKFEDEN-FVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQG  196 (287)
Q Consensus       130 ~~~~~~~~~~~e~-~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~Qg  196 (287)
                      +.++|+..+++|+ ..++|+++|+|+||+.+|++++|||||++.+.    ++|++||+|+++++++++|.+.
T Consensus        74 g~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~  145 (203)
T 2k7n_A           74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMV  145 (203)
T ss_dssp             CCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSC
T ss_pred             CCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcC
Confidence            3467889999997 58899999999999999999999999999986    8999999999999988766654

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=99.12  E-value=9.8e-12  Score=107.89  Aligned_cols=61  Identities=33%  Similarity=0.457  Sum_probs=54.6

Q ss_pred             ccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEE--Eeeeeeeeeecc
Q psy13279        137 KFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYI--FLTRFTQMCQGG  197 (287)
Q Consensus       137 ~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~--g~~vi~~m~QgG  197 (287)
                      .+++| ++.++|+++|+||||+.+|++++|||||++.+.    ++|++||+|+.  +++++++|.+.+
T Consensus       105 ~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~  172 (191)
T 1w74_A          105 KFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTA  172 (191)
T ss_dssp             CBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSC
T ss_pred             ccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCC
Confidence            36788 468899999999999999999999999999987    89999999999  999998777654

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=99.09  E-value=6e-11  Score=112.09  Aligned_cols=67  Identities=18%  Similarity=0.272  Sum_probs=58.0

Q ss_pred             ccccCcccccCcc-----cccccCCCceecccc--CCCCCCCceeEEeee-------c----cceeeeEEEEEEeeeeee
Q psy13279        131 KSIYGNKFEDENF-----VLKHTGPGVLSMANS--GPNTNGSQFFLCTTS-------I----NKHYYYYYYYIFLTRFTQ  192 (287)
Q Consensus       131 ~~~~~~~~~~e~~-----~~~h~~~G~l~ma~~--~~~s~~SqFfI~l~~-------~----g~~~vfG~v~~g~~vi~~  192 (287)
                      .++|+..+++|++     .++|+++|+||||+.  +||+++|||||++.+       .    ++|++||+|+.+++++++
T Consensus       262 ~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgkytVFG~VveGmdVVdk  341 (369)
T 3rfy_A          262 TPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLAD  341 (369)
T ss_dssp             CSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCEEEEEEEEESTTGGGG
T ss_pred             CCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCeeEEEEEecCHHHHHH
Confidence            4578888888853     788999999999998  799999999999953       1    899999999999999988


Q ss_pred             eeecc
Q psy13279        193 MCQGG  197 (287)
Q Consensus       193 m~QgG  197 (287)
                      |.++.
T Consensus       342 I~~GD  346 (369)
T 3rfy_A          342 LKVGD  346 (369)
T ss_dssp             CCTTC
T ss_pred             HhCCC
Confidence            87753

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=99.04  E-value=1.3e-10  Score=100.28  Aligned_cols=59  Identities=41%  Similarity=0.567  Sum_probs=51.9

Q ss_pred             CccccCcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeee
Q psy13279        130 GKSIYGNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTR  189 (287)
Q Consensus       130 ~~~~~~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~v  189 (287)
                      +.++|+.++++|+. .++|+++|+||||+.++++++|||||++.+.    ++|++||+|. ++.+
T Consensus        87 g~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v  150 (185)
T 2hq6_A           87 GESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTV  150 (185)
T ss_dssp             CCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGH
T ss_pred             CCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCee
Confidence            34678999999975 6889999999999999999999999999986    8999999998 6544

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=99.02  E-value=7.1e-11  Score=100.28  Aligned_cols=61  Identities=15%  Similarity=0.092  Sum_probs=52.4

Q ss_pred             ccccCcccccccCCCceecccc-CCCCCCCceeEEeeec----cc-----eeeeEEEEEEeeeeeeeeecc
Q psy13279        137 KFEDENFVLKHTGPGVLSMANS-GPNTNGSQFFLCTTSI----NK-----HYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       137 ~~~~e~~~~~h~~~G~l~ma~~-~~~s~~SqFfI~l~~~----g~-----~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      ++++|+...+|+++|+||||+. +|++++|||||++.+.    ++     |++||+|+++++++++|.+.+
T Consensus        72 ~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~  142 (166)
T 1v9t_A           72 PIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP  142 (166)
T ss_dssp             CBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSC
T ss_pred             cccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCC
Confidence            4778876666777999999997 5999999999999987    55     999999999999998777654

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=98.98  E-value=1.4e-10  Score=98.55  Aligned_cols=62  Identities=11%  Similarity=0.036  Sum_probs=51.4

Q ss_pred             cccccCcccccccCCCceeccc-cCCCCCCCceeEEeeec----cc--------eeeeEEEEEEeeeeeeeeecc
Q psy13279        136 NKFEDENFVLKHTGPGVLSMAN-SGPNTNGSQFFLCTTSI----NK--------HYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       136 ~~~~~e~~~~~h~~~G~l~ma~-~~~~s~~SqFfI~l~~~----g~--------~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      .++++|....+++++|+||||+ .+|++++|||||++.+.    ++        |++||+|.++++++++|.+.+
T Consensus        70 ~~~~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~  144 (167)
T 3s6m_A           70 APIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVK  144 (167)
T ss_dssp             CCBCCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSC
T ss_pred             CccCCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCC
Confidence            3567776555555799999999 56999999999999886    55        999999999999998777754

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=98.87  E-value=1.2e-09  Score=97.48  Aligned_cols=42  Identities=29%  Similarity=0.294  Sum_probs=35.4

Q ss_pred             ccCCCceeccccCC--------------CCCCCceeEEeeec----cceeeeEEEEEEeee
Q psy13279        147 HTGPGVLSMANSGP--------------NTNGSQFFLCTTSI----NKHYYYYYYYIFLTR  189 (287)
Q Consensus       147 h~~~G~l~ma~~~~--------------~s~~SqFfI~l~~~----g~~~vfG~v~~g~~v  189 (287)
                      |+.+|+||||+.++              ++++|||||++.+.    ++|++||+|. ++.+
T Consensus       104 h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v  163 (232)
T 3bkp_A          104 FRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTL  163 (232)
T ss_dssp             CCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGH
T ss_pred             cCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCch
Confidence            66799999999986              69999999999986    8999999998 5543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	287
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	1e-17
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	1e-16
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	3e-12
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	3e-16
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	3e-15
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	8e-16
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	1e-15
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	1e-15
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	1e-13
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	3e-08
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	2e-15
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	7e-15
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	9e-05
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	9e-15
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	4e-13
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	2e-07
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-14
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-07
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	5e-14
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	2e-13
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	2e-12
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	7e-14
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	3e-13
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	1e-10
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	7e-14
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	3e-10
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	6e-13
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	2e-11
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	2e-11
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	6e-13
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	8e-12
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	1e-11
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	1e-12
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	2e-12
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	8e-12
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	4e-11
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	4e-10
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	1e-11
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	3e-10
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	4e-08
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	1e-11
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	1e-10
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	3e-11
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	2e-10
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	1e-07
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	1e-07
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	4e-07
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	8e-07
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	2e-04
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	4e-06
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	1e-05
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	3e-05
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	8e-06
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-05
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	8e-05
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-04

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score = 75.9 bits (186), Expect = 1e-17
 Identities = 47/87 (54%), Positives = 53/87 (60%)

Query: 168 FLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGP 227
           F    +  K + Y   +        M QGGDFT  NGTGGKSIYG KF DENF LKH  P
Sbjct: 34  FRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKP 93

Query: 228 GVLSMANSGPNTNGSQFFLCTTKQEIC 254
           G+LSMAN+GPNTNGSQFF+ T      
Sbjct: 94  GLLSMANAGPNTNGSQFFITTVVTSWL 120

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score = 73.6 bits (180), Expect = 1e-16
 Identities = 47/85 (55%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 100 CGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSG 159
            G  G+   H    + M QGGDFT  NGTGGKSIYG KF DENF LKH  PG+LSMAN+G
Sbjct: 44  FGYAGS-HFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAG 102

Query: 160 PNTNGSQFFLCTTSINKHYYYYYYY 184
           PNTNGSQFF+ T   +     +  +
Sbjct: 103 PNTNGSQFFITTVVTSWLDGKHVVF 127

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score = 61.3 bits (148), Expect = 3e-12
 Identities = 31/53 (58%), Positives = 36/53 (67%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           DI      +G I  +L  D+VP+TA NFR LCT EKGFGY GS FHR+IPDF
Sbjct: 6  FDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDF 58

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score = 72.6 bits (177), Expect = 3e-16
 Identities = 41/75 (54%), Positives = 49/75 (65%)

Query: 176 KHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS 235
           K+ +Y            MCQGGD TN NG+GG+SIYG  F DENF +KH  PG+LSMAN+
Sbjct: 50  KNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANA 109

Query: 236 GPNTNGSQFFLCTTK 250
           GPNTN SQFF+    
Sbjct: 110 GPNTNSSQFFITLVP 124

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score = 69.9 bits (170), Expect = 3e-15
 Identities = 44/92 (47%), Positives = 52/92 (56%)

Query: 80  RTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFE 139
           RT  +F      + I              H      MCQGGD TN NG+GG+SIYG  F 
Sbjct: 31  RTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFT 90

Query: 140 DENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
           DENF +KH  PG+LSMAN+GPNTN SQFF+  
Sbjct: 91  DENFNMKHDQPGLLSMANAGPNTNSSQFFITL 122

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score = 71.4 bits (174), Expect = 8e-16
 Identities = 50/80 (62%), Positives = 54/80 (67%)

Query: 175 NKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 234
            K  ++            M QGGDFT  NGTGG+SIYG KF DENF  KHTGPGVLSMAN
Sbjct: 50  GKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMAN 109

Query: 235 SGPNTNGSQFFLCTTKQEIC 254
           +GPNTNGSQFFLCT K E  
Sbjct: 110 AGPNTNGSQFFLCTVKTEWL 129

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score = 71.4 bits (174), Expect = 1e-15
 Identities = 63/171 (36%), Positives = 75/171 (43%), Gaps = 55/171 (32%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
            DI IG +  GRI ++L  D+VP+T                                   
Sbjct: 8   FDITIGGKASGRIVMELYDDVVPKT----------------------------AGNFRAL 39

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
            + ++   K        G++     P                           N M QGG
Sbjct: 40  CTGENGIGKSGKPLHFKGSKFHRIIP---------------------------NFMIQGG 72

Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
           DFT  NGTGG+SIYG KF DENF  KHTGPGVLSMAN+GPNTNGSQFFLCT
Sbjct: 73  DFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCT 123

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 1e-15
 Identities = 45/114 (39%), Positives = 59/114 (51%), Gaps = 10/114 (8%)

Query: 143 FVLKHTGPGVLSM---ANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDF 199
           +V  HT  G L++    +  P T  +   LC     K +YY       +    + QGGD 
Sbjct: 2   YVRLHTNKGDLNLELHCDLTPKTCENFIRLC-----KKHYYDGTIFHRSIRNFVIQGGDP 56

Query: 200 TNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQE 252
           T   GTGG+S +G  F+DE    L HTG G+LSMANSGPN+N SQFF+      
Sbjct: 57  T-GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCA 109

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (159), Expect = 1e-13
 Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI 174
           + QGGD T   GTGG+S +G  F+DE    L HTG G+LSMANSGPN+N SQFF+   S 
Sbjct: 50  VIQGGDPT-GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSC 108

Query: 175 NKHYYYYYYY 184
                 +  +
Sbjct: 109 AYLDKKHTIF 118

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 3e-08
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G + ++L  DL P+T ENF  LC   K   Y G+ FHR I +FV
Sbjct: 10 GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFV 50

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 2e-15
 Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 100 CGSKGTFQSHSSRINK--MCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMA 156
                   +   RI K  M QGGD T   G GG SIYG +FEDE +  LK TG G+L+MA
Sbjct: 43  ARRGYYNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMA 101

Query: 157 NSGPNTNGSQFFLCTTSINKHYYYYYYY 184
           N+GP+TNGSQFF+           +  +
Sbjct: 102 NAGPDTNGSQFFVTLAPTQWLDGKHTIF 129

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 7e-15
 Identities = 38/93 (40%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 179 YYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGP 237
           YY            M QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP
Sbjct: 47  YYNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGP 105

Query: 238 NTNGSQFFLCTTKQEICVKLLDLLASLDAGWET 270
           +TNGSQFF+     +       +   +  G   
Sbjct: 106 DTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGM 138

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 9e-05
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G I ++L +   P+T +NF  L       G +   FHRII DF+
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELARRGYYNGTK---FHRIIKDFM 61

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score = 68.3 bits (166), Expect = 9e-15
 Identities = 43/84 (51%), Positives = 48/84 (57%)

Query: 168 FLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGP 227
           F           Y            M QGGDFT  NGTGG+SIYG+KF DENF  KH   
Sbjct: 39  FRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKK 98

Query: 228 GVLSMANSGPNTNGSQFFLCTTKQ 251
           G+LSMAN+GPNTNGSQFF+ T   
Sbjct: 99  GILSMANAGPNTNGSQFFITTAVT 122

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score = 64.1 bits (155), Expect = 4e-13
 Identities = 40/55 (72%), Positives = 45/55 (81%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLC 170
           M QGGDFT  NGTGG+SIYG+KF DENF  KH   G+LSMAN+GPNTNGSQFF+ 
Sbjct: 64  MIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFIT 118

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 25/52 (48%), Positives = 33/52 (63%)

Query: 2  DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           +   + +VGRI   L    VP+TA+NFR LC    G GY+ S+FHRIIP+F
Sbjct: 12 PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNF 63

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 68.3 bits (166), Expect = 1e-14
 Identities = 39/174 (22%), Positives = 53/174 (30%), Gaps = 53/174 (30%)

Query: 11  GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKF 70
           G I I L  +  P+T  NF  L    K +  Q +S                         
Sbjct: 13  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGG----------------------- 49

Query: 71  RFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGG 130
                            P    Y          G    H      M QGGD     GTG 
Sbjct: 50  -----------------PSGPFY---------DGAVF-HRVIQGFMIQGGDP---TGTGR 79

Query: 131 KSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYY 184
                   ++ +  L+   P +L+MAN+GP TNGSQFF+           +  +
Sbjct: 80  GGPGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIF 133

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 171 TTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVL 230
            +      +Y            M QGGD     GTG         ++ +  L+   P +L
Sbjct: 46  ASGGPSGPFYDGAVFHRVIQGFMIQGGDP---TGTGRGGPGYKFADEFHPELQFDKPYLL 102

Query: 231 SMANSGPNTNGSQFFLCTTKQEIC 254
           +MAN+GP TNGSQFF+   K    
Sbjct: 103 AMANAGPGTNGSQFFITVGKTPHL 126

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score = 66.4 bits (161), Expect = 5e-14
 Identities = 48/117 (41%), Positives = 61/117 (52%), Gaps = 6/117 (5%)

Query: 160 PNTNGSQFFLCTTSIN------KHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGN 213
           P T  +   LCT          K  +Y            M QGGDFT  +GTGG+SIYG 
Sbjct: 30  PRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGG 89

Query: 214 KFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET 270
            F+DE F++KH  P V+SMAN GPNTNGSQFF+ TT       +  +   + +G E 
Sbjct: 90  MFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEV 146

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score = 65.2 bits (158), Expect = 2e-13
 Identities = 42/74 (56%), Positives = 49/74 (66%)

Query: 108 SHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQF 167
            H    N M QGGDFT  +GTGG+SIYG  F+DE FV+KH  P V+SMAN GPNTNGSQF
Sbjct: 61  FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 120

Query: 168 FLCTTSINKHYYYY 181
           F+ TT        +
Sbjct: 121 FITTTPAPHLNNIH 134

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score = 62.1 bits (150), Expect = 2e-12
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 8/62 (12%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
          +D+ I     GRI ++L  D+ PRT  NF  LCT   G G        Y+GS+FHR+I +
Sbjct: 8  LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKN 67

Query: 53 FV 54
          F+
Sbjct: 68 FM 69

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score = 66.4 bits (161), Expect = 7e-14
 Identities = 43/87 (49%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 170 CTTSINKHYYYYYYYIFLTRFT--QMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGP 227
                     Y Y      R     M QGGDFT  +GTGG SIYG  F DENF LKH G 
Sbjct: 40  FVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGI 99

Query: 228 GVLSMANSGPNTNGSQFFLCTTKQEIC 254
           G +SMAN+GP+TNGSQFF+  TK    
Sbjct: 100 GWVSMANAGPDTNGSQFFITLTKPTWL 126

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 39/71 (54%), Positives = 47/71 (66%)

Query: 114 NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTS 173
           + M QGGDFT  +GTGG SIYG  F DENF LKH G G +SMAN+GP+TNGSQFF+  T 
Sbjct: 63  DFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTK 122

Query: 174 INKHYYYYYYY 184
                  +  +
Sbjct: 123 PTWLDGKHVVF 133

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           D++IG ++VGRI I L  ++VP+T ENF  L T EKG+GY+GS FHR+I DF
Sbjct: 12 FDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDF 64

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.8 bits (162), Expect = 7e-14
 Identities = 61/171 (35%), Positives = 76/171 (44%), Gaps = 54/171 (31%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
            D+ IG + VGRI ++L  D+VP+TAEN                        F +  T  
Sbjct: 19  FDVDIGGERVGRIVLELFADIVPKTAEN------------------------FRALCTGE 54

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
           + +     K         +R    F                              M QGG
Sbjct: 55  KGIGPTTGKPLHFKGCPFHRIIKKF------------------------------MIQGG 84

Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
           DF+N NGTGG+SIYG KFEDENF  KH   G+LSMAN+G NTNGSQFF+ T
Sbjct: 85  DFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 135

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.4 bits (135), Expect = 3e-10
 Identities = 42/78 (53%), Positives = 49/78 (62%)

Query: 175 NKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 234
            K  ++            M QGGDF+N NGTGG+SIYG KFEDENF  KH   G+LSMAN
Sbjct: 62  GKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMAN 121

Query: 235 SGPNTNGSQFFLCTTKQE 252
           +G NTNGSQFF+ T    
Sbjct: 122 AGSNTNGSQFFITTVPTP 139

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 6e-13
 Identities = 56/95 (58%), Positives = 64/95 (67%), Gaps = 2/95 (2%)

Query: 160 PNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN 219
           P T  +   LCT    K + Y          + MCQ GDFTNHNGTGGKSIYG++F DEN
Sbjct: 29  PKTAENFRALCTG--EKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDEN 86

Query: 220 FILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEIC 254
           F LKH GPGVLSMAN+GPNTNGSQFF+CT K +  
Sbjct: 87  FTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 121

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 30/54 (55%), Positives = 44/54 (81%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          +D+    + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F+
Sbjct: 7  LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 60

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 2e-11
 Identities = 49/76 (64%), Positives = 57/76 (75%)

Query: 109 HSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFF 168
           H    + MCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF
Sbjct: 53  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 112

Query: 169 LCTTSINKHYYYYYYY 184
           +CT   +     +  +
Sbjct: 113 ICTIKTDWLDGKHVVF 128

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score = 63.7 bits (154), Expect = 6e-13
 Identities = 46/91 (50%), Positives = 56/91 (61%), Gaps = 2/91 (2%)

Query: 160 PNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN 219
           P T  +   L      + Y    ++  +  F  M QGGDFT  +GTGG+SIYG KF DEN
Sbjct: 33  PKTATNFIELAKKPKGEGYPGSKFHRVIADF--MIQGGDFTRGDGTGGRSIYGEKFADEN 90

Query: 220 FILKHTGPGVLSMANSGPNTNGSQFFLCTTK 250
           F LKH G G LSMAN+G +TNGSQFF+ T K
Sbjct: 91  FKLKHYGAGWLSMANAGADTNGSQFFITTVK 121

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score = 60.6 bits (146), Expect = 8e-12
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 97  CLDCGSKGTFQSHSSRI--NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLS 154
                 +G   S   R+  + M QGGDFT  +GTGG+SIYG KF DENF LKH G G LS
Sbjct: 43  AKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLS 102

Query: 155 MANSGPNTNGSQFFLCTTSINKHYYYYYYY 184
           MAN+G +TNGSQFF+ T         +  +
Sbjct: 103 MANAGADTNGSQFFITTVKTPWLDGRHVVF 132

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 27/53 (50%), Positives = 33/53 (62%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           D++IG + +GRI I L    VP+TA NF  L    KG GY GS FHR+I DF
Sbjct: 11 FDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 63

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 1e-12
 Identities = 38/77 (49%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 176 KHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMAN 234
              YY            M Q GD     G GG SI+G KFEDE +  LKH   GV+SMAN
Sbjct: 33  ASNYYNGCIFHRNIKGFMVQTGDP-TGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMAN 91

Query: 235 SGPNTNGSQFFLCTTKQ 251
           +GPNTNGSQFF+   KQ
Sbjct: 92  NGPNTNGSQFFITYGKQ 108

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 2e-12
 Identities = 36/80 (45%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 106 FQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANSGPNTNG 164
              H +    M Q GD     G GG SI+G KFEDE +  LKH   GV+SMAN+GPNTNG
Sbjct: 40  CIFHRNIKGFMVQTGDP-TGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNG 98

Query: 165 SQFFLCTTSINKHYYYYYYY 184
           SQFF+           Y  +
Sbjct: 99  SQFFITYGKQPHLDMKYTVF 118

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 60.2 bits (145), Expect = 8e-12
 Identities = 43/92 (46%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 160 PNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN 219
           P T   + F    S    + Y            M QGGDFTN +GTGGKSIYG +F+DEN
Sbjct: 32  PKT--VENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDEN 89

Query: 220 FILKHTGPGVLSMANSGPNTNGSQFFLCTTKQ 251
             +KH   G +SMAN+GPN+NGSQFF+ T   
Sbjct: 90  LKIKHF-VGAVSMANAGPNSNGSQFFVTTAPT 120

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 57.9 bits (139), Expect = 4e-11
 Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 114 NKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTS 173
           N M QGGDFTN +GTGGKSIYG +F+DEN  +KH   G +SMAN+GPN+NGSQFF+ T  
Sbjct: 61  NFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAP 119

Query: 174 INKHYYYYYYY 184
                  +  +
Sbjct: 120 TPWLDGRHVVF 130

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 55.2 bits (132), Expect = 4e-10
 Identities = 28/53 (52%), Positives = 37/53 (69%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           DI IG + VGR+ I L  + VP+T ENF+ L + E GFGY+GS FHR+I +F
Sbjct: 10 FDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNF 62

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
           MDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F+      
Sbjct: 6   MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDF 65

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
            +      K  +         +        +K+  P L   +     ++ S+    C   
Sbjct: 66  TNHNGTGGKSIYG--------KKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKT 117

Query: 121 DFTNHNGT 128
           D+ +    
Sbjct: 118 DWLDGKHV 125

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 3e-10
 Identities = 57/95 (60%), Positives = 65/95 (68%), Gaps = 2/95 (2%)

Query: 160 PNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN 219
           P T  ++ F C  +  K + +            MCQGGDFTNHNGTGGKSIYG KF+DEN
Sbjct: 28  PMT--AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN 85

Query: 220 FILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEIC 254
           FILKHTGPG+LSMANSGPNTNGSQFFL   K +  
Sbjct: 86  FILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 120

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 4e-08
 Identities = 50/55 (90%), Positives = 53/55 (96%)

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLC 170
           MCQGGDFTNHNGTGGKSIYG KF+DENF+LKHTGPG+LSMANSGPNTNGSQFFL 
Sbjct: 59  MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 113

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 43/135 (31%), Positives = 57/135 (42%), Gaps = 10/135 (7%)

Query: 140 DENFVLKHTGPGVLSM---ANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQG 196
           +  ++  +T  G   +       P T  + + LC         +Y   IF          
Sbjct: 15  ERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLC------EMGFYDNTIFHRVIPNFVIQ 68

Query: 197 GDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKQEICV 255
           G      G GGKSIYG  FEDE N  LKHTG G+LSM+N+GPNTN SQFF+         
Sbjct: 69  GGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLD 128

Query: 256 KLLDLLASLDAGWET 270
               + A +      
Sbjct: 129 GKHTIFARVSKNMTC 143

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 34/86 (39%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 100 CGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDE-NFVLKHTGPGVLSMANS 158
                        I      G      G GGKSIYG  FEDE N  LKHTG G+LSM+N+
Sbjct: 49  EMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNN 108

Query: 159 GPNTNGSQFFLCTTSINKHYYYYYYY 184
           GPNTN SQFF+    +      +  +
Sbjct: 109 GPNTNSSQFFITLAPLPHLDGKHTIF 134

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 3e-11
 Identities = 38/80 (47%), Positives = 46/80 (57%)

Query: 175 NKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 234
                Y            M QGGDF N +GTG  SIY   F DENF L+H+ PG+LSMAN
Sbjct: 51  GVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMAN 110

Query: 235 SGPNTNGSQFFLCTTKQEIC 254
           SGP+TNG QFF+  +K +  
Sbjct: 111 SGPSTNGCQFFITCSKCDWL 130

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 56/176 (31%), Positives = 71/176 (40%), Gaps = 67/176 (38%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFHRIIPDFVS 55
            D+ IG QEVGR+ I+L  D+VP+TAENFR  CT E        GY+GS+FHR+I DF  
Sbjct: 11  FDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF-- 68

Query: 56  FMTKRQSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINK 115
                                                           G F +       
Sbjct: 69  --------------------------------------------MIQGGDFVNGDGTGVA 84

Query: 116 MCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCT 171
               G F +                 NF L+H+ PG+LSMANSGP+TNG QFF+  
Sbjct: 85  SIYRGPFADE----------------NFKLRHSAPGLLSMANSGPSTNGCQFFITC 124

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 48/186 (25%), Positives = 69/186 (37%), Gaps = 59/186 (31%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKR 60
           MDI +G   +G+   +L  ++VP+T+ENFR  CT E         +   I          
Sbjct: 21  MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTI---------- 70

Query: 61  QSLKSRFSKFRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGG 120
                                          + I+  +  G  G F +H+   +    G 
Sbjct: 71  -----------------------------FHRVIKEFMIQG--GDFINHNGSGSLSIYGE 99

Query: 121 DFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYY 180
            F                +DENF +KH   G+LSMANSGPNTNG QFF+ T      +  
Sbjct: 100 KF----------------DDENFDIKHDKEGLLSMANSGPNTNGCQFFITTK--KCEWLD 141

Query: 181 YYYYIF 186
               +F
Sbjct: 142 GKNVVF 147

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 42/74 (56%), Positives = 47/74 (63%)

Query: 175 NKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 234
           N    Y            M QGGDF NHNG+G  SIYG KF+DENF +KH   G+LSMAN
Sbjct: 61  NLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMAN 120

Query: 235 SGPNTNGSQFFLCT 248
           SGPNTNG QFF+ T
Sbjct: 121 SGPNTNGCQFFITT 134

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 177 HYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANS 235
              YY   IF              + +GTGG+SI+GN+FEDE F  L H+ P ++SMAN 
Sbjct: 34  INGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANC 93

Query: 236 GPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET 270
           GPNTNGSQFF+ T           +   +  G + 
Sbjct: 94  GPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKI 128

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 45.7 bits (107), Expect = 8e-07
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 88  PLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENF-VLK 146
              ++        G       H    + M Q GD +   GTGG+SI+GN+FEDE F  L 
Sbjct: 23  KKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGD-GTGGESIWGNEFEDEFFDHLN 81

Query: 147 HTGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYY 184
           H+ P ++SMAN GPNTNGSQFF+ T       + +  +
Sbjct: 82  HSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVF 119

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 1/109 (0%)

Query: 10  VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSK 69
           +G I I L Y    +T +NF     +            +         +   +       
Sbjct: 10  MGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWG 69

Query: 70  FRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQ 118
             F+     +   HS P  + M    P  +             ++    
Sbjct: 70  NEFEDEF-FDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHT 117

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 28/96 (29%), Positives = 40/96 (41%)

Query: 175 NKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 234
           +++ YY  +         M Q GD T     G     G   ++ +  L+H  P  LSMAN
Sbjct: 41  SRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMAN 100

Query: 235 SGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET 270
           +G NTNGSQFF+             +   +  G E 
Sbjct: 101 AGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEV 136

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 27/97 (27%), Positives = 37/97 (38%)

Query: 88  PLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKH 147
           P  ++        G       H      M Q GD T     G     G   ++ +  L+H
Sbjct: 31  PKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRH 90

Query: 148 TGPGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYY 184
             P  LSMAN+G NTNGSQFF+           +  +
Sbjct: 91  DRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVF 127

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMT 58
           D  I    +G I  +L     P+T ENF   C H +   Y G +FHRII  F+    
Sbjct: 9  SDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTG 63

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 8e-06
 Identities = 12/81 (14%), Positives = 24/81 (29%)

Query: 100 CGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSG 159
           C       +   R+             G   K+       + N  LK+T   +       
Sbjct: 31  CREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQA 90

Query: 160 PNTNGSQFFLCTTSINKHYYY 180
           P++  +QFF+     +   + 
Sbjct: 91  PHSATAQFFINVVDNDFLNFS 111

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMT 58
          G I I+   D  P T +NF   C   +   Y  + FHR+I  F+    
Sbjct: 9  GDIVIKTFDDKAPETVKNFLDYC---REGFYNNTIFHRVINGFMIQGG 53

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 12/74 (16%), Positives = 22/74 (29%)

Query: 181 YYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN 240
           +Y      R              G   K+       + N  LK+T   +       P++ 
Sbjct: 35  FYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSA 94

Query: 241 GSQFFLCTTKQEIC 254
            +QFF+     +  
Sbjct: 95  TAQFFINVVDNDFL 108

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 11/73 (15%), Positives = 19/73 (26%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSK 69
           G I ++L     P + +NF                            T++   K     
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPP 72

Query: 70 FRFDFAAGGNRTR 82
           + +   G   TR
Sbjct: 73 IKNEADNGLRNTR 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	99.98
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	99.98
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	99.98
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	99.97
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	99.97
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	99.97
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	99.97
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.97
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.96
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	99.96
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	99.23
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	99.23
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	99.21
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	99.18
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	99.16
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	99.16
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	99.12
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	99.11
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	99.1
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	99.09
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	99.04
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	99.03
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	98.98
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	98.98
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	98.87
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	98.83
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	98.81
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	98.8
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	98.71
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	98.7
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	98.68
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	98.47

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=254.87  Aligned_cols=143  Identities=66%  Similarity=1.069  Sum_probs=123.6

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCC-CceecCceeEEeccCccccccccccccccccccccccccCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK-GFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGN   79 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~-g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   79 (287)
                      |||+|+++++|+|+||||.+.||+||+||++||++++ ++ |+++.||||+|+|                          
T Consensus         6 ~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~-Y~g~~f~Rv~~~~--------------------------   58 (161)
T d2r99a1           6 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-FKGSSFHRIIPQF--------------------------   58 (161)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-STTCBEEEEETTT--------------------------
T ss_pred             EEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccc-cCCcEEEEEEEee--------------------------
Confidence            7999999999999999999999999999999998755 56 9999999999999                          


Q ss_pred             CccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccC
Q psy13279         80 RTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSG  159 (287)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~  159 (287)
                                                          ++|+|++...++.+.                             
T Consensus        59 ------------------------------------~iq~G~~~~~~~~~~-----------------------------   73 (161)
T d2r99a1          59 ------------------------------------MCQGGDFTNHNGTGG-----------------------------   73 (161)
T ss_dssp             ------------------------------------EEEECCTTTSSSSCC-----------------------------
T ss_pred             ------------------------------------eEEeeeccCCCCCCC-----------------------------
Confidence                                                999998765332221                             


Q ss_pred             CCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCC
Q psy13279        160 PNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNT  239 (287)
Q Consensus       160 ~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s  239 (287)
                                                                      .+.++..+.++....+|+.+|+||||+.+|++
T Consensus        74 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~G~ls~~~~~~~s  105 (161)
T d2r99a1          74 ------------------------------------------------KSIYGKKFDDENFILKHTGPGLLSMANSGPNT  105 (161)
T ss_dssp             ------------------------------------------------CBTTBSCBCCCCCCSCCCSSSEEEECCSSTTC
T ss_pred             ------------------------------------------------ccccCccccccccccccccceeeeecccCCCC
Confidence                                                            22223445556667788999999999999999


Q ss_pred             CCceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        240 NGSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       240 ~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      ++|||||++++.|+||++|||||+|++||||            +|+.+| .|+.|||
T Consensus       106 ~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~~~~~P~~~i-~I~~CGe  161 (161)
T d2r99a1         106 NGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKV-IIADCGE  161 (161)
T ss_dssp             BCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCE-EEEEEEE
T ss_pred             cCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCCCCCcCCCCE-EEEeCCC
Confidence            9999999999999999999999999999994            678888 8999987

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=6.1e-36  Score=254.41  Aligned_cols=143  Identities=58%  Similarity=0.962  Sum_probs=124.0

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccC--------CCceecCceeEEeccCcccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE--------KGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRF   72 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~--------~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~   72 (287)
                      |||+|.++++|+|+||||.+.||+||+||++||+++        .++ |+++.||||++++                   
T Consensus         8 ~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~-y~~~~f~rv~~~~-------------------   67 (172)
T d2igva1           8 FDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLH-FKGSKFHRIIPNF-------------------   67 (172)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSC-CTTCBCCEEETTT-------------------
T ss_pred             EEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccc-cCCcceeEEEecc-------------------
Confidence            799999999999999999999999999999999763        568 9999999999999                   


Q ss_pred             ccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCc
Q psy13279         73 DFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGV  152 (287)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~  152 (287)
                                                                 ++|+|++...++++                       
T Consensus        68 -------------------------------------------~i~~G~~~~~~~~~-----------------------   81 (172)
T d2igva1          68 -------------------------------------------MIQGGDFTRGNGTG-----------------------   81 (172)
T ss_dssp             -------------------------------------------EEEECCTTTSSSSC-----------------------
T ss_pred             -------------------------------------------eEEcCCccCCCCCC-----------------------
Confidence                                                       89998865533222                       


Q ss_pred             eeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhh
Q psy13279        153 LSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSM  232 (287)
Q Consensus       153 l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsM  232 (287)
                                                                            +.++++..+.+|+....|+.+|+|||
T Consensus        82 ------------------------------------------------------~~~~~~~~~~~e~~~~~~~~~G~lsm  107 (172)
T d2igva1          82 ------------------------------------------------------GESIYGEKFPDENFKEKHTGPGVLSM  107 (172)
T ss_dssp             ------------------------------------------------------CCBTTBSCBCCCCCCSCCCSTTEEEE
T ss_pred             ------------------------------------------------------CcccCCCccCccccccccCCCcEEEE
Confidence                                                                  22333455777777778889999999


Q ss_pred             hhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        233 ANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       233 A~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      |+++|++++||||||+++.|+||++|||||+|++|||+            +|+.+| .|+.|||
T Consensus       108 a~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~~i-~I~~cG~  170 (172)
T d2igva1         108 ANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDC-MIADCGQ  170 (172)
T ss_dssp             CCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCE-EEEEEEE
T ss_pred             eecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCCCCCCCCCe-EEEeccc
Confidence            99999999999999999999999999999999999994            667788 8888886

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=250.34  Aligned_cols=144  Identities=58%  Similarity=1.048  Sum_probs=123.1

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||+|.++++|+|+||||.+.||+||+||++||.+.++..|+++.||||++++                           
T Consensus         7 ~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~---------------------------   59 (164)
T d2z6wa1           7 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSF---------------------------   59 (164)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTT---------------------------
T ss_pred             EEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccc---------------------------
Confidence            79999999999999999999999999999999965544339999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         ++|+|++...+++++                              
T Consensus        60 -----------------------------------~iq~g~~~~~~~~~~------------------------------   74 (164)
T d2z6wa1          60 -----------------------------------MCQAGDFTNHNGTGG------------------------------   74 (164)
T ss_dssp             -----------------------------------EEEECCTTTSSSSCC------------------------------
T ss_pred             -----------------------------------eEecCCccCCCCCCC------------------------------
Confidence                                               899998765333221                              


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                     ..+++..++++.....|+.+|+||||+.+++++
T Consensus        75 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~  107 (164)
T d2z6wa1          75 -----------------------------------------------KSIYGSRFPDENFTLKHVGPGVLSMANAGPNTN  107 (164)
T ss_dssp             -----------------------------------------------CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCB
T ss_pred             -----------------------------------------------ccccCCcCCccccccccCCccEEEEecCCCCCC
Confidence                                                           222344455666677788899999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      +|||||+++++|+||++|||||+|++|||+            +|+.+| .|..|||
T Consensus       108 ~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~~~P~~~i-~I~~cG~  162 (164)
T d2z6wa1         108 GSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKI-VITDCGQ  162 (164)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCE-EEEEEEE
T ss_pred             CcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCCCCCCCCE-EEEeCee
Confidence            999999999999999999999999999994            778888 8999987

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=1.6e-35  Score=249.56  Aligned_cols=143  Identities=55%  Similarity=0.887  Sum_probs=121.5

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||+|.++++|+|+||||.+.||+||+||++||.++.+++|+++.||||+|++                           
T Consensus         6 fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~rv~~~~---------------------------   58 (162)
T d2cfea1           6 FDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDF---------------------------   58 (162)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTT---------------------------
T ss_pred             EEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCCccCCCEEEEEEecc---------------------------
Confidence            79999999999999999999999999999999966666559999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         ++|+|++...++.+                               
T Consensus        59 -----------------------------------~iq~G~~~~~~~~~-------------------------------   72 (162)
T d2cfea1          59 -----------------------------------MLQGGDFTAGNGTG-------------------------------   72 (162)
T ss_dssp             -----------------------------------EEEECCTTTSSSSC-------------------------------
T ss_pred             -----------------------------------eEecCCCCCCCCCC-------------------------------
Confidence                                               89998876532221                               


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                    +.+++..++.+|+..++|+++|+||||+.+|+++
T Consensus        73 ----------------------------------------------~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~s~  106 (162)
T d2cfea1          73 ----------------------------------------------GKSIYGAKFADENFQLKHNKPGLLSMANAGPNTN  106 (162)
T ss_dssp             ----------------------------------------------CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCB
T ss_pred             ----------------------------------------------CcccCCCccccccCCCCCCCceEEEEeecCCCCC
Confidence                                                          2222344567777788899999999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCG  283 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~g  283 (287)
                      +|||||++++.|+||++|||||+|++||||            +|+.+| .|..||
T Consensus       107 ~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~P~~~i-~I~~cg  160 (162)
T d2cfea1         107 GSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRI-EIAKCG  160 (162)
T ss_dssp             SSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCE-EEEEEE
T ss_pred             CcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCCCCCCCCCCe-EEEeeE
Confidence            999999999999999999999999999995            556666 666665

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.3e-35  Score=251.91  Aligned_cols=143  Identities=50%  Similarity=0.809  Sum_probs=123.8

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccC-------CCceecCceeEEeccCccccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-------KGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFD   73 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~-------~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~   73 (287)
                      |||+|.+|++|+|+||||.+.||+||+||++||+++       .++ |+++.||||++++                    
T Consensus         8 ~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~-y~g~~~~rv~~~~--------------------   66 (170)
T d1qnga_           8 FDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLH-YKNSIFHRIIPQF--------------------   66 (170)
T ss_dssp             EEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEEC-CTTCBCCEEETTT--------------------
T ss_pred             EEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCc-cCcccceEEEeCc--------------------
Confidence            799999999999999999999999999999999653       567 9999999999999                    


Q ss_pred             cccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCce
Q psy13279         74 FAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVL  153 (287)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l  153 (287)
                                                                ++|+|++...+++++                       
T Consensus        67 ------------------------------------------~iq~g~~~~~~~~~~-----------------------   81 (170)
T d1qnga_          67 ------------------------------------------MCQGGDITNGNGSGG-----------------------   81 (170)
T ss_dssp             ------------------------------------------EEEECCTTTSSSSCC-----------------------
T ss_pred             ------------------------------------------eEEecCccCCCCCCC-----------------------
Confidence                                                      999998765332221                       


Q ss_pred             eccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhh
Q psy13279        154 SMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMA  233 (287)
Q Consensus       154 ~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA  233 (287)
                                                                            ...++..+.+|...++|+.+|+||||
T Consensus        82 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~G~lsma  107 (170)
T d1qnga_          82 ------------------------------------------------------ESIYGRSFTDENFNMKHDQPGLLSMA  107 (170)
T ss_dssp             ------------------------------------------------------CBTTBSCBCCCCCCSCCCSTTEEEEC
T ss_pred             ------------------------------------------------------cccCCCccccccccccCCCCeEEEEe
Confidence                                                                  12234456667777889999999999


Q ss_pred             hcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        234 NSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       234 ~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      +.+|++++||||||+++.|+||++|||||+|++|||+            +|+.+| .|+.|||
T Consensus       108 ~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~~i-~I~~CG~  169 (170)
T d1qnga_         108 NAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSV-VITDCGE  169 (170)
T ss_dssp             CSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCE-EEEEEEE
T ss_pred             ecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCCcCCccCE-EEEeeEc
Confidence            9999999999999999999999999999999999994            777888 8888986

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=1.2e-34  Score=248.63  Aligned_cols=144  Identities=51%  Similarity=0.843  Sum_probs=122.7

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||+|.++++|+|+||||.+.||+||+||++||++++..+|+++.||||++++                           
T Consensus        12 ~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~---------------------------   64 (182)
T d2rmca_          12 FDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDF---------------------------   64 (182)
T ss_dssp             EEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTT---------------------------
T ss_pred             EEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCc---------------------------
Confidence            69999999999999999999999999999999977655349999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         ++|+|++...++++                               
T Consensus        65 -----------------------------------~iq~G~~~~~~~~~-------------------------------   78 (182)
T d2rmca_          65 -----------------------------------MIQGGDFTARDGTG-------------------------------   78 (182)
T ss_dssp             -----------------------------------EEEECCCSSSSSSC-------------------------------
T ss_pred             -----------------------------------eEEcCCCCCCCCCC-------------------------------
Confidence                                               89998865432222                               


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                    +.++++..+.+++....|+.+|+||||+.+++++
T Consensus        79 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~  112 (182)
T d2rmca_          79 ----------------------------------------------GMSIYGETFPDENFKLKHYGIGWVSMANAGPDTN  112 (182)
T ss_dssp             ----------------------------------------------CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCB
T ss_pred             ----------------------------------------------CCCCcCCcccccccccccCCCccEehhhcCCCcc
Confidence                                                          2233455566777778888999999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      +|||||++++.++||++|||||+|++|||+             +|+.+| .|..||+
T Consensus       113 ~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v-~I~~~g~  168 (182)
T d2rmca_         113 GSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDC-TIVNSGK  168 (182)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCE-EEEEEEE
T ss_pred             CccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCCe-EEEEeeE
Confidence            999999999999999999999999999994             567777 7777764

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=246.20  Aligned_cols=142  Identities=51%  Similarity=0.852  Sum_probs=120.3

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCc-------eecCceeEEeccCccccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF-------GYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFD   73 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~-------~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~   73 (287)
                      |||+|.++++|+|+||||.+.||+||+||++||  +.+|       +|+++.||||+++|                    
T Consensus        11 ~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~--~~~~~~~~~~~~y~~~~f~rv~~~~--------------------   68 (173)
T d1qoia_          11 FDVSIGGQEVGRMKIELFADVVPKTAENFRQFC--TGEFRKDGVPIGYKGSTFHRVIKDF--------------------   68 (173)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHH--HSCCEETTEECSSTTCBCCEEETTT--------------------
T ss_pred             EEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhh--cccccccCCCCCcCCcccceeccce--------------------
Confidence            799999999999999999999999999999999  6665       59999999999999                    


Q ss_pred             cccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCce
Q psy13279         74 FAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVL  153 (287)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l  153 (287)
                                                                ++|+|++....+..                        
T Consensus        69 ------------------------------------------~~q~G~~~~~~~~~------------------------   82 (173)
T d1qoia_          69 ------------------------------------------MIQGGDFVNGDGTG------------------------   82 (173)
T ss_dssp             ------------------------------------------EEEECCTTTSSSCC------------------------
T ss_pred             ------------------------------------------eeccCCcccCCcce------------------------
Confidence                                                      88998865421111                        


Q ss_pred             eccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhh
Q psy13279        154 SMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMA  233 (287)
Q Consensus       154 ~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA  233 (287)
                                                                           ....++.++.++....+|+++|+|+||
T Consensus        83 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~G~l~ma  109 (173)
T d1qoia_          83 -----------------------------------------------------VASIYRGPFADENFKLRHSAPGLLSMA  109 (173)
T ss_dssp             -----------------------------------------------------CCCTTSSCBCCCCCCSCCCSTTEEEEC
T ss_pred             -----------------------------------------------------eecccCCcccccccccccCCCcEEEee
Confidence                                                                 011113335556666778899999999


Q ss_pred             hcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        234 NSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       234 ~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      +++|++++|||||++++.|+||++|||||+|++|||+             +|+.+| .|+.|||
T Consensus       110 ~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~i-~I~~cGe  172 (173)
T d1qoia_         110 NSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPV-VISQCGE  172 (173)
T ss_dssp             CSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCE-EEEEEEE
T ss_pred             ecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCCCCE-EEEcccC
Confidence            9999999999999999999999999999999999994             778889 8999987

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=3.1e-34  Score=243.89  Aligned_cols=143  Identities=48%  Similarity=0.799  Sum_probs=122.1

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccC---------CCceecCceeEEeccCccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE---------KGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFR   71 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~---------~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~   71 (287)
                      |||+|.++++|+|+||||.|.||+||+||++||+++         .++ |+++.||||++++                  
T Consensus         8 ~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~-Y~~~~f~Rv~~~~------------------   68 (174)
T d1a33a_           8 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNF------------------   68 (174)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTT------------------
T ss_pred             EEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccce-eCCceeeEEEeCC------------------
Confidence            799999999999999999999999999999999763         467 9999999999999                  


Q ss_pred             cccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCC
Q psy13279         72 FDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPG  151 (287)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G  151 (287)
                                                                  ++|+|+....++++                      
T Consensus        69 --------------------------------------------~iq~g~~~~~~~~~----------------------   82 (174)
T d1a33a_          69 --------------------------------------------MIQGGDFTKGDGTG----------------------   82 (174)
T ss_dssp             --------------------------------------------EEEECCTTTSSSSC----------------------
T ss_pred             --------------------------------------------EEeeCCCCCCCCCC----------------------
Confidence                                                        99999876532222                      


Q ss_pred             ceeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhh
Q psy13279        152 VLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLS  231 (287)
Q Consensus       152 ~l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~ls  231 (287)
                                                                             +.++++....++....+|+++|+++
T Consensus        83 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~g~l~  107 (174)
T d1a33a_          83 -------------------------------------------------------GESIYGGMFDDEEFVMKHDEPFVVS  107 (174)
T ss_dssp             -------------------------------------------------------CCCTTSSCBCCCCSCSCCCSTTEEE
T ss_pred             -------------------------------------------------------CCCccCccccccccccccCcceeee
Confidence                                                                   1122233344556678899999999


Q ss_pred             hhhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        232 MANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       232 MA~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      |++.+|++++|||||++++.|+||++|||||+|++||||             +|+.+| .|..|||
T Consensus       108 ~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P~~~i-~I~~cGe  172 (174)
T d1a33a_         108 MANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADV-VILNCGE  172 (174)
T ss_dssp             ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCE-EEEEEEE
T ss_pred             eeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCCCCCE-EEEeeEE
Confidence            999999999999999999999999999999999999994             678888 8999987

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=3.2e-34  Score=242.32  Aligned_cols=143  Identities=48%  Similarity=0.784  Sum_probs=118.8

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |||+|+++++|+|+||||.+.||+||+||++||+++.+.+|+++.|||+++++                           
T Consensus        10 ~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~---------------------------   62 (166)
T d1xo7a_          10 FDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNF---------------------------   62 (166)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTT---------------------------
T ss_pred             EEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCC---------------------------
Confidence            79999999999999999999999999999999977776679999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         ++|+|+....++.++.                             
T Consensus        63 -----------------------------------~iq~G~~~~~~~~~~~-----------------------------   78 (166)
T d1xo7a_          63 -----------------------------------MIQGGDFTNFDGTGGK-----------------------------   78 (166)
T ss_dssp             -----------------------------------EEEECCTTTSSSSCCC-----------------------------
T ss_pred             -----------------------------------EEEeCCCCCCCCCCCC-----------------------------
Confidence                                               9999987654333321                             


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                      ..++..++.+.. ..++.+|+|+||+.+|+++
T Consensus        79 ------------------------------------------------~~~~~~~~~~~~-~~~~~~G~l~~a~~g~~s~  109 (166)
T d1xo7a_          79 ------------------------------------------------SIYGTRFDDENL-KIKHFVGAVSMANAGPNSN  109 (166)
T ss_dssp             ------------------------------------------------BTTBSCBCCCCC-CSCCCTTEEEECCSSTTCB
T ss_pred             ------------------------------------------------CCCCcccccccc-cccccccceeecccCCCCC
Confidence                                                            111222333333 3455799999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      +|||||++++.|+||++|||||+|++|||+             +|+.+| .|+.||+
T Consensus       110 ~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~i-~I~~cgv  165 (166)
T d1xo7a_         110 GSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAV-KINDCGV  165 (166)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCE-EEEEEEE
T ss_pred             CCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCCE-EEEeeEe
Confidence            999999999999999999999999999994             677778 8888874

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=2.1e-34  Score=246.93  Aligned_cols=143  Identities=48%  Similarity=0.731  Sum_probs=122.1

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCC-CceecCceeEEeccCccccccccccccccccccccccccCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK-GFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGN   79 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~-g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   79 (287)
                      |||+|+++++|+|+||||.|.||+||+||++||.+.+ ++ |+++.||||+++|                          
T Consensus        11 ~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~-y~g~~f~rv~~~~--------------------------   63 (182)
T d1h0pa_          11 FDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-YPGSKFHRVIADF--------------------------   63 (182)
T ss_dssp             EEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTS-STTCBCCEEETTT--------------------------
T ss_pred             EEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcccCC-cCCceEEEEEecc--------------------------
Confidence            7999999999999999999999999999999996533 36 9999999999999                          


Q ss_pred             CccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccC
Q psy13279         80 RTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSG  159 (287)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~  159 (287)
                                                          ++|+|+....++++                              
T Consensus        64 ------------------------------------~iq~G~~~~~~~~g------------------------------   77 (182)
T d1h0pa_          64 ------------------------------------MIQGGDFTRGDGTG------------------------------   77 (182)
T ss_dssp             ------------------------------------EEEECCTTTSSSSC------------------------------
T ss_pred             ------------------------------------eEEcCCCCCCCCCC------------------------------
Confidence                                                99999876533222                              


Q ss_pred             CCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcCCCC
Q psy13279        160 PNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNT  239 (287)
Q Consensus       160 ~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~p~s  239 (287)
                                                                     +.+.++..+.++.....|+.+|+++||+.++++
T Consensus        78 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~G~~~~a~~g~~s  110 (182)
T d1h0pa_          78 -----------------------------------------------GRSIYGEKFADENFKLKHYGAGWLSMANAGADT  110 (182)
T ss_dssp             -----------------------------------------------CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTC
T ss_pred             -----------------------------------------------CCCCCCCccCcccccccccCCceeeecccCCCC
Confidence                                                           233344556666677788899999999999999


Q ss_pred             CCceEEEEcCCCCCCCCCccEEEEeeecccc-------------ccceeeeeeecCCC
Q psy13279        240 NGSQFFLCTTKQEICVKLLDLLASLDAGWET-------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       240 ~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv-------------~~~~~~~~~~~~ge  284 (287)
                      ++|||||++++.|+||++|||||||++|||+             +|..+| .|..||+
T Consensus       111 ~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v-~I~~cG~  167 (182)
T d1h0pa_         111 NGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDV-IIAASGH  167 (182)
T ss_dssp             BCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSCE-EEEEEEE
T ss_pred             cCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCCE-EEEECCe
Confidence            9999999999999999999999999999994             677778 7888874

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.4e-34  Score=246.57  Aligned_cols=143  Identities=52%  Similarity=0.848  Sum_probs=122.5

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccC---------CCceecCceeEEeccCccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE---------KGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFR   71 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~---------~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~   71 (287)
                      |||+|+++++|+|+||||.+.||+||+||++||+++         .++ |+++.||||++++                  
T Consensus        19 ~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~-y~g~~f~rv~~~~------------------   79 (195)
T d1ihga2          19 FDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLH-FKGCPFHRIIKKF------------------   79 (195)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSC-CTTCBEEEEETTT------------------
T ss_pred             EEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccc-cCCceeeEEEcCc------------------
Confidence            799999999999999999999999999999999654         346 9999999999999                  


Q ss_pred             cccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCC
Q psy13279         72 FDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPG  151 (287)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G  151 (287)
                                                                  ++|+|+.....+.++                     
T Consensus        80 --------------------------------------------~i~~G~~~~~~~~~~---------------------   94 (195)
T d1ihga2          80 --------------------------------------------MIQGGDFSNQNGTGG---------------------   94 (195)
T ss_dssp             --------------------------------------------EEEECCTTTSSSSCC---------------------
T ss_pred             --------------------------------------------eeecCCccCCCCCCC---------------------
Confidence                                                        899988655332221                     


Q ss_pred             ceeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhh
Q psy13279        152 VLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLS  231 (287)
Q Consensus       152 ~l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~ls  231 (287)
                                                                              ...++.++.+|....+|+.+|+|+
T Consensus        95 --------------------------------------------------------~~~~~~~~~~~~~~~~h~~~G~ls  118 (195)
T d1ihga2          95 --------------------------------------------------------ESIYGEKFEDENFHYKHDKEGLLS  118 (195)
T ss_dssp             --------------------------------------------------------CBTTBSCBCCCCCCBCCCSTTEEE
T ss_pred             --------------------------------------------------------ccCCCCcccccccCcccCcceEEe
Confidence                                                                    112244566777778899999999


Q ss_pred             hhhcCCCCCCceEEEEcCCCCCCCCCccEEEEeeecccc------------ccceeeeeeecCCC
Q psy13279        232 MANSGPNTNGSQFFLCTTKQEICVKLLDLLASLDAGWET------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       232 MA~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv------------~~~~~~~~~~~~ge  284 (287)
                      |++.++++++||||||+++.++||++|||||||++|||+            +|+.+| .|+.||+
T Consensus       119 m~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~~~P~~~i-~I~~cG~  182 (195)
T d1ihga2         119 MANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLC-VIAECGE  182 (195)
T ss_dssp             ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESSCE-EEEEEEE
T ss_pred             eeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCCCCcCCCe-EEEECcc
Confidence            999999999999999999999999999999999999994            567788 8888875

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-34  Score=238.30  Aligned_cols=126  Identities=46%  Similarity=0.716  Sum_probs=106.0

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCC
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNR   80 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (287)
                      |.|. ..|++|+|+||||.+.||+||+||++||  +.+| |+++.||||+++|                           
T Consensus         1 msV~-~~T~~G~i~ieL~~~~aP~tv~nF~~L~--~~g~-Y~~~~f~rv~~~~---------------------------   49 (159)
T d2ok3a1           1 MSVT-LHTDVGDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGF---------------------------   49 (159)
T ss_dssp             CEEE-EEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTT---------------------------
T ss_pred             CEEE-EEeCCeEEEEEEcCCCChHHHHHHHHHH--hhhc-ccceeEecccCCe---------------------------
Confidence            4443 4899999999999999999999999999  8899 9999999999999                           


Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCC
Q psy13279         81 TRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGP  160 (287)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~  160 (287)
                                                         ++|+||+.... .+                               
T Consensus        50 -----------------------------------~iq~Gd~~~~~-~~-------------------------------   62 (159)
T d2ok3a1          50 -----------------------------------MVQTGDPTGTG-RG-------------------------------   62 (159)
T ss_dssp             -----------------------------------EEEECCTTSSS-SC-------------------------------
T ss_pred             -----------------------------------EEEeCCccccC-CC-------------------------------
Confidence                                               99999865421 11                               


Q ss_pred             CCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchhhhhhhhcCCCC
Q psy13279        161 NTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNT  239 (287)
Q Consensus       161 ~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G~lsMA~~~p~s  239 (287)
                                                                    +...++..+..| +..++|+++|+|||||.+|++
T Consensus        63 ----------------------------------------------~~~~~~~~~~~e~~~~~~~~~~G~lsma~~~~~s   96 (159)
T d2ok3a1          63 ----------------------------------------------GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNT   96 (159)
T ss_dssp             ----------------------------------------------CCCTTSSCBCCCCCTTCCSCSTTEEEECCSSTTC
T ss_pred             ----------------------------------------------CcccCCCccccccccCCCCCCCeEEEEeeCCCCC
Confidence                                                          111223344444 345788899999999999999


Q ss_pred             CCceEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        240 NGSQFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       240 ~~SQFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ++||||||+++.|+||++|||||||++|||+
T Consensus        97 ~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~v  127 (159)
T d2ok3a1          97 NGSQFFITYGKQPHLDMKYTVFGKVIDGLET  127 (159)
T ss_dssp             BCSCEEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             cCcceEeeeccCcccccceEEEEecccchHH
Confidence            9999999999999999999999999999995

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.98  E-value=2.6e-33  Score=240.93  Aligned_cols=144  Identities=47%  Similarity=0.777  Sum_probs=120.6

Q ss_pred             CceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCC-----ceecCceeEEeccCccccccccccccccccccccccc
Q psy13279          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-----FGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFA   75 (287)
Q Consensus         1 ~d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g-----~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~   75 (287)
                      |||+|+++++|+|+||||.|.||+||+||++||+++.+     ++|+++.||||++++                      
T Consensus        21 ~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~----------------------   78 (186)
T d1z81a1          21 MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF----------------------   78 (186)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTT----------------------
T ss_pred             EEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecce----------------------
Confidence            79999999999999999999999999999999954431     249999999999999                      


Q ss_pred             cCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceec
Q psy13279         76 AGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSM  155 (287)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~m  155 (287)
                                                              ++|+|++....+.+.                         
T Consensus        79 ----------------------------------------~i~~G~~~~~~~~~~-------------------------   93 (186)
T d1z81a1          79 ----------------------------------------MIQGGDFINHNGSGS-------------------------   93 (186)
T ss_dssp             ----------------------------------------EEEECCTTTSSSCCC-------------------------
T ss_pred             ----------------------------------------eeecCCccccCCccc-------------------------
Confidence                                                    999998765222111                         


Q ss_pred             cccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhc
Q psy13279        156 ANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS  235 (287)
Q Consensus       156 a~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~  235 (287)
                                                                          ..+++..+.++....+|+++|+++|++.
T Consensus        94 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~G~~~~~~~  121 (186)
T d1z81a1          94 ----------------------------------------------------LSIYGEKFDDENFDIKHDKEGLLSMANS  121 (186)
T ss_dssp             ----------------------------------------------------CBTTBSCCCCCCCCSCCCSTTEEEECCS
T ss_pred             ----------------------------------------------------ccccCCcccccccccccCCCccchhhhc
Confidence                                                                1122344566677788999999999999


Q ss_pred             CCCCCCceEEEEcCCCCCCCCCccEEEEeeec--ccc--------------ccceeeeeeecCCC
Q psy13279        236 GPNTNGSQFFLCTTKQEICVKLLDLLASLDAG--WET--------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       236 ~p~s~~SQFFIt~g~~~~LD~~ytVfG~VieG--~dv--------------~~~~~~~~~~~~ge  284 (287)
                      +|++++|||||++++.|+||++|||||+|++|  ||+              +|..+| .|..|||
T Consensus       122 g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~~P~~~i-~I~~CGe  185 (186)
T d1z81a1         122 GPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPI-NVVECGE  185 (186)
T ss_dssp             SSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCE-EEEEEEE
T ss_pred             CCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCCccCCCE-EEEeCCc
Confidence            99999999999999999999999999999999  873              577788 8888886

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=99.98  E-value=7.5e-34  Score=241.27  Aligned_cols=144  Identities=49%  Similarity=0.815  Sum_probs=99.9

Q ss_pred             CceE-----ECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccc
Q psy13279          1 MDIK-----IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFA   75 (287)
Q Consensus         1 ~d~~-----i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~   75 (287)
                      |||.     +.+|++|+|+||||.+.||+||+||++||+++.+-+|+++.||||+++|                      
T Consensus         6 ~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~y~~~~f~ri~~~~----------------------   63 (171)
T d2c3ba1           6 FDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNF----------------------   63 (171)
T ss_dssp             EEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTT----------------------
T ss_pred             EeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccccccCceeeEEEEEE----------------------
Confidence            4665     7889999999999999999999999999954443359999999999999                      


Q ss_pred             cCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceec
Q psy13279         76 AGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSM  155 (287)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~m  155 (287)
                                                              ++|+||+...++.+                          
T Consensus        64 ----------------------------------------~iq~G~~~~~~~~~--------------------------   77 (171)
T d2c3ba1          64 ----------------------------------------MIQGGDFTRGNGTG--------------------------   77 (171)
T ss_dssp             ----------------------------------------EEEECC----------------------------------
T ss_pred             ----------------------------------------eeEcCCccCCCCCC--------------------------
Confidence                                                    99999876522211                          


Q ss_pred             cccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhc
Q psy13279        156 ANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS  235 (287)
Q Consensus       156 a~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~  235 (287)
                                                                         +.++++..+.++...++|+++|+||||+.
T Consensus        78 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~G~lsma~~  106 (171)
T d2c3ba1          78 ---------------------------------------------------GRSIYGDKFADENFSRKHDKKGILSMANA  106 (171)
T ss_dssp             -----------------------------------------------------------------CHHHHHTCEEEEC--
T ss_pred             ---------------------------------------------------CCcCCCCccccccccccCCCCceEEeeec
Confidence                                                               11122344555667788999999999999


Q ss_pred             CCCCCCceEEEEcCCCCCCCCCccEEEEeee--cccc--------------ccceeeeeeecCCC
Q psy13279        236 GPNTNGSQFFLCTTKQEICVKLLDLLASLDA--GWET--------------RGVWKCHQWNGCGE  284 (287)
Q Consensus       236 ~p~s~~SQFFIt~g~~~~LD~~ytVfG~Vie--G~dv--------------~~~~~~~~~~~~ge  284 (287)
                      +|++++||||||+++.|+||++|||||+|++  ||||              ++..++ +|..|||
T Consensus       107 ~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~~~p~~~v-~I~~cGe  170 (171)
T d2c3ba1         107 GPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRP-KIVNCGE  170 (171)
T ss_dssp             -------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCC-EEEEEEE
T ss_pred             CCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCCCCcCCCCCE-EEEeCcc
Confidence            9999999999999999999999999999995  9983              456667 7888876

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.98  E-value=6e-33  Score=231.82  Aligned_cols=124  Identities=42%  Similarity=0.655  Sum_probs=106.1

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      +++.|++|+|+||||.+.||+||+||++||  +.+| |+|+.||||+++|                              
T Consensus         4 ~~i~T~~G~i~ieL~~~~aP~tv~nF~~l~--~~g~-Y~g~~f~rv~~~~------------------------------   50 (155)
T d2fu0a1           4 AIIYTTMGDIHISLFYKECKKTVQNFSVHS--INGY-YNNCIFHRVIKHF------------------------------   50 (155)
T ss_dssp             EEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTT------------------------------
T ss_pred             EEEEEcccEEEEEEcCCCChHHHHHHhhHh--hCCc-cccceeeeeeecc------------------------------
Confidence            578999999999999999999999999999  8899 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      ++|+||+.. .+.+                                  
T Consensus        51 --------------------------------~iq~Gd~~~-~~~~----------------------------------   63 (155)
T d2fu0a1          51 --------------------------------MVQTGDPSG-DGTG----------------------------------   63 (155)
T ss_dssp             --------------------------------EEEECCTTS-SSSC----------------------------------
T ss_pred             --------------------------------eeeccCCCC-CCcC----------------------------------
Confidence                                            999998653 1111                                  


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccccc-ccccCchhhhhhhhcCCCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~-~~~h~~~G~lsMA~~~p~s~~S  242 (287)
                                                                 +.+.++..+++|.. .+.|.+.|+++|++.+|++++|
T Consensus        64 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s  100 (155)
T d2fu0a1          64 -------------------------------------------GESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGS  100 (155)
T ss_dssp             -------------------------------------------CCCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCS
T ss_pred             -------------------------------------------CcccCCCccccccccccccCCccEEEecccCCCCCCc
Confidence                                                       12233444555543 5677778899999999999999


Q ss_pred             eEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        243 QFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       243 QFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||||++++.|+||++|||||+|++|||+
T Consensus       101 qFfI~~~~~~~ld~~~tvFG~Vi~G~~v  128 (155)
T d2fu0a1         101 QFFITTVPCPWLDFKHTVFGKVTQGSKI  128 (155)
T ss_dssp             CEEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             cceecccCccccccceEEEEEEeccHHH
Confidence            9999999999999999999999999996

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-33  Score=235.28  Aligned_cols=124  Identities=44%  Similarity=0.739  Sum_probs=106.2

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      .+.+|++|+|+||||.+.||+||+||++||  +.+| |+++.||||+++|                              
T Consensus        14 v~~~T~~G~i~ieL~~~~aP~tv~nF~~L~--~~g~-Y~g~~f~rv~~~~------------------------------   60 (166)
T d1xwna1          14 VYLETSMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDF------------------------------   60 (166)
T ss_dssp             EEEEESSCEEEEEECTTTCHHHHHHHHHHH--HHTS-STTCCEEEEETTT------------------------------
T ss_pred             EEEEECceeEEEEEcCCCChHHHHHHHHHH--hcCC-cCceeeeEEcccE------------------------------
Confidence            467899999999999999999999999999  8999 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      ++|+||+.. .+.+                                  
T Consensus        61 --------------------------------~iq~Gd~~~-~~~~----------------------------------   73 (166)
T d1xwna1          61 --------------------------------MIQGGDPTG-TGRG----------------------------------   73 (166)
T ss_dssp             --------------------------------EEEECCSTT-TTSS----------------------------------
T ss_pred             --------------------------------EEEeCCCCC-CCCC----------------------------------
Confidence                                            999998654 2222                                  


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchhhhhhhhcCCCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G~lsMA~~~p~s~~S  242 (287)
                                                                 +.++++..+.+| +..+.|+++|+||||+.+|++++|
T Consensus        74 -------------------------------------------~~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~s  110 (166)
T d1xwna1          74 -------------------------------------------GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGS  110 (166)
T ss_dssp             -------------------------------------------CCCSSCSCCCCCCCTTCCSCSSSEEEEEEEETTEEEE
T ss_pred             -------------------------------------------CccCCCCccccccCCCCCCCCCeEEEecccCCCCCCc
Confidence                                                       112223445555 345678889999999999999999


Q ss_pred             eEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        243 QFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       243 QFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||||++++.++||++|||||+|++||||
T Consensus       111 qFfI~~~~~~~ld~~~tvFG~Vi~G~dv  138 (166)
T d1xwna1         111 QFFVTLAPTQWLDGKHTIFGRVCQGIGM  138 (166)
T ss_dssp             EEEEECSCCSTTTTTSEEEEECSSCHHH
T ss_pred             ceEEeecChhhccccceEEEEEechHHH
Confidence            9999999999999999999999999997

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.8e-32  Score=233.02  Aligned_cols=123  Identities=44%  Similarity=0.733  Sum_probs=106.1

Q ss_pred             ECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccCC
Q psy13279          5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRHS   84 (287)
Q Consensus         5 i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (287)
                      -..|++|+|+||||.+.||+||+||++||  +.++ |+++.||||+++|                               
T Consensus         4 ~l~T~~G~i~IeL~~~~aP~tv~nF~~L~--~~~~-Y~g~~f~rv~~~~-------------------------------   49 (178)
T d1zkca1           4 RLHTNKGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNF-------------------------------   49 (178)
T ss_dssp             EEEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTT-------------------------------
T ss_pred             EEEeCCEEEEEEEcCCCChHHHHHHHHHH--hcCC-cCceEeeecccee-------------------------------
Confidence            45799999999999999999999999999  8999 9999999999999                               


Q ss_pred             CCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCCC
Q psy13279         85 FPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTNG  164 (287)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~  164 (287)
                                                     ++|+||+.. +++++                                  
T Consensus        50 -------------------------------~iq~Gd~~~-~~~~~----------------------------------   63 (178)
T d1zkca1          50 -------------------------------VIQGGDPTG-TGTGG----------------------------------   63 (178)
T ss_dssp             -------------------------------EEEECCTTS-SSSCC----------------------------------
T ss_pred             -------------------------------EEecCCccC-CCCCC----------------------------------
Confidence                                           999998654 22221                                  


Q ss_pred             CceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCce
Q psy13279        165 SQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGSQ  243 (287)
Q Consensus       165 SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~SQ  243 (287)
                                                                 .+.++.++.+|. ..++|+.+|+||||++++++++||
T Consensus        64 -------------------------------------------~~~~~~~~~~E~~~~l~~~~~G~lsma~~~~~s~~sq  100 (178)
T d1zkca1          64 -------------------------------------------ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQ  100 (178)
T ss_dssp             -------------------------------------------CBTTBSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSC
T ss_pred             -------------------------------------------cccCCCCcCCccccccCCCCCeEEEEeecCCCCccce
Confidence                                                       122344566663 457888899999999999999999


Q ss_pred             EEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        244 FFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       244 FFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      |||++++.++||++|||||+|++|||+
T Consensus       101 F~It~~~~~~ld~~~~vFG~Vv~G~dv  127 (178)
T d1zkca1         101 FFITFRSCAYLDKKHTIFGRVVGGFDV  127 (178)
T ss_dssp             EEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             eeccccCCcccCCcceEEEEeeCcHHH
Confidence            999999999999999999999999996

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.97  E-value=5.1e-32  Score=229.48  Aligned_cols=124  Identities=44%  Similarity=0.716  Sum_probs=104.2

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      ....|++|+|+||||.+.||+||+||++||  +.+| |+++.||||+++|                              
T Consensus        19 V~l~T~~G~i~IeL~~d~aP~tv~nF~~L~--~~g~-Y~~~~f~rv~~~~------------------------------   65 (169)
T d2b71a1          19 ITIYTNLGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNF------------------------------   65 (169)
T ss_dssp             EEEEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTT------------------------------
T ss_pred             EEEEeCceeEEEEEeCCCCcHHHHHHHHHh--hCCc-cceeeecccccee------------------------------
Confidence            456899999999999999999999999999  9999 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      ++|+|+.... +.+                                  
T Consensus        66 --------------------------------~iq~g~~~~~-~~~----------------------------------   78 (169)
T d2b71a1          66 --------------------------------VIQGGDPTGT-GKG----------------------------------   78 (169)
T ss_dssp             --------------------------------EEEEEETTSS-SSC----------------------------------
T ss_pred             --------------------------------eEeccccccc-cCC----------------------------------
Confidence                                            8888876541 111                                  


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccc-cccccCchhhhhhhhcCCCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~-~~~~h~~~G~lsMA~~~p~s~~S  242 (287)
                                                                 +.+++...+.+|. ..++|.++|+|||++.+|++++|
T Consensus        79 -------------------------------------------~~~~~~~~~~~e~~~~l~h~~~g~ls~~~~~p~s~~s  115 (169)
T d2b71a1          79 -------------------------------------------GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSS  115 (169)
T ss_dssp             -------------------------------------------CCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSS
T ss_pred             -------------------------------------------CccccccccccccccccCCCCcEEEEhhhCCCCCCCC
Confidence                                                       1111122344442 35788899999999999999999


Q ss_pred             eEEEEcCCCCCCCCCccEEEEeeecccc
Q psy13279        243 QFFLCTTKQEICVKLLDLLASLDAGWET  270 (287)
Q Consensus       243 QFFIt~g~~~~LD~~ytVfG~VieG~dv  270 (287)
                      ||||++++.|+||++|||||+|++|||+
T Consensus       116 qFfIt~~~~~~ld~~~tvFG~Vv~G~dv  143 (169)
T d2b71a1         116 QFFITLAPLPHLDGKHTIFARVSKNMTC  143 (169)
T ss_dssp             CEEEESSCCGGGTTTSCEEEEEEECHHH
T ss_pred             EEEEecCCcchhhhhcceeeEEeccHHH
Confidence            9999999999999999999999999996

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-31  Score=223.35  Aligned_cols=130  Identities=39%  Similarity=0.581  Sum_probs=107.1

Q ss_pred             ceEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCc
Q psy13279          2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRT   81 (287)
Q Consensus         2 d~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (287)
                      |.++++|++|+|+||||.+.||+||+||++||  +.++ |+++.||||+++|                            
T Consensus        10 ~~a~~~T~~G~i~ieL~~~~aP~tv~nF~~l~--~~g~-Y~g~~f~rv~~~~----------------------------   58 (164)
T d2a2na1          10 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGF----------------------------   58 (164)
T ss_dssp             SEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTT----------------------------
T ss_pred             CEEEEEeceeEEEEEEcCCCChHHHHHHHHHH--hCCC-cccceeeEEeeee----------------------------
Confidence            67899999999999999999999999999999  9999 9999999999999                            


Q ss_pred             cCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCC
Q psy13279         82 RHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPN  161 (287)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~  161 (287)
                                                        ++|+|++......+..                              
T Consensus        59 ----------------------------------~iq~G~~~~~~~~~~~------------------------------   74 (164)
T d2a2na1          59 ----------------------------------MIQTGDPTGTGMGGES------------------------------   74 (164)
T ss_dssp             ----------------------------------EEEECCTTSSSSCCCC------------------------------
T ss_pred             ----------------------------------eEeecccccccCCCce------------------------------
Confidence                                              8999886541110000                              


Q ss_pred             CCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchhhhhhhhcCCCCC
Q psy13279        162 TNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTN  240 (287)
Q Consensus       162 s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G~lsMA~~~p~s~  240 (287)
                                                                      .....+..| ...++|+..|+++|++.+++++
T Consensus        75 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~  106 (164)
T d2a2na1          75 ------------------------------------------------IWGGEFEDEFHSTLRHDRPYTLSMANAGSNTN  106 (164)
T ss_dssp             ------------------------------------------------TTSSCBCCCCCTTCCSCSSSEEEECCSSTTCB
T ss_pred             ------------------------------------------------eeecccccccccccccCccceeehhhcCCCCC
Confidence                                                            001112222 3456788899999999999999


Q ss_pred             CceEEEEcCCCCCCCCCccEEEEeeeccccccceee
Q psy13279        241 GSQFFLCTTKQEICVKLLDLLASLDAGWETRGVWKC  276 (287)
Q Consensus       241 ~SQFFIt~g~~~~LD~~ytVfG~VieG~dv~~~~~~  276 (287)
                      +|||||++++.|+||++|||||+|++|||+  +++|
T Consensus       107 ~sqFfI~~~~~~~ld~~~tVFG~V~~G~dv--v~~I  140 (164)
T d2a2na1         107 GSQFFITVVPTPWLDNKHTVFGRVTKGMEV--VQRI  140 (164)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHH--HHHH
T ss_pred             cccceecccCccccccceeEEEEecChHHH--HHHH
Confidence            999999999999999999999999999997  3444

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7e-31  Score=221.62  Aligned_cols=122  Identities=25%  Similarity=0.420  Sum_probs=102.2

Q ss_pred             EECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCccC
Q psy13279          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTRH   83 (287)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (287)
                      .+++|+.|+|+||||.+.||+||+||++||  +.+| |+++.||||+++|                              
T Consensus         7 V~l~T~~G~i~ieL~~~~aP~tv~nF~~L~--~~~~-Y~g~~fhRv~~~~------------------------------   53 (166)
T d1v9ta_           7 VLLTTSAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGF------------------------------   53 (166)
T ss_dssp             EEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTT------------------------------
T ss_pred             EEEEECCeeEEEEEeCCCChHHHHHHHHHh--hCCc-cccceeeEEEEEe------------------------------
Confidence            567999999999999999999999999999  8999 9999999999999                              


Q ss_pred             CCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCCC
Q psy13279         84 SFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNTN  163 (287)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s~  163 (287)
                                                      ++|+|+.....+.+                                  
T Consensus        54 --------------------------------~iq~G~~~~~~~~~----------------------------------   67 (166)
T d1v9ta_          54 --------------------------------MIQGGGFTEQMQQK----------------------------------   67 (166)
T ss_dssp             --------------------------------EEEESSBCTTCCBC----------------------------------
T ss_pred             --------------------------------ecccCCcCCccccc----------------------------------
Confidence                                            89988764411100                                  


Q ss_pred             CCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhcC-CCCCCc
Q psy13279        164 GSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSG-PNTNGS  242 (287)
Q Consensus       164 ~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~~-p~s~~S  242 (287)
                                                                    .++.++.+|.....++.+|.|+|++.+ +++++|
T Consensus        68 ----------------------------------------------~~~~~~~~e~~~~~~~~rg~v~~~~~~~~~s~~s  101 (166)
T d1v9ta_          68 ----------------------------------------------KPNPPIKNEADNGLRNTRGTIAMARTADKDSATS  101 (166)
T ss_dssp             ----------------------------------------------CCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCS
T ss_pred             ----------------------------------------------CCCCCccccccccccccCCEEEEEeeecCCCccc
Confidence                                                          113446666655566679999999855 999999


Q ss_pred             eEEEEcCCCCCCCC-----CccEEEEeeecccc
Q psy13279        243 QFFLCTTKQEICVK-----LLDLLASLDAGWET  270 (287)
Q Consensus       243 QFFIt~g~~~~LD~-----~ytVfG~VieG~dv  270 (287)
                      ||||++++.|+||+     +|||||+|++|||+
T Consensus       102 qFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dv  134 (166)
T d1v9ta_         102 QFFINVADNAFLDHGQRDFGYAVFGKVVKGMDV  134 (166)
T ss_dssp             CEEEESSCCGGGSCCSSCCCCCEEEEEEECHHH
T ss_pred             ccccccCCccccccccccCCEEEeeEEeccHHH
Confidence            99999999999985     58999999999994

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.8e-30  Score=218.67  Aligned_cols=123  Identities=27%  Similarity=0.404  Sum_probs=101.1

Q ss_pred             eEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCCceecCceeEEeccCccccccccccccccccccccccccCCCCcc
Q psy13279          3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKRQSLKSRFSKFRFDFAAGGNRTR   82 (287)
Q Consensus         3 ~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (287)
                      |....|+.|+|+||||.+.||+||+||++||  +.+| |+|+.||||+++|                             
T Consensus         1 ~V~l~T~~G~i~ieL~~~~aP~t~~nF~~l~--~~g~-Y~g~~fhrv~~~~-----------------------------   48 (164)
T d1lopa_           1 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGF-----------------------------   48 (164)
T ss_dssp             CEEEEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEECCEEETTT-----------------------------
T ss_pred             CEEEEeCCeEEEEEEcCCCCHHHHHHHHHHH--HccC-cCCceeeEEcCCc-----------------------------
Confidence            3467899999999999999999999999999  9999 9999999999999                             


Q ss_pred             CCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccCCCceeccccCCCC
Q psy13279         83 HSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTGPGVLSMANSGPNT  162 (287)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~~G~l~ma~~~~~s  162 (287)
                                                       ++|+||+....+.+                                 
T Consensus        49 ---------------------------------~iq~G~~~~~~~~~---------------------------------   62 (164)
T d1lopa_          49 ---------------------------------MIQGGGFEPGMKQK---------------------------------   62 (164)
T ss_dssp             ---------------------------------EEEESSEETTTEEC---------------------------------
T ss_pred             ---------------------------------eeeeeccccCCcCC---------------------------------
Confidence                                             88988753210000                                 


Q ss_pred             CCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCcccccccccccCchhhhhhhhc-CCCCCC
Q psy13279        163 NGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANS-GPNTNG  241 (287)
Q Consensus       163 ~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E~~~~~h~~~G~lsMA~~-~p~s~~  241 (287)
                                                                     .++.++.+|.....+|.+|.|+||++ +|++++
T Consensus        63 -----------------------------------------------~~~~~~~~e~~~~~~h~~g~l~~~~~~~~~~~~   95 (164)
T d1lopa_          63 -----------------------------------------------ATKEPIKNEANNGLKNTRGTLAMARTQAPHSAT   95 (164)
T ss_dssp             -----------------------------------------------CCCCCBCCCCCSSCCCCTTEEEECCCSSTTCBC
T ss_pred             -----------------------------------------------ccCCCccccccccccceeeEEEEeccCCCCCcc
Confidence                                                           01334556655455667999999976 499999


Q ss_pred             ceEEEEcCCC--------CCCCCCccEEEEeeecccc
Q psy13279        242 SQFFLCTTKQ--------EICVKLLDLLASLDAGWET  270 (287)
Q Consensus       242 SQFFIt~g~~--------~~LD~~ytVfG~VieG~dv  270 (287)
                      |||||++++.        |+||++|||||+|++|||+
T Consensus        96 sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dv  132 (164)
T d1lopa_          96 AQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDE  132 (164)
T ss_dssp             SCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHH
T ss_pred             ceeeeeccccccccccCCCcCCCceeecCEEeccHHH
Confidence            9999999765        7899999999999999996

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=5.2e-30  Score=216.96  Aligned_cols=124  Identities=39%  Similarity=0.583  Sum_probs=101.7

Q ss_pred             eEECceEeeEEEEEEeCCCChHHHHHHHHHHccCCC-------------ceecCceeEEeccCccccccccccccccccc
Q psy13279          3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-------------FGYQGSSFHRIIPDFVSFMTKRQSLKSRFSK   69 (287)
Q Consensus         3 ~~i~~t~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g-------------~~Y~g~~f~rvi~~~~~~~g~~~~~~~~~~~   69 (287)
                      -++.+|+.|+|+||||.|.||+||+||++||++.++             | |+++.|||+++++                
T Consensus         5 ~~ti~T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~----------------   67 (171)
T d1w74a_           5 TATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPF-YDGAVFHRVIQGF----------------   67 (171)
T ss_dssp             EEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCS-STTEEEEEEETTT----------------
T ss_pred             EEEEEECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCce-ECCeecccccCCc----------------
Confidence            367899999999999999999999999999965432             6 9999999999999                


Q ss_pred             cccccccCCCCccCCCCCCCCcccccCCCCCCCCCccccccCccCcEEeeCCCCCCCCCCCccccCcccccCcccccccC
Q psy13279         70 FRFDFAAGGNRTRHSFPIPLPMKYIRPCLDCGSKGTFQSHSSRINKMCQGGDFTNHNGTGGKSIYGNKFEDENFVLKHTG  149 (287)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~g~~~~~~~~g~~~~~~~~~~~e~~~~~h~~  149 (287)
                                                                    ++|+|++.. .+.+..                  
T Consensus        68 ----------------------------------------------~iq~g~~~~-~~~~~~------------------   82 (171)
T d1w74a_          68 ----------------------------------------------MIQGGDPTG-TGRGGP------------------   82 (171)
T ss_dssp             ----------------------------------------------EEEECCTTS-SSSCCS------------------
T ss_pred             ----------------------------------------------eeEcccccC-CCCCCc------------------
Confidence                                                          899988654 111100                  


Q ss_pred             CCceeccccCCCCCCCceeEEeeeccceeeeEEEEEEeeeeeeeeeccccccCCCCCcccccCCccccc-ccccccCchh
Q psy13279        150 PGVLSMANSGPNTNGSQFFLCTTSINKHYYYYYYYIFLTRFTQMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPG  228 (287)
Q Consensus       150 ~G~l~ma~~~~~s~~SqFfI~l~~~g~~~vfG~v~~g~~vi~~m~QgGd~~~~~G~gg~si~g~~~~~E-~~~~~h~~~G  228 (287)
                                                                                    ...+.+| ...++|+++|
T Consensus        83 --------------------------------------------------------------~~~~~~e~~~~~~~~~~g  100 (171)
T d1w74a_          83 --------------------------------------------------------------GYKFADEFHPELQFDKPY  100 (171)
T ss_dssp             --------------------------------------------------------------SCCBCCCCCTTCCSCSSS
T ss_pred             --------------------------------------------------------------ccccccccCCCcCCCCCE
Confidence                                                                          0012222 3456788899


Q ss_pred             hhhhhhcCCCCCCceEEEEcCCCCCCCCCccEEEEee--ecccc
Q psy13279        229 VLSMANSGPNTNGSQFFLCTTKQEICVKLLDLLASLD--AGWET  270 (287)
Q Consensus       229 ~lsMA~~~p~s~~SQFFIt~g~~~~LD~~ytVfG~Vi--eG~dv  270 (287)
                      +++|++.+|++++|||||++++.|+||++|||||||+  |||||
T Consensus       101 ~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdv  144 (171)
T d1w74a_         101 LLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRV  144 (171)
T ss_dssp             EEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHH
T ss_pred             EEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHH
Confidence            9999999999999999999999999999999999999  59996

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=99.23  E-value=2.7e-12  Score=106.32  Aligned_cols=63  Identities=49%  Similarity=0.714  Sum_probs=55.6

Q ss_pred             CcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        135 GNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       135 ~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      ...+.+|+..++|+++|+|+||+.++++++|||||++.+.    ++|++||+|.++++++++|...+
T Consensus        78 ~~~~~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~  144 (162)
T d2cfea1          78 GAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEG  144 (162)
T ss_dssp             BSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC
T ss_pred             CCccccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCC
Confidence            4456778888999999999999999999999999999986    89999999999999998875543

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.23  E-value=2.4e-12  Score=107.28  Aligned_cols=63  Identities=44%  Similarity=0.676  Sum_probs=55.8

Q ss_pred             CcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        135 GNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       135 ~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +..++++...++|+.+|+|+||+.++++++|||||++.+.    ++|++||+|+++++++++|...+
T Consensus        86 ~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~  152 (170)
T d1qnga_          86 GRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEG  152 (170)
T ss_dssp             BSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC
T ss_pred             CCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcC
Confidence            4456777888999999999999999999999999999996    89999999999999998886543

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=99.21  E-value=3.5e-12  Score=106.55  Aligned_cols=63  Identities=57%  Similarity=0.831  Sum_probs=56.4

Q ss_pred             CcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        135 GNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       135 ~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +..+++|...+.|+.+|+|+||+.++++++|||||++.+.    ++|++||+|+++++++++|...+
T Consensus        87 ~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~  153 (172)
T d2igva1          87 GEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNG  153 (172)
T ss_dssp             BSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC
T ss_pred             CCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCC
Confidence            5567888888899999999999999999999999999987    89999999999999998885543

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.1e-12  Score=104.57  Aligned_cols=61  Identities=56%  Similarity=0.793  Sum_probs=53.9

Q ss_pred             cccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeec
Q psy13279        136 NKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQG  196 (287)
Q Consensus       136 ~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~Qg  196 (287)
                      ...+.+....+|+.+|+|+||+.++++++|||||++.+.    ++|++||+|.++++++++|...
T Consensus        79 ~~~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~  143 (161)
T d2r99a1          79 KKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQ  143 (161)
T ss_dssp             SCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTT
T ss_pred             ccccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHcc
Confidence            345667778899999999999999999999999999987    8999999999999999877543

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.3e-12  Score=103.42  Aligned_cols=63  Identities=51%  Similarity=0.797  Sum_probs=55.1

Q ss_pred             cccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeeccc
Q psy13279        136 NKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGGD  198 (287)
Q Consensus       136 ~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgGd  198 (287)
                      ..++++...+.|+.+|+||||+.++++++|||||++.+.    ++|++||+|+.+++++++|...++
T Consensus        80 ~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~  146 (164)
T d2z6wa1          80 SRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS  146 (164)
T ss_dssp             SCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC
T ss_pred             CcCCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCC
Confidence            345666777888889999999999999999999999986    899999999999999988877654

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=99.16  E-value=7e-12  Score=105.64  Aligned_cols=63  Identities=44%  Similarity=0.596  Sum_probs=56.2

Q ss_pred             CcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        135 GNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       135 ~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +..+++++..+.|+.+|+|+||+.++++++|||||++.+.    ++|++||+|+++++++++|...+
T Consensus        84 ~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~  150 (182)
T d2rmca_          84 GETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQA  150 (182)
T ss_dssp             BSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCC
Confidence            5567778888899999999999999999999999999986    89999999999999998776544

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=99.12  E-value=1.5e-11  Score=103.55  Aligned_cols=63  Identities=44%  Similarity=0.636  Sum_probs=55.7

Q ss_pred             CcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        135 GNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       135 ~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +..+.++.....|+.+|+|+||+.++++++|||||++.+.    ++|++||+|+.+++++++|.+..
T Consensus        83 ~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~  149 (182)
T d1h0pa_          83 GEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTE  149 (182)
T ss_dssp             BSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcC
Confidence            4556677778889999999999999999999999999987    89999999999999998777654

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.11  E-value=1.7e-11  Score=104.32  Aligned_cols=61  Identities=46%  Similarity=0.619  Sum_probs=54.9

Q ss_pred             CcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeee
Q psy13279        135 GNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQ  195 (287)
Q Consensus       135 ~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~Q  195 (287)
                      +..+++|+..++|+.+|+|+|++.++++++|||||+|.+.    ++|++||+|+++++++++|..
T Consensus        99 ~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~  163 (195)
T d1ihga2          99 GEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILEN  163 (195)
T ss_dssp             BSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHT
T ss_pred             CCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHc
Confidence            4567778888999999999999999999999999999986    899999999999999987754

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=99.10  E-value=1.9e-11  Score=101.80  Aligned_cols=62  Identities=42%  Similarity=0.623  Sum_probs=54.1

Q ss_pred             cccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        136 NKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       136 ~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      .++.++....+|+++|+|+||+.++++++|||||++.+.    ++|++||+|+++++++++|...+
T Consensus        89 ~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~  154 (173)
T d1qoia_          89 GPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVP  154 (173)
T ss_dssp             SCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCC
Confidence            345666777888889999999999999999999999886    89999999999999998776644

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=99.09  E-value=3.3e-12  Score=106.64  Aligned_cols=63  Identities=44%  Similarity=0.624  Sum_probs=40.7

Q ss_pred             cccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEE--EEeeeeeeeeeccc
Q psy13279        136 NKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYY--IFLTRFTQMCQGGD  198 (287)
Q Consensus       136 ~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~--~g~~vi~~m~QgGd  198 (287)
                      ..+.++...++|+++|+||||+.++++++|||||++.+.    ++|++||+|+  .+++++++|...+.
T Consensus        84 ~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t  152 (171)
T d2c3ba1          84 DKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGS  152 (171)
T ss_dssp             --------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCC
T ss_pred             CccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCC
Confidence            345566778999999999999999999999999999986    8999999998  58999988866554

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.04  E-value=4.7e-11  Score=98.90  Aligned_cols=59  Identities=34%  Similarity=0.472  Sum_probs=49.1

Q ss_pred             cccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        138 FEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       138 ~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      .+.+. ...|+.+|+|+||+.++++++|||||++.+.    ++|++||+|+.+++++++|.+..
T Consensus        85 ~~~~~-~~~~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~  147 (166)
T d1xo7a_          85 FDDEN-LKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTK  147 (166)
T ss_dssp             BCCCC-CCSCCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             ccccc-ccccccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCC
Confidence            33444 3455569999999999999999999999986    89999999999999998776543

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=99.03  E-value=5.7e-11  Score=98.99  Aligned_cols=61  Identities=46%  Similarity=0.570  Sum_probs=53.6

Q ss_pred             ccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        137 KFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       137 ~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      ...++...++|+++|+|+|++.++++++|||||++.+.    ++|++||+|.++++++++|...+
T Consensus        90 ~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~  154 (174)
T d1a33a_          90 MFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLK  154 (174)
T ss_dssp             CBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             cccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCC
Confidence            34556778899999999999999999999999999987    89999999999999998775543

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=98.98  E-value=7.7e-11  Score=97.98  Aligned_cols=61  Identities=44%  Similarity=0.644  Sum_probs=52.8

Q ss_pred             cccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeec
Q psy13279        136 NKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQG  196 (287)
Q Consensus       136 ~~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~Qg  196 (287)
                      ..++.| ...++|.++|+|+|++.+|++++|||||++++.    +++++||+|..+++++++|.+.
T Consensus        85 ~~~~~e~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~  150 (169)
T d2b71a1          85 EYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASV  150 (169)
T ss_dssp             SCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTS
T ss_pred             cccccccccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhC
Confidence            345555 346889999999999999999999999999987    8999999999999999888664

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=98.98  E-value=8.7e-11  Score=99.12  Aligned_cols=62  Identities=45%  Similarity=0.648  Sum_probs=53.8

Q ss_pred             CcccccCcccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEE--eeeeeeeeec
Q psy13279        135 GNKFEDENFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIF--LTRFTQMCQG  196 (287)
Q Consensus       135 ~~~~~~e~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g--~~vi~~m~Qg  196 (287)
                      +..++++...++|+++|+++|++.++++++|||||++.+.    ++|++||+|+.+  ++++++|...
T Consensus        98 ~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~  165 (186)
T d1z81a1          98 GEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENV  165 (186)
T ss_dssp             BSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHS
T ss_pred             CCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhcc
Confidence            3456677888999999999999999999999999999987    899999999988  8888777543

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.4e-10  Score=92.99  Aligned_cols=62  Identities=44%  Similarity=0.516  Sum_probs=53.4

Q ss_pred             CcccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeec
Q psy13279        135 GNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQG  196 (287)
Q Consensus       135 ~~~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~Qg  196 (287)
                      +...+.| +..++|+++|+||||+.++++++|||||++.+.    ++|++||++.++++++++|.+.
T Consensus        68 ~~~~~~e~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~  134 (159)
T d2ok3a1          68 GKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL  134 (159)
T ss_dssp             SSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTC
T ss_pred             CCccccccccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcC
Confidence            4455666 446889999999999999999999999999986    8999999999999999777654

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.5e-10  Score=93.49  Aligned_cols=63  Identities=44%  Similarity=0.549  Sum_probs=54.8

Q ss_pred             CcccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        135 GNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       135 ~~~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +.++++| +..++|+++|+|+||++++++++|||||++.+.    +++++||+|..+++++++|.+.+
T Consensus        68 ~~~~~~E~~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~  135 (178)
T d1zkca1          68 GKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVE  135 (178)
T ss_dssp             BSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSC
T ss_pred             CCCcCCccccccCCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCC
Confidence            4566777 446889999999999999999999999999986    89999999999999998887643

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=8.9e-10  Score=91.02  Aligned_cols=59  Identities=15%  Similarity=0.086  Sum_probs=48.9

Q ss_pred             cccCcccccccCCCceeccccC-CCCCCCceeEEeeec---------cceeeeEEEEEEeeeeeeeeec
Q psy13279        138 FEDENFVLKHTGPGVLSMANSG-PNTNGSQFFLCTTSI---------NKHYYYYYYYIFLTRFTQMCQG  196 (287)
Q Consensus       138 ~~~e~~~~~h~~~G~l~ma~~~-~~s~~SqFfI~l~~~---------g~~~vfG~v~~g~~vi~~m~Qg  196 (287)
                      +++|....+|+++|+|+|++.. +++++|||||++.+.         .+|++||+|.++++++++|.+.
T Consensus        73 ~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~  141 (166)
T d1v9ta_          73 IKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQV  141 (166)
T ss_dssp             BCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTS
T ss_pred             ccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhC
Confidence            5667666666679999999855 999999999999875         3689999999999999877654

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.3e-09  Score=89.70  Aligned_cols=55  Identities=36%  Similarity=0.471  Sum_probs=49.7

Q ss_pred             cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeec
Q psy13279        142 NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQG  196 (287)
Q Consensus       142 ~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~Qg  196 (287)
                      ...+.|+++|+|+|++.++++++|||||++++.    ++|++||+|.++++++++|.+.
T Consensus        85 ~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~  143 (164)
T d2a2na1          85 HSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV  143 (164)
T ss_dssp             CTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTS
T ss_pred             ccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcC
Confidence            557888999999999999999999999999996    8999999999999999877654

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=1.7e-09  Score=89.15  Aligned_cols=59  Identities=15%  Similarity=0.117  Sum_probs=47.6

Q ss_pred             cccCcccccccCCCceeccccC-CCCCCCceeEEeeec------------cceeeeEEEEEEeeeeeeeeec
Q psy13279        138 FEDENFVLKHTGPGVLSMANSG-PNTNGSQFFLCTTSI------------NKHYYYYYYYIFLTRFTQMCQG  196 (287)
Q Consensus       138 ~~~e~~~~~h~~~G~l~ma~~~-~~s~~SqFfI~l~~~------------g~~~vfG~v~~g~~vi~~m~Qg  196 (287)
                      +++|.....++.+|.|+|+++. +++++|||||++.+.            ++|++||++..+++++++|.+.
T Consensus        68 ~~~e~~~~~~h~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~  139 (164)
T d1lopa_          68 IKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGV  139 (164)
T ss_dssp             BCCCCCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTS
T ss_pred             ccccccccccceeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhC
Confidence            4566544555569999999864 999999999999754            5799999999999999777554

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=7.5e-10  Score=91.58  Aligned_cols=63  Identities=40%  Similarity=0.572  Sum_probs=54.2

Q ss_pred             CcccccC-cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        135 GNKFEDE-NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       135 ~~~~~~e-~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +..++.| +..+.|+++|+|+|+++++++++|||||++.+.    ++|++||+|+++++++++|.+..
T Consensus        79 ~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~  146 (166)
T d1xwna1          79 GKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVE  146 (166)
T ss_dssp             CSCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSC
T ss_pred             CCccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCC
Confidence            3445666 457888999999999999999999999999987    89999999999999998886643

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.68  E-value=3.3e-09  Score=86.46  Aligned_cols=63  Identities=43%  Similarity=0.530  Sum_probs=54.0

Q ss_pred             CcccccCcc-cccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEEEeeeeeeeeecc
Q psy13279        135 GNKFEDENF-VLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYIFLTRFTQMCQGG  197 (287)
Q Consensus       135 ~~~~~~e~~-~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~g~~vi~~m~QgG  197 (287)
                      +..+++|.. .+.|.++|+++|++.++++++|||||++.+.    ++|++||+|+++++++++|.+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~  136 (155)
T d2fu0a1          69 GNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVR  136 (155)
T ss_dssp             SSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CCccccccccccccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCC
Confidence            556677754 5788888899999999999999999999986    89999999999999998887654

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=1.3e-08  Score=84.03  Aligned_cols=56  Identities=29%  Similarity=0.387  Sum_probs=49.7

Q ss_pred             cccccccCCCceeccccCCCCCCCceeEEeeec----cceeeeEEEEE--Eeeeeeeeeecc
Q psy13279        142 NFVLKHTGPGVLSMANSGPNTNGSQFFLCTTSI----NKHYYYYYYYI--FLTRFTQMCQGG  197 (287)
Q Consensus       142 ~~~~~h~~~G~l~ma~~~~~s~~SqFfI~l~~~----g~~~vfG~v~~--g~~vi~~m~QgG  197 (287)
                      ...++|+++|+|+|++.++++++|||||++.+.    ++|++||+|+.  +++++++|.+.+
T Consensus        91 ~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~  152 (171)
T d1w74a_          91 HPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTA  152 (171)
T ss_dssp             CTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSC
T ss_pred             CCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCC
Confidence            456789999999999999999999999999997    89999999994  889988776653