Psyllid ID: psy13311

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870---
MVVACCRFLCYFCRTSRQNQKAMFDHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALALSRLLLVGMIRDEDVEKLLMMINPETWDPTFEKDGKDEHRKGLLHMKMAEGAKLQMCYLLHHLCDIQLRHRVESIIAFSHDFVGDLQTDQLRRYIEIKQSDLPSAVAAKKTREFRCPPREQFQNLDRKTLKIARVVRDLRERMDHFHESLMKQVSLLALQEPERRVKSIIYLGSDQFPCELSDIGLLVRQYDSVGELIRALEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLGRRAQAQSDAPQTGTGQEGEPQSKHKENGEEPEKPGVFKKFYNFVNAVKELEEDPKVEPEPEKKTPEVLSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAIIEANKMSDRIAARRSIIPIDDGVTDFDHPLPESEDDEDYIDTGAAILNFYCTLVDLLGRCAPDSTVIAQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEESGGSVHPQLVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNESLRARAILRSLVPLEDLQGVLSLRFSIACPGPGEEKAKSDMPSGLIPGHKQSVVLFLERVYGIETQDLFFRILEEAFLPDLRTATMLDRSDGSESDMALAMNRYIGNSVLPLLISHAKFYNDADNYANLLDATLHTVYRLSKNRMLTKGQPGLGDRRRVAGKDLANKVTYNISYTSE
ccccccccHHHHHccccHHHHHccccccEEEEcccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHcccccHHHHHHccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHccHHHccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHccEEEEccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEcccHHHHHHHccHHHHHHHHHHHHccccccEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHccccccccccccHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHccccccHHHHHcccccccccccccHHHHHHHHHEEEEccccHHHHHHHHHHHHHcccHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEcHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccHHHHHHcHHHHHHHHHHHHHccccEcccHHccccHHHHHHHHHHHcccHHHccEEEEEccccccccccccccccccccccccccccHHEEEHHHccccccHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHcccccccccHHHccHHHHcccEEEEEcccc
MVVACCRFLCYFCRTSRQNQKAMFDHLSFLLENSnillsrpslrgstpldvAYSSVMENTELALALSRLLLVGMIRDEDVEKLLMMInpetwdptfekdgkdehrKGLLHMKMAEGAKLQMCYLLHHLCDIQLRHRVESIIAFSHDFVGDLQTDQLRRYIEIkqsdlpsavaakktrefrcppreqfqnldRKTLKIARVVRDLRERMDHFHESLMKQVSLLALQEPERRVKSIIYLgsdqfpcelsdigllvRQYDSVGELIRALEKTYVInnktkddvSQMWVGLSQIRSLLPVQMSQEEEELMRERLWKLVnnhtffqhpdLIRILRVHENVMAVMMNTLGRraqaqsdapqtgtgqegepqskhkengeepekpgvfKKFYNFVNAVKeleedpkvepepekktpevlsrpslrgstpldvAYSSVMENTELALALREHYLEKIAIYLSRcglqsnselvekgypdlgwdpvegeRYLDFLRFCVWVNGESVEENANLVIRLLIrrpeclgpalrgEGEGLLQAIIEANKMSDRIAarrsiipiddgvtdfdhplpeseddedyiDTGAAILNFYCTLVDLlgrcapdstviaqdmgsgpgnyhpnpidmtnLTLSREMQNMAERLAENSHDIWAkkkkeesggsvhpqlvpydlltdkekKKDRERSQEFLKYLQYQGYKLRSIARRGKNESLRARAILRSLVPLEDLQGVLSLRfsiacpgpgeekaksdmpsglipghkqSVVLFLERVYGIETQDLFFRILEEaflpdlrtatmldrsdgsesDMALAMNRYIGNSVLPLLISHAKFYNDADNYANLLDATLHTVYRLsknrmltkgqpglgdrrrvaGKDLANKVTYNISYTSE
MVVACCRFLCYFCRTSRQNQKAMFDHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALALSRLLLVGMIRDEDVEKLLMMINpetwdptfekdGKDEHRKGLLHMKMAEGAKLQMCYLLHHLCDIQLRHRVESIIAFSHDFVGDLQTDQLRRYIEIkqsdlpsavaakktrefrcppreqfqnldrktlkIARVVRDLRERMDHFHESLMKQVSLLALQEPERRVKSIIYLGSDQFPCELSDIGLLVRQYDSVGELIRALEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLGRRAQAQSDAPqtgtgqegepqskhkengeepekpgvFKKFYNFVNAVKEleedpkvepepekktpevlsrpslrgstPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAIIEANKMSDRIAARRsiipiddgvtdfDHPLPESEDDEDYIDTGAAILNFYCTLVDLLGRCAPDSTVIAQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKkkeesggsvhpqlvpydlltdkekkkDRERSQEFLkylqyqgyklrsiarrgkNESLRARAILRSLVPLEDLQGVLSLRFSIACPGPGEEKAKSDMPSGLIPGHKQSVVLFLERVYGIETQDLFFRILEEAFLPDLRTATMLDRSDGSESDMALAMNRYIGNSVLPLLISHAKFYNDADNYANLLDATLHTVYRlsknrmltkgqpglgdrrrvagkdlankvtynisytse
MVVACCRFLCYFCRTSRQNQKAMFDHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTElalalsrlllVGMIRDEDVEKLLMMINPETWDPTFEKDGKDEHRKGLLHMKMAEGAKLQMCYLLHHLCDIQLRHRVESIIAFSHDFVGDLQTDQLRRYIEIKQSDLPSAVAAKKTREFRCPPREQFQNLDRKTLKIARVVRDLRERMDHFHESLMKQVSLLALQEPERRVKSIIYLGSDQFPCELSDIGLLVRQYDSVGELIRALEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLGRRAQAQSDAPQTGTGQEGEPQSKHKENGEEPEKPGVFKKFYNFVNAvkeleedpkvepepekktpevLSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAIIEANKMSDRIAARRSIIPIDDGVTDFDHPLPESEDDEDYIDTGAAILNFYCTLVDLLGRCAPDSTVIAQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEESGGSVHPQLVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNESLRARAILRSLVPLEDLQGVLSLRFSIACPGPGEEKAKSDMPSGLIPGHKQSVVLFLERVYGIETQDLFFRILEEAFLPDLRTATMLDRSDGSESDMALAMNRYIGNSVLPLLISHAKFYNDADNYANLLDATLHTVYRLSKNRMLTKGQPGLGDRRRVAGKDLANKVTYNISYTSE
*VVACCRFLCYFCRTSRQNQKAMFDHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALALSRLLLVGMIRDEDVEKLLMMINPETWDPTF**********GLLHMKMAEGAKLQMCYLLHHLCDIQLRHRVESIIAFSHDFVGDLQTDQLRRYIEIKQ************************NLDRKTLKIARVVRDLRERMDHFHESLMKQVSLLALQEPERRVKSIIYLGSDQFPCELSDIGLLVRQYDSVGELIRALEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQ*******LMRERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTL************************************VFKKFYNFVNAV*********************************VAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAIIEANKMSDRIAARRSIIPIDDGVTDFD**********DYIDTGAAILNFYCTLVDLLGRCAPDSTVIA*****************************************************************************FLKYLQYQGYKLRSIARRGKNESLRARAILRSLVPLEDLQGVLSLRFSIAC******************GHKQSVVLFLERVYGIETQDLFFRILEEAFLPDLRTATML**********ALAMNRYIGNSVLPLLISHAKFYNDADNYANLLDATLHTVYRLSKNRML********************KVTY*******
MVVACCRFLCYFCRTSRQNQKAMFDHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALALSRLLLVGMIRDEDVEKLLMMINPE******************LHMKMAEGAKLQMCYLLHHLCDIQLRHRVESIIAFSHDFVGDLQTDQLRRYIEIKQSDLPSAVAAKKTREFRCPPREQFQNLDRKTLKIARVVRDLRERMDHFHESLMKQV**************IIYLGSDQFPCELSDIGLLVRQYDSVGELIRALEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLG******************************PEKPGVFKKFYNFVNAVKEL*****VE*EPEKKTPEVLSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAI****************************************DTGAAILNFYCTLVDLLGRC********************NPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEESGGSVHPQLVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKL*****************************VLSLRF*******************LIPGHKQSVVLFLERVYGIETQDLFFRILEEAFLPDLRTATMLDRSDGSESDMALAMNRYIGNSVLPLLISHAKFYNDADNYANLLDATLHTVYRLSKNR***********RRRVAGKDLANKVTYNISYT**
MVVACCRFLCYFCRTSRQNQKAMFDHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALALSRLLLVGMIRDEDVEKLLMMINPETWDPTFEKDGKDEHRKGLLHMKMAEGAKLQMCYLLHHLCDIQLRHRVESIIAFSHDFVGDLQTDQLRRYIEIKQSDLPSAVAAKKTREFRCPPREQFQNLDRKTLKIARVVRDLRERMDHFHESLMKQVSLLALQEPERRVKSIIYLGSDQFPCELSDIGLLVRQYDSVGELIRALEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLGR******************************EKPGVFKKFYNFVNAVKELE*********************LRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAIIEANKMSDRIAARRSIIPIDDGVTDFDHPLPESEDDEDYIDTGAAILNFYCTLVDLLGRCAPDSTVIAQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKK********VHPQLVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNESLRARAILRSLVPLEDLQGVLSLRFSIACPG***********SGLIPGHKQSVVLFLERVYGIETQDLFFRILEEAFLPDLRTATMLDRSDGSESDMALAMNRYIGNSVLPLLISHAKFYNDADNYANLLDATLHTVYRLSKNRMLTKGQPGLGDRRRVAGKDLANKVTYNISYTSE
*VVACCRFLCYFCRTSRQNQKAMFDHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALALSRLLLVGMIRDEDVEKLLMMINPETWDPTFE*DGK***RKGLLHMKMAEGAKLQMCYLLHHLCDIQLRHRVESIIAFSHDFVGDLQTDQLRRYIEIKQSDLPSAVAAKKTREFRCPPREQFQNLDRKTLKIARVVRDLRERMDHFHESLMKQVSLLALQEPERRVKSIIYLGSDQFPCELSDIGLLVRQYDSVGELIRALEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLGRRAQAQSDAPQT***************GEEPEKPGVFKKFYNFVNAVKELEEDPKVEPEPEKKTPEVLSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAIIEANKMSDR***************************EDYIDTGAAILNFYCTLVDLLGRCAPDSTVIAQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEESGGSVHPQLVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNESLRARAILRSLVPLEDLQGVLSLRFSIACPGPGEEKAKSDMPSGLIPGHKQSVVLFLERVYGIETQDLFFRILEEAFLPDLRTATMLDRSDGSESDMALAMNRYIGNSVLPLLISHAKFYNDADNYANLLDATLHTVYRLSKNRMLTKGQPGLGDRRRVAGKDLANKVTYNISYT**
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MVVACCRFLCYFCRTSRQNQKAMFDHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALALSRLLLVGMIRDEDVEKLLMMINPETWDPTFEKDGKDEHRKGLLHMKMAEGAKLQMCYLLHHLCDIQLRHRVESIIAFSHDFVGDLQTDQLRRYIEIKQSDLPSAVAAKKTREFRCPPREQFQNLDRKTLKIARVVRDLRERMDHFHESLMKQVSLLALQEPERRVKSIIYLGSDQFPCELSDIGLLVRQYDSVGELIRALEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLGRRAQAQSDAPQTGTGQEGEPQSKHKENGEEPEKPGVFKKFYNFVNAVKELEEDPKVEPEPEKKTPEVLSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAIIEANKMSDRIAARRSIIPIDDGVTDFDHPLPESEDDEDYIDTGAAILNFYCTLVDLLGRCAPDSTVIAQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEESGGSVHPQLVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNESLRARAILRSLVPLEDLQGVLSLRFSIACPGPGEEKAKSDMPSGLIPGHKQSVVLFLERVYGIETQDLFFRILEEAFLPDLRTATMLDRSDGSESDMALAMNRYIGNSVLPLLISHAKFYNDADNYANLLDATLHTVYRLSKNRMLTKGQPGLGDRRRVAGKDLANKVTYNISYTSE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query873 2.2.26 [Sep-21-2011]
Q24498 5127 Ryanodine receptor 44F OS yes N/A 0.380 0.064 0.705 1e-146
E9Q401 4966 Ryanodine receptor 2 OS=M yes N/A 0.563 0.099 0.397 1e-102
P30957 4969 Ryanodine receptor 2 OS=O yes N/A 0.563 0.099 0.394 1e-102
Q92736 4967 Ryanodine receptor 2 OS=H yes N/A 0.563 0.099 0.394 1e-102
B0LPN4 4953 Ryanodine receptor 2 OS=R yes N/A 0.561 0.098 0.396 1e-100
Q15413 4870 Ryanodine receptor 3 OS=H no N/A 0.575 0.103 0.371 2e-98
Q9TS33 4872 Ryanodine receptor 3 OS=O no N/A 0.580 0.104 0.370 1e-93
F1LMY4 5035 Ryanodine receptor 1 OS=R no N/A 0.575 0.099 0.361 2e-88
P21817 5038 Ryanodine receptor 1 OS=H no N/A 0.523 0.090 0.381 1e-84
P16960 5035 Ryanodine receptor 1 OS=S no N/A 0.523 0.090 0.374 3e-83
>sp|Q24498|RY44_DROME Ryanodine receptor 44F OS=Drosophila melanogaster GN=Rya-r44F PE=1 SV=3 Back     alignment and function desciption
 Score =  519 bits (1336), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/370 (70%), Positives = 290/370 (78%), Gaps = 38/370 (10%)

Query: 249  IGLLVRQYDSVGELIRALEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRE 308
              LL+RQYD+VGEL+RALEKTYVIN + +DDV++MWVGLSQIR+LLPVQMSQEEEELMR+
Sbjct: 2188 FSLLLRQYDTVGELVRALEKTYVINTRARDDVAEMWVGLSQIRALLPVQMSQEEEELMRK 2247

Query: 309  RLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLGRRAQAQSDAPQTGTGQEGEPQSKH 368
            RLWKLVNN TFFQHPDLIRILRVHENVMAVMMNTLGRRAQAQSDAP      EG P SK 
Sbjct: 2248 RLWKLVNNATFFQHPDLIRILRVHENVMAVMMNTLGRRAQAQSDAPTQSEVAEGAP-SKE 2306

Query: 369  KENGEE-----------------PEKPGVFKKFYNFVNAVKELEEDPKVEPEPEKKTPEV 411
            K+   E                   +  +F  F   ++    L                 
Sbjct: 2307 KDTSHEMVVACCRFLCYFCRTGRQNQKAMFDHFDFLLDNANIL----------------- 2349

Query: 412  LSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDL 471
            L+RPSLRGSTPLDVAYSS+MENTELALALREHYLEKIA+YLSRCGLQSNSELVEKGYPDL
Sbjct: 2350 LARPSLRGSTPLDVAYSSLMENTELALALREHYLEKIAVYLSRCGLQSNSELVEKGYPDL 2409

Query: 472  GWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAIIE 531
            GWDPVEGERYLDFLR+CVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGL +AI+E
Sbjct: 2410 GWDPVEGERYLDFLRYCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLFRAIVE 2469

Query: 532  ANKMSDRIAARRSIIPIDDGVT---DFDHPLPESEDDEDYIDTGAAILNFYCTLVDLLGR 588
            AN+MS+RI+ R  +    +G     +F HPLPE E+DEDYIDTGAAILNFYCTLVDLLGR
Sbjct: 2470 ANRMSERISDRCKMQDEAEGTIAGLNFTHPLPEGEEDEDYIDTGAAILNFYCTLVDLLGR 2529

Query: 589  CAPDSTVIAQ 598
            CAPD++VI Q
Sbjct: 2530 CAPDASVIEQ 2539
Intracellular calcium channel that is required for proper muscle function during embryonic development and may be essential for excitation-contraction coupling in larval body wall muscles.
Drosophila melanogaster (taxid: 7227)
>sp|E9Q401|RYR2_MOUSE Ryanodine receptor 2 OS=Mus musculus GN=Ryr2 PE=1 SV=1 Back     alignment and function description
>sp|P30957|RYR2_RABIT Ryanodine receptor 2 OS=Oryctolagus cuniculus GN=RYR2 PE=1 SV=3 Back     alignment and function description
>sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens GN=RYR2 PE=1 SV=3 Back     alignment and function description
>sp|B0LPN4|RYR2_RAT Ryanodine receptor 2 OS=Rattus norvegicus GN=Ryr2 PE=1 SV=2 Back     alignment and function description
>sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3 Back     alignment and function description
>sp|Q9TS33|RYR3_RABIT Ryanodine receptor 3 OS=Oryctolagus cuniculus PE=1 SV=1 Back     alignment and function description
>sp|F1LMY4|RYR1_RAT Ryanodine receptor 1 OS=Rattus norvegicus GN=Ryr1 PE=2 SV=1 Back     alignment and function description
>sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3 Back     alignment and function description
>sp|P16960|RYR1_PIG Ryanodine receptor 1 OS=Sus scrofa GN=RYR1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query873
357622151 5019 hypothetical protein KGM_07526 [Danaus p 0.586 0.102 0.654 0.0
378747458 5118 ryanodien receptor [Spodoptera exigua] 0.587 0.100 0.666 0.0
395760124 5128 ryanodine receptor [Chilo suppressalis] 0.602 0.102 0.664 0.0
389568469 5133 ryanodine receptor [Chilo suppressalis] 0.602 0.102 0.664 0.0
385843220 5087 ryanodine receptor [Cnaphalocrocis medin 0.585 0.100 0.662 0.0
356470637 5164 ryanodine receptor [Plutella xylostella] 0.589 0.099 0.634 0.0
354463161 5073 ryanodine receptor 2 [Plutella xylostell 0.587 0.101 0.647 0.0
354463159 5117 ryanodine receptor 1 [Plutella xylostell 0.587 0.100 0.647 0.0
414068101 5118 RyR [Plutella xylostella] 0.587 0.100 0.647 0.0
389568465 5131 ryanodine receptor [Plutella xylostella] 0.589 0.100 0.633 0.0
>gi|357622151|gb|EHJ73734.1| hypothetical protein KGM_07526 [Danaus plexippus] Back     alignment and taxonomy information
 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/608 (65%), Positives = 452/608 (74%), Gaps = 96/608 (15%)

Query: 66   LSRLLLVGMIRDEDVEKLLMMINPETWDPTFEKDGKDEHRKGLLHMKMAEGAKLQMCYLL 125
            + RLLLVGM+RDEDVEKLL+MINPETWDPTF+K+GKDEHRKGLLHMKMAEGAKLQMCYLL
Sbjct: 2065 VDRLLLVGMMRDEDVEKLLIMINPETWDPTFDKEGKDEHRKGLLHMKMAEGAKLQMCYLL 2124

Query: 126  HHLCDIQLRHRVESIIAFSHDFVGDLQTDQLRRYIEIKQSDLPSAVAAKKTREFRCPPRE 185
             HL DIQLRHRVESIIAF+HDFVGDLQTDQLRRY EIKQSDLPSAVAAKKTREFRCPPRE
Sbjct: 2125 QHLNDIQLRHRVESIIAFAHDFVGDLQTDQLRRYTEIKQSDLPSAVAAKKTREFRCPPRE 2184

Query: 186  Q------FQNLDRKTLKIARVVRDLRERMDHFHESLMKQVSL------------------ 221
            Q      F++++    +      +L  RM+ FHESLM  VSL                  
Sbjct: 2185 QMNAILSFKHMEDDDPENCPCGEELITRMNEFHESLMTHVSLNALQEPDGDEASEPQTKP 2244

Query: 222  --------------------LALQEPERR----------VKSIIYLGSD---QFPCELSD 248
                                 A++EP ++          +++I+    +   + P  + +
Sbjct: 2245 GAFGKLYNIINTVKELEEEQKAIEEPPKKSPEEKFRKVLIQTIVNWAEESQIETPKLVRE 2304

Query: 249  I-GLLVRQYDSVGELIRALEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMR 307
            +  LLVRQYD++GELIRALEKTYVIN KTK DV++MWVGLSQIR+LLPVQMSQEEEELMR
Sbjct: 2305 MFSLLVRQYDAIGELIRALEKTYVINAKTKLDVAEMWVGLSQIRALLPVQMSQEEEELMR 2364

Query: 308  ERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLGRRAQAQSDAPQTGTGQEGEPQSK 367
            +RLWKLVNNHTFFQHPDLIR+LRVHENVMAVMMNTLGRRAQAQSDAP    G    P+ K
Sbjct: 2365 KRLWKLVNNHTFFQHPDLIRVLRVHENVMAVMMNTLGRRAQAQSDAP---AGATPSPEDK 2421

Query: 368  HKENGEE-----------------PEKPGVFKKFYNFVNAVKELEEDPKVEPEPEKKTPE 410
             K+   E                   +  +F  F +F      L E+  +          
Sbjct: 2422 EKDTSHEMVVACCRFLCYFCRTGRQNQKAMFDHF-DF------LLENSNI---------- 2464

Query: 411  VLSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPD 470
            +LSRPSLRGSTPLDVAYSS+MENTELALALREHYLEKIA+YLSRCGLQSNSEL+EKGYPD
Sbjct: 2465 LLSRPSLRGSTPLDVAYSSLMENTELALALREHYLEKIAVYLSRCGLQSNSELIEKGYPD 2524

Query: 471  LGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAII 530
            LGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLL+AI+
Sbjct: 2525 LGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLKAIV 2584

Query: 531  EANKMSDRIAARRSIIPIDDGV-TDFDHPLPESEDDEDYIDTGAAILNFYCTLVDLLGRC 589
            +ANKMS+RIA RR +  +++G    F HPLP+SEDDEDYIDTGAAILNFYCTLVDLLGRC
Sbjct: 2585 DANKMSERIADRRKLREMEEGGDISFSHPLPQSEDDEDYIDTGAAILNFYCTLVDLLGRC 2644

Query: 590  APDSTVIA 597
            APD+ VIA
Sbjct: 2645 APDAAVIA 2652

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|378747458|gb|AFC36359.1| ryanodien receptor [Spodoptera exigua] Back     alignment and taxonomy information
>gi|395760124|gb|AFN70719.1| ryanodine receptor [Chilo suppressalis] Back     alignment and taxonomy information
>gi|389568469|gb|AFK84958.1| ryanodine receptor [Chilo suppressalis] Back     alignment and taxonomy information
>gi|385843220|gb|AFI80904.1| ryanodine receptor [Cnaphalocrocis medinalis] Back     alignment and taxonomy information
>gi|356470637|gb|AET09964.1| ryanodine receptor [Plutella xylostella] Back     alignment and taxonomy information
>gi|354463161|gb|AER25355.1| ryanodine receptor 2 [Plutella xylostella] Back     alignment and taxonomy information
>gi|354463159|gb|AER25354.1| ryanodine receptor 1 [Plutella xylostella] Back     alignment and taxonomy information
>gi|414068101|gb|AFW97408.1| RyR [Plutella xylostella] Back     alignment and taxonomy information
>gi|389568465|gb|AFK84956.1| ryanodine receptor [Plutella xylostella] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query873
FB|FBgn0011286 5127 Rya-r44F "Ryanodine receptor 4 0.507 0.086 0.599 1.6e-199
WB|WBGene00006801 5387 unc-68 [Caenorhabditis elegans 0.391 0.063 0.5 9.7e-154
UNIPROTKB|F1NLZ9 4955 RYR2 "Uncharacterized protein" 0.211 0.037 0.596 1.3e-125
MGI|MGI:99685 4966 Ryr2 "ryanodine receptor 2, ca 0.211 0.037 0.602 1.8e-125
UNIPROTKB|J9P3Y7 4957 RYR2 "Uncharacterized protein" 0.211 0.037 0.591 4.9e-125
UNIPROTKB|F1PEE8 4960 RYR2 "Uncharacterized protein" 0.211 0.037 0.591 4.9e-125
UNIPROTKB|H0YGL9 4951 RYR2 "Ryanodine receptor 2" [H 0.211 0.037 0.596 8e-125
UNIPROTKB|Q92736 4967 RYR2 "Ryanodine receptor 2" [H 0.211 0.037 0.596 8.1e-125
UNIPROTKB|H7BY35 4973 RYR2 "Ryanodine receptor 2" [H 0.211 0.037 0.596 8.1e-125
UNIPROTKB|F1LS89 4937 Ryr2 "Ryanodine receptor 2" [R 0.211 0.037 0.591 1.5e-124
FB|FBgn0011286 Rya-r44F "Ryanodine receptor 44F" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1296 (461.3 bits), Expect = 1.6e-199, Sum P(3) = 1.6e-199
 Identities = 272/454 (59%), Positives = 318/454 (70%)

Query:   148 VGDLQTDQLRRYIEIKQSDLPSAVAAKKTREFRCPPREQFQNLDRKTLKIARVVRDLRER 207
             +GD   D L + + +     P  V      E +  P  +  N      ++    +++ E 
Sbjct:  2094 LGDFH-DSLMQKVSLNALQEPDGVEGTAIEEVKTGPITKIYNFINTVKELEEGPKEVEEP 2152

Query:   208 MDHFHESLMKQVSLLALQEPERRVKSIIYLGSDQFPCELSDIGLLVRQYDSVGELIRALE 267
                  E + ++V +  +       +    + + +   E+    LL+RQYD+VGEL+RALE
Sbjct:  2153 EKKTPEEVFRKVLIKTIVSWAEESQ----IENPKLVREM--FSLLLRQYDTVGELVRALE 2206

Query:   268 KTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPDLIR 327
             KTYVIN + +DDV++MWVGLSQIR+LLPVQMSQEEEELMR+RLWKLVNN TFFQHPDLIR
Sbjct:  2207 KTYVINTRARDDVAEMWVGLSQIRALLPVQMSQEEEELMRKRLWKLVNNATFFQHPDLIR 2266

Query:   328 ILRVHENVMAVMMNTLGRRAQAQSDAPQTGTGQEGEPQSKHKENGEEPEKPGVFKKFYNF 387
             ILRVHENVMAVMMNTLGRRAQAQSDAP      EG P SK K+   E          Y  
Sbjct:  2267 ILRVHENVMAVMMNTLGRRAQAQSDAPTQSEVAEGAP-SKEKDTSHEMVVACCRFLCYFC 2325

Query:   388 VNAXXXXXXXXXXXXXXXXXXXXXLSRPSLRGSTPLDVAYSSVMENTELALALREHYLEK 447
                                     L+RPSLRGSTPLDVAYSS+MENTELALALREHYLEK
Sbjct:  2326 RTGRQNQKAMFDHFDFLLDNANILLARPSLRGSTPLDVAYSSLMENTELALALREHYLEK 2385

Query:   448 IAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLL 507
             IA+YLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLR+CVWVNGESVEENANLVIRLL
Sbjct:  2386 IAVYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRYCVWVNGESVEENANLVIRLL 2445

Query:   508 IRRPECLGPALRGEGEGLLQAIIEANKMSDRIAARRSIIPIDDGVT---DFDHPLPESED 564
             IRRPECLGPALRGEGEGL +AI+EAN+MS+RI+ R  +    +G     +F HPLPE E+
Sbjct:  2446 IRRPECLGPALRGEGEGLFRAIVEANRMSERISDRCKMQDEAEGTIAGLNFTHPLPEGEE 2505

Query:   565 DEDYIDTGAAILNFYCTLVDLLGRCAPDSTVIAQ 598
             DEDYIDTGAAILNFYCTLVDLLGRCAPD++VI Q
Sbjct:  2506 DEDYIDTGAAILNFYCTLVDLLGRCAPDASVIEQ 2539
GO:0006816 "calcium ion transport" evidence=TAS
GO:0005219 "ryanodine-sensitive calcium-release channel activity" evidence=ISS;NAS;TAS
GO:0016021 "integral to membrane" evidence=IEA;NAS
GO:0005789 "endoplasmic reticulum membrane" evidence=NAS
GO:0006936 "muscle contraction" evidence=IMP
GO:0070588 "calcium ion transmembrane transport" evidence=IEA
GO:0006874 "cellular calcium ion homeostasis" evidence=IEA
GO:0005509 "calcium ion binding" evidence=IEA
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0035206 "regulation of hemocyte proliferation" evidence=IMP
WB|WBGene00006801 unc-68 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLZ9 RYR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:99685 Ryr2 "ryanodine receptor 2, cardiac" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9P3Y7 RYR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEE8 RYR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|H0YGL9 RYR2 "Ryanodine receptor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q92736 RYR2 "Ryanodine receptor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H7BY35 RYR2 "Ryanodine receptor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LS89 Ryr2 "Ryanodine receptor 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query873
pfam01365203 pfam01365, RYDR_ITPR, RIH domain 7e-41
pfam0202695 pfam02026, RyR, RyR domain 2e-34
pfam01365203 pfam01365, RYDR_ITPR, RIH domain 2e-18
>gnl|CDD|216456 pfam01365, RYDR_ITPR, RIH domain Back     alignment and domain information 
 Score =  148 bits (376), Expect = 7e-41
 Identities = 45/231 (19%), Positives = 75/231 (32%), Gaps = 28/231 (12%)

Query: 285 VGLSQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLG 344
             L  +  L+      EEE    +   K  N     Q   L+R   VH+ V+ ++ N   
Sbjct: 1   EVLKLLEDLIKFCAQPEEEG---QHELKQNNLKPLRQRQRLLREEGVHKVVLELLQNPYD 57

Query: 345 RRAQAQSDAPQTGTGQEGEPQSKHKENGEEPEKPGVFKKFYNFVNAVKELEEDPKVEPEP 404
            +A    D  +    ++ E                + +  Y F+          +     
Sbjct: 58  EKAGG--DFAEELGDEKDEKM------------KEIVRLCYRFLQY---FCRGNRQNQAL 100

Query: 405 EKKTPEVLSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELV 464
             K  +++   S  G   LD  Y+ +  N EL   + E  +E     L + G       V
Sbjct: 101 LAKHLDLMQLQSGPGILELDTLYAVLHNNPELLNEIIEAVIEHFVSLLEKHGRDPKYLDV 160

Query: 465 EKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLG 515
            K         V G +  D +   V   GE      +L+I+  +R   C G
Sbjct: 161 LKTLCVANGKAVRGTQ--DLICKEVLNPGE------DLLIQTNLRASVCSG 203

The RIH (RyR and IP3R Homology) domain is an extracellular domain from two types of calcium channels. This region is found in the ryanodine receptor and the inositol-1,4,5- trisphosphate receptor. This domain may form a binding site for IP3. Length = 203
>gnl|CDD|202095 pfam02026, RyR, RyR domain Back     alignment and domain information
>gnl|CDD|216456 pfam01365, RYDR_ITPR, RIH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 873
KOG2243|consensus 5019 100.0
KOG2243|consensus 5019 100.0
PF0202694 RyR: RyR domain; InterPro: IPR003032 This domain i 99.93
PF01365207 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi 99.62
PF01365207 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi 98.47
PF0202694 RyR: RyR domain; InterPro: IPR003032 This domain i 98.36
KOG3533|consensus 2706 97.86
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 82.97
>KOG2243|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.4e-240  Score=1990.70  Aligned_cols=711  Identities=44%  Similarity=0.729  Sum_probs=655.3

Q ss_pred             HHHHHhcccccc--cCCCCCCCCccccccccccCchHHHHHHHHHHHhhccCchhHHHHHHHhCCCCCCCCccCCCc---
Q psy13311         27 LSFLLENSNILL--SRPSLRGSTPLDVAYSSVMENTELALALSRLLLVGMIRDEDVEKLLMMINPETWDPTFEKDGK---  101 (873)
Q Consensus        27 ~~~Ll~~~~~~~--~~~s~~gstPlDVa~a~~~dn~pLlKL~d~LLv~Gv~~DeDl~kiL~LI~P~~f~~~~~~~g~---  101 (873)
                      ++.|-++-+-+.  ++++.+|+|...+        .||+||++|||+||+|+|+|+++||.||+|++|+++..++.+   
T Consensus      1802 i~mlteavk~~~~h~rdpvggs~ef~f--------vp~ikl~~tllimgif~~dd~k~il~lidpsvf~e~a~~~ee~dt 1873 (5019)
T KOG2243|consen 1802 IQMLTEAVKCGGAHARDPVGGSTEFLF--------VPLIKLFGTLLIMGIFDDDDLKHILLLIDPSVFGEAAAGEEEGDT 1873 (5019)
T ss_pred             HHHHHHHHHhccccccCCCCCeeEEee--------ehHHHHHHHHHheeeccchhHHHHHHhcChhhhccccCCccccch
Confidence            455555544443  7799999999999        899999999999999999999999999999999998653221   


Q ss_pred             -------------------------cccccCceeeccccchhhhHHHHHHHhhhhhhhhhhhhhhhchhhhhhhhhhHHH
Q psy13311        102 -------------------------DEHRKGLLHMKMAEGAKLQMCYLLHHLCDIQLRHRVESIIAFSHDFVGDLQTDQL  156 (873)
Q Consensus       102 -------------------------~~~~~GLL~m~L~E~vKLqmC~lL~hLCD~qLrhRVEsivaFs~~fV~~lQ~dQ~  156 (873)
                                               ...++|||||+|||+||||||.||+||||||+|||||+||+|+++||.+||.||+
T Consensus      1874 ~eke~vt~vdd~k~~~age~~~k~~krp~~gllq~klpe~vklqmc~ll~ylcdce~~hrieaivaf~d~~vaklq~nqk 1953 (5019)
T KOG2243|consen 1874 AEKEEVTQVDDAKAQEAGEEAAKEAKRPKEGLLQMKLPEPVKLQMCELLQYLCDCELQHRIEAIVAFGDDFVAKLQANQK 1953 (5019)
T ss_pred             hhhhhhcchhhHhhhhhhhhhhhccCCchhhhhhccCCcchHHHHHHHHHHHhhhhHHhhhHhhhhhhHHHHHHhhcccc
Confidence                                     0123799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcc-CCChHHhhhhhcccCCChHHhhhhhcc-c-ccccCCCchHHHHHHHHHHHHHHHhcccccccCch---hh
Q psy13311        157 RRYIEIKQS-DLPSAVAAKKTREFRCPPREQFQNLDR-K-TLKIARVVRDLRERMDHFHESLMKQVSLLALQEPE---RR  230 (873)
Q Consensus       157 ~RY~ei~~~-~Msaa~tAkkTrEFR~pp~eQ~~~l~~-~-~~e~cp~~edlr~~l~~FH~dL~~hcg~~~~~e~~---~~  230 (873)
                      +||||+||+ |||||+|||||||||||||||++++.. + +.++|||||+||++|.+||+||+.|||++..+.++   ++
T Consensus      1954 fryne~mqalnmsaaltarktkefrsppqeqinmllnfk~~k~~cpcpeeirdel~dfhedll~hcgi~lded~~~d~~~ 2033 (5019)
T KOG2243|consen 1954 FRYNELMQALNMSAALTARKTKEFRSPPQEQINMLLNFKDDKEECPCPEEIRDELLDFHEDLLLHCGIELDEDEEEDEEE 2033 (5019)
T ss_pred             ccHHHHHHHhhhHHHhhhhhhhhccCCcHHHHHHHhhcccCccCCCCcHHHHHHHHHHHHHHHHhcCCccCccccccccc
Confidence            999999998 999999999999999999999999743 3 45899999999999999999999999995432222   12


Q ss_pred             h-----------hhhhccCCCC--CCc----------------------cc----------ccchhhhhhcccHHHHHHH
Q psy13311        231 V-----------KSIIYLGSDQ--FPC----------------------EL----------SDIGLLVRQYDSVGELIRA  265 (873)
Q Consensus       231 ~-----------~~i~~l~~~~--~p~----------------------~e----------~~fsLL~RQyd~igeL~~A  265 (873)
                      +           .+|+++.+..  .|.                      ||          .||.||||||||||||++|
T Consensus      2034 d~s~~gkl~alv~ki~~~~k~e~ekp~e~d~k~~stlkelisetmi~waqe~~ied~elvr~mf~ll~rqyd~ig~l~~a 2113 (5019)
T KOG2243|consen 2034 DLSIRGKLCALVEKIKGLKKKEAEKPTEEDEKCPSTLKELISETMICWAQEDQIEDPELVRAMFNLLHRQYDGIGELLQA 2113 (5019)
T ss_pred             ccchhhhHHHHHHHhcCCCcccccCCccccccCchHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhccHHHHHHh
Confidence            1           4566654322  121                      22          2599999999999999999


Q ss_pred             hhceEeeccCchhhHHHHHHhhhhhhcccccccChHHHHHHHHHHHHhhhccccccCchhHHHhhhhhhHHHHHHHhhhh
Q psy13311        266 LEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLGR  345 (873)
Q Consensus       266 l~kTY~I~~~s~~D~~~ll~~L~qiRsLL~Vqmg~eEE~Lm~~~L~~lmnn~vF~QHPdLmR~L~~HetVM~vMvNvLg~  345 (873)
                      |+||||||..||+||+|||++||||||||+|+||+|||.|||+|||+|||||||||||||||+||||||||+|||||||+
T Consensus      2114 l~ktyti~~~sv~dtinllaalgqirsllsvrmgkeee~lmi~glgdimnnkvfyqhpnlmr~lgmhetvmevmvnvlgg 2193 (5019)
T KOG2243|consen 2114 LPKTYTINGTSVEDTINLLAALGQIRSLLSVRMGKEEEKLMINGLGDIMNNKVFYQHPNLMRALGMHETVMEVMVNVLGG 2193 (5019)
T ss_pred             ccceeEEcCccHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhhhhcCcccccCchHHHHhhhHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccccCCCCCCCCCCCCCcccc---------ccCCCCCCccchHHHHHhhHHHhhhhcCCCCCCCCCCCCCcccccCCC
Q psy13311        346 RAQAQSDAPQTGTGQEGEPQSKH---------KENGEEPEKPGVFKKFYNFVNAVKELEEDPKVEPEPEKKTPEVLSRPS  416 (873)
Q Consensus       346 ~~~~~~~a~~~~~~~~~~~~~~~---------~~~SrqNQ~kamF~Hl~syL~av~~~L~~~~~~~~~~~ns~~~ls~ps  416 (873)
                      +++.+.          ++|++..         ++.||||| ||||+|| |||      |+          ||++|+++|+
T Consensus      2194 ~e~~ei----------~fpkmva~ccrflcyfcrisrqnq-kamfdhl-syl------le----------nssvglaspa 2245 (5019)
T KOG2243|consen 2194 GEKKEI----------AFPKMVANCCRFLCYFCRISRQNQ-KAMFDHL-SYL------LE----------NSSVGLASPA 2245 (5019)
T ss_pred             Ccccee----------ccHHHHHHHHHHHHHHhhcchhhH-HHHHHHH-HHH------Hh----------cCcccccCcc
Confidence            877653          4566653         45799999 8999999 999      99          9999999999


Q ss_pred             CCCCCCcccccccccCcHHHHHHHhhhhhhHHHHHHhhccccchhhHHhhcCCCCCCCCccccccccchhhceeecCcch
Q psy13311        417 LRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNGESV  496 (873)
Q Consensus       417 ~rg~~PldVa~ssv~dnnELalaL~E~~lekvv~yLa~cglqs~~~li~kGypdigW~PvegERyLdFLrf~VwvnGEsv  496 (873)
                      |||+||+|||++|||||||||++|+|+++||||.||||||+|||+|+++||||||||||+||||||||||||||||||||
T Consensus      2246 mrgstpldvaaasvmdnnelalal~epdlekvv~ylagcglqsc~ml~akgypdigwnpiegeryl~flrfavf~n~esv 2325 (5019)
T KOG2243|consen 2246 MRGSTPLDVAAASVMDNNELALALEEPDLEKVVRYLAGCGLQSCPMLLAKGYPDIGWNPIEGERYLDFLRFAVFCNGESV 2325 (5019)
T ss_pred             ccCCCchhhHHhhhcccchhhhhccCcCHHHHHHHHhcCCcccchHHHhCCCCCCCCCcccchhhhhhhhhheeecCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHhhcCCccccccccCcc-ccHHHHHHHHhhhhhhHhhhcCCCCCCCCCccCCCCCCCCCCchhhHhhhhhH
Q psy13311        497 EENANLVIRLLIRRPECLGPALRGEG-EGLLQAIIEANKMSDRIAARRSIIPIDDGVTDFDHPLPESEDDEDYIDTGAAI  575 (873)
Q Consensus       497 eENanvv~RLLIrrPEClGpAlrgeG-~gLl~a~~eaiklSe~~~~~~~~~~~~~~~~~~~~~l~~~e~~~d~i~~G~ai  575 (873)
                      |||||||||||||||||||||||||| +|||+||++||||+|+|+ +|+|+|.+++.+..++.-  +|+.+|+||||++|
T Consensus      2326 eena~vvvkllirrpecfgpalrgeggngllaame~aikiae~pa-~d~pspn~g~~k~~~ted--deeedd~ihmgnai 2402 (5019)
T KOG2243|consen 2326 EENANVVVKLLIRRPECFGPALRGEGGNGLLAAMEEAIKIAEDPA-LDGPSPNQGSKKELDTED--DEEEDDIIHMGNAI 2402 (5019)
T ss_pred             cccchhhhhhhhcCccccCchhcCCCcccHHHHHHhhhhhccCcc-ccCCCCCCCcccccCccc--cchhhhHHHhhHHH
Confidence            99999999999999999999999999 999999999999999999 999999999877666532  45678999999999


Q ss_pred             HHHHHHHHHhhhcCCCCchhhhhccCCCCCCCCCCCcccccccccHHHHHHHHHHHhhhhhHHHhhhhccCCCCCCCccc
Q psy13311        576 LNFYCTLVDLLGRCAPDSTVIAQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEESGGSVHPQLV  655 (873)
Q Consensus       576 l~FYs~LiDLLgrCAPd~~~i~~~~~~~~~gy~P~P~D~s~v~L~~~~~~mve~lAeN~HnvWAkkr~~~~~~~~hP~LV  655 (873)
                      ++|||+|||||||||||||+|+                                                          
T Consensus      2403 msfysalidllgrcapemhli~---------------------------------------------------------- 2424 (5019)
T KOG2243|consen 2403 MSFYSALIDLLGRCAPEMHLIH---------------------------------------------------------- 2424 (5019)
T ss_pred             HHHHHHHHHHHhccCchhheec----------------------------------------------------------
Confidence            9999999999999999999998                                                          


Q ss_pred             cccccchHHHhhhHHHHHHHHHHHHHccceeeeccccCcchhhHHHHHHhhcccccchhhhcccceeecCCCCCCCccCC
Q psy13311        656 PYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNESLRARAILRSLVPLEDLQGVLSLRFSIACPGPGEEKAKS  735 (873)
Q Consensus       656 PYd~Lt~~eK~~dRe~aqe~lk~Lq~~GY~v~~~~~~~~~e~lrara~~~rl~r~edL~~V~Sl~~~lp~~~~~~~~~~~  735 (873)
                                                          .|+.|++|+|+|+|++++++||.||||.+|++|+.++++.+.+|
T Consensus      2425 ------------------------------------~gkgeairirsilrslip~~dlvgiisi~~klpsi~kdg~v~ep 2468 (5019)
T KOG2243|consen 2425 ------------------------------------AGKGEAIRIRSILRSLIPLEDLVGIISIAFKLPSIAKDGNVSEP 2468 (5019)
T ss_pred             ------------------------------------cCCCceEeHHHHHHhhcchhheeeeEEeeecCccccCCCCcCCc
Confidence                                                66899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCchhHhhHhhhhhcccchhHHHHhhhhcccccchhhhhcccCCCChhhHHHHhhhhcccchHHHHHhhhhc
Q psy13311        736 DMPSGLIPGHKQSVVLFLERVYGIETQDLFFRILEEAFLPDLRTATMLDRSDGSESDMALAMNRYIGNSVLPLLISHAKF  815 (873)
Q Consensus       736 dm~~g~~P~HK~~~vlFLdrVyGi~~q~~~~~lle~~FLpDlraa~~ld~~~~~~~dmalalnrYi~~svlPll~~~a~~  815 (873)
                      ||.+||||+||++|||||||||||++|+|++||||+|||||||||++|||+.+|.||||||+|||||++||||||+||++
T Consensus      2469 dmaa~fcpdhka~mvlfldrvygi~~q~fllhllevgflpdlraaasldt~als~td~alalnryicsavlplltrcapl 2548 (5019)
T KOG2243|consen 2469 DMAAGFCPDHKAAMVLFLDRVYGIEDQDFLLHLLEVGFLPDLRAAASLDTAALSATDAALALNRYICSAVLPLLTRCAPL 2548 (5019)
T ss_pred             ccccCCCCCcccceEEeeehhcCcchHHHHHHHHHhccchhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhHHHHHHHHHHhcccccccccCCCcccchhHhhH---------hhhchheeeccc
Q psy13311        816 YNDADNYANLLDATLHTVYRLSKNRMLTKGQPGLGDRRRVAGK---------DLANKVTYNISY  870 (873)
Q Consensus       816 ~~~~e~~~~l~d~~lhtvYrlsk~~~ltk~qr~~~~~~l~a~~---------~~~~~~~~~~~~  870 (873)
                      |+++||+++|||++|||||||||++||||+|||+|++||+||-         .|.+.+.+++..
T Consensus      2549 fagteh~~slids~l~tiyrlskg~sltkaqrdsie~cllaic~~lrpsmlq~llrrlvfdvp~ 2612 (5019)
T KOG2243|consen 2549 FAGTEHCASLIDSLLHTIYRLSKGCSLTKAQRDSIEECLLAICGHLRPSMLQHLLRRLVFDVPL 2612 (5019)
T ss_pred             hccchHHHHHHHHHHHHHHHHhcCcchhhhhhhhHHHHHHHHHccCCHHHHHHHHHHHhcCcHh
Confidence            9999999999999999999999999999999999999999986         566666666543

>KOG2243|consensus Back     alignment and domain information
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor [] Back     alignment and domain information
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels Back     alignment and domain information
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels Back     alignment and domain information
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor [] Back     alignment and domain information
>KOG3533|consensus Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query873
4etu_A210 Crystal Structure Of Rabbit Ryanodine Receptor 1 Mu 3e-22
3rqr_A227 Crystal Structure Of The Ryr Domain Of The Rabbit R 5e-22
4esu_A210 Crystal Structure Of Rabbit Ryanodine Receptor 1 Mu 6e-22
4ett_A210 Crystal Structure Of Rabbit Ryanodine Receptor 1 Mu 7e-22
4ert_A210 Crystal Structure Of Rabbit Ryanodine Receptor 1 (2 7e-22
4erv_A207 Crystal Structure Of Human Ryanodine Receptor 3 (25 4e-17
4etv_A209 Crystal Structure Of Mouse Ryanodine Receptor 2 (26 1e-16
3nrt_A103 The Crystal Strucutre Of Putative Ryanodine Recepto 9e-08
>pdb|4ETU|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 Mutant R2939s Length = 210 Back     alignment and structure 
Iteration: 1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 63/85 (74%), Gaps = 3/85 (3%)
Query: 607 YHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---SGGSVHPQLVPYDLLTDK 663
           Y+P P D++ +TLSRE+Q MAE+LAEN H+ W +KKK+E    GG  HP LVPYD LT K
Sbjct: 125 YNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTHPLLVPYDTLTAK 184
Query: 664 EKKKDRERSQEFLKYLQYQGYKLRS 688
           EK +DRE++QE LK+LQ  GY + S
Sbjct: 185 EKARDREKAQELLKFLQMNGYAVTS 209
>pdb|3RQR|A Chain A, Crystal Structure Of The Ryr Domain Of The Rabbit Ryanodine Receptor Length = 227 Back     alignment and structure
>pdb|4ESU|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 Mutant S2776m Length = 210 Back     alignment and structure
>pdb|4ETT|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 Mutant E2764k Length = 210 Back     alignment and structure
>pdb|4ERT|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (2734-2940) Length = 210 Back     alignment and structure
>pdb|4ERV|A Chain A, Crystal Structure Of Human Ryanodine Receptor 3 (2597-2800) Length = 207 Back     alignment and structure
>pdb|4ETV|A Chain A, Crystal Structure Of Mouse Ryanodine Receptor 2 (2699-2904) Length = 209 Back     alignment and structure
>pdb|3NRT|A Chain A, The Crystal Strucutre Of Putative Ryanodine Receptor From Bacteroides Thetaiotaomicron Vpi-5482 Length = 103 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query873
4esu_A210 Ryanodine receptor 1; phosphorylation, skeletal, m 2e-32
4esu_A210 Ryanodine receptor 1; phosphorylation, skeletal, m 5e-19
4etv_A209 Ryanodine receptor 2; phosphorylation, cardiac, me 5e-32
4etv_A209 Ryanodine receptor 2; phosphorylation, cardiac, me 1e-18
4erv_A207 Ryanodine receptor 3; metal transport; 1.75A {Homo 6e-32
4erv_A207 Ryanodine receptor 3; metal transport; 1.75A {Homo 2e-19
3nrt_A103 Putative ryanodine receptor; PSI-2, protein struct 7e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport; 1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A 3rqr_A Length = 210 Back     alignment and structure
 Score =  124 bits (311), Expect = 2e-32
 Identities = 48/93 (51%), Positives = 62/93 (66%), Gaps = 3/93 (3%)

Query: 597 AQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---SGGSVHPQ 653
                     Y+P P D++ +TLSRE+Q MAE+LAEN H+ W +KKK+E    GG  HP 
Sbjct: 115 TAQTYDPREGYNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTHPL 174

Query: 654 LVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKL 686
           LVPYD LT KEK +DRE++QE LK+LQ  GY +
Sbjct: 175 LVPYDTLTAKEKARDREKAQELLKFLQMNGYAV 207
>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport; 1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A 3rqr_A Length = 210 Back     alignment and structure
>4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus} Length = 209 Back     alignment and structure
>4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus} Length = 209 Back     alignment and structure
>4erv_A Ryanodine receptor 3; metal transport; 1.75A {Homo sapiens} Length = 207 Back     alignment and structure
>4erv_A Ryanodine receptor 3; metal transport; 1.75A {Homo sapiens} Length = 207 Back     alignment and structure
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative, structural genomics, MI center for structural genomics (MCSG); 2.54A {Bacteroides thetaiotaomicron} Length = 103 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query873
4erv_A207 Ryanodine receptor 3; metal transport; 1.75A {Homo 100.0
4esu_A210 Ryanodine receptor 1; phosphorylation, skeletal, m 100.0
4etv_A209 Ryanodine receptor 2; phosphorylation, cardiac, me 100.0
3nrt_A103 Putative ryanodine receptor; PSI-2, protein struct 99.88
4erv_A207 Ryanodine receptor 3; metal transport; 1.75A {Homo 99.73
4etv_A209 Ryanodine receptor 2; phosphorylation, cardiac, me 99.73
4esu_A210 Ryanodine receptor 1; phosphorylation, skeletal, m 99.65
3nrt_A103 Putative ryanodine receptor; PSI-2, protein struct 98.19
>4erv_A Ryanodine receptor 3; metal transport; 1.75A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.2e-41  Score=340.71  Aligned_cols=189  Identities=32%  Similarity=0.493  Sum_probs=155.7

Q ss_pred             CCCCCCcccccccccCcHHHHHH---HhhhhhhHHHHHHhhccccchhhHHhhcCCCCCCCCccccccccchhhceeecC
Q psy13311        417 LRGSTPLDVAYSSVMENTELALA---LREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNG  493 (873)
Q Consensus       417 ~rg~~PldVa~ssv~dnnELala---L~E~~lekvv~yLa~cglqs~~~li~kGypdigW~PvegERyLdFLrf~VwvnG  493 (873)
                      .++|+|.||++++|..|+.|...   |+|+.||+|+           .+++++|                      |+||
T Consensus         2 ~~~~~P~Pvdts~v~lp~~l~~l~eklAe~~He~Wa-----------~~k~~~G----------------------W~yG   48 (207)
T 4erv_A            2 NANFDPKPINTMNFSLPEKLEYIVTKYAEHSHDKWA-----------CDKSQSG----------------------WKYG   48 (207)
T ss_dssp             ---CCCCCCCCTTCCCCHHHHHHHHHHHHHHHHHHH-----------HHHHHTT----------------------CBCC
T ss_pred             CCCCCCCCcccCceeccHHHHHHHHHHHHHhHHHHH-----------HHHHHcC----------------------CccC
Confidence            46799999999999999887764   7799999999           9999999                      9999


Q ss_pred             cchhhhhhhhHHHhhcCCccccccccCccccHHHHHHHHhhhhhhHhhhcCCCCCCCCCccCCCCCCCCCCchhhHhhhh
Q psy13311        494 ESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAIIEANKMSDRIAARRSIIPIDDGVTDFDHPLPESEDDEDYIDTGA  573 (873)
Q Consensus       494 EsveENanvv~RLLIrrPEClGpAlrgeG~gLl~a~~eaiklSe~~~~~~~~~~~~~~~~~~~~~l~~~e~~~d~i~~G~  573 (873)
                      |..+++++.|++|                       +++..|||+.++.+.              .+..++.+.++++||
T Consensus        49 ~~~dd~~k~HP~L-----------------------vp~~~L~e~eK~~~r--------------~~~~e~lk~lla~G~   91 (207)
T 4erv_A           49 ISLDENVKTHPLI-----------------------RPFKTLTEKEKEIYR--------------WPARESLKTMLAVGW   91 (207)
T ss_dssp             SSCBTTTTBCTTC-----------------------SCGGGSCHHHHHHHH--------------HHHHHHHHHHHHTTC
T ss_pred             cccccccccCccc-----------------------CChhhCCHHHHHHHH--------------HHHHHHHHHHHHcCc
Confidence            9999999999966                       668888887775421              122467788899999


Q ss_pred             hHHHHHHHHHHhhhcCCCCc---------hhhhhccCC-CCCCCCCCCcccccccccHHHHHHHHHHHhhhhhHHHhhhh
Q psy13311        574 AILNFYCTLVDLLGRCAPDS---------TVIAQDMGS-GPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKK  643 (873)
Q Consensus       574 ail~FYs~LiDLLgrCAPd~---------~~i~~~~~~-~~~gy~P~P~D~s~v~L~~~~~~mve~lAeN~HnvWAkkr~  643 (873)
                      .|.            .+.+.         ..+++.+.+ +++||+|+|+|+|+|+|++++++|||+||||+||||||+|+
T Consensus        92 ~I~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~P~P~Dls~v~Ls~~~~~lve~LAen~H~vWa~~r~  159 (207)
T 4erv_A           92 TVE------------RTKEGEALVQQRENEKLRSVSQANQGNSYSPAPLDLSNVVLSRELQGMVEVVAENYHNIWAKKKK  159 (207)
T ss_dssp             EEE------------ECC-CTTHHHHHHHHHHCCC--------CCCCCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEe------------ecCCcchhhhccchhhcccccccccccCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            987            33332         112222222 58899999999999999999999999999999999999999


Q ss_pred             cc---CCCCCCCccccccccchHHHhhhHHHHHHHHHHHHHccceee
Q psy13311        644 EE---SGGSVHPQLVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKLR  687 (873)
Q Consensus       644 ~~---~~~~~hP~LVPYd~Lt~~eK~~dRe~aqe~lk~Lq~~GY~v~  687 (873)
                      ++   .|+|+||+|||||+||++||++||++|+|++||||.+||.|.
T Consensus       160 ~~~~~~g~~~hP~LVPy~~L~~~eK~~dR~~a~e~~k~L~~~Gy~i~  206 (207)
T 4erv_A          160 LELESKGGGSHPLLVPYDTLTAAEKFKDREKAQDLFKFLQVNGIIVS  206 (207)
T ss_dssp             HHHHHTTCCCCTTCSCGGGSCHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred             HHHHhccCCCCCCccChHhcCHHHHHHhHHHHHHHHHHHHHhcceee
Confidence            76   579999999999999999999999999999999999999985
>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport; 1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A 3rqr_A Back     alignment and structure
>4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus} Back     alignment and structure
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative, structural genomics, MI center for structural genomics (MCSG); 2.54A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4erv_A Ryanodine receptor 3; metal transport; 1.75A {Homo sapiens} Back     alignment and structure
>4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport; 1.65A {Mus musculus} Back     alignment and structure
>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport; 1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A 3rqr_A Back     alignment and structure
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative, structural genomics, MI center for structural genomics (MCSG); 2.54A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00