Psyllid ID: psy13322

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccEEccHHHHHHHHHHHHHHccEEEEccccccccccccHHHHHHcccccccHHHHccccccccccHHHcccHHHHHHcccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccEcccccEcccccHHHHHHHHHHHcccEEEEEccccccccccccEEEEEcccccccHHHHHHHHHccccEEEEEccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mhpdvyrgiwggqrcryspiqttrycscplnqceaSNKFYEQLVNAFQYNVPITGAAALIAESIqgvsgvkefPRYFLRRAYELIKsnnglfisdevqtgfgrtgdnywgfemhgvsPDIVTMAKGiangfpmgavVTTTEIAQVLTKAAHfntfggnpvGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV
Flexible Loop (DISEMBL)
mhpdvyrgiwggqrcryspIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEElqynckqvsaqiigYLRVV
Low Complexity Region (SEG)
MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV
Disordered region (IsUnstruct)
****VYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR**
Disordered Region (DISOPRED)
MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV
Disordered Region (DISEMBL)
MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV
Disordered Region (DISPRO)
*HPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q9BYV1	514	Alanine--glyoxylate amino	yes	N/A	0.964	0.365	0.536	4e-56
Q17QF0	514	Alanine--glyoxylate amino	yes	N/A	0.964	0.365	0.526	3e-55
Q3UEG6	513	Alanine--glyoxylate amino	yes	N/A	0.964	0.366	0.531	1e-54
Q5RFA3	514	Alanine--glyoxylate amino	yes	N/A	0.964	0.365	0.536	2e-54
Q64565	512	Alanine--glyoxylate amino	yes	N/A	0.964	0.367	0.521	4e-54
Q94AL9	477	Alanine--glyoxylate amino	yes	N/A	0.835	0.341	0.465	8e-38
Q940M2	476	Alanine--glyoxylate amino	no	N/A	0.882	0.361	0.425	5e-36
Q9SR86	481	Alanine--glyoxylate amino	no	N/A	0.846	0.343	0.420	2e-35
Q9VU95	494	Alanine--glyoxylate amino	no	N/A	0.635	0.251	0.523	2e-29
Q8TBG4	499	Ethanolamine-phosphate ph	no	N/A	0.702	0.274	0.446	3e-28

>sp|Q9BYV1|AGT2_HUMAN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1

 Score =  217 bits (553), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 134/190 (70%), Gaps = 2/190 (1%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M PDV+RG WGG  CR SP+QT R CSC  + C+A +++ EQ  +    +V     A   
Sbjct: 227 MCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSV-AKSIAGFF 285

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AE IQGV+GV ++P+ FL+ A+EL+++  G+ I+DEVQTGFGR G ++WGF+ H V PDI
Sbjct: 286 AEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDI 345

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKA-AHFNTFGGNPVGCVIASTVLDVIKDEELQY 179
           VTMAKGI NGFPM AV+TT EIA+ L K   HFNTFGGNP+ C I S VL+VIK+E LQ 
Sbjct: 346 VTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFGGNPMACAIGSAVLEVIKEENLQE 405

Query: 180 NCKQVSAQII 189
           N ++V   ++
Sbjct: 406 NSQEVGTYML 415

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 4EC: 0

>sp|Q17QF0|AGT2_BOVIN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Bos taurus GN=AGXT2 PE=2 SV=1

 Score =  214 bits (544), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 133/190 (70%), Gaps = 2/190 (1%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M PD++ G WGG  CR SP+QT R CSC  + C+A +++ EQ  +    +V     A   
Sbjct: 227 MCPDIFHGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSV-AKSIAGFF 285

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AE IQGV+GV ++P+ FL+ A+EL++   G+ I+DEVQTGFGR G ++WGF+ H V PDI
Sbjct: 286 AEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDI 345

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTK-AAHFNTFGGNPVGCVIASTVLDVIKDEELQY 179
           VTMAKGI NGFPM AVVTT +IA+ LTK   HFNTFGGNP+ C + S VL+VIK+E LQ 
Sbjct: 346 VTMAKGIGNGFPMAAVVTTPDIAKSLTKRMLHFNTFGGNPMACAVGSAVLEVIKEENLQE 405

Query: 180 NCKQVSAQII 189
           N ++V   ++
Sbjct: 406 NSQEVGTYML 415

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q3UEG6|AGT2_MOUSE Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Mus musculus GN=Agxt2 PE=2 SV=1

 Score =  212 bits (540), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 132/190 (69%), Gaps = 2/190 (1%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M PDV+RG WGG  CR SP+QT R CSC  + C+A  ++ EQ  +    +V  T  A   
Sbjct: 226 MCPDVFRGPWGGIHCRDSPVQTVRDCSCAPDCCQAKERYIEQFKDTLNTSV-ATSIAGFF 284

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AE IQGV+GV ++P+ FL+ A+ L++   G+ I+DEVQTGFGR G ++WGF+ H V PDI
Sbjct: 285 AEPIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDI 344

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTK-AAHFNTFGGNPVGCVIASTVLDVIKDEELQY 179
           VTMAKGI NGFPM AVVTT EIA+ L K   HF+TFGGNP+ C I S VL+VI++E LQ 
Sbjct: 345 VTMAKGIGNGFPMAAVVTTPEIAKSLAKRLLHFSTFGGNPLACAIGSAVLEVIEEENLQR 404

Query: 180 NCKQVSAQII 189
           N ++V   ++
Sbjct: 405 NSQEVGTYML 414

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q5RFA3|AGT2_PONAB Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo abelii GN=AGXT2 PE=2 SV=1

 Score =  212 bits (539), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 133/190 (70%), Gaps = 2/190 (1%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M PDV+RG WGG  CR SP+QT R CSC  + C+A +++ EQ  +    +V     A   
Sbjct: 227 MCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSV-AKSIAGFF 285

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AE IQGV+GV ++P+ FL+ A+EL+++  G+ I+DEVQTGFGR G ++ GF+ H V PDI
Sbjct: 286 AEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFRGFQTHDVLPDI 345

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTK-AAHFNTFGGNPVGCVIASTVLDVIKDEELQY 179
           VTMAKGI NGFPM AVVTT EIA+ L K   HFNTFGGNP+ C I S VL+VIK+E LQ 
Sbjct: 346 VTMAKGIGNGFPMAAVVTTPEIAKSLVKRLQHFNTFGGNPMACAIGSAVLEVIKEENLQE 405

Query: 180 NCKQVSAQII 189
           N ++V   ++
Sbjct: 406 NSQEVGTYML 415

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q64565|AGT2_RAT Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Rattus norvegicus GN=Agxt2 PE=1 SV=2

 Score =  210 bits (535), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 130/190 (68%), Gaps = 2/190 (1%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M PDV+RG WGG  CR SP+QT R CSC  + C+A  ++ EQ  +    +V  T  A   
Sbjct: 225 MCPDVFRGPWGGSHCRDSPVQTVRKCSCAPDGCQAKERYIEQFKDTLNTSV-ATSIAGFF 283

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AE IQGV+GV ++P+ FL+ A+ L++   G+ I+DEVQTGFGR G ++WGF+ H   PDI
Sbjct: 284 AEPIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTHDTMPDI 343

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTK-AAHFNTFGGNPVGCVIASTVLDVIKDEELQY 179
           VTMAKGI NGFPM AVVTT EIA  L K   HF+TFGG+P+ C I S VL+VI++E LQ 
Sbjct: 344 VTMAKGIGNGFPMAAVVTTPEIASSLAKHLHHFSTFGGSPLACAIGSAVLEVIEEENLQR 403

Query: 180 NCKQVSAQII 189
           N ++V   ++
Sbjct: 404 NSQEVGTYML 413

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q94AL9|AGT22_ARATH Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=AGT3 PE=2 SV=2

 Score =  156 bits (395), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 112/189 (59%), Gaps = 26/189 (13%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGA-AAL 59
           ++PD YRG++G                          K+ + L +  QY    TG  A  
Sbjct: 221 LNPDPYRGVFGSD----------------------GEKYAKDLQDLIQYGT--TGHIAGF 256

Query: 60  IAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119
           I E+IQGV G+ E    +L  AY+ +K   GLFI+DEVQ+GF RTG N+WGFE H V PD
Sbjct: 257 ICEAIQGVGGIVELAPGYLSAAYDTVKKAGGLFIADEVQSGFARTG-NFWGFEAHNVVPD 315

Query: 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQY 179
           IVTMAKGI NGFP+GAVVTT EIA VLT+ ++FNTFGGN V       VL+VI+ E+LQ 
Sbjct: 316 IVTMAKGIGNGFPLGAVVTTPEIAGVLTRRSYFNTFGGNSVSTTAGLAVLNVIEKEKLQE 375

Query: 180 NCKQVSAQI 188
           N   V + +
Sbjct: 376 NAAMVGSYL 384

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q940M2|AGT21_ARATH Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1

 Score =  150 bits (379), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 111/195 (56%), Gaps = 23/195 (11%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           ++PD YRG++G     Y+                      + + +  +Y       A  I
Sbjct: 219 VNPDPYRGVFGSDGSLYA----------------------KDVHDHIEYGTS-GKVAGFI 255

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AE+IQGV G  E    +L+  YE++++  G+ I+DEVQTGFGRTG +YWGF+   V PDI
Sbjct: 256 AETIQGVGGAVELAPGYLKSVYEIVRNAGGVCIADEVQTGFGRTGSHYWGFQTQDVVPDI 315

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           VTMAKGI NG P+GAVVTT EIA VL     FNTFGGNPV       VL+VI  E+ Q +
Sbjct: 316 VTMAKGIGNGLPLGAVVTTPEIASVLASKILFNTFGGNPVCSAGGLAVLNVIDKEKRQEH 375

Query: 181 CKQVSAQIIGYLRVV 195
           C +V + +I  L+ V
Sbjct: 376 CAEVGSHLIQRLKDV 390

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q9SR86|AGT23_ARATH Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 109/188 (57%), Gaps = 23/188 (12%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           ++PD YRGI+G                          K+   + +  Q+       A  I
Sbjct: 224 INPDPYRGIFGSD----------------------GEKYASDVHDLIQFGTS-GQVAGFI 260

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
            ESIQGV G+ E    +L  AY++++   G+ I+DEVQ+GF RTG ++WGF+ HGV PDI
Sbjct: 261 GESIQGVGGIVELAPGYLPAAYDIVRKAGGVCIADEVQSGFARTGTHFWGFQSHGVIPDI 320

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           VTMAKGI NG P+GAVVTT EIA VL++ ++FNTFGGNP+       VL V+ +E+LQ N
Sbjct: 321 VTMAKGIGNGIPLGAVVTTPEIAGVLSRRSYFNTFGGNPMCTAAGHAVLRVLHEEKLQEN 380

Query: 181 CKQVSAQI 188
              V + +
Sbjct: 381 ANLVGSHL 388

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q9VU95|AGT2L_DROME Alanine--glyoxylate aminotransferase 2-like OS=Drosophila melanogaster GN=CG8745 PE=2 SV=2

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 84/126 (66%), Gaps = 2/126 (1%)

Query: 55  GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
           G AA IAES+Q   G    P  + +  Y+ ++S  G+ I+DEVQ GFGR G +YW FE  
Sbjct: 221 GVAAFIAESLQSCGGQILPPAGYFQAVYDAVRSAGGVCIADEVQVGFGRVGSHYWAFETQ 280

Query: 115 GVSPDIVTMAKGIANGFPMGAVVTTTEIAQVL--TKAAHFNTFGGNPVGCVIASTVLDVI 172
            V PDIV +AK + NG P+GAVVTT EIAQ    T  A+FNT+GGNPV C IA+ V+ VI
Sbjct: 281 NVIPDIVCVAKPMGNGHPVGAVVTTPEIAQAFHATGVAYFNTYGGNPVSCAIANAVMRVI 340

Query: 173 KDEELQ 178
           ++E LQ
Sbjct: 341 EEEGLQ 346

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8TBG4|AT2L1_HUMAN Ethanolamine-phosphate phospho-lyase OS=Homo sapiens GN=AGXT2L1 PE=1 SV=1

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 89/141 (63%), Gaps = 4/141 (2%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA IAES+Q   G    P  + ++  E +    G+FI+DEVQ GFGR G ++W F+M+G 
Sbjct: 208 AAFIAESMQSCGGQIIPPAGYFQKVAEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGE 267

Query: 117 S--PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVI 172
              PDIVTM K + NG P+  VVTT EIA+  + +   +FNT+GGNPV C +   VLD+I
Sbjct: 268 DFVPDIVTMGKPMGNGHPVACVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDII 327

Query: 173 KDEELQYNCKQVSAQIIGYLR 193
           ++E+LQ N K+V   +   L+
Sbjct: 328 ENEDLQGNAKRVGNYLTELLK 348

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
270014922	444	hypothetical protein TcasGA2_TC011528 [T	0.943	0.414	0.614	1e-66
91094349	466	PREDICTED: similar to GA10859-PA [Tribol	0.943	0.394	0.614	1e-66
157107422	505	alanine-glyoxylate aminotransferase [Aed	0.969	0.374	0.560	2e-63
157107424	508	alanine-glyoxylate aminotransferase [Aed	0.969	0.372	0.560	3e-63
158300150	506	AGAP012404-PA [Anopheles gambiae str. PE	0.969	0.373	0.571	7e-63
328711314	499	PREDICTED: alanine--glyoxylate aminotran	0.984	0.384	0.578	2e-62
170056928	505	alanine-glyoxylate aminotransferase [Cul	0.969	0.374	0.555	2e-61
195127744	491	GI11871 [Drosophila mojavensis] gi|19391	0.989	0.393	0.564	2e-61
195441642	495	GK20568 [Drosophila willistoni] gi|19416	0.943	0.371	0.580	3e-61
170039440	510	alanine-glyoxylate aminotransferase [Cul	0.969	0.370	0.550	3e-61

>gi|270014922|gb|EFA11370.1| hypothetical protein TcasGA2_TC011528 [Tribolium castaneum]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 113/184 (61%), Positives = 144/184 (78%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M+PDVYRG+WGG  CR SPIQT+R CSC +  CEA +K+ EQL + F+YNV   G AA  
Sbjct: 162 MNPDVYRGLWGGTHCRDSPIQTSRSCSCSVENCEAKDKYLEQLRDIFKYNVRPGGLAAFF 221

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AESIQGV G  +FP+ +++ AY+L+K + GLFISDEVQTGFGRTG+++WGFEMHG+ PDI
Sbjct: 222 AESIQGVGGTVQFPKGYIKGAYKLVKEHGGLFISDEVQTGFGRTGEHFWGFEMHGIEPDI 281

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           VTMAK + NGFP+ AVVT  EIAQ L  + HFNTFGGNP+ C +  TVLD+I++E+LQ N
Sbjct: 282 VTMAKSMGNGFPLAAVVTRPEIAQALASSMHFNTFGGNPLACTVGITVLDIIEEEQLQKN 341

Query: 181 CKQV 184
           C ++
Sbjct: 342 CLEI 345

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094349|ref|XP_969816.1| PREDICTED: similar to GA10859-PA [Tribolium castaneum]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 113/184 (61%), Positives = 144/184 (78%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M+PDVYRG+WGG  CR SPIQT+R CSC +  CEA +K+ EQL + F+YNV   G AA  
Sbjct: 184 MNPDVYRGLWGGTHCRDSPIQTSRSCSCSVENCEAKDKYLEQLRDIFKYNVRPGGLAAFF 243

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AESIQGV G  +FP+ +++ AY+L+K + GLFISDEVQTGFGRTG+++WGFEMHG+ PDI
Sbjct: 244 AESIQGVGGTVQFPKGYIKGAYKLVKEHGGLFISDEVQTGFGRTGEHFWGFEMHGIEPDI 303

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           VTMAK + NGFP+ AVVT  EIAQ L  + HFNTFGGNP+ C +  TVLD+I++E+LQ N
Sbjct: 304 VTMAKSMGNGFPLAAVVTRPEIAQALASSMHFNTFGGNPLACTVGITVLDIIEEEQLQKN 363

Query: 181 CKQV 184
           C ++
Sbjct: 364 CLEI 367

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107422|ref|XP_001649770.1| alanine-glyoxylate aminotransferase [Aedes aegypti] gi|108884056|gb|EAT48281.1| AAEL000640-PB [Aedes aegypti]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 106/189 (56%), Positives = 146/189 (77%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M+PD Y GIWGG+ CR SP+QTTR+C CP +QC AS ++YEQL   F+Y++P    AA+ 
Sbjct: 216 MNPDPYTGIWGGKNCRDSPVQTTRHCDCPADQCLASGRYYEQLEQIFKYSLPRGKVAAMF 275

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AESIQGV G  +FP+ ++++A EL+++N GLF++DEVQTGF RTG++YWGFE H + PDI
Sbjct: 276 AESIQGVGGTVQFPKGYIKKAAELVRANGGLFVADEVQTGFARTGEHYWGFEGHDIVPDI 335

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           VTMAKGI NGFP+GAVVT+ ++A+ L++A HFNT+GGNP+   +   VLDVI++E LQ N
Sbjct: 336 VTMAKGIGNGFPIGAVVTSRKVAETLSQALHFNTYGGNPLASAVGIAVLDVIEEEGLQRN 395

Query: 181 CKQVSAQII 189
            + V   ++
Sbjct: 396 ARDVGTYLL 404

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107424|ref|XP_001649771.1| alanine-glyoxylate aminotransferase [Aedes aegypti] gi|108884057|gb|EAT48282.1| AAEL000640-PA [Aedes aegypti]

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 106/189 (56%), Positives = 146/189 (77%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M+PD Y GIWGG+ CR SP+QTTR+C CP +QC AS ++YEQL   F+Y++P    AA+ 
Sbjct: 216 MNPDPYTGIWGGKNCRDSPVQTTRHCDCPADQCLASGRYYEQLEQIFKYSLPRGKVAAMF 275

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AESIQGV G  +FP+ ++++A EL+++N GLF++DEVQTGF RTG++YWGFE H + PDI
Sbjct: 276 AESIQGVGGTVQFPKGYIKKAAELVRANGGLFVADEVQTGFARTGEHYWGFEGHDIVPDI 335

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           VTMAKGI NGFP+GAVVT+ ++A+ L++A HFNT+GGNP+   +   VLDVI++E LQ N
Sbjct: 336 VTMAKGIGNGFPIGAVVTSRKVAETLSQALHFNTYGGNPLASAVGIAVLDVIEEEGLQRN 395

Query: 181 CKQVSAQII 189
            + V   ++
Sbjct: 396 ARDVGTYLL 404

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300150|ref|XP_551780.3| AGAP012404-PA [Anopheles gambiae str. PEST] gi|157013019|gb|EAL38668.3| AGAP012404-PA [Anopheles gambiae str. PEST]

 Score =  245 bits (626), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 144/189 (76%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M+PD Y GIWGG++CR SP+QTTR C C   QC+A++ +Y+QL   F+Y++P    A + 
Sbjct: 220 MNPDPYTGIWGGKQCRDSPVQTTRSCDCQEGQCKATDMYYDQLEQLFKYSLPRGKVAGMF 279

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AESIQGV G  ++ + +++RA EL+++N GLFISDEVQ+GFGRTG++YWGFE H + PDI
Sbjct: 280 AESIQGVGGTVQYTKGYIKRAAELVRANGGLFISDEVQSGFGRTGEHYWGFEAHDIVPDI 339

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           VTMAKGI NGFPMGAVVT+ ++A+VL +A HFNTFGGNP+ C +   VLDVI +EELQ N
Sbjct: 340 VTMAKGIGNGFPMGAVVTSRKVAEVLCQALHFNTFGGNPLACAVGMAVLDVIDEEELQKN 399

Query: 181 CKQVSAQII 189
              V   ++
Sbjct: 400 SLDVGTYML 408

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711314|ref|XP_001947837.2| PREDICTED: alanine--glyoxylate aminotransferase 2, mitochondrial-like [Acyrthosiphon pisum]

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 140/192 (72%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M PDV++GIWGG++CR SP+QT R C C   +C A++K+YEQL + F Y++P    A   
Sbjct: 203 MCPDVFKGIWGGKKCRDSPVQTQRSCECDRVRCHAADKYYEQLEDIFSYSIPRGKVAGFF 262

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AESIQGV G+ +FPR +L+R YELI+SN GL ++DEVQTGFGRTG+++W F+ HGV+PDI
Sbjct: 263 AESIQGVGGIVQFPRGYLKRVYELIRSNGGLCVADEVQTGFGRTGEHFWNFQSHGVTPDI 322

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           VTMAKGI NGFPM AVVTT  IA+ L    HFNTFGGNPV C +  +VL VI +E LQ N
Sbjct: 323 VTMAKGIGNGFPMAAVVTTPAIARSLNSGFHFNTFGGNPVSCAVGVSVLKVIDEEGLQKN 382

Query: 181 CKQVSAQIIGYL 192
           C  V    +  L
Sbjct: 383 CLDVGTYFLEKL 394

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170056928|ref|XP_001864253.1| alanine-glyoxylate aminotransferase [Culex quinquefasciatus] gi|167876540|gb|EDS39923.1| alanine-glyoxylate aminotransferase [Culex quinquefasciatus]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 105/189 (55%), Positives = 143/189 (75%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M+PD Y GIWGG+ CR SPIQT R+C CP +QC AS K+Y +L   F+Y++P    AA+ 
Sbjct: 213 MNPDPYSGIWGGKNCRDSPIQTNRHCDCPADQCLASGKYYNELEQVFKYSLPRGKVAAMF 272

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AESIQGV G  ++P+ +++RA EL+++N GLF++DEVQ+GF RTG++YWGFE H + PDI
Sbjct: 273 AESIQGVGGTVQYPKGYIKRAAELVRANGGLFVADEVQSGFARTGEHYWGFEGHDIVPDI 332

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           VTMAKGI NGFP+GAVVT+ ++A+VL++A HFNT+GGNP+   +   VLDVI +E LQ N
Sbjct: 333 VTMAKGIGNGFPIGAVVTSRKVAEVLSQALHFNTYGGNPLASAVGIAVLDVIDEEGLQKN 392

Query: 181 CKQVSAQII 189
              V   ++
Sbjct: 393 ALDVGTYLL 401

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195127744|ref|XP_002008328.1| GI11871 [Drosophila mojavensis] gi|193919937|gb|EDW18804.1| GI11871 [Drosophila mojavensis]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 141/193 (73%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M+PD Y+GIWGG  CR SP+QTTR CSCP N+C+A   +Y +L   F+Y++P    AA+ 
Sbjct: 205 MNPDPYQGIWGGSACRDSPVQTTRSCSCPPNECQAGVNYYNELEQTFKYSLPRGKVAAMF 264

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AESIQGV G  +FP+ +L+RA +L+ +N GL ++DEVQTGFGRTGD++WGFE HG  PDI
Sbjct: 265 AESIQGVGGTVQFPKGYLKRAADLVHANGGLIVADEVQTGFGRTGDHFWGFEAHGYMPDI 324

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           VTMAKGI NGFP+ AVVTT EIA  L  A HFNT+GGNP+   +  +VLDVI++E+LQ N
Sbjct: 325 VTMAKGIGNGFPLAAVVTTPEIAASLGMALHFNTYGGNPMASAVGISVLDVIEEEQLQRN 384

Query: 181 CKQVSAQIIGYLR 193
             +V    +  L 
Sbjct: 385 SLEVGTYFLNCLE 397

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195441642|ref|XP_002068613.1| GK20568 [Drosophila willistoni] gi|194164698|gb|EDW79599.1| GK20568 [Drosophila willistoni]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/186 (58%), Positives = 141/186 (75%), Gaps = 2/186 (1%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSC--PLNQCEASNKFYEQLVNAFQYNVPITGAAA 58
           M+PD YRG+WGG  CR SPIQT R C+C  P ++C+A   +Y++L   F+Y++P    AA
Sbjct: 208 MNPDPYRGLWGGSACRDSPIQTQRTCNCASPADECQAGLAYYKELEEVFKYSLPRGKVAA 267

Query: 59  LIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118
           + AESIQGV G  ++PR +L+RA  L+++N GLF++DEVQTGFGRTG+++WGFE H   P
Sbjct: 268 MFAESIQGVGGTVQYPRGYLKRAAALVRANGGLFVADEVQTGFGRTGEHFWGFEAHDYQP 327

Query: 119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQ 178
           DIVTMAKGI NGFP+ AVVTT EIA  L KA HFNTFGGNP+   +  +VL+VI++E+LQ
Sbjct: 328 DIVTMAKGIGNGFPLAAVVTTPEIASCLNKALHFNTFGGNPMASAVGMSVLEVIEEEQLQ 387

Query: 179 YNCKQV 184
            NCK V
Sbjct: 388 SNCKNV 393

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170039440|ref|XP_001847542.1| alanine-glyoxylate aminotransferase [Culex quinquefasciatus] gi|167863019|gb|EDS26402.1| alanine-glyoxylate aminotransferase [Culex quinquefasciatus]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 104/189 (55%), Positives = 143/189 (75%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
           M+PD Y GIWGG+ CR SP+QT R+C CP +QC AS K+Y +L   F+Y++P    AA+ 
Sbjct: 218 MNPDPYSGIWGGKNCRDSPVQTNRHCDCPADQCLASGKYYNELEQVFKYSLPRGKVAAMF 277

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AESIQGV G  ++P+ +++RA EL+++N GLF++DEVQ+GF RTG++YWGFE H + PDI
Sbjct: 278 AESIQGVGGTVQYPKGYIKRAAELVRANGGLFVADEVQSGFARTGEHYWGFEGHDIVPDI 337

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           VTMAKGI NGFP+GAVVT+ ++A+VL++A HFNT+GGNP+   +   VLDVI +E LQ N
Sbjct: 338 VTMAKGIGNGFPIGAVVTSRKVAEVLSQALHFNTYGGNPLASAVGIAVLDVIDEEGLQKN 397

Query: 181 CKQVSAQII 189
              V   ++
Sbjct: 398 ALDVGTYLL 406

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
FB|FBgn0037186	518	CG11241 [Drosophila melanogast	0.964	0.362	0.550	1.6e-56
ZFIN|ZDB-GENE-050913-100	517	agxt2 "alanine-glyoxylate amin	0.964	0.363	0.529	2.6e-54
UNIPROTKB|E2QZD7	514	AGXT2 "Uncharacterized protein	0.964	0.365	0.547	5.5e-54
UNIPROTKB|F1SND2	515	AGXT2 "Uncharacterized protein	0.964	0.365	0.552	7e-54
UNIPROTKB|F1NQJ1	479	AGXT2 "Uncharacterized protein	0.964	0.392	0.534	8.9e-54
UNIPROTKB|Q9BYV1	514	AGXT2 "Alanine--glyoxylate ami	0.964	0.365	0.536	1e-52
UNIPROTKB|F1MLG7	514	AGXT2 "Alanine--glyoxylate ami	0.964	0.365	0.526	4.4e-52
UNIPROTKB|Q17QF0	514	AGXT2 "Alanine--glyoxylate ami	0.964	0.365	0.526	4.4e-52
MGI|MGI:2146052	513	Agxt2 "alanine-glyoxylate amin	0.964	0.366	0.531	1.9e-51
RGD|621767	512	Agxt2 "alanine-glyoxylate amin	0.964	0.367	0.521	6.5e-51

FB|FBgn0037186 CG11241 [Drosophila melanogaster (taxid:7227)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 104/189 (55%), Positives = 139/189 (73%)

Query:     1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
             M+PD Y+GIWGG  CR SP+QTTR C C +  C+A + +Y +L   F+Y++P    AA+ 
Sbjct:   223 MNPDPYQGIWGGSNCRDSPVQTTRKCQCTVG-CQAGDAYYNELEETFKYSLPRGKVAAMF 281

Query:    61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
             AESIQGV G  +FP+ +L+RA  L+++N GLF++DEVQTGFGRTG+++WGFE H   PDI
Sbjct:   282 AESIQGVGGTVQFPKGYLKRAAALVRANGGLFVADEVQTGFGRTGEHFWGFESHDYVPDI 341

Query:   121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
             VTMAKGI NGFP+ AVVTT EIA  L++A HFNT+GGNP+   +   VLDVI++E+LQ N
Sbjct:   342 VTMAKGIGNGFPLAAVVTTPEIAASLSQALHFNTYGGNPMASAVGIAVLDVIEEEQLQRN 401

Query:   181 CKQVSAQII 189
               +V    +
Sbjct:   402 SLEVGTYFL 410

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

ZFIN|ZDB-GENE-050913-100 agxt2 "alanine-glyoxylate aminotransferase 2" [Danio rerio (taxid:7955)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 100/189 (52%), Positives = 133/189 (70%)

Query:     1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
             M PDV+RG+WGG  CR SP+QT R CSC    C A++ + ++L   F   VP +  AA  
Sbjct:   233 MCPDVFRGLWGGSHCRDSPVQTIRECSCSPGHCYANDMYIKELKEVFDTTVP-SRIAAFF 291

Query:    61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
              E IQGV G  ++P+ +L+  Y+L++   G+ I+DEVQTGFGRTG ++WGFE H V PD+
Sbjct:   292 TEPIQGVGGAVQYPKNYLKETYQLVREKGGICIADEVQTGFGRTGSHFWGFEGHNVIPDM 351

Query:   121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
             VTMAKGIANG PMGAVVTT EIA+   K  HFNTFGGNP+ C IAS+VLD IK++++Q N
Sbjct:   352 VTMAKGIANGIPMGAVVTTAEIARSFAKGVHFNTFGGNPLACAIASSVLDTIKEDKMQEN 411

Query:   181 CKQVSAQII 189
               ++   ++
Sbjct:   412 SAELGTYLL 420

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2QZD7 AGXT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 104/190 (54%), Positives = 134/190 (70%)

Query:     1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
             M PDV+RG WGG  CR SP+QT R CSC  + C+A +++ EQ  +    +V     A   
Sbjct:   227 MCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLNSSVA-KSIAGFF 285

Query:    61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
             AE IQGV+GV ++P+ FL+ A+EL++   GL I+DEVQTGFGR G ++WGF+ HG+ PDI
Sbjct:   286 AEPIQGVNGVVQYPKGFLKEAFELVRERGGLCIADEVQTGFGRLGSHFWGFQTHGILPDI 345

Query:   121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKDEELQY 179
             VTMAKGI NGFPM AVVTT EIA  L K+  HFNTFGGNP+ C I S VL+VIK+E LQ 
Sbjct:   346 VTMAKGIGNGFPMAAVVTTPEIANSLAKSVLHFNTFGGNPIACAIGSAVLEVIKEENLQE 405

Query:   180 NCKQVSAQII 189
             N ++V   ++
Sbjct:   406 NSQEVGTYML 415

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1SND2 AGXT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 105/190 (55%), Positives = 134/190 (70%)

Query:     1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
             M PDV+RG WGG  CR SP+QTTR CSC  + C+A +++ EQ  +    +V     A   
Sbjct:   228 MCPDVFRGPWGGSHCRDSPVQTTRECSCAPDCCQAKDQYIEQFKDTLSTSVA-KSIAGFF 286

Query:    61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
             AE IQGVSGV ++P+ FL+ A+EL++   G+ I+DEVQTGFGR G ++WGF+ H V PDI
Sbjct:   287 AEPIQGVSGVVQYPKGFLKEAFELVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDI 346

Query:   121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKDEELQY 179
             VTMAKGI NGFPM AVVT+ EIA+ L K   HFNTFGGNPV C I S VL+VI+DE LQ 
Sbjct:   347 VTMAKGIGNGFPMAAVVTSPEIAESLAKCLFHFNTFGGNPVACAIGSAVLEVIQDENLQE 406

Query:   180 NCKQVSAQII 189
             N ++V   ++
Sbjct:   407 NSREVGTYLL 416

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1NQJ1 AGXT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 101/189 (53%), Positives = 131/189 (69%)

Query:     1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
             M PDV+RG WGG  CR SP+QT R CSC    C A+ ++ EQ  +    +VP T  A  I
Sbjct:   194 MLPDVFRGPWGGSNCRDSPVQTVRKCSCSEGVCHANEQYIEQFKDTLNTSVPKT-IAGFI 252

Query:    61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
             AE IQG++G  ++P+ FL+ AY L++   G+ I+DEVQTGFGRTG ++WGF+ H V PDI
Sbjct:   253 AEPIQGINGAVQYPKGFLKEAYRLVRERGGVCIADEVQTGFGRTGSHFWGFQTHDVVPDI 312

Query:   121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
             +T+AKGI NGFPM AVVTT EIA  L +  HFNTFGGNP+ CV+ S VLD I+++ LQ N
Sbjct:   313 ITLAKGIGNGFPMAAVVTTKEIANSLAQNLHFNTFGGNPMACVVGSAVLDAIEEDSLQKN 372

Query:   181 CKQVSAQII 189
              K V   ++
Sbjct:   373 SKDVGTYML 381

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

UNIPROTKB|Q9BYV1 AGXT2 "Alanine--glyoxylate aminotransferase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 102/190 (53%), Positives = 134/190 (70%)

Query:     1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
             M PDV+RG WGG  CR SP+QT R CSC  + C+A +++ EQ  +    +V     A   
Sbjct:   227 MCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVA-KSIAGFF 285

Query:    61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
             AE IQGV+GV ++P+ FL+ A+EL+++  G+ I+DEVQTGFGR G ++WGF+ H V PDI
Sbjct:   286 AEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDI 345

Query:   121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKDEELQY 179
             VTMAKGI NGFPM AV+TT EIA+ L K   HFNTFGGNP+ C I S VL+VIK+E LQ 
Sbjct:   346 VTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFGGNPMACAIGSAVLEVIKEENLQE 405

Query:   180 NCKQVSAQII 189
             N ++V   ++
Sbjct:   406 NSQEVGTYML 415

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0047305 "(R)-3-amino-2-methylpropionate-pyruvate transaminase activity" evidence=IEA

GO:0016223 "beta-alanine-pyruvate transaminase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IDA;TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046135 "pyrimidine nucleoside catabolic process" evidence=TAS

GO:0046487 "glyoxylate metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IDA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IDA

GO:0009436 "glyoxylate catabolic process" evidence=IDA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IDA

UNIPROTKB|F1MLG7 AGXT2 "Alanine--glyoxylate aminotransferase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 100/190 (52%), Positives = 133/190 (70%)

Query:     1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
             M PD++ G WGG  CR SP+QT R CSC  + C+A +++ EQ  +    +V     A   
Sbjct:   227 MCPDIFHGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVA-KSIAGFF 285

Query:    61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
             AE IQGV+GV ++P+ FL+ A+EL++   G+ I+DEVQTGFGR G ++WGF+ H V PDI
Sbjct:   286 AEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDI 345

Query:   121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKDEELQY 179
             VTMAKGI NGFPM AVVTT +IA+ LTK   HFNTFGGNP+ C + S VL+VIK+E LQ 
Sbjct:   346 VTMAKGIGNGFPMAAVVTTPDIAKSLTKRMLHFNTFGGNPMACAVGSAVLEVIKEENLQE 405

Query:   180 NCKQVSAQII 189
             N ++V   ++
Sbjct:   406 NSQEVGTYML 415

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q17QF0 AGXT2 "Alanine--glyoxylate aminotransferase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 100/190 (52%), Positives = 133/190 (70%)

Query:     1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
             M PD++ G WGG  CR SP+QT R CSC  + C+A +++ EQ  +    +V     A   
Sbjct:   227 MCPDIFHGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVA-KSIAGFF 285

Query:    61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
             AE IQGV+GV ++P+ FL+ A+EL++   G+ I+DEVQTGFGR G ++WGF+ H V PDI
Sbjct:   286 AEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDI 345

Query:   121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKDEELQY 179
             VTMAKGI NGFPM AVVTT +IA+ LTK   HFNTFGGNP+ C + S VL+VIK+E LQ 
Sbjct:   346 VTMAKGIGNGFPMAAVVTTPDIAKSLTKRMLHFNTFGGNPMACAVGSAVLEVIKEENLQE 405

Query:   180 NCKQVSAQII 189
             N ++V   ++
Sbjct:   406 NSQEVGTYML 415

GO:0005739 "mitochondrion" evidence=IEA

GO:0047305 "(R)-3-amino-2-methylpropionate-pyruvate transaminase activity" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

MGI|MGI:2146052 Agxt2 "alanine-glyoxylate aminotransferase 2" [Mus musculus (taxid:10090)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 101/190 (53%), Positives = 132/190 (69%)

Query:     1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
             M PDV+RG WGG  CR SP+QT R CSC  + C+A  ++ EQ  +    +V  T  A   
Sbjct:   226 MCPDVFRGPWGGIHCRDSPVQTVRDCSCAPDCCQAKERYIEQFKDTLNTSVA-TSIAGFF 284

Query:    61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
             AE IQGV+GV ++P+ FL+ A+ L++   G+ I+DEVQTGFGR G ++WGF+ H V PDI
Sbjct:   285 AEPIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDI 344

Query:   121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKDEELQY 179
             VTMAKGI NGFPM AVVTT EIA+ L K   HF+TFGGNP+ C I S VL+VI++E LQ 
Sbjct:   345 VTMAKGIGNGFPMAAVVTTPEIAKSLAKRLLHFSTFGGNPLACAIGSAVLEVIEEENLQR 404

Query:   180 NCKQVSAQII 189
             N ++V   ++
Sbjct:   405 NSQEVGTYML 414

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISO

GO:0008483 "transaminase activity" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=ISO

GO:0019481 "L-alanine catabolic process, by transamination" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=ISO

GO:0047305 "(R)-3-amino-2-methylpropionate-pyruvate transaminase activity" evidence=IEA

RGD|621767 Agxt2 "alanine-glyoxylate aminotransferase 2" [Rattus norvegicus (taxid:10116)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 99/190 (52%), Positives = 130/190 (68%)

Query:     1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
             M PDV+RG WGG  CR SP+QT R CSC  + C+A  ++ EQ  +    +V  T  A   
Sbjct:   225 MCPDVFRGPWGGSHCRDSPVQTVRKCSCAPDGCQAKERYIEQFKDTLNTSVA-TSIAGFF 283

Query:    61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
             AE IQGV+GV ++P+ FL+ A+ L++   G+ I+DEVQTGFGR G ++WGF+ H   PDI
Sbjct:   284 AEPIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTHDTMPDI 343

Query:   121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAH-FNTFGGNPVGCVIASTVLDVIKDEELQY 179
             VTMAKGI NGFPM AVVTT EIA  L K  H F+TFGG+P+ C I S VL+VI++E LQ 
Sbjct:   344 VTMAKGIGNGFPMAAVVTTPEIASSLAKHLHHFSTFGGSPLACAIGSAVLEVIEEENLQR 403

Query:   180 NCKQVSAQII 189
             N ++V   ++
Sbjct:   404 NSQEVGTYML 413

GO:0005739 "mitochondrion" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA;ISO

GO:0008483 "transaminase activity" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA;ISO

GO:0016223 "beta-alanine-pyruvate transaminase activity" evidence=EXP

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA;ISO

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA;ISO

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA;ISO

GO:0047305 "(R)-3-amino-2-methylpropionate-pyruvate transaminase activity" evidence=EXP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3UEG6	AGT2_MOUSE	2, ., 6, ., 1, ., 4, 0	0.5315	0.9641	0.3664	yes	N/A
Q5RFA3	AGT2_PONAB	2, ., 6, ., 1, ., 4, 0	0.5368	0.9641	0.3657	yes	N/A
Q64565	AGT2_RAT	2, ., 6, ., 1, ., 4, 0	0.5210	0.9641	0.3671	yes	N/A
Q9BYV1	AGT2_HUMAN	2, ., 6, ., 1, ., 4, 0	0.5368	0.9641	0.3657	yes	N/A
Q17QF0	AGT2_BOVIN	2, ., 6, ., 1, ., 4, 0	0.5263	0.9641	0.3657	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	195
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	2e-55
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	5e-53
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	3e-51
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	2e-47
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	4e-47
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	8e-44
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	1e-43
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	5e-42
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	4e-40
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	3e-38
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	7e-38
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	1e-37
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	3e-37
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	5e-37
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	2e-35
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	7e-34
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	1e-32
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	1e-31
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	5e-31
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	6e-31
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	3e-30
PRK04073	396	PRK04073, rocD, ornithine--oxo-acid transaminase;	1e-29
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	1e-28
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	1e-28
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	6e-27
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	1e-26
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	2e-26
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	3e-26
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	4e-26
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	9e-26
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	3e-25
PRK09221	445	PRK09221, PRK09221, beta alanine--pyruvate transam	1e-24
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	1e-24
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	1e-24
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	1e-24
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	4e-24
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	9e-24
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	1e-23
PRK04013	364	PRK04013, argD, acetylornithine/acetyl-lysine amin	2e-23
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	3e-23
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	1e-22
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	1e-22
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	2e-22
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	2e-22
PLN02624	474	PLN02624, PLN02624, ornithine-delta-aminotransfera	6e-22
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	6e-22
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	2e-21
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	2e-21
PRK06173	429	PRK06173, PRK06173, adenosylmethionine--8-amino-7-	2e-21
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	3e-21
PLN02760	504	PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans	1e-20
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	3e-20
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	1e-19
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	2e-19
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	2e-18
PRK07986	428	PRK07986, PRK07986, adenosylmethionine--8-amino-7-	3e-18
PRK05630	422	PRK05630, PRK05630, adenosylmethionine--8-amino-7-	4e-18
PRK07482	461	PRK07482, PRK07482, hypothetical protein; Provisio	7e-18
PRK06541	460	PRK06541, PRK06541, hypothetical protein; Provisio	1e-17
PRK08742	472	PRK08742, PRK08742, adenosylmethionine--8-amino-7-	1e-17
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	2e-17
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	3e-17
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	3e-17
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	5e-17
PRK12403	460	PRK12403, PRK12403, putative aminotransferase; Pro	1e-16
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	1e-16
PRK07030	466	PRK07030, PRK07030, adenosylmethionine--8-amino-7-	3e-16
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	4e-16
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	1e-15
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	1e-15
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	4e-15
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	7e-15
TIGR00713	423	TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin	1e-13
PRK00062	426	PRK00062, PRK00062, glutamate-1-semialdehyde amino	4e-10
PLN02482	474	PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a	9e-10
PRK06943	453	PRK06943, PRK06943, adenosylmethionine--8-amino-7-	2e-09
PRK12389	428	PRK12389, PRK12389, glutamate-1-semialdehyde amino	6e-07
PRK06209	431	PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a	4e-06
PLN02974	817	PLN02974, PLN02974, adenosylmethionine-8-amino-7-o	1e-04
PRK07046	453	PRK07046, PRK07046, aminotransferase; Validated	0.002

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score =  181 bits (462), Expect = 2e-55
 Identities = 61/137 (44%), Positives = 78/137 (56%), Gaps = 2/137 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E IQG  G+   P+ FL+   +L + +  L I+DEVQTGFGRTG   + FE  GV
Sbjct: 224 AAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK-MFAFEHFGV 282

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PDIVT+AK +  G P+ AVV   EI        H  TFGGNPV C  A  VLDVI++E 
Sbjct: 283 EPDIVTLAKSLGGGLPLSAVVGRAEIMDWPPG-GHGGTFGGNPVACAAALAVLDVIEEEN 341

Query: 177 LQYNCKQVSAQIIGYLR 193
           L     ++   +   L 
Sbjct: 342 LLERAAELGEYLRDRLE 358

Length = 447

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score =  173 bits (442), Expect = 5e-53
 Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 3/135 (2%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E IQG  GV   P  +L+   EL + +  L I+DEVQTGFGRTG   + FE  GV
Sbjct: 193 AAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK-MFAFEHFGV 251

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD 174
            PDIVT+ KG+  G P+GAV+   EI          H  TFGGNP+ C  A  VL+V+++
Sbjct: 252 EPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE 311

Query: 175 EELQYNCKQVSAQII 189
           E L  N  ++   + 
Sbjct: 312 EGLLENAAELGEYLR 326

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score =  176 bits (448), Expect = 3e-51
 Identities = 72/141 (51%), Positives = 90/141 (63%), Gaps = 1/141 (0%)

Query: 54  TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM 113
            G A  IAESI  V+G    P  +LR  Y ++++  G+ I+DEVQ GFGR G ++W FE 
Sbjct: 783 RGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFET 842

Query: 114 HGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKA-AHFNTFGGNPVGCVIASTVLDVI 172
            GV PDIVTM K I NG PMGAVVTT EIA        +FNTFGGNPV C I   VLD+I
Sbjct: 843 QGVVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDII 902

Query: 173 KDEELQYNCKQVSAQIIGYLR 193
           +DE+LQ N  ++   ++  LR
Sbjct: 903 EDEDLQRNALEIGNYLLAGLR 923

Length = 1013

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score =  159 bits (405), Expect = 2e-47
 Identities = 62/137 (45%), Positives = 84/137 (61%), Gaps = 1/137 (0%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E IQG  GV   P  FL+   EL   +  L I DEVQTG GRTG   + +E +GV
Sbjct: 186 AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK-LFAYEHYGV 244

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PDI+T+AK +  GFP+GA++ T EIA   T   H +TFGGNP+ C +A  VL+V+ +E 
Sbjct: 245 EPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEG 304

Query: 177 LQYNCKQVSAQIIGYLR 193
           L  N ++    ++  LR
Sbjct: 305 LLENVREKGEYLLQRLR 321

Length = 404

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score =  158 bits (402), Expect = 4e-47
 Identities = 66/167 (39%), Positives = 94/167 (56%), Gaps = 13/167 (7%)

Query: 38  KFYEQLVNAFQYNVP----------ITGA-AALIAESIQGVSGVKEFPRYFLRRAYELIK 86
           + +E LV  F Y VP          IT   AA++ E IQG  GV    + +L+   EL  
Sbjct: 155 EGFEPLVEGFIY-VPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCD 213

Query: 87  SNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVL 146
            N  L I DEVQTG GRTG   + ++ +G+ PDI+T+AKG+  G P+GAV+   ++A V 
Sbjct: 214 ENGILLILDEVQTGMGRTG-KLFAYQHYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVF 272

Query: 147 TKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
           T   H +TFGGNP+ C  A  V+++I++E L  N  +V   +   LR
Sbjct: 273 TPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLR 319

Length = 396

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score =  148 bits (375), Expect = 8e-44
 Identities = 67/138 (48%), Positives = 83/138 (60%), Gaps = 7/138 (5%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E IQG  GV   P  FL    E+ K +  L I+DEVQTGFGRTG   +  E +GV
Sbjct: 179 AAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGK-LFACEHYGV 237

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
           +PDI+T+AK +  G P+ AV+ T EI Q     +H  TFGGNP+ C  A  VLD+I+DE 
Sbjct: 238 TPDIMTLAKALTGGLPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDEN 297

Query: 177 LQYNCKQVSAQIIG-YLR 193
           L  N     AQ  G YLR
Sbjct: 298 LLQN-----AQEKGDYLR 310

Length = 338

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score =  154 bits (392), Expect = 1e-43
 Identities = 61/140 (43%), Positives = 89/140 (63%), Gaps = 1/140 (0%)

Query: 55  GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
           G A  I E + G +G    P  +L++ Y  +++  G+ I+DEVQ G+GR G  +WGFE  
Sbjct: 744 GLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQ 803

Query: 115 GVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH-FNTFGGNPVGCVIASTVLDVIK 173
           GV PDI+TMAKG+ NG P+GAV+T  EIA+ L    + F++ GG+PV C I   VLDV++
Sbjct: 804 GVVPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLR 863

Query: 174 DEELQYNCKQVSAQIIGYLR 193
           +E+LQ N ++V   +   L 
Sbjct: 864 EEKLQENARRVGDHLKARLE 883

Length = 972

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score =  144 bits (366), Expect = 5e-42
 Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 1/137 (0%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E IQG  GV      FL+   E+ K  + L I DEVQTG GRTG  ++ +E +G+
Sbjct: 172 AAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAYEHYGI 230

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PDI+T+AKG+  G P+GA +   E+A+  T   H +TFGGNP+ C  A  VL+VI+ E 
Sbjct: 231 EPDIITLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKER 290

Query: 177 LQYNCKQVSAQIIGYLR 193
           L  N K+        L 
Sbjct: 291 LLENVKEKGDYFKERLE 307

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score =  140 bits (354), Expect = 4e-40
 Identities = 57/132 (43%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+  E IQG +GV   P  +L  A E+   +  L + DEVQTG GRTG  ++  +  GV
Sbjct: 185 AAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA-WFAHQHDGV 243

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
           +PD+VT+AKG+  G P+GA +     A +LT   H +TFGGNPV C  A  VLD I  E 
Sbjct: 244 TPDVVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEG 303

Query: 177 LQYNCKQVSAQI 188
           L  N +++  Q+
Sbjct: 304 LLENAERLGEQL 315

Length = 398

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score =  135 bits (343), Expect = 3e-38
 Identities = 68/191 (35%), Positives = 90/191 (47%), Gaps = 19/191 (9%)

Query: 3   PDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAE 62
           P+ YR  WG                 P     A   F E  +  F+  VP    AA+I E
Sbjct: 185 PNPYRNPWGI--------------ENPEECGNAVLDFIEDYL--FKKLVPPEEVAAIIVE 228

Query: 63  SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVT 122
            IQG  G    P+ F +   +L      L I DEVQTG GRTG   +  E  GV PDI+T
Sbjct: 229 PIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTG-KMFAIEHFGVEPDIIT 287

Query: 123 MAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182
           +AK IA G P+GAV+   E+   L   +H NTFGGNPV    A   L+ ++ E L  N +
Sbjct: 288 LAKAIAGGLPLGAVIGRAELM-FLPPGSHANTFGGNPVAAAAALATLEELE-EGLLENAQ 345

Query: 183 QVSAQIIGYLR 193
           ++   +   L+
Sbjct: 346 KLGEYLRKELK 356

Length = 441

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score =  134 bits (339), Expect = 7e-38
 Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 5/137 (3%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA++ E IQG  G++  P  FL+   +L   N  L I DEVQ G GRTG   +  E  GV
Sbjct: 177 AAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK-LFAHEWAGV 235

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
           +PDI+ +AKGI  GFP+GA + T E A+ +T   H +T+GGNP+   + + VLDVI    
Sbjct: 236 TPDIMAVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPG 295

Query: 177 LQYNCKQVSAQIIGYLR 193
              N +++      YL+
Sbjct: 296 FLDNVQRMG----LYLK 308

Length = 389

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score =  134 bits (339), Expect = 1e-37
 Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 12/191 (6%)

Query: 14  RCRYSPIQTTRYCS-------CPLNQCE---ASNKFYEQLVNAFQYNVPITGAAALIAES 63
           R  Y P+  + Y +       CP  +             L + F++ V     AA+I E 
Sbjct: 157 RKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECL-RDLESLFKHQVTPEEVAAVIIEP 215

Query: 64  IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM 123
           + G  G    P+ FL++  E+   +  L I DEVQTGFGRTG+ +   +  GV PDI+T+
Sbjct: 216 VLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAA-QTFGVVPDIMTI 274

Query: 124 AKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQ 183
           AKGIA+G P+ AVV + E+ +     +H  TFGGNPV C  A   L+VIK+E+L  N  +
Sbjct: 275 AKGIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANE 334

Query: 184 VSAQIIGYLRV 194
           + A  +  L V
Sbjct: 335 MGAYALERLEV 345

Length = 433

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score =  132 bits (334), Expect = 3e-37
 Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 1/135 (0%)

Query: 58  ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
           A+I E IQG  GV      FL+   EL   +N L I DEVQTG GRTG+ Y  +  +GV+
Sbjct: 182 AVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVT 240

Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
           PDI+T AK +  GFP+GA++TTTEIA  L    H  T+GGNP+ C +A  VLD++   EL
Sbjct: 241 PDILTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPEL 300

Query: 178 QYNCKQVSAQIIGYL 192
               KQ     +  L
Sbjct: 301 LAGVKQRHDLFVDGL 315

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score =  131 bits (333), Expect = 5e-37
 Identities = 57/135 (42%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 58  ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
           A++ E IQG  GV      FL+   EL   +N L I DEVQTG GRTGD +  +  +GV+
Sbjct: 187 AVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF-AYMHYGVT 245

Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
           PDI+T AK +  GFP+GA++TT EIA       H +T+GGNP+ C +A  V D+I   E+
Sbjct: 246 PDILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEV 305

Query: 178 QYNCKQVSAQIIGYL 192
               K    + +  L
Sbjct: 306 LEGVKARRQRFVDGL 320

Length = 403

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score =  128 bits (324), Expect = 2e-35
 Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 8/144 (5%)

Query: 57  AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AA I E +  G  G+   P  +L+R  E+      L I+DEV TGFGRTG   +  E  G
Sbjct: 216 AAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTG-KMFACEHAG 274

Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTVL 169
           + PDI+ +AKG+  G+ P+ AV+T+  I +  +        H +T+ GNP+ C  A   L
Sbjct: 275 IVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANL 334

Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
           D++++E+L     ++ A +   L+
Sbjct: 335 DILEEEDLLERVAEIGAYLQAGLQ 358

Length = 449

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score =  124 bits (313), Expect = 7e-34
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 3/168 (1%)

Query: 28  CPLNQCEASNKFY--EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELI 85
           CP  +   S K    E +   F+  V   G AAL AE IQG +G+   P  + ++  +++
Sbjct: 175 CPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKIL 234

Query: 86  KSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQV 145
             +  L + DEVQ+G GRTG  ++  E  GV PDI+T+ K +  G P+ A +   EI   
Sbjct: 235 DEHGILLVVDEVQSGLGRTG-KWFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDS 293

Query: 146 LTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
           L   AH  T  GNPV    A  V++ I+++ L    +++       L 
Sbjct: 294 LPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLE 341

Length = 443

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score =  120 bits (303), Expect = 1e-32
 Identities = 56/132 (42%), Positives = 79/132 (59%), Gaps = 1/132 (0%)

Query: 58  ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
           A+I E IQG  GV    + FL+   EL   +N L I DEVQTG GRTG+ Y  +  +GV+
Sbjct: 186 AVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVT 244

Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
           PD++T AK +  GFP+GA++TT + A V+T   H  T+GGNP+   +A  VL++I   E+
Sbjct: 245 PDVLTTAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEM 304

Query: 178 QYNCKQVSAQII 189
               KQ     +
Sbjct: 305 LNGVKQRHDWFV 316

Length = 406

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score =  118 bits (297), Expect = 1e-31
 Identities = 58/146 (39%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 43  LVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG 102
           L   F+ +V     AA+I E +QG  G    P  F++   EL   +  L I+DEVQTGF 
Sbjct: 186 LDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFA 245

Query: 103 RTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGC 162
           RTG   +  E H V+ D+ TMAKG+A GFP+ AV    EI           T+GGNP+G 
Sbjct: 246 RTG-KLFAMEHHEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGI 304

Query: 163 VIASTVLDVIKDEELQYNCKQVSAQI 188
             A  VLDVI++E+L     Q+  ++
Sbjct: 305 AAAHAVLDVIEEEDLCERANQLGNRL 330

Length = 425

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score =  115 bits (291), Expect = 5e-31
 Identities = 52/121 (42%), Positives = 68/121 (56%), Gaps = 1/121 (0%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA++ E +QG  GV      FL+    L K    L I DEVQTG GRTG  +  +E  G+
Sbjct: 169 AAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF-AYEQFGL 227

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PDIVT+AKG+ NG P+GA++   E+       +H +TFGGNP+    A  VL VIK   
Sbjct: 228 DPDIVTVAKGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPS 287

Query: 177 L 177
            
Sbjct: 288 F 288

Length = 377

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score =  115 bits (291), Expect = 6e-31
 Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 2/138 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA I E IQG +GV      +L++ YEL K  N L I DE+QTG GRTG      +  GV
Sbjct: 180 AAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG-KLLAHDHEGV 238

Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
            PDIV + K ++ G  P+ AV+   ++  V+    H +T+GGNP+ C +A   L+V+K+E
Sbjct: 239 KPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEE 298

Query: 176 ELQYNCKQVSAQIIGYLR 193
           +L  N +++       L+
Sbjct: 299 KLAENAQRLGEVFRDGLK 316

Length = 400

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score =  114 bits (288), Expect = 3e-30
 Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 19/175 (10%)

Query: 3   PDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAE 62
           PD YRG++                           ++   L   F+  +P    A ++ E
Sbjct: 173 PDKYRGMYEE------------------PDANFVEEYLAPLKEMFEKYLPADEVACIVIE 214

Query: 63  SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVT 122
           +IQG  G+ E    +    Y+  + +  LF  D++Q G GRTG  +       ++PD+++
Sbjct: 215 TIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTG-KWSSISHFNITPDLMS 273

Query: 123 MAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
             K +A G PM A+V   EI + L   AH  T G NPV C  A   +D+I+DE L
Sbjct: 274 FGKSLAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESL 328

Length = 445

>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional

 Score =  112 bits (282), Expect = 1e-29
 Identities = 50/122 (40%), Positives = 74/122 (60%), Gaps = 2/122 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA + E IQG +G+   P  FL+ A EL K  N LFI+DE+QTG GRTG   +  +   V
Sbjct: 188 AAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTG-KLFACDWDNV 246

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
           +PD+  + K +  G FP+  V    +I  V T  +H +TFGGNP+ C ++   L+V+++E
Sbjct: 247 TPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEE 306

Query: 176 EL 177
           +L
Sbjct: 307 KL 308

Length = 396

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score =  109 bits (276), Expect = 1e-28
 Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 9/139 (6%)

Query: 57  AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AA I E + QG  G++ +P  +LR+  EL      L I+DE+ TGFGRTG   +  E  G
Sbjct: 197 AAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGRTG-KLFACEHAG 255

Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQV-----LTKA-AHFNTFGGNPVGCVIASTV 168
           V+PDI+ ++KG+  G+ P+ A +TT EI +        KA  H +T+ GNP+ C  A   
Sbjct: 256 VTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGKAFMHGHTYTGNPLACAAALAS 315

Query: 169 LDVIKDEELQYNCKQVSAQ 187
           LD++++E+      ++ AQ
Sbjct: 316 LDLLEEEDWLEQVARIEAQ 334

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score =  109 bits (275), Expect = 1e-28
 Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
            A I E IQG +GV      +L++  EL   +N L I+DE+QTG GRTG      +   V
Sbjct: 188 CAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG-KLLCVDHENV 246

Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
            PDIV + K ++ G  P+ AV+   ++   +    H +T+GGNP+ C +A   L+V+++E
Sbjct: 247 KPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEE 306

Query: 176 EL 177
           +L
Sbjct: 307 KL 308

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score =  104 bits (262), Expect = 6e-27
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+  E +QG  G+    + FL+    L      L + DEVQ G GRTG   W  E +GV
Sbjct: 169 AAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG-YLWAHEAYGV 227

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PDI+T+AK +A G P+GAV+ T ++A  +    H +TF G P+ C  A  VLD I    
Sbjct: 228 EPDIMTLAKPLAGGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPG 287

Length = 382

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score =  104 bits (260), Expect = 1e-26
 Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 1/121 (0%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA++ E +QG SGV    + F++   +  +    L I DEVQTG GRTG  Y  FE +G+
Sbjct: 167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLY-AFEHYGI 225

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PDI T+AKG+ANG P+GA++  + +       +H +TFGGN +    AS  LD++    
Sbjct: 226 EPDIFTLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAG 285

Query: 177 L 177
            
Sbjct: 286 F 286

Length = 375

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score =  104 bits (260), Expect = 2e-26
 Identities = 52/142 (36%), Positives = 71/142 (50%), Gaps = 4/142 (2%)

Query: 55  GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
             AA+I E IQG  GV   P  +L    +L      L I DEVQTG GRTG   +  E  
Sbjct: 231 DVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTG-KMFACEHE 289

Query: 115 GVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDV 171
            V PDI+ +AK +  G  P+GA + T E+  VL      H  TFGGNP+ C  A   ++V
Sbjct: 290 NVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINV 349

Query: 172 IKDEELQYNCKQVSAQIIGYLR 193
           + ++ L    +Q    ++   R
Sbjct: 350 LLEQNLPAQAEQKGDYLLDGFR 371

Length = 459

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score =  103 bits (259), Expect = 3e-26
 Identities = 55/145 (37%), Positives = 76/145 (52%), Gaps = 9/145 (6%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA IAE +QG  GV   P  F     E+   +  L I+DEV TGFGRTG +++G    GV
Sbjct: 215 AAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG-SWFGSRGWGV 273

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTV 168
            PDI+ +AKGI +G  P+GA +    IA      A       H  T+ G+PV C  A   
Sbjct: 274 KPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALAT 333

Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
           LD++  E+L  N  +  A ++  L+
Sbjct: 334 LDIVVREDLPANAAKRGAYLLEGLQ 358

Length = 449

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score =  103 bits (258), Expect = 4e-26
 Identities = 56/141 (39%), Positives = 76/141 (53%), Gaps = 9/141 (6%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E IQG  G       FL    E  + N  +FI+DEVQTGF RTG  ++  E  G+
Sbjct: 221 AAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGA-WFACEHEGI 279

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFN----TFGGNPVGCVIASTVLDVI 172
            PD++T AKGIA G P+ AV    EI      A H      T+GGNPV C  A   ++ I
Sbjct: 280 VPDLITTAKGIAGGLPLSAVTGRAEIMD----APHPGGLGGTYGGNPVACAAALAAIETI 335

Query: 173 KDEELQYNCKQVSAQIIGYLR 193
           ++++L    +Q+ A +   LR
Sbjct: 336 EEDDLVARARQIEALMTDRLR 356

Length = 443

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score =  102 bits (256), Expect = 9e-26
 Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 6/126 (4%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA I E IQG  GV   P  +      + +  + L ++DEV  GFGRTG  ++G +  G+
Sbjct: 221 AAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG-EWFGSQHFGI 279

Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVL-TKAAHFN---TFGGNPVGCVIASTVLDV 171
            PD++T+AKG+ +G+ PMGAV     +A+VL  +   FN   T+ G+PV   +A   L +
Sbjct: 280 KPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRI 339

Query: 172 IKDEEL 177
           ++DE +
Sbjct: 340 LRDEGI 345

Length = 456

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score =  100 bits (252), Expect = 3e-25
 Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 11/157 (7%)

Query: 39  FYEQLVNAFQYNVPITGA---AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISD 95
           F + LV+ F+  +   GA   AA IAE I G  GV   P  +  R  E+ +  + L+ISD
Sbjct: 201 FCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISD 260

Query: 96  EVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLT----KAA 150
           EV TGFGR G  +    + G+ PDI+T AKG+ +G  P+GAV+ +  +  V++    K  
Sbjct: 261 EVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGN 320

Query: 151 HFN---TFGGNPVGCVIASTVLDVIKDEELQYNCKQV 184
            F    T+ G+PV C  A   +++++ E L  + ++V
Sbjct: 321 VFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREV 357

Length = 466

>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional

 Score = 99.2 bits (248), Expect = 1e-24
 Identities = 56/159 (35%), Positives = 77/159 (48%), Gaps = 27/159 (16%)

Query: 45  NAFQYNVPITGA------------------AALIAESIQGVSGVKEFPRYFLRRAYELIK 86
           NAF    P  GA                  AA+I E + G +GV   P+ +L+R  E+  
Sbjct: 190 NAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICD 249

Query: 87  SNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQV 145
            +  L I DEV TGFGR G  +   E  GV+PDI+T AKG+ NG  PMGAV+ + EI   
Sbjct: 250 KHGILLIFDEVITGFGRLGAAF-AAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDA 308

Query: 146 LTKAA-------HFNTFGGNPVGCVIASTVLDVIKDEEL 177
             +         H  T+  +PV C      LD+ ++E+L
Sbjct: 309 FMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDL 347

Length = 445

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score = 98.8 bits (246), Expect = 1e-24
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 1/132 (0%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AAL+ E +QG  G     + F+    +  + +  +FI+DEVQTGF RTG   +  E  G 
Sbjct: 199 AALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG-AMFACEHEGP 257

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PD++T AK +A+G P+  V    EI           T+ GNP+ C  A  VL +I+ E 
Sbjct: 258 EPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEG 317

Query: 177 LQYNCKQVSAQI 188
           L    +Q+   +
Sbjct: 318 LIERARQIGRLV 329

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score = 98.7 bits (246), Expect = 1e-24
 Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 1/139 (0%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E +QG  G       F++R   L   +  + I+DEVQTG GRTG   +  E  GV
Sbjct: 201 AAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG-TLFAMEQMGV 259

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
           + D+ T AK IA GFP+  V    E+   +       T+ GNP+ C  A  VL V + E 
Sbjct: 260 AADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQEN 319

Query: 177 LQYNCKQVSAQIIGYLRVV 195
           L      +  ++   L  +
Sbjct: 320 LLQKANALGEKLKDGLLAI 338

Length = 425

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score = 98.7 bits (246), Expect = 1e-24
 Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 58  ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
           A + E IQG +GV   P  +  R  EL  +NN   I DE+QTG GRTG      E  G+ 
Sbjct: 190 AFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTG-KLLAEEHEGIE 248

Query: 118 PDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            D+  + K ++ GF P+ AV++ +E+  VL    H +TFGGNP+ C +A   L V+ +E 
Sbjct: 249 ADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEG 308

Query: 177 LQYNCKQVSAQIIGYLR 193
           +  N  ++ A  +  LR
Sbjct: 309 MIENAAEMGAYFLEGLR 325

Length = 401

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 97.6 bits (244), Expect = 4e-24
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 9/140 (6%)

Query: 57  AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AA I E  +QG  G+  +   +L     +   +  L I DE+ TGFGRTG  +   E  G
Sbjct: 201 AAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLF-ACEQAG 259

Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVL-----TKA-AHFNTFGGNPVGCVIASTV 168
           VSPDI+ ++KG+  G+ P+ A + T EI +        KA  H  ++  NP+ C  A+  
Sbjct: 260 VSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANAS 319

Query: 169 LDVIKDEELQYNCKQVSAQI 188
           LD+ +DE +      +SA +
Sbjct: 320 LDLFEDEPVLERVAALSAGL 339

Length = 423

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score = 96.6 bits (240), Expect = 9e-24
 Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 16/162 (9%)

Query: 40  YEQLVNAFQY----NVP------ITG-AAALIAESIQGVSGVKEFPRYFLRRAYELIKSN 88
           YE L   F+Y    +V         G  AA++ E IQG  GV      FL R   L   +
Sbjct: 161 YEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQH 220

Query: 89  NGLFISDEVQTGFGRTGD--NYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVL 146
           + L + DE+Q G GRTG    +W  +   V+PDIVT+AK +  GFP+GA++   ++A+ +
Sbjct: 221 DALLVLDEIQCGMGRTGTLFAHWQEQ---VTPDIVTLAKALGGGFPIGAMLAGPKVAETM 277

Query: 147 TKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
              AH  TFGGNP+   +A   L  +   ++  N  + SA +
Sbjct: 278 QFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAAL 319

Length = 408

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score = 96.6 bits (241), Expect = 1e-23
 Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 8/144 (5%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E I    GV   P+ +++   E+ + +  L ISDEV  GFGRTG  + GF  +GV
Sbjct: 215 AAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAF-GFMNYGV 273

Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA------HFNTFGGNPVGCVIASTVL 169
            PDI+TMAKGI + + P+ A     EI +            H NTFGGNP  C +A   L
Sbjct: 274 KPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNL 333

Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
           +++++E L     Q+   ++  L+
Sbjct: 334 EIMENENLIERSAQLGELLLEQLK 357

Length = 451

>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional

 Score = 95.4 bits (237), Expect = 2e-23
 Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 6/121 (4%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E IQG  G+      F++   +L +    L I+DEVQ+G  RTG  +   E + V
Sbjct: 164 AAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTG-KFLAIEHYKV 221

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PDIVTM KGI NG P+   +T  ++     +  H +TFGGNP+ C   +  L +++ E 
Sbjct: 222 EPDIVTMGKGIGNGVPVSLTLTNFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRER 277

Query: 177 L 177
           L
Sbjct: 278 L 278

Length = 364

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score = 95.6 bits (238), Expect = 3e-23
 Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 9/129 (6%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E + G +GV   P+ +L+R  E+   +  L I DEV TGFGR G  +   +  GV
Sbjct: 217 AAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPF-AAQYFGV 275

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEI-------AQVLTKAAHFNTFGGNPVGCVIASTV 168
           +PD++T AKG+ NG  PMGAV  ++EI        +   +  H  T+ G+P+ C  A   
Sbjct: 276 TPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALAT 335

Query: 169 LDVIKDEEL 177
           LD+ + E L
Sbjct: 336 LDLYEREGL 344

Length = 442

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score = 93.7 bits (233), Expect = 1e-22
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 1/152 (0%)

Query: 41  EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG 100
           E+  N F   V     AA++ E +QG  G     + F++    +   +  LF++DE+QTG
Sbjct: 205 EEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTG 264

Query: 101 FGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPV 160
           F RTG  Y+  E   V PD++T++K +  G P+  V+   EI           T+ G+P+
Sbjct: 265 FARTG-KYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAPGELGGTYAGSPL 323

Query: 161 GCVIASTVLDVIKDEELQYNCKQVSAQIIGYL 192
           GC  A  VLD+I+ E L     ++   ++   
Sbjct: 324 GCAAALAVLDIIEKENLNDRAIELGKVVMNRF 355

Length = 451

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score = 93.3 bits (232), Expect = 1e-22
 Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 1/146 (0%)

Query: 47  FQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD 106
           F+ ++     AA++ E IQG  G    P  F+     L   +  L I+DEVQTGF RTG 
Sbjct: 190 FKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTG- 248

Query: 107 NYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIAS 166
             +  E + V PD++TMAK +  G P+ AVV   E+           T+ GNP+    A 
Sbjct: 249 KLFAMEYYDVKPDLITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAAL 308

Query: 167 TVLDVIKDEELQYNCKQVSAQIIGYL 192
            VLDVI +E+L      + A ++  L
Sbjct: 309 AVLDVIAEEKLCQRALILGAHLVEVL 334

Length = 421

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 93.3 bits (232), Expect = 2e-22
 Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 9/161 (5%)

Query: 28  CPLN-----QCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAY 82
           CPL        +A   ++E  +   +  V     AA+I E+IQG  GV   P  +L++  
Sbjct: 195 CPLGIGGEAGVKALTYYFENFIEDVESGV--RKPAAVILEAIQGEGGVNPAPVEWLQKIR 252

Query: 83  ELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEI 142
           E+ + +  L I DEVQ GF RTG   + FE  G+ PDI+ M+K +  G P+ AV+   + 
Sbjct: 253 EVTQKHGILLIVDEVQAGFARTGK-MFAFEHAGIEPDIIVMSKAVGGGLPL-AVLGIKKE 310

Query: 143 AQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQ 183
                   H  TF GN +      T L ++K+E L  N  +
Sbjct: 311 FDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAE 351

Length = 459

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score = 93.1 bits (231), Expect = 2e-22
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 5/169 (2%)

Query: 28  CPLN-QCEASNKFYEQLVNAFQYNVP--ITGAAALIAESIQGVSGVKEFPRYFLRRAYEL 84
           CP     EA +    +    F  +V   +   AA+I E+IQG  GV   P  +L++  E+
Sbjct: 176 CPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREV 235

Query: 85  IKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQ 144
            + ++   I DEVQ GFGR+G   + FE  G+ PD V M+K +  G P+ AV+       
Sbjct: 236 TRKHDIKLILDEVQAGFGRSG-TMFAFEHAGIEPDFVVMSKAVGGGLPL-AVLLIAPEFD 293

Query: 145 VLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
               A H  TF GN +  V  +  L+  KD+ L  N ++   +I  +L 
Sbjct: 294 AWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLD 342

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase

 Score = 91.8 bits (228), Expect = 6e-22
 Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA + E IQG +GV   P  +L+   EL   +N L I+DE+QTG  RTG      +   V
Sbjct: 226 AAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTG-KMLACDWEEV 284

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
            PD+V + K +  G  P+ AV+   ++   +    H +TFGGNP+   +A   L V++DE
Sbjct: 285 RPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDE 344

Query: 176 EL 177
           +L
Sbjct: 345 KL 346

Length = 474

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 91.7 bits (228), Expect = 6e-22
 Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 10/130 (7%)

Query: 57  AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AA+I E  +QG  G+   P+ +L+    L    N LFI+DEV TGFGRTG  +   E   
Sbjct: 225 AAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF-ACEHEN 283

Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQV-------LTKAAHFNTFGGNPVGCVIAST 167
           V+PDI+T  KG+  G+ P+   VTT EI               H +++ GNP+GC +A  
Sbjct: 284 VTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALA 343

Query: 168 VLDVIKDEEL 177
            L++ +   L
Sbjct: 344 NLELYEKTNL 353

Length = 460

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score = 90.4 bits (224), Expect = 2e-21
 Identities = 62/192 (32%), Positives = 89/192 (46%), Gaps = 17/192 (8%)

Query: 2   HPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVN-AFQYNVPITGAAALI 60
           +P+ YR  WG     Y                E  N+F + L N  F + VP    AAL 
Sbjct: 182 YPNPYRNPWGING--YEEPD------------ELINRFLDYLENYVFSHVVPPDEVAALF 227

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
           AE IQG +G+   P  F +   +L+  +  L + DEVQTG GRTG  ++  E   V PD+
Sbjct: 228 AEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTG-KWFASEWFEVKPDL 286

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           +   KG+A+G  +  V+   E+   LT  +   T   NPV    A   L++I++E L  N
Sbjct: 287 IIFGKGVASGMGLSGVIGRKELMD-LTSGSALLTPAANPVISAAAEATLEIIEEENLLKN 345

Query: 181 CKQVSAQIIGYL 192
             +V   I   L
Sbjct: 346 ALKVGEFIKKRL 357

Length = 457

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 2/115 (1%)

Query: 58  ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
           A++ E +QG  GV    R F+++   L K +  L I DEVQTG GRTG   + +E+ G+ 
Sbjct: 182 AVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG-TLFAYELSGIE 240

Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI 172
           PDI+T+ KGI  G P+ A++   E+A V        T+ GNP+   +   V+  +
Sbjct: 241 PDIMTLGKGIGGGVPLAALLAKAEVA-VFEAGDQGGTYNGNPLMTAVGVAVISQL 294

Length = 395

>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 89.8 bits (223), Expect = 2e-21
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 8/144 (5%)

Query: 57  AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AALI E + QG  G+  +   +L +A EL      L I DE+ TGFGRTG   +  E  G
Sbjct: 208 AALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTG-KLFALEHAG 266

Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTVL 169
           V PDI+ + K +  G+  + A +TT  IAQ +         H  TF  NP+ C IA+  +
Sbjct: 267 VVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESI 326

Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
            ++ +   Q N +++ AQ+   L 
Sbjct: 327 RLLLESPWQQNIQRIEAQLKQELA 350

Length = 429

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score = 89.7 bits (223), Expect = 3e-21
 Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA++ ES+ G +G+   P  +L    EL   +  + I+DEV  GFGRTG  ++  E  GV
Sbjct: 216 AAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK-WFAIEHFGV 274

Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHFN--TFGGNPVGCVIASTVLDVIK 173
            PD++T AKG+ +G+ P+G V  +  IA       +    T+ G+P+ C  A   ++ ++
Sbjct: 275 VPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAME 334

Query: 174 DEELQYNCKQVSAQIIG 190
           +E +  N  ++ A+++G
Sbjct: 335 EEGIVENAARIGAEVLG 351

Length = 451

>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase

 Score = 88.3 bits (219), Expect = 1e-20
 Identities = 43/138 (31%), Positives = 76/138 (55%), Gaps = 9/138 (6%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA IAE + G  GV   P  +  +   ++K  + LFI+DEV   FGR G  + G + + +
Sbjct: 262 AAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMF-GCDKYNI 320

Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTV 168
            PD+V++AK +++ + P+GAV+ + EI+ V+          AH  T+ G+PV C +A   
Sbjct: 321 KPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEA 380

Query: 169 LDVIKDEELQYNCKQVSA 186
           L + K+  +  +  +++ 
Sbjct: 381 LKIYKERNIPEHVNKIAP 398

Length = 504

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score = 86.6 bits (215), Expect = 3e-20
 Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 9/145 (6%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA   E IQG  GV   P+ +L+   E  +    LF++DEV TGFGRTG  +   E  GV
Sbjct: 217 AAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLF-ACEAEGV 275

Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTV 168
            PD++T+AKG+ +G+ PMGAV+ +  + Q +   A       H  T+  +PV   +   V
Sbjct: 276 VPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEV 335

Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
           L +  +  L  N ++   +    L 
Sbjct: 336 LRLYHEGGLLANGQKAGPRFAAGLD 360

Length = 459

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score = 85.4 bits (212), Expect = 1e-19
 Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 9/145 (6%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA I E + G  GV   P+ +  +   +++  + L ++DEV  GFGRTG N +G E  G+
Sbjct: 220 AAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG-NMFGCETFGI 278

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTV 168
            PDI+ M+K +++   P+ AV+   ++   +           H  T  G+PV   +A   
Sbjct: 279 KPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALEN 338

Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
           L +I++ +L  N  +  A++   LR
Sbjct: 339 LAIIEERDLVGNAAERGARLQARLR 363

Length = 460

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score = 84.7 bits (209), Expect = 2e-19
 Identities = 49/124 (39%), Positives = 64/124 (51%), Gaps = 4/124 (3%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E IQG  GV   P  +L     L      L I DEVQTG GRTG  +   E  GV
Sbjct: 226 AAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF-ACEHEGV 284

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIK 173
            PDI+ +AK +  G  P+GA + T  +  VL      H  TFGGNP+ C  A   ++ + 
Sbjct: 285 QPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELL 344

Query: 174 DEEL 177
           ++ L
Sbjct: 345 EKNL 348

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score = 82.0 bits (202), Expect = 2e-18
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 47  FQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD 106
           F+ ++     AA+I E +QG  G    P+  +     L   +  + I+DEVQ+GF RTG 
Sbjct: 190 FKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG- 248

Query: 107 NYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIAS 166
             +  + +   PD++TMAK +A G P+  VV    I           T+ GNP+    A 
Sbjct: 249 KLFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAH 308

Query: 167 TVLDVIKDEEL 177
            VL++I  E L
Sbjct: 309 AVLNIIDKESL 319

Length = 421

>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

 Score = 80.9 bits (200), Expect = 3e-18
 Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 8/139 (5%)

Query: 57  AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AA+I E I QG  G++ +   +L+R  +L      L I+DE+ TGFGRTG   +  E  G
Sbjct: 206 AAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG-KLFACEHAG 264

Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTVL 169
           ++PDI+ + K +  G   + A +TT E+A+ ++        H  TF GNP+ C +A+  L
Sbjct: 265 IAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASL 324

Query: 170 DVIKDEELQYNCKQVSAQI 188
            +++  + Q     + AQ+
Sbjct: 325 SLLESGDWQQQVAAIEAQL 343

Length = 428

>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 81.0 bits (200), Expect = 4e-18
 Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 35  ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFIS 94
           +S +   + + + +  +  T AA +I   +QG  G++      +     L   ++ L I+
Sbjct: 181 SSPQEISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIA 240

Query: 95  DEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA--- 150
           DE+ TGFGRTG   +     GV+PDI+ + K +  GF    A + T ++AQ+++      
Sbjct: 241 DEIATGFGRTG-ELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGG 299

Query: 151 ---HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII 189
              H  TF  NP+ C +A   L++I+    +   K++ A++I
Sbjct: 300 ALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELI 341

Length = 422

>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional

 Score = 80.1 bits (198), Expect = 7e-18
 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 13/145 (8%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA IAE + G  G+   P  +      ++K  + L I+DEV TGFGR G  + G + +G+
Sbjct: 222 AAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMF-GSDHYGI 280

Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTV 168
            PD++T+AKG+ + + P+   +   ++  VL + +       H  T+ G+P+    A   
Sbjct: 281 EPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALAN 340

Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
           LD+++ E L  N  +V A    Y R
Sbjct: 341 LDILERENLVGNAAEVGA----YFR 361

Length = 461

>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 6/126 (4%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+  E +Q   G    P  +  R  E+    + L +SDEV   FGR G+  +G E  G 
Sbjct: 223 AAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE-MFGCERFGY 281

Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDV 171
            PDI+T AKGI +G+ P+GA++ +  + +          H  TFGG+PV   +A   LD+
Sbjct: 282 VPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDI 341

Query: 172 IKDEEL 177
            + E L
Sbjct: 342 FEREGL 347

Length = 460

>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 79.3 bits (195), Expect = 1e-17
 Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 9/128 (7%)

Query: 58  ALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           ALI E  +Q   G++     +LRRA EL  ++    I+DE+ TGFGRTG   +  E  GV
Sbjct: 239 ALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTG-TLFACEQAGV 297

Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA------HFNTFGGNPVGCVIASTVL 169
            PD++ ++KG+  GF P+ AV+ T ++       +      H +++ GNP+ C  A   L
Sbjct: 298 MPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATL 357

Query: 170 DVIKDEEL 177
           D+  D+++
Sbjct: 358 DIFADDDV 365

Length = 472

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score = 78.8 bits (195), Expect = 2e-17
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 9/144 (6%)

Query: 57  AALIAESIQGVS--GVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
           AA +AE++ G +   V   P YF +R  E+      L I DEV  G GRTG   +  E  
Sbjct: 201 AAFVAETVVGATAGAVPPVPGYF-KRIREVCDRYGVLLILDEVMCGMGRTG-TLFACEED 258

Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA----HFNTFGGNPVGCVIASTVL 169
           GV+PD+VT+AKG+  G+ P+GAV+ +  I   +   +    H +T+ G+   C  A  V 
Sbjct: 259 GVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQ 318

Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
            VI ++ L  N +    Q+   LR
Sbjct: 319 RVIAEDGLLANVRARGEQLRARLR 342

Length = 443

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 51/144 (35%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A  IAE IQG  G   F   F     EL   ++ L I DEVQTG G TG   W ++  GV
Sbjct: 227 ACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTG-TAWAYQQLGV 285

Query: 117 SPDIVTMAK-----GIANGFPMGAVVTTTEIA-QVLTKAAHFN-TFGGNPVGCVIASTVL 169
            PDIV   K     GI  G     V    E+   V   ++  N T+GGN V  V A  +L
Sbjct: 286 RPDIVAFGKKTQVCGIMAG---RRV---DEVEDNVFAVSSRINSTWGGNLVDMVRARRIL 339

Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
           +VI+++ L  N  +    ++  L 
Sbjct: 340 EVIEEDGLVENAARQGEYLLARLE 363

Length = 443

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score = 78.2 bits (193), Expect = 3e-17
 Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 9/128 (7%)

Query: 57  AALIAESIQGVSG--VKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
           AA IAE I G +G  V     Y+ +   E+    + LFI+DEV TG GRTG  +   E  
Sbjct: 201 AAFIAEPIIGAAGAAVVPPKGYY-KVIKEICDHYDILFIADEVMTGLGRTGAMF-AMEHW 258

Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHF----NTFGGNPVGCVIASTVL 169
           GV PDI+T+ KG+  G+ P+ A V +  + + + + +      +T   NP+    A  VL
Sbjct: 259 GVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVL 318

Query: 170 DVIKDEEL 177
           + ++   L
Sbjct: 319 EYMEKHNL 326

Length = 447

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 77.8 bits (192), Expect = 5e-17
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 2/137 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E +QG  GV   P  +LR    + +      I DE+Q+GFGRTG   + FE  G+
Sbjct: 233 AAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTG-KMFAFEHAGI 291

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PD+V ++K I    P+ AVV   E        AH  TF GN +     S  L  IK+  
Sbjct: 292 IPDVVVLSKAIGGSLPL-AVVVYREWLDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHR 350

Query: 177 LQYNCKQVSAQIIGYLR 193
           L  +   +  ++  +LR
Sbjct: 351 LAEHAAAMGERLREHLR 367

Length = 464

>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional

 Score = 76.8 bits (189), Expect = 1e-16
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 6/124 (4%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A  +AE  QG  G+   P  +      + +  + L  +DEV  GFGRTG+ ++  E  G 
Sbjct: 224 AGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGE-WFAHEHFGF 282

Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDV 171
            PD +++AKG+ +G+ PMG +V +  IA+ L +     AH  T+ G+PV   +A   L  
Sbjct: 283 EPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKA 342

Query: 172 IKDE 175
           ++DE
Sbjct: 343 LRDE 346

Length = 460

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 52/138 (37%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A  IAE IQG  G   F   FLR    L   ++ L I DEVQTG G TG   W ++  GV
Sbjct: 220 ACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTG-TAWAYQQLGV 278

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIA-QVLTKAAHFN-TFGGNPVGCVIASTVLDVIKD 174
            PDIV   K       M A     E+A  V    +  N T+GGN V  V A+ +L++I++
Sbjct: 279 QPDIVAFGKKTQVCGIM-AGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEE 337

Query: 175 EELQYNCKQVSAQIIGYL 192
           E L  N +   A ++  L
Sbjct: 338 ERLVDNARVQGAHLLARL 355

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 75.6 bits (186), Expect = 3e-16
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 10/139 (7%)

Query: 57  AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AA+I E  IQG  G++ +   +L+   E         I DE+  GFGRTG   +  E  G
Sbjct: 216 AAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG-TMFACEQAG 274

Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQV-------LTKAAHFNTFGGNPVGCVIAST 167
           + PD + ++K +  G+ P+ AV+TT  + Q        L    H +++ GNP+ C  A  
Sbjct: 275 IRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALA 334

Query: 168 VLDVIKDEELQYNCKQVSA 186
            LD+ + + +  N + ++ 
Sbjct: 335 TLDIFEQDNVIENNRALAR 353

Length = 466

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E++QG  G+      +L+R  +L + ++ L I D++Q G GRTG  ++ FE  G+
Sbjct: 196 AAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG-TFFSFEPAGI 254

Query: 117 SPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI-KD 174
            PDIV ++K I+  G P+   +   E+  V     H  TF GN +  V A+  L+    D
Sbjct: 255 EPDIVCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSD 313

Query: 175 EELQYNCKQVSAQIIGYLR 193
           +  +   ++ S  I   L 
Sbjct: 314 DAFEKAVQRKSEIIQERLD 332

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E++QG  G+      +L+R  +L + ++ L I D++Q G GRTG  ++ FE  G+
Sbjct: 200 AAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT-FFSFERAGI 258

Query: 117 SPDIVTMAKGI-ANGFPMGAVVTTTEIAQVLTKAAHFNTFGGN 158
           +PDIVT++K I   G PM  V+   E+  V     H  TF GN
Sbjct: 259 TPDIVTLSKSISGYGLPMALVLIKPEL-DVWKPGEHNGTFRGN 300

Length = 425

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score = 73.4 bits (181), Expect = 1e-15
 Identities = 48/156 (30%), Positives = 65/156 (41%), Gaps = 16/156 (10%)

Query: 28  CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
            P N  EA     E+    +  ++     AA+I E + G  GV      FL    EL + 
Sbjct: 182 LPYNDLEA----LEEAFEEYGDDI-----AAVIVEPVAGNMGVVPPEPGFLEGLRELTEE 232

Query: 88  NNGLFISDEVQTGFGRTGDN-YWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVL 146
           +  L I DEV TGF R       G+  +GV PD+ T+ K I  G P+GA     EI + L
Sbjct: 233 HGALLIFDEVITGF-RVALGGAQGY--YGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQL 289

Query: 147 TKAAHF---NTFGGNPVGCVIASTVLDVIKDEELQY 179
                     T  GNP+        L+ +  EE  Y
Sbjct: 290 APLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVY 325

Length = 432

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score = 72.4 bits (178), Expect = 4e-15
 Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 7/126 (5%)

Query: 55  GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
           G  A IAE+++    V+   + + +R  E+   +N L I DE+  G GRTG+ ++  + +
Sbjct: 229 GIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGE-WFTHQAY 286

Query: 115 GVSPDIVTMAKGIANG-FPMGAVVTTT--EIAQVLTKAAHFNTFGGNPVGCVIASTVLDV 171
           G+ PDI+ + KG+  G  P+ A++T      A  ++   H+ T   +P+GC  A   ++V
Sbjct: 287 GIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQIS-LGHY-THEKSPLGCAAALATIEV 344

Query: 172 IKDEEL 177
           I+ E L
Sbjct: 345 IEQEGL 350

Length = 459

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score = 71.8 bits (176), Expect = 7e-15
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 41  EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG 100
           E L+   +++ P+   AA+I E IQ   G       F R+  ++ K +N  FI DEVQTG
Sbjct: 242 EDLIK--KWHKPV---AAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTG 296

Query: 101 FGRTGDNYWGFEMHGVS--PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGN 158
            G TG  +W  E   +   PD+VT +K     F            +       FNT+ G+
Sbjct: 297 VGATG-KFWAHEHWNLDDPPDMVTFSK----KFQTAGYFFHDPAFRPNKPYRQFNTWMGD 351

Query: 159 PVGCVIASTVLDVIKDEELQYNCKQV 184
           P   +I   ++  IK ++L  N   V
Sbjct: 352 PSRALILREIIQEIKRKDLLENVAHV 377

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 14/154 (9%)

Query: 27  SCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIK 86
             P N  EA     E++   +   +     A +I E + G  GV      FL     L +
Sbjct: 176 VLPYNDLEA----LEEVFEEYGEEI-----AGVIVEPVAGNMGVVPPKPEFLAGLRALTE 226

Query: 87  SNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVL 146
               L I DEV TGF R        E  GV PD+ T+ K I  G P+GA     EI + L
Sbjct: 227 EYGSLLIFDEVMTGF-RVALGGAQ-EYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERL 284

Query: 147 T---KAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
                     T  GNP+        L ++ +E +
Sbjct: 285 APEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGV 318

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423

>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 57.4 bits (140), Expect = 4e-10
 Identities = 40/113 (35%), Positives = 50/113 (44%), Gaps = 17/113 (15%)

Query: 57  AALIAESIQGVSGV----KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE 112
           AA+I E + G  GV      F    LR   EL   +  L I DEV TGF R         
Sbjct: 199 AAVIVEPVAGNMGVVPPKPGFLE-GLR---ELCDEHGALLIFDEVMTGF-RVALGGA-QG 252

Query: 113 MHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKA-----AHFNTFGGNPV 160
            +GV+PD+ T+ K I  G P+GA     EI + L        A   T  GNP+
Sbjct: 253 YYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQA--GTLSGNPL 303

Length = 426

>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase

 Score = 56.7 bits (137), Expect = 9e-10
 Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-G 115
           AA+I E + G SG     + FL    E+ K N  L + DEV TGF R    Y G + + G
Sbjct: 248 AAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIA--YGGAQEYFG 304

Query: 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA---HFNTFGGNP 159
           ++PD+ T+ K I  G P+GA     EI +++  A       T  GNP
Sbjct: 305 ITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNP 351

Length = 474

>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 9/145 (6%)

Query: 57  AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AALI E  +Q  +G+      +LR    L        I+DE+  G GRTG  ++  E  G
Sbjct: 223 AALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG-TFFACEQAG 281

Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA------HFNTFGGNPVGCVIASTV 168
           V PD + ++KGI+ G+ P+  V++   I              H +++ GNP+ C  A   
Sbjct: 282 VWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALAT 341

Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
           LD+  ++++     + SA++   L 
Sbjct: 342 LDLFAEDDVLARNARKSARLRAALA 366

Length = 453

>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 42/126 (33%), Positives = 52/126 (41%), Gaps = 13/126 (10%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF----GRTGDNYWGFE 112
           AA++ E I G  G+ E    FL    EL      L I DEV T F    G   D      
Sbjct: 202 AAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLL---- 257

Query: 113 MHGVSPDIVTMAKGIANGFPMGAVVTTTEIA-QV--LTKAAHFNTFGGNPVGCVIASTVL 169
             GV PD+  + K I  G P+GA     +I  QV  L  A    T  GNP         L
Sbjct: 258 --GVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACL 315

Query: 170 DVIKDE 175
           +V++ E
Sbjct: 316 EVLQQE 321

Length = 428

>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 18/114 (15%)

Query: 42  QLVNAFQYNVPITGAAALIAESIQGVSGV-------KEFPRYFLRRAYELIKSNNGLFIS 94
            L   F+YN  I    AL  +    ++ V        E    FL     L   N  LFI 
Sbjct: 164 ALTVTFRYN-DIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFIL 222

Query: 95  DEVQTGFGRTGDNYWGF----EMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQ 144
           DE+ TGF       W      +++G+ PD+    K + NGF + A+    E  +
Sbjct: 223 DEMITGF------RWHMRGAQKLYGIVPDLSCFGKALGNGFAVSALAGKREYME 270

Length = 431

>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 11/133 (8%)

Query: 57  AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTG-DNYWGFEMH 114
           AALI E  + G  G+      F R   ++ +S     I DEV TG  R G ++ W  E+ 
Sbjct: 586 AALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAW--ELL 643

Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQV------LTKAAHFNTFGGNPVGCVIAST 167
           G  PDI   AK +  G  P+ A + T E+ +       L    H +++  +P+GC  A+ 
Sbjct: 644 GCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAK 703

Query: 168 VLDVIKDEELQYN 180
            L   KD     N
Sbjct: 704 ALQWYKDPSTNPN 716

Length = 817

>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 77  FLRRAYELIKSNNGLFISDEVQT------GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG 130
           F     EL +    L + DE  T      G+ R          HG+ PD + + K IA G
Sbjct: 240 FHEALRELTRRYGTLLVIDETHTISSGPGGYTRA---------HGLEPDFLVVGKPIAGG 290

Query: 131 FPMGAVVTTTEIA 143
            P      + E+A
Sbjct: 291 VPCAVYGFSAELA 303

Length = 453

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
KOG1404|consensus	442		100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	100.0
PRK05965	459	hypothetical protein; Provisional	100.0
PRK07482	461	hypothetical protein; Provisional	100.0
PRK07678	451	aminotransferase; Validated	100.0
PRK06062	451	hypothetical protein; Provisional	100.0
PRK07481	449	hypothetical protein; Provisional	100.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PLN02760	504	4-aminobutyrate:pyruvate transaminase	100.0
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07483	443	hypothetical protein; Provisional	100.0
PRK12403	460	putative aminotransferase; Provisional	100.0
PRK07480	456	putative aminotransferase; Validated	100.0
PRK07036	466	hypothetical protein; Provisional	100.0
KOG1402|consensus	427		100.0
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK06105	460	aminotransferase; Provisional	100.0
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06148	1013	hypothetical protein; Provisional	100.0
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	100.0
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	100.0
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06917	447	hypothetical protein; Provisional	100.0
PRK06541	460	hypothetical protein; Provisional	100.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	100.0
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	100.0
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	100.0
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	100.0
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	100.0
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	100.0
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06149	972	hypothetical protein; Provisional	100.0
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	100.0
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	100.0
KOG1401|consensus	433		100.0
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	100.0
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	100.0
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	100.0
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	100.0
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	100.0
PRK03715	395	argD acetylornithine transaminase protein; Provisi	100.0
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	100.0
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	100.0
KOG1403|consensus	452		100.0
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	100.0
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	100.0
PRK09792	421	4-aminobutyrate transaminase; Provisional	100.0
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	100.0
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	100.0
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	100.0
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07046	453	aminotransferase; Validated	100.0
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.98
PRK08297	443	L-lysine aminotransferase; Provisional	99.98
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.98
PLN00144	382	acetylornithine transaminase	99.98
PLN02624	474	ornithine-delta-aminotransferase	99.97
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.97
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.97
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.97
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.97
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.97
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.97
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.97
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.97
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.97
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.96
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.96
PRK02627	396	acetylornithine aminotransferase; Provisional	99.96
PRK04260	375	acetylornithine aminotransferase; Provisional	99.95
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.95
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.95
KOG1405|consensus	484		99.93
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.92
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.91
PLN02822	481	serine palmitoyltransferase	99.89
PLN02955	476	8-amino-7-oxononanoate synthase	99.88
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.85
PRK09064	407	5-aminolevulinate synthase; Validated	99.84
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.82
KOG1360|consensus	570		99.81
PRK13393	406	5-aminolevulinate synthase; Provisional	99.81
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.76
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.75
PRK13392	410	5-aminolevulinate synthase; Provisional	99.72
PRK07505	402	hypothetical protein; Provisional	99.72
KOG1359|consensus	417		99.72
PLN02483	489	serine palmitoyltransferase	99.71
PRK07179	407	hypothetical protein; Provisional	99.7
KOG0257|consensus	420		99.69
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.69
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.68
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.67
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.66
PLN00175	413	aminotransferase family protein; Provisional	99.66
PRK07682	378	hypothetical protein; Validated	99.65
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.64
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.64
PRK07324	373	transaminase; Validated	99.63
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.63
PRK06108	382	aspartate aminotransferase; Provisional	99.63
PRK06348	384	aspartate aminotransferase; Provisional	99.62
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.62
PRK07777	387	aminotransferase; Validated	99.61
PLN02368	407	alanine transaminase	99.6
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.59
PRK09082	386	methionine aminotransferase; Validated	99.59
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.59
PRK06207	405	aspartate aminotransferase; Provisional	99.58
PRK07681	399	aspartate aminotransferase; Provisional	99.58
PRK12414	384	putative aminotransferase; Provisional	99.58
PRK05942	394	aspartate aminotransferase; Provisional	99.57
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.57
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.57
PRK08068	389	transaminase; Reviewed	99.57
PRK06290	410	aspartate aminotransferase; Provisional	99.57
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.56
PRK08175	395	aminotransferase; Validated	99.56
PRK08960	387	hypothetical protein; Provisional	99.56
PRK09148	405	aminotransferase; Validated	99.56
PRK08636	403	aspartate aminotransferase; Provisional	99.55
PRK05957	389	aspartate aminotransferase; Provisional	99.55
PRK08912	387	hypothetical protein; Provisional	99.55
PRK05764	393	aspartate aminotransferase; Provisional	99.54
KOG1357|consensus	519		99.54
PRK07550	386	hypothetical protein; Provisional	99.53
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.52
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.51
PRK07568	397	aspartate aminotransferase; Provisional	99.51
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.5
PRK07683	387	aminotransferase A; Validated	99.5
PRK08361	391	aspartate aminotransferase; Provisional	99.5
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.5
PTZ00377	481	alanine aminotransferase; Provisional	99.5
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.5
PRK06225	380	aspartate aminotransferase; Provisional	99.5
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.5
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.49
PRK06107	402	aspartate aminotransferase; Provisional	99.49
PLN02656	409	tyrosine transaminase	99.49
PLN02187	462	rooty/superroot1	99.47
PRK06855	433	aminotransferase; Validated	99.47
PLN02397	423	aspartate transaminase	99.47
PRK07337	388	aminotransferase; Validated	99.47
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.47
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.46
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.46
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.46
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.46
PTZ00376	404	aspartate aminotransferase; Provisional	99.46
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.46
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.44
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.44
PTZ00433	412	tyrosine aminotransferase; Provisional	99.44
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.44
PLN02231	534	alanine transaminase	99.44
PRK03321	352	putative aminotransferase; Provisional	99.44
PRK08363	398	alanine aminotransferase; Validated	99.43
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.41
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.41
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.41
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.4
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.4
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.4
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.4
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.39
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.39
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.39
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.38
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.38
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.38
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.38
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.37
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.37
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.36
PRK05839	374	hypothetical protein; Provisional	99.36
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.36
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.36
PRK09275	527	aspartate aminotransferase; Provisional	99.36
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.36
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.35
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.34
PLN02242	418	methionine gamma-lyase	99.34
PRK09265	404	aminotransferase AlaT; Validated	99.34
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.32
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.31
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.31
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.3
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.3
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.3
PRK09105	370	putative aminotransferase; Provisional	99.3
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.3
PLN02721	353	threonine aldolase	99.27
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.27
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.26
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.26
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.25
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.24
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.24
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.24
PRK06460	376	hypothetical protein; Provisional	99.23
PRK07049	427	methionine gamma-lyase; Validated	99.23
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.22
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.22
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.22
PRK08637	388	hypothetical protein; Provisional	99.22
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.21
PLN02672	1082	methionine S-methyltransferase	99.21
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.2
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.2
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.18
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.17
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.17
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.16
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.16
PRK06836	394	aspartate aminotransferase; Provisional	99.16
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.16
PRK08354	311	putative aminotransferase; Provisional	99.15
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.15
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.15
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.15
PRK06234	400	methionine gamma-lyase; Provisional	99.14
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.14
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.13
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.13
PRK06767	386	methionine gamma-lyase; Provisional	99.13
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.13
PRK02948	381	cysteine desulfurase; Provisional	99.12
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.11
KOG0259|consensus	447		99.11
PRK08249	398	cystathionine gamma-synthase; Provisional	99.1
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.1
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.1
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.09
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.09
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.09
PRK10534	333	L-threonine aldolase; Provisional	99.09
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.08
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.08
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.08
PRK07908	349	hypothetical protein; Provisional	99.07
PRK08776	405	cystathionine gamma-synthase; Provisional	99.07
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.06
PRK07503	403	methionine gamma-lyase; Provisional	99.06
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.06
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.03
PLN02409	401	serine--glyoxylate aminotransaminase	99.03
PRK07811	388	cystathionine gamma-synthase; Provisional	99.03
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.02
PLN02509	464	cystathionine beta-lyase	99.02
PRK08574	385	cystathionine gamma-synthase; Provisional	99.0
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	98.99
KOG1358|consensus	467		98.99
PLN02651	364	cysteine desulfurase	98.98
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	98.96
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	98.96
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	98.95
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	98.94
KOG0256|consensus	471		98.93
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	98.92
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	98.92
PRK08045	386	cystathionine gamma-synthase; Provisional	98.91
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	98.91
PRK07269	364	cystathionine gamma-synthase; Reviewed	98.9
PRK07582	366	cystathionine gamma-lyase; Validated	98.9
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	98.88
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	98.88
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	98.87
PRK08861	388	cystathionine gamma-synthase; Provisional	98.85
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	98.84
PRK14012	404	cysteine desulfurase; Provisional	98.84
PRK09028	394	cystathionine beta-lyase; Provisional	98.84
PRK07050	394	cystathionine beta-lyase; Provisional	98.8
PRK05968	389	hypothetical protein; Provisional	98.79
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	98.78
PRK00451	447	glycine dehydrogenase subunit 1; Validated	98.77
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	98.76
PRK07671	377	cystathionine beta-lyase; Provisional	98.74
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	98.73
PRK08064	390	cystathionine beta-lyase; Provisional	98.72
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	98.72
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	98.7
KOG0633|consensus	375		98.69
PRK05939	397	hypothetical protein; Provisional	98.69
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	98.69
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	98.65
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	98.64
PRK05967	395	cystathionine beta-lyase; Provisional	98.63
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	98.62
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	98.62
PRK08114	395	cystathionine beta-lyase; Provisional	98.6
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	98.54
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	98.54
KOG0634|consensus	472		98.53
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	98.53
PRK04311	464	selenocysteine synthase; Provisional	98.5
PRK13237	460	tyrosine phenol-lyase; Provisional	98.47
PRK02769	380	histidine decarboxylase; Provisional	98.45
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	98.45
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	98.43
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	98.42
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	98.42
PRK04366	481	glycine dehydrogenase subunit 2; Validated	98.41
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	98.41
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	98.4
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	98.33
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	98.31
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	98.26
KOG0053|consensus	409		98.26
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.2
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.15
KOG1368|consensus	384		98.14
PLN02271	586	serine hydroxymethyltransferase	98.14
KOG2862|consensus	385		98.1
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	98.08
PLN03032	374	serine decarboxylase; Provisional	98.07
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	98.05
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	98.02
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	98.02
PRK06434	384	cystathionine gamma-lyase; Validated	98.02
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.02
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	97.94
PRK15029	755	arginine decarboxylase; Provisional	97.94
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	97.92
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	97.9
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	97.85
PRK05367	954	glycine dehydrogenase; Provisional	97.8
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	97.79
PLN02880	490	tyrosine decarboxylase	97.79
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	97.73
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	97.72
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	97.7
PLN02724	805	Molybdenum cofactor sulfurase	97.66
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	97.66
KOG1549|consensus	428		97.58
PRK03080	378	phosphoserine aminotransferase; Provisional	97.55
PRK12566	954	glycine dehydrogenase; Provisional	97.52
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	97.51
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	97.5
PLN02263	470	serine decarboxylase	97.43
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	97.42
PLN02590	539	probable tyrosine decarboxylase	97.32
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	97.25
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	97.17
PRK13578	720	ornithine decarboxylase; Provisional	97.15
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	97.12
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	97.04
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	96.95
PRK15399	713	lysine decarboxylase LdcC; Provisional	96.92
KOG0258|consensus	475		96.54
PRK15400	714	lysine decarboxylase CadA; Provisional	96.28
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	96.01
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	95.33
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	95.14
COG3844	407	Kynureninase [Amino acid transport and metabolism]	94.79
PLN02452	365	phosphoserine transaminase	94.79
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	94.61
PRK12462	364	phosphoserine aminotransferase; Provisional	94.59
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	94.57
KOG2467|consensus	477		94.21
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	94.17
KOG1412|consensus	410		94.04
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	94.0
KOG0629|consensus	510		93.92
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	93.01
PLN02414	993	glycine dehydrogenase (decarboxylating)	92.52
PRK05367	954	glycine dehydrogenase; Provisional	91.3
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	91.12
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	90.75
smart00642	166	Aamy Alpha-amylase domain.	88.78
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	87.97
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	86.25
KOG0628|consensus	511		86.08
KOG3846|consensus	465		85.11
KOG1411|consensus	427		84.88
KOG2040|consensus	1001		82.77
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	80.45

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-44  Score=311.51  Aligned_cols=175  Identities=39%  Similarity=0.569  Sum_probs=154.8

Q ss_pred             CCCCCCCCCCCCCCcCCCCcccccccCCCCccchhHHHHHHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHH
Q psy13322          1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLR   79 (195)
Q Consensus         1 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~   79 (195)
                      |+||+||++|+...                  .+....+++.+++.+.+.. +..++||||+|||||++|.+++|++||+
T Consensus       185 Pyp~~yr~p~~~~~------------------~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~  246 (447)
T COG0160         185 PYPNPYRCPFGIGG------------------EECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLK  246 (447)
T ss_pred             cCCccccCcccCch------------------hhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHH
Confidence            68999999988410                  1223445666777555432 1158999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchH
Q psy13322         80 RAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNP  159 (195)
Q Consensus        80 ~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p  159 (195)
                      +|+++|+|||+++|+||||+||||||+ +|+++++|+.|||+|+||++++|+|+|++++++++++ .....+.+||++||
T Consensus       247 ~l~~~~~~~gillI~DEVQtG~GRTG~-~fa~E~~gv~PDivt~aK~ig~G~Pl~avv~r~ei~~-~~~g~~~~Tf~GNp  324 (447)
T COG0160         247 ALRKLCREHGILLIADEVQTGFGRTGK-MFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMD-WPPGGHGGTFGGNP  324 (447)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCcccc-chhhhhcCCCCCEEEecccccCCCceeEEeccHHhcc-cCCcccCCCCCcCH
Confidence            999999999999999999999999997 9999999999999999999999999999999999999 66677999999999


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        160 VGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       160 ~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      ++|+|++|+|++++++++.++..+++++|+++|+++
T Consensus       325 va~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l  360 (447)
T COG0160         325 VACAAALAVLDVIEEENLLERAAELGEYLRDRLEEL  360 (447)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999764

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=6.7e-43  Score=296.21  Aligned_cols=150  Identities=43%  Similarity=0.699  Sum_probs=143.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++++.     ++++|||+|||||++|.++++++||+++++||++||++||+||||||+||||+ +|+++++|+.||
T Consensus       174 i~al~~ai~-----~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk-~fA~e~~gV~PD  247 (404)
T COG4992         174 IEALEAAID-----EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK-LFAYEHYGVEPD  247 (404)
T ss_pred             HHHHHHHhc-----cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccch-HHHHHHhCCCCC
Confidence            688898888     48999999999999999999999999999999999999999999999999998 999999999999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      |+|++|++|||+|+|++++++.+.+.+....|++||++||++|+++.++|+++.++++.+++++.+++|+++|+++
T Consensus       248 I~tlaK~LgGG~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l  323 (404)
T COG4992         248 ILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLREL  323 (404)
T ss_pred             EEEeeccccCCccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987888888888999999999999999999999999999999999999999999864

>KOG1404|consensus

Probab=100.00  E-value=2.6e-41  Score=282.73  Aligned_cols=176  Identities=56%  Similarity=0.987  Sum_probs=165.2

Q ss_pred             CCCCCCCCCCCCCCcCCCCcccccccCCCCccchhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q psy13322          1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRR   80 (195)
Q Consensus         1 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~   80 (195)
                      |.|+.||++|++.                 +.||+-+++.++|++.+....+ ..+|++|.|||||.+|.+.+++.||++
T Consensus       176 ~~Pdp~r~~~~~~-----------------~~~e~~d~~a~~l~d~i~~~~~-~~vAafiaEtIqGvgG~v~~p~GYlka  237 (442)
T KOG1404|consen  176 MNPDPYRGIFGGS-----------------NEEEASDRYAKELEDLILYDGP-ETVAAFIAETIQGVGGIVELPPGYLKA  237 (442)
T ss_pred             CCCCcccccCCCC-----------------chhhhHHHHHHHHHHHHHhcCC-CceeEEEeehhccCCccccCCchHHHH
Confidence            4699999999972                 1367889999999999998777 489999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCceEEEEecHHHHHHhhccc-cccCCCchH
Q psy13322         81 AYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA-HFNTFGGNP  159 (195)
Q Consensus        81 l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~-~~~t~~~~p  159 (195)
                      +.++|+|+|.++|+||||+||||+| ++|+++..++.|||+|++|++|+|+|+|+++++++|++.+.+.. +.+||++||
T Consensus       238 ~~~~v~k~Ggl~IaDEVqtGfGRtG-~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP  316 (442)
T KOG1404|consen  238 AYKVVRKRGGLFIADEVQTGFGRTG-HMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQKSSHFNTYGGNP  316 (442)
T ss_pred             HHHHHHHcCCEEEehhhhhcccccc-ccccccccCCCccHHHHHhhccCCCcceeeecCHHHHHHHHhccccccccCCCc
Confidence            9999999999999999999999999 59999999999999999999999999999999999999998877 899999999


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        160 VGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       160 ~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      ++|++++++|+++++++++++..+.+.+|++.|.++
T Consensus       317 ~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l  352 (442)
T KOG1404|consen  317 VACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAAL  352 (442)
T ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999763

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=6e-41  Score=289.41  Aligned_cols=158  Identities=33%  Similarity=0.561  Sum_probs=149.0

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc
Q psy13322         34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGV-SGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE  112 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~-~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~  112 (195)
                      ++ .+++++|+++|.++++ ++|||||+|||.+. +|++++++.||++++++|++||++||+|||.|||||||+ +|+++
T Consensus       195 ~~-~~~a~~le~~i~~~g~-~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~-~FA~e  271 (449)
T COG0161         195 EF-AEAADELEALILEHGP-ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK-MFACE  271 (449)
T ss_pred             HH-HHHHHHHHHHHHhcCc-ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCch-hhhhh
Confidence            44 5889999999999987 59999999998776 999999999999999999999999999999999999998 89999


Q ss_pred             ccCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc-----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q psy13322        113 MHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSA  186 (195)
Q Consensus       113 ~~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~-----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~  186 (195)
                      ++|++|||+|+||++++|| |+|++++++++.+.+...     .|++||++||++|+||+++|++++++++++++++++.
T Consensus       272 ~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~  351 (449)
T COG0161         272 HAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGA  351 (449)
T ss_pred             hcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999999999999996 999999999999988764     3899999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q psy13322        187 QIIGYLRV  194 (195)
Q Consensus       187 ~l~~~L~~  194 (195)
                      +|.++|++
T Consensus       352 ~l~~~L~~  359 (449)
T COG0161         352 YLQAGLQA  359 (449)
T ss_pred             HHHHHHHH
Confidence            99999985

>PRK05965 hypothetical protein; Provisional

Probab=100.00  E-value=5.5e-40  Score=289.31  Aligned_cols=160  Identities=31%  Similarity=0.466  Sum_probs=147.0

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      +....+++.+++.|++..+ +++||||+|||||.+|.++++++||++|+++|++||++||+|||++||||+|+ +|++++
T Consensus       195 ~~~~~~~~~l~~~i~~~~~-~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~  272 (459)
T PRK05965        195 AIIAASVAALRAKVAELGA-DNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP-LFACEA  272 (459)
T ss_pred             HHHHHHHHHHHHHHHhcCC-CceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch-hhhHhh
Confidence            3456778899999986544 58999999999999999999999999999999999999999999999999998 889999


Q ss_pred             cCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322        114 HGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS  185 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~  185 (195)
                      +|++|||+|+||+++||+ |+|++++++++++.+..       ..+++||++||++|+|++++|++++++++.+++++++
T Consensus       273 ~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g  352 (459)
T PRK05965        273 EGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAG  352 (459)
T ss_pred             cCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            999999999999999995 99999999999988753       2478899999999999999999999999999999999


Q ss_pred             HHHHHHhhcC
Q psy13322        186 AQIIGYLRVV  195 (195)
Q Consensus       186 ~~l~~~L~~l  195 (195)
                      ++|.+.|+++
T Consensus       353 ~~l~~~l~~l  362 (459)
T PRK05965        353 PRFAAGLDAL  362 (459)
T ss_pred             HHHHHHHHhh
Confidence            9999999764

>PRK07482 hypothetical protein; Provisional

Probab=100.00  E-value=6.4e-39  Score=282.68  Aligned_cols=157  Identities=31%  Similarity=0.495  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ...+++.|++++.+..+ +++||||+|||+|.+|.++++++||++|+++|++||++||+|||++||||+|+ +|+++++|
T Consensus       202 ~~~~~~~l~~~~~~~~~-~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-~~a~~~~g  279 (461)
T PRK07482        202 SAYCADELEELILAEGP-DTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS-MFGSDHYG  279 (461)
T ss_pred             HHHHHHHHHHHHHhcCC-CcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc-hhhHHhcC
Confidence            45678999998865433 58999999999999999999999999999999999999999999999999998 88999999


Q ss_pred             CCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322        116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ  187 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~  187 (195)
                      ++|||+|+||+++||+ |+|++++++++++.+..       ..+++||++||++|+|++++|++++++++.+++++++++
T Consensus       280 v~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~  359 (461)
T PRK07482        280 IEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAY  359 (461)
T ss_pred             CCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999999996 99999999999988752       237889999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      |.+.|++
T Consensus       360 l~~~L~~  366 (461)
T PRK07482        360 FRARLRA  366 (461)
T ss_pred             HHHHHHH
Confidence            9999975

>PRK07678 aminotransferase; Validated

Probab=100.00  E-value=6e-39  Score=282.21  Aligned_cols=157  Identities=34%  Similarity=0.578  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ...+++.++++|+...+ +++||||+|||+|.+|.++++++||++|+++|++||++||+|||++||||+|+ +|+++++|
T Consensus       195 ~~~~~~~l~~~~~~~~~-~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~g  272 (451)
T PRK07678        195 DLECVKEIDRVMTWELS-ETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK-AFGFMNYG  272 (451)
T ss_pred             HHHHHHHHHHHHHhcCC-CceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch-hHHHHhcC
Confidence            45567788888874433 58999999999999999999999999999999999999999999999999998 88899999


Q ss_pred             CCcchhhhccccCCC-CceEEEEecHHHHHHhhc------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy13322        116 VSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTK------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI  188 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l  188 (195)
                      ++|||+|+||+++|| +|+|++++++++++.+..      ..+++||++||++|+|++++|++++++++.+++++++++|
T Consensus       273 v~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l  352 (451)
T PRK07678        273 VKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELL  352 (451)
T ss_pred             CCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999999988 599999999999998864      2378999999999999999999998889999999999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      ++.|++
T Consensus       353 ~~~l~~  358 (451)
T PRK07678        353 LEQLKE  358 (451)
T ss_pred             HHHHHH
Confidence            999864

>PRK06062 hypothetical protein; Provisional

Probab=100.00  E-value=6.5e-39  Score=281.94  Aligned_cols=158  Identities=29%  Similarity=0.543  Sum_probs=143.9

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ...++++.|+++|+...+ +++|+||+|||||++|+++++++||++|+++|++||++||+||||+||||+|. +|+++++
T Consensus       195 ~~~~~~~~le~~l~~~~~-~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~-~~a~~~~  272 (451)
T PRK06062        195 ECERALAHLERVIELEGP-STIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK-WFAIEHF  272 (451)
T ss_pred             HHHHHHHHHHHHHHhcCC-CceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcH-HHHHHhc
Confidence            345678999999975433 58999999999999999999999999999999999999999999999999998 7888999


Q ss_pred             CCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc--ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH-HHHHH
Q psy13322        115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA--AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS-AQIIG  190 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~--~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~-~~l~~  190 (195)
                      |+.|||+|+||++++|+ |+|++++++++++.+...  .+++||++||++|++++++|++++++++.+++++++ ++|++
T Consensus       273 gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~  352 (451)
T PRK06062        273 GVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGP  352 (451)
T ss_pred             CCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            99999999999999996 999999999999988643  477899999999999999999998888999999999 58888


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       353 ~L~~  356 (451)
T PRK06062        353 GLRE  356 (451)
T ss_pred             HHHH
Confidence            8875

>PRK07481 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-38  Score=278.92  Aligned_cols=158  Identities=35%  Similarity=0.578  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ...+++.+++.|....+ +++||||+|||||++|.++++++||++|+++|++||+++|+|||++||||+|+ +|++++++
T Consensus       195 ~~~~~~~le~~i~~~~~-~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~g  272 (449)
T PRK07481        195 ARICARLLEREIAFQGP-DTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGS-WFGSRGWG  272 (449)
T ss_pred             HHHHHHHHHHHHHhcCC-CcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCch-hhHhhhcC
Confidence            45567778888864333 58999999999999999999999999999999999999999999999999998 78899999


Q ss_pred             CCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc-------ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322        116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ  187 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~-------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~  187 (195)
                      ++|||+|+||+++||+ |+|++++++++++.+...       .+++||++||++|+|++++|++++++++.+++++++++
T Consensus       273 v~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~  352 (449)
T PRK07481        273 VKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAY  352 (449)
T ss_pred             CCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            9999999999999995 999999999999988532       47889999999999999999999989999999999999


Q ss_pred             HHHHhhcC
Q psy13322        188 IIGYLRVV  195 (195)
Q Consensus       188 l~~~L~~l  195 (195)
                      |++.|+++
T Consensus       353 l~~~L~~l  360 (449)
T PRK07481        353 LLEGLQPL  360 (449)
T ss_pred             HHHHHHHH
Confidence            99999763

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-38  Score=281.10  Aligned_cols=158  Identities=30%  Similarity=0.443  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         36 SNKFYEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ...+++.+++++++... .+++||||+|||||.+|.++++++||++|+++|++||+++|+|||++||||+|+ +|+++++
T Consensus       211 ~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-~~a~e~~  289 (464)
T PRK06938        211 VRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK-MFAFEHA  289 (464)
T ss_pred             HHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcH-HHHHHhc
Confidence            34568889999875421 137999999999999999999999999999999999999999999999999998 8899999


Q ss_pred             CCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        115 GVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++|||+|+||+++||+|+|++++++++ +.+....+.+||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus       290 gv~PDiv~~gKglggG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~  368 (464)
T PRK06938        290 GIIPDVVVLSKAIGGSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQ  368 (464)
T ss_pred             CCCCCEEEeeccccCCCceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999886 666555688999999999999999999999999999999999999999976


Q ss_pred             C
Q psy13322        195 V  195 (195)
Q Consensus       195 l  195 (195)
                      +
T Consensus       369 l  369 (464)
T PRK06938        369 L  369 (464)
T ss_pred             H
Confidence            3

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=100.00  E-value=1.9e-38  Score=282.01  Aligned_cols=158  Identities=30%  Similarity=0.565  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ...++++|++++.+..+ +++||||+|||+|++|+++++++||++|+++|++||++||+|||||||||+|+ +|+++++|
T Consensus       242 ~~~~~~~le~~l~~~~~-~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~-~~a~e~~g  319 (504)
T PLN02760        242 STRLADNLENLILKEGP-ETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT-MFGCDKYN  319 (504)
T ss_pred             HHHHHHHHHHHHHhcCC-CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch-hhHHHhcC
Confidence            34556788888764433 58999999999999999999999999999999999999999999999999998 78899999


Q ss_pred             CCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322        116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ  187 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~  187 (195)
                      ++|||+|+||++++|+ |+|++++++++++.+..       ..+++||++||++|+|++++|++++++++.+++++++++
T Consensus       320 v~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~  399 (504)
T PLN02760        320 IKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPR  399 (504)
T ss_pred             CCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999999985 99999999999998864       247899999999999999999999888999999999999


Q ss_pred             HHHHhhcC
Q psy13322        188 IIGYLRVV  195 (195)
Q Consensus       188 l~~~L~~l  195 (195)
                      |++.|+++
T Consensus       400 l~~~L~~l  407 (504)
T PLN02760        400 FQDGIKAF  407 (504)
T ss_pred             HHHHHHHH
Confidence            99999763

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=3.1e-38  Score=277.69  Aligned_cols=159  Identities=26%  Similarity=0.464  Sum_probs=145.3

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc
Q psy13322         34 EASNKFYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE  112 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~  112 (195)
                      +...++++.++++|+++.  +++||||+|| +||.+|.++++++||++|+++|++||+++|+|||++||||+|+ +|+++
T Consensus       202 ~~~~~~~~~l~~~l~~~~--~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~-~fa~~  278 (453)
T PRK06943        202 DVAARALADVRRLFAERA--GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGT-FFACE  278 (453)
T ss_pred             HHHHHHHHHHHHHHHhCC--CceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcc-hhHHH
Confidence            344577899999988653  5899999999 5999999999999999999999999999999999999999998 88999


Q ss_pred             ccCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322        113 MHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS  185 (195)
Q Consensus       113 ~~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~  185 (195)
                      ++|++|||+|+||+++||+ |+|++++++++++.+..      ..+++||++||++|++++++|++++++++.+++++++
T Consensus       279 ~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G  358 (453)
T PRK06943        279 QAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKS  358 (453)
T ss_pred             hCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999995 99999999999998753      1378899999999999999999999999999999999


Q ss_pred             HHHHHHhhcC
Q psy13322        186 AQIIGYLRVV  195 (195)
Q Consensus       186 ~~l~~~L~~l  195 (195)
                      ++|++.|+++
T Consensus       359 ~~l~~~L~~l  368 (453)
T PRK06943        359 ARLRAALAPL  368 (453)
T ss_pred             HHHHHHHHHH
Confidence            9999999763

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=3.1e-38  Score=278.54  Aligned_cols=159  Identities=26%  Similarity=0.517  Sum_probs=145.9

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc
Q psy13322         34 EASNKFYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE  112 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~  112 (195)
                      +...++++.+++.+.++.  +++||||+|| |||.+|.++++++||++|+++|++||+++|+|||++||||+|+ +|+++
T Consensus       195 ~~~~~~l~~le~~~~~~~--~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~-~~a~~  271 (466)
T PRK07030        195 EHSRRMFAHMEQTLAEHH--DEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT-MFACE  271 (466)
T ss_pred             HHHHHHHHHHHHHHHhCC--CceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc-chHHH
Confidence            445677899999998653  5999999999 7999999999999999999999999999999999999999998 88999


Q ss_pred             ccCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHH
Q psy13322        113 MHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQV  184 (195)
Q Consensus       113 ~~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~  184 (195)
                      ++|++|||+|+||+++||+ |+|++++++++++.+..       ..+++||++||++|+|++++|++++++++.++++++
T Consensus       272 ~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~  351 (466)
T PRK07030        272 QAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRAL  351 (466)
T ss_pred             hcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999999995 99999999999988742       247899999999999999999999999999999999


Q ss_pred             HHHHHHHhhcC
Q psy13322        185 SAQIIGYLRVV  195 (195)
Q Consensus       185 ~~~l~~~L~~l  195 (195)
                      +++|++.|+++
T Consensus       352 G~~l~~~L~~l  362 (466)
T PRK07030        352 ARRMAEATAHL  362 (466)
T ss_pred             HHHHHHHHHHH
Confidence            99999999763

>PRK07483 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-38  Score=276.69  Aligned_cols=157  Identities=31%  Similarity=0.508  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCC-CCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQG-VSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s-~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ...+++.|++.+....+ +++||||+||||| .+|+++++++||++|+++|++||+++|+|||++||||+|+ +|+++++
T Consensus       181 ~~~~~~~l~~~~~~~~~-~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~~  258 (443)
T PRK07483        181 GQRLADELEAKILELGP-DTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT-LFACEED  258 (443)
T ss_pred             HHHHHHHHHHHHHhcCC-CceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcH-HHHHhhc
Confidence            45567888887765433 5899999999998 5799999999999999999999999999999999999998 8899999


Q ss_pred             CCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII  189 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~  189 (195)
                      +++|||+|+||+++||+ |+|++++++++++.+...    .+++||++||++|++++++|++++++++.+++++++++|+
T Consensus       259 gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~  338 (443)
T PRK07483        259 GVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLR  338 (443)
T ss_pred             CCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999996 999999999999988642    3788999999999999999999999999999999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       339 ~~L~~  343 (443)
T PRK07483        339 ARLRE  343 (443)
T ss_pred             HHHHH
Confidence            99975

>PRK12403 putative aminotransferase; Provisional

Probab=100.00  E-value=5.6e-38  Score=276.61  Aligned_cols=157  Identities=30%  Similarity=0.498  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ...++++|++.+.+..+ +++|+||+|||||++|++.++++||++|+++|++||++||+||||+||||+|+ +|+++++|
T Consensus       204 ~~~~~~~le~~~~~~~~-~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~-~~a~e~~g  281 (460)
T PRK12403        204 GRRAALQLEEKILELGA-ENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGE-WFAHEHFG  281 (460)
T ss_pred             HHHHHHHHHHHHHHhCC-CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhhhhhcC
Confidence            44567788777754433 58999999999999999999999999999999999999999999999999998 78889999


Q ss_pred             CCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHH
Q psy13322        116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK-QVSAQII  189 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~-~~~~~l~  189 (195)
                      ++|||+|+||++++|+ |+|++++++++++.+...    .+++||++||++|+|++++|++++++++.++++ +++++|+
T Consensus       282 v~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~  361 (460)
T PRK12403        282 FEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQ  361 (460)
T ss_pred             CCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            9999999999999996 999999999999988532    267899999999999999999998888999996 9999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       362 ~~L~~  366 (460)
T PRK12403        362 RCLRE  366 (460)
T ss_pred             HHHHH
Confidence            99874

>PRK07480 putative aminotransferase; Validated

Probab=100.00  E-value=5.7e-38  Score=276.26  Aligned_cols=157  Identities=32%  Similarity=0.502  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ...+++.|++.+.+..+ +++||||+|||||++|.++++++||++|+++|++||++||+|||++||||+|+ +|+++++|
T Consensus       201 ~~~~~~~l~~~~~~~~~-~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~g  278 (456)
T PRK07480        201 GLAAARQLEAKILELGA-DNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGE-WFGSQHFG  278 (456)
T ss_pred             HHHHHHHHHHHHHhcCC-CcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc-hhhhhhcC
Confidence            34456888776655444 58999999999999999999999999999999999999999999999999998 88899999


Q ss_pred             CCcchhhhccccCCCC-ceEEEEecHHHHHHhh--c--cccccCCCchHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHH
Q psy13322        116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLT--K--AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNC-KQVSAQII  189 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~--~--~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l-~~~~~~l~  189 (195)
                      ++|||+|+||+++||+ |+|++++++++++.+.  .  ..+++||++||++|+|++++|++++++++.+++ ++++++|+
T Consensus       279 v~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~  358 (456)
T PRK07480        279 IKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQ  358 (456)
T ss_pred             CCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            9999999999999996 9999999999999883  2  247899999999999999999999988999999 69999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       359 ~~l~~  363 (456)
T PRK07480        359 KRLRE  363 (456)
T ss_pred             HHHHH
Confidence            99875

>PRK07036 hypothetical protein; Provisional

Probab=100.00  E-value=1e-37  Score=275.24  Aligned_cols=158  Identities=32%  Similarity=0.537  Sum_probs=142.8

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc-c
Q psy13322         35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE-M  113 (195)
Q Consensus        35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~-~  113 (195)
                      +...+++.+++.+....+ +++||||+|||+|++|+++++++||++|+++|++||+++|+|||++||||+|+ +|+++ +
T Consensus       201 ~~~~~~~~~~~~i~~~~~-~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~  278 (466)
T PRK07036        201 FCDFLVDEFEDKILSLGA-DNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH-FFASEAV  278 (466)
T ss_pred             HHHHHHHHHHHHHHHcCC-CceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch-hhhhhhh
Confidence            345567788888775433 58999999999999999999999999999999999999999999999999998 78887 6


Q ss_pred             cCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322        114 HGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS  185 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~  185 (195)
                      +|+.|||+|+||+++||+ |+|++++++++++.+..       ..+++||++||++|++++++|++++++++.+++++++
T Consensus       279 ~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g  358 (466)
T PRK07036        279 FGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVG  358 (466)
T ss_pred             cCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            899999999999999995 99999999999998753       2367899999999999999999998889999999999


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      ++|++.|++
T Consensus       359 ~~l~~~L~~  367 (466)
T PRK07036        359 PYFEERLAS  367 (466)
T ss_pred             HHHHHHHHH
Confidence            999999975

>KOG1402|consensus

Probab=100.00  E-value=3.6e-38  Score=259.22  Aligned_cols=151  Identities=36%  Similarity=0.579  Sum_probs=145.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|+..|+.    +++|++|+|||||++|.++|+++||+++++||++|++++|+||||+|+||+|+ +++.++.+++||
T Consensus       196 ~eale~~l~~----~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk-~la~d~env~PD  270 (427)
T KOG1402|consen  196 AEALEVALKS----PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK-LLACDYENVRPD  270 (427)
T ss_pred             HHHHHHHhcC----CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc-EEEeehhhcCCC
Confidence            7889999885    48999999999999999999999999999999999999999999999999998 889998899999


Q ss_pred             hhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        120 IVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       120 i~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      ++.+||+|+|| +|++++++++++|-.+....|++||++||++|+++.|+|+++.++++.++..+.|..|+.+|+++
T Consensus       271 ivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l  347 (427)
T KOG1402|consen  271 IVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKL  347 (427)
T ss_pred             eEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999 69999999999999998888999999999999999999999999999999999999999999875

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=8.5e-38  Score=275.95  Aligned_cols=158  Identities=30%  Similarity=0.547  Sum_probs=143.1

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc
Q psy13322         34 EASNKFYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE  112 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~  112 (195)
                      +....+++.+++.+++..  +++||||+|| ++|.+|.++++++||++|+++|++||++||+|||+|||||+|+ +|+++
T Consensus       217 ~~~~~~~~~l~~~~~~~~--~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~-~~a~e  293 (472)
T PRK08742        217 DYALQAADALQALFEQSP--GEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGT-LFACE  293 (472)
T ss_pred             HHHHHHHHHHHHHHHhCC--CceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chHHH
Confidence            334567889999887543  5899999999 6999999999999999999999999999999999999999998 88999


Q ss_pred             ccCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322        113 MHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS  185 (195)
Q Consensus       113 ~~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~  185 (195)
                      ++|+.|||+|+||+++||+ |+|++++++++++.+..      ..+++||++||++|+|++++|++++++++.+++++++
T Consensus       294 ~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g  373 (472)
T PRK08742        294 QAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTA  373 (472)
T ss_pred             hcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            9999999999999999995 99999999999988752      2378899999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      ++|++.++.
T Consensus       374 ~~l~~~~~~  382 (472)
T PRK08742        374 ARMTQLAAQ  382 (472)
T ss_pred             HHHHHHHHH
Confidence            999877654

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=5.6e-38  Score=276.49  Aligned_cols=140  Identities=33%  Similarity=0.549  Sum_probs=131.3

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCce
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPM  133 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~  133 (195)
                      +++||||+|||||++|.++++++||++|+++|++||+++|+|||++||||+|+ +|+++++|++|||+|+||+++||+|+
T Consensus       224 ~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~-~~a~~~~gv~PDivt~gK~l~gG~Pi  302 (459)
T PRK06931        224 RKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGK-MFAFEHAGIEPDIIVMSKAVGGGLPL  302 (459)
T ss_pred             CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCch-HHHhhhcCCCCCEEEecccccCCcce
Confidence            47999999999999999999999999999999999999999999999999998 88999999999999999999999999


Q ss_pred             EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      |++++++++ +.+....+.+||++||++|++++++|++++++++.+++++++++|++.|+++
T Consensus       303 ~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l  363 (459)
T PRK06931        303 AVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAEL  363 (459)
T ss_pred             eeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            999988775 6665556889999999999999999999988899999999999999999763

>PRK06105 aminotransferase; Provisional

Probab=100.00  E-value=1.9e-37  Score=273.29  Aligned_cols=158  Identities=28%  Similarity=0.497  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ...+++++++++.+..+ +++||||+|||||++|+++++++||++|+++|++||+++|+||||+||||+|+ +|++++++
T Consensus       200 ~~~~~~~le~~~~~~~~-~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~-~f~~~~~~  277 (460)
T PRK06105        200 ATRLANELEALILAEGP-DTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN-MFGCETFG  277 (460)
T ss_pred             HHHHHHHHHHHHHHcCC-CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch-hhhHHhcC
Confidence            44567888988875433 58999999999999999999999999999999999999999999999999998 88899999


Q ss_pred             CCcchhhhccccCCC-CceEEEEecHHHHHHhhcc-------ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322        116 VSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ  187 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~-------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~  187 (195)
                      ++|||+|+||+++|| +|+|++++++++++.+...       .|++||++||++|++++++|++++++++.+++++++++
T Consensus       278 v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~  357 (460)
T PRK06105        278 IKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGAR  357 (460)
T ss_pred             CCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999999988 5999999999999987642       26789999999999999999999988999999999999


Q ss_pred             HHHHhhcC
Q psy13322        188 IIGYLRVV  195 (195)
Q Consensus       188 l~~~L~~l  195 (195)
                      |++.|+++
T Consensus       358 l~~~L~~l  365 (460)
T PRK06105        358 LQARLRAL  365 (460)
T ss_pred             HHHHHHHh
Confidence            99999864

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.4e-37  Score=274.09  Aligned_cols=158  Identities=33%  Similarity=0.550  Sum_probs=144.2

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         35 ASNKFYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        35 ~~~~~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      ....+++.+++.|+++.  +++||||+|| |+|.+|.++++++||++|+++|++||+++|+|||++||||+|+ +|++++
T Consensus       205 ~~~~~~~~l~~~l~~~~--~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~-~~a~~~  281 (460)
T PRK06916        205 IVKKHLEELEELLKEKH--EEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGK-MFACEH  281 (460)
T ss_pred             HHHHHHHHHHHHHHhCC--CcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCch-hhHHHh
Confidence            34567889999988653  5899999999 6999999999999999999999999999999999999999998 888999


Q ss_pred             cCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322        114 HGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS  185 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~  185 (195)
                      +|++|||+|+||+++||+ |+|++++++++++.+..       ..+++||++||++|++++++|+.++++++.+++++++
T Consensus       282 ~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g  361 (460)
T PRK06916        282 ENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKT  361 (460)
T ss_pred             cCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            999999999999999995 99999999999987742       2377899999999999999999998889999999999


Q ss_pred             HHHHHHhhcC
Q psy13322        186 AQIIGYLRVV  195 (195)
Q Consensus       186 ~~l~~~L~~l  195 (195)
                      ++|++.|+++
T Consensus       362 ~~l~~~l~~l  371 (460)
T PRK06916        362 EYVATQLEDL  371 (460)
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>PRK06148 hypothetical protein; Provisional

Probab=100.00  E-value=5.9e-37  Score=290.63  Aligned_cols=160  Identities=46%  Similarity=0.779  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         36 SNKFYEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ...+++.+++.++... ..+++||||+|||+|++|.++++++||++|+++|++||+++|+|||++||||+|+++|+++++
T Consensus       764 ~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~  843 (1013)
T PRK06148        764 GRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQ  843 (1013)
T ss_pred             HHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhc
Confidence            4556677777765321 115899999999999999999999999999999999999999999999999999657899999


Q ss_pred             CCCcchhhhccccCCCCceEEEEecHHHHHHhhccc-cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        115 GVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      |++|||+|+||++|||+|+|++++++++++.+.... +.+||++||++|+|++++|++++++++.+++++++++|++.|+
T Consensus       844 gv~PDivt~gK~lggG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~  923 (1013)
T PRK06148        844 GVVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLR  923 (1013)
T ss_pred             CCCcceeeecccccCCcceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999887653 7799999999999999999999989999999999999999997


Q ss_pred             cC
Q psy13322        194 VV  195 (195)
Q Consensus       194 ~l  195 (195)
                      ++
T Consensus       924 ~l  925 (1013)
T PRK06148        924 EL  925 (1013)
T ss_pred             HH
Confidence            63

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=4.8e-37  Score=269.71  Aligned_cols=140  Identities=39%  Similarity=0.620  Sum_probs=133.9

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCce
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPM  133 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~  133 (195)
                      +++||||+||++|++|.++++++||++|+++|++||+++|+|||++||||+|+ +|+++++|++||++|+||++++|+|+
T Consensus       218 ~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~-~fa~~~~gv~PDiv~~gK~l~~G~Pi  296 (443)
T PRK06058        218 DNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGA-WFACEHEGIVPDLITTAKGIAGGLPL  296 (443)
T ss_pred             CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChh-hhHHHhcCCCCCEEEEcccccCCCcc
Confidence            58999999999999999999999999999999999999999999999999998 77889999999999999999999999


Q ss_pred             EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++++++++.+....+.+||++||++|+|++++|+.++++++.+++++++++|++.|++
T Consensus       297 ~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~  357 (443)
T PRK06058        297 SAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRA  357 (443)
T ss_pred             EEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999988777788999999999999999999998889999999999999999975

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=100.00  E-value=6.4e-37  Score=268.36  Aligned_cols=141  Identities=35%  Similarity=0.564  Sum_probs=132.6

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCC-Cc
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FP  132 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G-~~  132 (195)
                      +++|+||+|||+|++|+++++++||++|+++|++||+++|+||||+||||+|+ +|+++++|+.|||+|+||++|+| +|
T Consensus       223 ~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~gv~PDivt~gK~lg~G~~P  301 (442)
T TIGR03372       223 DDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK-MFACEHEGVQPDILCLAKALGGGVMP  301 (442)
T ss_pred             CcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcccc-chhhhhcCCCCCeeeehhhhcCCccc
Confidence            58999999999999999999999999999999999999999999999999998 88999999999999999999999 69


Q ss_pred             eEEEEecHHHHHHhhc--cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        133 MGAVVTTTEIAQVLTK--AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       133 ~g~v~~~~~i~~~l~~--~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      +|++++++++++.+..  ..+++||++||++|+|++++|++++++++.+++++++++|++.|+++
T Consensus       302 igavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l  366 (442)
T TIGR03372       302 IGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQL  366 (442)
T ss_pred             ceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998843  34789999999999999999999988899999999999999998753

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-36  Score=267.16  Aligned_cols=160  Identities=29%  Similarity=0.509  Sum_probs=144.8

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      +....+++.+++++++....+++|+||+||++|++|+++++++||++|+++|++||+++|+||||+||||+|+ ++++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~-~~a~~~  264 (445)
T PRK08593        186 NFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK-WSSISH  264 (445)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch-HHHHHh
Confidence            3345667888888875422258999999999999999999999999999999999999999999999999998 778888


Q ss_pred             cCCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        114 HGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      +++.|||+|+||++++|+|+|++++++++++.+....+.+|+++||++|+|++++|+.++++++.+++++++++|++.|+
T Consensus       265 ~gv~pDi~t~gK~l~~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~  344 (445)
T PRK08593        265 FNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFD  344 (445)
T ss_pred             cCCCCCEeeecccccCCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998865567889999999999999999999888999999999999999997


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       345 ~  345 (445)
T PRK08593        345 Q  345 (445)
T ss_pred             H
Confidence            5

>PRK06917 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=266.89  Aligned_cols=159  Identities=29%  Similarity=0.446  Sum_probs=143.8

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGV-SGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~-~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      ...++++.++++++++.+ +++||||+||+++. +|.++++++||++|+++|++||+++|+|||++||||+|+ +|++++
T Consensus       180 ~~~~~~~~le~~i~~~~~-~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~-~~a~~~  257 (447)
T PRK06917        180 CQLACATELETAIERIGA-EHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGA-MFAMEH  257 (447)
T ss_pred             HHHHHHHHHHHHHHhcCC-CceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccc-hhhHHh
Confidence            345678889999887644 48999999999995 679999999999999999999999999999999999998 788899


Q ss_pred             cCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy13322        114 HGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI  188 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l  188 (195)
                      ++++|||+|+||++++|+ |+|++++++++++.+...    .+++||++||++|+|++++|++++++++.+++++++++|
T Consensus       258 ~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l  337 (447)
T PRK06917        258 WGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYL  337 (447)
T ss_pred             cCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            999999999999999996 999999999999988642    257899999999999999999998889999999999999


Q ss_pred             HHHhhcC
Q psy13322        189 IGYLRVV  195 (195)
Q Consensus       189 ~~~L~~l  195 (195)
                      ++.|+++
T Consensus       338 ~~~L~~l  344 (447)
T PRK06917        338 IKGLQKV  344 (447)
T ss_pred             HHHHHHH
Confidence            9999763

>PRK06541 hypothetical protein; Provisional

Probab=100.00  E-value=2.1e-36  Score=266.60  Aligned_cols=159  Identities=30%  Similarity=0.508  Sum_probs=144.3

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ....+++.+++++++..+ +++|+||+|||+|++|+++++++||++|+++|++||+++|+||||+||||+|+ +|+++++
T Consensus       202 ~~~~~~~~l~~~l~~~~~-~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~-~~a~~~~  279 (460)
T PRK06541        202 FGRWAADRIEEAIEFEGP-DTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE-MFGCERF  279 (460)
T ss_pred             HHHHHHHHHHHHHHhcCC-CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch-hhhhhhc
Confidence            345678899999886433 58999999999999999999999999999999999999999999999999998 7788889


Q ss_pred             CCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII  189 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~  189 (195)
                      +++|||+|+||++++|| |+|++++++++++.+...    .+.+|+++||+++++++++|+.++++++.+++++++++|+
T Consensus       280 gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~  359 (460)
T PRK06541        280 GYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFR  359 (460)
T ss_pred             CCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            99999999999999998 999999999999887532    2668999999999999999999988889999999999999


Q ss_pred             HHhhcC
Q psy13322        190 GYLRVV  195 (195)
Q Consensus       190 ~~L~~l  195 (195)
                      +.|+++
T Consensus       360 ~~L~~l  365 (460)
T PRK06541        360 ATLEKL  365 (460)
T ss_pred             HHHHHh
Confidence            999763

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-36  Score=267.46  Aligned_cols=156  Identities=33%  Similarity=0.502  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHHhc--CCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         36 SNKFYEQLVNAFQYN--VPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~--~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      ...+++.|++.|...  .+ +++||||+|||||.+|.++++++||++|+++|++||+++|+||||+||||+|+ +|++++
T Consensus       202 ~~~~~~~le~~l~~~~~~~-~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~  279 (457)
T PRK05639        202 INRFLDYLENYVFSHVVPP-DEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGK-WFASEW  279 (457)
T ss_pred             HHHHHHHHHHHHHHhhcCC-CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCch-HHHHHh
Confidence            445677888876532  22 58999999999999999999999999999999999999999999999999998 788899


Q ss_pred             cCCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        114 HGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      +|++|||+|+||+++||+|+|++++++++++. ....+.+|+++||++|+|++++|++++++++.+++++++++|++.|+
T Consensus       280 ~gv~PDiv~~gK~l~gG~pi~av~~~~~i~~~-~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~  358 (457)
T PRK05639        280 FEVKPDLIIFGKGVASGMGLSGVIGRKELMDL-TSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLL  358 (457)
T ss_pred             cCCCCCEEEechhhcCCCcceeEEehHHHHhh-cCCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999983 33346789999999999999999999989999999999999999997


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       359 ~  359 (457)
T PRK05639        359 E  359 (457)
T ss_pred             H
Confidence            6

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=100.00  E-value=2.5e-36  Score=264.99  Aligned_cols=158  Identities=32%  Similarity=0.520  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ....++++|++++....+ +++++||+||++|++|+++++++||++|+++|++||+++|+||||+||||+|+ +|+++++
T Consensus       196 ~~~~~~~~le~~l~~~~~-~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~  273 (442)
T PRK13360        196 HGAELADELERLVTLHDA-STIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA-PFAAQYF  273 (442)
T ss_pred             HHHHHHHHHHHHHHhcCC-CcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chhhhhc
Confidence            345678899999876543 58999999999999999999999999999999999999999999999999998 7788889


Q ss_pred             CCCcchhhhccccCCC-CceEEEEecHHHHHHhhcc-------ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSA  186 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~-------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~  186 (195)
                      ++.|||+|+||++++| +|+|++++++++++.+...       .+.+||++||++|++++++|++++++++.++++++++
T Consensus       274 gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~  353 (442)
T PRK13360        274 GVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAP  353 (442)
T ss_pred             CCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999999988 6999999999999887542       3678999999999999999999988889999999999


Q ss_pred             HHHHHhhc
Q psy13322        187 QIIGYLRV  194 (195)
Q Consensus       187 ~l~~~L~~  194 (195)
                      +|++.|++
T Consensus       354 ~l~~~l~~  361 (442)
T PRK13360        354 YWEDALHS  361 (442)
T ss_pred             HHHHHHHH
Confidence            99999875

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=100.00  E-value=6.3e-37  Score=260.63  Aligned_cols=157  Identities=36%  Similarity=0.605  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ...++.+++.+.+..+ ++++|||+|||+|++|.++++++||++|+++|++||+++|+|||++||||+|+ +|+++++++
T Consensus       160 ~~~~~~~~~~~~~~~~-~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~-~~a~~~~gv  237 (339)
T PF00202_consen  160 QACLNALEELIAALNA-DEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK-FFASEHYGV  237 (339)
T ss_dssp             HHHHHHHHHHHHHHHG-GGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS-SSGHHHHTS
T ss_pred             HHHHHHHHHHHHhhcC-CcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCC-ccceecccc
Confidence            3445556665554333 58999999999999999999999999999999999999999999999999998 889999999


Q ss_pred             CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      +|||+|+||++++|+|+|++++++++++.+....+++||++||++|++++++|+.++++++.+++++++++|++.|+++
T Consensus       238 ~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l  316 (339)
T PF00202_consen  238 DPDIVTFGKGLGGGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLREL  316 (339)
T ss_dssp             SSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccccccchhhhhhcccccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887777999999999999999999999999999999999999999999753

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=2.3e-36  Score=266.31  Aligned_cols=155  Identities=26%  Similarity=0.470  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ...+++.|++.+++.   +++||||+|||+|+ |.++++++||++|+++|++||+++|+|||++||||+|+ +|+++++|
T Consensus       213 ~~~~~~~l~~~i~~~---~~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~fa~e~~g  287 (459)
T PRK06082        213 DVHYADYLEYVIEKE---GGIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGE-WFTHQAYG  287 (459)
T ss_pred             HHHHHHHHHHHHhcC---CCEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hhHhHhhC
Confidence            456788899988753   48999999999998 47788999999999999999999999999999999998 78899999


Q ss_pred             CCcchhhhccccCCCC-ceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++|||+|+||++++|+ |+|++++++++++.+......+||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus       288 v~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~  367 (459)
T PRK06082        288 IEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLE  367 (459)
T ss_pred             CCCCEEEecccccCCCCcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999985 999999999987655322222799999999999999999998889999999999999999976


Q ss_pred             C
Q psy13322        195 V  195 (195)
Q Consensus       195 l  195 (195)
                      +
T Consensus       368 l  368 (459)
T PRK06082        368 M  368 (459)
T ss_pred             H
Confidence            3

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=2.4e-36  Score=266.05  Aligned_cols=154  Identities=35%  Similarity=0.540  Sum_probs=138.4

Q ss_pred             HHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++.+++.|++.. ..+++|+||+||+||++|+++++++||++|+++|++||+++|+||||+||||+|+ +|+++++|+.|
T Consensus       215 ~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~gv~P  293 (459)
T PRK11522        215 IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK-MFACEHENVQP  293 (459)
T ss_pred             HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccch-hhhhhccCCCC
Confidence            355666665321 1158999999999999999999999999999999999999999999999999998 88999999999


Q ss_pred             chhhhccccCCC-CceEEEEecHHHHHHhhc--cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANG-FPMGAVVTTTEIAQVLTK--AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G-~~~g~v~~~~~i~~~l~~--~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ||+|+||++|+| +|+|++++++++++.+..  ..+++||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus       294 Divt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~  372 (459)
T PRK11522        294 DILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQ  372 (459)
T ss_pred             CEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            999999999999 599999999999887743  3478999999999999999999998889999999999999999975

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=100.00  E-value=2.4e-36  Score=265.15  Aligned_cols=139  Identities=34%  Similarity=0.585  Sum_probs=130.2

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCce
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPM  133 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~  133 (195)
                      +++++||+||++|++|.++++++||++|+++|++||+++|+|||++||||+|+ +|++++++++|||+|+||++++|+|+
T Consensus       205 ~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~gv~PDiv~~gK~l~~G~Pi  283 (442)
T TIGR00709       205 DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAGIEPDFVVMSKAVGGGLPL  283 (442)
T ss_pred             CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHHcCCCCcEEEEcccccCCccc
Confidence            48999999999999999999999999999999999999999999999999998 88888899999999999999999999


Q ss_pred             EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+++++++ ++.+....+.+||++||++|+|++++|+.++++++.+++++++++|++.|++
T Consensus       284 gav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~  343 (442)
T TIGR00709       284 AVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDD  343 (442)
T ss_pred             EEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            99999988 4655444578999999999999999999998889999999999999999975

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=4.4e-36  Score=262.87  Aligned_cols=158  Identities=40%  Similarity=0.621  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ..+++++|++++++....+++|+||+|||+|++|+++++++||++|+++|++||++||+||||+||||+|+ ++++++++
T Consensus       188 ~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~-~~~~~~~g  266 (433)
T PRK08117        188 FLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE-WFAAQTFG  266 (433)
T ss_pred             HHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc-chhHhhcC
Confidence            34578889998875322258999999999999999999999999999999999999999999999999997 66778889


Q ss_pred             CCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.||++|+||++++|+|+|++++++++++.+....+.+||++||++|+|++++|+.++++++.+++++++++|++.|++
T Consensus       267 v~pDi~t~sK~lg~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~  345 (433)
T PRK08117        267 VVPDIMTIAKGIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEV  345 (433)
T ss_pred             CCCCEeehhhhccCCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988766688999999999999999999998788999999999999998875

>PRK06149 hypothetical protein; Provisional

Probab=100.00  E-value=4.1e-36  Score=284.35  Aligned_cols=158  Identities=39%  Similarity=0.738  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         38 KFYEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        38 ~~~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ++.+++++.++... ..+++|+||+|||+|++|.++++++||++|+++|++||+++|+||||+||||+|+.+|+++++|+
T Consensus       726 ~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv  805 (972)
T PRK06149        726 DYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGV  805 (972)
T ss_pred             HHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCC
Confidence            44555555554311 11589999999999999999999999999999999999999999999999999975678999999


Q ss_pred             CcchhhhccccCCCCceEEEEecHHHHHHhhc-cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTK-AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~-~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      .|||+|+||++|||+|+|++++++++++.+.. ..+.+|+++||++|++++++|++++++++.+++++++++|++.|+++
T Consensus       806 ~PDivt~gK~lg~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l  885 (972)
T PRK06149        806 VPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEAL  885 (972)
T ss_pred             CCCEEEecccccCCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998875 23567889999999999999999998999999999999999999763

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=100.00  E-value=7.7e-36  Score=262.08  Aligned_cols=160  Identities=33%  Similarity=0.534  Sum_probs=144.2

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      +....++++|+++++...+ +++|+||+|||+|++|++.++++||++|+++|++||+++|+||||+||||+|+ +|++++
T Consensus       198 ~~~~~~~~~l~~~i~~~~~-~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~~~~~  275 (445)
T PRK09221        198 EHGAELADDLERLVALHDA-STIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA-AFAAER  275 (445)
T ss_pred             HHHHHHHHHHHHHHHhcCC-CcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCch-hhHHHh
Confidence            3345567889998886543 58999999999999999999999999999999999999999999999999998 788899


Q ss_pred             cCCCcchhhhccccCCC-CceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322        114 HGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS  185 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~  185 (195)
                      +++.|||+|+||++++| +|+|++++++++++.+..       ..+++||++||+++++++++|+.++++++.+++++++
T Consensus       276 ~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g  355 (445)
T PRK09221        276 FGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELA  355 (445)
T ss_pred             cCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999999988 699999999999998753       1367899999999999999999998888999999999


Q ss_pred             HHHHHHhhcC
Q psy13322        186 AQIIGYLRVV  195 (195)
Q Consensus       186 ~~l~~~L~~l  195 (195)
                      ++|++.|+++
T Consensus       356 ~~l~~~l~~l  365 (445)
T PRK09221        356 PYFEDAVHSL  365 (445)
T ss_pred             HHHHHHHHhh
Confidence            9999998753

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=4.5e-36  Score=262.49  Aligned_cols=151  Identities=28%  Similarity=0.338  Sum_probs=138.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.|+++.  +++|+||+||+||++|+++++++||++|+++|++||+++|+||||+|| |+|. +++++++|++||
T Consensus       187 ~~~l~~~l~~~~--~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~-~~a~~~~gv~PD  262 (428)
T PRK12389        187 IEALKEALDKWG--DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMY-GGAQDLLGVEPD  262 (428)
T ss_pred             HHHHHHHHHhcC--CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCc-chhhHHhCCCCC
Confidence            578888887654  589999999999999999999999999999999999999999999999 8886 556678899999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhc---cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTK---AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~---~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+|+||++++|+|+|++++++++++.+..   ..+.+||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus       263 ivt~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~  340 (428)
T PRK12389        263 LTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILE  340 (428)
T ss_pred             eeeechhhcCCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998853   2377899999999999999999998888999999999999999975

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=100.00  E-value=1.2e-35  Score=262.13  Aligned_cols=152  Identities=28%  Similarity=0.376  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++.|+++|+++.  +++|+||+||++|++|+++++++||++|+++|++||++||+||||+|| |+|. +++.+++|+.|
T Consensus       232 d~~~l~~~l~~~~--~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~-~ga~~~~gv~P  307 (474)
T PLN02482        232 DLEAVKKLFEANK--GEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAY-GGAQEYFGITP  307 (474)
T ss_pred             ChHHHHHHHHhCC--CceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCc-chHhHHhCCCC
Confidence            3678888887653  589999999999999999999999999999999999999999999999 9987 66778899999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++|+||++|||+|+|++++++++++.+...   .+.+||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus       308 Di~t~gK~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~  386 (474)
T PLN02482        308 DLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILE  386 (474)
T ss_pred             CEEEecchhhCCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988632   377899999999999999999998888999999999999999975

>KOG1401|consensus

Probab=100.00  E-value=2.7e-35  Score=247.97  Aligned_cols=154  Identities=35%  Similarity=0.516  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      ++..+|+++++.+.  +.|+|||+||+||.||.++++++||..|+.+|+++|+++|+|||++||||+|. .|++++++++
T Consensus       191 nd~t~l~k~~~~h~--~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~-~~a~e~~~~~  267 (433)
T KOG1401|consen  191 NDSTALEKLFESHK--GEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGY-GWAQEYFGVT  267 (433)
T ss_pred             CCHHHHHHHHHhCC--CceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccch-HHHHHHhCcC
Confidence            34799999999885  68999999999999999999999999999999999999999999999999998 7899999999


Q ss_pred             cchhhhccccCCCCceEEEEecHHHHHHhhccc---cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA---HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       118 pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~---~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |||+|++|.++||+|+|++++++++++.+....   |+.||++||++|.++..+|+.+.+++.++++.+.++.|++.|.+
T Consensus       268 PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e  347 (433)
T KOG1401|consen  268 PDITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDE  347 (433)
T ss_pred             CcceeehhhccCCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998765   59999999999999999999999999999999999999998864

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=4.7e-35  Score=256.89  Aligned_cols=157  Identities=37%  Similarity=0.585  Sum_probs=139.3

Q ss_pred             hHHHHHHHHHH-HHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         35 ASNKFYEQLVN-AFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        35 ~~~~~~~~l~~-~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      ....+++.+++ ++++....+++++||+||++|++|+++++++||++|+++|++||+++|+||||+||||+|+ ++++++
T Consensus       200 ~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~-~~a~~~  278 (441)
T PRK05769        200 CGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK-MFAIEH  278 (441)
T ss_pred             HHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-eehhhc
Confidence            34456788888 4443211258999999999999999999999999999999999999999999999999997 778888


Q ss_pred             cCCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        114 HGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      +++.||++++||++++|+|+|++++++++++.+ ...+++||++||++|++++++|+++++ ++.+++++++++|++.|+
T Consensus       279 ~gv~pDivt~~K~l~~G~p~gav~~~~~i~~~~-~~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~  356 (441)
T PRK05769        279 FGVEPDIITLAKAIAGGLPLGAVIGRAELMFLP-PGSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKELK  356 (441)
T ss_pred             cCCCCCEEEEcccccCCcccEEEEEehhhhhcC-CCCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988643 345888999999999999999999988 999999999999999997


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       357 ~  357 (441)
T PRK05769        357 E  357 (441)
T ss_pred             H
Confidence            5

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=100.00  E-value=4.9e-35  Score=255.40  Aligned_cols=158  Identities=30%  Similarity=0.485  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ...+++.+++.+......+++||||+|||+|++|.++++++|+++|+++|++||++||+|||++||||+|+ ++++++++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~~~~~  256 (420)
T TIGR00700       178 TDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFACEHEG  256 (420)
T ss_pred             HHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch-hHHHhhcC
Confidence            33567888888752211258999999999999999999999999999999999999999999999999997 77888889


Q ss_pred             CCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.||++++||++++|||+|++++++++++.+....+.+|+++||++|++++++|+.++++++.+++++.++++++.|++
T Consensus       257 ~~pDi~~lsK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~  335 (420)
T TIGR00700       257 PEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTT  335 (420)
T ss_pred             CCCCEEEeeccccCCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988766688999999999999999999998888999999999999999875

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=3.9e-35  Score=256.52  Aligned_cols=156  Identities=33%  Similarity=0.524  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ...+++.|++.|+.+.  +++||||+||+ ||.+|.++++++||++|+++|++||+++|+||||+||||+|+ +|+++++
T Consensus       189 ~~~~l~~l~~~i~~~~--~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~  265 (429)
T PRK06173        189 NDEAIEPLQDLLEQKG--DEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGK-LFALEHA  265 (429)
T ss_pred             HHHHHHHHHHHHHhCC--CcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCc-chHHHhc
Confidence            4567888999997553  58999999997 999999999999999999999999999999999999999998 7788889


Q ss_pred             CCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-----cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-----AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI  188 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-----~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l  188 (195)
                      |+.|||+|+||+++||+ |++++++++++++.+..     ..+++||++||++|++++++|++++++++.+++++++++|
T Consensus       266 gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l  345 (429)
T PRK06173        266 GVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQL  345 (429)
T ss_pred             CCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999999999995 99999999999998853     2377899999999999999999998888999999999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      ++.|++
T Consensus       346 ~~~L~~  351 (429)
T PRK06173        346 KQELAP  351 (429)
T ss_pred             HHHHHH
Confidence            999874

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=5.7e-35  Score=255.65  Aligned_cols=152  Identities=21%  Similarity=0.277  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|++.|+++.  +++++||+||++|++|+++++++||++|+++|++||+++|+||||+|| |+|. +++++++++.|
T Consensus       187 d~~~l~~~l~~~~--~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~-~ga~~~~gv~P  262 (433)
T PRK00615        187 DFQIFQTVMNSLG--HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQ-GGAAAIYHVKP  262 (433)
T ss_pred             CHHHHHHHHHhcC--CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccH-hHHHHhcCCCC
Confidence            3678888887654  589999999999999999999999999999999999999999999999 8997 67788899999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ||+|+||++|||+|+|++++++++++.+...   .+.+||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus       263 Di~~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~  341 (433)
T PRK00615        263 DITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEE  341 (433)
T ss_pred             CeEEEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988642   266899999999999999999998888999999999999888865

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=100.00  E-value=6.3e-35  Score=255.10  Aligned_cols=158  Identities=30%  Similarity=0.524  Sum_probs=143.8

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         35 ASNKFYEQLVNAFQYNVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      +..++++++++.|++..  +++++||+||+ ++.+|+++++++||++|+++|++||++||+||||+||||+|+ +|++++
T Consensus       186 ~~~~d~~~l~~~l~~~~--~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~-~fa~~~  262 (428)
T PRK07986        186 WDERDIAPFARLMAAHR--HEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK-LFACEH  262 (428)
T ss_pred             hHHHHHHHHHHHHHhCC--CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCC-eeeecc
Confidence            34577889999997653  58999999996 889999999999999999999999999999999999999998 788899


Q ss_pred             cCCCcchhhhccccCCC-CceEEEEecHHHHHHhhcc-----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322        114 HGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ  187 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~-----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~  187 (195)
                      +|++|||+|+||+++|| +|+|++++++++++.+...     .+++||++||++|+|++++|+.++++++++++++++++
T Consensus       263 ~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~  342 (428)
T PRK07986        263 AGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQ  342 (428)
T ss_pred             cCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999 4999999999999998653     27889999999999999999999888999999999999


Q ss_pred             HHHHhhcC
Q psy13322        188 IIGYLRVV  195 (195)
Q Consensus       188 l~~~L~~l  195 (195)
                      |++.|+++
T Consensus       343 l~~~l~~l  350 (428)
T PRK07986        343 LREELAPL  350 (428)
T ss_pred             HHHHHHHH
Confidence            99998753

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=100.00  E-value=8.6e-35  Score=252.13  Aligned_cols=149  Identities=41%  Similarity=0.621  Sum_probs=138.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.|.     +++++||+||+++++|.++++++||++|+++|++||+++|+||||+|+||+|. +++++++++.||
T Consensus       169 ~~~l~~~l~-----~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~-~~a~~~~gv~pD  242 (397)
T TIGR03246       169 LAAAKALIS-----DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPD  242 (397)
T ss_pred             HHHHHHHhc-----cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc-chhhhhcCCCCC
Confidence            677888775     37999999999999999999999999999999999999999999999999998 677788899999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++||++++|||+|++++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++|++.|++
T Consensus       243 i~t~~K~lggG~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~  317 (397)
T TIGR03246       243 ILTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEK  317 (397)
T ss_pred             EEEeehhhhCCcceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998766688899999999999999999988788999999999999999876

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-34  Score=252.36  Aligned_cols=157  Identities=32%  Similarity=0.508  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ..+++.+++.+++....+++|+||+||+||++|..+++++||++|+++|++||++||+||||+||||+|+ +++++++++
T Consensus       180 ~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~-~~~~~~~~~  258 (421)
T PRK06777        180 EEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK-LFAMEYYDV  258 (421)
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCc-hhhhhhcCC
Confidence            4567888888875211258999999999999999999999999999999999999999999999999997 778888899


Q ss_pred             CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .||++++||++++|||+|++++++++++.+....+.+||++||++|++++++|+.++++++.+++++++++|++.|++
T Consensus       259 ~pDiv~~sK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~  336 (421)
T PRK06777        259 KPDLITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEK  336 (421)
T ss_pred             CCCEEeeehhhcCCCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988777788999999999999999999998889999999999999999976

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.3e-34  Score=252.82  Aligned_cols=153  Identities=30%  Similarity=0.525  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ...+++.+++++.     +++||||+||+ ||.+|.++++++||++|+++|++||+++|+||||+||||+|+ +|+++++
T Consensus       186 ~~~~~~~~~~~~~-----~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~  259 (422)
T PRK05630        186 ISEYLRSLELLID-----ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGE-LFATLAA  259 (422)
T ss_pred             HHHHHHHHHHHHh-----hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCch-hhHHHhc
Confidence            3456677777665     48999999996 999999999999999999999999999999999999999998 8888999


Q ss_pred             CCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc------ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ  187 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~  187 (195)
                      ++.|||+|+||+++||+ |+|++++++++++.+...      .+++||++||++|++++++|+.++++++.+++++++++
T Consensus       260 gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~  339 (422)
T PRK05630        260 GVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAE  339 (422)
T ss_pred             CCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            99999999999999995 999999999999988532      37889999999999999999999888899999999999


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      |++.|+.
T Consensus       340 l~~~L~~  346 (422)
T PRK05630        340 LIAGLSP  346 (422)
T ss_pred             HHHHHHH
Confidence            9998864

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=7.1e-34  Score=249.56  Aligned_cols=157  Identities=32%  Similarity=0.523  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ..+++.++++|++....+++||||+||+++++|.+.++++||++|+++|++||+++|+||||+||||+|+ +++++++++
T Consensus       186 ~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~-~~a~~~~~~  264 (443)
T PRK08360        186 MECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK-WFAIEHFGV  264 (443)
T ss_pred             HHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-chhhhhcCC
Confidence            3567778888875322258999999999999999999999999999999999999999999999999997 677777899


Q ss_pred             CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .||++++||++++|||+|++++++++++.+....+.+|+++||++|++++++|+.++++++.+++++++++|++.|++
T Consensus       265 ~pDiitlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~  342 (443)
T PRK08360        265 EPDIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEE  342 (443)
T ss_pred             CCCEEEecccccCCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998766688899999999999999999998888999999999999999875

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=4.4e-34  Score=249.75  Aligned_cols=158  Identities=37%  Similarity=0.565  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ..+++.+++++++....+++++||+||++|++|.++++++|+++|+++|++||+++|+||||+||||+|+ +++++++++
T Consensus       180 ~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~a~~~~gv  258 (425)
T PRK07495        180 EQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK-LFAMEHHEV  258 (425)
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC-ceeecccCC
Confidence            3567888888874322258999999999999999999999999999999999999999999999999998 778888899


Q ss_pred             CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      .|||+++||++++|+|+|++++++++++.+....+.+||++||++|++++++|+.++++++.+++++++++|+++|+++
T Consensus       259 ~pDi~tlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l  337 (425)
T PRK07495        259 AADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASL  337 (425)
T ss_pred             CCCEEeehhhhcCCccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887766889999999999999999999988899999999999999999753

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=2.2e-34  Score=249.55  Aligned_cols=149  Identities=28%  Similarity=0.469  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|++.+.     +++++||+||++|++|+++++++||++|+++|++||+++|+||||+||||+|+ +|+++++++.|
T Consensus       168 d~~~l~~~l~-----~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~-~~a~~~~gv~P  241 (395)
T PRK03715        168 DIASVEKLIT-----DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT-LFAYELSGIEP  241 (395)
T ss_pred             hHHHHHHHcC-----CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcc-hhhHhhcCCCC
Confidence            4677777774     37899999999999999999999999999999999999999999999999998 77889999999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ||+|+||++++|+|+|+++++++++. +....+.+||++||++|++++++|++++++++.+++++++++|++.|++
T Consensus       242 Di~t~gK~lg~G~p~~av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~  316 (395)
T PRK03715        242 DIMTLGKGIGGGVPLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLE  316 (395)
T ss_pred             ceeeehhhhhCCcceEEEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999863 3333478899999999999999999998889999999999999999975

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=100.00  E-value=1e-33  Score=249.20  Aligned_cols=158  Identities=29%  Similarity=0.524  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ...+++.+++.+.+....+++||||+||++|.+|.++++++||++|+++|++||++||+|||++||||+|. ++++++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~-~~a~~~~~  278 (451)
T PRK06918        200 DDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGK-YFAIEHFD  278 (451)
T ss_pred             HHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCc-eehhHhcC
Confidence            34456667776643211258999999999999999999999999999999999999999999999999997 77888889


Q ss_pred             CCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.||++++||++++|||+|++++++++++.+....+.+|+++||++|++++++|+.++++++.+++++.+++++++|++
T Consensus       279 v~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~  357 (451)
T PRK06918        279 VVPDLITVSKSLGAGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEE  357 (451)
T ss_pred             CCCCEEeeehhhcCCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988766688999999999999999999998888999999999999998875

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=100.00  E-value=5e-34  Score=249.42  Aligned_cols=155  Identities=30%  Similarity=0.491  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         38 KFYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      .++++|+++|+++... +++|+||+|||||++|+++++++||++|+++|++||++||+||||+||||+|+ +++++++++
T Consensus       180 ~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-~~~~~~~~v  258 (425)
T PRK09264        180 DTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT-FFSFERAGI  258 (425)
T ss_pred             hHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccH-HHHHhhcCC
Confidence            4678899998764321 47999999999999999999999999999999999999999999999999997 778888999


Q ss_pred             CcchhhhccccCC-CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        117 SPDIVTMAKGIAN-GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVL-DVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       117 ~pdi~~~sK~l~~-G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal-~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .|||+|+||++++ |+|+|++++++++. .+....+.+||++||+++++++++| +.++++++.+++++++++|++.|++
T Consensus       259 ~PDi~t~~K~l~~~G~pigav~~~~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~  337 (425)
T PRK09264        259 TPDIVTLSKSISGYGLPMALVLIKPELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEE  337 (425)
T ss_pred             CCCEEEeccccCCCccceEEEEEchhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997 99999999999874 5544457889999999999999999 5666778999999999999998865

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=8.8e-34  Score=262.41  Aligned_cols=156  Identities=25%  Similarity=0.345  Sum_probs=134.5

Q ss_pred             hHHHHHHHHHHHHHh----cCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcc
Q psy13322         35 ASNKFYEQLVNAFQY----NVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYW  109 (195)
Q Consensus        35 ~~~~~~~~l~~~l~~----~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~  109 (195)
                      ....+++.+++.|++    ..+ +++||||+||+ +|.+|+++++++|+++|+++|++||++||+|||++||||+|+ +|
T Consensus       561 ~~~~~~~~le~~l~~~~~~~~~-~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~-~f  638 (817)
T PLN02974        561 LAKAYRSYIEQQLDEYEASAKN-GHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGV-ES  638 (817)
T ss_pred             hhHHHHHHHHHHHHhhccccCC-CCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccc-hh
Confidence            345677889988875    222 58999999995 899999999999999999999999999999999999999998 88


Q ss_pred             cccccCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc------cccccCCCchHHHHHHHHHHHHhhcchhHH----
Q psy13322        110 GFEMHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK------AAHFNTFGGNPVGCVIASTVLDVIKDEELQ----  178 (195)
Q Consensus       110 ~~~~~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~----  178 (195)
                      +++++|++|||+|+||+++||+ |+|++++++++++.+..      ..|++||++||++|+||+++|++++++++.    
T Consensus       639 a~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~  718 (817)
T PLN02974        639 AWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLI  718 (817)
T ss_pred             hHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHH
Confidence            9999999999999999999995 99999999999998852      238899999999999999999999876444    


Q ss_pred             HHHHHHHHHHHHHh
Q psy13322        179 YNCKQVSAQIIGYL  192 (195)
Q Consensus       179 ~~l~~~~~~l~~~L  192 (195)
                      ++.++.++++.+.|
T Consensus       719 ~~~~~l~~~l~~~l  732 (817)
T PLN02974        719 PPGSRLRELWDEEL  732 (817)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44455555555555

>KOG1403|consensus

Probab=100.00  E-value=1.3e-34  Score=236.24  Aligned_cols=179  Identities=39%  Similarity=0.637  Sum_probs=159.8

Q ss_pred             CCCCCCCCCCCCCCcCCCCcccccccCCCCccchhHHHHHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHH
Q psy13322          1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLR   79 (195)
Q Consensus         1 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~   79 (195)
                      |-||.||++|++...++.               +-...|.+.+++++++...+ ..+||+|.|+.||-||.++||.+|++
T Consensus       169 PcPDvyrGK~r~~~~~~a---------------~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq  233 (452)
T KOG1403|consen  169 PCPDVYRGKFRDKMYPDA---------------DMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQ  233 (452)
T ss_pred             CCccccccccccccCCcc---------------cchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHH
Confidence            458999999997333322               22357788888888764322 47999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCceEEEEecHHHHHHhhccc--cccCCCc
Q psy13322         80 RAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGG  157 (195)
Q Consensus        80 ~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~  157 (195)
                      ++.+..+.+|.+.|.|||+.||||.|+++|+++.+++.|||+|+||.+|+|.|++++++++++.+.|....  +.+||++
T Consensus       234 ~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGhPVa~VattkeIA~Af~atgv~YFNTyGG  313 (452)
T KOG1403|consen  234 AVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGG  313 (452)
T ss_pred             HHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCCCeeeEEeccHHHHHHhccccceehhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999997643  7889999


Q ss_pred             hHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        158 NPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       158 ~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ||++||+++++++++++++++++.++.|++|...|++
T Consensus       314 nPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~  350 (452)
T KOG1403|consen  314 NPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRR  350 (452)
T ss_pred             CchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998875

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=2.5e-33  Score=240.00  Aligned_cols=152  Identities=30%  Similarity=0.372  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++.+++++++.+  +++||||+|||+|+.|.+.|.++||++|+++|++||++||+|||+||| |... ..+...+|++|
T Consensus       186 D~~al~~~~~~~g--~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGF-R~~~-gGaq~~~gi~P  261 (432)
T COG0001         186 DLEALEEAFEEYG--DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVAL-GGAQGYYGVEP  261 (432)
T ss_pred             CHHHHHHHHHHcC--CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhc-ccCC-cccccccCcCc
Confidence            4799999999875  699999999999999999999999999999999999999999999999 5553 33557789999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhccc---cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA---HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~---~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+.|+||.+|||+|+|++.+++++|+.+....   +..|+++||++++|++++|+.+.+ +...+++.+.+++|++.|++
T Consensus       262 DlttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~  341 (432)
T COG0001         262 DLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRA  341 (432)
T ss_pred             chhhhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999886643   788999999999999999999976 56899999999999999975

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=100.00  E-value=2.3e-33  Score=243.88  Aligned_cols=149  Identities=38%  Similarity=0.600  Sum_probs=137.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     +++++||+||+++++|.++++++||++|+++|++||++||+||||+||||+|+ +++++++++.||
T Consensus       173 ~~~l~~~l~-----~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~-~~~~~~~~v~pD  246 (406)
T PRK12381        173 LNSASALID-----DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPD  246 (406)
T ss_pred             HHHHHHhcc-----CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc-hhhhHhhCCCCC
Confidence            567777774     47999999999999999999999999999999999999999999999999997 667778899999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++||++++|||+|++++++++++.+....+.+||++||+++++++++|+.++++++++++++++++|.+.|++
T Consensus       247 i~t~sK~l~gG~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~  321 (406)
T PRK12381        247 VLTTAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNT  321 (406)
T ss_pred             EEEehhhhhCCCceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998776688899999999999999999998788999999999999999875

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=100.00  E-value=3.2e-33  Score=244.10  Aligned_cols=158  Identities=28%  Similarity=0.463  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ..++++.+++++++....+++++||+||+++++|..+++++|+++|+++|++||++||+|||++||||+|+ ++++++++
T Consensus       179 ~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~~  257 (421)
T PRK09792        179 TQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGK-LFAMDHYA  257 (421)
T ss_pred             HHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHhcC
Confidence            34678899998875322258999999999999999999999999999999999999999999999999997 77888889


Q ss_pred             CCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.|||++|||++++|+|+|++++++++++.+....+.+||++||++|+|++++++.++++++.++++++++++++.|++
T Consensus       258 ~~pDi~t~gK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~  336 (421)
T PRK09792        258 DKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLID  336 (421)
T ss_pred             CCCcEEEeehhhcCCCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988766688999999999999999999998888999999999999998875

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=8.7e-33  Score=241.73  Aligned_cols=157  Identities=32%  Similarity=0.555  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ..+++++++++++++.  +++++||+||+ ++.+|.++++++||++|+++|++||+++|+||||+||||+|+ +|+++++
T Consensus       190 ~~~~~~~l~~~l~~~~--~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~-~~~~~~~  266 (427)
T TIGR00508       190 NEEAITPLAKLMELHS--DEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK-LFACEHA  266 (427)
T ss_pred             HHHHHHHHHHHHHhcC--CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-cchhhhc
Confidence            4567889999998663  58999999997 888999999999999999999999999999999999999997 7788889


Q ss_pred             CCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc-----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI  188 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~-----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l  188 (195)
                      ++.|||+++||+++||+ |++++++++++++.+...     .+++||++||+++++++++|++++++++.+++++++++|
T Consensus       267 ~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l  346 (427)
T TIGR00508       267 GVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQL  346 (427)
T ss_pred             CCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999999999996 999999999999988753     267899999999999999999998888999999999999


Q ss_pred             HHHhhcC
Q psy13322        189 IGYLRVV  195 (195)
Q Consensus       189 ~~~L~~l  195 (195)
                      ++.|+++
T Consensus       347 ~~~L~~l  353 (427)
T TIGR00508       347 KRELSPL  353 (427)
T ss_pred             HHHHHHh
Confidence            9999753

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=100.00  E-value=6.7e-33  Score=241.48  Aligned_cols=155  Identities=28%  Similarity=0.465  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         38 KFYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ++++.++++++++..+ +++|+||+||+||++|.++++++||++|+++|++||++||+|||++||||+|+ +|+++++++
T Consensus       176 ~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~~~~~v  254 (412)
T TIGR02407       176 DTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGT-FFSFEPAGI  254 (412)
T ss_pred             hHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hHHhcccCC
Confidence            5678899988765321 47999999999999999999999999999999999999999999999999998 778888999


Q ss_pred             CcchhhhccccCC-CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHhhc
Q psy13322        117 SPDIVTMAKGIAN-GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV-IKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       117 ~pdi~~~sK~l~~-G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~-~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .|||+++||++++ |+|+|++++++++ +.+....+.+||++||++|+++.++|+. ++++++.+++++++++|+++|+.
T Consensus       255 ~PDi~~~~K~lg~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~  333 (412)
T TIGR02407       255 EPDIVCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDR  333 (412)
T ss_pred             CCCEEEechhccCCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997 9999999999887 6555455889999999999999999995 77788999999999999998874

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=100.00  E-value=5.8e-33  Score=244.27  Aligned_cols=151  Identities=28%  Similarity=0.435  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ..++++.|+++|+++.  +++||||+|||+|++|+++++++||++|+++|++||++||+|||++||||+|. +|+++++|
T Consensus       234 ~~~~l~~l~~~l~~~~--~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~-~fa~e~~g  310 (464)
T TIGR00699       234 EQRCLEEVEDLIKKWH--KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGK-FWAHEHWN  310 (464)
T ss_pred             HHHHHHHHHHHHHhcC--CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcc-hhHHHhcC
Confidence            4567899999998653  58999999999999999999999999999999999999999999999999998 88999999


Q ss_pred             CC--cchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322        116 VS--PDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       116 ~~--pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L  192 (195)
                      +.  |||+|+||+++ +|+.    ++++ .........+++||++||++|++++++|+.++++++.+++++++++|++.|
T Consensus       311 v~~~PDi~t~gK~lg~gG~~----~~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L  385 (464)
T TIGR00699       311 LDDPPDMVTFSKKFQTAGYF----FHDP-AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGL  385 (464)
T ss_pred             CCCCCCEEEehhhhccCCcc----ccch-hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            97  99999999996 6753    2332 211111234788999999999999999999998999999999999999999


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       386 ~~  387 (464)
T TIGR00699       386 ED  387 (464)
T ss_pred             HH
Confidence            75

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.5e-32  Score=239.98  Aligned_cols=157  Identities=30%  Similarity=0.507  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ...+++.|++.+.++.  +++++||+|| +++.+|.++++++||++|+++|++||++||+||||+||||+|+ +++++++
T Consensus       182 ~~~~~~~l~~~l~~~~--~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~  258 (423)
T PRK05964        182 EQATLDALEALLEKHA--GEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGT-LFACEQA  258 (423)
T ss_pred             HHHHHHHHHHHHHhCC--CcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc-hhHHHhc
Confidence            3456899999997653  5899999999 6999999999999999999999999999999999999999997 7778888


Q ss_pred             CCCcchhhhccccCCC-CceEEEEecHHHHHHhhcc------ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ  187 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~  187 (195)
                      ++.||++++||++++| +|+|++++++++++.+...      .+++||++||++++|++++|+.++++++.+++++++++
T Consensus       259 ~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~  338 (423)
T PRK05964        259 GVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAG  338 (423)
T ss_pred             CCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999999988 7999999999999988532      36788999999999999999999888899999999999


Q ss_pred             HHHHhhcC
Q psy13322        188 IIGYLRVV  195 (195)
Q Consensus       188 l~~~L~~l  195 (195)
                      |++.|+++
T Consensus       339 l~~~l~~l  346 (423)
T PRK05964        339 LAEGLEPF  346 (423)
T ss_pred             HHHHHHhh
Confidence            99998753

>PRK07046 aminotransferase; Validated

Probab=100.00  E-value=1.2e-32  Score=242.27  Aligned_cols=149  Identities=22%  Similarity=0.237  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++.+++++.   + +++||||+||++|++|.++++++||++|+++|++||+++|+|||++ | |.|.+ ...+++|++|
T Consensus       206 d~~~l~~~l~---~-~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-f-r~g~G-g~~~~~gv~P  278 (453)
T PRK07046        206 DLAALEAALA---D-GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-I-SSGPG-GYTRAHGLEP  278 (453)
T ss_pred             CHHHHHHHhC---C-CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-C-ccCCc-chhHHhCCCc
Confidence            3678888774   2 5899999999999999999999999999999999999999999999 5 45542 2346679999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhc---------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTK---------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII  189 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~---------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~  189 (195)
                      ||+|+||++|||+|+|++++++++++.+..         ..+++||++||++|+|++++|++++++++.+++++++++|+
T Consensus       279 Di~t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~  358 (453)
T PRK07046        279 DFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLA  358 (453)
T ss_pred             cceeehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            999999999999999999999999998853         12678999999999999999999988889999999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       359 ~~L~~  363 (453)
T PRK07046        359 AGLRA  363 (453)
T ss_pred             HHHHH
Confidence            99975

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=1.8e-32  Score=239.61  Aligned_cols=151  Identities=28%  Similarity=0.368  Sum_probs=136.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.++++.  +++++||+||++|++|+++++++||++|+++|++||+++|+||||+|+ |+|. ++..+++++.||
T Consensus       184 ~~~l~~~i~~~~--~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~-~~~~~~~~~~pD  259 (426)
T PRK00062        184 LEAVEELFEEYG--DEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVAL-GGAQGYYGVTPD  259 (426)
T ss_pred             HHHHHHHHHhCC--CcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCC-ccHHHHhCCCcc
Confidence            678888887653  589999999999999999999999999999999999999999999999 8886 556677899999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++||++++|||+|++++++++++.+...   .+.+|+++||+++++++++|+.++++++.++++++++++++.|++
T Consensus       260 i~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~  337 (426)
T PRK00062        260 LTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKE  337 (426)
T ss_pred             hHhhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988632   356788999999999999999998778999999999999998874

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.98  E-value=7.3e-32  Score=235.28  Aligned_cols=152  Identities=28%  Similarity=0.361  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|++++.++.  +++++||+||++|++|.+.++++|+++|+++|++||+++|+||||+|| |+|. .+.++++++.|
T Consensus       181 d~~~l~~~i~~~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~-~~~~~~~~~~p  256 (423)
T TIGR00713       181 DLEALEEVFEEYG--EEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVAL-GGAQEYFGVEP  256 (423)
T ss_pred             CHHHHHHHHHHcC--CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCc-chhHHHhCCCc
Confidence            3688888887653  489999999999999999888999999999999999999999999999 8886 55667789999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++||||++++|||+|++++++++++.+...   .+.+|+++||++|++++++|+.++++++.++++++++++++.|++
T Consensus       257 Di~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~  335 (423)
T TIGR00713       257 DLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSE  335 (423)
T ss_pred             chhhhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988642   367899999999999999999998777889999999998887753

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.98  E-value=5e-32  Score=237.89  Aligned_cols=153  Identities=31%  Similarity=0.469  Sum_probs=132.7

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ...++++.+++++.++.  +++||||+|||||++|+++++++||++|+++|++||+++|+|||++||||+|+ +|+++++
T Consensus       207 ~~~~~~~~~~~~i~~~~--~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~  283 (443)
T PRK08297        207 LEAEALAQARAAFERHP--HDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGT-AWAYQQL  283 (443)
T ss_pred             HHHHHHHHHHHHHHhCC--CcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccch-HHHHHhc
Confidence            34467888999998653  58999999999999999999999999999999999999999999999999998 8888999


Q ss_pred             CCCcchhhhccccCCCCceEEEEecHHHHHHh----h-ccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIANGFPMGAVVTTTEIAQVL----T-KAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII  189 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l----~-~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~  189 (195)
                      +++|||+|+||+++    ++++++.+++.+.+    . ...+++||++||++|++++++|++++++++.+++++++++|+
T Consensus       284 gv~PDiv~~gK~l~----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~  359 (443)
T PRK08297        284 GVRPDIVAFGKKTQ----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLL  359 (443)
T ss_pred             CCCCCEEEeccccc----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999985    34555555544322    1 123788999999999999999999988899999999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       360 ~~L~~  364 (443)
T PRK08297        360 ARLEE  364 (443)
T ss_pred             HHHHH
Confidence            99975

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.98  E-value=1.2e-31  Score=233.32  Aligned_cols=151  Identities=34%  Similarity=0.544  Sum_probs=138.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.   + +++++||+||+++.+|.+.++++||++|+++|++||+++|+||||+||||+|. +++...+++.||
T Consensus       176 ~~~l~~~~~---~-~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~a~~~~~~~pd  250 (408)
T PRK04612        176 VEALEAAMA---G-GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGT-LFAHWQEQVTPD  250 (408)
T ss_pred             HHHHHHhhC---C-CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-hhhhhhcCCCCC
Confidence            567777774   2 48999999999999999999999999999999999999999999999999997 667777799999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      +++|||++++|||+|++++++++++.+....+.+||++||++|++++++|+.++++++.+++++++++|++.|+++
T Consensus       251 i~t~~K~l~~G~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l  326 (408)
T PRK04612        251 IVTLAKALGGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEAL  326 (408)
T ss_pred             EEEEcchhcCCCceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887767889999999999999999999988899999999999999999763

>PLN00144 acetylornithine transaminase

Probab=99.98  E-value=8.5e-32  Score=232.46  Aligned_cols=150  Identities=35%  Similarity=0.537  Sum_probs=138.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+..    +++++||+||+|+.+|...++++|+++|+++|++||+++|.||||+||||+|. +++++.+++.||
T Consensus       156 ~~~l~~~~~~----~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~-~~~~~~~~~~PD  230 (382)
T PLN00144        156 LEAARKLIQK----GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGY-LWAHEAYGVEPD  230 (382)
T ss_pred             HHHHHHhcCC----CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-HhhhhhcCCCCC
Confidence            5777777742    48999999999999999999999999999999999999999999999999998 677778899999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++|||++++|+|+|++++++++++.+....+.+|+++||++|++++++|+.++++++.+++++++++|++.|++
T Consensus       231 i~t~sK~l~~G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~  305 (382)
T PLN00144        231 IMTLAKPLAGGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRR  305 (382)
T ss_pred             EEEecccccCCcceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988766688999999999999999999998889999999999999888764

>PLN02624 ornithine-delta-aminotransferase

Probab=99.97  E-value=2.2e-31  Score=235.58  Aligned_cols=152  Identities=32%  Similarity=0.535  Sum_probs=138.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|+++|+...  +++++||+||++|++|.+.++++||++|+++|++||+++|+||||+||||+|. ++++++.++.||
T Consensus       211 ~~~l~~~l~~~~--~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~-~~a~~~~~i~pD  287 (474)
T PLN02624        211 LDALEKIFEEDG--DRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGK-MLACDWEEVRPD  287 (474)
T ss_pred             HHHHHHHHHhCC--CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcc-hhhHHhcCCCCC
Confidence            577888887543  48999999999999999999999999999999999999999999999999997 667777899999


Q ss_pred             hhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++||++++| ||+|++++++++++.+....+++||++||++++++.++|+.++++++.+++.+++++|++.|++
T Consensus       288 iv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~  363 (474)
T PLN02624        288 VVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQK  363 (474)
T ss_pred             EEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            99999999966 8999999999998888766688899999999999999999998778899999999999998865

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.97  E-value=4.7e-31  Score=228.75  Aligned_cols=153  Identities=33%  Similarity=0.578  Sum_probs=138.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|+++|++..  +++++||+||++|++|.+.++.+||++|+++|++||+++|+||||+|+|++|+ +++.+..++.||
T Consensus       173 ~~~le~~l~~~~--~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~-~~~~~~~~~~~d  249 (401)
T TIGR01885       173 LEALEEALEDHG--PNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGK-LLCVDHENVKPD  249 (401)
T ss_pred             HHHHHHHHHhcC--CCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hhHHhhcCCCCC
Confidence            678888887653  48999999999999999999999999999999999999999999999999997 666666789999


Q ss_pred             hhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        120 IVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       120 i~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      ++++||++++| ||+|++++++++++.+....+.+|++++|+++++++++|+.++++++.+++++++++|++.|+++
T Consensus       250 i~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~l  326 (401)
T TIGR01885       250 IVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKL  326 (401)
T ss_pred             EEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            99999999965 89999999999999887656778999999999999999999987788899999999999999764

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.97  E-value=4.5e-31  Score=228.39  Aligned_cols=149  Identities=40%  Similarity=0.640  Sum_probs=136.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     +++++||+||+++++|.+.++++|+++|+++|++||+++|+||||+||||+|+ +++++.+++.||
T Consensus       173 ~~~l~~~~~-----~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~-~~~~~~~~~~pD  246 (398)
T PRK03244        173 VDALAAAVD-----DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA-WFAHQHDGVTPD  246 (398)
T ss_pred             HHHHHHhhc-----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccch-HHhhhhhCCCCC
Confidence            567777663     37899999999999999999999999999999999999999999999999997 666777899999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++|||++++|+|+|++++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++|++.|++
T Consensus       247 i~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~  321 (398)
T PRK03244        247 VVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEA  321 (398)
T ss_pred             EEEEchhhhCCcccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999988766688899999999999999999988778999999999999999975

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.97  E-value=2.6e-31  Score=227.97  Aligned_cols=134  Identities=36%  Similarity=0.595  Sum_probs=121.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.+.     ++++|||+||++|++|.++++++||++|+++|++||+++|+|||++|+ |+|+ +|+++++++.||
T Consensus       152 ~~~l~~~i~-----~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~-~~a~~~~gv~PD  224 (364)
T PRK04013        152 VEAAKEAIT-----KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYKVEPD  224 (364)
T ss_pred             HHHHHHHhc-----CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCc-hhHHHhcCCCCC
Confidence            356666664     489999999999999999999999999999999999999999999999 9998 888899999999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHH
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQV  184 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~  184 (195)
                      |+|+||++++|+|+|+++.++++    ....+.+||++||++|+|++++|++++++++.+++++.
T Consensus       225 iv~~gK~lggG~P~~a~~~~~~~----~~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~  285 (364)
T PRK04013        225 IVTMGKGIGNGVPVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK  285 (364)
T ss_pred             EEEecccccCCceeEEEEecccc----cCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            99999999999999999998776    23358899999999999999999999998998888775

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.97  E-value=8.3e-31  Score=227.44  Aligned_cols=149  Identities=38%  Similarity=0.626  Sum_probs=136.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     +++++||+||+++++|+..++++|+++|+++|++||+++|+||||+|+|++|+ +++++.+++.||
T Consensus       174 ~~~l~~~l~-----~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~~~pd  247 (403)
T PRK05093        174 LAAVKAVID-----DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD-LFAYMHYGVTPD  247 (403)
T ss_pred             HHHHHHHhc-----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chhhhhcCCCCC
Confidence            677777774     37999999999999999999999999999999999999999999999999997 566677899999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.+|||++++|||+|++++++++++.+....+.+|++++|+++++++++|+.+.++++.+++++++++|.+.|++
T Consensus       248 i~s~sK~l~~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~  322 (403)
T PRK05093        248 ILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQK  322 (403)
T ss_pred             EEEecccccCCcceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998776677889999999999999999987778899999999999999975

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.97  E-value=1.1e-30  Score=225.35  Aligned_cols=149  Identities=39%  Similarity=0.613  Sum_probs=136.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     +++++||+||+++++|..++++++|++|+++|++||++||+||||+|||++|+ +++++.+++.||
T Consensus       165 ~~~l~~~l~-----~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~~~pd  238 (389)
T PRK01278        165 IEALKAAIT-----PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK-LFAHEWAGVTPD  238 (389)
T ss_pred             HHHHHHhhC-----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-ceeecccCCCCC
Confidence            577777775     37999999999999999999999999999999999999999999999999997 666777799999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++||++++|||+|++++++++++.+....+.+|+++||+++++++++|+.++++++.+++++++++++++|++
T Consensus       239 i~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~  313 (389)
T PRK01278        239 IMAVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEG  313 (389)
T ss_pred             EEEEehhccCCcceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988777788999999999999999999997778889999999999998875

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.97  E-value=1.3e-30  Score=228.35  Aligned_cols=152  Identities=33%  Similarity=0.500  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ..++++++++.++++.  +++||||+|||+|++|+++++++||++|+++|++||++||+||||+||||+|+ +|++++++
T Consensus       201 ~~~~l~~~~~~~~~~~--~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-~~a~~~~g  277 (431)
T TIGR03251       201 EEEALRQARAAFAERP--HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGT-AWAYQQLG  277 (431)
T ss_pred             HHHHHHHHHHHHHhCC--CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccch-HHHHHhcC
Confidence            4467888988888653  58999999999999999999999999999999999999999999999999998 78889999


Q ss_pred             CCcchhhhccccCCCCceEEEEecHHHHHHhh-----ccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q psy13322        116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT-----KAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIG  190 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~-----~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~  190 (195)
                      +.||++++||++    ++++++..+++.+...     ...+.+||++||+++++++++|+.++++++.+++++++++|++
T Consensus       278 v~PDi~~~gK~~----~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~  353 (431)
T TIGR03251       278 VQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLA  353 (431)
T ss_pred             CCCCEEEecccC----ccceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            999999999997    3445555554433221     1236789999999999999999999888899999999999999


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       354 ~L~~  357 (431)
T TIGR03251       354 RLHE  357 (431)
T ss_pred             HHHH
Confidence            9875

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.97  E-value=2.1e-30  Score=222.70  Aligned_cols=149  Identities=36%  Similarity=0.582  Sum_probs=134.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     +++++||+||++|++|.+++++++|++|+++|++||+++|+||||+|||++|. +++++++++.||
T Consensus       157 ~~~l~~~~~-----~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~-~~~~~~~~~~~d  230 (377)
T PRK02936        157 IKALKEVMN-----EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGT-LFAYEQFGLDPD  230 (377)
T ss_pred             HHHHHHhcc-----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhHHHhhCCCCc
Confidence            567777664     37899999999999999999999999999999999999999999999999997 666677799999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++||++++|||+|++++++++++.+....+.+|+++||+++++++++|+.+..++++++++++++++++.|++
T Consensus       231 i~t~sK~l~~G~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~  305 (377)
T PRK02936        231 IVTVAKGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQE  305 (377)
T ss_pred             EEEEcccccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998766677889999999999999999986677889999999999998875

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.97  E-value=2.6e-30  Score=223.84  Aligned_cols=149  Identities=36%  Similarity=0.617  Sum_probs=134.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     +++++||+||+++++|.+.++++||++|+++|++||+++|+||||+|||++|+ +++++..++.||
T Consensus       176 ~~~l~~~i~-----~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~~~~pd  249 (396)
T PRK04073        176 LEALKAAIT-----PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK-LFACDWDNVTPD  249 (396)
T ss_pred             HHHHHHhcc-----cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH-HHHhhhcCCCCC
Confidence            567777664     37899999999999999999999999999999999999999999999999997 566677789999


Q ss_pred             hhhhccccCC-CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIAN-GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~-G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++||++|+ |||+|++++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++|.+.|++
T Consensus       250 i~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~  325 (396)
T PRK04073        250 MYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKE  325 (396)
T ss_pred             EEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence            9999999995 59999999999999988766678899999999999999999987778899999999999999875

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.97  E-value=4.9e-30  Score=224.67  Aligned_cols=147  Identities=24%  Similarity=0.324  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc-ccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE-MHGVS  117 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~-~~~~~  117 (195)
                      ++++|+++|+++.  +++++||+||++|+    .++++||++|+++|++||+++|+||||+||++++.   +++ ++++.
T Consensus       173 d~~~l~~~l~~~~--~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~---g~~~~~gv~  243 (431)
T PRK06209        173 DIASLEALFEDHP--GRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHMR---GAQKLYGIV  243 (431)
T ss_pred             CHHHHHHHHHhCC--CCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcc---hhhHHhCCC
Confidence            4788999887653  58999999999987    77899999999999999999999999999976532   344 57999


Q ss_pred             cchhhhccccCCCCceEEEEecHHHHHH--hhc----c--ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322        118 PDIVTMAKGIANGFPMGAVVTTTEIAQV--LTK----A--AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII  189 (195)
Q Consensus       118 pdi~~~sK~l~~G~~~g~v~~~~~i~~~--l~~----~--~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~  189 (195)
                      |||+|+||++|+|+|+|++++++++++.  +..    .  .+++|+++||++|++++++|+.++++++.+++++++++|+
T Consensus       244 PDi~t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~  323 (431)
T PRK06209        244 PDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLA  323 (431)
T ss_pred             cceeeehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999987  311    1  2678899999999999999999988889999999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       324 ~~L~~  328 (431)
T PRK06209        324 AGVNE  328 (431)
T ss_pred             HHHHH
Confidence            99865

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.96  E-value=8.2e-29  Score=216.51  Aligned_cols=157  Identities=31%  Similarity=0.504  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ..+++.|++++++....+++++||+||++|++|.++++++++++|+++|++||+++|.||+|+|+|++|. +++++..++
T Consensus       181 ~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~-~~~~~~~~~  259 (425)
T PRK08088        181 DDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAMEQMGV  259 (425)
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhHHhhcCC
Confidence            3457889998874211258999999999999999999999999999999999999999999999999997 667777899


Q ss_pred             CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .|||.+|||++++|+|+|++++++++++.+....+.+|++++|+++++++++|+.++.+++.+++++.++++++.|++
T Consensus       260 ~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  337 (425)
T PRK08088        260 AADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLA  337 (425)
T ss_pred             CCCEEEEeccccCCCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998877788899999999999999999987778999999999999888864

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.96  E-value=1.4e-28  Score=212.97  Aligned_cols=149  Identities=36%  Similarity=0.587  Sum_probs=134.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     +++++||+||++|++|.+.++++||++|+++|++||+++|+||+|+|+|++|. +++.++.++.||
T Consensus       177 ~~~le~~i~-----~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~-~~~~~~~g~~~D  250 (401)
T PRK00854        177 AEALEAAIT-----PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK-LLAEEHEGIEAD  250 (401)
T ss_pred             HHHHHHHhC-----CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch-HhHHhhcCCCCC
Confidence            577777764     36889999999999999999999999999999999999999999999999997 555566789999


Q ss_pred             hhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++||++++| ||+|++++++++++.+....+..|++++|+++++++++|+.++++++.++++++++++.+.|++
T Consensus       251 ~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~  326 (401)
T PRK00854        251 VTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRS  326 (401)
T ss_pred             EEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence            99999999977 6999999999999988766677889999999999999999987777899999999999999875

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.96  E-value=4.6e-28  Score=208.95  Aligned_cols=149  Identities=40%  Similarity=0.660  Sum_probs=134.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     +++++|++||+++++|..+++++++++|+++|++||++||+||+|+|||++|+ +++++..++.||
T Consensus       172 ~~~l~~~i~-----~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~-~~~~~~~~~~pd  245 (396)
T PRK02627        172 IEALKAAIT-----DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYGIEPD  245 (396)
T ss_pred             HHHHHHhcC-----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc-eeeehhcCCCCC
Confidence            577777763     47899999999999999999999999999999999999999999999999997 666777799999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++|||++++|+|+|++++++++++.+....+..|+++||+++++++++|+.++++++.++++++++++++.|++
T Consensus       246 i~t~sK~~~~G~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  320 (396)
T PRK02627        246 IMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRE  320 (396)
T ss_pred             EEEEcchhhCCcccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988766677899999999999999999987778889999999999888765

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.95  E-value=5e-28  Score=208.05  Aligned_cols=149  Identities=32%  Similarity=0.515  Sum_probs=134.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     +++++|++||+++++|.+.++.+||++++++|+++|+++|+||+|+|+|++|. ++.++.+++.||
T Consensus       155 l~~l~~~l~-----~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~-~~~~~~~~~~pd  228 (375)
T PRK04260        155 LNSVKALVN-----KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK-LYAFEHYGIEPD  228 (375)
T ss_pred             HHHHHHhcC-----CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhHhhCCCCC
Confidence            677777663     37899999999999999999999999999999999999999999999999987 556667799999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++|||++++|+|+|++++++++++.+....+.+|+++||++++++.++|+.++.++++++++++++++++.|++
T Consensus       229 i~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~  303 (375)
T PRK04260        229 IFTLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQK  303 (375)
T ss_pred             EEEecccccCCcceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988766688899999999999999999998778889999999998888764

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.95  E-value=9.6e-28  Score=207.51  Aligned_cols=151  Identities=37%  Similarity=0.626  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|++.++ .   +++++|++||+++++|.+.++++|+++|+++|++||+++|+||||+|+|++|+ ++..+..++.|
T Consensus       166 d~~~le~~l~-~---~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~-~~~~~~~~~~p  240 (400)
T PTZ00125        166 DVEALEKLLQ-D---PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK-LLAHDHEGVKP  240 (400)
T ss_pred             CHHHHHHHhC-C---CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhHHHhcCCCC
Confidence            3688888886 1   47999999999999999999999999999999999999999999999999997 55666678999


Q ss_pred             chhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++||++++| +|+|++++++++++.+....+..|++++|++++++.++|+.++++++.++++++++++++.|++
T Consensus       241 d~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~  317 (400)
T PTZ00125        241 DIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKE  317 (400)
T ss_pred             CEEEEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            999999999977 5999999999999988766677889999999999999999987778889999999999998865

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.95  E-value=1.8e-27  Score=206.06  Aligned_cols=155  Identities=41%  Similarity=0.639  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ..+++.|++.++++.  +++++||+||+++++|.+.++++|+++|+++|++||+++|+||+|+|+|++|. ++.++.+++
T Consensus       175 ~~d~~~l~~~l~~~~--~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~-~~~~~~~~~  251 (413)
T cd00610         175 ADDLEALEEALEEHP--EEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK-MFAFEHFGV  251 (413)
T ss_pred             HHHHHHHHHHHhcCC--CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhhHhhcCC
Confidence            346888999888653  48999999999999999999999999999999999999999999999999987 556677789


Q ss_pred             CcchhhhccccCCCCceEEEEecHHHHHHh--hccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVL--TKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l--~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .||++++||++++|+|+|++++++++++.+  ....+.+|++++|++++++.++|+.++++++.++++++++++++.|++
T Consensus       252 ~~d~~t~sK~l~~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~  331 (413)
T cd00610         252 EPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRE  331 (413)
T ss_pred             CCCeEEEcccccCccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999899999999999999986  344467889999999999999999987778899999999999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>KOG1405|consensus

Probab=99.93  E-value=1.3e-25  Score=186.72  Aligned_cols=155  Identities=28%  Similarity=0.405  Sum_probs=131.6

Q ss_pred             chhHHHHHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc
Q psy13322         33 CEASNKFYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF  111 (195)
Q Consensus        33 ~~~~~~~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~  111 (195)
                      ...+..|++++|++|.++..+ ..||++|||||||+||+...+++|+++|+++|+|||+.+|+||||||.|-||+ +|+.
T Consensus       248 ~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk-~WaH  326 (484)
T KOG1405|consen  248 KKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGK-FWAH  326 (484)
T ss_pred             hhhhhhHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCc-eeee
Confidence            344778999999999987644 38999999999999999999999999999999999999999999999999998 9999


Q ss_pred             cccCC--CcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy13322        112 EMHGV--SPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI  188 (195)
Q Consensus       112 ~~~~~--~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l  188 (195)
                      +++++  .||++||||.|- +|+    .- .++++.. ....+.+||.+.|.-+....++++++.++++.+++...|+.|
T Consensus       327 ehw~l~~PpD~vTFSKK~q~gGf----fh-~~~frpn-~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l  400 (484)
T KOG1405|consen  327 EHWNLDSPPDVVTFSKKFQTGGF----FH-DEEFRPN-EPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKAL  400 (484)
T ss_pred             hhcCCCCCccceehhhhhhcCcc----cc-CcccCCC-chHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99976  689999999997 452    22 2222111 011256899999999999999999999999999999999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      ..+|.+
T Consensus       401 ~~gL~~  406 (484)
T KOG1405|consen  401 LKGLLE  406 (484)
T ss_pred             HHHHHH
Confidence            999865

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.92  E-value=2.5e-24  Score=184.64  Aligned_cols=149  Identities=42%  Similarity=0.676  Sum_probs=131.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     +++++|++||+++++|...++.+++++|.++|++||+++|+||+|++||+.|. ++.+...++.||
T Consensus       160 ~~~l~~~~~-----~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~-~~~~~~~~~~~d  233 (379)
T TIGR00707       160 IESLKKAID-----DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAYEHYGIEPD  233 (379)
T ss_pred             HHHHHHHhh-----hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhhHHhcCCCCC
Confidence            677777775     25779999999999998888999999999999999999999999999998886 445555688999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++|||++++|+|+|++++++++++.+.......+++.++++++++.++|+.++..++.+++++++++++++|++
T Consensus       234 ~~t~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~  308 (379)
T TIGR00707       234 IITLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEE  308 (379)
T ss_pred             EEEEcccccCCcccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998776667788899999999999999887677889999999999998864

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.91  E-value=1e-23  Score=181.15  Aligned_cols=146  Identities=19%  Similarity=0.288  Sum_probs=122.8

Q ss_pred             HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCC
Q psy13322         40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~  117 (195)
                      +++|++.|++....+ +...|++|+|+||+|++.+    |++|.+++++|+++|++||+|+ +|..|+++.++ +++|+.
T Consensus       155 ~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa-~Gv~G~~GrG~~e~~g~~  229 (388)
T COG0156         155 LDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHA-VGVLGPNGRGLAEHFGLE  229 (388)
T ss_pred             HHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEcccc-ccccCCCCccHHHHhCCC
Confidence            799999998743111 4679999999999999999    9999999999999999999998 77777544444 677886


Q ss_pred             cc-----hhhhccccC-CCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHH
Q psy13322        118 PD-----IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQI  188 (195)
Q Consensus       118 pd-----i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l  188 (195)
                      ++     +.||||+|| .|   |++.+++.+.+++.+.+  +.+|.+.+|..++++.++|+.+++ ++.+++++++..++
T Consensus       230 ~~~vdi~~gTlsKAlGs~G---g~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~  306 (388)
T COG0156         230 PEEVDIIVGTLGKALGSSG---GYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFF  306 (388)
T ss_pred             CccceEEEEEchhhhcccC---ceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            54     348899999 45   79999999999998875  677778899999999999999965 78899999999999


Q ss_pred             HHHhh
Q psy13322        189 IGYLR  193 (195)
Q Consensus       189 ~~~L~  193 (195)
                      ++.++
T Consensus       307 ~~~~~  311 (388)
T COG0156         307 RSLLK  311 (388)
T ss_pred             HHHHH
Confidence            86654

>PLN02822 serine palmitoyltransferase

Probab=99.89  E-value=2.5e-22  Score=178.16  Aligned_cols=130  Identities=23%  Similarity=0.231  Sum_probs=111.0

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc--CccccCCCcccccccCC---Ccchhh--hccccC
Q psy13322         56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT--GFGRTGDNYWGFEMHGV---SPDIVT--MAKGIA  128 (195)
Q Consensus        56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~--g~gr~G~~~~~~~~~~~---~pdi~~--~sK~l~  128 (195)
                      .++||+|++++++|++.+    |++|+++|++||++||+||+|+  .+|++|. + ..+++++   .+||++  |||++|
T Consensus       246 ~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~-G-~~e~~~v~~~~~dii~~s~sKalg  319 (481)
T PLN02822        246 RRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGR-G-LSEHFGVPIEKIDIITAAMGHALA  319 (481)
T ss_pred             cEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-C-hHHHcCCCCCCCeEEEecchhhhh
Confidence            389999999999999988    9999999999999999999998  3455564 2 4577777   678876  789998


Q ss_pred             -CCCceEEEEecHHHHHHhhccccccCCCch--HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        129 -NGFPMGAVVTTTEIAQVLTKAAHFNTFGGN--PVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       129 -~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~--p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                       .|   |++++++++++.++...+.++|+++  |..++|++++|+.+++ +++++++++++++|++.|++
T Consensus       320 ~~G---G~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~  386 (481)
T PLN02822        320 TEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSD  386 (481)
T ss_pred             hCC---eEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence             44   7899999999998877777788765  8899999999998865 78899999999999999975

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.88  E-value=3.2e-22  Score=175.67  Aligned_cols=143  Identities=13%  Similarity=0.062  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~~p  118 (195)
                      +++|+++|++..  ++.++||+|+|+||+|++++    |++|.++|++||++||+||+|+ +|+.|..+.+ .+++|+.+
T Consensus       236 ~~~Le~~L~~~~--~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~-~Gv~G~~G~G~~e~~g~~~  308 (476)
T PLN02955        236 MYHLNSLLSSCK--MKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHG-TFVCGENGGGVAEEFNCEA  308 (476)
T ss_pred             HHHHHHHHHhCC--CCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEccccc-CceecCCCCcHHHHhCCCC
Confidence            799999998764  35678999999999999998    9999999999999999999998 4455542223 46778877


Q ss_pred             ch----hhhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHH
Q psy13322        119 DI----VTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGY  191 (195)
Q Consensus       119 di----~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~  191 (195)
                      |+    .||||++|.  ..|++++++++++.+.+..  +.++.+.+|..+++++++++.+. .+..+++++++.++|++.
T Consensus       309 di~ii~~TLsKA~G~--~GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~  386 (476)
T PLN02955        309 DVDLCVGTLSKAAGC--HGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL  386 (476)
T ss_pred             CCcEEEEeCccchhc--cCceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            75    588999981  1257999999999998665  44455667788888999999884 456789999999999874

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.85  E-value=2.1e-20  Score=162.06  Aligned_cols=135  Identities=21%  Similarity=0.200  Sum_probs=108.6

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCC-cccccccCCCc----chhhhccccCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDN-YWGFEMHGVSP----DIVTMAKGIAN  129 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~-~~~~~~~~~~p----di~~~sK~l~~  129 (195)
                      +..+|++||++|++|.+++    |++|+++|++||+++|+||+|+ +|+.|+. .+..+++|+.|    ||+++|++-+.
T Consensus       138 ~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~-~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~  212 (392)
T PLN03227        138 QRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFS-FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF  212 (392)
T ss_pred             CcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECccc-ccccCCCCCcHHHHcCCCCCCCceEEEeechhhh
Confidence            5779999999999999888    9999999999999999999998 5554431 13568889998    98887633333


Q ss_pred             CCceEEEEecHHHHHHhhccccccCCCch--HHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHhhc
Q psy13322        130 GFPMGAVVTTTEIAQVLTKAAHFNTFGGN--PVGCVIASTVLDV-IKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       130 G~~~g~v~~~~~i~~~l~~~~~~~t~~~~--p~~~~aa~aal~~-~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+.+|++++++++++.+....+.++|+++  |+.++|++++++. ++.+++++++++++++|++.|++
T Consensus       213 g~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~  280 (392)
T PLN03227        213 GSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTN  280 (392)
T ss_pred             hccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence            45567888999998887766666777765  8888888888865 45678999999999999999963

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.84  E-value=4.8e-20  Score=159.97  Aligned_cols=145  Identities=21%  Similarity=0.266  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-ccccCCCcccccccCC-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-G-FGRTGDNYWGFEMHGV-  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g-~gr~G~~~~~~~~~~~-  116 (195)
                      +++|+++++...+ +++++|++|++++++|++.+    +++|+++|++||++||+||+|+ | +|+.|. ++ .++.++ 
T Consensus       164 ~~~le~~l~~~~~-~~~~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~-g~-~~~~~~~  236 (407)
T PRK09064        164 VAHLEELLAAADP-DRPKLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGG-GI-AERDGLM  236 (407)
T ss_pred             HHHHHHHHHhccC-CCCeEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCC-Ch-HHhcCCC
Confidence            5778888775422 36789999999999999887    9999999999999999999998 6 477765 32 344454 


Q ss_pred             -Ccchh--hhccccC-CCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHH
Q psy13322        117 -SPDIV--TMAKGIA-NGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQII  189 (195)
Q Consensus       117 -~pdi~--~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~  189 (195)
                       .+|++  ||||++| .|   |++++++++++.+....  +.++.+.+|.++++++++++.+++ +..++++++++++|.
T Consensus       237 ~~~div~~t~sKa~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~  313 (407)
T PRK09064        237 DRIDIIEGTLAKAFGVMG---GYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLK  313 (407)
T ss_pred             CCCeEEEEecchhhhccC---ceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence             56777  9999998 23   68889999988876543  344667889999999999998865 445688999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       314 ~~L~~  318 (407)
T PRK09064        314 AALDA  318 (407)
T ss_pred             HHHHH
Confidence            99875

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.82  E-value=2e-19  Score=155.99  Aligned_cols=146  Identities=20%  Similarity=0.246  Sum_probs=113.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-ccccCCCcccccccCC-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-G-FGRTGDNYWGFEMHGV-  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g-~gr~G~~~~~~~~~~~-  116 (195)
                      .++++++++...+ +++++|++|++++++|.+.+    +++|+++|++||++||+||+|+ | +|..|. + ..+..++ 
T Consensus       163 ~~~l~~~l~~~~~-~~~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~-g-~~~~~~~~  235 (402)
T TIGR01821       163 VAHLEKLLQSVDP-NRPKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGG-G-IAERDGLM  235 (402)
T ss_pred             HHHHHHHHHhccC-CCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCC-c-cchhccCC
Confidence            5677887775432 36789999999999999887    9999999999999999999998 4 234443 1 1344454 


Q ss_pred             -Ccchh--hhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322        117 -SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG  190 (195)
Q Consensus       117 -~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~  190 (195)
                       .+|++  +|||+++.  +.|++++++++++.+....  +.+|++.+|.++++++++|+.+++ +.+.++++++++++.+
T Consensus       236 ~~~div~~t~sKa~g~--~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~  313 (402)
T TIGR01821       236 HRIDIIEGTLAKAFGV--VGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKN  313 (402)
T ss_pred             CCCeEEEEechhhhcc--CCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence             46776  99999982  1267889999999887543  345667899999999999998865 4567778899999999


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       314 ~L~~  317 (402)
T TIGR01821       314 LLEA  317 (402)
T ss_pred             HHHH
Confidence            8875

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>KOG1360|consensus

Probab=99.81  E-value=2.3e-19  Score=151.63  Aligned_cols=150  Identities=19%  Similarity=0.225  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-ccc
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMH  114 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~  114 (195)
                      -.+++.+|+++|++..+ ...+.|-+|+|+||+|.+++    |++|.++++|||++-.+||||+ .|..|.++.+. ++-
T Consensus       285 rHND~~hL~~lL~~~~~-svPKivAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerd  358 (570)
T KOG1360|consen  285 RHNDLDHLEQLLQSSPK-SVPKIVAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERD  358 (570)
T ss_pred             ccCCHHHHHHHHHhCCC-CCCceEEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhh-hccccCCCCCccccC
Confidence            33448999999998754 47778999999999999999    9999999999999999999998 77777644444 555


Q ss_pred             CC--Ccchh--hhccccCC-CCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHH
Q psy13322        115 GV--SPDIV--TMAKGIAN-GFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQV  184 (195)
Q Consensus       115 ~~--~pdi~--~~sK~l~~-G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~  184 (195)
                      |+  +.||+  |+||+||+ |   ||+.++..+++.++..+  +.+|++.+|..++.|+++++++..   ..++..-+++
T Consensus       359 Gvm~kvDiIsGTLgKafGcVG---GYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrn  435 (570)
T KOG1360|consen  359 GVMHKVDIISGTLGKAFGCVG---GYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRN  435 (570)
T ss_pred             Ccchhhhhcccchhhhccccc---ceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            66  55776  88999993 3   68999999999998876  778889999999999999999853   3566667788


Q ss_pred             HHHHHHHhhc
Q psy13322        185 SAQIIGYLRV  194 (195)
Q Consensus       185 ~~~l~~~L~~  194 (195)
                      ..++++.|.+
T Consensus       436 v~~~kq~l~~  445 (570)
T KOG1360|consen  436 VKYVKQLLME  445 (570)
T ss_pred             HHHHHHHHHH
Confidence            8888888764

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.81  E-value=8.7e-19  Score=152.28  Aligned_cols=145  Identities=18%  Similarity=0.197  Sum_probs=113.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-cccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GF-GRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~-gr~G~~~~~~~~~~~~  117 (195)
                      .+++++.++...+ .++++|++|++++++|.+.+    +++|.++|++||+++|+||+|+ |+ |++|. ++ .++.++.
T Consensus       163 ~~~l~~~l~~~~~-~~~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~-g~-~~~~~~~  235 (406)
T PRK13393        163 PADLERKLSDLDP-HRPKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGG-GI-AEREGLA  235 (406)
T ss_pred             HHHHHHHHHhccC-CCCEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-ch-hhhcCCC
Confidence            4667777765432 36789999999999999988    9999999999999999999998 65 77775 22 3455554


Q ss_pred             --cchh--hhccccC-CCCceEEEEecHHHHHHhhcccc--ccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHH
Q psy13322        118 --PDIV--TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQII  189 (195)
Q Consensus       118 --pdi~--~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~--~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~  189 (195)
                        +||+  +|||++| .|   |++++++++++.+.....  .+|++.+|.+++++.++|+.+++ ...++++++++++|+
T Consensus       236 ~~~~i~~~tlsKa~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~  312 (406)
T PRK13393        236 DRLTIIEGTLAKAFGVMG---GYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLR  312 (406)
T ss_pred             CCCeEEEEeCchhhcccC---ceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence              5666  8999998 34   688889999888876543  34667899999999999998754 334577889999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       313 ~~L~~  317 (406)
T PRK13393        313 ARLDK  317 (406)
T ss_pred             HHHHH
Confidence            98875

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.76  E-value=9.1e-18  Score=145.65  Aligned_cols=150  Identities=21%  Similarity=0.270  Sum_probs=119.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~p  118 (195)
                      .+.|++.+.     .++++|++....+.+|. +.++++|++|+++|++||++||+||+|.+|.+.|..+.+. +..+...
T Consensus       153 ~~~l~~~i~-----~ktk~i~ln~P~NPTGa-v~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~  226 (393)
T COG0436         153 LEDLEAAIT-----PKTKAIILNSPNNPTGA-VYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARD  226 (393)
T ss_pred             HHHHHhhcC-----ccceEEEEeCCCCCcCc-CCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcc
Confidence            577777766     36779999999999995 6678999999999999999999999999998888423333 2222111


Q ss_pred             c---hhhhccccC-CCCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHH
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQII  189 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~  189 (195)
                      .   +-.|||+++ +|||+||++++ +++++.+.......+++.+.++|.|+.++|+.-++    +..++.++++++.+.
T Consensus       227 ~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~  306 (393)
T COG0436         227 RTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLV  306 (393)
T ss_pred             eEEEEecccccccccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHH
Confidence            2   347799999 99999999999 78888887665667778999999999999986521    445578999999999


Q ss_pred             HHhhcC
Q psy13322        190 GYLRVV  195 (195)
Q Consensus       190 ~~L~~l  195 (195)
                      +.|+++
T Consensus       307 ~~l~~~  312 (393)
T COG0436         307 EALNEI  312 (393)
T ss_pred             HHHHhc
Confidence            999853

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.75  E-value=1.7e-17  Score=139.74  Aligned_cols=149  Identities=17%  Similarity=0.219  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++||+.+.+    .++..+|+-...+.+| ++|+.++|.+|.+||++||+++|+||||+.+...|..++.+..  +.|
T Consensus       146 D~~~LE~~~~~----~~vkl~iLCnPHNP~G-rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~--ls~  218 (388)
T COG1168         146 DFDALEKAFVD----ERVKLFILCNPHNPTG-RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFAS--LSE  218 (388)
T ss_pred             cHHHHHHHHhc----CCccEEEEeCCCCCCC-ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhh--cCh
Confidence            47999999885    3666777777778888 7999999999999999999999999999999888843555432  333


Q ss_pred             c----hh-hh--ccccC-CCCceEEEEecH-HHHHHhhccc-cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHH
Q psy13322        119 D----IV-TM--AKGIA-NGFPMGAVVTTT-EIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSA  186 (195)
Q Consensus       119 d----i~-~~--sK~l~-~G~~~g~v~~~~-~i~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~  186 (195)
                      +    .+ ++  ||+|+ .|+.+|+++.++ ++++.+.... .....+.|.+++.|..+|++..+.  ++++++++.|.+
T Consensus       219 ~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~  298 (388)
T COG1168         219 RFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRD  298 (388)
T ss_pred             hhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            2    22 22  69999 899998877765 5655554433 445567799999999999999876  889999999999


Q ss_pred             HHHHHhhc
Q psy13322        187 QIIGYLRV  194 (195)
Q Consensus       187 ~l~~~L~~  194 (195)
                      ++.+.|++
T Consensus       299 ~~~~~l~~  306 (388)
T COG1168         299 YVADFLNK  306 (388)
T ss_pred             HHHHHHHh
Confidence            99999875

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.72  E-value=8.2e-17  Score=140.01  Aligned_cols=146  Identities=19%  Similarity=0.219  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-cccCCCcccccccCC-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GF-GRTGDNYWGFEMHGV-  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~-gr~G~~~~~~~~~~~-  116 (195)
                      .+.+++.++.... +++++|++|++++++|.+.+    +++|.++|++||+++|+||+|+ |+ |..|. +. .+..++ 
T Consensus       164 ~~~l~~~l~~~~~-~~t~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~-g~-~~~~~~~  236 (410)
T PRK13392        164 LADLEEQLASVDP-DRPKLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGG-GI-AERDGLM  236 (410)
T ss_pred             HHHHHHHHHhccC-CCCEEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCC-ch-hhhccCC
Confidence            4556666665432 37789999999999999887    9999999999999999999998 43 44443 21 233344 


Q ss_pred             -Ccchh--hhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322        117 -SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG  190 (195)
Q Consensus       117 -~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~  190 (195)
                       .+|++  ++||++|.  +.|++++++++++.++...  +.++.+.+|++++++.++|+.++. ....+++++++++|++
T Consensus       237 ~~~div~~tlsK~~g~--~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~  314 (410)
T PRK13392        237 DRIDMIQGTLAKAFGC--LGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKA  314 (410)
T ss_pred             CCCcEEEEEChHhhhc--ccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence             45665  88999982  2278888999988877654  234556788899999999998754 4556778999999999


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       315 ~L~~  318 (410)
T PRK13392        315 KLNA  318 (410)
T ss_pred             HHHH
Confidence            8875

>PRK07505 hypothetical protein; Provisional

Probab=99.72  E-value=1e-16  Score=139.08  Aligned_cols=139  Identities=12%  Similarity=0.149  Sum_probs=102.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc--cCccccCCCcccccccCC-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ--TGFGRTGDNYWGFEMHGV-  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~--~g~gr~G~~~~~~~~~~~-  116 (195)
                      ++.|++++..    +..++||+||++++ |.+.+    +++|+++|++||++||+||+|  +++|++|. ++..++++. 
T Consensus       169 ~~~l~~~~~~----~~~~~vl~~p~~~~-G~~~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~-~~~~~~~~~~  238 (402)
T PRK07505        169 LDALEDICKT----NKTVAYVADGVYSM-GGIAP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGE-GYVRSELDYR  238 (402)
T ss_pred             HHHHHHHHhc----CCCEEEEEeccccc-CCcCC----HHHHHHHHHHcCCEEEEECcccccCcCCCCC-chHHHHcCCC
Confidence            5777777753    25679999999977 44555    899999999999999999998  56788886 455566776 


Q ss_pred             Ccchh----hhccccCCCCceEEEEe-cHHHHHHhhccccccCCCc--hHHHHHHHHHHHHhhcc---hhHHHHHHHHHH
Q psy13322        117 SPDIV----TMAKGIANGFPMGAVVT-TTEIAQVLTKAAHFNTFGG--NPVGCVIASTVLDVIKD---EELQYNCKQVSA  186 (195)
Q Consensus       117 ~pdi~----~~sK~l~~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~--~p~~~~aa~aal~~~~~---~~~~~~l~~~~~  186 (195)
                      .||.+    ++||+++++  +|+++. ++++++.+....+.+||++  +++++++++++++.+.+   .++.++++++..
T Consensus       239 ~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~  316 (402)
T PRK07505        239 LNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIA  316 (402)
T ss_pred             CCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence            67744    789999843  366664 6788888877666677755  46899999999996643   344555666655


Q ss_pred             HHHH
Q psy13322        187 QIIG  190 (195)
Q Consensus       187 ~l~~  190 (195)
                      .+..
T Consensus       317 ~~~~  320 (402)
T PRK07505        317 LFDS  320 (402)
T ss_pred             HHHH
Confidence            5433

>KOG1359|consensus

Probab=99.72  E-value=7.9e-17  Score=131.88  Aligned_cols=147  Identities=16%  Similarity=0.197  Sum_probs=113.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCC--
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGV--  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~--  116 (195)
                      +-+|+..+..... .+...|+.|+++||+|++.|    |++|.+|++|||+++++||.|+ .|+.|..+.+ .+.+|+  
T Consensus       179 v~~l~~~l~~a~k-~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHa-Tgf~G~tGrGt~E~~~vm~  252 (417)
T KOG1359|consen  179 VFDLEHCLISACK-MRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHA-TGFFGETGRGTAEEFGVMG  252 (417)
T ss_pred             hHHHHHHHHHhhh-heEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeeccc-ceeecCCCCChHHHhCCCC
Confidence            5677777665433 58999999999999999999    9999999999999999999996 3334432223 366675  


Q ss_pred             Ccchh--hhccccCCCCceEEEEecHHHHHHhhcccccc--CCCchHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHH
Q psy13322        117 SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAHFN--TFGGNPVGCVIASTVLDVI-KDEELQYNCKQVSAQIIGY  191 (195)
Q Consensus       117 ~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~--t~~~~p~~~~aa~aal~~~-~~~~~~~~l~~~~~~l~~~  191 (195)
                      .+||+  |+||++||. ..||+.++++++..+++....+  +.+.+|.....+.++++.+ .......+.+.+.+++++.
T Consensus       253 ~vdiinsTLgKAlGga-~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~  331 (417)
T KOG1359|consen  253 DVDIINSTLGKALGGA-SGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREF  331 (417)
T ss_pred             cceehhhhhhhhhcCC-CCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            56665  889999831 2479999999999998876444  4455777778888999976 4567788888888888876


Q ss_pred             hh
Q psy13322        192 LR  193 (195)
Q Consensus       192 L~  193 (195)
                      ..
T Consensus       332 me  333 (417)
T KOG1359|consen  332 ME  333 (417)
T ss_pred             HH
Confidence            54

>PLN02483 serine palmitoyltransferase

Probab=99.71  E-value=3.3e-16  Score=139.44  Aligned_cols=130  Identities=23%  Similarity=0.315  Sum_probs=99.5

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-ccccCCCcccccccCCCc---chh--hhccccC
Q psy13322         56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-G-FGRTGDNYWGFEMHGVSP---DIV--TMAKGIA  128 (195)
Q Consensus        56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g-~gr~G~~~~~~~~~~~~p---di~--~~sK~l~  128 (195)
                      ...|++|+++++.|.+.+    +++|.++|++||++||+||+|+ | +|++|.+  ..+.+++.|   ||+  +|||++|
T Consensus       241 k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g--~~~~~~v~~~~~dI~~~SfSKs~g  314 (489)
T PLN02483        241 KIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG--VCELLGVDPADVDIMMGTFTKSFG  314 (489)
T ss_pred             eEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCc--hHHhcCCCcccCcEEEEecchhcc
Confidence            458999999999999987    9999999999999999999997 1 3444431  234556544   555  8899998


Q ss_pred             -CCCceEEEEecHHHHHHhhccccccCC--CchHHHHHHHHHHHHhhcc-------hhHHHHHHHHHHHHHHHhhc
Q psy13322        129 -NGFPMGAVVTTTEIAQVLTKAAHFNTF--GGNPVGCVIASTVLDVIKD-------EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       129 -~G~~~g~v~~~~~i~~~l~~~~~~~t~--~~~p~~~~aa~aal~~~~~-------~~~~~~l~~~~~~l~~~L~~  194 (195)
                       .|   |++++++++++.+.......++  +.+|..+++++++|+.+..       .+.++++++++++|++.|++
T Consensus       315 ~~G---G~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~  387 (489)
T PLN02483        315 SCG---GYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQK  387 (489)
T ss_pred             cCc---eEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHH
Confidence             44   8999999999998876544333  3467777778888886531       24678899999999999975

>PRK07179 hypothetical protein; Provisional

Probab=99.70  E-value=3.5e-16  Score=135.91  Aligned_cols=146  Identities=15%  Similarity=0.184  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcc-cccccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYW-GFEMHGVS  117 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~-~~~~~~~~  117 (195)
                      ++++|++.+++.    +.++|++|++++++|.+.+    +++|+++|++||++||+||+|+ +|+.|..+. .+..+++.
T Consensus       169 d~~~l~~~l~~~----~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~-~g~~g~~g~g~~~~~~~~  239 (407)
T PRK07179        169 DVDHLRRQIERH----GPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHS-LGTHGPQGAGLVAELGLT  239 (407)
T ss_pred             CHHHHHHHHHhc----CCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECccc-ccCcCCCCCchHHhcCCC
Confidence            468888888642    4578999999999999888    8999999999999999999998 444332111 13445654


Q ss_pred             c--chhh--hccccCCCCceEEEEecHHHHHHhhccccc--cCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322        118 P--DIVT--MAKGIANGFPMGAVVTTTEIAQVLTKAAHF--NTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG  190 (195)
Q Consensus       118 p--di~~--~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~--~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~  190 (195)
                      +  |+++  +||++++  ++|++++++++++.+......  ++.+.++..++++.++++.++. +++++++++++++|++
T Consensus       240 ~~vdi~~~S~sK~~g~--~~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~  317 (407)
T PRK07179        240 SRVHFITASLAKAFAG--RAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLRE  317 (407)
T ss_pred             CCCCEEEeechHhhhc--cCeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            3  7654  6899974  589999999988877643221  1222245666677788888754 4678999999999999


Q ss_pred             HhhcC
Q psy13322        191 YLRVV  195 (195)
Q Consensus       191 ~L~~l  195 (195)
                      .|+++
T Consensus       318 ~L~~~  322 (407)
T PRK07179        318 GLSEL  322 (407)
T ss_pred             HHHHc
Confidence            99753

>KOG0257|consensus

Probab=99.69  E-value=1.4e-16  Score=135.51  Aligned_cols=150  Identities=19%  Similarity=0.182  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~~~p  118 (195)
                      .+.|+..+.     .+..+||+.+..+..|. +.++++|++|+++|++||+++|+||||.-+-+.|..+..+.. -|+..
T Consensus       162 ~~~le~~~t-----~kTk~Ii~ntPhNPtGk-vfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~e  235 (420)
T KOG0257|consen  162 PEELESKIT-----EKTKAIILNTPHNPTGK-VFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYE  235 (420)
T ss_pred             hHHHHhhcc-----CCccEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhh
Confidence            577888777     46778999999999995 667899999999999999999999999988788853433322 24433


Q ss_pred             c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc---c-------hhHHHHHHHH
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK---D-------EELQYNCKQV  184 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~---~-------~~~~~~l~~~  184 (195)
                      .   +-.+||+++ +||++||+++++.+...+........+..++..+.|..+++..-.   +       .++...++++
T Consensus       236 rtitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~k  315 (420)
T KOG0257|consen  236 RTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEK  315 (420)
T ss_pred             eEEEeccccceeeeeeeeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHH
Confidence            3   345689999 999999999988898888777666667666666666666665422   1       3477889999


Q ss_pred             HHHHHHHhhcC
Q psy13322        185 SAQIIGYLRVV  195 (195)
Q Consensus       185 ~~~l~~~L~~l  195 (195)
                      ++.|.+.|.++
T Consensus       316 rdil~k~L~~l  326 (420)
T KOG0257|consen  316 RDILAKALEEL  326 (420)
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.69  E-value=6.4e-16  Score=133.22  Aligned_cols=149  Identities=19%  Similarity=0.247  Sum_probs=109.9

Q ss_pred             HHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCC-
Q psy13322         40 YEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGV-  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~-  116 (195)
                      +++|++.+.+... +.++++|+++++++++|.+.+    +++|.++|++||++||+||+|+ +|..|..+.+ .+..++ 
T Consensus       154 ~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~-~g~~~~~~~~~~~~~~~~  228 (393)
T TIGR01822       154 MADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHA-TGFLGPTGRGSHELCGVM  228 (393)
T ss_pred             HHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCcc-ccCcCCCCCchHHhcCCC
Confidence            5778887775321 126789999999999998877    9999999999999999999995 5444421111 223344 


Q ss_pred             -Ccchh--hhccccCCCCceEEEEecHHHHHHhhccccccCC--CchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322        117 -SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTF--GGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG  190 (195)
Q Consensus       117 -~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~--~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~  190 (195)
                       .+|++  ++||+++ |+++|++++++++++.+......+.+  +.++..+++++++++.++. +++.++++++++++++
T Consensus       229 ~~~di~~~s~sK~l~-g~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~  307 (393)
T TIGR01822       229 GRVDIITGTLGKALG-GASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRE  307 (393)
T ss_pred             CCCeEEEEEChHHhh-CCCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence             35665  6789987 57899999999999888664322222  3456777788899987744 5788999999999999


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       308 ~L~~  311 (393)
T TIGR01822       308 RMEA  311 (393)
T ss_pred             HHHH
Confidence            8874

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.68  E-value=3.2e-16  Score=134.36  Aligned_cols=144  Identities=17%  Similarity=0.228  Sum_probs=106.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.+.    +..+|++...++++|...+    ++++.++++.++++||+||+|++|++.|. .......+..|+
T Consensus       149 ~~~l~~~~~~~----~~~~i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~-~~~~~~~~~~~~  219 (368)
T PRK03317        149 VDAAVAAIAEH----RPDVVFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGT-PSALTLLPEYPR  219 (368)
T ss_pred             HHHHHHHHhcc----CCCEEEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCC-cCHHHHHHhCCC
Confidence            57788777643    3345667777899998776    66666777777899999999999977664 222333344567


Q ss_pred             hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++   +|||++| +|+|+||+++++++++.+....  .+++.++++++++.++|+..+. .+..++++++++++.+.|++
T Consensus       220 ~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  297 (368)
T PRK03317        220 LVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLRE  297 (368)
T ss_pred             EEEEEechhhhccchhhhhhhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66   8899998 8999999999999999887543  3567889999999999976432 33456677778888877764

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.67  E-value=1.6e-15  Score=129.89  Aligned_cols=147  Identities=20%  Similarity=0.240  Sum_probs=108.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-ccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-G-FGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g-~gr~G~~~~~~~~~~~~  117 (195)
                      ++.+++.++...  .+.++|+++++++.+|...+    +++|.++|++||++||+||+|+ | +++.|..+.........
T Consensus       155 ~~~l~~~i~~~~--~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~  228 (385)
T PRK05958        155 VDALEALLAKWR--AGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGE  228 (385)
T ss_pred             HHHHHHHHHhcc--CCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCC
Confidence            577888886532  25778999999999997766    9999999999999999999996 2 33344321111112234


Q ss_pred             cc---hhhhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHH
Q psy13322        118 PD---IVTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       118 pd---i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~  191 (195)
                      ++   +.++||+++.  +.|++++++++++.+....  +..+.+.++++++++.++|+.++. +++.+++.++++++.+.
T Consensus       229 ~~~i~~~s~sK~~~~--~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~  306 (385)
T PRK05958        229 PDVILVGTLGKALGS--SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAG  306 (385)
T ss_pred             CceEEEEechhhccc--CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            56   4578999983  2378899988888775432  334456788999999999998765 57889999999999999


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       307 L~~  309 (385)
T PRK05958        307 LRA  309 (385)
T ss_pred             HHH
Confidence            875

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.66  E-value=2.8e-15  Score=128.91  Aligned_cols=145  Identities=19%  Similarity=0.226  Sum_probs=105.8

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-ccccCCCcccccccC-
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-G-FGRTGDNYWGFEMHG-  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g-~gr~G~~~~~~~~~~-  115 (195)
                      +++|+++|+...+. ++..+|+++++++++|.+.+    +++|.++|+++|+++++||+|+ | +|+.|. ++ ...++ 
T Consensus       127 ~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~-g~-~~~~~~  200 (370)
T PRK05937        127 LDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGK-GF-CHSLGY  200 (370)
T ss_pred             HHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-ch-HHhhCC
Confidence            68888888754211 24557889999999999998    9999999999999999999998 3 455554 21 11223 


Q ss_pred             --CCcchhhhccccCC-CCceEEEEecHHHHHHhhcc--ccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322        116 --VSPDIVTMAKGIAN-GFPMGAVVTTTEIAQVLTKA--AHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI  188 (195)
Q Consensus       116 --~~pdi~~~sK~l~~-G~~~g~v~~~~~i~~~l~~~--~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l  188 (195)
                        ..+++.++||++|. |   +++++.+++.+.+...  .+.++.+.+|.+++++.++++.+.+  +...++++++.++|
T Consensus       201 ~~~~~~~~tlsK~~g~~G---~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l  277 (370)
T PRK05937        201 ENFYAVLVTYSKALGSMG---AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYF  277 (370)
T ss_pred             CCCcEEEEechhhhhcCc---eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence              23577899999983 5   5567777766655432  2444556788888888899998854  45678899999999


Q ss_pred             HHHhh
Q psy13322        189 IGYLR  193 (195)
Q Consensus       189 ~~~L~  193 (195)
                      .+.|+
T Consensus       278 ~~~l~  282 (370)
T PRK05937        278 AQKFS  282 (370)
T ss_pred             HHhcC
Confidence            88775

>PLN00175 aminotransferase family protein; Provisional

Probab=99.66  E-value=1.9e-15  Score=131.80  Aligned_cols=148  Identities=21%  Similarity=0.260  Sum_probs=113.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p  118 (195)
                      ++.|++.+.     .++++|++....+.+|. +++.+.+++|.++|++||+++|+||+|..+.+.+. +.++..+ +..+
T Consensus       177 ~~~l~~~~~-----~~~k~i~i~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~  249 (413)
T PLN00175        177 EDELKAAFT-----SKTRAILINTPHNPTGK-MFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGMYE  249 (413)
T ss_pred             HHHHHHhcC-----cCceEEEecCCCCCCCc-CCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCCcC
Confidence            566777664     25667888888888996 56789999999999999999999999998765443 2233222 3223


Q ss_pred             c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      .   +-+|||.++ .|||+||+++++++++.+.......+++.+++.+.++.++|+..+.  +++++.++++++.+.+.|
T Consensus       250 ~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  329 (413)
T PLN00175        250 RTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGL  329 (413)
T ss_pred             cEEEEecchhhccCcchheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   337799999 8999999999999998887665555678888999999999975422  567788999999999988


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       330 ~~  331 (413)
T PLN00175        330 KE  331 (413)
T ss_pred             HH
Confidence            65

>PRK07682 hypothetical protein; Validated

Probab=99.65  E-value=8e-16  Score=132.27  Aligned_cols=148  Identities=14%  Similarity=0.217  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~~~p  118 (195)
                      ++.|++.+.     +++++|++....+.+|. +++.+.+++|.++|++|++++|+||+|..+.+.+. +.++.. .+..+
T Consensus       144 ~~~l~~~~~-----~~~~~v~~~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~  216 (378)
T PRK07682        144 PAQIEAAIT-----AKTKAILLCSPNNPTGA-VLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKGMRE  216 (378)
T ss_pred             HHHHHhhcC-----cccEEEEEECCCCCcCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcccccC
Confidence            566776654     24566766666788886 66788999999999999999999999998876553 323221 12223


Q ss_pred             c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHh
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--DEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~~~~~~~l~~~~~~l~~~L  192 (195)
                      .   +.+|||.++ .|+|+||+++++++++.+.......+++.+++++.++.++|+..+  .+++++.++++++++.+.|
T Consensus       217 ~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L  296 (378)
T PRK07682        217 RTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSF  296 (378)
T ss_pred             CEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            3   447799999 899999999999999988765444456678899999999997542  2466788899999999988


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       297 ~~  298 (378)
T PRK07682        297 NE  298 (378)
T ss_pred             HH
Confidence            75

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.64  E-value=4e-15  Score=127.85  Aligned_cols=146  Identities=16%  Similarity=0.190  Sum_probs=107.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--ccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG--FGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g--~gr~G~~~~~~~~~~~~  117 (195)
                      .+++++.+.+... .+.++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.  +++.|. . ....+++.
T Consensus       149 ~~~l~~~l~~~~~-~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~-~~~~~~~~  221 (385)
T TIGR01825       149 MDDLDRVLRENPS-YGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-G-TVHHFGLE  221 (385)
T ss_pred             HHHHHHHHHhhcc-CCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-c-cHhhcCCC
Confidence            4567777765432 36789999999999998776    89999999999999999999963  333343 1 23334554


Q ss_pred             cc----hhhhccccCCCCceEEEEecHHHHHHhhcccc--ccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322        118 PD----IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG  190 (195)
Q Consensus       118 pd----i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~--~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~  190 (195)
                      +|    +.++||+++  .+.|++++++++++.+.....  ..+...+|..++++.++++.+.+ .+..++++++++++.+
T Consensus       222 ~~~~i~~~s~sK~~~--~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~  299 (385)
T TIGR01825       222 DKVDIQVGTLSKAIG--VVGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKA  299 (385)
T ss_pred             cCCcEEEEeccHHhh--cCCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            55    358899997  234788889998888865432  22334578888999999987643 5678889999999999


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       300 ~L~~  303 (385)
T TIGR01825       300 GLGK  303 (385)
T ss_pred             HHHH
Confidence            8875

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.64  E-value=6.3e-15  Score=124.88  Aligned_cols=147  Identities=16%  Similarity=0.208  Sum_probs=108.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~~p  118 (195)
                      ++.|++.++.... .+.++|+++++++++|...+    +++|.++|++||++||+||+|+ +|..+....+ ...+++.+
T Consensus       132 ~~~l~~~~~~~~~-~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~  205 (360)
T TIGR00858       132 VEHLERLLEKNRG-ERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKP  205 (360)
T ss_pred             HHHHHHHHHHccc-CCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCc
Confidence            5778888875421 25789999999999997776    9999999999999999999997 4443321112 23345554


Q ss_pred             c-----hhhhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322        119 D-----IVTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG  190 (195)
Q Consensus       119 d-----i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~  190 (195)
                      +     +.++||+++.  +.|++++++++++.+....  +..+.+.++.+++++.++++.++. +++.++++++++++.+
T Consensus       206 ~~~~i~i~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~  283 (360)
T TIGR00858       206 EPVDIQVGTLSKALGS--YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRA  283 (360)
T ss_pred             cCCcEEEEechhhhhc--cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            4     4578999983  2378999999888775433  223345677888888999987654 5678999999999999


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       284 ~L~~  287 (360)
T TIGR00858       284 GLEA  287 (360)
T ss_pred             HHHH
Confidence            9875

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK07324 transaminase; Validated

Probab=99.63  E-value=4e-15  Score=128.13  Aligned_cols=146  Identities=16%  Similarity=0.224  Sum_probs=108.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|++....+.+|. +.+++.+++|.++|++||+++|+||+|.++.+.+. ..+..  ...++
T Consensus       143 ~~~l~~~~~-----~~~kli~i~~p~NPtG~-~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~--~~~~~  213 (373)
T PRK07324        143 LDELRRLVR-----PNTKLICINNANNPTGA-LMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIA--DLYEK  213 (373)
T ss_pred             HHHHHHhCC-----CCCcEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChh--hccCC
Confidence            466666543     25567888888888885 55788899999999999999999999998866443 22221  12222


Q ss_pred             ---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhh
Q psy13322        120 ---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 ---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L~  193 (195)
                         +.+|||.++ .|||+||+++++++++.+.......+++.+++++.++..+|+..+.  +..++.++++.+.+.+.|+
T Consensus       214 ~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~  293 (373)
T PRK07324        214 GISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVA  293 (373)
T ss_pred             EEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               447899999 8999999999999999888766556677788888888888864322  4556667778888877765


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       294 ~  294 (373)
T PRK07324        294 K  294 (373)
T ss_pred             c
Confidence            3

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.63  E-value=7.3e-15  Score=126.40  Aligned_cols=148  Identities=18%  Similarity=0.233  Sum_probs=107.4

Q ss_pred             HHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-cccCCCcccccccCC
Q psy13322         40 YEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GF-GRTGDNYWGFEMHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~-gr~G~~~~~~~~~~~  116 (195)
                      +++|++.+++... +.++++|++++++++.|...+    +++|.++|++||++||+||+|+ |+ +..|. . .....++
T Consensus       158 ~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~-~-~~~~~~~  231 (397)
T PRK06939        158 MADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGR-G-TVEHFGV  231 (397)
T ss_pred             HHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-C-HHHHcCC
Confidence            5677777764321 126789999999999998555    9999999999999999999996 32 22332 1 2233344


Q ss_pred             --Ccchh--hhccccCCCCceEEEEecHHHHHHhhccccc--cCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHH
Q psy13322        117 --SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAHF--NTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQII  189 (195)
Q Consensus       117 --~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~--~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~  189 (195)
                        .+|++  ++||+++ |+++||+++++++++.+......  .+.+.++..+++++++++.++. ++++++++++++++.
T Consensus       232 ~~~~~i~~~S~sK~~~-g~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~  310 (397)
T PRK06939        232 MDRVDIITGTLGKALG-GASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFR  310 (397)
T ss_pred             CCCCcEEEEECHHHhC-ccCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence              34666  7789996 45899999999998888654322  2223456667888888887754 577889999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       311 ~~L~~  315 (397)
T PRK06939        311 EGMTA  315 (397)
T ss_pred             HHHHH
Confidence            98875

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.63  E-value=5.1e-15  Score=127.08  Aligned_cols=149  Identities=22%  Similarity=0.225  Sum_probs=109.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc-CCCccccccc-CCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT-GDNYWGFEMH-GVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~-G~~~~~~~~~-~~~  117 (195)
                      ++.|++.+.     .++++|++....+.+|.+ ++.+.+++|.++|++||+++|+||+|.++.+. +....++... ...
T Consensus       148 ~~~l~~~~~-----~~~~~i~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  221 (382)
T PRK06108        148 LDRLLAAIT-----PRTRALFINSPNNPTGWT-ASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPD  221 (382)
T ss_pred             HHHHHHhcC-----ccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCc
Confidence            566766654     245677777777888865 68899999999999999999999999987553 2211111111 112


Q ss_pred             cc---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHH
Q psy13322        118 PD---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       118 pd---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~  191 (195)
                      +.   +.+|||.++ +|+|+||+++++++++.+.......+.+.+++++.++.++|+...+  ++++++++++++++.+.
T Consensus       222 ~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  301 (382)
T PRK06108        222 DRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDA  301 (382)
T ss_pred             CCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            22   337899998 8999999999999988876654444566788999999999975432  56778889999999888


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       302 L~~  304 (382)
T PRK06108        302 LRA  304 (382)
T ss_pred             HHh
Confidence            864

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.62  E-value=6.7e-15  Score=126.99  Aligned_cols=148  Identities=17%  Similarity=0.181  Sum_probs=109.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p  118 (195)
                      ++.|++.++.     ++.+|++....+.+|. +++.+.+++|.++|++||++||.||+|.++.+.+. +...... +..+
T Consensus       152 ~~~l~~~~~~-----~~~~v~l~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~  224 (384)
T PRK06348        152 VKKLEALITS-----KTKAIILNSPNNPTGA-VFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLAGMPE  224 (384)
T ss_pred             HHHHHHhhCc-----CccEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC-ccchhhcCCCcC
Confidence            5777776652     3445666666778885 55788999999999999999999999998855432 2222111 2223


Q ss_pred             c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      .   +.+|||+++ .|+|+||+++++++++.+.......+++.+++++.++..+|+..++  +++++.++++.+++.+.|
T Consensus       225 ~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L  304 (384)
T PRK06348        225 RTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRI  304 (384)
T ss_pred             cEEEEecchhccCCccccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   337799999 8999999999999988887655555677889999999888875432  456777888888888888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       305 ~~  306 (384)
T PRK06348        305 ES  306 (384)
T ss_pred             hc
Confidence            64

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.62  E-value=1.2e-14  Score=124.29  Aligned_cols=132  Identities=11%  Similarity=0.098  Sum_probs=99.4

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc--cccCCCcccccccCCCcc--hhhhccccCCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF--GRTGDNYWGFEMHGVSPD--IVTMAKGIANG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~--gr~G~~~~~~~~~~~~pd--i~~~sK~l~~G  130 (195)
                      +..+|++++ .+|+|++. +.+.|++|.++|++||+++|+||+|..+  +..|. . ....++  +|  +.++||++ +|
T Consensus       136 ~~~lIiitg-~s~~G~v~-~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~-~-~~~~~~--~divv~s~SKal-aG  208 (346)
T TIGR03576       136 GTSLVVITG-STMDLKVV-SEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQ-P-PALDLG--ADLVVTSTDKLM-DG  208 (346)
T ss_pred             CceEEEEEC-CCCCCccc-CHHHHHHHHHHHHHcCCEEEEECCccccccccCCC-C-CHHHcC--CcEEEeccchhc-cc
Confidence            345677776 58999865 4677999999999999999999999832  11232 1 122233  34  44778966 46


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      +++|++++++++++.+.+....+.++.+|+++++++++|+....+.+++.++++.+++.+.|+
T Consensus       209 ~r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~  271 (346)
T TIGR03576       209 PRGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFD  271 (346)
T ss_pred             cceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999988765555557888999999999876556678889999888887765

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK07777 aminotransferase; Validated

Probab=99.61  E-value=9.9e-15  Score=125.94  Aligned_cols=149  Identities=19%  Similarity=0.180  Sum_probs=107.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p  118 (195)
                      +++|++.+.     .++.+|++.+..+.+|... +.+.+++|.++|++|++++|+||+|.++.+.+..+.++..+ +...
T Consensus       149 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  222 (387)
T PRK07777        149 LDALRAAVT-----PRTRALIVNSPHNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRE  222 (387)
T ss_pred             HHHHHHhcC-----cccEEEEEcCCCCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcC
Confidence            567777654     2456788888888889744 78899999999999999999999999876545322233222 2222


Q ss_pred             c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      +   +.+|||.++ .|+++||+++++++++.+.......++..+++.+.++..+++..+.  +.+++.++++++++.+.|
T Consensus       223 ~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  302 (387)
T PRK07777        223 RTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGL  302 (387)
T ss_pred             cEEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            2   347799999 8999999999999888887655444555555566666666654322  456788999999999988


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       303 ~~  304 (387)
T PRK07777        303 AE  304 (387)
T ss_pred             Hh
Confidence            65

>PLN02368 alanine transaminase

Probab=99.60  E-value=2.1e-14  Score=125.22  Aligned_cols=154  Identities=12%  Similarity=0.110  Sum_probs=110.8

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-Cccccccc--C
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-NYWGFEMH--G  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~~~~--~  115 (195)
                      ++.|++.++....+ .+++++++-...+.+|. +++.+.+++|.++|++||++||+||+|..+.+.|. .+.+....  +
T Consensus       194 ~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~-v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~  272 (407)
T PLN02368        194 VNNLRQSVAQARSKGITVRAMVIINPGNPTGQ-CLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMD  272 (407)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEEECCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhh
Confidence            57788877642111 15666666555788995 66889999999999999999999999998866552 12232111  1


Q ss_pred             C------Ccchh---hhcccc-C-CCCceEEEEe---cHHHHHHhhccccccCCCchHHHHHHHHHHHHhh---------
Q psy13322        116 V------SPDIV---TMAKGI-A-NGFPMGAVVT---TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI---------  172 (195)
Q Consensus       116 ~------~pdi~---~~sK~l-~-~G~~~g~v~~---~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~---------  172 (195)
                      +      .+.++   +|||++ + .|||+||+++   ++++++.+.... ..+++.|.+++.++.++|+.-         
T Consensus       273 ~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~  351 (407)
T PLN02368        273 MGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-SIALSPNVSGQIFMGLMVNPPKPGDISYDQ  351 (407)
T ss_pred             hcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh-cccCCCCcHHHHHHHHHhCCCCCCCccHHH
Confidence            1      12333   669999 6 8999999994   888888877653 345677889999999998631         


Q ss_pred             --cc-hhHHHHHHHHHHHHHHHhhcC
Q psy13322        173 --KD-EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       173 --~~-~~~~~~l~~~~~~l~~~L~~l  195 (195)
                        ++ .++.+.++++++.+.+.|+++
T Consensus       352 ~~~~~~~~~~~~~~rr~~~~~~L~~~  377 (407)
T PLN02368        352 FVRESKGILESLRRRARMMTDGFNSC  377 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence              11 346788999999999999863

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.59  E-value=2e-14  Score=122.45  Aligned_cols=152  Identities=16%  Similarity=0.117  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCCC
Q psy13322         40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~~  117 (195)
                      +++|++.+++...++ +..+|++....+++|. .++.+.+++|.++|++||+++|+||+|.++......+.. .....-.
T Consensus       132 ~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~-~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  210 (363)
T PF00155_consen  132 PEALEEALDELPSKGPRPKAVLICNPNNPTGS-VLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDED  210 (363)
T ss_dssp             HHHHHHHHHTSHTTTETEEEEEEESSBTTTTB-B--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTT
T ss_pred             ccccccccccccccccccceeeeccccccccc-ccccccccchhhhhcccccceeeeeceeccccCCCccCccccccccc
Confidence            688999988754333 4678889889999996 567888999999999999999999999987543221111 1212223


Q ss_pred             cch---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc----c-hhHHHHHHHHHHHH
Q psy13322        118 PDI---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK----D-EELQYNCKQVSAQI  188 (195)
Q Consensus       118 pdi---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~----~-~~~~~~l~~~~~~l  188 (195)
                      +++   -++||++| .|+|+|++++++++++.+.........  +++.+.++.+++....    . ++++++++++.+++
T Consensus       211 ~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l  288 (363)
T PF00155_consen  211 DNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQRSGLS--SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLL  288 (363)
T ss_dssp             STEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeeeccccccccccccccccchhhhhhhhhhccccccc--cchhhHHHHHhhhcccccccccccchhhHHHHHHHH
Confidence            332   26689999 899999999999999988765433333  6666666666665432    1 56788899999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|++
T Consensus       289 ~~~L~~  294 (363)
T PF00155_consen  289 REALEE  294 (363)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999865

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK09082 methionine aminotransferase; Validated

Probab=99.59  E-value=8.5e-15  Score=126.44  Aligned_cols=149  Identities=17%  Similarity=0.195  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~~~p  118 (195)
                      ++++++.+.     .++.+|++....+.+|.. ++.+.+++|.++|++||+++|+||+|..+.+.+..+.++.. .+..+
T Consensus       153 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~~-~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~  226 (386)
T PRK09082        153 WQRFAAAIS-----PRTRLIILNTPHNPSGTV-WSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRE  226 (386)
T ss_pred             HHHHHHhcC-----ccceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccC
Confidence            566776664     255677777778888964 46788999999999999999999999877554432222222 23333


Q ss_pred             ch---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        119 DI---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 di---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      .+   -+|||++| .|+|+||+++++++++.+........++.+++++.++.+.++..++  +++++.++++++++.+.|
T Consensus       227 ~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L  306 (386)
T PRK09082        227 RAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAAL  306 (386)
T ss_pred             cEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            33   37799998 8999999999999998887765445667788888887777763221  456777889999999888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       307 ~~  308 (386)
T PRK09082        307 AN  308 (386)
T ss_pred             Hh
Confidence            64

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.59  E-value=3.2e-14  Score=119.46  Aligned_cols=139  Identities=19%  Similarity=0.204  Sum_probs=109.0

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc----ccccCCCcchhhhccccC-
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG----FEMHGVSPDIVTMAKGIA-  128 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~----~~~~~~~pdi~~~sK~l~-  128 (195)
                      +++++|++++..+++|. ..+.+.+++|+++|+++|+++|+||+|++++..+. ...    ....+....+.+++|.++ 
T Consensus       131 ~~~~~v~i~~~~~~tG~-~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~K~~~~  208 (350)
T cd00609         131 PKTKLLYLNNPNNPTGA-VLSEEELEELAELAKKHGILIISDEAYAELVYDGE-PPPALALLDAYERVIVLRSFSKTFGL  208 (350)
T ss_pred             ccceEEEEECCCCCCCc-ccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCc-ccccccCcCccCcEEEEeecccccCC
Confidence            47889999998888997 45678899999999999999999999998776554 221    111122222346789999 


Q ss_pred             CCCceEEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhhc
Q psy13322        129 NGFPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--KDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       129 ~G~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +|+++|++++++ ++.+.+.......+++.++.++.++.++|+..  ..+.+.++++++.+++.+.|++
T Consensus       209 ~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  277 (350)
T cd00609         209 PGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKE  277 (350)
T ss_pred             cccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            889999999999 78888877666666778889999999998876  2356778899999999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.58  E-value=3.7e-14  Score=123.42  Aligned_cols=149  Identities=15%  Similarity=0.224  Sum_probs=106.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP-  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p-  118 (195)
                      ++.|++.+.+     ++.+|++....+.+|. +++.+.+++|.++|++||++||+||+|..+.+.|..+.++..+...+ 
T Consensus       168 ~~~l~~~~~~-----~~k~v~l~~P~NPTG~-~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~  241 (405)
T PRK06207        168 LDQLEEAFKA-----GVRVFLFSNPNNPAGV-VYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPE  241 (405)
T ss_pred             HHHHHHhhhh-----cCeEEEECCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcC
Confidence            5777777653     3445666666788885 55788899999999999999999999998866564222222222222 


Q ss_pred             c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHh
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--DEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~~~~~~~l~~~~~~l~~~L  192 (195)
                      .   +-+|||+++ .|+|+||+++++++++.+.........+.+.+++.++.++|+...  -++..+.++++++.+.+.|
T Consensus       242 ~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L  321 (405)
T PRK06207        242 NVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVL  321 (405)
T ss_pred             cEEEEecchhhccCcccceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   337799999 999999999999998888765444445566788888888886421  1345566777778888777


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       322 ~~  323 (405)
T PRK06207        322 RG  323 (405)
T ss_pred             hc
Confidence            64

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.58  E-value=3.6e-14  Score=123.04  Aligned_cols=149  Identities=16%  Similarity=0.142  Sum_probs=107.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p  118 (195)
                      ++.+++.+.     +++++|++....+.+|. +++.+.+++|.++|++||++||+||+|..+-+.+....++... +...
T Consensus       156 ~~~l~~~~~-----~~~k~v~l~~P~NPTG~-~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~  229 (399)
T PRK07681        156 LELIPEEIA-----DKAKMMILNFPGNPVPA-MAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKE  229 (399)
T ss_pred             HHHHHHhcc-----ccceEEEEeCCCCCcCc-CCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcc
Confidence            456665553     24566777655778895 5678899999999999999999999999875544312122111 1111


Q ss_pred             ---chhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        119 ---DIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 ---di~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                         .+-+|||.++ .|+|+||+++++++++.+........++.+.+++.++.++|+...+  ++.++.++++++.+.+.|
T Consensus       230 ~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  309 (399)
T PRK07681        230 VGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGF  309 (399)
T ss_pred             cEEEEeecccccCCccceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence               2347799998 9999999999999998887654445566778888888888865322  455677888888888888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       310 ~~  311 (399)
T PRK07681        310 RT  311 (399)
T ss_pred             HH
Confidence            64

>PRK12414 putative aminotransferase; Provisional

Probab=99.58  E-value=3e-14  Score=123.05  Aligned_cols=149  Identities=15%  Similarity=0.181  Sum_probs=109.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p  118 (195)
                      ++.|++.++     .++++|++....+.+|. +++++.+++|.++|++||+++|+||+|..+.+.|....++... +...
T Consensus       152 ~~~l~~~l~-----~~~~~v~i~~p~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~  225 (384)
T PRK12414        152 WDEVAAAIT-----PRTRMIIVNTPHNPSAT-VFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAE  225 (384)
T ss_pred             HHHHHhhcC-----cccEEEEEcCCCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccC
Confidence            466766664     25667777777888896 4568889999999999999999999999875555312122111 2222


Q ss_pred             c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhh
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~  193 (195)
                      .   +-+|||.++ .|+|+||+++++++++.+.......+++.+.+++.++.++|+.-. ..++++.++++++.+.+.|+
T Consensus       226 ~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~  305 (384)
T PRK12414        226 RSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELA  305 (384)
T ss_pred             cEEEEecccccccCccceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            3   337799998 899999999999998888776544567778888888888886422 13467788899999988886


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       306 ~  306 (384)
T PRK12414        306 G  306 (384)
T ss_pred             h
Confidence            4

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.57  E-value=3.1e-14  Score=123.23  Aligned_cols=149  Identities=16%  Similarity=0.141  Sum_probs=108.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-C---
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-G---  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~---  115 (195)
                      +++|++.+.     .++.+|++...++.+|. +++.+.+++|.++|++||+++|+||+|..+.+.+....+.... +   
T Consensus       160 ~~~l~~~~~-----~~~k~i~l~~P~NPtG~-~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~  233 (394)
T PRK05942        160 LSSIPEEVA-----QQAKILYFNYPSNPTTA-TAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKD  233 (394)
T ss_pred             HHHHHHhcc-----ccceEEEEcCCCCCCCC-cCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccc
Confidence            566766654     25567777656888895 5678889999999999999999999998775544322222111 1   


Q ss_pred             CCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        116 VSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       116 ~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      ....+-+|||.++ .|+++||+++++++++.+........++.+++++.++.++|+..++  ++.+++++++.+++.+.|
T Consensus       234 ~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L  313 (394)
T PRK05942        234 IGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGL  313 (394)
T ss_pred             cEEEEecchhccCChhhheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            1223457899998 8999999999999998887654434556677888888888875432  467788888899998888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       314 ~~  315 (394)
T PRK05942        314 GE  315 (394)
T ss_pred             HH
Confidence            64

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.57  E-value=5.2e-14  Score=121.80  Aligned_cols=151  Identities=19%  Similarity=0.187  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.|++.+++..  +++++|++....+.+|. .++.+.+++|.++|++||+++|+||+|..+.+.|..+.+..... ...
T Consensus       153 ~~~l~~~~~~~~--~~~~~i~l~~P~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~  228 (391)
T PRK07309        153 PEMLEKAILEQG--DKLKAVILNYPANPTGV-TYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL-PDQ  228 (391)
T ss_pred             HHHHHHHhhccC--CCeEEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhc-cCC
Confidence            577888876542  35777877755778885 55678899999999999999999999998865553222222111 112


Q ss_pred             ---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHhh
Q psy13322        120 ---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--DEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 ---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~~~~~~~l~~~~~~l~~~L~  193 (195)
                         +-+|||.+| .|+++||+++++++++.+.......+.+.+++++.++.++|+...  ...++++++++++++.+.|+
T Consensus       229 ~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  308 (391)
T PRK07309        229 TILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMT  308 (391)
T ss_pred             EEEEecChhhccCccceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH
Confidence               337799998 899999999999998888754333445667888888888887532  24556788888888988886


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       309 ~  309 (391)
T PRK07309        309 D  309 (391)
T ss_pred             H
Confidence            4

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.57  E-value=3.6e-14  Score=122.21  Aligned_cols=149  Identities=15%  Similarity=0.169  Sum_probs=105.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCC-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVS-  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~-  117 (195)
                      ++++++.+.     .++++|++....+.+|. .++.+.+++|.++|++||++||+||+|..+.+.+....++... +.. 
T Consensus       154 ~~~l~~~~~-----~~~~~v~i~~P~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~  227 (383)
T TIGR03540       154 FDAIPEDIA-----KKAKLMFINYPNNPTGA-VAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKD  227 (383)
T ss_pred             HHHHHhhcc-----ccceEEEEeCCCCCcCc-cCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCccc
Confidence            556666554     24556776655778885 5688999999999999999999999999775544322222111 111 


Q ss_pred             --cchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        118 --PDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       118 --pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                        -.+.+|||.+| .|+|+||+++++++++.+.........+.+.+++.++.++|+...+  +++++.++++.+.+.+.|
T Consensus       228 ~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L  307 (383)
T TIGR03540       228 VGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEAL  307 (383)
T ss_pred             CEEEEEecccccCCccceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              22448899998 8999999999999988876543333344566778888888865322  456778889999998888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       308 ~~  309 (383)
T TIGR03540       308 KK  309 (383)
T ss_pred             Hh
Confidence            75

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK08068 transaminase; Reviewed

Probab=99.57  E-value=4.4e-14  Score=122.08  Aligned_cols=149  Identities=14%  Similarity=0.110  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~p  118 (195)
                      ++++++.+.     .++++|++-...+.+|. .++.+.+++|.++|++||+++|+||+|..+.+.+....++ ...+..+
T Consensus       157 ~~~l~~~~~-----~~~~~v~l~~P~NPTG~-~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~  230 (389)
T PRK08068        157 YTKIPEEVA-----EKAKLMYLNYPNNPTGA-VATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKD  230 (389)
T ss_pred             HHHHHHhcc-----ccceEEEEECCCCCCCC-cCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccC
Confidence            456666553     24456666544678885 6678899999999999999999999998876655212122 2122222


Q ss_pred             c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      .   +-+|||++| .|+|+||+++++++++.+.........+.++..+.++.+++....+  +.+++.++++++++.+.|
T Consensus       231 ~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L  310 (389)
T PRK08068        231 VGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISAC  310 (389)
T ss_pred             CEEEEecchhccCCccceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   347899998 8999999999999998887654333344455566666676643222  467788899999998888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       311 ~~  312 (389)
T PRK08068        311 RE  312 (389)
T ss_pred             HH
Confidence            64

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.57  E-value=4.9e-14  Score=122.97  Aligned_cols=148  Identities=16%  Similarity=0.185  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCC-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVS-  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~-  117 (195)
                      ++.+++.+.     .++++|++....+.+|. +++.+.+++|.++|++||++||+||+|..+.+.+. ..++... +.. 
T Consensus       169 ~~~l~~~~~-----~~~k~i~l~nP~NPTG~-v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~-~~s~~~~~~~~~  241 (410)
T PRK06290        169 LDSIPKDIK-----EKAKLLYLNYPNNPTGA-VATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK-PLSFLSVPGAKE  241 (410)
T ss_pred             HHHHHHhhc-----ccceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC-CcChhcCCCccc
Confidence            566666554     24567777755788995 55788999999999999999999999998754443 2222111 111 


Q ss_pred             --cchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhh
Q psy13322        118 --PDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       118 --pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~  193 (195)
                        .-+-+|||+++ .|+|+||+++++++++.+.......+.+.+.+++.++.++|+..+ .+++++.++++++++.+.|+
T Consensus       242 ~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~  321 (410)
T PRK06290        242 VGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILN  321 (410)
T ss_pred             cEEEEeechhhcCCchhheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence              11347799998 899999999999999888765444445555678888888886432 24577888899999998886


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       322 ~  322 (410)
T PRK06290        322 E  322 (410)
T ss_pred             h
Confidence            5

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.56  E-value=4.5e-14  Score=121.71  Aligned_cols=149  Identities=14%  Similarity=0.126  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CC--
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GV--  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~--  116 (195)
                      ++.+++.+.     .++.+|++....+.+|. .++.+.+++|.++|++||++||+||+|..+.+.|....++... +.  
T Consensus       156 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  229 (385)
T PRK09276        156 LDAIPEDVA-----KKAKLMFINYPNNPTGA-VADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKD  229 (385)
T ss_pred             HHHHHHhcc-----ccceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcC
Confidence            455555443     24566777766788896 5678889999999999999999999999875544312122111 11  


Q ss_pred             -CcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        117 -SPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       117 -~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                       .-.+.+|||.+| .|+|+||+++++++++.+.........+.+++.+.++.++|+..+.  +++++.++++++++.+.|
T Consensus       230 ~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  309 (385)
T PRK09276        230 VGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGL  309 (385)
T ss_pred             CEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence             223458899998 8999999999999988887654333344566777888888764322  456777888889998888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       310 ~~  311 (385)
T PRK09276        310 RK  311 (385)
T ss_pred             Hh
Confidence            65

>PRK08175 aminotransferase; Validated

Probab=99.56  E-value=7.1e-14  Score=121.06  Aligned_cols=152  Identities=15%  Similarity=0.162  Sum_probs=108.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .++|+++++...  .++++|++....+.+|. +++.+.+++|.++|++||+++|+||+|..+-+.|....++....-..+
T Consensus       151 ~~~l~~~l~~~~--~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~  227 (395)
T PRK08175        151 FNELERAIRESY--PKPKMMILGFPSNPTAQ-CVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKD  227 (395)
T ss_pred             HHHHHHHHhhcc--CCceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCccc
Confidence            577888777543  35677887766778884 667888999999999999999999999877554431112211111123


Q ss_pred             ----hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        120 ----IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       120 ----i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                          +.+|||.+| .|+++||+++++++++.+.+......++.++.++.++.++|+..+.  +.+++.++++.+++.+.|
T Consensus       228 ~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L  307 (395)
T PRK08175        228 VAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGL  307 (395)
T ss_pred             CEEEEeeccccccCcchhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence                347799998 8999999999999998887654333455566677877888864322  456777888888898888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       308 ~~  309 (395)
T PRK08175        308 HE  309 (395)
T ss_pred             HH
Confidence            64

>PRK08960 hypothetical protein; Provisional

Probab=99.56  E-value=7.1e-14  Score=120.70  Aligned_cols=146  Identities=15%  Similarity=0.144  Sum_probs=105.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.+     +...+++-...+.+|. .++.+.+++|.++|++||+++|+||+|.++.+.+. ....  ..+.++
T Consensus       155 ~~~l~~~~~~-----~~~~i~i~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~--~~~~~~  225 (387)
T PRK08960        155 PALVERHWNA-----DTVGALVASPANPTGT-LLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AASV--LEVDDD  225 (387)
T ss_pred             HHHHHHHhCc-----cceEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCCh--hhccCC
Confidence            5667666552     2334444444678886 45678899999999999999999999998754332 2122  234456


Q ss_pred             hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh-hcc--hhHHHHHHHHHHHHHHHh
Q psy13322        120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV-IKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~-~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      ++   +|||.+| .|+|+||+++++++++.+.......+.+.+.+++.++.++|+. ..+  ..+++.++++++.+.+.|
T Consensus       226 vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L  305 (387)
T PRK08960        226 AFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPAL  305 (387)
T ss_pred             EEEEeecccccCCcccEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            54   5799998 8999999999999988887654445566788898888888853 211  455677888888888888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       306 ~~  307 (387)
T PRK08960        306 RE  307 (387)
T ss_pred             Hh
Confidence            64

>PRK09148 aminotransferase; Validated

Probab=99.56  E-value=5.4e-14  Score=122.34  Aligned_cols=152  Identities=17%  Similarity=0.183  Sum_probs=109.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.++.+.  .+..+|++....+.+|. .++.+.+++|.++|++||++||+||+|..+.+.+....+.....-.++
T Consensus       152 ~~~l~~~~~~~~--~~~~~v~l~~P~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~  228 (405)
T PRK09148        152 FPALERAVRHSI--PKPIALIVNYPSNPTAY-VADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKD  228 (405)
T ss_pred             ccCHHHHHhhcc--ccceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccC
Confidence            456666666543  25567777766788895 557888999999999999999999999987554431112221211122


Q ss_pred             ----hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        120 ----IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       120 ----i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                          +-+|||.++ .|+|+||+++++++++.+.......+++.+++++.++.++|+..++  +.+++.++++++++.+.|
T Consensus       229 ~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L  308 (405)
T PRK09148        229 VTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESF  308 (405)
T ss_pred             cEEEEeccccccCCcchheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence                347899999 9999999999999998887654444566678888888888863222  456778889999998888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       309 ~~  310 (405)
T PRK09148        309 GR  310 (405)
T ss_pred             HH
Confidence            64

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.55  E-value=1.1e-13  Score=120.30  Aligned_cols=152  Identities=18%  Similarity=0.176  Sum_probs=105.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.+++..  .++.++++...++.+|. +++.+.+++|.++|++|+++||.||+|..+-+.+....+.....-.++
T Consensus       162 ~~~l~~~~~~~~--~~~~~i~~~~P~NPTG~-~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~  238 (403)
T PRK08636        162 FENLEKALRESS--PKPKYVVVNFPHNPTTA-TVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKD  238 (403)
T ss_pred             hhHHHHHHhhcc--CCceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccc
Confidence            446677776543  35677777766788885 667888999999999999999999999987554431222222211223


Q ss_pred             ----hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        120 ----IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       120 ----i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                          +.+|||.+| .|+|+||+++++++++.+.+......++.+++++.++..+++...+  +++++.++++.+.+.+.|
T Consensus       239 ~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  318 (403)
T PRK08636        239 VAVESYTLSKSYNMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESF  318 (403)
T ss_pred             cEEEEEecccccCCccceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence                235799997 8999999999999988877654333445556666666666653221  356677788888888887


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       319 ~~  320 (403)
T PRK08636        319 AN  320 (403)
T ss_pred             HH
Confidence            64

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.55  E-value=9.4e-14  Score=120.12  Aligned_cols=149  Identities=19%  Similarity=0.190  Sum_probs=106.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p  118 (195)
                      ++.|++.+.     +++++|++-..++.+|. ..+.+.+++|.++|++||+++|+||+|..+.+.+....+.... +..+
T Consensus       150 ~~~l~~~i~-----~~~klv~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  223 (389)
T PRK05957        150 PEAIEQAIT-----PKTRAIVTISPNNPTGV-VYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGN  223 (389)
T ss_pred             HHHHHHhcC-----cCceEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccC
Confidence            567777664     24556677667888886 4567789999999999999999999999885543212122111 2222


Q ss_pred             c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHh
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--DEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~~~~~~~l~~~~~~l~~~L  192 (195)
                      .   +-+|||.+| .|+|+||+++++++++.+.........+.+.+++.++..+|+.-.  -++..+.++++++++.+.|
T Consensus       224 ~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L  303 (389)
T PRK05957        224 HTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSL  303 (389)
T ss_pred             cEEEEecchhhccCccceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            2   447899998 899999999999999988765443444556788888888886422  1455677888888888888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       304 ~~  305 (389)
T PRK05957        304 GQ  305 (389)
T ss_pred             Hh
Confidence            64

>PRK08912 hypothetical protein; Provisional

Probab=99.55  E-value=8.3e-14  Score=120.20  Aligned_cols=149  Identities=23%  Similarity=0.247  Sum_probs=106.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~~~p  118 (195)
                      ++.|++.+.     .++++|++....+.+|. +++.+.+++|.++|++|++++|+||+|..+.+.+..+.+... .+..+
T Consensus       149 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  222 (387)
T PRK08912        149 RAALAAAFS-----PRTKAVLLNNPLNPAGK-VFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRE  222 (387)
T ss_pred             HHHHHHHhC-----ccceEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccC
Confidence            466776664     24456666666788885 556788999999999999999999999877554421212211 12222


Q ss_pred             c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      .   +-++||.++ .|+|+||+++++++++.+.......+++.++..+.++.++|...++  ++++++++++++++.+.|
T Consensus       223 ~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  302 (387)
T PRK08912        223 RTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGL  302 (387)
T ss_pred             ceEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   236789999 9999999999999988886654444566677777777777753222  467788999999999888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      +.
T Consensus       303 ~~  304 (387)
T PRK08912        303 RR  304 (387)
T ss_pred             Hh
Confidence            75

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.54  E-value=1.2e-13  Score=119.30  Aligned_cols=149  Identities=18%  Similarity=0.221  Sum_probs=106.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc--CCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH--GVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~--~~~  117 (195)
                      ++.+++.+.     .++++|++....+.+|. +++.+.+++|.++|++||+++|+||+|..+.+.|..+.+....  +..
T Consensus       154 ~~~l~~~l~-----~~~~~v~~~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  227 (393)
T PRK05764        154 VEQLEAAIT-----PKTKALILNSPSNPTGA-VYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELR  227 (393)
T ss_pred             HHHHHHhhC-----ccceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCc
Confidence            466777664     24456666666677885 4567889999999999999999999999775544322222211  222


Q ss_pred             cc---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHH
Q psy13322        118 PD---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       118 pd---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~  191 (195)
                      +.   +.+|||.++ .|+++||+++++++++.+.......+.+.+++++.++.++|+...+  +++++.++++.+.+++.
T Consensus       228 ~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  307 (393)
T PRK05764        228 DRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDG  307 (393)
T ss_pred             CCEEEEecCcccccCccceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence            22   336899999 8999999999999988886654444556788999888888863221  45677788888888888


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       308 L~~  310 (393)
T PRK05764        308 LNE  310 (393)
T ss_pred             Hhh
Confidence            864

>KOG1357|consensus

Probab=99.54  E-value=7.1e-14  Score=119.97  Aligned_cols=150  Identities=19%  Similarity=0.157  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHhc----CCC----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--ccccCC
Q psy13322         37 NKFYEQLVNAFQYN----VPI----TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG--FGRTGD  106 (195)
Q Consensus        37 ~~~~~~l~~~l~~~----~~~----~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g--~gr~G~  106 (195)
                      ++++++||++|.+.    .|+    .+...||+|.++||.|.++.    |+++.++++||.++|++||+|+.  .|++|.
T Consensus       250 HNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tGr  325 (519)
T KOG1357|consen  250 HNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATGR  325 (519)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCCc
Confidence            34478888888763    121    24568999999999999999    89999999999999999999983  345554


Q ss_pred             CcccccccCCCc---ch--hhhccccCCCCceEEEEecHHHHHHhhccccccCC--CchHHHHHHHHHHHHhhcc-----
Q psy13322        107 NYWGFEMHGVSP---DI--VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTF--GGNPVGCVIASTVLDVIKD-----  174 (195)
Q Consensus       107 ~~~~~~~~~~~p---di--~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~--~~~p~~~~aa~aal~~~~~-----  174 (195)
                      +  ..+.+++.|   ||  .||.|+++++  .|++.++++++++++......++  ..+|..+...+.+++.+.-     
T Consensus       326 g--vce~~g~d~~dvDImMGtftKSfga~--GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~  401 (519)
T KOG1357|consen  326 G--VCEYFGVDPEDVDIMMGTFTKSFGAA--GGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTN  401 (519)
T ss_pred             c--eeeccCCCchhheeecceehhhcccc--cceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCccc
Confidence            1  346667755   32  3778999832  37999999999999876543333  3456666667778887631     


Q ss_pred             --hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 --EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 --~~~~~~l~~~~~~l~~~L~~  194 (195)
                        .+..+++.+|..+++..|++
T Consensus       402 ~g~~k~~~l~~ns~yfr~~l~~  423 (519)
T KOG1357|consen  402 RGRQKIERLAENSRYFRWELQK  423 (519)
T ss_pred             HHHHHHHHHHhhhHHHHHhhhc
Confidence              35668899999999988875

>PRK07550 hypothetical protein; Provisional

Probab=99.53  E-value=1.5e-13  Score=118.55  Aligned_cols=149  Identities=15%  Similarity=0.161  Sum_probs=105.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~p  118 (195)
                      .++|++.+++     ++.+|++....+.+|. .++.+.+++|.++|++||+++|+||+|.+|...+...... ...+...
T Consensus       153 ~~~l~~~~~~-----~~~~v~~~~P~NPtG~-~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~  226 (386)
T PRK07550        153 PAAAEALITP-----RTRAIALVTPNNPTGV-VYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDD  226 (386)
T ss_pred             HHHHHHHhcc-----cCcEEEEeCCCCCCCc-ccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccc
Confidence            5677777753     3345455454567886 4568889999999999999999999999874322111111 1111122


Q ss_pred             c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      +   +.+|||.++ .|+++|++++++++++.+.......+.+.+.+++.++..+++.+++  ++.++.++++++++.+.|
T Consensus       227 ~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  306 (386)
T PRK07550        227 TLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVF  306 (386)
T ss_pred             cEEEEecchhhccCcccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   447899999 8999999999999888877655555566788888888888875432  456778888898888888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      +.
T Consensus       307 ~~  308 (386)
T PRK07550        307 AR  308 (386)
T ss_pred             Hh
Confidence            64

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.52  E-value=1.5e-13  Score=118.58  Aligned_cols=139  Identities=14%  Similarity=0.095  Sum_probs=97.2

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCC-cccccccCCC-cc---hhhhccccC-
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDN-YWGFEMHGVS-PD---IVTMAKGIA-  128 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~-~~~~~~~~~~-pd---i~~~sK~l~-  128 (195)
                      +..+|++-+..+.+|. +++.+.+++|.++|++||++||+||+|..|.+.+.. ..++....-. +.   +-+|||++| 
T Consensus       165 ~~k~i~l~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~  243 (388)
T PRK07366        165 QARLMVLSYPHNPTTA-IAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNM  243 (388)
T ss_pred             cceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCC
Confidence            4556777777888996 667889999999999999999999999988654431 1112111111 12   237899998 


Q ss_pred             CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322        129 NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       129 ~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .|+|+||+++++++++.+........++..+..+.+++++|...++  +++++.++++++++.+.|++
T Consensus       244 ~GlRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~  311 (388)
T PRK07366        244 GGFRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQ  311 (388)
T ss_pred             cchhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988887654333333334444555666643221  46678888999999888864

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.51  E-value=3.7e-13  Score=113.79  Aligned_cols=148  Identities=20%  Similarity=0.226  Sum_probs=105.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC---C
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG---V  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~---~  116 (195)
                      .+++++++.+.....+.++|+++++++.+|...+    +++|.++|++||+++|+||+|+ +|..+..........   .
T Consensus       117 ~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~  191 (349)
T cd06454         117 MEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTD  191 (349)
T ss_pred             HHHHHHHHHHhhccCCCeEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccc
Confidence            4567777765321136789999999999998765    8999999999999999999996 443332111111111   2


Q ss_pred             Ccchh--hhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHH
Q psy13322        117 SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       117 ~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~  191 (195)
                      ..|++  +++|.++.  +.|++++++++++.+....  +..+.+.++..++++.++|+.+.+ ++..++++++++++.+.
T Consensus       192 ~~~i~~~s~sK~~~~--~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~  269 (349)
T cd06454         192 DVDIIMGTLGKAFGA--VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRG  269 (349)
T ss_pred             cCcEEEeechhhhcc--cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            34554  56899983  3478888888887776543  223345678888899999988755 67789999999999998


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       270 l~~  272 (349)
T cd06454         270 LKE  272 (349)
T ss_pred             HHh
Confidence            864

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.51  E-value=3.6e-13  Score=116.35  Aligned_cols=148  Identities=18%  Similarity=0.252  Sum_probs=105.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p  118 (195)
                      ++.|++.+.     .++.+|++....+.+|. .++.+.+++|.++|+++|+++|+||++.+|.+.+....+...+ +..+
T Consensus       152 ~~~l~~~~~-----~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~  225 (397)
T PRK07568        152 KEEIEKLIT-----PKTKAILISNPGNPTGV-VYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLED  225 (397)
T ss_pred             HHHHHHhcC-----ccceEEEEECCCCCCCc-cCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcC
Confidence            466666654     24556666555677885 6677889999999999999999999999987665422222222 2234


Q ss_pred             chh---hhccccC-CCCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHH
Q psy13322        119 DIV---TMAKGIA-NGFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       119 di~---~~sK~l~-~G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~  191 (195)
                      +++   +|||.++ .|+++||++++ +++++.+..... .+++.+++++.++.++|+..+.  +++++.++++++.+.+.
T Consensus       226 ~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  304 (397)
T PRK07568        226 RVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEE  304 (397)
T ss_pred             CEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            443   7799999 79999999985 678776654332 2456678888888888864322  45677788899999888


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       305 L~~  307 (397)
T PRK07568        305 LNK  307 (397)
T ss_pred             Hhc
Confidence            864

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.50  E-value=3.8e-13  Score=116.50  Aligned_cols=149  Identities=12%  Similarity=0.068  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-Ccccc-c---cc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-NYWGF-E---MH  114 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~-~---~~  114 (195)
                      ++.|++.+.     .+++++++-...+.+|. +++++.+++|.++|++|+++||+||+|..+.+.+. ...+. .   ..
T Consensus       156 ~~~l~~~~~-----~~~k~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  229 (396)
T PRK09147        156 FDAVPAEVW-----ARTQLLFVCSPGNPTGA-VLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAEL  229 (396)
T ss_pred             HHHHHHHHh-----hccEEEEEcCCCCCcCc-cCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhcccc
Confidence            566666554     24556666666788896 66889999999999999999999999998755442 11111 1   11


Q ss_pred             CC--Ccc---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHH
Q psy13322        115 GV--SPD---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQ  187 (195)
Q Consensus       115 ~~--~pd---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~  187 (195)
                      +.  .+.   +-+|||.++ .|+|+||+++++++++.+.......+++.+++++.++.+++..-+ -.+.++.++++++.
T Consensus       230 ~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~  309 (396)
T PRK09147        230 GRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDA  309 (396)
T ss_pred             CccccccEEEEeccccccCCccceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence            11  123   337799987 899999999999998887654433455677888888888774211 13456777888888


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      +.+.|++
T Consensus       310 ~~~~L~~  316 (396)
T PRK09147        310 VTPILAP  316 (396)
T ss_pred             HHHHHHH
Confidence            8777754

>PRK07683 aminotransferase A; Validated

Probab=99.50  E-value=4.4e-13  Score=115.90  Aligned_cols=148  Identities=17%  Similarity=0.205  Sum_probs=105.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p  118 (195)
                      .+.+++.+.     .++++|++....+.+|. .++.+.+++|.++|+++|+++|+||+|..+.+.+. ..+...+ +...
T Consensus       151 ~~~l~~~~~-----~~~~~i~i~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~  223 (387)
T PRK07683        151 AEALENAIT-----EKTRCVVLPYPSNPTGV-TLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPEMRE  223 (387)
T ss_pred             HHHHHHhcC-----cCceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccCCcC
Confidence            355666554     24456777767778886 55788899999999999999999999998754433 2222222 2222


Q ss_pred             c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      .   +.+|||.++ .|+|+||+++++++++.+.........+.+++++.++.+.|+....  +.++++++++.+.+.+.|
T Consensus       224 ~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  303 (387)
T PRK07683        224 KTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRL  303 (387)
T ss_pred             CeEEEeeccccccCccceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            2   337799999 9999999999999888877543323344567888888888864322  456777888888888888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       304 ~~  305 (387)
T PRK07683        304 IS  305 (387)
T ss_pred             HH
Confidence            64

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.50  E-value=1.8e-13  Score=118.33  Aligned_cols=149  Identities=12%  Similarity=0.160  Sum_probs=105.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+..     ++++|++....+.+|. ..+.+.+++|.++|+++++++|+||+|..+.+.+....+.........
T Consensus       156 ~~~l~~~i~~-----~~~~v~i~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  229 (391)
T PRK08361        156 PDELLELITK-----RTRMIVINYPNNPTGA-TLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNT  229 (391)
T ss_pred             HHHHHHhccc-----ccEEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCE
Confidence            5667766652     4556677766778895 557788999999999999999999999987554432222211111112


Q ss_pred             --hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHh
Q psy13322        120 --IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       120 --i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L  192 (195)
                        +.++||.+| .|+++||+++++++++.+.......+++.+++.+.++..+|+....    ++.++.++++.+.+.+.|
T Consensus       230 i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L  309 (391)
T PRK08361        230 ILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRL  309 (391)
T ss_pred             EEEecCchhcCCcHhhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence              237799999 8999999999999888776543334456678888888888864321    456677888888888888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       310 ~~  311 (391)
T PRK08361        310 KE  311 (391)
T ss_pred             Hh
Confidence            64

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.50  E-value=3.1e-13  Score=115.55  Aligned_cols=138  Identities=15%  Similarity=0.090  Sum_probs=101.6

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cc--cC-CCcc-h--hhhcccc
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EM--HG-VSPD-I--VTMAKGI  127 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~--~~-~~pd-i--~~~sK~l  127 (195)
                      ++++|++...++.+|. ..+.+.+++|.++|++||+++|+||+|..+.+.+. ..+. ..  .+ .... |  -+|||.+
T Consensus       142 ~~~~v~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~~vi~~~S~SK~~  219 (357)
T TIGR03539       142 GPDLIWLNSPGNPTGR-VLSVDELRAIVAWARERGAVVASDECYLELGWEGR-PVSILDPRVCGGDHTGLLAVHSLSKRS  219 (357)
T ss_pred             CccEEEEeCCCCCcCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCC-CccceecccCCCccccEEEEecccccc
Confidence            6778888888889996 55678899999999999999999999988766543 2111 10  01 1112 2  2779999


Q ss_pred             C-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        128 A-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       128 ~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      + .|+++||+++++++++.+........++.+++++.++.++|+.-. ....+..++++++++.+.|++
T Consensus       220 ~~~G~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~  288 (357)
T TIGR03539       220 NLAGYRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEK  288 (357)
T ss_pred             CCCceeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7 899999999999988887655444456678888888888885421 144567788888888888764

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.50  E-value=3.8e-13  Score=119.53  Aligned_cols=153  Identities=18%  Similarity=0.214  Sum_probs=105.3

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccC-CCcccccc--cC
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTG-DNYWGFEM--HG  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G-~~~~~~~~--~~  115 (195)
                      ++.|++.+...... .++++|++-...+.+|. +++.+.+++|.++|++||++||+||+|..+.+.+ ..+.++..  .+
T Consensus       202 ~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~-~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~  280 (481)
T PTZ00377        202 QEELEEAYEQAVRNGITPRALVVINPGNPTGQ-VLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLE  280 (481)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEECCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHh
Confidence            57788877643111 25665555455778895 6688999999999999999999999999876643 22222211  12


Q ss_pred             CCc------chh---hhcccc-C-CCCceEEEEe---cHHHHHHhhccccccCCCchHHHHHHHHHHHHhh---------
Q psy13322        116 VSP------DIV---TMAKGI-A-NGFPMGAVVT---TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI---------  172 (195)
Q Consensus       116 ~~p------di~---~~sK~l-~-~G~~~g~v~~---~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~---------  172 (195)
                      +.+      .++   +|||++ + +|||+||+++   ++++++.+.... ..+++.+++++.++.++|+..         
T Consensus       281 l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~  359 (481)
T PTZ00377        281 LPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLA-SINLCSNVVGQLMTGLMCNPPREGDASYPL  359 (481)
T ss_pred             hcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHh-heecCCChHHHHHHHHHhCCCCCCcccHHH
Confidence            221      233   679985 6 8999999986   888888887643 334567889999999998521         


Q ss_pred             --cc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        173 --KD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       173 --~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                        +. ..+.+.++++++.+.+.|++
T Consensus       360 ~~~~~~~~~~~~~~rr~~l~~~L~~  384 (481)
T PTZ00377        360 YKRERDAIFTSLKRRAELLTDELNK  384 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              11 23334568888888888865

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.50  E-value=4.4e-13  Score=114.27  Aligned_cols=147  Identities=14%  Similarity=0.113  Sum_probs=103.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.+     +++++++.+..+.+|. .++.+.+++|.++|++||+++|+||+|..+...+. ..+....+. +.
T Consensus       126 ~~~l~~~~~~-----~~~~i~i~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~-~~  197 (350)
T TIGR03537       126 LEKVEKSILE-----ETKIVWINYPHNPTGA-TAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP-PHSALEVGI-EN  197 (350)
T ss_pred             HHHHHHhhhh-----ccEEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC-CCchhhcCc-CC
Confidence            5677776653     3456666666778885 56788899999999999999999999986533222 222221221 22


Q ss_pred             h---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        120 I---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +   .++||.++ .|+++|++++++++.+.+.......+.+.+++++.++.+++..-+ ..+.+.+++++.+.+.+.|++
T Consensus       198 ~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~  277 (350)
T TIGR03537       198 VLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNK  277 (350)
T ss_pred             EEEEeecccccCCccccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   36789997 899999999999988888765444445566677777777775321 145677788888888887764

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.50  E-value=3.1e-13  Score=116.39  Aligned_cols=146  Identities=16%  Similarity=0.199  Sum_probs=100.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~~~p  118 (195)
                      ++.+++.+.     +++++|++....+.+|. +++.+.+++|.++|++||+++|+||++.+|.. +. ...... .....
T Consensus       147 ~~~l~~~~~-----~~~~~v~l~~p~NptG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~-~~~~~~~~~~~i  218 (380)
T PRK06225        147 PELVKENMD-----ENTRLIYLIDPLNPLGS-SYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EH-TLAAEYAPEHTV  218 (380)
T ss_pred             HHHHHhhcC-----CCceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cC-CchhhcCCCCEE
Confidence            466666554     24555554444667786 44778899999999999999999999987632 22 111111 01223


Q ss_pred             chhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .+.+|||.+| .|+++|++++++++++.+.... ..+++.+.+++.++.++|+...+  +.+.+.++++.+.+.+.|++
T Consensus       219 ~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  296 (380)
T PRK06225        219 TSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIV-INDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDE  296 (380)
T ss_pred             EEeechhhcCCccceeEEEecCHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3668899998 8999999999999988876542 34567788888888888865322  34445566667777777754

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.50  E-value=3.3e-13  Score=115.56  Aligned_cols=138  Identities=14%  Similarity=0.090  Sum_probs=101.8

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cc--cCCC-cc---hhhhcccc
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EM--HGVS-PD---IVTMAKGI  127 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~--~~~~-pd---i~~~sK~l  127 (195)
                      ++.+|++...++++|. +.+.+.+++|.++|++||++||.||+|..+...+. ..+. ..  .+.. +.   +-+|||.+
T Consensus       148 ~~~~v~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~  225 (364)
T PRK07865        148 RPALIWLNSPSNPTGR-VLGVDHLRKVVAWARERGAVVASDECYLELGWDAE-PVSILDPRVCGGDHTGLLAVHSLSKQS  225 (364)
T ss_pred             cceEEEEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCC-CCccccccccCCccceEEEEeechhcc
Confidence            5678888888888996 45678899999999999999999999998765553 2121 11  0111 22   33779999


Q ss_pred             C-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        128 A-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       128 ~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      + .|+++||+++++++++.+........++.+++.+.++.++|+..+ .++.++.++++.+.+.+.|++
T Consensus       226 ~~~GlRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  294 (364)
T PRK07865        226 NLAGYRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEA  294 (364)
T ss_pred             CCCceeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7 899999999999998888765444455667888888888876422 145667788888888888864

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.49  E-value=4.8e-13  Score=117.15  Aligned_cols=146  Identities=13%  Similarity=0.056  Sum_probs=107.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAE-SIQGVSGVKEFPRYFLRRAYELIKSN-NGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivE-pv~s~~G~~~~~~~~L~~l~~l~~~~-~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      ++.|++.+..     +++++++- ..++.+|. .++.+.+++|.++|++| +++||.||+|..|...+.  ..... ...
T Consensus       201 ~~~l~~~~~~-----~~k~i~~~p~p~NPTG~-~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~--~~~~~-~~~  271 (431)
T PRK15481        201 PEKLERALAQ-----GARAVILTPRAHNPTGC-SLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY--HSVIP-QTT  271 (431)
T ss_pred             HHHHHHHHhc-----CCCEEEECCCCCCCCCc-cCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC--CCCCc-CCC
Confidence            5778777752     34466666 46677885 55788899999999999 999999999998753331  11111 112


Q ss_pred             cch---hhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--c--hhHHHHHHHHHHHHHH
Q psy13322        118 PDI---VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--D--EELQYNCKQVSAQIIG  190 (195)
Q Consensus       118 pdi---~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~--~~~~~~l~~~~~~l~~  190 (195)
                      +.+   -+|||.++.||++||+++++++++.+.......+++.+.+++.++.++|+..+  +  .++++.++++++.+.+
T Consensus       272 ~~vi~~~SfSK~~~~GlRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~  351 (431)
T PRK15481        272 QRWALIRSVSKALGPDLRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLAR  351 (431)
T ss_pred             CCEEEEeeeccccCCCceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence            333   37799999999999999999998888654343445678899999999997532  1  3567888999999988


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       352 ~L~~  355 (431)
T PRK15481        352 ALQQ  355 (431)
T ss_pred             HHHH
Confidence            8864

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.49  E-value=3.7e-13  Score=116.90  Aligned_cols=149  Identities=15%  Similarity=0.156  Sum_probs=108.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCccccCCCccccccc--CC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN-NGLFISDEVQTGFGRTGDNYWGFEMH--GV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~-~~llI~DEv~~g~gr~G~~~~~~~~~--~~  116 (195)
                      ++.|++.+.     .++.+|++....+.+| ..++.+.+++|.++|++| ++++|+||+|..+.+.+..+.++...  +.
T Consensus       156 ~~~l~~~~~-----~~~~~v~l~~p~NPtG-~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~  229 (402)
T PRK06107        156 PEALEAAIT-----PRTRWLILNAPSNPTG-AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPEL  229 (402)
T ss_pred             HHHHHhhcC-----cCceEEEEECCCCCCC-cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCc
Confidence            466666654     2455666666677888 466788899999999998 99999999999876555312222111  22


Q ss_pred             Ccchh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHH
Q psy13322        117 SPDIV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIG  190 (195)
Q Consensus       117 ~pdi~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~  190 (195)
                      ...++   +|||.++ .|+++||+++++++++.+.......+++.+.+++.++..+|+..+.  ++.++.++++.+.+.+
T Consensus       230 ~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  309 (402)
T PRK06107        230 RDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALA  309 (402)
T ss_pred             cCCEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            23344   5589998 8999999999999999887765555667788999999888863221  4556778888888888


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       310 ~L~~  313 (402)
T PRK06107        310 LLNA  313 (402)
T ss_pred             HHhc
Confidence            8864

>PLN02656 tyrosine transaminase

Probab=99.49  E-value=6.4e-13  Score=115.76  Aligned_cols=148  Identities=17%  Similarity=0.142  Sum_probs=101.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+..    ...+.++.. ..+.+|.+ ++.+.+++|.++|++||++||+||+|.+|.+.+..+.+...++-...
T Consensus       159 ~~~l~~~~~~----~~~~v~l~~-P~NPtG~~-~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  232 (409)
T PLN02656        159 LDAVEALADQ----NTVALVIIN-PGNPCGNV-YSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVP  232 (409)
T ss_pred             HHHHHHHhcc----CceEEEEEC-CCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCc
Confidence            5667666642    234344444 46778864 57888999999999999999999999988665532222221221112


Q ss_pred             ---hhhhccccC-CCCceEEEEec--------HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHH
Q psy13322        120 ---IVTMAKGIA-NGFPMGAVVTT--------TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQV  184 (195)
Q Consensus       120 ---i~~~sK~l~-~G~~~g~v~~~--------~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~  184 (195)
                         +-+|||.++ .|||+||++++        +++++.+..... ...+.+++++.++.++|+...+   ++.++.++++
T Consensus       233 vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  311 (409)
T PLN02656        233 VLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFD-ILGGPATFIQAAVPTILEQTDESFFKKTINILKQS  311 (409)
T ss_pred             EEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHh-hhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence               347799987 89999999984        467777654422 2234578899999999974211   4567788888


Q ss_pred             HHHHHHHhhc
Q psy13322        185 SAQIIGYLRV  194 (195)
Q Consensus       185 ~~~l~~~L~~  194 (195)
                      ++.+.+.|++
T Consensus       312 r~~~~~~L~~  321 (409)
T PLN02656        312 SDICCDRIKE  321 (409)
T ss_pred             HHHHHHHHhh
Confidence            8888888865

>PLN02187 rooty/superroot1

Probab=99.47  E-value=5.9e-13  Score=117.87  Aligned_cols=149  Identities=15%  Similarity=0.157  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p  118 (195)
                      ++.|++++..    ...+.++..| .+.+|. +++.+.+++|.++|++||++||+||+|..+.+.|..+.+...+ +..+
T Consensus       194 ~~~l~~~~~~----~~~~v~i~nP-~NPTG~-v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~  267 (462)
T PLN02187        194 LEGIEAIADE----NTVAMVVINP-NNPCGN-VYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVP  267 (462)
T ss_pred             HHHHHHhcCC----CcEEEEEeCC-CCCCCC-ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCc
Confidence            5667666542    2344555555 577884 6678999999999999999999999999876655322222222 2111


Q ss_pred             c--hhhhccccC-CCCceEEEEec--HHH---HHHhhcccc--ccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHHH
Q psy13322        119 D--IVTMAKGIA-NGFPMGAVVTT--TEI---AQVLTKAAH--FNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQVS  185 (195)
Q Consensus       119 d--i~~~sK~l~-~G~~~g~v~~~--~~i---~~~l~~~~~--~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~~  185 (195)
                      -  +-+|||.++ .|||+||++++  +.+   ++.+.....  ..+.+.+.+++.++.++|+.. .+  +++++.+++++
T Consensus       268 vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r  347 (462)
T PLN02187        268 VLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNV  347 (462)
T ss_pred             EEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            1  237799988 89999999984  222   233333222  222345788999999998642 11  45677888899


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      +++.+.|++
T Consensus       348 ~~l~~~L~~  356 (462)
T PLN02187        348 DLVCDRLKD  356 (462)
T ss_pred             HHHHHHHhh
Confidence            999888875

>PRK06855 aminotransferase; Validated

Probab=99.47  E-value=1.1e-12  Score=115.08  Aligned_cols=150  Identities=14%  Similarity=0.192  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc--C-C
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH--G-V  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~--~-~  116 (195)
                      +++|++.+.+.   .+++++++-..++.+|. +++.+.+++|.++|++||++||.||+|..+.+.+..+.++...  + .
T Consensus       159 ~~~l~~~~~~~---~~~~~i~l~~P~NPTG~-~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~  234 (433)
T PRK06855        159 LDDLENKVKYN---PSIAGILLINPDNPTGA-VYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVP  234 (433)
T ss_pred             HHHHHHHHhcC---CCceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCC
Confidence            57888887643   23444444444778885 7788999999999999999999999999886655322222111  1 0


Q ss_pred             CcchhhhccccC-CCCceEEEEec-----H---HHHHHhhccccccCCCchHHHHHHHHHHHHhh--cc--hhHHHHHHH
Q psy13322        117 SPDIVTMAKGIA-NGFPMGAVVTT-----T---EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--KD--EELQYNCKQ  183 (195)
Q Consensus       117 ~pdi~~~sK~l~-~G~~~g~v~~~-----~---~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~~--~~~~~~l~~  183 (195)
                      .--+-+|||.++ .|||+||++++     +   .+++.+.... ....+.+++++.++.++|+..  ++  +++++.+++
T Consensus       235 ~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~  313 (433)
T PRK06855        235 GIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAK-MIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEK  313 (433)
T ss_pred             eEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhh-ccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Confidence            111347799998 99999999973     2   2333332221 223456788999998888643  11  456778888


Q ss_pred             HHHHHHHHhhc
Q psy13322        184 VSAQIIGYLRV  194 (195)
Q Consensus       184 ~~~~l~~~L~~  194 (195)
                      +.+.+.+.|++
T Consensus       314 r~~~~~~~L~~  324 (433)
T PRK06855        314 RSNIAYEKLKD  324 (433)
T ss_pred             HHHHHHHHHhc
Confidence            88889888864

>PLN02397 aspartate transaminase

Probab=99.47  E-value=8.8e-13  Score=115.51  Aligned_cols=152  Identities=18%  Similarity=0.205  Sum_probs=102.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC--Cccccccc-CC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD--NYWGFEMH-GV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~--~~~~~~~~-~~  116 (195)
                      ++.+++.+.++.  .+..++++-+.++.+|. +++.+.+++|.++|++||+++|+||+|.+|.+.+.  ...+...+ ..
T Consensus       181 ~~~l~~~l~~~~--~~~~~i~~~~P~NPTG~-v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~  257 (423)
T PLN02397        181 FDGLLEDLKAAP--DGSFVLLHACAHNPTGV-DPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVED  257 (423)
T ss_pred             HHHHHHHHHhCC--CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhc
Confidence            566666666542  35667787778888995 55789999999999999999999999999865331  11122111 11


Q ss_pred             Ccchh---hhccccC-CCCceEEEE--e-cHHHHHHhh----ccccccCCCchHHHHHHHHHHHHhhc--------chhH
Q psy13322        117 SPDIV---TMAKGIA-NGFPMGAVV--T-TTEIAQVLT----KAAHFNTFGGNPVGCVIASTVLDVIK--------DEEL  177 (195)
Q Consensus       117 ~pdi~---~~sK~l~-~G~~~g~v~--~-~~~i~~~l~----~~~~~~t~~~~p~~~~aa~aal~~~~--------~~~~  177 (195)
                      .++++   +|||+++ .|||+||++  + ++++++.+.    .......++.+.+++.++.++|+.-.        -+++
T Consensus       258 ~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~  337 (423)
T PLN02397        258 GHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGM  337 (423)
T ss_pred             CCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            12233   6799999 899999984  4 555544332    22222333456778888877775421        1356


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      ++.++++++.+.+.|++
T Consensus       338 ~~~~~~rr~~l~~~L~~  354 (423)
T PLN02397        338 ADRIISMRQKLYDALEA  354 (423)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            77899999999999875

>PRK07337 aminotransferase; Validated

Probab=99.47  E-value=7.2e-13  Score=114.38  Aligned_cols=146  Identities=16%  Similarity=0.196  Sum_probs=105.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     +++.+|++....+.+|. ..+.+.+++|.++|++|++++|+||+|.++.+.+. ..+..  ...++
T Consensus       153 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~--~~~~~  223 (388)
T PRK07337        153 AADVEAAWG-----ERTRGVLLASPSNPTGT-SIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSAL--SLGDD  223 (388)
T ss_pred             HHHHHhhcC-----ccceEEEEECCCCCCCc-CcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChh--hccCC
Confidence            466666554     24456666556777884 55788899999999999999999999998866543 22221  23345


Q ss_pred             hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--c-chhHHHHHHHHHHHHHHHh
Q psy13322        120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--K-DEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~-~~~~~~~l~~~~~~l~~~L  192 (195)
                      ++   ++||.++ .|+++||+++++++++.+.........+.+++++.++.++++.-  . -.+.++.++++++++.+.|
T Consensus       224 vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L  303 (388)
T PRK07337        224 VITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPAL  303 (388)
T ss_pred             EEEEEechhhcCCchhheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence            43   6689998 89999999999998888776543444456788888888887531  1 1445677888888888888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       304 ~~  305 (388)
T PRK07337        304 ES  305 (388)
T ss_pred             Hh
Confidence            64

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.47  E-value=1.2e-12  Score=114.99  Aligned_cols=148  Identities=12%  Similarity=0.088  Sum_probs=98.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++++..    ...+.+++.| .+.+|. +++.+.+++|.++|++||+++|+||+|..|.+.+..+.+...++-...
T Consensus       180 ~~~l~~~~~~----~~~~i~i~~P-~NPtG~-v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~  253 (430)
T PLN00145        180 LEGVEALADE----NTVAMVIINP-NNPCGS-VYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAP  253 (430)
T ss_pred             HHHHHHHhCc----CceEEEEeCC-CCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCc
Confidence            5677776652    2344455555 677885 667888999999999999999999999987654432222222221222


Q ss_pred             h---hhhccccC-CCCceEEEEe--cHHHHH------HhhccccccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHH
Q psy13322        120 I---VTMAKGIA-NGFPMGAVVT--TTEIAQ------VLTKAAHFNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQV  184 (195)
Q Consensus       120 i---~~~sK~l~-~G~~~g~v~~--~~~i~~------~l~~~~~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~  184 (195)
                      +   -+|||.++ .|||+||+++  ++.+++      .+... ...+.+.+.+.+.|+..+|+.- ++  ++.++.++++
T Consensus       254 vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~  332 (430)
T PLN00145        254 VLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNY-LNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKET  332 (430)
T ss_pred             EEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHH-hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            3   36789987 8999999997  344432      22222 2222345778888888888742 11  4567788888


Q ss_pred             HHHHHHHhhc
Q psy13322        185 SAQIIGYLRV  194 (195)
Q Consensus       185 ~~~l~~~L~~  194 (195)
                      ++.+.+.|++
T Consensus       333 ~~~~~~~L~~  342 (430)
T PLN00145        333 ADICYEKIKE  342 (430)
T ss_pred             HHHHHHHHhc
Confidence            9888888865

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.46  E-value=6e-13  Score=114.42  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=95.4

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G  130 (195)
                      ++++|++-...+.+|. +.+.+.+.++.++|+ ++++||+||+|..+++.|. ...+.  ...++   +-+|||++| +|
T Consensus       155 ~~~~i~l~~P~NPtG~-~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~-~~~~~--~~~~~~i~~~SfSK~~g~~G  229 (369)
T PRK08153        155 NAPLVYLANPDNPMGS-WHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA-APPID--TDDPNVIRMRTFSKAYGLAG  229 (369)
T ss_pred             CCcEEEEeCCCCCCCC-CCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc-chhhh--hcCCCEEEEecchHhccCcc
Confidence            4555655444666786 556777888888876 4999999999998876553 22221  12344   338899999 99


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +|+||+++++++++.+....  .+++.+++++.++.++|+.-+ .+.+++.++++++++.+.|++
T Consensus       230 lRiG~~v~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~  292 (369)
T PRK08153        230 ARVGYAIGAPGTIKAFDKVR--NHFGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARA  292 (369)
T ss_pred             hheeeeecCHHHHHHHHHhh--cCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998887543  346778999999999996321 135567777888888777764

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.46  E-value=7.2e-13  Score=112.24  Aligned_cols=143  Identities=16%  Similarity=0.183  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.      +..+|++....+.+|. +++.+.+++|.++|++||+++|+||+|.++..... ..  ...+..++
T Consensus       116 ~~~l~~~~~------~~~~v~i~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~--~~~~~~~~  185 (330)
T TIGR01140       116 LDRLPAALE------ELDVLVLCNPNNPTGR-LIPPETLLALAARLRARGGWLVVDEAFIDFTPDAS-LA--PQAARFPG  185 (330)
T ss_pred             HHHHHhhcc------cCCEEEEeCCCCCCCC-CCCHHHHHHHHHHhHhcCCEEEEECcccccCCccc-hh--hHhccCCC
Confidence            566666553      2225555555778886 55789999999999999999999999987753211 11  11122233


Q ss_pred             hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++   ++||.+| .|+++||+++++++++.+....  ..++.++++++++.+.++..+ .++.+++++++.+++++.|++
T Consensus       186 ~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  263 (330)
T TIGR01140       186 LVVLRSLTKFFGLAGLRLGFVVAHPALLARLREAL--GPWTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLAR  263 (330)
T ss_pred             EEEEEecchhhcCchhhhhheeCCHHHHHHHHhcC--CCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33   7799999 8999999999999988887643  245567788888888887422 145678888999999888865

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.46  E-value=1.4e-12  Score=113.13  Aligned_cols=146  Identities=18%  Similarity=0.192  Sum_probs=101.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+..     +.++|++....+.+|. ..+.+.+++|.++|++||+++|+||+|..|.+.|..+.++.  .+.++
T Consensus       158 ~~~l~~~~~~-----~~~~v~~~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~  229 (401)
T TIGR01264       158 LKQLESLIDE-----KTAALIVNNPSNPCGS-VFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLA--SLSST  229 (401)
T ss_pred             HHHHHHHhcc-----CceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHH--HcCCC
Confidence            5666666542     3456677666778896 56788899999999999999999999998866553222221  12222


Q ss_pred             -----hhhhccccC-CCCceEEEEecH------HHHHHhhccccccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHH
Q psy13322        120 -----IVTMAKGIA-NGFPMGAVVTTT------EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQV  184 (195)
Q Consensus       120 -----i~~~sK~l~-~G~~~g~v~~~~------~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~  184 (195)
                           +-+|||+++ .|+|+||+++++      ++++.+..... ..++.+++++.++.++|+.. ++  ++.++.++++
T Consensus       230 ~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~  308 (401)
T TIGR01264       230 VPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESN  308 (401)
T ss_pred             CcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence                 337799988 899999999874      34444433221 23456788888888888642 11  4567788888


Q ss_pred             HHHHHHHhhc
Q psy13322        185 SAQIIGYLRV  194 (195)
Q Consensus       185 ~~~l~~~L~~  194 (195)
                      ++++.+.|++
T Consensus       309 r~~l~~~L~~  318 (401)
T TIGR01264       309 AMLCYGALAA  318 (401)
T ss_pred             HHHHHHHHHh
Confidence            8889888865

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.46  E-value=1e-12  Score=113.65  Aligned_cols=149  Identities=13%  Similarity=0.084  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-Ccccc-cc---c
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-NYWGF-EM---H  114 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~-~~---~  114 (195)
                      .+.|++.+.+     ++++|++...++.+|. +++.+.+++|.++|++|+++||+||+|..+.+.+. ...+. ..   .
T Consensus       155 ~~~l~~~~~~-----~~k~i~l~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~  228 (393)
T TIGR03538       155 FDAVPESVWR-----RCQLLFVCSPGNPTGA-VLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQL  228 (393)
T ss_pred             HHHHHHHHhh-----cceEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccc
Confidence            4566665542     4556666666888896 56789999999999999999999999997754431 11111 11   1


Q ss_pred             CC--Ccch---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHH
Q psy13322        115 GV--SPDI---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQ  187 (195)
Q Consensus       115 ~~--~pdi---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~  187 (195)
                      +.  .+.+   -+|||.++ .|+++||+++++++++.+.......+++.+++.+.++.+++..-+ -...++.++++.+.
T Consensus       229 ~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  308 (393)
T TIGR03538       229 GRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAA  308 (393)
T ss_pred             cccccccEEEEecchhhcCCcccceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            11  1233   37799987 899999999999988887655433455667888888888875311 13456677888888


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      +.+.|++
T Consensus       309 ~~~~L~~  315 (393)
T TIGR03538       309 VLEILGQ  315 (393)
T ss_pred             HHHHHHh
Confidence            8887754

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.46  E-value=7.6e-13  Score=115.07  Aligned_cols=152  Identities=14%  Similarity=0.203  Sum_probs=103.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC--Cccccccc-CC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD--NYWGFEMH-GV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~--~~~~~~~~-~~  116 (195)
                      ++.+++.+++..  .+..++++-..++.+|. +++.+.+++|.++|++||++||+||+|.+|.+.+.  ...+...+ ..
T Consensus       163 ~~~l~~~~~~~~--~~~~~~~~~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~  239 (404)
T PTZ00376        163 FDGMLEDLRTAP--NGSVVLLHACAHNPTGV-DPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAER  239 (404)
T ss_pred             HHHHHHHHHhCC--CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhc
Confidence            577888776542  23456777888889995 55889999999999999999999999998865331  01111111 11


Q ss_pred             Ccc---hhhhccccC-CCCceEEE---EecHHHHHHhhccc---cccCC-CchHHHHHHHHHHHHhhc--------chhH
Q psy13322        117 SPD---IVTMAKGIA-NGFPMGAV---VTTTEIAQVLTKAA---HFNTF-GGNPVGCVIASTVLDVIK--------DEEL  177 (195)
Q Consensus       117 ~pd---i~~~sK~l~-~G~~~g~v---~~~~~i~~~l~~~~---~~~t~-~~~p~~~~aa~aal~~~~--------~~~~  177 (195)
                      .++   +.+|||.++ .|||+||+   ++++++++.+....   ..+++ +.+++++.++.++|+..+        -.+.
T Consensus       240 ~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  319 (404)
T PTZ00376        240 GVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEM  319 (404)
T ss_pred             CCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            223   337799999 99999998   56777555443211   22233 346788888888886421        1244


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      +++++++++.+.+.|++
T Consensus       320 ~~~~~~~r~~l~~~L~~  336 (404)
T PTZ00376        320 SGRIQNMRQLLYDELKA  336 (404)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            56788899999888865

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.46  E-value=7.3e-13  Score=113.32  Aligned_cols=146  Identities=18%  Similarity=0.198  Sum_probs=100.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+.     +++++|++....+++|.+.+ .+.+.++.+.|+ +|+++|+||+|..+.+.+....+....+..++
T Consensus       144 ~~~l~~~~~-----~~~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  216 (367)
T PRK02731        144 LDAMLAAVT-----PRTRLVFIANPNNPTGTYLP-AEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPN  216 (367)
T ss_pred             HHHHHHHhC-----CCCcEEEEeCCCCCCCcCCC-HHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCC
Confidence            566777664     24557777888889997664 455555555553 59999999999877554421222222233345


Q ss_pred             hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++   +|||.+| .|+++||+++++++++.+....  .+++.+++++.++.++|+... -++..+.++++.+++.+.|++
T Consensus       217 ~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  294 (367)
T PRK02731        217 VVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVR--QPFNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAE  294 (367)
T ss_pred             EEEEeeehHhhcCcccceeeeeCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44   7799998 8999999999999988887543  245567888888888886422 145667777788888887764

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.44  E-value=6.1e-13  Score=113.56  Aligned_cols=146  Identities=14%  Similarity=0.089  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     .++++|++...++.+|.+.+ .+.+.++.+.|+ +|+++|+||+|..|-..+.........+..+.
T Consensus       141 ~~~l~~~~~-----~~~~~v~i~~p~NPtG~~~~-~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  213 (359)
T PRK03158        141 LEAMLKAID-----EQTKIVWICNPNNPTGTYVN-HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYEN  213 (359)
T ss_pred             HHHHHHhcC-----CCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCC
Confidence            456665553     24557777788999998664 455666665553 69999999999876443321111111111122


Q ss_pred             ---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        120 ---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 ---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                         +.+|||++| .|+|+||+++++++++.+....  .+++.|++++.++.++|+..+ .+...+.++++++++.+.|++
T Consensus       214 vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  291 (359)
T PRK03158        214 LIVLRTFSKAYGLAALRVGYGIASEELIEKLNIAR--PPFNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKE  291 (359)
T ss_pred             EEEEEechHhhcCcchhhehhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               237899999 8999999999999988886643  246778999999999986422 134555667777777777654

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.44  E-value=2.3e-12  Score=112.29  Aligned_cols=148  Identities=15%  Similarity=0.120  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++++..    ...+.+++.| .+.+|. +++.+.+++|.++|++|+++||+||+|..|.+.+..+.+...+.-.+.
T Consensus       160 ~~~l~~~~~~----~~~~~~~~nP-~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~  233 (409)
T PLN00143        160 LDAVEAIADE----NTIAMVIINP-GNPCGS-VYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVP  233 (409)
T ss_pred             HHHHHHhccc----CCEEEEEECC-CCCCCC-ccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCc
Confidence            5677766542    2444555655 678885 557888999999999999999999999988665532212222221222


Q ss_pred             ---hhhhccccC-CCCceEEEEec--HHHH------HHhhccccccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHH
Q psy13322        120 ---IVTMAKGIA-NGFPMGAVVTT--TEIA------QVLTKAAHFNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQV  184 (195)
Q Consensus       120 ---i~~~sK~l~-~G~~~g~v~~~--~~i~------~~l~~~~~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~  184 (195)
                         +-+|||.++ .|||+||++++  +.+.      +.+........+ .+++++.++.++|+.. ..  ++.+++++++
T Consensus       234 vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  312 (409)
T PLN00143        234 VITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPEILEKTTEDFFSKTINILRAA  312 (409)
T ss_pred             EEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence               337799987 89999999983  3332      223222222222 4678888888888632 11  4566778888


Q ss_pred             HHHHHHHhhc
Q psy13322        185 SAQIIGYLRV  194 (195)
Q Consensus       185 ~~~l~~~L~~  194 (195)
                      .+++.+.|++
T Consensus       313 ~~~~~~~L~~  322 (409)
T PLN00143        313 LAFCYDKLKE  322 (409)
T ss_pred             HHHHHHHHhc
Confidence            8888777754

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.44  E-value=2.8e-12  Score=111.80  Aligned_cols=148  Identities=15%  Similarity=0.184  Sum_probs=102.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC-CCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG-VSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~-~~p  118 (195)
                      ++.|++.+..     ++.+|++....+.+|. +.+.+.+++|.++|++||++||+||+|..|.+.+..+.+...+. ..+
T Consensus       167 ~~~l~~~~~~-----~~~~i~~~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  240 (412)
T PTZ00433        167 LDEIRRLVDD-----RTKALIMTNPSNPCGS-NFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVP  240 (412)
T ss_pred             HHHHHHHhcc-----CceEEEEeCCCCCCCc-ccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCc
Confidence            4666665542     4556777666778894 55788899999999999999999999998865543122222221 111


Q ss_pred             c--hhhhccccC-CCCceEEEEe------cHHHHHHhhccccccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHHHH
Q psy13322        119 D--IVTMAKGIA-NGFPMGAVVT------TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQVSA  186 (195)
Q Consensus       119 d--i~~~sK~l~-~G~~~g~v~~------~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~~~  186 (195)
                      -  +-+|||.++ .|+|+||+++      .+++++.+.... ..+++.+++++.++.++|+.. +.  ++.++.++++++
T Consensus       241 ~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~  319 (412)
T PTZ00433        241 RVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAM  319 (412)
T ss_pred             eEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            2  237799997 8999999997      245666665432 233567888998888888642 11  456778888889


Q ss_pred             HHHHHhhc
Q psy13322        187 QIIGYLRV  194 (195)
Q Consensus       187 ~l~~~L~~  194 (195)
                      .+.+.|++
T Consensus       320 ~l~~~L~~  327 (412)
T PTZ00433        320 VLYNHIGE  327 (412)
T ss_pred             HHHHHHhc
Confidence            89888864

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.44  E-value=2.7e-12  Score=108.83  Aligned_cols=129  Identities=13%  Similarity=0.142  Sum_probs=95.7

Q ss_pred             EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CCCce
Q psy13322         58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NGFPM  133 (195)
Q Consensus        58 avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G~~~  133 (195)
                      .+++.| .+.+|. ..+.+.+++|.++|+++|++||+||+|..+.. ..   +.....-.++   +-+|||++| .|+|+
T Consensus       128 v~l~nP-~NPTG~-~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~-~~---s~~~~~~~~~vi~~~SfSK~~gl~GlRi  201 (330)
T PRK05664        128 LVVVNP-NNPTGR-RFDPARLLAWHARLAARGGWLVVDEAFMDNTP-QH---SLAACAHRPGLIVLRSFGKFFGLAGARL  201 (330)
T ss_pred             EEEeCC-cCCCCC-ccCHHHHHHHHHHHHhcCCEEEEECCcccCCC-cc---cccccccCCCEEEEeeccccccCCCcce
Confidence            466666 578896 55778899999999999999999999986632 11   1222211233   337899999 99999


Q ss_pred             EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ||+++++++++.+.....  +++.+++++.++.++|+... .+.+++.++++++++.+.|++
T Consensus       202 G~~v~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~  261 (330)
T PRK05664        202 GFVLAEPALLRALAELLG--PWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRR  261 (330)
T ss_pred             EEEEeCHHHHHHHHHhcC--CCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888876532  34556788888888887532 246778899999999998875

>PLN02231 alanine transaminase

Probab=99.44  E-value=2.3e-12  Score=115.90  Aligned_cols=154  Identities=17%  Similarity=0.195  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc-CCCccccccc---
Q psy13322         40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT-GDNYWGFEMH---  114 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~-G~~~~~~~~~---  114 (195)
                      +++|++.+++...++ +++++++-...+.+|. +++.+.+++|.++|++||++||+||+|..+.+. +..+.++...   
T Consensus       255 ~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~-vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~  333 (534)
T PLN02231        255 ISELKKQLEDARSKGITVRALVVINPGNPTGQ-VLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARS  333 (534)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhh
Confidence            678888887542211 5666555444778895 678899999999999999999999999988664 3323233211   


Q ss_pred             -CC---Ccchh---hhcccc-C-CCCceEEEEe---cHHHHHHhhccccccCCCchHHHHHHHHHHHHh-------h---
Q psy13322        115 -GV---SPDIV---TMAKGI-A-NGFPMGAVVT---TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV-------I---  172 (195)
Q Consensus       115 -~~---~pdi~---~~sK~l-~-~G~~~g~v~~---~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~-------~---  172 (195)
                       +.   ...++   +|||++ + .|||+||+++   ++++++.+..... .+.+.+.++++++..+++-       .   
T Consensus       334 ~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~  412 (534)
T PLN02231        334 MGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESY  412 (534)
T ss_pred             hccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHH
Confidence             21   11233   679987 5 7999999986   5788887765432 3456677888888777742       1   


Q ss_pred             -c-chhHHHHHHHHHHHHHHHhhcC
Q psy13322        173 -K-DEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       173 -~-~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                       + .+++++.++++.+.+.+.|+++
T Consensus       413 ~~~~~~i~~~~~~r~~~l~~~L~~~  437 (534)
T PLN02231        413 MAEKDGILSSLARRAKTLEDALNSL  437 (534)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             1 1345778999999999988753

>PRK03321 putative aminotransferase; Provisional

Probab=99.44  E-value=4.9e-13  Score=113.84  Aligned_cols=146  Identities=19%  Similarity=0.208  Sum_probs=97.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     +++++|++....+.+|.+.+ .+.+.++.+.| ++++++|+||+|.+|.+.+....+.......++
T Consensus       135 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~~~~-~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  207 (352)
T PRK03321        135 LDAMAAAIT-----DRTRLIFVCNPNNPTGTVVT-PAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPN  207 (352)
T ss_pred             HHHHHHhhc-----cCCCEEEEeCCCCCcCCCcC-HHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCC
Confidence            566777664     24456777777888997765 44444444433 369999999999987654431112222222345


Q ss_pred             hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++   +|||.+| .|+|+||+++++++++.+...  ...++.+++++.++.++|+..+. .+..+.+.++++.+.+.|++
T Consensus       208 vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~  285 (352)
T PRK03321        208 VVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKV--AVPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRA  285 (352)
T ss_pred             EEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44   6799999 899999999999999988764  24567788999988888864322 23344455556677777753

>PRK08363 alanine aminotransferase; Validated

Probab=99.43  E-value=2.1e-12  Score=111.98  Aligned_cols=148  Identities=14%  Similarity=0.075  Sum_probs=101.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     .++.+|++....+.+|.. .+.+.+++|.++|++||+++|+||+|..+.+.+. ..+.....-...
T Consensus       156 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~~~~~~~~~~  228 (398)
T PRK08363        156 IDDIRKKIT-----EKTKAIAVINPNNPTGAL-YEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLTKDVP  228 (398)
T ss_pred             HHHHHhhCC-----cceEEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccCHHHcCcCCc
Confidence            456666554     244566665667778864 4678899999999999999999999998755443 222222211222


Q ss_pred             h---hhhccccC-CCCceEEEEe--cHHHHHHhhccc---cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322        120 I---VTMAKGIA-NGFPMGAVVT--TTEIAQVLTKAA---HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI  188 (195)
Q Consensus       120 i---~~~sK~l~-~G~~~g~v~~--~~~i~~~l~~~~---~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l  188 (195)
                      +   -+|||.++ .|+++||+++  ++++++.+....   ...+++.+++++.++.++|+...+  .+++++++++++++
T Consensus       229 vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l  308 (398)
T PRK08363        229 VIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYI  308 (398)
T ss_pred             EEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            3   37899987 8999999997  666555544321   122356788888888888864322  45678888899999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|++
T Consensus       309 ~~~L~~  314 (398)
T PRK08363        309 YKRLNE  314 (398)
T ss_pred             HHHHhc
Confidence            888864

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.41  E-value=3.5e-12  Score=111.00  Aligned_cols=139  Identities=15%  Similarity=0.049  Sum_probs=96.0

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCcc---hhhhccccC-C
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSPD---IVTMAKGIA-N  129 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~pd---i~~~sK~l~-~  129 (195)
                      ++++|++-..++.+|. +++.+.+++|.++|++||++||.||+|..|-+.+....++... +....   +-+|||+++ .
T Consensus       176 ~~k~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~p  254 (409)
T PRK07590        176 KVDIIYLCFPNNPTGT-VLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFT  254 (409)
T ss_pred             CceEEEEeCCCCCcCC-cCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCc
Confidence            4556666556778885 6678999999999999999999999999875444211122211 11112   337899998 9


Q ss_pred             CCceEEEEecHHHHHHh-----------hccccccCC-CchHHHHHHHHHHHHh-hcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322        130 GFPMGAVVTTTEIAQVL-----------TKAAHFNTF-GGNPVGCVIASTVLDV-IKD--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       130 G~~~g~v~~~~~i~~~l-----------~~~~~~~t~-~~~p~~~~aa~aal~~-~~~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+|+||+++++++++.+           .......++ +.+.+++.++.++|+. ..+  +++++.++++++++.+.|++
T Consensus       255 GlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~  334 (409)
T PRK07590        255 GTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLES  334 (409)
T ss_pred             CceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999887622           111122222 4577888888888863 211  45677888899999888864

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.41  E-value=2.8e-12  Score=109.63  Aligned_cols=135  Identities=16%  Similarity=0.126  Sum_probs=97.2

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G  130 (195)
                      ++++|++....+.+|. .++.+.+++|.++|++|+++||+||+|.+|...+..+...  ..-.+.   +.+|||.++ .|
T Consensus       142 ~~k~v~l~~p~NPTG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~~~G  218 (356)
T PRK08056        142 DLDCLFLCTPNNPTGL-LPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ--LADNPHLWVLRSLTKFYAIPG  218 (356)
T ss_pred             CCCEEEEeCCcCCCCC-CCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH--hccCCCEEEEEechhhccCcc
Confidence            5557777777888997 6788999999999999999999999999885444211111  111123   236789999 99


Q ss_pred             CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +|+||++++ +++++.+...  ...++.+++++.++.++++.-. ..++++.++++++++.+.|++
T Consensus       219 ~RiG~~v~~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  282 (356)
T PRK08056        219 LRLGYLVNSDDAAVARMRRQ--QMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCA  282 (356)
T ss_pred             hhheeeecCCHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999984 5677777643  2345567788888888875211 145567788999999888865

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.41  E-value=2e-12  Score=109.73  Aligned_cols=143  Identities=17%  Similarity=0.190  Sum_probs=99.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     .++++|++....+.+|...+ .+.+.++.+.|+ +++++|+||+|.++...+. ..  ......++
T Consensus       132 ~~~l~~~~~-----~~~~~v~l~~p~NptG~~~~-~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~-~~--~~~~~~~~  201 (346)
T TIGR01141       132 LEDILVAID-----DKPKLVFLCSPNNPTGNLLS-RSDIEAVLERTP-EDALVVVDEAYGEFSGEPS-TL--PLLAEYPN  201 (346)
T ss_pred             HHHHHHhcC-----CCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchhhhcCCcc-HH--HHHhhCCC
Confidence            566666542     35667888877888997665 444444444444 4999999999997753322 21  11122234


Q ss_pred             hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++   ++||.++ +|+++|++++++++.+.+....  .+++.+++++.++.++++... -.+.+++++++.+++++.|++
T Consensus       202 ~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  279 (346)
T TIGR01141       202 LIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVR--APFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKK  279 (346)
T ss_pred             EEEEehhhHhhhchhhhceeeecCHHHHHHHHhcc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33   7789997 7999999999999988887542  345668889998888887643 245678888888889888864

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.40  E-value=6.4e-12  Score=108.07  Aligned_cols=146  Identities=10%  Similarity=0.057  Sum_probs=96.0

Q ss_pred             HHHHHHHHHhcCC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVP--ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~--~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      +++|++.+++...  ..+..+|+++.+.++.|...+    +++|.++|++||+++|+||+|+ +|..+..   ..  ...
T Consensus       129 ~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea~~-~g~~~~~---~~--~~~  198 (370)
T TIGR02539       129 PEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCAYT-VGRMPVS---AK--EIG  198 (370)
T ss_pred             HHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECccc-cCCcCCC---HH--HcC
Confidence            6788888764211  025668888888899998777    9999999999999999999998 4433321   11  123


Q ss_pred             cch--hhhccccCCCCceEEEEecHHHHHHhhccccccCC--------CchHHHHHHHHHHHHhhcc-hhHHHHHHHHHH
Q psy13322        118 PDI--VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTF--------GGNPVGCVIASTVLDVIKD-EELQYNCKQVSA  186 (195)
Q Consensus       118 pdi--~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~--------~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~  186 (195)
                      +|+  .+++|++++|.++|++++++++++.+.+......+        ...+.+++++.++++...+ -+...+..++.+
T Consensus       199 ~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~  278 (370)
T TIGR02539       199 ADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTR  278 (370)
T ss_pred             CCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            454  47789999666799999999999988765422111        1112355666667764322 122233344456


Q ss_pred             HHHHHhhcC
Q psy13322        187 QIIGYLRVV  195 (195)
Q Consensus       187 ~l~~~L~~l  195 (195)
                      +|++.|+++
T Consensus       279 ~l~~~L~~~  287 (370)
T TIGR02539       279 WFVAELEDI  287 (370)
T ss_pred             HHHHHHHhC
Confidence            888888753

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.40  E-value=4.7e-12  Score=113.52  Aligned_cols=146  Identities=14%  Similarity=0.218  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|++....+.+|.+ ++.+.+++|.++|++||++||+||+|..|.+.|..+.+...  +.++
T Consensus       271 ~~~l~~~~~-----~~~k~i~i~nP~NPTG~v-~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~--~~~~  342 (517)
T PRK13355        271 IDDIRSKIT-----SRTKAIVIINPNNPTGAL-YPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS--LAPD  342 (517)
T ss_pred             HHHHHHhcC-----cCceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHH--hCCC
Confidence            567776664     245556555557788965 57899999999999999999999999988665532223222  2344


Q ss_pred             h-----hhhccccC-CCCceEEEEec--HHH----HHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhH---HHHHHH
Q psy13322        120 I-----VTMAKGIA-NGFPMGAVVTT--TEI----AQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EEL---QYNCKQ  183 (195)
Q Consensus       120 i-----~~~sK~l~-~G~~~g~v~~~--~~i----~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~---~~~l~~  183 (195)
                      +     -+|||.++ +|||+||++++  +++    ++.+... ....++.|.+++.++.++|+.... ++.   ..++.+
T Consensus       343 ~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~  421 (517)
T PRK13355        343 LFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYE  421 (517)
T ss_pred             CeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            2     25799998 89999999954  443    3333222 223345678888888888863211 111   234556


Q ss_pred             HHHHHHHHhhc
Q psy13322        184 VSAQIIGYLRV  194 (195)
Q Consensus       184 ~~~~l~~~L~~  194 (195)
                      +++++.+.|++
T Consensus       422 ~r~~l~~~L~~  432 (517)
T PRK13355        422 QRELVYNALNA  432 (517)
T ss_pred             HHHHHHHHHhc
Confidence            67888888865

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.40  E-value=5.6e-12  Score=107.81  Aligned_cols=134  Identities=14%  Similarity=0.150  Sum_probs=96.5

Q ss_pred             eEEE-EEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcchh---hhccccC-C
Q psy13322         56 AAAL-IAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIV---TMAKGIA-N  129 (195)
Q Consensus        56 ~aav-ivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi~---~~sK~l~-~  129 (195)
                      +++| +..| .+.+|. .++.+.+++|.++|++|++++|+||+|..|...+. ..+. ......+.++   +|||.++ .
T Consensus       142 ~~~v~~~~P-~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~gl~  218 (354)
T PRK06358        142 IDLVFLCNP-NNPTGQ-LISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENE-TISMINYLENFKNLIIIRAFTKFFAIP  218 (354)
T ss_pred             CCEEEEeCC-CCCCCC-ccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCcc-chhHHHhccCCCCEEEEEechhhccCc
Confidence            3444 4455 778886 56789999999999999999999999998865443 2121 2222223333   7799999 9


Q ss_pred             CCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        130 GFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       130 G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+|+||++++ +.+++.+.....  .++.+.+++.++.++|+.-+- ++.++.++++++++.+.|++
T Consensus       219 G~RiG~lv~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  283 (354)
T PRK06358        219 GLRLGYGLTSNKNLAEKLLQMRE--PWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSE  283 (354)
T ss_pred             chhheeeecCCHHHHHHHHHhCC--CCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999985 677777765432  456688888888888853221 45667788888889888865

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.40  E-value=3.6e-12  Score=110.47  Aligned_cols=153  Identities=17%  Similarity=0.278  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc-CCCccccccc-CC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT-GDNYWGFEMH-GV  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~-G~~~~~~~~~-~~  116 (195)
                      +++.|++.+.+..  .+..++++-..++.+|. +++.+.+++|.++|++||+++|+||+|.+|... +....+...+ +.
T Consensus       158 d~~~l~~~~~~~~--~~~~~~i~~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~  234 (396)
T PRK09257        158 DFDAMLADLSQAP--AGDVVLLHGCCHNPTGA-DLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAA  234 (396)
T ss_pred             CHHHHHHHHHhCC--CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhc
Confidence            3677888777543  23456666778888996 668899999999999999999999999988643 1111121111 22


Q ss_pred             Ccch---hhhccccC-CCCceEEEEe---cHH----HHHHhhccccccCCCchHHHHHHHHHHHHhh------cc--hhH
Q psy13322        117 SPDI---VTMAKGIA-NGFPMGAVVT---TTE----IAQVLTKAAHFNTFGGNPVGCVIASTVLDVI------KD--EEL  177 (195)
Q Consensus       117 ~pdi---~~~sK~l~-~G~~~g~v~~---~~~----i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~------~~--~~~  177 (195)
                      .+++   -+|||.++ .|||+||+++   +++    ++..+.........+.+++++.++.+.|+..      .+  +++
T Consensus       235 ~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  314 (396)
T PRK09257        235 GLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEM  314 (396)
T ss_pred             CCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            2333   37799999 6999999973   333    3333322222233344777777777777532      11  356


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      +++++++++.+.+.|++
T Consensus       315 r~~~~~rr~~l~~~L~~  331 (396)
T PRK09257        315 RERIKAMRQLLVEALKA  331 (396)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            78888999999888865

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.39  E-value=1.9e-12  Score=110.37  Aligned_cols=141  Identities=13%  Similarity=0.069  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~p  118 (195)
                      ++.|++.+.     .++++|++..+.+++|.+.+    .+++.++|+++|+++|+||+|.+|.  +...... ...+-.-
T Consensus       148 ~~~l~~~~~-----~~~~~v~~~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~--~~~~~~~~~~~~~vi  216 (361)
T PRK00950        148 VDSVLNAIT-----EKTKVIFLCTPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA--EYDYTPLALEYDNLI  216 (361)
T ss_pred             HHHHHHHhc-----cCCCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC--ccchHHHHHhcCCEE
Confidence            566666654     24456666677889998876    6678888999999999999998774  2212111 1111111


Q ss_pred             chhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhh
Q psy13322        119 DIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       119 di~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~  193 (195)
                      -+.+|||++| .|+|+||+++++++++.+....  ..++.++++++++.++++..+ -++..+++++++++|.+.|+
T Consensus       217 ~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~  291 (361)
T PRK00950        217 IGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAK--TPFSLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP  291 (361)
T ss_pred             EEEeehHhhcCchhhcchhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC
Confidence            1337899999 8999999999999988776543  234467788888888886422 13455667777777776653

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.39  E-value=8.1e-12  Score=108.55  Aligned_cols=148  Identities=13%  Similarity=0.102  Sum_probs=99.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+..     +.++|++....+..|. +.+.+.+++|.++|+++|+++|+||+|..|.+.+..+.....+.-.++
T Consensus       159 ~~~l~~~~~~-----~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  232 (403)
T TIGR01265       159 LDGLEALADE-----KTVAIVVINPSNPCGS-VFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVP  232 (403)
T ss_pred             HHHHHHHhCc-----CccEEEEecCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCc
Confidence            5677666542     3445666555677885 667788999999999999999999999988665532222222211122


Q ss_pred             h---hhhccccC-CCCceEEEEec--HH-----HHHHhhccccccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHHH
Q psy13322        120 I---VTMAKGIA-NGFPMGAVVTT--TE-----IAQVLTKAAHFNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQVS  185 (195)
Q Consensus       120 i---~~~sK~l~-~G~~~g~v~~~--~~-----i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~~  185 (195)
                      +   -+|||.++ .|+++||++++  ++     +.+.+.... ..+++.+++++.++.++|+.. +.  ++.++.+++++
T Consensus       233 vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  311 (403)
T TIGR01265       233 VLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLL-QRILGPATIVQGALPDILENTPQEFFDGKISVLKSNA  311 (403)
T ss_pred             EEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHh-hhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            3   37799987 89999999984  22     333333221 124566888888888888642 11  45677788888


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      +++.+.|+.
T Consensus       312 ~~l~~~L~~  320 (403)
T TIGR01265       312 ELCYEELKD  320 (403)
T ss_pred             HHHHHHHhc
Confidence            888888864

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.39  E-value=4.5e-12  Score=107.47  Aligned_cols=134  Identities=12%  Similarity=0.051  Sum_probs=90.6

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcch---hhhccccC-C
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDI---VTMAKGIA-N  129 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi---~~~sK~l~-~  129 (195)
                      ++++|++-..++.+|. +.+.+.+++|.++|++||++||+||++..|...+. . +. ...+-.+.+   -+|||+++ .
T Consensus       122 ~~k~v~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~-~-~~~~~~~~~~~vi~~~SfSK~~~l~  198 (332)
T PRK06425        122 NFDLIFIVSPDNPLGN-LISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA-E-EDVLLNRSYGNVIIGRSLTKILGIP  198 (332)
T ss_pred             CCCEEEEeCCCCCcCC-ccCHHHHHHHHHHHHHcCCEEEEecchhccccccc-h-hHHHHhccCCCEEEEeecHHhcCCc
Confidence            3345665567888996 56788899999999999999999999998854332 1 11 111222333   37899999 9


Q ss_pred             CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        130 GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       130 G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+|+||+++++++++.+......  +..+..++.+ +...+.-. .+++++.++++++++.+.|++
T Consensus       199 GlRiGy~v~~~~li~~l~~~~~~--~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  261 (332)
T PRK06425        199 SLRIGYIATDDYNMKISRKITEP--WSVCDPAIDF-IRSIDLDYVAKHSLDIMENERSYLINNLEA  261 (332)
T ss_pred             hhhheeeecCHHHHHHHHHcCCC--CccCHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888764322  2233333222 22221111 135678888999999998875

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.38  E-value=3.5e-12  Score=108.94  Aligned_cols=133  Identities=17%  Similarity=0.180  Sum_probs=93.8

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcchhhhccccC-CCCce
Q psy13322         56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIA-NGFPM  133 (195)
Q Consensus        56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi~~~sK~l~-~G~~~  133 (195)
                      .++|++...++.+|.. ++.+.+++|.++|++ +++||+||+|..|...+. .... ...+-..-+-+|||.++ .|+|+
T Consensus       155 ~k~i~l~~p~NPTG~~-~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~GlRi  231 (357)
T PRK14809        155 ERIVYLTSPHNPTGSE-IPLDEVEALAERTDE-ETLVVVDEAYGEFAERPS-AVALVEERDDVAVLRTFSKAYGLAGLRL  231 (357)
T ss_pred             CcEEEEeCCCCCCCcC-CCHHHHHHHHHhCcc-CcEEEEechhhhccCCch-hHHHHhhCCCEEEEecchhHhcCcchhh
Confidence            3466676888889965 466778888888865 789999999998854332 1111 11111112448899998 89999


Q ss_pred             EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhh
Q psy13322        134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ||+++++++++.+....  .+++.+++++.++.++|+.-+ -++.++.++++++++.+.|+
T Consensus       232 G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~  290 (357)
T PRK14809        232 GYAVVPEEWADAYARVN--TPFAASELACRAGLAALDDDEHVERTVETARWAREYIREELD  290 (357)
T ss_pred             eeeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999988887642  356678888888888885311 13556677777888877774

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.38  E-value=8.1e-12  Score=106.38  Aligned_cols=129  Identities=14%  Similarity=0.165  Sum_probs=95.8

Q ss_pred             EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch---hhhccccC-CCCce
Q psy13322         58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI---VTMAKGIA-NGFPM  133 (195)
Q Consensus        58 avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi---~~~sK~l~-~G~~~  133 (195)
                      .++..| .+.+|. +.+.+.++++.+.|++++.++|+||+|..|... .   +.....-.+++   -+|||.+| .|+|+
T Consensus       134 v~l~nP-nNPTG~-~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-~---s~~~~~~~~~vi~l~SfSK~~gl~GlRi  207 (339)
T PRK06959        134 LIVVNP-NNPTAE-RLPAARLLRWHAQLAARGGTLIVDEAFADTLPA-A---SLAAHTDRPGLVVLRSVGKFFGLAGVRA  207 (339)
T ss_pred             EEEeCC-CCCCCC-CCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc-c---cchhccCCCCEEEEecChhhcCCcchhe
Confidence            455555 678896 557788999999999999999999999987421 1   11111012333   37899999 99999


Q ss_pred             EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ||+++++++++.+.....  .++.+.+++.++.++|+..+ .+..++.++++++++.+.|++
T Consensus       208 Gy~v~~~~li~~l~~~~~--~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~  267 (339)
T PRK06959        208 GFVLAAPALLAALRDALG--AWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRA  267 (339)
T ss_pred             EEEecCHHHHHHHHHhcC--CCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998876532  45567889999999986432 246778899999999998875

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.38  E-value=1.1e-11  Score=109.89  Aligned_cols=152  Identities=22%  Similarity=0.226  Sum_probs=103.0

Q ss_pred             HHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-ccc---
Q psy13322         40 YEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMH---  114 (195)
Q Consensus        40 ~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~---  114 (195)
                      .+.|++.+++... ..++++|++-...+.+|. +++.+.+++|.++|++||++||+||+|..+-+.+..+.+. ...   
T Consensus       175 ~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~-~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~  253 (468)
T PLN02450        175 ESALEEAYQQAQKLNLKVKGVLITNPSNPLGT-TTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDR  253 (468)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEecCCCCCCc-ccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhc
Confidence            4566666654211 136777777766778895 5678899999999999999999999999876655323222 111   


Q ss_pred             ---C--CCcc---hhhhccccC-CCCceEEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHhhc---c--hhHHH
Q psy13322        115 ---G--VSPD---IVTMAKGIA-NGFPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK---D--EELQY  179 (195)
Q Consensus       115 ---~--~~pd---i~~~sK~l~-~G~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~---~--~~~~~  179 (195)
                         +  ..+.   +-+|||.++ +|+++|++++++ .+.+.+......  ...+.+++.++.++|+...   .  ++.++
T Consensus       254 ~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~  331 (468)
T PLN02450        254 KLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSF--GLVSSQTQYLLSALLSDKKFTKNYLEENQK  331 (468)
T ss_pred             ccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence               1  1122   337799999 999999999985 456655543211  2346788888888886421   1  34567


Q ss_pred             HHHHHHHHHHHHhhc
Q psy13322        180 NCKQVSAQIIGYLRV  194 (195)
Q Consensus       180 ~l~~~~~~l~~~L~~  194 (195)
                      +++++++.+.+.|++
T Consensus       332 ~l~~rr~~l~~~L~~  346 (468)
T PLN02450        332 RLKQRQKKLVSGLEA  346 (468)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            788888888888865

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.38  E-value=9.4e-12  Score=107.40  Aligned_cols=140  Identities=18%  Similarity=0.160  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     +++++|+++++ +.+|.+.   ++|++|+++|++||+++|+|++|+.....+.    ...  ..+|
T Consensus       149 ~~~l~~~i~-----~~t~~viv~~~-~~~G~~~---~~l~~i~~la~~~g~~livD~~~~~~~~~~~----~~~--~~~d  213 (398)
T cd00613         149 LEALKEEVS-----EEVAALMVQYP-NTLGVFE---DLIKEIADIAHSAGALVYVDGDNLNLTGLKP----PGE--YGAD  213 (398)
T ss_pred             HHHHHHhcC-----CCeEEEEEECC-CCCceec---chHHHHHHHHHhcCCEEEEEeccccccCCCC----hHH--cCCC
Confidence            566776663     36889999986 4678773   5689999999999999999999863211111    111  2467


Q ss_pred             hhhh--cccc---C-CCCceEEEEecHHHHHHhhcc-----------------------------ccccCCCchHHHHHH
Q psy13322        120 IVTM--AKGI---A-NGFPMGAVVTTTEIAQVLTKA-----------------------------AHFNTFGGNPVGCVI  164 (195)
Q Consensus       120 i~~~--sK~l---~-~G~~~g~v~~~~~i~~~l~~~-----------------------------~~~~t~~~~p~~~~a  164 (195)
                      +++.  +|.+   + ||+.+|++.+++++.+.+...                             ...++++++++.+.+
T Consensus       214 ~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~  293 (398)
T cd00613         214 IVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALM  293 (398)
T ss_pred             EEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHH
Confidence            7654  5776   3 357889999988887765211                             113356667777777


Q ss_pred             HHHHHHhhcc---hhHHHHHHHHHHHHHHHhhc
Q psy13322        165 ASTVLDVIKD---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       165 a~aal~~~~~---~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.++++.+.+   +++.++++++++++++.|++
T Consensus       294 a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~  326 (398)
T cd00613         294 AAMYIVYLGPEGLKEIAERAHLNANYLAKRLKE  326 (398)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777776644   45678999999999999875

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.37  E-value=8.9e-12  Score=107.27  Aligned_cols=145  Identities=14%  Similarity=0.118  Sum_probs=96.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+++... .++++|++-+.++.+|.. .+.+.++.+.++|  ++++||+||+|..|... . .  .....-.++
T Consensus       154 ~~~l~~~~~~~~~-~~~k~i~l~~P~NPTG~~-~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~-~-~--~~~~~~~~~  225 (374)
T PRK02610        154 LAAAQSAIEQTQN-PPVRVVFVVHPNSPTGNP-LTAAELEWLRSLP--EDILVVIDEAYFEFSQT-T-L--VGELAQHPN  225 (374)
T ss_pred             HHHHHHHHHhhcC-CCceEEEEeCCCCCCCCC-CCHHHHHHHHhcc--CCcEEEEeccccccCcc-c-h--HHHHhcCCC
Confidence            5777777764221 266677776778889965 4677788888876  49999999999887321 1 1  111111223


Q ss_pred             ---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        120 ---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 ---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                         +-+|||++| .|+|+||+++++++++.+....  ..++.+.+++.++.++|+..+. .+.+....+.++.+.+.|++
T Consensus       226 ~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  303 (374)
T PRK02610        226 WVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQE  303 (374)
T ss_pred             EEEEEecchhccCcccceeeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               337799997 8999999999999988887653  2345578888888888865322 12223333446667776654

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.37  E-value=5.6e-12  Score=108.87  Aligned_cols=141  Identities=16%  Similarity=0.145  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+..    .++++|++....+.+|.+.+ .+   ++.++++.. +++|+||+|..|...+. ...  .....+.
T Consensus       164 ~~~l~~~~~~----~~~~~v~l~~P~NPTG~~~~-~~---~l~~l~~~~-~~vi~DeaY~~~~~~~~-~~~--~~~~~~~  231 (380)
T PLN03026        164 VPRIVEAVET----HKPKLLFLTSPNNPDGSIIS-DD---DLLKILELP-ILVVLDEAYIEFSTQES-RMK--WVKKYDN  231 (380)
T ss_pred             HHHHHHHHhc----cCCcEEEEeCCCCCCCCCCC-HH---HHHHHHhcC-CEEEEECcchhhcCCcc-hHH--HHHhCCC
Confidence            5777777642    25567888888889997665 44   444555443 99999999988754332 111  1111233


Q ss_pred             ---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        120 ---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 ---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                         +-+|||.+| .|||+||+++++++++.+.....  .++.+.+++.++.++|+..+ -++.++.++++++++.+.|++
T Consensus       232 viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~--~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~  309 (380)
T PLN03026        232 LIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ--PYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKE  309 (380)
T ss_pred             EEEEecchHhhcCccccceeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               237899999 99999999999998888765432  35567888888888886422 145677888889999888875

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.36  E-value=2e-11  Score=105.68  Aligned_cols=148  Identities=13%  Similarity=0.030  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhcCC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVP--ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~--~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      ++++++.|++...  .+++++|+++.+.++.|...+    +++|.++|++||+++|+|++|+ +|..+.   ....++..
T Consensus       141 ~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~~---~~~~~g~D  212 (387)
T PRK09331        141 PEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMPV---DGKKLGAD  212 (387)
T ss_pred             HHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcCC---CHHHcCCC
Confidence            6778887765310  026789999999999998877    9999999999999999999998 443221   12223433


Q ss_pred             cchhhhccccCCCCceEEEEecHHHHHHhhccccc--------cCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHH
Q psy13322        118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHF--------NTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQI  188 (195)
Q Consensus       118 pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~--------~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l  188 (195)
                      -.+.+++|+++++.++|++++++++++.+......        ...+.++...++++++++.+.+ .+..++..++.+++
T Consensus       213 ~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l  292 (387)
T PRK09331        213 FIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWF  292 (387)
T ss_pred             EEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445679999767899999999988876543211        1112233445556667765533 34455667778888


Q ss_pred             HHHhhcC
Q psy13322        189 IGYLRVV  195 (195)
Q Consensus       189 ~~~L~~l  195 (195)
                      ++.|+++
T Consensus       293 ~~~L~~l  299 (387)
T PRK09331        293 VDELEKI  299 (387)
T ss_pred             HHHHhcC
Confidence            8888753

>PRK05839 hypothetical protein; Provisional

Probab=99.36  E-value=8e-12  Score=107.63  Aligned_cols=136  Identities=12%  Similarity=-0.003  Sum_probs=94.6

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc----C--CCcch---hhhcc
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH----G--VSPDI---VTMAK  125 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~----~--~~pdi---~~~sK  125 (195)
                      ++++|++-..++.+|. .++.+.+++|.++|++||++||+||+|..+...+. +.+....    +  -.+.+   -+|||
T Consensus       155 ~~k~v~i~nP~NPTG~-~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~-~~s~~~~~~~~~~~~~~~vi~~~SfSK  232 (374)
T PRK05839        155 EVDLVILNSPNNPTGR-TLSLEELIEWVKLALKHDFILINDECYSEIYENTP-PPSLLEASILVGNESFKNVLVINSISK  232 (374)
T ss_pred             cccEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCC-CCCHhhhhcccCccccCcEEEEecccc
Confidence            3456666667788996 55788999999999999999999999998743222 2222111    0  11233   37799


Q ss_pred             ccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHh
Q psy13322        126 GIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       126 ~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L  192 (195)
                      .++ .|+|+||+++++++++.+........++.+.+++.++.+++..-+ -+++++.++++++.+.+.|
T Consensus       233 ~~~~~GlRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  301 (374)
T PRK05839        233 RSSAPGLRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREIL  301 (374)
T ss_pred             ccCCccceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc
Confidence            987 899999999999988887655333345567777877777774311 1456777788888777655

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.36  E-value=1.6e-11  Score=108.45  Aligned_cols=152  Identities=14%  Similarity=0.208  Sum_probs=100.6

Q ss_pred             HHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc----c
Q psy13322         40 YEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM----H  114 (195)
Q Consensus        40 ~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~----~  114 (195)
                      .+.+++.+++... +.++++|++-...+..|. +++++.+++|.++|++|+++||+||+|..+-+.+..+.+...    .
T Consensus       184 ~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~-~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~  262 (447)
T PLN02607        184 PQALEAAYQEAEAANIRVRGVLITNPSNPLGA-TVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEAR  262 (447)
T ss_pred             HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhc
Confidence            5667777654311 137777887666777885 677899999999999999999999999976444432333311    1


Q ss_pred             C---CCcchh---hhccccC-CCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhh---cc--hhHHHHH
Q psy13322        115 G---VSPDIV---TMAKGIA-NGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI---KD--EELQYNC  181 (195)
Q Consensus       115 ~---~~pdi~---~~sK~l~-~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~---~~--~~~~~~l  181 (195)
                      +   ....++   ++||.|| .|+|+|++++ ++++...+......  .+.+.+++.++.+.|+--   +.  ...++++
T Consensus       263 ~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~--~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l  340 (447)
T PLN02607        263 GYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLVSSQTQHLLASMLSDEEFTENYIRTNRERL  340 (447)
T ss_pred             CCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            1   122233   6699999 9999999998 56777766543211  133566777777776531   11  3445667


Q ss_pred             HHHHHHHHHHhhc
Q psy13322        182 KQVSAQIIGYLRV  194 (195)
Q Consensus       182 ~~~~~~l~~~L~~  194 (195)
                      +++.+.+.+.|++
T Consensus       341 ~~~~~~~~~~L~~  353 (447)
T PLN02607        341 RKRYEMIVQGLRR  353 (447)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777778777764

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.36  E-value=1.1e-11  Score=105.69  Aligned_cols=141  Identities=16%  Similarity=0.166  Sum_probs=98.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+...    ++++|++....+.+|....    .+++.+++++++.++|+||+|.++.  +......  ....+.
T Consensus       137 ~~~l~~~~~~~----~~k~v~l~~p~NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~~~--~~~~~~  204 (351)
T PRK14807        137 VGSFIKVIEKY----QPKLVFLCNPNNPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY--GNTIVDV--INEFEN  204 (351)
T ss_pred             HHHHHHHhhcc----CCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc--ccchHHH--hhhCCC
Confidence            56777776532    5567777778888997766    5666777888888999999998762  3211111  111223


Q ss_pred             h---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 I---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +   -+|||.++ .|+|+||+++++++++.+.....  .++.+++++.++.++|+...-++..+.++++++++.+.|++
T Consensus       205 vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~  281 (351)
T PRK14807        205 LIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKS--PYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSK  281 (351)
T ss_pred             EEEEecchHhcccchhceeeeecCHHHHHHHHHccC--CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3   37799999 99999999999999998875432  24457888888888886422244556777888888888754

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.36  E-value=2.2e-12  Score=115.48  Aligned_cols=142  Identities=17%  Similarity=0.209  Sum_probs=94.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS--NNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~--~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      .++|++++.     .++++|++....+.+|. +.+++.+++|.++|++  +|++||+||+|..|..  . +.+..  ...
T Consensus       231 ~~~l~~~~~-----~~tkai~l~nP~NPTG~-v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~-~~s~~--~~~  299 (527)
T PRK09275        231 DSELEKLRD-----PSIKALFLVNPSNPPSV-AMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD--D-FRSLF--AVL  299 (527)
T ss_pred             HHHHHhhcC-----CCCCEEEEeCCcCCcCC-CCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--c-ccCHH--HhC
Confidence            355666443     35667776666788885 6688999999999965  5999999999998742  2 22221  112


Q ss_pred             c-c---hhhhccccC-CCCceEEEEecHH-----HHHHh--------------------------------hccccccCC
Q psy13322        118 P-D---IVTMAKGIA-NGFPMGAVVTTTE-----IAQVL--------------------------------TKAAHFNTF  155 (195)
Q Consensus       118 p-d---i~~~sK~l~-~G~~~g~v~~~~~-----i~~~l--------------------------------~~~~~~~t~  155 (195)
                      | .   +-+|||+++ +|||+||++++++     +++.+                                ++.....|.
T Consensus       300 ~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~  379 (527)
T PRK09275        300 PYNTILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTA  379 (527)
T ss_pred             CCCEEEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhcc
Confidence            3 2   337799999 9999999999876     33322                                233344566


Q ss_pred             CchHHHHHH-H----HHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        156 GGNPVGCVI-A----STVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       156 ~~~p~~~~a-a----~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      +.+++.|.+ +    .++|+..++  +.+++.++++++.+.+.|
T Consensus       380 ~~s~p~Q~a~al~~~~all~~~~~~~~~~~~~~~~Rr~~l~~~L  423 (527)
T PRK09275        380 GLSTPQQVQMALFSLFALLDEEDAYKKAMKDIIRRRYKALYEGL  423 (527)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence            666666655 3    233443222  456788888888888776

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.36  E-value=1.9e-11  Score=109.23  Aligned_cols=152  Identities=13%  Similarity=0.107  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc----
Q psy13322         40 YEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH----  114 (195)
Q Consensus        40 ~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~----  114 (195)
                      ++.+++.+++.. ...++++|++-...+..|. +++.+.+++|.++|++|+++||+||+|..+.+.+..+.++...    
T Consensus       183 ~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~-~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~  261 (496)
T PLN02376        183 VDAADWAYKKAQESNKKVKGLILTNPSNPLGT-MLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDV  261 (496)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccc
Confidence            455555443211 0136777777777778895 6678999999999999999999999999876666423232111    


Q ss_pred             C---CCcc-h---hhhccccC-CCCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhc---c--hhHHHH
Q psy13322        115 G---VSPD-I---VTMAKGIA-NGFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK---D--EELQYN  180 (195)
Q Consensus       115 ~---~~pd-i---~~~sK~l~-~G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~---~--~~~~~~  180 (195)
                      +   ..++ +   -+|||.|| .|+|+|+++++ +.+.+.+.....  ....+++++.++.+.|+--+   +  ...+++
T Consensus       262 ~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~--~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~  339 (496)
T PLN02376        262 DISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSS--FGLVSSQTQLMLASMLSDDQFVDNFLMESSRR  339 (496)
T ss_pred             cccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhh--cCCCCHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence            1   1233 2   37799998 99999999995 566665543321  12346778887777775321   1  234666


Q ss_pred             HHHHHHHHHHHhhc
Q psy13322        181 CKQVSAQIIGYLRV  194 (195)
Q Consensus       181 l~~~~~~l~~~L~~  194 (195)
                      ++++.+.+.+.|++
T Consensus       340 l~~r~~~l~~~L~~  353 (496)
T PLN02376        340 LGIRHKVFTTGIKK  353 (496)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77888888887763

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.35  E-value=2.2e-11  Score=105.82  Aligned_cols=139  Identities=12%  Similarity=0.031  Sum_probs=93.9

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCcc---hhhhccccC-C
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSPD---IVTMAKGIA-N  129 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~pd---i~~~sK~l~-~  129 (195)
                      ++.+|++-..++.+|. +++.+.+++|.++|++||++||+||+|..|...+......... +....   +-+|||.+| .
T Consensus       173 ~~~~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~p  251 (402)
T TIGR03542       173 KIDIIYLCSPNNPTGT-VLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFT  251 (402)
T ss_pred             CceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCC
Confidence            4566777677888896 6678899999999999999999999999875433211111111 11112   347899998 8


Q ss_pred             CCceEEEEecHHHH--------HHhhccccccCCCchHHHHHHHHHHHHhh--c-chhHHHHHHHHHHHHHHHhhc
Q psy13322        130 GFPMGAVVTTTEIA--------QVLTKAAHFNTFGGNPVGCVIASTVLDVI--K-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       130 G~~~g~v~~~~~i~--------~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+|+||++++++++        ..+.........+.+++++.++.++++..  . ..+.++.++++++++.+.|++
T Consensus       252 GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  327 (402)
T TIGR03542       252 GVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEA  327 (402)
T ss_pred             CcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998876        22211111122245778888877777532  1 134567778888888888764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.34  E-value=2.9e-12  Score=110.23  Aligned_cols=145  Identities=15%  Similarity=0.126  Sum_probs=100.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~p  118 (195)
                      ++.|++.+.+     +.++|++....+.+|.+ .+.+.+++|.++|++++ ++|+||+|..|...+. .... ....-.+
T Consensus       141 ~~~l~~~~~~-----~~~~v~i~~P~NPTG~~-~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~-~~~~~~~~~~~~  212 (366)
T PRK01533        141 LDEISSVVDN-----DTKIVWICNPNNPTGTY-VNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD-FPETLPLLEKHK  212 (366)
T ss_pred             HHHHHHHhCc-----CCcEEEEeCCCCCCCCC-cCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc-CcchhHHhccCC
Confidence            5667766642     34456666668889965 46788999999998876 6777999987744332 1111 1112123


Q ss_pred             ch---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhh
Q psy13322        119 DI---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       119 di---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~  193 (195)
                      .+   -+|||.+| .|+++||+++++++++.+....  ..++.|++++.++.++|+..+ .+.+++..+++++++.+.|+
T Consensus       213 ~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~  290 (366)
T PRK01533        213 NILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVR--LPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCK  290 (366)
T ss_pred             CEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33   37799999 9999999999999998887643  357789999999999996421 13455666677777777665


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      .
T Consensus       291 ~  291 (366)
T PRK01533        291 E  291 (366)
T ss_pred             h
Confidence            3

>PLN02242 methionine gamma-lyase

Probab=99.34  E-value=1.1e-11  Score=108.66  Aligned_cols=139  Identities=14%  Similarity=0.030  Sum_probs=98.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+..    .++++|++|.+.++.|.+..    +++|.++|++||++||+||+|+.+. .+.     ..++  .|
T Consensus       152 ~e~l~~~i~~----~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~~-~~~-----~~~g--~d  215 (418)
T PLN02242        152 LEAVKKAVVP----GKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPMV-LSP-----ARLG--AD  215 (418)
T ss_pred             HHHHHHhcCc----CCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCCccC-CCH-----HHcC--Cc
Confidence            5677776642    14779999999999998876    9999999999999999999997442 221     1123  35


Q ss_pred             hh--hhccccC-CCCc-eEEEEecHHHHHHhhccccc--cCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IV--TMAKGIA-NGFP-MGAVVTTTEIAQVLTKAAHF--NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~--~~sK~l~-~G~~-~g~v~~~~~i~~~l~~~~~~--~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++  ++||.++ .|++ +|++++++++++.+......  ..++.++..+.|++.++..-.-+..+++.+++++++.+.|+
T Consensus       216 ivv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~  295 (418)
T PLN02242        216 VVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMK  295 (418)
T ss_pred             EEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            44  6689998 5776 58999999888887655332  23344455556665555422224566788999999999887


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       296 ~  296 (418)
T PLN02242        296 E  296 (418)
T ss_pred             h
Confidence            5

>PRK09265 aminotransferase AlaT; Validated

Probab=99.34  E-value=2.2e-11  Score=105.85  Aligned_cols=146  Identities=15%  Similarity=0.174  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .++|++.+.     .++.+|++....+.+|. +.+.+.+++|.++|++||++||+||+|..+-+.+..+.+...  +.++
T Consensus       158 ~~~l~~~~~-----~~~~~v~l~~P~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~  229 (404)
T PRK09265        158 LDDIRSKIT-----PRTKAIVIINPNNPTGA-VYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIAS--LAPD  229 (404)
T ss_pred             HHHHHHhcc-----ccceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHH--cCCC
Confidence            466666654     24556666666778885 556788999999999999999999999988654432222211  2222


Q ss_pred             --h---hhhccccC-CCCceEEEEe--cHHH----HHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhH---HHHHHH
Q psy13322        120 --I---VTMAKGIA-NGFPMGAVVT--TTEI----AQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EEL---QYNCKQ  183 (195)
Q Consensus       120 --i---~~~sK~l~-~G~~~g~v~~--~~~i----~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~---~~~l~~  183 (195)
                        +   -+|||.++ .|+|+||+++  ++++    ++.+... ...+++.|.+++.++.++|+..+. ..+   ..++.+
T Consensus       230 ~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  308 (404)
T PRK09265        230 LLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYE  308 (404)
T ss_pred             ceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence              2   35799997 8999999996  3433    3333211 223456678888888888853221 122   235677


Q ss_pred             HHHHHHHHhhc
Q psy13322        184 VSAQIIGYLRV  194 (195)
Q Consensus       184 ~~~~l~~~L~~  194 (195)
                      +++.+.+.|++
T Consensus       309 ~r~~~~~~L~~  319 (404)
T PRK09265        309 QRDRAWELLNA  319 (404)
T ss_pred             HHHHHHHHHhc
Confidence            78888887764

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.32  E-value=5.2e-12  Score=113.01  Aligned_cols=142  Identities=15%  Similarity=0.229  Sum_probs=91.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--CCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--NGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      .++|++++.     .++++|++....+.+|. +.+.+.+++|.++|++|  +++||+||+|..|..  . +.+..  ...
T Consensus       230 ~~~l~~~~~-----~~~kai~l~nP~NPTG~-vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~-~~sl~--~~~  298 (521)
T TIGR03801       230 DKELEKLRD-----PSIKALFVVNPSNPPSV-AMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--D-FRSLF--AEL  298 (521)
T ss_pred             HHHHHHhcC-----CCCcEEEEeCCCCCCCC-CCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--c-ccchh--hhC
Confidence            355655433     25666766555677885 66789999999999987  999999999997742  2 22221  112


Q ss_pred             c-c---hhhhccccC-CCCceEEEEecHH-HHH------------Hh------------------------hccccccCC
Q psy13322        118 P-D---IVTMAKGIA-NGFPMGAVVTTTE-IAQ------------VL------------------------TKAAHFNTF  155 (195)
Q Consensus       118 p-d---i~~~sK~l~-~G~~~g~v~~~~~-i~~------------~l------------------------~~~~~~~t~  155 (195)
                      | .   +-+|||.++ +|||+||++++++ +.+            .+                        +.....+|.
T Consensus       299 ~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~  378 (521)
T TIGR03801       299 PYNTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTA  378 (521)
T ss_pred             CCCEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccC
Confidence            3 2   336799998 9999999999864 211            11                        122233455


Q ss_pred             CchHHHHH-----HHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        156 GGNPVGCV-----IASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       156 ~~~p~~~~-----aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      +.+...+.     ++.++++....  ++.++.++++.+.+.+.|
T Consensus       379 g~s~p~Q~q~al~a~~all~~~~~y~~~~~~~~~~R~~~l~~~L  422 (521)
T TIGR03801       379 GLSTPQQVQMALFSLFALMDKENAYKAETKDICRRREKLLFRGL  422 (521)
T ss_pred             CCCcHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhc
Confidence            55554444     34444443222  456778888888888776

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.31  E-value=1.8e-11  Score=104.76  Aligned_cols=131  Identities=11%  Similarity=0.064  Sum_probs=91.0

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcch---hhhccccC-CC
Q psy13322         56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDI---VTMAKGIA-NG  130 (195)
Q Consensus        56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi---~~~sK~l~-~G  130 (195)
                      .+++++-...+.+|.+..    .++|.++++++++ +|+||+|..|.+.+. ..+. ......+.+   -+|||.++ .|
T Consensus       149 ~~~~~l~nP~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~-~~s~~~~~~~~~~vi~i~S~SK~~~l~G  222 (360)
T PRK07392        149 NDGLLLNNPHNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDA-EQSLIPCLAEYPNLIILRSLTKFYSLPG  222 (360)
T ss_pred             CCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCcc-ccchHHHhhcCCCEEEEEechhhhcCCc
Confidence            345555566888998665    4456777888885 666999998865553 2122 111222333   37799999 99


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +|+||+++++++++.+....  ..++.+.+++.++.++|+... .+.+.+.++++++++.+.|++
T Consensus       223 lRiG~~v~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  285 (360)
T PRK07392        223 LRLGYAIAHPDRLQRWQQWR--DPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLAS  285 (360)
T ss_pred             hheeeeeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999888876533  345678899999988886422 134456788888888888865

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.31  E-value=2.8e-11  Score=103.97  Aligned_cols=133  Identities=14%  Similarity=0.160  Sum_probs=94.8

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch---hhhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI---VTMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi---~~~sK~l~-~G  130 (195)
                      ++.+|++....+.+|.+. +.+.++++.+.|+ +++++|+||+|..|..... .  ....+..+++   -+|||++| .|
T Consensus       152 ~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~-~--~~~~~~~~~vi~~~SfSK~~gl~G  226 (364)
T PRK04781        152 NAKLVFLCSPSNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFSDVPS-A--VGLLARYDNLAVLRTLSKAHALAA  226 (364)
T ss_pred             CCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhcCCcc-h--HHHHhhCCCEEEEecChhhccccc
Confidence            556777777788899755 5677888887774 4899999999998753211 1  1111223343   37899999 99


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--c-hhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--D-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +|+||+++++++++.+....  ..++.+.+++.++.++|+...  . .+.++.++++++.+.+.|++
T Consensus       227 lRvGy~v~~~~l~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~  291 (364)
T PRK04781        227 ARIGSLIANAELIAVLRRCQ--APYPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQ  291 (364)
T ss_pred             ceeeeeeCCHHHHHHHHhcc--CCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999887653  245667788888888886431  1 34456678888888888865

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.30  E-value=1.7e-11  Score=103.31  Aligned_cols=149  Identities=13%  Similarity=-0.011  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHhcCCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc--ccCCCccccccc
Q psy13322         39 FYEQLVNAFQYNVPI--TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG--RTGDNYWGFEMH  114 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~--~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g--r~G~~~~~~~~~  114 (195)
                      ++++|++++.+..+.  .++++|+++...+.+| .. +.+.+++|.++|++||+++|+||+|..+.  ..|.   .....
T Consensus       109 d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~-~~-~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~---~~~~~  183 (338)
T cd06502         109 TPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGT-VY-PLDELKAISALAKENGLPLHLDGARLANAAAALGV---ALKTY  183 (338)
T ss_pred             CHHHHHHHhhccCCCcCCcceEEEEEeecCCcc-cc-CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC---CHHHH
Confidence            367888887643110  2567888887766544 33 77889999999999999999999985221  1121   12112


Q ss_pred             CCCcchh--hhccccC-CCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322        115 GVSPDIV--TMAKGIA-NGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII  189 (195)
Q Consensus       115 ~~~pdi~--~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~  189 (195)
                      ...+|++  ++||.++ .|  .+++++++++++.+....  +..+++.+++++++++++|+.....+..+++.++++++.
T Consensus       184 ~~~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~  261 (338)
T cd06502         184 KSGVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLA  261 (338)
T ss_pred             HhcCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            2234544  6679997 33  234557888888776543  234555677788888888875322455678888889999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       262 ~~L~~  266 (338)
T cd06502         262 EALEE  266 (338)
T ss_pred             HHHHh
Confidence            98875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.30  E-value=2.8e-11  Score=104.20  Aligned_cols=137  Identities=16%  Similarity=0.069  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+.     .++++|++|++.++.|.+.+    +++|.++|++||+++|+|++|+. +....   .   .....|
T Consensus       115 ~~~l~~~i~-----~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~~-~~~~~---~---~~~g~D  178 (369)
T cd00614         115 PEALEAAIK-----PETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFAT-PYLQR---P---LELGAD  178 (369)
T ss_pred             HHHHHHhcC-----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc-hhcCC---h---hhhCCc
Confidence            566666664     25778999999999998877    99999999999999999999863 22111   1   123456


Q ss_pred             hh--hhccccCC-C-CceEEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IV--TMAKGIAN-G-FPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~--~~sK~l~~-G-~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++  +++|.+++ | .++|++++++ ++++.+...........+|+.+++++..|+.+  +..+++..++..++.+.|++
T Consensus       179 ivv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl--~~r~~~~~~na~~la~~L~~  256 (369)
T cd00614         179 IVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTL--PLRMERHSENALKVAEFLEK  256 (369)
T ss_pred             EEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHHHc
Confidence            66  66799984 4 6789999987 78887765443334456788777776666543  33567778888888888764

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.30  E-value=7.3e-11  Score=104.87  Aligned_cols=141  Identities=16%  Similarity=0.043  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIA-ESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aaviv-Epv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      ++++|++++.+..+  +  .||+ ++++|+.++       +++|+++|++||++|++|++|. +|..+..... ...+ .
T Consensus       171 D~d~Le~~l~~~~p--k--lIv~~~S~~s~~~D-------~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~-~p~~-~  236 (475)
T PLN03226        171 DYDKLEKKAMLFRP--K--LIIAGASAYPRDWD-------YARMRKIADKVGALLMCDMAHI-SGLVAAQEAA-SPFE-Y  236 (475)
T ss_pred             CHHHHHHHHhhcCC--e--EEEEecCcCCCccC-------HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCC-CCCC-C
Confidence            47899998876532  2  4454 888876654       6688999999999999999998 6555532211 1112 3


Q ss_pred             cchh--hhccccCCCCceEEEEecHHHH-----------HH--hhccc--cccCCCchHHHHHHHHHHHHhhcc---hhH
Q psy13322        118 PDIV--TMAKGIANGFPMGAVVTTTEIA-----------QV--LTKAA--HFNTFGGNPVGCVIASTVLDVIKD---EEL  177 (195)
Q Consensus       118 pdi~--~~sK~l~~G~~~g~v~~~~~i~-----------~~--l~~~~--~~~t~~~~p~~~~aa~aal~~~~~---~~~  177 (195)
                      .|++  +++|+|.| -+.|++++++++.           +.  ..+..  ..++.+.++..+++..++|+.+.+   +..
T Consensus       237 ~Div~~t~hK~L~G-P~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~  315 (475)
T PLN03226        237 CDVVTTTTHKSLRG-PRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAY  315 (475)
T ss_pred             CeEEEecCcccccC-CCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHH
Confidence            5765  55699953 1237777777543           32  22222  233444567778888888998754   356


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      .+++.++.++|.+.|++
T Consensus       316 ~~~~~~na~~L~~~L~~  332 (475)
T PLN03226        316 QKQVKANAAALANRLMS  332 (475)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88999999999998864

>PRK09105 putative aminotransferase; Provisional

Probab=99.30  E-value=2.1e-11  Score=104.96  Aligned_cols=131  Identities=14%  Similarity=0.135  Sum_probs=92.2

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh---hhccccC-CCC
Q psy13322         56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV---TMAKGIA-NGF  131 (195)
Q Consensus        56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~---~~sK~l~-~G~  131 (195)
                      ..+|++-...+.+|.+ ++.+.++++.+.| ++++++|+||+|..|+. +. . .....+..++++   +|||++| .||
T Consensus       166 ~~~v~l~nP~NPTG~~-~~~~~l~~l~~~~-~~~~~lIvDEaY~~f~~-~~-s-~~~~~~~~~~vi~~~SfSK~~g~~Gl  240 (370)
T PRK09105        166 AGLIYICNPNNPTGTV-TPRADIEWLLANK-PAGSVLLVDEAYIHFSD-AP-S-VVDLVAQRKDLIVLRTFSKLYGMAGM  240 (370)
T ss_pred             CCEEEEeCCCCCCCcC-cCHHHHHHHHHhC-CCCcEEEEECchHHhcc-Cc-c-hHHHHhhCCCEEEEecccHhhcCCcc
Confidence            4456655567889975 6778888888876 45999999999976642 11 0 111112234533   6799999 899


Q ss_pred             ceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        132 PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       132 ~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+||+++++++++.+...   ..+..+..++.++.++|+..+ -+..+++++++++++.+.|++
T Consensus       241 RiG~~v~~~~~i~~l~~~---~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~  301 (370)
T PRK09105        241 RLGLAAARPDLLAKLARF---GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKK  301 (370)
T ss_pred             ceeeeecCHHHHHHHHhc---CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888765   233466777888888886421 145567888889999888874

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.30  E-value=4.8e-11  Score=105.71  Aligned_cols=155  Identities=14%  Similarity=0.068  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--ccccCCCccccccc--
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG--FGRTGDNYWGFEMH--  114 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g--~gr~G~~~~~~~~~--  114 (195)
                      +++.|++.+....+ +++++|+++...+.+|-.+++.+.|++|+++|++||++||+|++|..  ..+...+..+....  
T Consensus       162 d~e~Le~~i~~~~~-~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si  240 (460)
T PRK13238        162 DLEKLEALIEEVGA-ENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSI  240 (460)
T ss_pred             CHHHHHHHHhhcCC-CceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCH
Confidence            36889999886543 37899999988887776778899999999999999999999998752  11111000001100  


Q ss_pred             -CCCcchhhhccccC-CCCc------eEEEEec-HHHHHHhhccc---c-ccCCCchHHH-HHHHHHHHHhhcchhHHHH
Q psy13322        115 -GVSPDIVTMAKGIA-NGFP------MGAVVTT-TEIAQVLTKAA---H-FNTFGGNPVG-CVIASTVLDVIKDEELQYN  180 (195)
Q Consensus       115 -~~~pdi~~~sK~l~-~G~~------~g~v~~~-~~i~~~l~~~~---~-~~t~~~~p~~-~~aa~aal~~~~~~~~~~~  180 (195)
                       ++...+..+||.++ +||+      .|+++++ +++++.++...   + ..|+++.+.. +.|...+|+...+++..+.
T Consensus       241 ~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~  320 (460)
T PRK13238        241 KEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAY  320 (460)
T ss_pred             HHHhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHH
Confidence             11111123344444 3433      3466666 47888776653   2 3477876665 4555556665434454555


Q ss_pred             HHHHHHHHHHHhhc
Q psy13322        181 CKQVSAQIIGYLRV  194 (195)
Q Consensus       181 l~~~~~~l~~~L~~  194 (195)
                      ..+++++|.+.|++
T Consensus       321 ~~~~~~~l~~~L~~  334 (460)
T PRK13238        321 RIGQVEYLGEGLEE  334 (460)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55567889888865

>PLN02721 threonine aldolase

Probab=99.27  E-value=9.7e-11  Score=99.26  Aligned_cols=151  Identities=13%  Similarity=0.045  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHhcCCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         39 FYEQLVNAFQYNVPI--TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~--~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      +++.|++.+++....  .+.++|++++++++.|...++.+++++|.++|++||++||+||+|. ++..............
T Consensus       119 d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~  197 (353)
T PLN02721        119 DLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVK  197 (353)
T ss_pred             CHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhh
Confidence            368888888743211  2678999999988765567788999999999999999999999986 3321100001111111


Q ss_pred             Ccc--hhhhccccCCCCceEE-EEecHHHHHHhhccccccCCCch--HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy13322        117 SPD--IVTMAKGIANGFPMGA-VVTTTEIAQVLTKAAHFNTFGGN--PVGCVIASTVLDVIKDEELQYNCKQVSAQIIGY  191 (195)
Q Consensus       117 ~pd--i~~~sK~l~~G~~~g~-v~~~~~i~~~l~~~~~~~t~~~~--p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~  191 (195)
                      ..|  ++++||++++  ++|+ +++++++++.+.........+.+  +..+++++.+++..  .+..++..++.+++.+.
T Consensus       198 ~~d~~~~s~sK~l~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~  273 (353)
T PLN02721        198 AADSVSVCLSKGLGA--PVGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQEN--VPKLEDDHKKAKLLAEG  273 (353)
T ss_pred             hCCEEEEecccccCC--ceeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            223  4567899973  3554 66788887765443211111111  22233344444432  11233445667788887


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       274 L~~  276 (353)
T PLN02721        274 LNQ  276 (353)
T ss_pred             HHh
Confidence            764

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.27  E-value=3.9e-11  Score=103.12  Aligned_cols=145  Identities=16%  Similarity=0.140  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-ccc-CCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMH-GVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~-~~~  117 (195)
                      ++++++.+..     +.++|++....+.+|. .++.+.+++|.++|++ ++++|+||+|..|...+. +.+. ... ...
T Consensus       149 ~~~l~~~~~~-----~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~  220 (371)
T PRK05166        149 LDALCAAVAR-----APRMLMFSNPSNPVGS-WLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDD-YPSALTLLKARG  220 (371)
T ss_pred             HHHHHHhhhc-----CCCEEEEeCCCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcC-cccHHHHHhhcC
Confidence            5667776653     2345666666788896 4567778888888864 899999999998753222 2121 111 112


Q ss_pred             cchh---hhccccC-CCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHH
Q psy13322        118 PDIV---TMAKGIA-NGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGY  191 (195)
Q Consensus       118 pdi~---~~sK~l~-~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~  191 (195)
                      +.++   +|||.++ .|+|+||+++ ++++++.+....  ..++.+.+++.++.++|..-+ -++.++.++++++++.+.
T Consensus       221 ~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~  298 (371)
T PRK05166        221 LPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVR--TPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKE  298 (371)
T ss_pred             CCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            2333   6899999 9999999775 678888776532  235568888888888886321 144567778888888888


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       299 L~~  301 (371)
T PRK05166        299 LAE  301 (371)
T ss_pred             HHH
Confidence            864

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.26  E-value=7.4e-11  Score=102.76  Aligned_cols=136  Identities=16%  Similarity=0.143  Sum_probs=93.3

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccCCCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIANGF  131 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~~G~  131 (195)
                      +++++++-...+.+|.+ ++.+.+++|.++|++||++||+||+|..+ .....+..... ...+.   +.+|||....|+
T Consensus       179 ~~~~i~l~~P~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~~~~~-~~~~~vI~~~SfSK~~~pGl  255 (416)
T PRK09440        179 DTGAICVSRPTNPTGNV-LTDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFSEATP-LWNPNIILCMSLSKLGLPGV  255 (416)
T ss_pred             CceEEEEecCCCCCCcc-CCHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchhhcCc-cccCCeEEEecccccCCCcc
Confidence            55677776778889965 57889999999999999999999999643 11110101100 11223   347799734899


Q ss_pred             ceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--c---hhHHHHHHHHHHHHHHHhh
Q psy13322        132 PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--D---EELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       132 ~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~---~~~~~~l~~~~~~l~~~L~  193 (195)
                      |+||+++++++++.+.........+.+++++.++.++|+...  +   +.++..++++.+.+++.|+
T Consensus       256 RiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~  322 (416)
T PRK09440        256 RCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLR  322 (416)
T ss_pred             eEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888765444445668889999988886432  1   1245556667777766664

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.26  E-value=1.7e-10  Score=100.92  Aligned_cols=141  Identities=16%  Similarity=0.082  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIA-ESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aaviv-Epv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      +++++++.+...    +.++|++ ++++|+.|   +    +++|.++|++||++||+|++|+ +|..+.+. .....+ .
T Consensus       156 d~~~le~~l~~~----~~klVi~~~~~~g~~~---d----l~~l~~la~~~g~~livD~Aha-~G~~~~g~-~~~~~~-~  221 (416)
T PRK13034        156 DYDEVEELAKEH----KPKLIIAGFSAYPREL---D----FARFREIADEVGALLMVDMAHI-AGLVAAGE-HPNPFP-H  221 (416)
T ss_pred             CHHHHHHHHhhc----CCeEEEECCCcccccc---C----HHHHHHHHHHcCCEEEEeCccc-ccCcccCC-CCCCCC-C
Confidence            367788877643    3457777 57766544   3    8888999999999999999998 66555421 111112 3


Q ss_pred             cchh--hhccccCCCCceEEEEecHH-HHHHhhcccccc-CCCc-hHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHH
Q psy13322        118 PDIV--TMAKGIANGFPMGAVVTTTE-IAQVLTKAAHFN-TFGG-NPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIG  190 (195)
Q Consensus       118 pdi~--~~sK~l~~G~~~g~v~~~~~-i~~~l~~~~~~~-t~~~-~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~  190 (195)
                      .|++  +++|+++|+. .|+++++++ +.+.++...+.. +.+. ++..++++++.++.++.  .+.+++++++.++|++
T Consensus       222 ~Di~~~s~~K~l~g~~-GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~  300 (416)
T PRK13034        222 AHVVTTTTHKTLRGPR-GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAE  300 (416)
T ss_pred             ceEEEEeCcccCCCCC-CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence            5655  5569996432 467777654 444444332222 1222 33333344455555432  4568999999999999


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       301 ~L~~  304 (416)
T PRK13034        301 VLKE  304 (416)
T ss_pred             HHHH
Confidence            9864

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.25  E-value=6.9e-11  Score=102.23  Aligned_cols=137  Identities=15%  Similarity=0.126  Sum_probs=92.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     .++++|++|.+.++.|.+.+    +++|.++|+++|+++|+||+++.. ....   ..   ...+|
T Consensus       129 ~~~l~~~i~-----~~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~-~~~~---pl---~~g~D  192 (380)
T TIGR01325       129 LNAWEAAVK-----PNTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFATP-VLQQ---PL---KLGAD  192 (380)
T ss_pred             HHHHHHhcC-----CCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccCC---ch---hhCCC
Confidence            455665553     36789999999999998876    999999999999999999998732 1111   11   23457


Q ss_pred             hhh--hccccCC-CCce-EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVT--MAKGIAN-GFPM-GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~--~sK~l~~-G~~~-g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++  ++|.+++ |..+ |++++++++++.+...........+|..+..++..++.+..  ..++..++...+.+.|++
T Consensus       193 ivv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~--r~~~~~~~a~~la~~L~~  269 (380)
T TIGR01325       193 VVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLETLSL--RMQKQFDSALAIAEWLQA  269 (380)
T ss_pred             EEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHHHc
Confidence            765  5799985 5654 77888888877776543222233466766666666665532  455566666666666653

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.24  E-value=2.5e-10  Score=96.58  Aligned_cols=144  Identities=13%  Similarity=0.153  Sum_probs=97.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+++++.+.++   .++..|++--..+.+|.+.+    +++|.++|++||+++|+|++|+ +|..   .+.+..+++..-
T Consensus       113 ~~~l~~~l~~~---~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~livD~~~s-~g~~---~~~~~~~~~d~~  181 (355)
T TIGR03301       113 LNRIEEALAAD---PDITHVATVHHETTTGILNP----LEAIAKVARSHGAVLIVDAMSS-FGAI---PIDIEELDVDAL  181 (355)
T ss_pred             HHHHHHHHHhC---CCceEEEEEecCCcccchhH----HHHHHHHHHHcCCEEEEEeccc-cCCc---ccchhhcCccEE
Confidence            67888888753   24545554344556787766    8999999999999999999887 5422   222333333222


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccc-----------------cccCCCchHHHHHHHHHHHHhhcc----hhHH
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAA-----------------HFNTFGGNPVGCVIASTVLDVIKD----EELQ  178 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~-----------------~~~t~~~~p~~~~aa~aal~~~~~----~~~~  178 (195)
                      +.+++|+++++..+|++++++++++.+....                 ....++.++..+.++.++++.+.+    ++..
T Consensus       182 ~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~  261 (355)
T TIGR03301       182 IASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARI  261 (355)
T ss_pred             EecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHH
Confidence            3466799864333799999999887765211                 012335577777888888887633    4466


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++++++++++++.|++
T Consensus       262 ~~~~~~~~~~~~~L~~  277 (355)
T TIGR03301       262 ARYRRNRELLVDGLRA  277 (355)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7888999999998865

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.24  E-value=1.3e-10  Score=102.89  Aligned_cols=150  Identities=16%  Similarity=0.150  Sum_probs=115.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC---
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG---  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~---  115 (195)
                      .+.|++.+.++    +++++.+-| .++.+|. ..+.+-=++|.++|++||++||=||+++.|.+.+...-+...+.   
T Consensus       215 ~e~le~~~~~~----~~k~~y~~P~~qNPtG~-tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~  289 (459)
T COG1167         215 PEALEEALAQW----KPKAVYVTPTFQNPTGV-TMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPG  289 (459)
T ss_pred             HHHHHHHHhhc----CCcEEEECCCCCCCCCC-ccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCC
Confidence            68888888864    566788888 6677886 55677789999999999999999999998876654221122221   


Q ss_pred             CCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh--hcc--hhHHHHHHHHHHHHHHH
Q psy13322        116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV--IKD--EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~--~~~--~~~~~~l~~~~~~l~~~  191 (195)
                      -.--+-+|||.++.|+++||+++++++++.+....+..+.+.+++.+.+...-+..  ..+  ..++..++++++.+.+.
T Consensus       290 rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~  369 (459)
T COG1167         290 RVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEA  369 (459)
T ss_pred             CEEEEeeehhhcccccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            11225599999999999999999999999998877777888888888877777763  222  56778888888888888


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       370 L~~  372 (459)
T COG1167         370 LAE  372 (459)
T ss_pred             HHH
Confidence            864

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.24  E-value=6.5e-11  Score=101.63  Aligned_cols=132  Identities=20%  Similarity=0.293  Sum_probs=99.5

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh---hhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV---TMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~---~~sK~l~-~G  130 (195)
                      +...|++-...+.+|... +.+.++++.+.+.+ +.+||+||++..|..  ..  +.......++++   ||||++| .|
T Consensus       145 ~~~lv~i~nPNNPTG~~~-~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~--~~--~~~l~~~~~nlivlRTfSKa~gLAG  218 (356)
T COG0079         145 KTKLVFLCNPNNPTGTLL-PREELRALLEALPE-GGLVVIDEAYIEFSP--ES--SLELLKYPPNLIVLRTFSKAFGLAG  218 (356)
T ss_pred             CCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCC-CcEEEEeCchhhcCC--ch--hhhhccCCCCEEEEEecHHhhhcch
Confidence            455677777778888655 56778888888888 999999999998854  21  122222223343   8899999 99


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +|+||+++++++++.+....  ..|+.|.++++++.++|+.-+. ++..+.+.+.+++|.+.|+.
T Consensus       219 lRlGy~ia~~~~i~~l~~vr--~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~  281 (356)
T COG0079         219 LRVGYAIANPELIAALNKVR--PPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKA  281 (356)
T ss_pred             hceeeccCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998753  3456678999999998876432 56778888889999988875

>PRK06460 hypothetical protein; Provisional

Probab=99.23  E-value=1.4e-10  Score=100.31  Aligned_cols=127  Identities=14%  Similarity=0.093  Sum_probs=90.6

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh--hhccccCC--C
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV--TMAKGIAN--G  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~--~~sK~l~~--G  130 (195)
                      ++++|++|.+.++.|.+.+    +++|.++|++||+++|+||+|... ....   .. ..+  .|++  ++||.++|  +
T Consensus       130 ~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~-~~~~---~l-~~~--~divv~S~sK~l~G~~~  198 (376)
T PRK06460        130 RYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFSTP-INQK---PL-ELG--ADIVVHSASKFLAGHND  198 (376)
T ss_pred             CceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC---hh-hcC--CCEEEeecceeccCCCC
Confidence            6779999999999998777    788999999999999999998732 2111   11 122  3554  66899973  3


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ..+|++++++++++.+.......+.+.+|..+..++..++.+  +..++++.+++++|.+.|++
T Consensus       199 ~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l--~~r~~~~~~n~~~l~~~L~~  260 (376)
T PRK06460        199 VIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTL--KIRMDVINRNAEQIAEFLEG  260 (376)
T ss_pred             ceEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhH--HHHHHHHHHHHHHHHHHHHc
Confidence            568999999998888865443334445665555554555544  34677888999999888864

>PRK07049 methionine gamma-lyase; Validated

Probab=99.23  E-value=2.2e-10  Score=100.65  Aligned_cols=145  Identities=14%  Similarity=0.156  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH---cCCEEEEeccccCccccCCCcccccccCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS---NNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~---~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      .+.+++.+.+...+.++++|++|+..++.|.+. +.+.+.+|++.|++   +++++|+||++.+.....    ... ++ 
T Consensus       159 ~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~-d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~----pl~-~g-  231 (427)
T PRK07049        159 EAAIGAAAEAAAAKGRVSLILIETPANPTNSLV-DVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK----PLE-HG-  231 (427)
T ss_pred             HHHHHHHHHhhccCCCceEEEEECCCCCCCccc-CHHHHHHHHHHhhhcccCCCEEEEECCccccccCC----ccc-cC-
Confidence            355666665332113688999999999999765 44445555544432   799999999976432111    111 22 


Q ss_pred             Ccchh--hhccccC--CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322        117 SPDIV--TMAKGIA--NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       117 ~pdi~--~~sK~l~--~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L  192 (195)
                       .||+  ++||.++  +|+++|++++++++++.+.........+.+|+.+.+++..|+.+  ...+++..++.+.+.+.|
T Consensus       232 -~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl--~~R~~~~~~~a~~la~~L  308 (427)
T PRK07049        232 -ADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETL--VLRMERANRNARAVAEFL  308 (427)
T ss_pred             -CCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHH
Confidence             3544  7789999  57999999999998888765433334456888888887777654  334566677888888877


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       309 ~~  310 (427)
T PRK07049        309 RD  310 (427)
T ss_pred             Hh
Confidence            64

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.22  E-value=6.2e-11  Score=101.17  Aligned_cols=142  Identities=14%  Similarity=0.130  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~~p  118 (195)
                      ++.|++.+...    ++++|++-...+.+|.+. +.+.+++|.++|   ++++|+||+|..|... . +.. ....+-.-
T Consensus       142 ~~~l~~~~~~~----~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~~---~~~ii~De~y~~~~~~-~-~~~~~~~~~~vi  211 (356)
T PRK04870        142 LPAMLAAIAEH----RPALVFLAYPNNPTGNLF-DDADVERIIEAA---PGLVVVDEAYQPFAGD-S-WLPRLARFPNLL  211 (356)
T ss_pred             HHHHHHHhhcC----CCCEEEEcCCCCCCCCCC-CHHHHHHHHHHC---CCEEEEECCchhhcCc-c-hHHHHhhCCCEE
Confidence            57777777643    445666655577888655 667788887777   7899999999877431 1 111 11111111


Q ss_pred             chhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      -+-+||| ++ .|+|+||+++++++++.+....  ..++.+.+++.++..+++..+. ++.+++++++++++.+.|++
T Consensus       212 ~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  286 (356)
T PRK04870        212 VMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVR--PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAA  286 (356)
T ss_pred             EEecchh-hhhHHHhhhhhhCCHHHHHHHHHcc--CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1347799 77 7999999999999888876543  2345677888888888764322 45667788888888888865

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.22  E-value=1.4e-10  Score=98.67  Aligned_cols=129  Identities=18%  Similarity=0.175  Sum_probs=88.8

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcchhhhccccC-CCCceE
Q psy13322         57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIA-NGFPMG  134 (195)
Q Consensus        57 aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi~~~sK~l~-~G~~~g  134 (195)
                      ++|++-...+.+|... +.+.+++|   + +++++||+||+|..|.  +..+... ....-.--+.+|||+++ .|+|+|
T Consensus       140 ~~i~i~nP~NPTG~~~-s~~~l~~l---~-~~~~~ii~DE~Y~~f~--~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG  212 (335)
T PRK14808        140 DVVFIPNPNNPTGHVF-EREEIERI---L-KTGAFVALDEAYYEFH--GESYVDLLKKYENLAVIRTFSKAFSLAAQRIG  212 (335)
T ss_pred             CEEEEeCCCCCCCCCc-CHHHHHHH---H-hcCCEEEEECchhhhc--CCchHHHHHhCCCEEEEEechhhccCcccceE
Confidence            4677777778889755 55556555   4 5899999999999873  3212111 11111111337799999 899999


Q ss_pred             EEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        135 AVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       135 ~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+++++++++.+....  ..++.+++++.++.++++..+. .+..+.++++++++.+.|++
T Consensus       213 ~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  271 (335)
T PRK14808        213 YVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALRE  271 (335)
T ss_pred             EEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999886543  2355677888888888875322 44556777778888888864

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.22  E-value=3e-11  Score=103.21  Aligned_cols=142  Identities=18%  Similarity=0.197  Sum_probs=96.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.      ++++|++-...+.+|. ..+.+.+++|.+.|++ +++||+||+|..|..... .  .......+.
T Consensus       136 ~~~l~~~~~------~~~lv~l~nPnNPTG~-~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~s-~--~~~~~~~~n  204 (351)
T PRK01688        136 LPAIADNLD------GVKVVYVCSPNNPTGN-LINPQDLRTLLELTRG-KAIVVADEAYIEFCPQAS-L--AGWLAEYPH  204 (351)
T ss_pred             HHHHHHhcc------CCcEEEEeCCCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCCC-h--HHHHhhCCC
Confidence            455555442      3446666677788996 5567788888888876 689999999988742111 1  111122344


Q ss_pred             h---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--c-chhHHHHHHHHHHHHHHHh
Q psy13322        120 I---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--K-DEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       120 i---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~-~~~~~~~l~~~~~~l~~~L  192 (195)
                      +   -+|||++| .|+|+||+++++++++.+.+...  .++.+.+++.++.++|+..  + -.+.++.++++++++.+.|
T Consensus       205 ~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~~--~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L  282 (351)
T PRK01688        205 LVILRTLSKAFALAGLRCGFTLANEEVINLLLKVIA--PYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAAL  282 (351)
T ss_pred             EEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhccC--CCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   37899999 89999999999999888876532  3455667777777887632  1 1345567778888888888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       283 ~~  284 (351)
T PRK01688        283 KE  284 (351)
T ss_pred             Hh
Confidence            65

>PRK08637 hypothetical protein; Provisional

Probab=99.22  E-value=3.4e-10  Score=97.95  Aligned_cols=153  Identities=16%  Similarity=0.082  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-----cCCEEEEeccccCccccCCCcccc-c
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS-----NNGLFISDEVQTGFGRTGDNYWGF-E  112 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~-----~~~llI~DEv~~g~gr~G~~~~~~-~  112 (195)
                      +++.+++.++.... ....++++-..++.+| ..++.+.+++|.++|++     |+++||+||+|.+|.+.+....+. .
T Consensus       131 d~~~l~~~~~~~~~-~~~~~~~~~~P~NPTG-~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~  208 (388)
T PRK08637        131 DTDALKEALQAAYN-KGKVIVILNFPNNPTG-YTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFA  208 (388)
T ss_pred             CHHHHHHHHHhhcc-CCCEEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHH
Confidence            36778777762211 2334556665688899 57788999999999875     999999999999886665422111 1


Q ss_pred             c-cCCCcch--h---hhccccC-CCCceEEEEec------HHHHHHhhccc----cccCCCchHHHHHHHHHHHHhhc--
Q psy13322        113 M-HGVSPDI--V---TMAKGIA-NGFPMGAVVTT------TEIAQVLTKAA----HFNTFGGNPVGCVIASTVLDVIK--  173 (195)
Q Consensus       113 ~-~~~~pdi--~---~~sK~l~-~G~~~g~v~~~------~~i~~~l~~~~----~~~t~~~~p~~~~aa~aal~~~~--  173 (195)
                      . .+..+++  +   ++||.++ .|+|+||++.+      +++++.+....    ....++.|.+++.++.++|+.-.  
T Consensus       209 ~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~  288 (388)
T PRK08637        209 ALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFD  288 (388)
T ss_pred             HhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHH
Confidence            1 1223342  2   5799988 89999999854      57777665321    11234668889999988885311  


Q ss_pred             c--hhHHHHHHHHHHHHHHHhh
Q psy13322        174 D--EELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       174 ~--~~~~~~l~~~~~~l~~~L~  193 (195)
                      +  ...+..++++.+.+.+.|+
T Consensus       289 ~~~~~~~~~~~~r~~~~~~~l~  310 (388)
T PRK08637        289 KEKQEKFQILKERYEKTKEVLY  310 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            1  2334456666666666553

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.21  E-value=4.3e-10  Score=96.24  Aligned_cols=147  Identities=14%  Similarity=0.090  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhcCCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPI--TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~--~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      +++|++.+.+....  .++++|++....++.|...+    +++|.++|++||+++|+||+|+ +|...   +....++..
T Consensus       122 ~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~---~~~~~~~~d  193 (361)
T cd06452         122 PEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRMP---VSGKELGAD  193 (361)
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCcC---CCHHHcCCC
Confidence            57777777642110  25678888877788887655    8999999999999999999997 43221   122223332


Q ss_pred             cchhhhccccCCCCceEEEEecHHHHHHhhccccc------cCCC--chHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHH
Q psy13322        118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHF------NTFG--GNPVGCVIASTVLDVIKD-EELQYNCKQVSAQI  188 (195)
Q Consensus       118 pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~------~t~~--~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l  188 (195)
                      -.+.+++|+++++.++|++++++++++.+......      ..++  .++..++++.++++.+.+ -+...+..++.++|
T Consensus       194 ~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l  273 (361)
T cd06452         194 FIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWF  273 (361)
T ss_pred             EEEecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23446679998666899999999988887553211      1111  122344555566654422 12223333445778


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|++
T Consensus       274 ~~~L~~  279 (361)
T cd06452         274 VAELEK  279 (361)
T ss_pred             HHHHhc
Confidence            887765

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PLN02672 methionine S-methyltransferase

Probab=99.21  E-value=1.4e-10  Score=110.48  Aligned_cols=151  Identities=9%  Similarity=0.136  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCc--cccc----c
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY--WGFE----M  113 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~--~~~~----~  113 (195)
                      ++.|++.+...   .+.+.++..|-++.+|. +++.+.+++|.++|++||++||+||+|.++-+.+...  +.+.    .
T Consensus       817 ~d~Le~al~~~---~~~~I~L~nPnhNPTG~-v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~  892 (1082)
T PLN02672        817 AKTLASTLETV---KKPWVYISGPTINPTGL-LYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSR  892 (1082)
T ss_pred             HHHHHHHhccC---CCCEEEEECcCCCCcCc-cCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHH
Confidence            46777777532   13346667775588895 7789999999999999999999999999887665421  1111    1


Q ss_pred             c-CCCc--chh---hhccccC-CCCceEEEEecH-HHHHHhhccccccC-CCchHHHHHHHHHHHHh----h-c-chhHH
Q psy13322        114 H-GVSP--DIV---TMAKGIA-NGFPMGAVVTTT-EIAQVLTKAAHFNT-FGGNPVGCVIASTVLDV----I-K-DEELQ  178 (195)
Q Consensus       114 ~-~~~p--di~---~~sK~l~-~G~~~g~v~~~~-~i~~~l~~~~~~~t-~~~~p~~~~aa~aal~~----~-~-~~~~~  178 (195)
                      + ...+  .++   +|||.++ +||++||+++++ ++++.+........ +..+..++.+++++++.    . + -.+.+
T Consensus       893 ~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r  972 (1082)
T PLN02672        893 LKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQK  972 (1082)
T ss_pred             hccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            1 1112  222   6799999 899999999965 48888765421111 22234444444444421    1 1 13456


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      +.++++++++.+.|++
T Consensus       973 ~~Lk~rRd~L~e~L~~  988 (1082)
T PLN02672        973 KILKSRAERLKETLEA  988 (1082)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6688899999888864

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.20  E-value=1.2e-10  Score=98.99  Aligned_cols=130  Identities=15%  Similarity=0.215  Sum_probs=88.1

Q ss_pred             EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CCCce
Q psy13322         58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NGFPM  133 (195)
Q Consensus        58 avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G~~~  133 (195)
                      +|++-..++.+|.+.+ .+.+++|.+.+  +++++|+||+|..|+  +......  ....+.   +-+|||.++ .|+++
T Consensus       147 ~v~~~~P~NPtG~~~~-~~~~~~l~~~~--~~~~livDe~y~~~~--~~~~~~~--~~~~~~~i~~~S~SK~~~~~GlR~  219 (353)
T PRK05387        147 GIIFPNPNAPTGIALP-LAEIERILAAN--PDSVVVIDEAYVDFG--GESAIPL--IDRYPNLLVVQTFSKSRSLAGLRV  219 (353)
T ss_pred             EEEEeCCCCCCCCCCC-HHHHHHHHHhC--CCcEEEEeCcccccC--CcchHHH--HhhCCCEEEEEehhHhhcchhhhc
Confidence            3455455788897655 45555555433  299999999998764  2211111  111222   236799999 89999


Q ss_pred             EEEEecHHHHHHhhccccc-cCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        134 GAVVTTTEIAQVLTKAAHF-NTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       134 g~v~~~~~i~~~l~~~~~~-~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ||+++++++++.+...... .+++.+++++.++.++|+..+ -++.+++++++++++.+.|++
T Consensus       220 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  282 (353)
T PRK05387        220 GFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEA  282 (353)
T ss_pred             eeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888765422 345678888888888886322 245677888889999888865

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.20  E-value=4.3e-10  Score=97.98  Aligned_cols=141  Identities=16%  Similarity=0.140  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIA-ESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aaviv-Epv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      ++++|++.+.+.    ++.+|++ .+..   |...+    +++|.++|++||+++|+||+|. +|..+.+... ...+ .
T Consensus       153 d~~~l~~~i~~~----~~k~v~~~~~~~---~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~-~~~~-~  218 (416)
T PRK00011        153 DYDEVEKLALEH----KPKLIIAGASAY---SRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHP-SPVP-H  218 (416)
T ss_pred             CHHHHHHHHHhc----CCCEEEECCCcC---CCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCccC-CCCC-C
Confidence            467888888643    3335555 4443   43333    8999999999999999999986 3333221111 1112 3


Q ss_pred             cchh--hhccccCCCCceEEEEec-HHHHHHhhccccccCCCc-hHHHHHHHHHHH-Hhhcc--hhHHHHHHHHHHHHHH
Q psy13322        118 PDIV--TMAKGIANGFPMGAVVTT-TEIAQVLTKAAHFNTFGG-NPVGCVIASTVL-DVIKD--EELQYNCKQVSAQIIG  190 (195)
Q Consensus       118 pdi~--~~sK~l~~G~~~g~v~~~-~~i~~~l~~~~~~~t~~~-~p~~~~aa~aal-~~~~~--~~~~~~l~~~~~~l~~  190 (195)
                      .|++  +++|++ +|+++|+++++ +++.+.+.......+++. ....+++...++ +.+++  ++..++++++++++++
T Consensus       219 ~di~~~S~~K~l-~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  297 (416)
T PRK00011        219 ADVVTTTTHKTL-RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAE  297 (416)
T ss_pred             CcEEEecCCcCC-CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            4655  557998 46788999996 688887765443333322 233344433343 43332  5678889999999999


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       298 ~L~~  301 (416)
T PRK00011        298 ALAE  301 (416)
T ss_pred             HHHh
Confidence            9875

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.18  E-value=6.7e-10  Score=94.49  Aligned_cols=141  Identities=16%  Similarity=0.165  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+++++.+.++    ++++|++..+.+.+|.+.+    +++|.++|++||+++++|++|+ +|..   ......+  ..|
T Consensus       113 ~~~l~~~i~~~----~~~~v~i~~~~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~g~~---~~~~~~~--~~d  178 (356)
T cd06451         113 PEEIAEALEQH----DIKAVTLTHNETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-LGGE---PFRMDEW--GVD  178 (356)
T ss_pred             HHHHHHHHhcc----CCCEEEEeccCCCcccccC----HHHHHHHHHhcCCEEEEeeehh-ccCc---ccccccc--Ccc
Confidence            67788877642    4557777677778998776    8899999999999999999987 5422   1122222  346


Q ss_pred             hhhh--ccccCCCCceEEEEecHHHHHHhhc--cc--c---------------ccCCCchHHHHHHHHHHHHhhcc---h
Q psy13322        120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTK--AA--H---------------FNTFGGNPVGCVIASTVLDVIKD---E  175 (195)
Q Consensus       120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~--~~--~---------------~~t~~~~p~~~~aa~aal~~~~~---~  175 (195)
                      +++.  +|.++++..+|+++.++++++.+..  ..  .               ..+.+.++..++++.++++.+..   +
T Consensus       179 ~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~  258 (356)
T cd06451         179 VAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLE  258 (356)
T ss_pred             EEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHH
Confidence            5544  5999965458999999988877653  11  0               11223456667777888887643   4


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      .+.++.+++.+++.+.|++
T Consensus       259 ~~~~~~~~~~~~l~~~L~~  277 (356)
T cd06451         259 NRWARHRRLAKALREGLEA  277 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5677888888999888864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.17  E-value=4.7e-10  Score=97.20  Aligned_cols=138  Identities=15%  Similarity=0.123  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+.     +++++|++..+.+.+|.+.+    +++|.++|+++|+++|+|++|+ +|..-   ....  .+..|
T Consensus       150 ~~~l~~~i~-----~~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~---~~~~--~~~~d  214 (401)
T PRK10874        150 VDLLPELIT-----PRTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP---ADVQ--ALDID  214 (401)
T ss_pred             HHHHHHhcC-----cCcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc---CCch--hcCCC
Confidence            577777664     25667888888899998887    8999999999999999999997 43221   1112  23467


Q ss_pred             hhhhc--cccC-CCCceEEEEecHHHHHHhhccccc--------------------cCC-CchHHHHHHHHHHHHhhcc-
Q psy13322        120 IVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAAHF--------------------NTF-GGNPVGCVIASTVLDVIKD-  174 (195)
Q Consensus       120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~~~--------------------~t~-~~~p~~~~aa~aal~~~~~-  174 (195)
                      +.++|  |.+| .|  +|++.+++++.+.+.....+                    +.. +.|..++++..++++.+.+ 
T Consensus       215 ~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~  292 (401)
T PRK10874        215 FYAFSGHKLYGPTG--IGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADI  292 (401)
T ss_pred             EEEEecccccCCCc--cEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHh
Confidence            76665  9777 45  58888999887766432100                    011 2344577777777776643 


Q ss_pred             --hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 --EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 --~~~~~~l~~~~~~l~~~L~~  194 (195)
                        ++..++.++.++++.+.|++
T Consensus       293 g~~~~~~~~~~l~~~l~~~l~~  314 (401)
T PRK10874        293 DINQAESWSRSLATLAEDALAK  314 (401)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhc
Confidence              45677888888888888865

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.17  E-value=2.2e-10  Score=97.35  Aligned_cols=127  Identities=19%  Similarity=0.209  Sum_probs=85.8

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch---hhhccccC-CCCc
Q psy13322         57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI---VTMAKGIA-NGFP  132 (195)
Q Consensus        57 aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi---~~~sK~l~-~G~~  132 (195)
                      .++++-..++.+|.... .   ++|.+++ ++++++|+||+|..|.  +......  ....+++   -+|||.++ .|+|
T Consensus       142 ~~v~~~~P~NPtG~~~~-~---~~l~~i~-~~~~~ii~De~y~~~~--~~~~~~~--~~~~~~vi~l~S~SK~~~l~GlR  212 (337)
T PRK03967        142 SAVFICSPNNPTGNLQP-E---EEILKVL-ETGKPVVLDEAYAEFS--GKSLIGL--IDEYPNLILLRTFSKAFGLAGIR  212 (337)
T ss_pred             CEEEEeCCCCCCCCCCC-H---HHHHHHH-hcCCEEEEECchhhhc--ccchHHH--HhhCCCEEEEecchHhhcchhhh
Confidence            34555555788997654 4   4455566 4799999999999873  2211111  1222333   37799999 9999


Q ss_pred             eEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        133 MGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       133 ~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +||+++++++++.+....  ..++.+.+++.++.++|+..+. .+.+..+.++++.+.+.|++
T Consensus       213 iG~iv~~~~~i~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  273 (337)
T PRK03967        213 AGYAIANEEIIDALYRIK--PPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGE  273 (337)
T ss_pred             heeeecCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999988887643  2345678899998888864322 33445666777778877754

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.16  E-value=8.3e-10  Score=97.85  Aligned_cols=141  Identities=11%  Similarity=0.080  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-C-C
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-G-V  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~-~  116 (195)
                      +.+.+++++.+..    . .|++-...+ .|...+    +++|+++|++||+++++|++|+ +|..|.+.. ...+ . -
T Consensus       208 D~d~l~~~~~~~~----p-lvii~g~S~-~~~~~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~-~~~~~~~~  275 (493)
T PRK13580        208 DYDEIAALAREFK----P-LILVAGYSA-YPRRVN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVF-TGDEDPVP  275 (493)
T ss_pred             CHHHHHHHHhhcC----C-EEEEeCccc-cCCCcC----HHHHHHHHHHcCCEEEEECchh-hceeccccc-hhhcCCCC
Confidence            3688888887542    2 233334333 344555    9999999999999999999998 665552121 1111 1 1


Q ss_pred             Ccchh--hhccccCCCCceEEEEecHHHHHHhhccccccCCC--chHHHHHHHHHHHHhhc-c--hhHHHHHHHHHHHHH
Q psy13322        117 SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFG--GNPVGCVIASTVLDVIK-D--EELQYNCKQVSAQII  189 (195)
Q Consensus       117 ~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~--~~p~~~~aa~aal~~~~-~--~~~~~~l~~~~~~l~  189 (195)
                      ..|++  |++|+|.|. ..|++++++++.+.+.... .+.++  .+| .++|+..++..+. .  .+.++++.+|.++|.
T Consensus       276 ~~D~vtgT~hKaL~GP-~GG~I~~~~~l~~~L~~a~-P~i~gg~l~p-~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La  352 (493)
T PRK13580        276 HADIVTTTTHKTLRGP-RGGLVLAKKEYADAVDKGC-PLVLGGPLPH-VMAAKAVALAEARTPEFQKYAQQVVDNARALA  352 (493)
T ss_pred             CCcEEEeCChhhccCC-CeEEEEecHHHHHHHhhCC-CcccCCCccH-HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            45655  557999531 2588999999988885332 33333  234 4444444555543 2  357899999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       353 ~~L~~  357 (493)
T PRK13580        353 EGFLK  357 (493)
T ss_pred             HHHHh
Confidence            98865

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.16  E-value=5.4e-10  Score=96.74  Aligned_cols=138  Identities=17%  Similarity=0.166  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     .++++|++..+.+.+|.+.+    +++|.++|++||+++++|++|+ +|..     ........+|
T Consensus       147 ~~~l~~~i~-----~~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~-----~~~~~~~~~d  211 (398)
T TIGR03392       147 IRQLPELLT-----PRTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG-----PPDVQALDID  211 (398)
T ss_pred             HHHHHHHhc-----cCceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC-----CCChhhcCCC
Confidence            567777664     25667888888889998877    8999999999999999999997 3321     1111123468


Q ss_pred             hhhhc--cccC-CCCceEEEEecHHHHHHhhccccc------------------cCC---CchHHHHHHHHHHHHhhcc-
Q psy13322        120 IVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAAHF------------------NTF---GGNPVGCVIASTVLDVIKD-  174 (195)
Q Consensus       120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~~~------------------~t~---~~~p~~~~aa~aal~~~~~-  174 (195)
                      +.++|  |.+| .|  +|++++++++.+.+.....+                  ..|   ..|..++++..++++.+.+ 
T Consensus       212 ~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~  289 (398)
T TIGR03392       212 FYAFSGHKLYGPTG--IGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDI  289 (398)
T ss_pred             EEEEecccccCCCc--eEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHh
Confidence            88888  9777 45  79999999887766432100                  011   2344577777777877643 


Q ss_pred             --hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 --EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 --~~~~~~l~~~~~~l~~~L~~  194 (195)
                        ++..++..+..+++.+.|++
T Consensus       290 g~~~i~~~~~~l~~~l~~~l~~  311 (398)
T TIGR03392       290 DIAAAEAWSVSLADLAEERLAQ  311 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhc
Confidence              45667788888888888764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.16  E-value=6.7e-10  Score=96.28  Aligned_cols=144  Identities=16%  Similarity=0.154  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH------cCCEEEEeccccCccccCCCcccccc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS------NNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~------~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      +++|++.+.     +++++|++....+..|. ..+.+.+++|.++|++      ||+++|.||+|..+.+.|......  
T Consensus       158 ~~~l~~~~~-----~~~~~v~~~~p~NPtG~-~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~--  229 (394)
T PRK06836        158 LDALEAAIT-----PKTKAVIINSPNNPTGV-VYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYI--  229 (394)
T ss_pred             HHHHHhhcC-----cCceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCCh--
Confidence            577777774     24567777777777885 5567889999999999      899999999999885544311111  


Q ss_pred             cCCCcchh---hhccccC-CCCceEEEEecHHHHHH---hhc---ccc-ccCCCchHHHHHHHHHHHHhhcchhHHHHHH
Q psy13322        114 HGVSPDIV---TMAKGIA-NGFPMGAVVTTTEIAQV---LTK---AAH-FNTFGGNPVGCVIASTVLDVIKDEELQYNCK  182 (195)
Q Consensus       114 ~~~~pdi~---~~sK~l~-~G~~~g~v~~~~~i~~~---l~~---~~~-~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~  182 (195)
                      ....++++   +|||.++ .|+++||+++++++.+.   ...   ... ....+.+++.+.++...++.   ....+.++
T Consensus       230 ~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~  306 (394)
T PRK06836        230 FKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDA---TVDVSIYK  306 (394)
T ss_pred             HHccCcEEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCC---hHHHHHHH
Confidence            11122333   6789999 89999999999876432   111   111 11234566777777666643   22356677


Q ss_pred             HHHHHHHHHhhc
Q psy13322        183 QVSAQIIGYLRV  194 (195)
Q Consensus       183 ~~~~~l~~~L~~  194 (195)
                      ++++.+.+.|++
T Consensus       307 ~~r~~l~~~L~~  318 (394)
T PRK06836        307 RNRDLLYDGLTE  318 (394)
T ss_pred             HHHHHHHHHHHh
Confidence            788888877754

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.16  E-value=4.1e-10  Score=98.22  Aligned_cols=136  Identities=16%  Similarity=0.141  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+.     .++++|++|.+.++.|.+..    +++|.++|+++|+++|+||+|+ .+....   +. ..|  .|
T Consensus       145 ~~~l~~ai~-----~~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~---~~-~~g--aD  208 (403)
T PRK07810        145 LSQWEEALS-----VPTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFA-TPLLQR---GL-PLG--AD  208 (403)
T ss_pred             HHHHHHhcC-----cCceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCC-ccccCC---hh-hcC--Cc
Confidence            566777665     25678999999999998886    9999999999999999999987 222221   11 123  47


Q ss_pred             hhhh--ccccCC-CCce-EEEEecHHHHH-HhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IVTM--AKGIAN-GFPM-GAVVTTTEIAQ-VLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~~~--sK~l~~-G~~~-g~v~~~~~i~~-~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++++  +|.+++ |..+ |+++++++... .+...........+|+.++.++..|+.+.  ..+++-.++...+.+.|+
T Consensus       209 ivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl~--~R~~~~~~~a~~~a~~L~  285 (403)
T PRK07810        209 VVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLA--LRVRHSNASALRIAEFLE  285 (403)
T ss_pred             EEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHh
Confidence            6655  599984 7665 77888876544 34322222233568888888888877663  344555555555555554

>PRK08354 putative aminotransferase; Provisional

Probab=99.15  E-value=8.9e-10  Score=92.62  Aligned_cols=115  Identities=15%  Similarity=0.197  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.|++.+++    .+ ..|+..| .+.+|. ..+.+.+++|.++|++||+++|+||+|.+|...+. .  .. ....--
T Consensus       108 ~~~l~~~~~~----~~-~vi~~~P-~NPTG~-~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~-~--~~-~~~vi~  176 (311)
T PRK08354        108 PEKLEELVER----NS-VVFFCNP-NNPDGK-FYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE-S--PE-GENIIK  176 (311)
T ss_pred             HHHHHHhhcC----CC-EEEEecC-CCCCCC-ccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc-c--cC-CCcEEE
Confidence            3556555441    13 3555556 678896 66788999999999999999999999998855432 1  11 111111


Q ss_pred             hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHH
Q psy13322        120 IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLD  170 (195)
Q Consensus       120 i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~  170 (195)
                      +-+|||+++ .|+|+||+++   +.+.+.....  .+..++.+++++.+.++
T Consensus       177 ~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~~--~~~~~~~~~~~~~~~~~  223 (311)
T PRK08354        177 LRTFTKSYGLPGIRVGYVKG---FEEAFRSVRM--PWSIGSTGYAFLEFLIE  223 (311)
T ss_pred             EeccHhhcCCccceeeeeee---hHHHHHHcCC--CccCCHHHHHHHHHHHH
Confidence            337799999 9999999998   4444544322  23334555555555544

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.15  E-value=1.3e-09  Score=93.10  Aligned_cols=142  Identities=11%  Similarity=0.086  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+.+.   .++..|.+--+.+.+|.+.+    +++|.++|++||+++|+|.+|+ +|...   ....  ...+|
T Consensus       117 ~~~l~~~l~~~---~~~~~v~~~~~~~~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g~~~---~~~~--~~~~D  183 (363)
T TIGR02326       117 VVEVEAILAAD---PAITHIALVHCETTTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FGGIP---IDIA--ELHID  183 (363)
T ss_pred             HHHHHHHHhhC---CCccEEEEEeecCCccccCc----HHHHHHHHHHcCCEEEEEcccc-ccCcc---cchh--hcCcc
Confidence            67888888754   23444555555667888877    8999999999999999999987 54321   1222  23467


Q ss_pred             hhhh--ccccCCCCceEEEEecHHHHHHhhccc------------------cccCCCchHHHHHHHHHHHHhhcc----h
Q psy13322        120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTKAA------------------HFNTFGGNPVGCVIASTVLDVIKD----E  175 (195)
Q Consensus       120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~------------------~~~t~~~~p~~~~aa~aal~~~~~----~  175 (195)
                      +++.  +|+++++..+|+++++++..+.+....                  ....|..++.++.+..++++.+.+    +
T Consensus       184 ~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~  263 (363)
T TIGR02326       184 YLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVA  263 (363)
T ss_pred             EEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHH
Confidence            6644  599974434799999988776543210                  012345577788888888877633    3


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      +..++++++.+++++.|++
T Consensus       264 ~~~~~~~~~~~~l~~~L~~  282 (363)
T TIGR02326       264 ARHQRYQQNQKTLVAGMRA  282 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5678899999999998864

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.15  E-value=6.7e-10  Score=95.91  Aligned_cols=138  Identities=13%  Similarity=0.090  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     +++.+|+++.+.+++|.+.+    +++|.++|++||+++|+||+|. .|. +  .....  ...+|
T Consensus       146 ~~~l~~~i~-----~~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~-~--~~~~~--~~~~d  210 (397)
T TIGR01976       146 PDDLASLLS-----PRTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-APH-G--LIDVQ--ATGAD  210 (397)
T ss_pred             HHHHHHhcC-----CCceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-ccc-c--CCCHH--HcCCC
Confidence            566776664     35678999999999999876    9999999999999999999986 321 1  11122  23457


Q ss_pred             hhhh--ccccCCCCceEEEEecHHHHHHhhccccccCC----------CchHHHHHHHHHHHHhhcc-------------
Q psy13322        120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTKAAHFNTF----------GGNPVGCVIASTVLDVIKD-------------  174 (195)
Q Consensus       120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~----------~~~p~~~~aa~aal~~~~~-------------  174 (195)
                      ++++  +|.+|  +++|++++++++++.+........+          ..+...+++..++++.+.+             
T Consensus       211 ~~~~s~~K~~g--~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~  288 (397)
T TIGR01976       211 FLTCSAYKFFG--PHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERL  288 (397)
T ss_pred             EEEEechhhcC--CceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhh
Confidence            6644  69874  5689999999988777643211111          1234455556666665532             


Q ss_pred             ----hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 ----EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ----~~~~~~l~~~~~~l~~~L~~  194 (195)
                          +...++..+..+++++.|++
T Consensus       289 ~~~~~~~~~~~~~l~~~l~~~L~~  312 (397)
T TIGR01976       289 VASFQAIDAYENRLAEYLLVGLSD  312 (397)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhc
Confidence                22345566777788777764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.15  E-value=7.3e-10  Score=95.87  Aligned_cols=135  Identities=13%  Similarity=0.060  Sum_probs=92.1

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI  120 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi  120 (195)
                      +.+++.+.     .++++|++|.+.++.|.+.+    +++|.++|++||+++|+||+|+ .|....   ..   ....|+
T Consensus       126 e~l~~~i~-----~~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a-~g~~~~---pl---~~gaDi  189 (377)
T TIGR01324       126 EDIATLIQ-----PNTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWA-AGLLFK---PL---EHGVDI  189 (377)
T ss_pred             HHHHHhcC-----CCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc-cccccC---cc---ccCceE
Confidence            45555543     36779999999998887776    9999999999999999999997 443332   11   234576


Q ss_pred             hhh--ccccCC--CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        121 VTM--AKGIAN--GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       121 ~~~--sK~l~~--G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++.  +|.++|  +..+|+++++++..+.+...........+|..+...+..++.+.  -.+++.+++...+.+.|+
T Consensus       190 vv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~--~R~~~~~~~a~~la~~L~  264 (377)
T TIGR01324       190 SIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLG--VRLKQHQESSLAIAKWLS  264 (377)
T ss_pred             EEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHH
Confidence            655  699984  35678888888877766543333344557777777766666542  234555666555655554

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.14  E-value=7.5e-10  Score=96.45  Aligned_cols=136  Identities=13%  Similarity=0.105  Sum_probs=95.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--CCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--NGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      ++++++.+.     +++++|++|.+.++.|.+..    +++|.++|++|  |+++|+||+|+.. ..+. .  .   +..
T Consensus       139 ~e~l~~~i~-----~~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~~-~~~~-~--l---~~g  202 (400)
T PRK06234        139 LEEVRNALK-----ANTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCTP-YIQR-P--L---QLG  202 (400)
T ss_pred             HHHHHHHhc-----cCCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCch-hcCC-c--h---hhC
Confidence            567777665     25678999999999998777    99999999997  9999999998732 2222 1  1   223


Q ss_pred             cchh--hhccccC-CCCc-eEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy13322        118 PDIV--TMAKGIA-NGFP-MGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGY  191 (195)
Q Consensus       118 pdi~--~~sK~l~-~G~~-~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~  191 (195)
                      .|++  +++|.++ .|++ +|++++++++++.++...  ...+...+|+.++.++..|+.+.  ..+++..++..++.+.
T Consensus       203 ~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl~--~r~~~~~~na~~~a~~  280 (400)
T PRK06234        203 ADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTLQ--IRMEKHCKNAMKVAKF  280 (400)
T ss_pred             CcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHH
Confidence            4655  4569998 4776 488999998888776432  22345567888877777776543  3455566677777766


Q ss_pred             hh
Q psy13322        192 LR  193 (195)
Q Consensus       192 L~  193 (195)
                      |+
T Consensus       281 L~  282 (400)
T PRK06234        281 LE  282 (400)
T ss_pred             HH
Confidence            65

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.14  E-value=8.7e-10  Score=94.38  Aligned_cols=139  Identities=13%  Similarity=0.143  Sum_probs=97.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|++..+.++.|...+    +++|.++|++||++|++|++|+ +|...   +...  ...+|
T Consensus       129 ~~~l~~~l~-----~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~~---~~~~--~~~~d  193 (373)
T cd06453         129 LEALEKLLT-----ERTKLVAVTHVSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHMP---VDVQ--DLGCD  193 (373)
T ss_pred             HHHHHHHhc-----CCceEEEEeCcccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCcee---eecc--ccCCC
Confidence            677887775     25678888888888998876    8999999999999999999987 33221   1111  34568


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhccccc--------------------c-CCCchHHHHHHHHHHHHhhcc--
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHF--------------------N-TFGGNPVGCVIASTVLDVIKD--  174 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~--------------------~-t~~~~p~~~~aa~aal~~~~~--  174 (195)
                      ++++|  |.+++ ..+|++++++++.+.+.....+                    + ..+.+..++.+..++++.+.+  
T Consensus       194 ~~~~s~~K~~~~-~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g  272 (373)
T cd06453         194 FLAFSGHKMLGP-TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIG  272 (373)
T ss_pred             EEEeccccccCC-CCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcC
Confidence            88887  99985 4478999999887766543110                    0 012344556666667776643  


Q ss_pred             -hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 -EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 -~~~~~~l~~~~~~l~~~L~~  194 (195)
                       +.+.++.+++.+++.+.|++
T Consensus       273 ~~~~~~~~~~~~~~l~~~l~~  293 (373)
T cd06453         273 MEAIAAHEHELTAYALERLSE  293 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence             45677888888888888765

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR01814 kynureninase kynureninase

Probab=99.13  E-value=1.7e-09  Score=94.11  Aligned_cols=142  Identities=13%  Similarity=0.098  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.++...  +++++|+++.+.+++|.+.+    +++|.++|++||+++++|++|+ +|...   +....  ...|
T Consensus       158 ~~~l~~~~~~~~--~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~~---id~~~--~gvD  225 (406)
T TIGR01814       158 LEDILDTIEKNG--DDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNVP---LDLHD--WGVD  225 (406)
T ss_pred             HHHHHHHHHhcC--CCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCcc---ccccc--CCCC
Confidence            567777776442  47889999999999999998    9999999999999999999998 54321   12232  3456


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhcccc---c----------cC---------CC-chHHHHHHHHHHHHhhcc
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAH---F----------NT---------FG-GNPVGCVIASTVLDVIKD  174 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~---~----------~t---------~~-~~p~~~~aa~aal~~~~~  174 (195)
                      ++++|  |.|++|. .+++...++..+.+.....   +          .+         .+ .|..++++..++|+.+.+
T Consensus       226 ~~~~s~hK~l~g~p-G~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~  304 (406)
T TIGR01814       226 FACWCTYKYLNAGP-GAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQ  304 (406)
T ss_pred             EEEEcCccccCCCC-CeEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHh
Confidence            66554  9997653 3444443332222322100   0          00         12 355677778889988744


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 ---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ---~~~~~~l~~~~~~l~~~L~~  194 (195)
                         +...++.+++.+++++.|++
T Consensus       305 ~g~~~i~~~~~~l~~~l~~~l~~  327 (406)
T TIGR01814       305 AGMEALRKKSLLLTDYLEELIKA  327 (406)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHh
Confidence               56778888888898888754

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.13  E-value=1.3e-09  Score=94.26  Aligned_cols=140  Identities=16%  Similarity=0.138  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCccccCCCcccccccCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALI-AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ-TGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavi-vEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~-~g~gr~G~~~~~~~~~~~  116 (195)
                      +++++++.+.+.    +..+|+ ..+..   |....    +++|.++|++||+++|+||+| .|+...|. .. . ... 
T Consensus       149 d~~~l~~~i~~~----~~~~v~~~~~~~---~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~-~~-~-~~~-  213 (402)
T cd00378         149 DYDALEKMALEF----KPKLIVAGASAY---PRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGV-FP-N-PLP-  213 (402)
T ss_pred             CHHHHHHHHHhC----CCCEEEecCccc---CCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhccc-CC-C-ccc-
Confidence            367888887643    223444 45544   33333    889999999999999999997 44422332 11 1 111 


Q ss_pred             Ccchh--hhccccCCCCceEEEEecH-HHHHHhhccccccCCCc-hHHHHHHHHHHHHhh-c-c-hhHHHHHHHHHHHHH
Q psy13322        117 SPDIV--TMAKGIANGFPMGAVVTTT-EIAQVLTKAAHFNTFGG-NPVGCVIASTVLDVI-K-D-EELQYNCKQVSAQII  189 (195)
Q Consensus       117 ~pdi~--~~sK~l~~G~~~g~v~~~~-~i~~~l~~~~~~~t~~~-~p~~~~aa~aal~~~-~-~-~~~~~~l~~~~~~l~  189 (195)
                      ..|++  +++|++ +|+++|++++++ ++++.+......+.++. ++..++++..++... . . ++.+++++++.+++.
T Consensus       214 ~~dv~~~s~sK~l-~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  292 (402)
T cd00378         214 GADVVTTTTHKTL-RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALA  292 (402)
T ss_pred             CCcEEEeccccCC-CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            34654  567999 578899999987 88888765433233332 233333434444433 2 1 567788999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       293 ~~L~~  297 (402)
T cd00378         293 EALKE  297 (402)
T ss_pred             HHHHh
Confidence            98865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.13  E-value=6.4e-10  Score=96.44  Aligned_cols=137  Identities=15%  Similarity=0.058  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     ++.++|++|.+.++.|.+.+    +++|.++|+++|+++|+||+|+ .+..+.   .. ..|  .|
T Consensus       136 ~~~l~~~i~-----~~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~---pl-~~g--~D  199 (386)
T PRK06767        136 EADIENKIR-----PNTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFC-SPYLQR---PL-ELG--CD  199 (386)
T ss_pred             HHHHHHhhC-----cCceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCc-ccccCC---ch-hcC--Cc
Confidence            456666554     25678999999999998777    8999999999999999999986 222222   11 123  36


Q ss_pred             hh--hhccccCC-CCc-eEEEEecHHHHHHhhccccc-cCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IV--TMAKGIAN-GFP-MGAVVTTTEIAQVLTKAAHF-NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~--~~sK~l~~-G~~-~g~v~~~~~i~~~l~~~~~~-~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++  +++|.+++ |.+ +|+++++++.++.+...... .....+|+.+++++..|+.+  +..+++.+++.+++.+.|++
T Consensus       200 iv~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl--~~r~~~~~~~a~~la~~L~~  277 (386)
T PRK06767        200 AVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTL--AVRMDRHCDNAEKIVSFLKN  277 (386)
T ss_pred             EEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHHc
Confidence            55  45699984 677 48888988866654332211 11123677666665555544  34567778888888888875

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.13  E-value=9.2e-10  Score=95.65  Aligned_cols=137  Identities=13%  Similarity=0.071  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     .++++|++|.+.++.|.+.+    +++|.++|+++|+++|+||++. .+..+. .     .+...|
T Consensus       134 ~e~l~~~i~-----~~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a-~~~~~~-~-----~~~g~D  197 (391)
T TIGR01328       134 PEEVKAHIK-----DNTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFA-TPMLTN-P-----VALGVD  197 (391)
T ss_pred             HHHHHHhhc-----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCc-hhccCC-c-----hhcCCC
Confidence            566666654     35779999999999998776    9999999999999999999987 333332 1     123346


Q ss_pred             hh--hhccccCC-CCc-eEEEEecHHHHHHhhcccc--ccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IV--TMAKGIAN-GFP-MGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~--~~sK~l~~-G~~-~g~v~~~~~i~~~l~~~~~--~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++  +++|.+++ |.+ +|++++++++++.++....  ......+|+.++.++..|+.+  +..+++..++.+++.+.|+
T Consensus       198 ivv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl--~~r~~~~~~na~~la~~L~  275 (391)
T TIGR01328       198 VVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL--NIRMKRHSENAMKVAEYLK  275 (391)
T ss_pred             EEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHHHH
Confidence            55  45699984 655 5778888888877764321  122345677777666666544  3346667777777777775


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       276 ~  276 (391)
T TIGR01328       276 S  276 (391)
T ss_pred             h
Confidence            4

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.12  E-value=8.5e-10  Score=94.91  Aligned_cols=138  Identities=20%  Similarity=0.151  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .+...|+++.+.+++|.+.+    +++|.++|+++|+++++|++|+ +|....   ....+  ..|
T Consensus       128 ~~~l~~~l~-----~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~~---~~~~~--~~d  192 (381)
T PRK02948        128 LVDLERAIT-----PDTVLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLPI---DVFEM--GID  192 (381)
T ss_pred             HHHHHHhcC-----CCCEEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-cccccc---CcccC--CCC
Confidence            566776664     25568999999999999887    8899999999999999999887 654321   12223  345


Q ss_pred             hh--hhccccC-CCCceEEEEecHHHH-HHhhcc---ccc-cCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Q psy13322        120 IV--TMAKGIA-NGFPMGAVVTTTEIA-QVLTKA---AHF-NTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQII  189 (195)
Q Consensus       120 i~--~~sK~l~-~G~~~g~v~~~~~i~-~~l~~~---~~~-~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~  189 (195)
                      ++  +++|.+| .|  +|++++++++. ..+...   ... ..++.|+.+++++.++++.+.+  ++..+++++++++|+
T Consensus       193 ~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~  270 (381)
T PRK02948        193 SLSVSAHKIYGPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFL  270 (381)
T ss_pred             EEEecHHhcCCCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54  5579887 45  68887776541 111100   011 1234678888888999987532  567889999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       271 ~~L~~  275 (381)
T PRK02948        271 EQIQT  275 (381)
T ss_pred             HHHhc
Confidence            99875

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.11  E-value=7.5e-10  Score=96.40  Aligned_cols=136  Identities=13%  Similarity=0.096  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+.     .++++|++|.+.++.|.+.+    +++|.++|+++|+++|+||+|+. +.... .  .   ....|
T Consensus       140 ~e~l~~ai~-----~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~-~~~~~-~--~---~~gaD  203 (398)
T PRK07504        140 LDNWEKAVR-----PNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFAT-PLFQK-P--L---ELGAH  203 (398)
T ss_pred             HHHHHHhcC-----cCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCccc-cccCC-c--h---hhCCC
Confidence            466666654     36779999999999998887    99999999999999999999972 22221 1  1   12346


Q ss_pred             hhhh--ccccC-CCCceE-EEEecHHHHH-HhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IVTM--AKGIA-NGFPMG-AVVTTTEIAQ-VLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~~~--sK~l~-~G~~~g-~v~~~~~i~~-~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++++  +|.++ .|+++| +++++++++. .+...........+|+.++.++..|+.+.  ..+++..++...+.+.|+
T Consensus       204 ivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl~--~R~~~~~~na~~la~~L~  280 (398)
T PRK07504        204 IVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETLP--VRVRQQTESAAAIADFLA  280 (398)
T ss_pred             EEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHH
Confidence            6654  69998 578775 6667766553 33322222233467888888888887763  344555566666666665

>KOG0259|consensus

Probab=99.11  E-value=1.7e-09  Score=91.70  Aligned_cols=151  Identities=13%  Similarity=0.070  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CC
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GV  116 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~  116 (195)
                      .+++.+|.++.+    ..+|.||+.|-.- -| .+++.+-|++|+++|+|+++++|+||||..+-+.++.|.+...+ .+
T Consensus       187 IDL~~veal~DE----NT~AivviNP~NP-cG-nVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssi  260 (447)
T KOG0259|consen  187 IDLDGVEALADE----NTVAIVVINPNNP-CG-NVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSI  260 (447)
T ss_pred             echHHHHHhhcc----CeeEEEEeCCCCC-Cc-ccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhcccc
Confidence            568888888774    3788888888543 34 47889999999999999999999999999886666644444333 34


Q ss_pred             Ccchh--hhccccC-CCCceEEEEecHH--HH------HHhhccccccCCCchHHHHHHHHHHHHhhcc---hhHHHHHH
Q psy13322        117 SPDIV--TMAKGIA-NGFPMGAVVTTTE--IA------QVLTKAAHFNTFGGNPVGCVIASTVLDVIKD---EELQYNCK  182 (195)
Q Consensus       117 ~pdi~--~~sK~l~-~G~~~g~v~~~~~--i~------~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~  182 (195)
                      .|-|.  .+||.+= .|||+||++..+.  +.      +.+.+. ...+.+.+.+-|+|.=.-|+.-.+   +....-++
T Consensus       261 VPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~-~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk  339 (447)
T KOG0259|consen  261 VPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNF-LDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLK  339 (447)
T ss_pred             CceEeecccccccccCCceeeeEEEecccccccchHHHHHHHHH-HhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHH
Confidence            55433  4479887 8999999988642  21      222222 234456667777776666665433   45667789


Q ss_pred             HHHHHHHHHhhcC
Q psy13322        183 QVSAQIIGYLRVV  195 (195)
Q Consensus       183 ~~~~~l~~~L~~l  195 (195)
                      .+.+...+.|+.+
T Consensus       340 ~na~l~y~~Lk~I  352 (447)
T KOG0259|consen  340 SNADLCYSRLKDI  352 (447)
T ss_pred             hhHHHHHHHHhcC
Confidence            9999999988764

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.10  E-value=1.4e-09  Score=94.72  Aligned_cols=137  Identities=15%  Similarity=0.138  Sum_probs=96.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.|.     .++++|++|.+.++.|.+.+    +++|.++|++||+++|+|++|+.. ....   ..   ....|
T Consensus       139 ~e~l~~~i~-----~~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~-~~~~---~l---~~~~D  202 (398)
T PRK08249        139 HEQIEAEIA-----KGCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFATP-INQN---PL---ALGAD  202 (398)
T ss_pred             HHHHHHhcC-----CCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC---ch---hhCCC
Confidence            566777664     25678999999999998887    999999999999999999998732 2221   11   22345


Q ss_pred             hh--hhccccCC-CCc-eEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IV--TMAKGIAN-GFP-MGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~--~~sK~l~~-G~~-~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++  +++|.+++ |-. .|++++++++++.+...........+|+.++.++..++.+.  ..+++..++.+.+.+.|++
T Consensus       203 ivv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL~--~R~~~~~~na~~la~~L~~  279 (398)
T PRK08249        203 LVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTLK--LRVRQQQESAMALAKYLQT  279 (398)
T ss_pred             EEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchHH--HHHHHHHHHHHHHHHHHHc
Confidence            54  55799984 444 46777888888877654433445667888888777777663  3456667777777777753

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.10  E-value=6.8e-10  Score=94.60  Aligned_cols=138  Identities=14%  Similarity=0.185  Sum_probs=95.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|++..+.+++|.+.+    +++|.++|++||+++++|++|+ +|..-   ....  ....|
T Consensus       128 ~~~l~~~l~-----~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~~---~~~~--~~~~D  192 (353)
T TIGR03235       128 VDELADAIR-----PDTLLVSIMHVNNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKIT---VDLS--ADRID  192 (353)
T ss_pred             HHHHHHhCC-----CCCEEEEEEcccCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCcc---cccc--ccCCC
Confidence            567777664     25678989999999999887    8999999999999999999998 54321   1122  23468


Q ss_pred             hhhhc--cccC-CCCceEEEEecHHHHHH--hhcccc-------ccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHH
Q psy13322        120 IVTMA--KGIA-NGFPMGAVVTTTEIAQV--LTKAAH-------FNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVS  185 (195)
Q Consensus       120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~--l~~~~~-------~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~  185 (195)
                      ++++|  |.++ .|  +|+++++++....  +.....       ......++...++..++++.+.+  ++..++++++.
T Consensus       193 ~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~  270 (353)
T TIGR03235       193 LISCSGHKIYGPKG--IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMR  270 (353)
T ss_pred             EEEeehhhcCCCCc--eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            87776  9765 34  7888888764221  111101       11223456677777788887643  56778899999


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      +++++.|++
T Consensus       271 ~~l~~~l~~  279 (353)
T TIGR03235       271 NQLRDALQT  279 (353)
T ss_pred             HHHHHHhcc
Confidence            999998864

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.10  E-value=1.9e-09  Score=92.06  Aligned_cols=145  Identities=12%  Similarity=0.141  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc-cCCCc--ccccccC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR-TGDNY--WGFEMHG  115 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr-~G~~~--~~~~~~~  115 (195)
                      ++++|++.|.+     +.++|++-...+++|.+.+    +++|.++|++||+++++||+|+++.. .+...  +.+..  
T Consensus       140 d~~~l~~~i~~-----~~~~vi~~~~~~~tG~~~~----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~--  208 (371)
T PRK13520        140 DVKAVEDLIDD-----NTIGIVGIAGTTELGQVDP----IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSL--  208 (371)
T ss_pred             CHHHHHHHHhh-----CCEEEEEEcCCcCCcccCC----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccC--
Confidence            36888888863     3334443333467898877    99999999999999999999986531 11111  11111  


Q ss_pred             CCcchhhhc-cccC-CCCceEEEEe-cHHHHHHhhccc-ccc-------CCCchHHHHHHHHHHHHhhcc---hhHHHHH
Q psy13322        116 VSPDIVTMA-KGIA-NGFPMGAVVT-TTEIAQVLTKAA-HFN-------TFGGNPVGCVIASTVLDVIKD---EELQYNC  181 (195)
Q Consensus       116 ~~pdi~~~s-K~l~-~G~~~g~v~~-~~~i~~~l~~~~-~~~-------t~~~~p~~~~aa~aal~~~~~---~~~~~~l  181 (195)
                      ...|.+++| +.++ +|+|+|+++. ++++.+.+.... +..       ....++..++++.++|+.+.+   +++.++.
T Consensus       209 ~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~  288 (371)
T PRK13520        209 PGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERC  288 (371)
T ss_pred             CCCceEEECCccccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHH
Confidence            123544443 3354 5678887775 555766654211 100       001134567788888887644   3577889


Q ss_pred             HHHHHHHHHHhhc
Q psy13322        182 KQVSAQIIGYLRV  194 (195)
Q Consensus       182 ~~~~~~l~~~L~~  194 (195)
                      .+++++|.+.|++
T Consensus       289 ~~~~~~l~~~L~~  301 (371)
T PRK13520        289 MENTRWLAEELKE  301 (371)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.09  E-value=1.2e-09  Score=96.03  Aligned_cols=153  Identities=12%  Similarity=0.052  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc--ccc-----CCCcccc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF--GRT-----GDNYWGF  111 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~--gr~-----G~~~~~~  111 (195)
                      ++++|++.|.+... .++++|+++...+..|-.+.+.+.|++|.++|++||++||+|+++.-.  .+.     |....+.
T Consensus       137 D~e~Le~~I~~~~~-~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si  215 (431)
T cd00617         137 DVAKLEKLIDEVGA-ENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSI  215 (431)
T ss_pred             CHHHHHHHhCcccC-CCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCH
Confidence            37889999875422 368888888665555346778899999999999999999999997521  011     1100011


Q ss_pred             cccCCCcchhhhccccC-CCCc------eEEEEecH-HHHHHhhccc----cccCCCc-hHHHHHHHHHHHHhhcchhHH
Q psy13322        112 EMHGVSPDIVTMAKGIA-NGFP------MGAVVTTT-EIAQVLTKAA----HFNTFGG-NPVGCVIASTVLDVIKDEELQ  178 (195)
Q Consensus       112 ~~~~~~pdi~~~sK~l~-~G~~------~g~v~~~~-~i~~~l~~~~----~~~t~~~-~p~~~~aa~aal~~~~~~~~~  178 (195)
                      .  .+.-.+..+||++. +||+      +|++++++ ++++.+++..    ...++++ +...++|...+|+...+.+..
T Consensus       216 ~--ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l  293 (431)
T cd00617         216 A--EIAREMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYL  293 (431)
T ss_pred             H--HHHHHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHH
Confidence            0  11112334567776 6665      56888886 5888876532    1223343 344444443377654233334


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++..+++++|.+.|++
T Consensus       294 ~~~~~~r~~l~~~L~~  309 (431)
T cd00617         294 RHRVEQVRYLGDRLDE  309 (431)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4434455888888875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.09  E-value=7e-10  Score=96.39  Aligned_cols=138  Identities=14%  Similarity=0.160  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     .++++|++..+.+.+|.+.+    +++|.++|++||+++++|++|+ +|...     +...+..+|
T Consensus       132 ~~~l~~~l~-----~~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~~-----~~~~~~~~D  196 (402)
T TIGR02006       132 LEELKAAIR-----DDTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKIP-----INVNELKVD  196 (402)
T ss_pred             HHHHHHhcC-----CCCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCcc-----cCccccCCC
Confidence            566776664     25678999999999998877    9999999999999999999997 44321     222245678


Q ss_pred             hhhhc--cccC-CCCceEEEEecHHHHHHhhccccc------cC-CCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH
Q psy13322        120 IVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAAHF------NT-FGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQ  187 (195)
Q Consensus       120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~~~------~t-~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~  187 (195)
                      ++++|  |.+| .|  +|+++.+++....+.....+      .. ...+...+++..++++.+.+  +...++.+++.++
T Consensus       197 ~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~  274 (402)
T TIGR02006       197 LMSISGHKIYGPKG--IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDR  274 (402)
T ss_pred             EEEEehhhhcCCCc--eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99888  9776 24  78888776533322222111      11 12355566666688887643  4556788888888


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      +++.|++
T Consensus       275 l~~~l~~  281 (402)
T TIGR02006       275 LLNGIKS  281 (402)
T ss_pred             HHHHHhc
Confidence            8888864

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.09  E-value=2.5e-09  Score=92.91  Aligned_cols=138  Identities=14%  Similarity=0.143  Sum_probs=98.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|++..+.+..|.+.+    +++|.++|+++|+++++|++|+ +|...   ....  ....|
T Consensus       154 ~~~l~~~i~-----~~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~---~~~~--~~~~D  218 (406)
T PRK09295        154 LETLPALFD-----ERTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHHP---VDVQ--ALDCD  218 (406)
T ss_pred             HHHHHHhcC-----CCcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCccc---cCch--hcCCC
Confidence            566666664     25678888889899999887    8999999999999999999997 54321   1122  23567


Q ss_pred             hhhhc--cccC-CCCceEEEEecHHHHHHhhccccc----------------------cCCCchHHHHHHHHHHHHhhcc
Q psy13322        120 IVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAAHF----------------------NTFGGNPVGCVIASTVLDVIKD  174 (195)
Q Consensus       120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~~~----------------------~t~~~~p~~~~aa~aal~~~~~  174 (195)
                      ++++|  |.+| .|  +|++++++++++.+.....+                      .+-..|..++++..++++.+.+
T Consensus       219 ~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~  296 (406)
T PRK09295        219 FYVFSGHKLYGPTG--IGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSA  296 (406)
T ss_pred             EEEeehhhccCCCC--cEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHH
Confidence            77775  9776 45  78999998887665321100                      0013466788888899988754


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 ---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ---~~~~~~l~~~~~~l~~~L~~  194 (195)
                         +...++.++..+++.+.|++
T Consensus       297 ~g~~~i~~~~~~l~~~l~~~l~~  319 (406)
T PRK09295        297 LGLNNIAEYEQNLMHYALSQLES  319 (406)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHhc
Confidence               46678888888999888865

>PRK10534 L-threonine aldolase; Provisional

Probab=99.09  E-value=6.4e-10  Score=93.95  Aligned_cols=144  Identities=15%  Similarity=0.191  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc---CCCcccccccC
Q psy13322         40 YEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT---GDNYWGFEMHG  115 (195)
Q Consensus        40 ~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~---G~~~~~~~~~~  115 (195)
                      +++|++.+.+.. +..++.+|+++...  .|.+. +.+.+++|.++|++|+++|++||+|. ++..   +.   ......
T Consensus       113 ~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~-~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~---~~~~~~  185 (333)
T PRK10534        113 LDKVAAKIKPDDIHFARTRLLSLENTH--NGKVL-PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGC---ELKEIT  185 (333)
T ss_pred             HHHHHHhhcccCcCcccceEEEEecCC--CCeec-CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCC---CHHHHH
Confidence            567777664310 00146678888644  47644 67889999999999999999999987 4321   22   111111


Q ss_pred             CCcc--hhhhccccCCCCceE-EEEecHHHHHHhhccccccC--CCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q psy13322        116 VSPD--IVTMAKGIANGFPMG-AVVTTTEIAQVLTKAAHFNT--FGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIG  190 (195)
Q Consensus       116 ~~pd--i~~~sK~l~~G~~~g-~v~~~~~i~~~l~~~~~~~t--~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~  190 (195)
                      -.+|  +++|||+++.  ++| ++++++++++.+........  +..+.++++++.++|+..  .+.+++.+++++++.+
T Consensus       186 ~~~~~~~~s~SK~~~~--~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~  261 (333)
T PRK10534        186 QYCDSFTICLSKGLGT--PVGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAE  261 (333)
T ss_pred             hcCCEEEEEeEcCCCC--cccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHH
Confidence            1122  4578998873  356 68889999888865432222  223456677777777532  2334445566788888


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       262 ~L~~  265 (333)
T PRK10534        262 QLRE  265 (333)
T ss_pred             HHHh
Confidence            8865

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.08  E-value=2.5e-09  Score=94.50  Aligned_cols=141  Identities=15%  Similarity=0.114  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIA-ESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aaviv-Epv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      ++++|++++++..+  ++  |++ ++   ..|...+    +++|.++|+++|+++++|++|+ +|..+....... .. .
T Consensus       170 d~~~L~~~l~~~~~--~l--vi~~~s---~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~-~~-~  235 (452)
T PTZ00094        170 DYDKLEELAKAFRP--KL--IIAGAS---AYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSP-FP-Y  235 (452)
T ss_pred             CHHHHHHHHHHhCC--CE--EEEeCC---CCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCC-CC-C
Confidence            47889998875432  33  333 44   4555555    8899999999999999999998 666543221111 11 4


Q ss_pred             cchhhhc--cccCCCCceEEEEecHHHHHHhhcc----ccccCC-CchHHHHHHHHHHHHhhcc---hhHHHHHHHHHHH
Q psy13322        118 PDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKA----AHFNTF-GGNPVGCVIASTVLDVIKD---EELQYNCKQVSAQ  187 (195)
Q Consensus       118 pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~----~~~~t~-~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~  187 (195)
                      .|++++|  |+|.|-. .|++.+++++.+.+...    .+.... +.++..+++..++++.+..   ++..+++.++.++
T Consensus       236 ~D~l~~S~hK~l~GP~-Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~  314 (452)
T PTZ00094        236 ADVVTTTTHKSLRGPR-SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKA  314 (452)
T ss_pred             CcEEEcCCccCCCCCC-ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence            6887775  9996422 36677766554433222    111111 4467788888899998843   4577899999999


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      |.+.|++
T Consensus       315 l~~~L~~  321 (452)
T PTZ00094        315 LAAALEK  321 (452)
T ss_pred             HHHHHHh
Confidence            9998864

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.08  E-value=3.7e-10  Score=96.47  Aligned_cols=132  Identities=16%  Similarity=0.180  Sum_probs=90.0

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G  130 (195)
                      ++++|++....+.+|.+. +.+.+++|.+.|+  +++||+||+|..|..... ....  ....+.   +-+|||.++ .|
T Consensus       147 ~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~--~~~vivDeay~~~~~~~s-~~~~--~~~~~~~iv~~S~SK~~~l~G  220 (354)
T PRK04635        147 GAKLVFICNPNNPTGTVI-DRADIEQLIEMTP--DAIVVVDEAYIEFCPEYS-VADL--LASYPNLVVLRTLSKAFALAG  220 (354)
T ss_pred             CCCEEEEeCCCCCCCccC-CHHHHHHHHHhCC--CcEEEEeCchHhhccCcc-hHHH--HhhCCCEEEEechHHHhhhhH
Confidence            455777778888999765 5566777666654  499999999987742111 1111  111233   337899999 89


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--cc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--KD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +|+||+++++++++.+....  ..++.+...+.++.++|+..  +. .+..+.++++++++.+.|++
T Consensus       221 lRlG~~i~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~  285 (354)
T PRK04635        221 ARCGFTLANEELIEILMRVI--APYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSM  285 (354)
T ss_pred             HHHhhhhCCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999988876532  23455666777778887532  11 34456788888888888875

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.08  E-value=1.3e-09  Score=94.66  Aligned_cols=137  Identities=12%  Similarity=0.097  Sum_probs=88.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+++++.+.     .++++|++|.+.+..|.+.+    +++|.++|++||+++|+|++++.. ....   ..   ....|
T Consensus       136 ~~~l~~~i~-----~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~~~-~~~~---pl---~~g~D  199 (390)
T PRK08133        136 LDAWRAAVR-----PNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFCTP-ALQQ---PL---KLGAD  199 (390)
T ss_pred             HHHHHHhcC-----cCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCccc-ccCC---ch---hhCCc
Confidence            466666664     36779999999888998876    899999999999999999998521 2111   11   11236


Q ss_pred             hh--hhccccC-CCCce-EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IV--TMAKGIA-NGFPM-GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~--~~sK~l~-~G~~~-g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++  +++|.++ .|+++ |++++++++++.+...........+|..+..++..++.+  ...+++..++...+.+.|++
T Consensus       200 ivv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~tl--~~R~~~~~~~a~~la~~L~~  276 (390)
T PRK08133        200 VVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLETL--SLRMEAHSANALALAEWLEA  276 (390)
T ss_pred             EEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccchH--HHHHHHHHHHHHHHHHHHHh
Confidence            55  4469998 57776 667777776665543332223344666666555555433  23345555666667666653

>PRK07908 hypothetical protein; Provisional

Probab=99.07  E-value=2.4e-09  Score=91.18  Aligned_cols=130  Identities=12%  Similarity=0.130  Sum_probs=86.7

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh---hhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV---TMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~---~~sK~l~-~G  130 (195)
                      +++++++-...+.+|.+.+    .++|.++|+ ++.++|+||+|..+ ..|. ..+..... .++++   +|||.++ .|
T Consensus       139 ~~~~i~l~np~NPTG~~~~----~~~l~~l~~-~~~~iIvDe~y~~~-~~~~-~~~l~~~~-~~~~i~i~S~SK~~~l~G  210 (349)
T PRK07908        139 DADLVVIGNPTNPTSVLHP----AEQLLALRR-PGRILVVDEAFADA-VPGE-PESLAGDD-LPGVLVLRSLTKTWSLAG  210 (349)
T ss_pred             CCCEEEEcCCCCCCCCCcC----HHHHHHHHh-cCCEEEEECcchhh-ccCC-cccccccc-CCCEEEEeecccccCCcc
Confidence            4556777666788998765    345667775 57889999999876 3343 22222122 12433   6799999 99


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--c-chhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--K-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++||+++++++++.+......  +..+++.++++.+.++-.  + -++++++++++++++.+.|++
T Consensus       211 lRiG~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  275 (349)
T PRK07908        211 LRVGYALGAPDVLARLTRGRAH--WPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA  275 (349)
T ss_pred             ceeeeeecCHHHHHHHHhcCCC--CCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999988888764332  344566666555555411  1 145678888889999888865

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.07  E-value=2.5e-09  Score=93.40  Aligned_cols=137  Identities=18%  Similarity=0.109  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.|++.++     .++++|++|...+..|.+..    +++|.++|++||+++|+||+|..-..    ....   ....|
T Consensus       135 ~~~l~~~i~-----~~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~----~~pl---~~gaD  198 (405)
T PRK08776        135 PRSLADALA-----QSPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPAL----QKPL---EFGAD  198 (405)
T ss_pred             HHHHHHhcC-----cCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCccccc----CCcc---cccCC
Confidence            466666664     25678999998888998755    99999999999999999999973111    1112   12346


Q ss_pred             hhhh--ccccCC--CCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTM--AKGIAN--GFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~--sK~l~~--G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++  +|.+++  +...|++++ ++++.+.+...........+|+.+.+++..++.+  +..+++..+|...+.+.|++
T Consensus       199 ivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~tl--~~r~~~~~~na~~la~~L~~  276 (405)
T PRK08776        199 LVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTL--DARLRVHQENADAIAALLDG  276 (405)
T ss_pred             EEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCcH--HHHHHHHHHHHHHHHHHHHc
Confidence            6655  599983  466788777 4667776654332233456889888888777665  34667778888888777764

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.06  E-value=3.6e-09  Score=91.59  Aligned_cols=138  Identities=12%  Similarity=0.136  Sum_probs=96.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     +++++|++..+.+.+|.+.+    +++|.++|++||+++|+|++|+ +|..   .....  ...+|
T Consensus       149 ~~~l~~~i~-----~~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~---~~~~~--~~~~d  213 (403)
T TIGR01979       149 LDDLEKLLT-----EKTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM---PVDVQ--ALDCD  213 (403)
T ss_pred             HHHHHHHhc-----cCCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc---ccCcc--ccCCC
Confidence            566766664     35678888888999998887    8999999999999999999997 4321   11122  23467


Q ss_pred             hhhh--ccccC-CCCceEEEEecHHHHHHhhccccc--------------------cCC-CchHHHHHHHHHHHHhhcc-
Q psy13322        120 IVTM--AKGIA-NGFPMGAVVTTTEIAQVLTKAAHF--------------------NTF-GGNPVGCVIASTVLDVIKD-  174 (195)
Q Consensus       120 i~~~--sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~--------------------~t~-~~~p~~~~aa~aal~~~~~-  174 (195)
                      ++++  +|.+| .|  +|++.+++++.+.+.....+                    +.. +.+..+++++.++++.+.+ 
T Consensus       214 ~~~~s~~K~~gp~G--~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~  291 (403)
T TIGR01979       214 FYVFSGHKMYGPTG--IGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAI  291 (403)
T ss_pred             EEEEecccccCCCC--ceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHh
Confidence            7655  59876 34  78888998877765422100                    001 2345567777788877643 


Q ss_pred             --hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 --EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 --~~~~~~l~~~~~~l~~~L~~  194 (195)
                        +.+.++..+..+++++.|++
T Consensus       292 g~~~~~~~~~~l~~~l~~~l~~  313 (403)
T TIGR01979       292 GLENIEAHEHELTAYALERLGE  313 (403)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhc
Confidence              46778888999999888864

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.06  E-value=2.8e-09  Score=92.98  Aligned_cols=136  Identities=12%  Similarity=0.072  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     .++++|++|.+.+..|.+..    +++|.++|++||+++|+|++|+. +..+. .  .   +...|
T Consensus       140 ~~~l~~~i~-----~~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~-~~~~~-~--l---~~g~D  203 (403)
T PRK07503        140 PAALKAAIS-----DKTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCT-PYLQR-P--L---ELGAD  203 (403)
T ss_pred             HHHHHHhcC-----ccCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc-cccCC-c--h---hhCCC
Confidence            566776664     25678999999999998776    99999999999999999999973 23232 1  1   23346


Q ss_pred             hh--hhccccCC-C-CceEEEEecHHHHHHhhcc--ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IV--TMAKGIAN-G-FPMGAVVTTTEIAQVLTKA--AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~--~~sK~l~~-G-~~~g~v~~~~~i~~~l~~~--~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++  +++|.+++ | ..+|++++++++.+.++..  ........+|+.++.++..|+.+.  ...++-.++...+.+.|+
T Consensus       204 i~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~~a~~L~  281 (403)
T PRK07503        204 LVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLA--LRMDRHCASAQAVAEWLA  281 (403)
T ss_pred             EEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchHH--HHHHHHHHHHHHHHHHHH
Confidence            55  45699995 4 6788888888888877632  122235567888877777776653  233334455555555554

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.06  E-value=7e-09  Score=88.77  Aligned_cols=142  Identities=11%  Similarity=0.077  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+++.   .++..|.+-.+.+.+|...+    +++|.++|+++|+++|+|.+|+ +|..   .....  ...+|
T Consensus       119 ~~~l~~~l~~~---~~~~~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~~livDa~~~-~g~~---~~~~~--~~~~d  185 (368)
T PRK13479        119 AAEVEAALAAD---PRITHVALVHCETTTGILNP----LDEIAAVAKRHGKRLIVDAMSS-FGAI---PIDIA--ELGID  185 (368)
T ss_pred             HHHHHHHHHhC---CCCcEEEEEcccCccccccC----HHHHHHHHHHcCCEEEEEcccc-cCCc---ccccc--ccCce
Confidence            67888877643   24555666666667888877    8999999999999999998875 6432   11222  23456


Q ss_pred             hhhh--ccccCCCCceEEEEecHHHHHHhhcccc-----------------ccCCCchHHHHHHHHHHHHhhcc----hh
Q psy13322        120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTKAAH-----------------FNTFGGNPVGCVIASTVLDVIKD----EE  176 (195)
Q Consensus       120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~~-----------------~~t~~~~p~~~~aa~aal~~~~~----~~  176 (195)
                      +++.  +|.+.+...+|++++++++.+.+.....                 ...|+.+..++++..++++.+.+    ++
T Consensus       186 ~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~  265 (368)
T PRK13479        186 ALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPA  265 (368)
T ss_pred             EEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHH
Confidence            6544  5988632236999999988777654321                 11135566677777778876532    45


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy13322        177 LQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       177 ~~~~l~~~~~~l~~~L~~  194 (195)
                      ..+++.++++++++.|++
T Consensus       266 ~~~~~~~~~~~l~~~L~~  283 (368)
T PRK13479        266 RGARYANNQRTLVAGMRA  283 (368)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            667888899999888865

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.03  E-value=2.9e-09  Score=91.66  Aligned_cols=137  Identities=14%  Similarity=0.091  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     .++++|++|...++.|.    ...+++|.++|++||+++|+||++.. +..+.   ..   ....|
T Consensus       126 ~~~l~~~i~-----~~tklv~le~P~NP~~~----~~dl~~I~~la~~~g~~lIvD~t~~~-~~~~~---p~---~~g~d  189 (366)
T PRK08247        126 LKAIEQAIT-----PNTKAIFIETPTNPLMQ----ETDIAAIAKIAKKHGLLLIVDNTFYT-PVLQR---PL---EEGAD  189 (366)
T ss_pred             HHHHHHhcc-----cCceEEEEECCCCCCCc----HHHHHHHHHHHHHcCCEEEEECCCcc-ccccC---ch---hcCCc
Confidence            566776664     25678999998877554    34599999999999999999999842 11111   11   12235


Q ss_pred             hh--hhccccCC--CCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IV--TMAKGIAN--GFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~--~~sK~l~~--G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++  ++||.+++  +...|+++++ +++.+.+.......+...+|+.+..++..|+.+.  ..+++.+++.+.+.+.|++
T Consensus       190 i~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl~--~r~~~~~~~a~~l~~~L~~  267 (366)
T PRK08247        190 IVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLA--LRMRQHEENAKAIAAFLNE  267 (366)
T ss_pred             EEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHh
Confidence            44  56799984  4678888886 5677766544333344567787777777776543  3445668888888888764

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.03  E-value=6.3e-09  Score=90.59  Aligned_cols=144  Identities=15%  Similarity=0.155  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH--HHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYEL--IKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l--~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      .++|++.+..... .++++|++-.+.+.+|.+.+    +++|.++  |++||+++|+|++++ +|..     .+......
T Consensus       123 ~~~l~~~l~~~~~-~~~k~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~g~~~vvD~v~s-~g~~-----~id~~~~~  191 (401)
T PLN02409        123 LDILKSKLRQDTN-HKIKAVCVVHNETSTGVTND----LAGVRKLLDCAQHPALLLVDGVSS-IGAL-----DFRMDEWG  191 (401)
T ss_pred             HHHHHHHHhhCcC-CCccEEEEEeecccccccCC----HHHHHHHHhhhccCcEEEEEcccc-cCCc-----cccccccC
Confidence            6788888875210 25667877777777888876    7777888  999999999999987 5321     12211234


Q ss_pred             cchhhh--ccccCCCCceEEEEecHHHHHHhhccc-----c----------cc---CCCchHHHHHHHHHHHHhhcc---
Q psy13322        118 PDIVTM--AKGIANGFPMGAVVTTTEIAQVLTKAA-----H----------FN---TFGGNPVGCVIASTVLDVIKD---  174 (195)
Q Consensus       118 pdi~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~-----~----------~~---t~~~~p~~~~aa~aal~~~~~---  174 (195)
                      .|++++  +|.|++...+|+++.++++++.+....     .          ..   .++.+...+.+..++++.+.+   
T Consensus       192 ~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~  271 (401)
T PLN02409        192 VDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGL  271 (401)
T ss_pred             ccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhH
Confidence            566655  599975445899999998877765321     0          11   224455677888888887643   


Q ss_pred             hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++.++.+++.+++++.|++
T Consensus       272 e~i~~~~~~l~~~l~~~L~~  291 (401)
T PLN02409        272 ENVIARHARLGEATRLAVEA  291 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            56778889999999988865

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.03  E-value=4.1e-09  Score=91.47  Aligned_cols=137  Identities=12%  Similarity=0.078  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|++|.+.++.|....    +++|.++|++||+++|+||+++. +..+. .  .   +...|
T Consensus       136 ~e~l~~~i~-----~~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~-~~~~~-p--~---~~gaD  199 (388)
T PRK07811        136 LDAVRAAIT-----PRTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFAS-PYLQQ-P--L---ALGAD  199 (388)
T ss_pred             HHHHHHhcC-----cCCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCCc-cccCC-c--h---hhCCc
Confidence            566776664     25679999999888887666    99999999999999999999873 22222 1  1   22346


Q ss_pred             hhh--hccccCC-C-CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVT--MAKGIAN-G-FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~--~sK~l~~-G-~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++  ++|.+++ | ..+|+++++ +++.+.+...........+|+.+..++..|+.+  +..+++..++...+.+.|++
T Consensus       200 ivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~tl--~~R~~~~~~na~~la~~L~~  277 (388)
T PRK07811        200 VVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTL--AVRMDRHSENAEAVAEFLAG  277 (388)
T ss_pred             EEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHh
Confidence            654  4699984 3 467888875 566665543322222334566666555555543  33456666777777777653

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.02  E-value=7.9e-10  Score=92.33  Aligned_cols=143  Identities=13%  Similarity=0.053  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-ccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIA-ESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aaviv-Epv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~gr~G~~~~~~~~~~~~  117 (195)
                      .+++++.+++.   .++++|++ .|  +..|...+    +++|.++|++||+++|+||+|.. +.+.+. . ........
T Consensus       142 ~~~l~~~l~~~---~~~k~v~l~~p--~~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~~~~~-~-~~~~~~~~  210 (294)
T cd00615         142 PETFKKALIEH---PDAKAAVITNP--TYYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFRFHPI-L-PSSAAMAG  210 (294)
T ss_pred             HHHHHHHHHhC---CCceEEEEECC--CCCCEecC----HHHHHHHHHhcCCeEEEECcchhhhccCcc-c-CcchhhcC
Confidence            68888888754   24444444 44  34787776    99999999999999999999974 322222 1 11111234


Q ss_pred             cchh--hhccccCCCCce-EEEEecHHH--HHHhhccc-cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Q psy13322        118 PDIV--TMAKGIANGFPM-GAVVTTTEI--AQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQII  189 (195)
Q Consensus       118 pdi~--~~sK~l~~G~~~-g~v~~~~~i--~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~  189 (195)
                      .|++  +++|+++ |++. |++..+++.  .+.+.... ...|.+.+...+++..++++.+..  +++.+++.++.++++
T Consensus       211 ~div~~S~hK~l~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r  289 (294)
T cd00615         211 ADIVVQSTHKTLP-ALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELALYAR  289 (294)
T ss_pred             CcEEEEchhcccc-hHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            5665  4469885 3433 333333321  12222211 223445666777777788777643  567788889999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       290 ~~l~~  294 (294)
T cd00615         290 QEINK  294 (294)
T ss_pred             HHHhC
Confidence            88864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PLN02509 cystathionine beta-lyase

Probab=99.02  E-value=4.3e-09  Score=93.33  Aligned_cols=137  Identities=15%  Similarity=0.129  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+.     .++++|++|.+.++.|.+..    +++|.++|++||+++|+||+|. .+..+. .     .+...|
T Consensus       207 ~e~l~~ai~-----~~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a-~~~~~~-p-----l~~gaD  270 (464)
T PLN02509        207 LDEVAAAIG-----PQTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIM-SPVLSR-P-----LELGAD  270 (464)
T ss_pred             HHHHHHhCC-----cCCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCcc-ccccCC-h-----hhcCCc
Confidence            456666553     36779999999999998655    9999999999999999999985 333332 1     123457


Q ss_pred             hhhh--ccccCC-C-CceEEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTM--AKGIAN-G-FPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~--sK~l~~-G-~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++  +|.++| | .-.|++++++ .+.+.+...........+|+.++.++..|+.+.  ..+++..++.+++.+.|++
T Consensus       271 ivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL~--~R~~r~~~nA~~la~~L~~  348 (464)
T PLN02509        271 IVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSS  348 (464)
T ss_pred             EEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhc
Confidence            7655  599985 3 3456666544 444433221111122347888888888888763  3566777777777777753

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.00  E-value=5.3e-09  Score=90.76  Aligned_cols=137  Identities=15%  Similarity=0.076  Sum_probs=91.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+++++.+.+    .++++|++|.+.++.|.+.+    +++|.++|++||+++|+||+|+ .+....   ... .|  .|
T Consensus       126 ~~~l~~~i~~----~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a-~~~~~~---~l~-~G--aD  190 (385)
T PRK08574        126 TEDIIEAIKE----GRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFA-TPLLYR---PLR-HG--AD  190 (385)
T ss_pred             HHHHHHhcCc----cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCC-ccccCC---hhh-hC--Cc
Confidence            4667776652    25778999999999998877    8999999999999999999996 322221   111 23  36


Q ss_pred             hh--hhccccCC-CC-ceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IV--TMAKGIAN-GF-PMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~--~~sK~l~~-G~-~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++  +++|.++| |- ..|++++ ++++.+.+.......+...+|+.++.++..|+.+.  ..+++-.++..++.+.|+
T Consensus       191 ivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL~--~R~~~~~~na~~la~~L~  267 (385)
T PRK08574        191 FVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLE--VRFERQCRNAMAIAEFLS  267 (385)
T ss_pred             EEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHH
Confidence            55  45699984 43 3464555 66777766543332344557887777777777653  244555556666666665

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=98.99  E-value=7.5e-09  Score=89.07  Aligned_cols=138  Identities=17%  Similarity=0.113  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALI-AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavi-vEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      .+++++.|..     ++++++ +.+..+..|...+    +++|.++|++||+++|+|++|+ .  ...   ....+|  .
T Consensus       138 ~~~le~ai~~-----~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~--~~~---~~~~~g--~  200 (363)
T TIGR01437       138 AEQLEAAITE-----KTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-E--DLQ---KYYRLG--A  200 (363)
T ss_pred             HHHHHHhcCh-----hceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-C--chH---HHHHcC--C
Confidence            6788887762     334444 5554455676666    8899999999999999999997 2  111   111123  4


Q ss_pred             chhhhc--cccCCCCceEEEEecHHHHHHhhccccc--cCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        119 DIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHF--NTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 di~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~--~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      |++++|  |.|+ |+++|++++++++++.+....+.  ..+.....++++..++++.+.+  .+..+...++.+++.+.|
T Consensus       201 D~~~~S~~K~l~-gp~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L  279 (363)
T TIGR01437       201 DLVIYSGAKAIE-GPTSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEAL  279 (363)
T ss_pred             CEEEEeCCcccC-CCceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHH
Confidence            777665  9885 56789998888877765432211  1111112334555556665432  344455556677888888


Q ss_pred             hcC
Q psy13322        193 RVV  195 (195)
Q Consensus       193 ~~l  195 (195)
                      +++
T Consensus       280 ~~i  282 (363)
T TIGR01437       280 NTL  282 (363)
T ss_pred             hcC
Confidence            753

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>KOG1358|consensus

Probab=98.99  E-value=7.4e-10  Score=94.14  Aligned_cols=150  Identities=20%  Similarity=0.107  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHhcC------CC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCc
Q psy13322         37 NKFYEQLVNAFQYNV------PI--TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY  108 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~------~~--~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~  108 (195)
                      ++++++|+..+.+..      ++  -....|++|.++-+.|++++    |++|.++..||...+|+||..+ ||..|+.+
T Consensus       207 hndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~~G  281 (467)
T KOG1358|consen  207 HNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGKTG  281 (467)
T ss_pred             CCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccccC
Confidence            344677777664321      11  12668999999999999999    9999999999999999999998 65555422


Q ss_pred             c-cccccCCCc---chhhhc--cccCCCCceEEEEecHHHHHHhh--ccccccCCCchHHHHHHHHHHHHhhcc-hhHHH
Q psy13322        109 W-GFEMHGVSP---DIVTMA--KGIANGFPMGAVVTTTEIAQVLT--KAAHFNTFGGNPVGCVIASTVLDVIKD-EELQY  179 (195)
Q Consensus       109 ~-~~~~~~~~p---di~~~s--K~l~~G~~~g~v~~~~~i~~~l~--~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~  179 (195)
                      . -.+|+++.+   |+++.|  -++++|  .|+++++.-+.++-+  ..++-++-+.+|+...||..+++.++. ++..+
T Consensus       282 rGvteH~~v~~~~iDiv~~sm~~alas~--GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~  359 (467)
T KOG1358|consen  282 RGVTEHFGVPITDIDIVTASMETALASG--GGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQ  359 (467)
T ss_pred             ccccccCCCCccceeeeeeccccccccc--CceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhh
Confidence            2 347887753   566554  555522  356777555544322  222333445688888999999998854 56666


Q ss_pred             HHHHHHHHHHHHhh
Q psy13322        180 NCKQVSAQIIGYLR  193 (195)
Q Consensus       180 ~l~~~~~~l~~~L~  193 (195)
                      .++.....+...|+
T Consensus       360 ~L~~k~~~~H~~l~  373 (467)
T KOG1358|consen  360 PLRAKVAKFHAALS  373 (467)
T ss_pred             hhhccccccchhhh
Confidence            77766666555554

>PLN02651 cysteine desulfurase

Probab=98.98  E-value=3.9e-09  Score=90.44  Aligned_cols=138  Identities=17%  Similarity=0.181  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .++|++.|.     +++++|++..+.+..|.+.+    +++|.++|++||+++++|.+|+ +|..     .+....+..|
T Consensus       128 ~~~l~~~i~-----~~t~lv~v~~~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~-----~~~~~~~~~D  192 (364)
T PLN02651        128 LDELAAAIR-----PDTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-VGKI-----PVDVDDLGVD  192 (364)
T ss_pred             HHHHHHhcC-----CCcEEEEEECCCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-hCCc-----ccCcccCCCC
Confidence            577777775     35678999999999998887    9999999999999999999998 4321     1222234469


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhccccc------cC-CCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHF------NT-FGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI  188 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~------~t-~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l  188 (195)
                      ++++|  | +++...+|++..+++..+.+.....+      .. ...|..++.+..++|+.+.+  ++..++.++..+++
T Consensus       193 ~~~~s~hK-~~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l  271 (364)
T PLN02651        193 LMSISGHK-IYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERL  271 (364)
T ss_pred             EEEechhh-hCCCCceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            88886  8 54323478888887655444322110      11 13456677888888887743  55667888888888


Q ss_pred             HHHhh
Q psy13322        189 IGYLR  193 (195)
Q Consensus       189 ~~~L~  193 (195)
                      .+.|+
T Consensus       272 ~~~l~  276 (364)
T PLN02651        272 LNGLR  276 (364)
T ss_pred             HHHHH
Confidence            88775

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=98.96  E-value=1.4e-08  Score=85.99  Aligned_cols=135  Identities=19%  Similarity=0.188  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|++..+   .|...+    +++|+++|++||+++|+|++|+ +|....    -...+...|
T Consensus        96 ~~~l~~~i~-----~~~~~v~~~~~---~G~~~~----~~~i~~l~~~~~i~li~D~a~~-~g~~~~----~~~~~~~~d  158 (352)
T cd00616          96 PELIEAAIT-----PRTKAIIPVHL---YGNPAD----MDAIMAIAKRHGLPVIEDAAQA-LGATYK----GRKVGTFGD  158 (352)
T ss_pred             HHHHHHhcC-----cCCeEEEEECC---CCCcCC----HHHHHHHHHHcCCeEEEECCCC-CCCeEC----CEEcccCcc
Confidence            567777663     25667776553   565554    8999999999999999999998 443211    011222346


Q ss_pred             hhhhc----cccCCCCceEEEEec-HHHHHHhhcc---c------------cccCCCchHHHHHHHHHHHHhhcchhHHH
Q psy13322        120 IVTMA----KGIANGFPMGAVVTT-TEIAQVLTKA---A------------HFNTFGGNPVGCVIASTVLDVIKDEELQY  179 (195)
Q Consensus       120 i~~~s----K~l~~G~~~g~v~~~-~~i~~~l~~~---~------------~~~t~~~~p~~~~aa~aal~~~~~~~~~~  179 (195)
                      +.++|    |.+++| .+|+++++ +++.+.+...   .            ...++..+++.++.++..++.+  ++..+
T Consensus       159 ~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~  235 (352)
T cd00616         159 AGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKL--DEIIA  235 (352)
T ss_pred             eeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhh--HHHHH
Confidence            66665    999643 45777775 4666654321   1            0123345677777777666654  45667


Q ss_pred             HHHHHHHHHHHHhhc
Q psy13322        180 NCKQVSAQIIGYLRV  194 (195)
Q Consensus       180 ~l~~~~~~l~~~L~~  194 (195)
                      +.+++.+++++.|++
T Consensus       236 ~~~~~~~~~~~~L~~  250 (352)
T cd00616         236 RRREIAERYKELLAD  250 (352)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            788888998888865

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=98.96  E-value=2.2e-08  Score=88.24  Aligned_cols=145  Identities=12%  Similarity=-0.002  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc--cccCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF--EMHGV  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~--~~~~~  116 (195)
                      +++.|++.|+...+ ..+.+|+..|-.+..|..    +.+++|.++|++||+++|+|++|+.. ..-  ....  .....
T Consensus       190 D~e~Le~aIt~~~~-kai~~Vv~Tp~t~~~g~~----ddL~eIa~la~k~gI~lIvDaAyg~~-~~~--~~~~~~~g~~~  261 (444)
T TIGR03531       190 DVEDIERAIEEIGP-DNILCVLSTTSCFAPRSP----DDIEEIAKICANYDIPHIVNNAYGLQ-SNK--YMELINKAIKV  261 (444)
T ss_pred             CHHHHHHHHHhccC-CCEEEEEEcCCcCCCcch----hCHHHHHHHHHHcCCEEEEECcCcCc-Chh--hhhhhhccccc
Confidence            36889999885432 256667666653333333    34999999999999999999999832 110  0001  11112


Q ss_pred             -Ccchhhh--ccccC-CCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Q psy13322        117 -SPDIVTM--AKGIA-NGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQII  189 (195)
Q Consensus       117 -~pdi~~~--sK~l~-~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~  189 (195)
                       ..|++++  +|.+. .|+ .|.+++ ++++.+.+...... .. .+..++.+..+++....+  ++++++..++.+++.
T Consensus       262 Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g-~~-~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~  338 (444)
T TIGR03531       262 GRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPG-RA-SASPSLDVLITLLSLGSKGYLELLKERKEMYKYLK  338 (444)
T ss_pred             cCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccC-CC-CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence             2466666  49988 454 555656 56777777654222 22 233455555555554433  577788888888888


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       339 ~~L~~  343 (444)
T TIGR03531       339 ELLQK  343 (444)
T ss_pred             HHHHH
Confidence            88875

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=98.95  E-value=1.8e-08  Score=88.06  Aligned_cols=138  Identities=9%  Similarity=0.078  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+.     .++++|++..+.+..|.+.+    +++|.++|++||+++|+|++|. +|...   ....  ...+|
T Consensus       163 ~~~l~~~i~-----~~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~~---~~~~--~~~~d  227 (424)
T PLN02855        163 VEQLKELLS-----EKTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHMP---VDVQ--TLGAD  227 (424)
T ss_pred             HHHHHHHhc-----cCceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCcC---CCch--hcCCC
Confidence            567777665     25678889999999998887    8899999999999999999996 43221   1122  23467


Q ss_pred             hhhh--ccccC-CCCceEEEEecHHHHHHhhccccc--------------------cCC-CchHHHHHHHHHHHHhhcc-
Q psy13322        120 IVTM--AKGIA-NGFPMGAVVTTTEIAQVLTKAAHF--------------------NTF-GGNPVGCVIASTVLDVIKD-  174 (195)
Q Consensus       120 i~~~--sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~--------------------~t~-~~~p~~~~aa~aal~~~~~-  174 (195)
                      ++++  .|.+| .|  +|++.+++++.+.+.....+                    +.. +.+..+.++..++++.+.+ 
T Consensus       228 ~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~  305 (424)
T PLN02855        228 FLVASSHKMCGPTG--IGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEI  305 (424)
T ss_pred             EEEeecccccCCCc--cEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHh
Confidence            7655  59655 34  78999998887766432100                    111 1355666777788876643 


Q ss_pred             --hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 --EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 --~~~~~~l~~~~~~l~~~L~~  194 (195)
                        ++..++.++..+++++.|++
T Consensus       306 g~~~i~~~~~~l~~~l~~~L~~  327 (424)
T PLN02855        306 GMDRIHEYEVELGTYLYEKLSS  327 (424)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhc
Confidence              56778888899999888865

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=98.94  E-value=1.3e-08  Score=88.33  Aligned_cols=136  Identities=15%  Similarity=0.131  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.+.     .++++|++|...+..|.+..    +++|.++|+++|+++|+||+|... ....   ..   .+..|
T Consensus       126 ~~~l~~ai~-----~~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~---pl---~~gaD  189 (382)
T TIGR02080       126 EQALRAALA-----QKPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSP-ALQN---PL---ALGAD  189 (382)
T ss_pred             HHHHHHhcC-----cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCccc-ccCC---ch---hhCCC
Confidence            466666664     25678999999999998776    889999999999999999999632 1111   11   12236


Q ss_pred             hh--hhccccCC--CCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IV--TMAKGIAN--GFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~--~~sK~l~~--G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++  +++|.++|  ++..|++++ ++++.+.+.......+...+|+.+..++..++.+..  .+++..++...+.+.|+
T Consensus       190 ivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~tl~~--R~~~~~~na~~~a~~L~  266 (382)
T TIGR02080       190 LVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVA--RMRLQQRNAQAIVEYLQ  266 (382)
T ss_pred             EEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccchHHH--HHHHHHHHHHHHHHHHH
Confidence            55  55799974  567888776 567777665443344556788888877777765532  34556667776666665

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>KOG0256|consensus

Probab=98.93  E-value=2.7e-08  Score=85.16  Aligned_cols=153  Identities=16%  Similarity=0.203  Sum_probs=101.3

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc----
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH----  114 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~----  114 (195)
                      .+.||.++++.+.. -+|.+||+--.++.=|+ ..+++.|..+...+.++++.+|+|||++|-.+....|.++...    
T Consensus       210 v~alE~A~~~A~~~~~kVkGvlitNPsNPLG~-~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~  288 (471)
T KOG0256|consen  210 VEALEAALNQARKLGLKVKGVLITNPSNPLGT-TLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDP  288 (471)
T ss_pred             HHHHHHHHHHHHHhCCceeEEEEeCCCCCCCC-ccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhcc
Confidence            45666665544321 48998888877777786 5577889999999999999999999999865544435444221    


Q ss_pred             CCCcc----hhhhccccC-CCCceEEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHh--h-cc--hhHHHHHHH
Q psy13322        115 GVSPD----IVTMAKGIA-NGFPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDV--I-KD--EELQYNCKQ  183 (195)
Q Consensus       115 ~~~pd----i~~~sK~l~-~G~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~--~-~~--~~~~~~l~~  183 (195)
                      .+.||    +-.+||-|| .|+++|.+-..+ ++..+..+....+  ..++..+.-...-|.-  + +.  .+...+++.
T Consensus       289 ~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~--~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~  366 (471)
T KOG0256|consen  289 HLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFG--LVSSQTQYLLASLLSDEEFTREYLRENNKRLRI  366 (471)
T ss_pred             ccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhcc--CCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            12455    236699999 999999988765 5666555443211  2245555544444432  2 11  345677888


Q ss_pred             HHHHHHHHhhcC
Q psy13322        184 VSAQIIGYLRVV  195 (195)
Q Consensus       184 ~~~~l~~~L~~l  195 (195)
                      +-.++.+.|+++
T Consensus       367 rh~~~~~gLk~l  378 (471)
T KOG0256|consen  367 RHRYIVEGLKAL  378 (471)
T ss_pred             HHHHHHhhHHhc
Confidence            888888888764

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=98.92  E-value=6.7e-08  Score=82.92  Aligned_cols=140  Identities=15%  Similarity=0.245  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.|.     .++..|.+--+.+..|.+.+    +++|.++|+++|+++++|=+|+ +|..-     +....+..|
T Consensus       129 ~~~~~~~l~-----~~~~lv~~~~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~~-----id~~~~~~D  193 (371)
T PF00266_consen  129 LEDLEEALN-----PDTRLVSISHVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCVP-----IDLDELGAD  193 (371)
T ss_dssp             HHHHHHHHH-----TTESEEEEESBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTSS-------TTTTTES
T ss_pred             hhhhhhhhc-----cccceEEeecccccccEEee----eceehhhhhccCCceeEechhc-ccccc-----ccccccccc
Confidence            688888886     37778999999889999888    9999999999999999999988 54331     222245678


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhccccccC------------------C---CchHHHHHHHHHHHHhhcc--
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHFNT------------------F---GGNPVGCVIASTVLDVIKD--  174 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~~t------------------~---~~~p~~~~aa~aal~~~~~--  174 (195)
                      ++++|  | |+++--+|.+..+++..+.+.+...+..                  |   ..+.....+..++++.+.+  
T Consensus       194 ~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g  272 (371)
T PF00266_consen  194 FLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIG  272 (371)
T ss_dssp             EEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHH
T ss_pred             eeeecccc-cCCCCchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccc
Confidence            88887  9 8765458999999998888854321111                  1   2355667777788887743  


Q ss_pred             -hhHHHHHHHHHHHHHHHhhcC
Q psy13322        175 -EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       175 -~~~~~~l~~~~~~l~~~L~~l  195 (195)
                       +.+.++..++.+++.+.|.++
T Consensus       273 ~~~i~~~~~~l~~~~~~~l~~~  294 (371)
T PF00266_consen  273 IERIRERIRELAEYLREALEEL  294 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccchhhhhhHHHHHHhhhhcC
Confidence             566788888888888888653

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=98.92  E-value=1.3e-08  Score=87.41  Aligned_cols=135  Identities=18%  Similarity=0.204  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+++++.++     .++++|++..+.+.+|.+.+    +++|.++|++||+++++|++|+ +|..     .+.......|
T Consensus       126 ~~~l~~~i~-----~~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~-----~~~~~~~~~D  190 (379)
T TIGR03402       126 LEELRAAIT-----DDTALVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI-----PIDLKEMNID  190 (379)
T ss_pred             HHHHHHhcC-----CCcEEEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-cccc-----ccCcccCCCC
Confidence            567777664     25678888888889998887    8899999999999999999997 4321     2222235678


Q ss_pred             hhhhc--cccC-CCCceEEEEecHHHHHHhhcccc-------ccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH
Q psy13322        120 IVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAAH-------FNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQ  187 (195)
Q Consensus       120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~~-------~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~  187 (195)
                      ++++|  |-+| .|  +|++..+++..  +.....       ......|..+..+..++++.+.+  ++..++.+++.++
T Consensus       191 ~~~~s~~K~~gp~G--~g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~  266 (379)
T TIGR03402       191 MLSLSGHKLHGPKG--VGALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDR  266 (379)
T ss_pred             EEEEcHHHcCCCCc--eEEEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            88888  9444 34  67777776431  211110       01123456677777788877643  4556778888888


Q ss_pred             HHHHhh
Q psy13322        188 IIGYLR  193 (195)
Q Consensus       188 l~~~L~  193 (195)
                      +++.|+
T Consensus       267 l~~~l~  272 (379)
T TIGR03402       267 LEAGLL  272 (379)
T ss_pred             HHHHHH
Confidence            888876

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=98.91  E-value=2.2e-08  Score=86.90  Aligned_cols=136  Identities=13%  Similarity=0.118  Sum_probs=92.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.+.     .++++|++|...+..|.+..    +++|.++|+++|+++|+||+|... ....   ..   ....|
T Consensus       127 ~e~l~~~l~-----~~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~-~~~~---pl---~~gaD  190 (386)
T PRK08045        127 EQALRAALA-----EKPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP-ALQN---PL---ALGAD  190 (386)
T ss_pred             HHHHHHhcc-----cCCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc-ccCC---ch---hhCCC
Confidence            456666654     25678999999999998776    899999999999999999998632 1111   11   22336


Q ss_pred             hh--hhccccCC--CCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IV--TMAKGIAN--GFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~--~~sK~l~~--G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++  +++|.++|  +...|++++ ++++.+.+.......+...+|+.+..++.+|+.+.  ..+++..++...+.+.|+
T Consensus       191 ivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~tl~--~R~~~~~~na~~la~~L~  267 (386)
T PRK08045        191 LVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQ  267 (386)
T ss_pred             EEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhccHH--HHHHHHHHHHHHHHHHHH
Confidence            55  45699973  456788777 46676666543333445578888888888887653  244556666666666654

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=98.91  E-value=5.2e-08  Score=83.34  Aligned_cols=147  Identities=10%  Similarity=0.115  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc-CCCcccccccCC-
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT-GDNYWGFEMHGV-  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~-G~~~~~~~~~~~-  116 (195)
                      ++++|++.+++.    ..+.+++.+ .++.|.+.+    +++|.++|++||+++++|++|+++-.. ...........+ 
T Consensus       142 d~~~l~~~l~~~----~~~vv~~~~-~~~tG~~~~----~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~  212 (373)
T TIGR03812       142 DVKDVEDLIDDN----TIGIVGIAG-TTELGQIDD----IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFS  212 (373)
T ss_pred             CHHHHHHHHhhC----cEEEEEECC-CCCCCccCC----HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcccc
Confidence            367788877632    345566665 467898876    999999999999999999999754110 000000101111 


Q ss_pred             --Ccchhhhc--cccC-CCCceEEEE-ecHHHHHHhhccccc--cC------CCchHHHHHHHHHHHHhhcc---hhHHH
Q psy13322        117 --SPDIVTMA--KGIA-NGFPMGAVV-TTTEIAQVLTKAAHF--NT------FGGNPVGCVIASTVLDVIKD---EELQY  179 (195)
Q Consensus       117 --~pdi~~~s--K~l~-~G~~~g~v~-~~~~i~~~l~~~~~~--~t------~~~~p~~~~aa~aal~~~~~---~~~~~  179 (195)
                        ..|.+++|  | ++ ++.+.|+++ .++++.+.+......  ..      .+.++.+++++.++|+.+.+   +++.+
T Consensus       213 ~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~  291 (373)
T TIGR03812       213 LPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVA  291 (373)
T ss_pred             CCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHH
Confidence              23454443  7 54 556776555 577777766432111  10      12345678888899987754   45788


Q ss_pred             HHHHHHHHHHHHhhcC
Q psy13322        180 NCKQVSAQIIGYLRVV  195 (195)
Q Consensus       180 ~l~~~~~~l~~~L~~l  195 (195)
                      ++.+++++|++.|+++
T Consensus       292 ~~~~~~~~l~~~L~~~  307 (373)
T TIGR03812       292 ECMENTRYLVEELKKI  307 (373)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999998753

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=98.90  E-value=1.5e-08  Score=87.37  Aligned_cols=136  Identities=15%  Similarity=0.124  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.+.     .++++|++|...+..|....    +++|+++|+++|+++|+||++.. +..++      ..+.-.|
T Consensus       126 ~~~l~~~i~-----~~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~-~~~~~------pl~~gaD  189 (364)
T PRK07269        126 EEELIAAIE-----EDTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYS-PIYQR------PIELGAD  189 (364)
T ss_pred             HHHHHHhcC-----cCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc-cccCC------chhhCCc
Confidence            456666664     35678999999998887776    99999999999999999999642 11111      1244567


Q ss_pred             hhhhc--cccCC-C-CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IVTMA--KGIAN-G-FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~~~s--K~l~~-G-~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++++|  |.++| | .-.|+++++ +++.+.+...........+|+.++.++..|+.+.  ..+++-+++...+.+.|+
T Consensus       190 ivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL~--~r~~~~~~na~~~a~~L~  266 (364)
T PRK07269        190 IVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLS--LRMERSTANAQEVVAFLK  266 (364)
T ss_pred             EEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHH
Confidence            77665  99984 3 345677764 5676666532212234568888888887777653  344555666666666654

>PRK07582 cystathionine gamma-lyase; Validated

Probab=98.90  E-value=1.7e-08  Score=87.00  Aligned_cols=127  Identities=14%  Similarity=0.106  Sum_probs=87.2

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh--hhccccCC--C
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV--TMAKGIAN--G  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~--~~sK~l~~--G  130 (195)
                      +++.|++|...+.+|.+.+    +++|.++|+++|+++|+||+|...  .|..  ..   .+..|++  +++|.++|  |
T Consensus       132 ~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~--~~~~--p~---~~g~Divv~S~sK~l~G~~g  200 (366)
T PRK07582        132 GADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTATP--LGQR--PL---ELGADLVVASDTKALTGHSD  200 (366)
T ss_pred             CceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCc--cccC--ch---hcCCcEEEecccccccCCCC
Confidence            5678999998888887665    999999999999999999998521  2221  11   2334665  44699974  6


Q ss_pred             CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .++|+++++ +++.+.+...........+|+.+..++..|+.+  +-.+++..++...+.+.|++
T Consensus       201 ~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl--~~R~~~~~~na~~la~~L~~  263 (366)
T PRK07582        201 LLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTL--GLRFARQCANALAVAELLAG  263 (366)
T ss_pred             eeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccH--HHHHHHHHHHHHHHHHHHHh
Confidence            788999875 677776654332223345678777666666644  23446667777777777764

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=98.88  E-value=1.8e-08  Score=87.19  Aligned_cols=136  Identities=16%  Similarity=0.149  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.++     .++++|++|.+.++.|.+..    +++|.++|++||+++|+|++|. .+....   ..   ....|
T Consensus       121 ~~~le~~i~-----~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~-~~~~~~---~l---~~g~D  184 (378)
T TIGR01329       121 LDKVKAALG-----PKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMM-SPLLCN---PL---ELGAD  184 (378)
T ss_pred             HHHHHHhcC-----cCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCc-ccccCC---hh---hcCCc
Confidence            466666664     36789999999999998876    9999999999999999999984 222111   12   22347


Q ss_pred             hhhh--ccccCC--CCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IVTM--AKGIAN--GFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~~~--sK~l~~--G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++++  +|.++|  +...|+++++ +++.+.+...........+|+.+..++..++.+  +...++-.++...+.+.|+
T Consensus       185 i~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl--~~R~e~~~~na~~la~~L~  261 (378)
T TIGR01329       185 IVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL--AIRIEKQQENARAIAMFLS  261 (378)
T ss_pred             EEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH--HHHHHHHHHHHHHHHHHHH
Confidence            7655  599984  3567888774 455555543322123344666655444444433  3344555556555555554

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.88  E-value=2.7e-08  Score=87.43  Aligned_cols=83  Identities=19%  Similarity=0.183  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     .++++|++|++.+..|.+..    +++|.++|++||+++|+||+|+ .+....      ......|
T Consensus       133 ~e~le~ai~-----~~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a-~~~~~~------p~~~gaD  196 (425)
T PRK06084        133 IAALEALID-----ERTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVA-TPVLCR------PFEHGAD  196 (425)
T ss_pred             HHHHHHHhc-----cCCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccCC------hhhcCCC
Confidence            577777775     25678999999999998877    8999999999999999999997 322221      1123456


Q ss_pred             hh--hhccccCC-CCceEEEEe
Q psy13322        120 IV--TMAKGIAN-GFPMGAVVT  138 (195)
Q Consensus       120 i~--~~sK~l~~-G~~~g~v~~  138 (195)
                      ++  +++|.+++ |.++|.+++
T Consensus       197 ivv~S~tK~l~G~g~~~gG~v~  218 (425)
T PRK06084        197 IVVHSLTKYIGGHGTSIGGIVV  218 (425)
T ss_pred             EEEECchhcccccccceeEEEE
Confidence            66  55699984 666665555

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=98.87  E-value=3.5e-08  Score=84.48  Aligned_cols=140  Identities=19%  Similarity=0.220  Sum_probs=91.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .++|++.+.     .++++|++..+.+++|.+.+    +++|.++|+++|+++|+|++|+ +|...-   ...  ...+|
T Consensus       127 ~~~l~~~~~-----~~~~~v~~~~~~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~~~---~~~--~~~~D  191 (376)
T TIGR01977       127 PERIKRAIK-----TNTKLIVVSHASNVTGTILP----IEEIGELAQENGIFFILDAAQT-AGVIPI---DMT--ELAID  191 (376)
T ss_pred             HHHHHHhcC-----CCCeEEEEECCCCCccccCC----HHHHHHHHHHcCCEEEEEhhhc-cCccCC---Cch--hcCCC
Confidence            567777664     25678888899999998887    8899999999999999999997 543321   122  23467


Q ss_pred             hhhhc--cccCCCCceEEEEecHHH-HHHhhcccc----------------ccCCCchHHHHHHHHHHHHhhcc---hhH
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEI-AQVLTKAAH----------------FNTFGGNPVGCVIASTVLDVIKD---EEL  177 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i-~~~l~~~~~----------------~~t~~~~p~~~~aa~aal~~~~~---~~~  177 (195)
                      ++++|  |.+++.-..|.++.+++. +..+.....                ....+.+...+++..++++.+.+   +.+
T Consensus       192 ~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~  271 (376)
T TIGR01977       192 MLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANI  271 (376)
T ss_pred             EEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            77665  988742224555555432 111111000                00112355667777788887754   467


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      .++.+++.+++.+.|++
T Consensus       272 ~~~~~~l~~~~~~~l~~  288 (376)
T TIGR01977       272 AKKECMLTEKLLNGLRE  288 (376)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            78888899998888864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=98.85  E-value=3.5e-08  Score=85.76  Aligned_cols=136  Identities=15%  Similarity=0.101  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+.     +++++|++|.+.+..|.+..    +++|.++|+++|+++|+||+|.. +....   ..   .+-.|
T Consensus       128 ~e~l~~~i~-----~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~-~~~~~---pl---~~GaD  191 (388)
T PRK08861        128 AAALDAALA-----KKPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFLT-PVLQK---PL---ELGAD  191 (388)
T ss_pred             HHHHHHhcC-----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCccc-cccCC---Cc---ccCCC
Confidence            455666554     36679999999999998887    88999999999999999999972 11111   11   23457


Q ss_pred             hhhh--ccccCC--CCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IVTM--AKGIAN--GFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~~~--sK~l~~--G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      +++.  +|.++|  +...|+++++ +++.+.+...........+|+.+...+..|+.+.  -.+++-.++...+.+.|+
T Consensus       192 ivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl~--lR~~~~~~~a~~~a~~L~  268 (388)
T PRK08861        192 FVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLG--ARMRVHEESAQQILAYLQ  268 (388)
T ss_pred             EEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHH
Confidence            7655  599985  3567777775 4566655433223334557887776666666553  223444445555555443

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=98.84  E-value=3.3e-08  Score=85.12  Aligned_cols=138  Identities=14%  Similarity=0.156  Sum_probs=91.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .+.++|++..+.+.+|.+.+    +++|.++|++||+++++|++|+ +|..     .........|
T Consensus       130 ~~~l~~~i~-----~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~-----~~~~~~~~~D  194 (382)
T TIGR03403       130 AEQVREAIT-----EKTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI-----PVDVQKAGVD  194 (382)
T ss_pred             HHHHHHhcc-----cCCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC-----ccCccccCCC
Confidence            566776664     24567888888999998887    8899999999999999999987 4321     1211233468


Q ss_pred             hhhhc--cccC-CCCceEEEEecHHHH--HHhhccc---cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Q psy13322        120 IVTMA--KGIA-NGFPMGAVVTTTEIA--QVLTKAA---HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQII  189 (195)
Q Consensus       120 i~~~s--K~l~-~G~~~g~v~~~~~i~--~~l~~~~---~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~  189 (195)
                      ++++|  |.+| .|  +|++..++...  ..+....   .....+.|..++.++.++++...+  +...+++++.+++|.
T Consensus       195 ~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~  272 (382)
T TIGR03403       195 FLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLE  272 (382)
T ss_pred             EEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            88777  9665 34  57776665421  1110000   011234567777777888876643  455678888999998


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       273 ~~L~~  277 (382)
T TIGR03403       273 DALLE  277 (382)
T ss_pred             HHHhc
Confidence            88864

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK14012 cysteine desulfurase; Provisional

Probab=98.84  E-value=2.6e-08  Score=86.53  Aligned_cols=139  Identities=13%  Similarity=0.124  Sum_probs=89.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.|.     .++++|++..+.+.+|.+.+    +++|.++|++||+++|+|++|+ +|..-     +......+|
T Consensus       134 ~~~l~~~i~-----~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~-----~~~~~~~~D  198 (404)
T PRK14012        134 LEKLEAAMR-----DDTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP-----IDLSKLKVD  198 (404)
T ss_pred             HHHHHHhcC-----CCCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc-----cCcccCCCC
Confidence            577777775     25668999999999998887    8999999999999999999997 43321     111134578


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhccccc------cCC-CchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHF------NTF-GGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI  188 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~------~t~-~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l  188 (195)
                      ++++|  |.+|.+ .+|+++++++....+.....+      ... ..+.....+..++++.+..  ++..++.+++.+++
T Consensus       199 ~~~~s~~K~~gp~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l  277 (404)
T PRK14012        199 LMSFSAHKIYGPK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRL  277 (404)
T ss_pred             EEEEehhhccCCC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            88886  977632 378887776532222221111      111 1233334444466655432  44667788888888


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|++
T Consensus       278 ~~~L~~  283 (404)
T PRK14012        278 WNGIKD  283 (404)
T ss_pred             HHHHhc
Confidence            887764

>PRK09028 cystathionine beta-lyase; Provisional

Probab=98.84  E-value=3.1e-08  Score=86.24  Aligned_cols=135  Identities=11%  Similarity=0.072  Sum_probs=88.0

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI  120 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi  120 (195)
                      +.+++.+.     .++++|++|.+.+..|.+..    +++|.++|++||+++|+|++|+. +. .     +....+-.|+
T Consensus       137 e~l~~~l~-----~~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~-p~-~-----~~Pl~~GaDi  200 (394)
T PRK09028        137 EGIRELIR-----PNTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWAS-PI-N-----SRPFEMGVDI  200 (394)
T ss_pred             HHHHHhcC-----cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCccc-cc-c-----CCccccCceE
Confidence            45666554     36779999999998887755    99999999999999999999972 11 1     1112344577


Q ss_pred             hhh--ccccCC--CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        121 VTM--AKGIAN--GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       121 ~~~--sK~l~~--G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++.  .|.++|  ....|+++.++++.+.+...........+|+.+...+..|+.+.  -.+++-.++...+.+.|+
T Consensus       201 vv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~--lR~~~~~~na~~la~~L~  275 (394)
T PRK09028        201 SIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLG--VRLAQHEKNALKVANWLA  275 (394)
T ss_pred             EEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHh
Confidence            755  499974  35667777777766655433222223457777776666666542  234555555555655554

>PRK07050 cystathionine beta-lyase; Provisional

Probab=98.80  E-value=4.9e-08  Score=84.96  Aligned_cols=135  Identities=18%  Similarity=0.175  Sum_probs=83.4

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI  120 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi  120 (195)
                      +.+++.+.     .++++|++|...+..|.    ...+++|.++|++||+++|+|++|+ .+..-.   +.. .|  .|+
T Consensus       141 ~~l~~~i~-----~~tklV~le~p~Np~~~----~~di~~I~~ia~~~gi~livD~a~a-~~~~~~---~l~-~G--aDi  204 (394)
T PRK07050        141 AGIADLIQ-----PNTRLIWLEAPGSVTME----VPDVPAITAAARARGVVTAIDNTYS-AGLAFK---PFE-HG--VDI  204 (394)
T ss_pred             HHHHHhcC-----CCCeEEEEECCCCCCcc----HhhHHHHHHHHHHcCCEEEEECCcc-cccccC---HHH-cC--CeE
Confidence            45555554     36778999988776654    4449999999999999999999987 222111   111 23  365


Q ss_pred             h--hhccccCCC--CceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        121 V--TMAKGIANG--FPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       121 ~--~~sK~l~~G--~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      +  .++|.+++|  .++|++++ ++++.+.++........+.+|+.+..++..|+.+  ...+++..++...+.+.|.
T Consensus       205 ~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl--~~Rl~~~~~~a~~la~~L~  280 (394)
T PRK07050        205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSL--QVRLAAHDRSALEVAEWLK  280 (394)
T ss_pred             EEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHH
Confidence            5  457999854  46787776 5677776654332223345666655444433333  2244555565556666554

>PRK05968 hypothetical protein; Provisional

Probab=98.79  E-value=6e-08  Score=84.28  Aligned_cols=136  Identities=16%  Similarity=0.054  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+++++.+.      ++.+|++|.+.+..+.+    ..+++|.++|++||+++|+|++|+.. ....   ... .|  .|
T Consensus       138 ~~~l~~~i~------~tklV~ie~pt~~~~~~----~dl~~i~~la~~~gi~vivD~a~a~~-~~~~---p~~-~g--~D  200 (389)
T PRK05968        138 EEAVAKALP------GAKLLYLESPTSWVFEL----QDVAALAALAKRHGVVTMIDNSWASP-VFQR---PIT-LG--VD  200 (389)
T ss_pred             HHHHHHhcc------cCCEEEEECCCCCCCcH----HHHHHHHHHHHHcCCEEEEECCCcch-hccC---chh-cC--Cc
Confidence            456666542      34578889876654444    45999999999999999999998632 2222   111 23  36


Q ss_pred             hhh--hccccCC-C-CceEEEEecHHHHHHhhcccc-ccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVT--MAKGIAN-G-FPMGAVVTTTEIAQVLTKAAH-FNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~--~sK~l~~-G-~~~g~v~~~~~i~~~l~~~~~-~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++  ++|.+++ | ..+|++++++++++.+..... ......+|+.++.++..|+.+  ....++-.++.+++.+.|++
T Consensus       201 ivv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl--~~r~~~~~~~a~~la~~L~~  278 (389)
T PRK05968        201 LVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL--PLRMKAHEASALEIARRLKA  278 (389)
T ss_pred             EEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHHh
Confidence            554  4699984 3 567888888888777654321 112345677777777777665  33445555566666666653

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=98.78  E-value=3.9e-08  Score=86.17  Aligned_cols=85  Identities=20%  Similarity=0.172  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     +++++|++|++.+..|.+.+    +++|+++|++||+++|+||+++ .+...      ......+|
T Consensus       132 ~~~l~~~l~-----~~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~-~~~~~------~~l~~g~D  195 (418)
T TIGR01326       132 PEEFEKAID-----ENTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFA-TPYLC------RPIDHGAD  195 (418)
T ss_pred             HHHHHHhcC-----cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-hhhcC------CchhcCCe
Confidence            567777664     35678999999888897776    9999999999999999999986 22211      11223457


Q ss_pred             hh--hhccccCC-CCceEEEEecH
Q psy13322        120 IV--TMAKGIAN-GFPMGAVVTTT  140 (195)
Q Consensus       120 i~--~~sK~l~~-G~~~g~v~~~~  140 (195)
                      ++  +++|.+++ |+++|++++++
T Consensus       196 ivv~S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       196 IVVHSATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             EEEECccccccCCccceEEEEEec
Confidence            66  66799994 89999988854

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=98.77  E-value=7.6e-08  Score=84.72  Aligned_cols=138  Identities=20%  Similarity=0.228  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEE--eccccCccccCCCcccccccCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFIS--DEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~--DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ++++|++.+.     +++++|++... +..|.+.+    +++|.++|+++|+++|+  |.+.  +|....    ..  ..
T Consensus       193 d~~~l~~~i~-----~~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~--~g~~~~----~~--~~  254 (447)
T PRK00451        193 DLEALEAAVD-----DDTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVS--LGLLKP----PG--EY  254 (447)
T ss_pred             CHHHHHHhcC-----CCeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHH--hccCCC----cc--cC
Confidence            3677777664     36778888775 77898866    99999999999999998  5442  221111    11  22


Q ss_pred             Ccchhh-----hccccC-CCCceEEEEecHHHHHHhhc---------------------------cc-cccCCCchH-HH
Q psy13322        117 SPDIVT-----MAKGIA-NGFPMGAVVTTTEIAQVLTK---------------------------AA-HFNTFGGNP-VG  161 (195)
Q Consensus       117 ~pdi~~-----~sK~l~-~G~~~g~v~~~~~i~~~l~~---------------------------~~-~~~t~~~~p-~~  161 (195)
                      ..|+++     +||.++ +|+.+|++.+++++.+.+..                           .. ...+++.+. +.
T Consensus       255 ~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (447)
T PRK00451        255 GADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALN  334 (447)
T ss_pred             CCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHH
Confidence            445553     567776 78889999998888776411                           00 111222222 22


Q ss_pred             HHHHHHHHHhhcc---hhHHHHHHHHHHHHHHHhhc
Q psy13322        162 CVIASTVLDVIKD---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       162 ~~aa~aal~~~~~---~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ..++.++++.+.+   ++..+++.++++++.+.|++
T Consensus       335 ~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~  370 (447)
T PRK00451        335 ALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAE  370 (447)
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2333344554422   56778899999999999875

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=98.76  E-value=2.2e-08  Score=84.69  Aligned_cols=132  Identities=13%  Similarity=-0.005  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-
Q psy13322         39 FYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-  116 (195)
                      ++++|++.+.+.... .+..+|++....+..|.+.+    +++|.++|++||+++++|++|+++.......... ..++ 
T Consensus       131 d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~  205 (345)
T cd06450         131 DPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL-DFGIE  205 (345)
T ss_pred             CHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH-hcCcc
Confidence            467888888652111 14556666655667888755    9999999999999999999998543221101000 0111 


Q ss_pred             Ccchh--hhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        117 SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       117 ~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ..|.+  +++|.+++++.+|+++.+                   .+++.+++..+....-++..++..++.+++.+.|++
T Consensus       206 ~~d~~~~s~~K~l~~p~g~g~~~~~-------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~  266 (345)
T cd06450         206 RVDSISVDPHKYGLVPLGCSAVLVR-------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRA  266 (345)
T ss_pred             ccCEEEEchhHhhCCCcchHHHHHH-------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34544  456988766556655444                   333333333333222256778888888899888865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK07671 cystathionine beta-lyase; Provisional

Probab=98.74  E-value=1.2e-07  Score=82.08  Aligned_cols=136  Identities=17%  Similarity=0.091  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+.     .++++|++|...+..|....    +++|.++|+++|+++|+||++.. +..+. .  .   ....|
T Consensus       124 ~~~l~~ai~-----~~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~-~~~~~-p--~---~~g~D  187 (377)
T PRK07671        124 LEEVEEAIR-----PNTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMT-PYWQS-P--I---SLGAD  187 (377)
T ss_pred             HHHHHHhcC-----CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCc-cccCC-h--h---hhCCe
Confidence            566666664     36779999999888887765    99999999999999999999863 22222 1  1   22346


Q ss_pred             hhh--hccccCC-C-CceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IVT--MAKGIAN-G-FPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~~--~sK~l~~-G-~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      +++  ++|.++| + .-.|++++ ++++++.+........-..+|..+..++..++.+.  -.+++..++...|.+.|+
T Consensus       188 ivv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~tl~--~R~~~~~~na~~la~~L~  264 (377)
T PRK07671        188 IVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLG--IRMEEHETNSRAIAEFLN  264 (377)
T ss_pred             EEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcChHH--HHHHHHHHHHHHHHHHHH
Confidence            664  4699983 2 33455555 45677766543222222345666665555554442  244556666666666665

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=98.73  E-value=2.3e-07  Score=80.02  Aligned_cols=133  Identities=12%  Similarity=0.088  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc--cCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR--TGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr--~G~~~~~~~~~~~~  117 (195)
                      +++|++.+..     ++++|++-   +..|....    +++|.++|++||++||.|++|+ +|.  .|+ .  .   |--
T Consensus       109 ~~~le~~i~~-----~tk~i~~~---~~~G~~~~----~~~i~~la~~~~i~vIeD~a~a-~g~~~~~~-~--~---g~~  169 (375)
T PRK11706        109 ETLIEAAITP-----KTRAIVPV---HYAGVACE----MDTIMALAKKHNLFVVEDAAQG-VMSTYKGR-A--L---GTI  169 (375)
T ss_pred             HHHHHHhcCC-----CCeEEEEe---CCCCCccC----HHHHHHHHHHcCCEEEEECccc-cccccCCe-e--e---ecC
Confidence            5777777652     44555532   34676554    8899999999999999999998 443  222 1  1   212


Q ss_pred             cchhhhc----cccCCCCceEEEEecHHHHHHhhccc-c--------------------ccCCCchHHHHHHHHHHHHhh
Q psy13322        118 PDIVTMA----KGIANGFPMGAVVTTTEIAQVLTKAA-H--------------------FNTFGGNPVGCVIASTVLDVI  172 (195)
Q Consensus       118 pdi~~~s----K~l~~G~~~g~v~~~~~i~~~l~~~~-~--------------------~~t~~~~p~~~~aa~aal~~~  172 (195)
                      -|+.+||    |.+++|..+++++.++++.+.+.... +                    ++++-.+.+.++.+++-|+.+
T Consensus       170 ~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l  249 (375)
T PRK11706        170 GHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAA  249 (375)
T ss_pred             cCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHH
Confidence            3677777    99986655566666777776443221 1                    112222345555556666655


Q ss_pred             cchhHHHHHHHHHHHHHHHhh
Q psy13322        173 KDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       173 ~~~~~~~~l~~~~~~l~~~L~  193 (195)
                        ++..++-+++.+++.+.|.
T Consensus       250 --~~~~~~R~~~~~~~~~~L~  268 (375)
T PRK11706        250 --DRINQRRLALWQRYYDALA  268 (375)
T ss_pred             --HHHHHHHHHHHHHHHHHhc
Confidence              3344445555555555554

>PRK08064 cystathionine beta-lyase; Provisional

Probab=98.72  E-value=1.4e-07  Score=82.01  Aligned_cols=136  Identities=16%  Similarity=0.090  Sum_probs=85.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     .++++|++|...+..|.+.+    +++|.++|+++|+++|+||++... ....   ..   ....|
T Consensus       128 ~~~l~~~l~-----~~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~---~~---~~g~D  191 (390)
T PRK08064        128 LEEVAQNIK-----PNTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTP-LLQK---PL---DLGAD  191 (390)
T ss_pred             HHHHHHhcC-----CCceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcc-cccC---ch---hhCCc
Confidence            455665554     36779999999999998776    999999999999999999998632 1111   11   12346


Q ss_pred             hhhh--ccccCC--CCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IVTM--AKGIAN--GFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~~~--sK~l~~--G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      +++.  +|.++|  |...|+++++ +++.+.+...........+|..+..++..++.+  ...+++..++...+.+.|+
T Consensus       192 ivv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~tl--~~R~~~~~~~a~~la~~L~  268 (390)
T PRK08064        192 VVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTL--HVRLEHSSETANKIALYLQ  268 (390)
T ss_pred             EEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHh
Confidence            6644  699973  3445666654 577777765433333344556555444444332  3344555666666666654

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.72  E-value=2.1e-07  Score=81.81  Aligned_cols=83  Identities=19%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.+.     .++++|++|++.+..|.+.+    +++|.++|++||+++|+|++|+ .+..      .....+.+|
T Consensus       138 ~~~l~~ai~-----~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a-~~~~------~~pl~~gaD  201 (427)
T PRK05994        138 PASFERAIT-----PRTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLA-SPYL------IRPIEHGAD  201 (427)
T ss_pred             HHHHHHhcC-----cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCcc-cccc------CCccccCCc
Confidence            466666664     36779999999999998887    9999999999999999999997 2221      122345678


Q ss_pred             hhhh--ccccCC-CCceEEEEe
Q psy13322        120 IVTM--AKGIAN-GFPMGAVVT  138 (195)
Q Consensus       120 i~~~--sK~l~~-G~~~g~v~~  138 (195)
                      +++.  +|.+++ |-.+|.++.
T Consensus       202 ivv~S~tK~lgg~~~~~gG~v~  223 (427)
T PRK05994        202 IVVHSLTKFLGGHGNSMGGIIV  223 (427)
T ss_pred             EEEEcCccccCCCCCcEEEEEE
Confidence            7754  599984 434554443

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=98.70  E-value=1.7e-07  Score=81.28  Aligned_cols=135  Identities=16%  Similarity=0.043  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     +++++|++|...+..|.+..    +++|.++|++||+++|+|++++.. ..+. .     .+...|
T Consensus       124 ~e~l~~ai~-----~~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~~~~-p-----~~~gaD  187 (380)
T PRK06176        124 LSQIKKAIK-----PNTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-YYQN-P-----LLLGAD  187 (380)
T ss_pred             HHHHHHhcC-----cCceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-ccCC-c-----cccCCC
Confidence            456666554     36789999999888898776    999999999999999999998732 2222 1     133457


Q ss_pred             hhhh--ccccCC-C-CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322        120 IVTM--AKGIAN-G-FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       120 i~~~--sK~l~~-G-~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L  192 (195)
                      ++++  +|.+++ | .-.|+++++ +++.+.+...........+|..+......++.+.  -.+++..++...+.+.|
T Consensus       188 ivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~tl~--~R~~~~~~~a~~la~~L  263 (380)
T PRK06176        188 IVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLG--LRMEAHQKNALCVAEFL  263 (380)
T ss_pred             EEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHH
Confidence            7766  499974 3 345667764 4566655432221112234555444444443331  12333344444444444

>KOG0633|consensus

Probab=98.69  E-value=2.2e-07  Score=75.81  Aligned_cols=145  Identities=18%  Similarity=0.232  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+-+.++..   ..++++.+-+.-+.+|..+- .+.+.++.+.=.  +.++++||+|-.|.-.+.   ....-.-.|.
T Consensus       148 vdai~evl~~d---s~iK~~F~tSPgNPtg~~ik-~~di~KiLe~p~--nglVVvDEAYidFsg~~S---~~~lV~kYpN  218 (375)
T KOG0633|consen  148 VDAIAEVLELD---SKIKCIFLTSPGNPTGSIIK-EDDILKILEMPD--NGLVVVDEAYIDFSGVES---RMKLVKKYPN  218 (375)
T ss_pred             HHHHHHHHhcc---ccceEEEEcCCCCCCccccc-HHHHHHHHhCCC--CcEEEEeeeeEeeccccc---cchHhHhCCc
Confidence            45566666643   37888888888788887665 344544444333  799999999987732222   1122233555


Q ss_pred             hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh--hcc-hhHHHHHHHHHHHHHHHh
Q psy13322        120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV--IKD-EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~--~~~-~~~~~~l~~~~~~l~~~L  192 (195)
                      ++   |+||++| .|+++|+...+.++++.+......+.  -+..+-.+|++||.-  +.. ++.++.+-+.+.+|...|
T Consensus       219 LivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~KaPYN--iS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keL  296 (375)
T KOG0633|consen  219 LIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAKAPYN--ISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKEL  296 (375)
T ss_pred             eeehhhhhhhcCcceeEeecccccHHHHHHHHhccCCcc--ccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHh
Confidence            43   7899999 99999999999999998876543332  244556667777762  222 566677777777777777


Q ss_pred             hcC
Q psy13322        193 RVV  195 (195)
Q Consensus       193 ~~l  195 (195)
                      .++
T Consensus       297 t~v  299 (375)
T KOG0633|consen  297 TEV  299 (375)
T ss_pred             hcC
Confidence            653

>PRK05939 hypothetical protein; Provisional

Probab=98.69  E-value=1.6e-07  Score=81.88  Aligned_cols=84  Identities=21%  Similarity=0.262  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     +++++|++|.+.+..|.+.+    +++|.++|++||+++|+|++|+....       +.......|
T Consensus       121 ~e~l~~~l~-----~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a~~~~-------~~~~~~gaD  184 (397)
T PRK05939        121 VQNVAAAIR-----PNTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMTSPWL-------FRPKDVGAS  184 (397)
T ss_pred             HHHHHHhCC-----CCCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCcccccc-------cCccccCCE
Confidence            566776664     36778999999999998765    99999999999999999999852111       111122345


Q ss_pred             hh--hhccccCC-CCceEEEEec
Q psy13322        120 IV--TMAKGIAN-GFPMGAVVTT  139 (195)
Q Consensus       120 i~--~~sK~l~~-G~~~g~v~~~  139 (195)
                      ++  +++|.+++ |..+|+++..
T Consensus       185 ivv~S~sK~~~g~g~~igg~v~~  207 (397)
T PRK05939        185 LVINSLSKYIAGHGNALGGAVTD  207 (397)
T ss_pred             EEEecCeecccCCCCeEEEEEec
Confidence            54  56799994 7877777664

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=98.69  E-value=4e-07  Score=78.82  Aligned_cols=90  Identities=17%  Similarity=0.173  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc--cCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR--TGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr--~G~~~~~~~~~~~~  117 (195)
                      ++++++.+.     .++++|+  |+ ...|....    +++|.++|++||++||.|++|+ +|.  .|+      ..|..
T Consensus       109 ~~~le~~i~-----~~tk~Ii--p~-~~~G~~~d----~~~I~~la~~~~i~vIeDaa~~-~g~~~~~~------~~g~~  169 (376)
T TIGR02379       109 ETLIESAIT-----HRTKAIV--PV-HYAGVACD----MDTIMALANKHQLFVIEDAAQG-VMSTYKGR------ALGSI  169 (376)
T ss_pred             HHHHHHhcC-----cCceEEE--Ee-CCCCCccC----HHHHHHHHHHCCCEEEEECccc-cCCccCCc------ccCCC
Confidence            466777665     2455665  22 34676555    8899999999999999999998 432  232      12323


Q ss_pred             cchhhhc----cccCCCCceEEEEec-HHHHHHhhc
Q psy13322        118 PDIVTMA----KGIANGFPMGAVVTT-TEIAQVLTK  148 (195)
Q Consensus       118 pdi~~~s----K~l~~G~~~g~v~~~-~~i~~~l~~  148 (195)
                      -|+.+||    |.+++|..+|+++++ +++.+.++.
T Consensus       170 ~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~  205 (376)
T TIGR02379       170 GHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEI  205 (376)
T ss_pred             CCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHH
Confidence            3777887    999877678888876 577776653

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=98.65  E-value=1.3e-07  Score=71.10  Aligned_cols=78  Identities=18%  Similarity=0.193  Sum_probs=60.5

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccCCCC
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIANGF  131 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~~G~  131 (195)
                      .++++|++++..+++|...+    +++|+++|+++|+++|+||+|.++..... .  .......+|+++.|  |.|++ .
T Consensus        91 ~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~-~--~~~~~~~~d~~~~s~~K~~~~-~  162 (170)
T cd01494          91 PNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAP-G--VLIPEGGADVVTFSLHKNLGG-E  162 (170)
T ss_pred             CceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEeccccccccccc-c--cccccccCCEEEEEcccccCC-C
Confidence            48899999999999998776    69999999999999999999997655432 1  11123457888887  99986 5


Q ss_pred             ceEEEEec
Q psy13322        132 PMGAVVTT  139 (195)
Q Consensus       132 ~~g~v~~~  139 (195)
                      ++|+++++
T Consensus       163 ~~G~l~~~  170 (170)
T cd01494         163 GGGVVIVK  170 (170)
T ss_pred             ceEEEEeC
Confidence            67887753

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=6.7e-07  Score=78.17  Aligned_cols=139  Identities=16%  Similarity=0.260  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++++.     +++.+|.+.-+.+..|.+.+    +++|.++|+++|+++++|=+|+ ++.     ....-..+..|
T Consensus       152 ~~~~~~~i~-----~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h-----~~idv~~l~~D  216 (405)
T COG0520         152 LDALEKLIT-----PKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-AGH-----LPIDVQELGCD  216 (405)
T ss_pred             HHHHHHhcC-----CCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc-cCc-----cCCCchhcCCC
Confidence            455665443     47889999999999999998    9999999999999999999987 422     12322345678


Q ss_pred             hhhhc--cccC--CCCceEEEEecHHHHHHhhccc------------cccCC----------CchHHHHHHHHHHHHhhc
Q psy13322        120 IVTMA--KGIA--NGFPMGAVVTTTEIAQVLTKAA------------HFNTF----------GGNPVGCVIASTVLDVIK  173 (195)
Q Consensus       120 i~~~s--K~l~--~G~~~g~v~~~~~i~~~l~~~~------------~~~t~----------~~~p~~~~aa~aal~~~~  173 (195)
                      +++||  |.|.  +|  +|.+.+++++.+.+.+..            ...++          ..|..+..+..++++.++
T Consensus       217 f~afsgHKwl~gP~G--iGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~  294 (405)
T COG0520         217 FLAFSGHKWLLGPTG--IGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLL  294 (405)
T ss_pred             EEEEcccccccCCCc--eEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHH
Confidence            99998  9665  46  899999999988874321            00111          123445555567777665


Q ss_pred             c---hhHHHHHHHHHHHHHHHhhcC
Q psy13322        174 D---EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       174 ~---~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      +   +++.++.++..+++.+.|+++
T Consensus       295 ~ig~~~i~~~e~~L~~~~~~~L~~~  319 (405)
T COG0520         295 EIGMEAIEAHERELTEYLLEGLSEL  319 (405)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            4   567788889999999988764

>PRK05967 cystathionine beta-lyase; Provisional

Probab=98.63  E-value=3.8e-07  Score=79.43  Aligned_cols=135  Identities=11%  Similarity=0.037  Sum_probs=83.3

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI  120 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi  120 (195)
                      +.+++.+.     .++++|++|++.+..+.+.+    +++|.++|+++|+++|+|++++....       +....+-.|+
T Consensus       140 e~l~~al~-----~~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD~t~a~p~~-------~~pl~~GaDi  203 (395)
T PRK05967        140 AGIAKLMR-----PNTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMDNTWATPLY-------FRPLDFGVDI  203 (395)
T ss_pred             HHHHHhcC-----cCceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEECCccCcee-------cChhHcCCCE
Confidence            45666654     35779999998887665444    99999999999999999999873211       1111233565


Q ss_pred             h--hhccccCC--CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        121 V--TMAKGIAN--GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       121 ~--~~sK~l~~--G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      +  ..+|.++|  ...+|+++.++++.+.+...........+|+.+...+..|+.+.  -.+++-.++...+.+.|+
T Consensus       204 vv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~Tl~--lR~~~~~~na~~lA~~L~  278 (395)
T PRK05967        204 SIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMG--IRLEHHRKSALEIARWLE  278 (395)
T ss_pred             EEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcccHH--HHHHHHHHHHHHHHHHHH
Confidence            5  44699985  35677777777665555422222223356777666665555542  223444445555544443

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=98.62  E-value=8.7e-07  Score=76.64  Aligned_cols=135  Identities=21%  Similarity=0.217  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++++.+.     .++++|+  |+ ...|....    +++|.++|++||+++|+|++|+ |....|. .  ....+.  
T Consensus       111 ~~~l~~~i~-----~~tkav~--~~-~~~G~~~d----~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~-~--~g~~g~--  173 (379)
T PRK11658        111 PEAIEAAIT-----PRTKAII--PV-HYAGAPAD----LDAIRAIGERYGIPVIEDAAHAVGTYYKGR-H--IGARGT--  173 (379)
T ss_pred             HHHHHHhcc-----cCCeEEE--Ee-CCCCCcCC----HHHHHHHHHHcCCeEEEECCCccCCeECCe-e--cCCCCC--
Confidence            567777665     2455665  22 23566554    8899999999999999999998 3333332 1  112233  


Q ss_pred             chhhhc--cccCCCCceEEEEec-HHHHHHhhccc-cc-----------------------cCCCchHHHHHHHHHHHHh
Q psy13322        119 DIVTMA--KGIANGFPMGAVVTT-TEIAQVLTKAA-HF-----------------------NTFGGNPVGCVIASTVLDV  171 (195)
Q Consensus       119 di~~~s--K~l~~G~~~g~v~~~-~~i~~~l~~~~-~~-----------------------~t~~~~p~~~~aa~aal~~  171 (195)
                      ++.+|+  |.+++ ..+|+++++ +++.+.++... ++                       +.+..+.+..+.++..++.
T Consensus       174 ~~~Sf~~~K~l~~-g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~  252 (379)
T PRK11658        174 AIFSFHAIKNITC-AEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAK  252 (379)
T ss_pred             EEEeCCCCCcCcc-cCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHH
Confidence            566665  77754 356777775 56666554321 11                       1111233444444444443


Q ss_pred             hcchhHHHHHHHHHHHHHHHhhc
Q psy13322        172 IKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       172 ~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +  ++..++-+++.+++.+.|+.
T Consensus       253 l--~~~~~~r~~~a~~~~~~L~~  273 (379)
T PRK11658        253 L--EALNARRREIAARYLQALAD  273 (379)
T ss_pred             H--HHHHHHHHHHHHHHHHHhcC
Confidence            3  44556666777777777654

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.62  E-value=4.1e-07  Score=80.26  Aligned_cols=83  Identities=18%  Similarity=0.097  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     .++++|++|.+.++.|.+.+    +++|.++|++||+++|+|++|+ .+....   .   .....|
T Consensus       145 ~e~l~~ai~-----~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a-~~~~~~---p---l~~GaD  208 (436)
T PRK07812        145 LDAWRAAVR-----PNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIA-TPYLIR---P---LEHGAD  208 (436)
T ss_pred             HHHHHHhCC-----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccCC---c---hhcCCC
Confidence            566666554     35779999999999999888    9999999999999999999986 222111   1   123456


Q ss_pred             hhh--hccccCC-C-CceEEEEe
Q psy13322        120 IVT--MAKGIAN-G-FPMGAVVT  138 (195)
Q Consensus       120 i~~--~sK~l~~-G-~~~g~v~~  138 (195)
                      +++  ++|.+++ | .-.|.++.
T Consensus       209 ivv~S~tK~lgg~G~~i~G~vv~  231 (436)
T PRK07812        209 IVVHSATKYLGGHGTAIAGVIVD  231 (436)
T ss_pred             EEEEecccccCCCCCeEEEEEEc
Confidence            654  4699983 3 34444443

>PRK08114 cystathionine beta-lyase; Provisional

Probab=98.60  E-value=4e-07  Score=79.27  Aligned_cols=136  Identities=14%  Similarity=0.100  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC--CEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN--GLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~--~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      .+.+++.|+     +++++|++|++.++.|.+.+    +++|.++|+++|  +++|+|.+++ .   |. .  +.-..+-
T Consensus       137 ~~~l~~~l~-----~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a-~---p~-~--~~pl~~G  200 (395)
T PRK08114        137 GADIAKLIQ-----PNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA-A---GV-L--FKALDFG  200 (395)
T ss_pred             HHHHHHhcC-----CCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc-c---cc-c--cCHHHcC
Confidence            356777665     36789999999999999988    999999999984  9999999986 2   21 1  2223345


Q ss_pred             cchhhhc--cccCCC--CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        118 PDIVTMA--KGIANG--FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       118 pdi~~~s--K~l~~G--~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      .|+++.|  |.++|.  .-+|.++.++++.+.+...........+|+.+...+..|+.+.  -.+++-.++...+.+.|+
T Consensus       201 aDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~--lR~~~~~~na~~va~~L~  278 (395)
T PRK08114        201 IDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLG--VRLRQHEESSLKVAEWLA  278 (395)
T ss_pred             CcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHH
Confidence            6777665  999853  4667777777665555432222222446777776666665542  234555555555555554

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.54  E-value=8.1e-07  Score=78.26  Aligned_cols=83  Identities=22%  Similarity=0.173  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+.     +++++|++|.+.+..|.+..    +++|.++|++||+++|+|++++ .+....   ..   ....|
T Consensus       139 ~e~l~~ai~-----~~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a-~~~~~~---pl---~~gaD  202 (431)
T PRK08248        139 PENFEAAIT-----DKTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA-SPYLLR---PI---EHGAD  202 (431)
T ss_pred             HHHHHHhcC-----CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC-ccccCC---hh---HcCCC
Confidence            566666664     35778999988888898887    8999999999999999999976 211111   11   23456


Q ss_pred             hhhh--ccccC-CCCceEEEEe
Q psy13322        120 IVTM--AKGIA-NGFPMGAVVT  138 (195)
Q Consensus       120 i~~~--sK~l~-~G~~~g~v~~  138 (195)
                      +++.  +|.++ .|.++|++++
T Consensus       203 ivv~S~tK~lgg~g~~~Gg~v~  224 (431)
T PRK08248        203 IVVHSATKFIGGHGTSIGGVIV  224 (431)
T ss_pred             EEEEcCccccCCCCCceEEEEE
Confidence            6654  59999 4666666555

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=98.54  E-value=7.9e-07  Score=76.52  Aligned_cols=139  Identities=18%  Similarity=0.181  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|++.|.     +++..|-+--+.++.|.+.|    +++|.++|+++++++.+|=||+ +|+.-     .....+..
T Consensus       130 ~~e~L~~al~-----~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip-----i~~~~~~v  194 (386)
T COG1104         130 DLEQLEEALR-----PDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP-----IDLEELGV  194 (386)
T ss_pred             cHHHHHHhcC-----CCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCcee-----ccccccCc
Confidence            3688888877     46778999999999999999    9999999999999999999998 75542     22222347


Q ss_pred             chhhhc--cccC-CCCceEEEEecHHHHH-Hhhcc-c--cccCC-CchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322        119 DIVTMA--KGIA-NGFPMGAVVTTTEIAQ-VLTKA-A--HFNTF-GGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI  188 (195)
Q Consensus       119 di~~~s--K~l~-~G~~~g~v~~~~~i~~-~l~~~-~--~~~t~-~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l  188 (195)
                      |+++||  |-.| .|  +|++..++.+.- .+... .  .+.-. ..|..+.++..+|++...+  +....++.+.+++|
T Consensus       195 D~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l  272 (386)
T COG1104         195 DLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRL  272 (386)
T ss_pred             ceEEeehhhccCCCc--eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899997  6555 45  777777654321 11111 1  11111 1266677777777776532  56778899999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|.+
T Consensus       273 ~~~l~~  278 (386)
T COG1104         273 EDGLLE  278 (386)
T ss_pred             HHHHHh
Confidence            998874

>KOG0634|consensus

Probab=98.53  E-value=2.7e-06  Score=73.48  Aligned_cols=153  Identities=15%  Similarity=0.092  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhcCCC----CCeE-EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc---CC-----
Q psy13322         40 YEQLVNAFQYNVPI----TGAA-ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT---GD-----  106 (195)
Q Consensus        40 ~~~l~~~l~~~~~~----~~~a-avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~---G~-----  106 (195)
                      .|.|++.+.+..+.    .+.. .--|=+-|+.+|... +.+-=++|.+|++|||+++|-||+|-=+-+.   +.     
T Consensus       184 pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tl-s~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~  262 (472)
T KOG0634|consen  184 PESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTL-SLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELES  262 (472)
T ss_pred             HHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCcc-CHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccC
Confidence            68888888764332    1222 333444677889654 5677899999999999999999999743222   11     


Q ss_pred             Cccc-----------ccccCCCc---chhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh
Q psy13322        107 NYWG-----------FEMHGVSP---DIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI  172 (195)
Q Consensus       107 ~~~~-----------~~~~~~~p---di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~  172 (195)
                      ..+.           +...+..-   ..-+|||-++.|+|+||+.+++.+++.....+...|.+.+-+++....+.|+..
T Consensus       263 p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~w  342 (472)
T KOG0634|consen  263 PAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRW  342 (472)
T ss_pred             ccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHH
Confidence            0011           00011111   234889999999999999999987777666666667777788888888999877


Q ss_pred             cchh-------HHHHHHHHHHHHHHHhh
Q psy13322        173 KDEE-------LQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       173 ~~~~-------~~~~l~~~~~~l~~~L~  193 (195)
                      .+++       ++..+..++..+...|+
T Consensus       343 gqeG~~~wi~~l~~~Yt~Rrn~~l~Al~  370 (472)
T KOG0634|consen  343 GQEGFLRWIQHLRSSYTERRNALLSALD  370 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5543       33444455555555544

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=98.53  E-value=3.1e-06  Score=73.01  Aligned_cols=138  Identities=17%  Similarity=0.167  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc--ccCCCcccccccCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG--RTGDNYWGFEMHGV  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g--r~G~~~~~~~~~~~  116 (195)
                      +++++++.+.+..+ .++.+|++-   +..|...+    +++|.++|++||++||.|++|+ +|  +.|+      ..|.
T Consensus       106 d~~~l~~~i~~~~~-~~t~~v~~~---~~~G~~~~----~~~i~~l~~~~~~~lI~D~a~a-~g~~~~~~------~~g~  170 (380)
T TIGR03588       106 DEDALEKKLAAAKG-KLPKAIVPV---DFAGKSVD----MQAIAALAKKHGLKIIEDASHA-LGAEYGGK------PVGN  170 (380)
T ss_pred             CHHHHHHHhhcccC-CCceEEEEe---CCCCccCC----HHHHHHHHHHcCCEEEEECCCc-ccCccCCE------eCCC
Confidence            36788888874321 245566532   23565554    8999999999999999999998 43  2222      1222


Q ss_pred             --Ccchhhhc----cccCCCCceEEEEec-HHHHHHhhccc-c------------------------ccCCCchHHHHHH
Q psy13322        117 --SPDIVTMA----KGIANGFPMGAVVTT-TEIAQVLTKAA-H------------------------FNTFGGNPVGCVI  164 (195)
Q Consensus       117 --~pdi~~~s----K~l~~G~~~g~v~~~-~~i~~~l~~~~-~------------------------~~t~~~~p~~~~a  164 (195)
                        --|+.++|    |.+++| .+|++++. +++.+.++... +                        ++.+..+.+..+.
T Consensus       171 ~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~  249 (380)
T TIGR03588       171 CRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAAL  249 (380)
T ss_pred             ccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHH
Confidence              33777765    888744 35666664 55666543210 0                        0112224455555


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        165 ASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       165 a~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++.|+.+  ++..++-+++.+++.+.|..
T Consensus       250 g~~qL~~l--~~~~~~r~~~~~~~~~~L~~  277 (380)
T TIGR03588       250 GLSQLKKL--DRFVAKRREIAARYDRLLKD  277 (380)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence            55556554  45667777778888887764

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK04311 selenocysteine synthase; Provisional

Probab=98.50  E-value=2.1e-06  Score=76.30  Aligned_cols=99  Identities=18%  Similarity=0.142  Sum_probs=64.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCC--CCC--cccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-----Cccc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQG--VSG--VKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-----NYWG  110 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s--~~G--~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-----~~~~  110 (195)
                      ++++++.|.     .++++|+++...+  +.|  ..++    +++|.++|++||+++|+|....-++-.+.     ....
T Consensus       206 ~~dle~aI~-----~~TklV~~vh~sN~~i~G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~  276 (464)
T PRK04311        206 LRDYEQAIN-----ENTALLLKVHTSNYRIEGFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTV  276 (464)
T ss_pred             HHHHHHhcC-----ccCeEEEEEcCCCccccccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCch
Confidence            567777775     2566777776543  445  3344    99999999999999999985322221111     0000


Q ss_pred             ccccCCCcchhhhc--cccCCCCceEEEEecHHHHHHhhc
Q psy13322        111 FEMHGVSPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTK  148 (195)
Q Consensus       111 ~~~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~  148 (195)
                      ......-.|++++|  |.++|. ..|++++++++++.+.+
T Consensus       277 ~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~~~li~~l~~  315 (464)
T PRK04311        277 QELLAAGVDLVTFSGDKLLGGP-QAGIIVGKKELIARLKK  315 (464)
T ss_pred             hhHHhcCCcEEEecCcccccCC-ceEEEEEcHHHHHHHhh
Confidence            11122456899997  999854 37888899998887764

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=98.47  E-value=4.4e-06  Score=73.70  Aligned_cols=153  Identities=11%  Similarity=-0.028  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc-----------ccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG-----------RTGDN  107 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g-----------r~G~~  107 (195)
                      +++.|++.|.+..+ .+++.|.++-..+..|-.+.+.+.++++.++|++||+.||.|=++. +|           +.|+.
T Consensus       162 D~d~Le~~I~~~~~-~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~~~  239 (460)
T PRK13237        162 DLDKLQALIDEVGA-ENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREEGYQDKS  239 (460)
T ss_pred             CHHHHHHHhccccC-CccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhcccccccCCCc
Confidence            36888998875433 3555555555445554466777889999999999999999999987 44           11110


Q ss_pred             ccc-ccccCCCcchhhhc--cccCCCCceEEEEec-HHHHHHhhccc--c-c-cCCCchHH-HHHHHHHHHHhhcchhHH
Q psy13322        108 YWG-FEMHGVSPDIVTMA--KGIANGFPMGAVVTT-TEIAQVLTKAA--H-F-NTFGGNPV-GCVIASTVLDVIKDEELQ  178 (195)
Q Consensus       108 ~~~-~~~~~~~pdi~~~s--K~l~~G~~~g~v~~~-~~i~~~l~~~~--~-~-~t~~~~p~-~~~aa~aal~~~~~~~~~  178 (195)
                      ..- .....-..|+++||  |.++.+. .|+++++ +++.+.++...  + + .|+++-+- -+.|....|+...+.+..
T Consensus       240 i~ei~~e~~s~aD~~t~S~~K~~~~~~-GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~  318 (460)
T PRK13237        240 IKEIVHEMFSYADGCTMSGKKDCLVNI-GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYI  318 (460)
T ss_pred             HhHHhhhccCcCcEEEEeCCCCCCCCC-ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHH
Confidence            000 00011134777776  6665321 3666665 46888877652  1 2 25544222 333333345544444555


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++--++.++|.+.|++
T Consensus       319 ~~ri~~~~~l~~~L~~  334 (460)
T PRK13237        319 EHRVGQVRYLGEKLLA  334 (460)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555566777777653

>PRK02769 histidine decarboxylase; Provisional

Probab=98.45  E-value=7.6e-06  Score=71.04  Aligned_cols=147  Identities=14%  Similarity=0.232  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC---CEEEEeccccCcccc---CCCccccc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN---GLFISDEVQTGFGRT---GDNYWGFE  112 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~---~llI~DEv~~g~gr~---G~~~~~~~  112 (195)
                      ++++|++.|++.+  .++.+|++--...+.|.+-+    +++|.++|++||   +++.+|=+|+|+-..   ....+.+.
T Consensus       146 d~~~L~~~i~~~~--~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~  219 (380)
T PRK02769        146 DYDDLISKIKENK--NQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFA  219 (380)
T ss_pred             cHHHHHHHHHhCC--CCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCcc
Confidence            4788888888652  36778888888888999888    999999999998   699999999864211   00001111


Q ss_pred             ccCCCcchhhhc--cccCCCCceEEEEecHHHHHHhhccc-----cccCCCc--hHHHHHHHHHHHHhhcc---hhHHHH
Q psy13322        113 MHGVSPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAA-----HFNTFGG--NPVGCVIASTVLDVIKD---EELQYN  180 (195)
Q Consensus       113 ~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~-----~~~t~~~--~p~~~~aa~aal~~~~~---~~~~~~  180 (195)
                         ...|.+++|  |-+++-.+.|.++.+++..+.+....     ...|+.+  |..+.++..++|+.+..   ++..++
T Consensus       220 ---~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~  296 (380)
T PRK02769        220 ---DGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQH  296 (380)
T ss_pred             ---CCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHH
Confidence               146778886  86664467899999887665543211     1123333  33566777777877654   456778


Q ss_pred             HHHHHHHHHHHhhc
Q psy13322        181 CKQVSAQIIGYLRV  194 (195)
Q Consensus       181 l~~~~~~l~~~L~~  194 (195)
                      ..++.+++.++|++
T Consensus       297 ~~~la~~l~~~L~~  310 (380)
T PRK02769        297 CLDMAQYAVDRLQA  310 (380)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88889999998864

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.45  E-value=2.1e-06  Score=74.66  Aligned_cols=137  Identities=17%  Similarity=0.094  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC-CEEEEeccccCccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN-GLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~-~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++.|++.++     .++++|++|++.+....+..    |++|+++++++| +++|+|...+..    -   .+..+..-.
T Consensus       130 ~~~l~~~l~-----~~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~atp----~---~~~pL~~Ga  193 (386)
T PF01053_consen  130 LEALEAALR-----PNTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFATP----Y---NQNPLELGA  193 (386)
T ss_dssp             HHHHHHHHC-----TTEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTTHT----T---TC-GGGGT-
T ss_pred             HHHHHhhcc-----ccceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeeccccce----e---eeccCcCCc
Confidence            678888887     37889999999988766666    999999999998 999999886421    1   112122335


Q ss_pred             chhhh--ccccCC-C-CceEEEEec--HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322        119 DIVTM--AKGIAN-G-FPMGAVVTT--TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 di~~~--sK~l~~-G-~~~g~v~~~--~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L  192 (195)
                      ||++.  +|.++| | .-+|+++++  +++.+.+...........+|..+...+..|+.+  .-.+++..++...+.+.|
T Consensus       194 Divv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl--~~R~~~~~~nA~~lA~~L  271 (386)
T PF01053_consen  194 DIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTL--PLRMERQNENAEALAEFL  271 (386)
T ss_dssp             SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHH
T ss_pred             eEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHH
Confidence            76655  599984 2 456777765  367776654322222233566666555555544  234566666777777666


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       272 ~~  273 (386)
T PF01053_consen  272 EE  273 (386)
T ss_dssp             HT
T ss_pred             Hh
Confidence            53

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=98.43  E-value=3.5e-06  Score=74.70  Aligned_cols=97  Identities=20%  Similarity=0.231  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEccc--CCCCCc--ccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCC-cccc---
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESI--QGVSGV--KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDN-YWGF---  111 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv--~s~~G~--~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~-~~~~---  111 (195)
                      ++++++.+.     .++++|+++..  +++.|.  .++    +++|.++|++||+++|+|-.   .|..+.. .++.   
T Consensus       201 l~dle~aI~-----~~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~la~~~g~~vivD~~---sG~l~~~~~~gl~~~  268 (454)
T TIGR00474       201 LKDYEDAIT-----ENTALLLKVHTSNYRIVGFTEEVS----IAELVALGREHGLPVMEDLG---SGSLVDLSRYGLPDE  268 (454)
T ss_pred             HHHHHHhcC-----cCCEEEEEEccCcccccCCCCCCC----HHHHHHHHHHcCCeEEEECC---CcccccchhccCCCC
Confidence            567777664     24566666554  445563  555    99999999999999999953   3332210 0111   


Q ss_pred             ----cccCCCcchhhhc--cccCCCCceEEEEecHHHHHHhhcc
Q psy13322        112 ----EMHGVSPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKA  149 (195)
Q Consensus       112 ----~~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~  149 (195)
                          .......|++++|  |.++|. ..|++++++++++.+.+.
T Consensus       269 p~~~~~~~~GaDiv~fSg~K~LgGp-~~G~i~g~~~~i~~l~~~  311 (454)
T TIGR00474       269 PTVQEVIAAGVDLVTFSGDKLLGGP-QAGIIVGKKELIERLKKN  311 (454)
T ss_pred             cccccHhHcCCCEEEecCccccCCC-eEEEEEECHHHHHhhhhc
Confidence                1113456899998  999754 378888999887766543

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.42  E-value=2.1e-06  Score=75.65  Aligned_cols=137  Identities=14%  Similarity=0.095  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.++++|.     .++++|++|..-+..+.++.    +++|.++|++||+++|+|++++    +.   ..+..+..-.|
T Consensus       137 ~~~l~~~I~-----~~Tk~I~~e~pgnP~~~v~D----i~~I~~iA~~~gi~livD~T~~----tP---~~~~pl~~GAD  200 (432)
T PRK06702        137 ADEIVALAN-----DKTKLVYAESLGNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA----TP---YLCQAFEHGAN  200 (432)
T ss_pred             HHHHHHhCC-----cCCeEEEEEcCCCccccccC----HHHHHHHHHHcCCEEEEECCCC----ch---hhCChhhcCCC
Confidence            466777775     35678999997666676666    9999999999999999999964    11   11222233456


Q ss_pred             hh--hhccccCC-CCce-EEEEecH----------HHH---------------------HHhh-ccccccCCCchHHHHH
Q psy13322        120 IV--TMAKGIAN-GFPM-GAVVTTT----------EIA---------------------QVLT-KAAHFNTFGGNPVGCV  163 (195)
Q Consensus       120 i~--~~sK~l~~-G~~~-g~v~~~~----------~i~---------------------~~l~-~~~~~~t~~~~p~~~~  163 (195)
                      |+  .++|.++| +.-+ |.++...          ++.                     .... .....+....+|+.+.
T Consensus       201 Ivv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~  280 (432)
T PRK06702        201 IIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAY  280 (432)
T ss_pred             EEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHH
Confidence            55  55798874 2333 3333211          111                     0001 1112233467888888


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        164 IASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       164 aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .++..|+.+.  ..+++-.+|...+.+.|++
T Consensus       281 l~~rgL~Tl~--lR~~r~~~Na~~la~~L~~  309 (432)
T PRK06702        281 ISNIGLETLH--LRMERHSENALAVAKWLAD  309 (432)
T ss_pred             HHHhccCcHH--HHHHHHHHHHHHHHHHHHh
Confidence            8887777653  3445556777777777653

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=98.42  E-value=1.2e-05  Score=69.53  Aligned_cols=141  Identities=18%  Similarity=0.245  Sum_probs=94.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+++++.|++..+-+-++.+-.|+   ++|.+-+    +++|.++|++||+++|+|=|-+ +|  |. .+-...+|  .|
T Consensus       119 p~~v~~~L~~~~~~~~V~~vH~ET---STGvlnp----l~~I~~~~k~~g~l~iVDaVsS-~G--g~-~~~vd~wg--iD  185 (383)
T COG0075         119 PEEVEEALDKDPDIKAVAVVHNET---STGVLNP----LKEIAKAAKEHGALLIVDAVSS-LG--GE-PLKVDEWG--ID  185 (383)
T ss_pred             HHHHHHHHhcCCCccEEEEEeccC---cccccCc----HHHHHHHHHHcCCEEEEEeccc-CC--Cc-ccchhhcC--cc
Confidence            689999999653212344444454   3677776    9999999999999999998865 54  32 22234444  35


Q ss_pred             hhhhc--cccC--CCCceEEEEecHHHHHHhhccc------------------cccCCCchHHHHHHHHHHHHhhcc---
Q psy13322        120 IVTMA--KGIA--NGFPMGAVVTTTEIAQVLTKAA------------------HFNTFGGNPVGCVIASTVLDVIKD---  174 (195)
Q Consensus       120 i~~~s--K~l~--~G~~~g~v~~~~~i~~~l~~~~------------------~~~t~~~~p~~~~aa~aal~~~~~---  174 (195)
                      +++.|  |+++  .|  +|.+..+++..+.+....                  ..+-+..+.....+..++|+.+.+   
T Consensus       186 v~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGl  263 (383)
T COG0075         186 VAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGL  263 (383)
T ss_pred             EEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence            55554  9998  46  688888887766665321                  112233444566677789998855   


Q ss_pred             hhHHHHHHHHHHHHHHHhhcC
Q psy13322        175 EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       175 ~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      ++..++-+++++.+++.++++
T Consensus       264 e~r~~RH~~~~~a~r~~~~al  284 (383)
T COG0075         264 EARIARHRRLAEALRAGLEAL  284 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            466677888888888888753

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=98.41  E-value=4.1e-06  Score=74.77  Aligned_cols=141  Identities=21%  Similarity=0.173  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     +++++|++.. ++..|.+   ...+++|.++|+++|+++++|.++. ++..|. . ....+  -.|
T Consensus       198 ~e~L~~~i~-----~~t~~V~v~~-Pn~tG~~---~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~-~-~~~~~--GaD  263 (481)
T PRK04366        198 LEALKAAVG-----EDTAALMLTN-PNTLGLF---ERNILEIAEIVHEAGGLLYYDGANL-NAILGK-A-RPGDM--GFD  263 (481)
T ss_pred             HHHHHhhcc-----cCCeEEEEeC-CCCcccc---chHHHHHHHHHHHcCCEEEEEecCh-hhhccc-C-Ccccc--CCC
Confidence            567777664     2566676654 3456753   2349999999999999999999986 333332 1 11222  348


Q ss_pred             hhhhc--cccC----CCCc-eEEEEecHHHHHHhhcc-------ccc------------cCCCchHHHHHHHHHHHHhhc
Q psy13322        120 IVTMA--KGIA----NGFP-MGAVVTTTEIAQVLTKA-------AHF------------NTFGGNPVGCVIASTVLDVIK  173 (195)
Q Consensus       120 i~~~s--K~l~----~G~~-~g~v~~~~~i~~~l~~~-------~~~------------~t~~~~p~~~~aa~aal~~~~  173 (195)
                      +++++  |.|+    .|-| +|++.+++++.+.+...       .+.            -.++++.+.+.++...+..+.
T Consensus       264 ~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G  343 (481)
T PRK04366        264 VVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLG  343 (481)
T ss_pred             EEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHH
Confidence            77663  8886    2323 66777888777766311       000            011223344455555555554


Q ss_pred             chhH---HHHHHHHHHHHHHHhhc
Q psy13322        174 DEEL---QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       174 ~~~~---~~~l~~~~~~l~~~L~~  194 (195)
                      .+++   .++..++.++|.++|++
T Consensus       344 ~~Gl~~~a~~~~~~a~~l~~~L~~  367 (481)
T PRK04366        344 AEGLREVSEDAVLNANYLKARLKD  367 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHh
Confidence            4433   45567778899988875

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=98.41  E-value=6.9e-06  Score=72.57  Aligned_cols=133  Identities=19%  Similarity=0.173  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc--cCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR--TGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr--~G~~~~~~~~~~~~  117 (195)
                      ++.+++.+.     .++++|++.++.|.   .    ..+++|+++|++||++||.|++|+ +|-  .|+.      .|-.
T Consensus       149 ~~~le~~i~-----~~tkaVi~~~~~G~---p----~dl~~I~~la~~~gi~vIeDaa~a-~G~~~~g~~------~G~~  209 (438)
T PRK15407        149 ASLLEAAVS-----PKTKAIMIAHTLGN---P----FDLAAVKAFCDKHNLWLIEDNCDA-LGSTYDGRM------TGTF  209 (438)
T ss_pred             HHHHHHHcC-----cCCeEEEEeCCCCC---h----hhHHHHHHHHHHCCCEEEEECccc-hhhhcCCee------eecc
Confidence            567777664     36778888876552   2    348999999999999999999998 542  2321      1222


Q ss_pred             cchhhhc----cccCCCCceEEEEecH-HHHHHhhcc---c------------------------------------ccc
Q psy13322        118 PDIVTMA----KGIANGFPMGAVVTTT-EIAQVLTKA---A------------------------------------HFN  153 (195)
Q Consensus       118 pdi~~~s----K~l~~G~~~g~v~~~~-~i~~~l~~~---~------------------------------------~~~  153 (195)
                      -|+.+||    |.+++| ..|++++++ ++.+.+...   .                                    .++
T Consensus       210 gd~~~fSf~~~k~~~~g-eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  288 (438)
T PRK15407        210 GDIATLSFYPAHHITMG-EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGY  288 (438)
T ss_pred             CceEEEeCCCCCCcccc-CceEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccccccccccccc
Confidence            3677665    777744 257888765 454433211   1                                    112


Q ss_pred             CCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       154 t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .+..+.+.++.++.-|+.++  +..++-+++.+++.+.|..
T Consensus       289 n~rmsel~AAig~~qL~~l~--~~~~~R~~~a~~y~~~L~~  327 (438)
T PRK15407        289 NLKITDMQAAIGLAQLEKLP--GFIEARKANFAYLKEGLAS  327 (438)
T ss_pred             ccCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcc
Confidence            22345677777777777663  3555566666666666643

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.40  E-value=3.9e-06  Score=74.04  Aligned_cols=81  Identities=14%  Similarity=0.071  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.|.     +++++|++|.+.+..|.+.+    +++|.++|++||+++|+|.+|+ .+..-.   .   ..+-.|
T Consensus       139 ~~~l~~~i~-----~~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a-~~~~~~---p---l~~GaD  202 (433)
T PRK08134        139 IDGWRAAIR-----PNTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT-TPYLLR---P---FEHGAD  202 (433)
T ss_pred             HHHHHHhcC-----CCCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCc-ccccCC---c---hhcCCC
Confidence            577777776     36778999998888888887    9999999999999999999986 222111   1   134467


Q ss_pred             hhhhc--cccCC-CCceEEE
Q psy13322        120 IVTMA--KGIAN-GFPMGAV  136 (195)
Q Consensus       120 i~~~s--K~l~~-G~~~g~v  136 (195)
                      ++++|  |.+++ |-.+|.+
T Consensus       203 ~vv~S~tK~l~g~g~~~gG~  222 (433)
T PRK08134        203 LVYHSATKFLGGHGTAIGGV  222 (433)
T ss_pred             EEEeccccccCCCCCceEEE
Confidence            77775  98873 4334443

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=98.33  E-value=1e-05  Score=71.29  Aligned_cols=153  Identities=12%  Similarity=0.047  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc--cc-CCCcccccccC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG--RT-GDNYWGFEMHG  115 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g--r~-G~~~~~~~~~~  115 (195)
                      +++.|++.|..... .+++.|.++-.....|-.+.+.+.+++++++|++||+.||.|=++. +|  .. -.+--++....
T Consensus       155 D~~~Le~aI~~~~~-~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gNA~~I~~re~g~~~~~  232 (450)
T TIGR02618       155 DLKKLQKLIDEVGA-DKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC-VENAYFIKEREQGYEDKS  232 (450)
T ss_pred             CHHHHHHHhccccC-cccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch-hhChhhhhcccccccCCC
Confidence            37889998875432 2556666666655554467788899999999999999999999886 32  10 00000011001


Q ss_pred             C---------CcchhhhccccC-CCCceEEEEe--cHHHHHHhhccc--c-c-cCCCc-hHHHHHHHHHHHHhhcchhHH
Q psy13322        116 V---------SPDIVTMAKGIA-NGFPMGAVVT--TTEIAQVLTKAA--H-F-NTFGG-NPVGCVIASTVLDVIKDEELQ  178 (195)
Q Consensus       116 ~---------~pdi~~~sK~l~-~G~~~g~v~~--~~~i~~~l~~~~--~-~-~t~~~-~p~~~~aa~aal~~~~~~~~~  178 (195)
                      +         ..|. +++|+.- ++.|+|.+++  .+++++..+...  + + .|+++ .--.+.|...+|+..-+....
T Consensus       233 i~ei~~e~~~~aD~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~  311 (450)
T TIGR02618       233 IAEILKEMMSYADG-CTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYI  311 (450)
T ss_pred             HHHHHHHHhccCcE-EEEeeccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHH
Confidence            1         2244 3444443 2345444444  567888776552  1 2 24443 223444444556554344445


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++-..+.++|.+.|++
T Consensus       312 ~~r~~~a~~La~~L~~  327 (450)
T TIGR02618       312 EHRVKQVRYLGDKLKA  327 (450)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555566777777764

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.31  E-value=6.8e-06  Score=72.58  Aligned_cols=83  Identities=18%  Similarity=0.135  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.|.     .++++|++|...+..|.+.+    +++|.++|+++|+++|+|.+++ .|..   .... .+|  .|
T Consensus       145 ~e~l~~~l~-----~~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a-~g~~---~~p~-~~G--aD  208 (437)
T PRK05613        145 PESWQAAVQ-----PNTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA-TAAL---VRPL-ELG--AD  208 (437)
T ss_pred             HHHHHHhCC-----ccCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCc-cccc---cChH-HhC--CC
Confidence            566777665     25668899998877787676    9999999999999999999986 3221   1111 223  48


Q ss_pred             hhhhc--cccCC-CCc-eEEEEe
Q psy13322        120 IVTMA--KGIAN-GFP-MGAVVT  138 (195)
Q Consensus       120 i~~~s--K~l~~-G~~-~g~v~~  138 (195)
                      ++++|  |.++| |-- .|+++.
T Consensus       209 ivv~S~~K~l~G~gd~~gG~vv~  231 (437)
T PRK05613        209 VVVASLTKFYTGNGSGLGGVLID  231 (437)
T ss_pred             EEEeeccceecCCCcceeEEEEe
Confidence            88776  98884 433 344543

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=98.26  E-value=6.6e-06  Score=71.97  Aligned_cols=142  Identities=12%  Similarity=0.087  Sum_probs=84.0

Q ss_pred             HHHHHHHHhcCCCCCeE---EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc-cccCCCcccccccCC
Q psy13322         41 EQLVNAFQYNVPITGAA---ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF-GRTGDNYWGFEMHGV  116 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~a---avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~-gr~G~~~~~~~~~~~  116 (195)
                      +.+++.|+++..  .-+   +||+-|-+  .|....    +++|.++|+++++.|++||+|.+. ++. . + .......
T Consensus       154 ~~i~~~l~~~p~--~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~-~-l-p~~a~~~  222 (417)
T PF01276_consen  154 EDIEEALKEHPD--AKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVDEAHGAHFGFH-P-L-PRSALAL  222 (417)
T ss_dssp             HHHHHHHHHCTT--CHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCS-G-G-GTTCSST
T ss_pred             HHHHHHHHhCcc--ccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEEccccccccCC-C-C-ccchhhc
Confidence            788999998742  223   57777755  687776    999999999999999999999863 332 2 1 1122334


Q ss_pred             Ccc-------hhhhc--cccCCCCceEEEEecHHH---HHHhhccc-cccCCCchHHHHHHHHHHHHhh-cc--hhHHHH
Q psy13322        117 SPD-------IVTMA--KGIANGFPMGAVVTTTEI---AQVLTKAA-HFNTFGGNPVGCVIASTVLDVI-KD--EELQYN  180 (195)
Q Consensus       117 ~pd-------i~~~s--K~l~~G~~~g~v~~~~~i---~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~  180 (195)
                      -.|       ++|-|  |.+++=-..|++-.+.+.   .+.+.... ...|++.+-+-+++.-.+.+.+ ..  ..+.++
T Consensus       223 gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~  302 (417)
T PF01276_consen  223 GADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEE  302 (417)
T ss_dssp             TSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             cCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            445       77777  888731235666655432   23333322 2334555545555555565655 22  457777


Q ss_pred             HHHHHHHHHHHhh
Q psy13322        181 CKQVSAQIIGYLR  193 (195)
Q Consensus       181 l~~~~~~l~~~L~  193 (195)
                      ..++.+.+++.|+
T Consensus       303 ~i~~a~~~R~~i~  315 (417)
T PF01276_consen  303 AIELAEEFRKKIN  315 (417)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7888888888873

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>KOG0053|consensus

Probab=98.26  E-value=1.1e-05  Score=69.97  Aligned_cols=107  Identities=19%  Similarity=0.088  Sum_probs=76.5

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccCCC--
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIANG--  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~~G--  130 (195)
                      ++.+|++|++-+....++.    +++|+++|+++|+++|+|+...+.-       -...+.+-.||++-|  |-|+|.  
T Consensus       162 ~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p~-------~~~pL~lGADIV~hSaTKyi~Ghsd  230 (409)
T KOG0053|consen  162 NTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSPY-------NQDPLPLGADIVVHSATKYIGGHSD  230 (409)
T ss_pred             CceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcCccc-------ccChhhcCCCEEEEeeeeeecCCcc
Confidence            6889999999888877666    9999999999999999999865331       122233447888665  999964  


Q ss_pred             CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhh
Q psy13322        131 FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI  172 (195)
Q Consensus       131 ~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~  172 (195)
                      .-+|.++.+ +++...+.......-+..+|+.+.-....++.+
T Consensus       231 vi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl  273 (409)
T KOG0053|consen  231 VIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKTL  273 (409)
T ss_pred             eeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcchh
Confidence            456667775 677766655544444566788777666555543

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.20  E-value=3.3e-05  Score=67.26  Aligned_cols=142  Identities=18%  Similarity=0.185  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCC
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~  116 (195)
                      -+.+.+++++++++|+    .||+....     .+.+ --+++++++|++.|++|++|=.|. |+.-.|.  +. .-+..
T Consensus       156 ID~d~l~~~a~~~kPk----lIi~G~S~-----y~~~-~d~~~~reIad~vga~l~~D~sH~~GLIa~g~--~~-~P~~~  222 (399)
T PF00464_consen  156 IDYDELEKLAKEHKPK----LIICGASS-----YPRP-IDFKRFREIADEVGAYLMADISHIAGLIAGGL--FP-NPFPY  222 (399)
T ss_dssp             B-HHHHHHHHHHH--S----EEEEE-SS-----TSS----HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS--S---GCCT
T ss_pred             ECHHHHHHHHhhcCCC----EEEECchh-----ccCc-cCHHHHHHHHHhcCcEEEecccccccceehhe--ec-Ccccc
Confidence            3478999999988654    67776532     1222 227999999999999999999996 4533332  22 12233


Q ss_pred             Ccchhhhc--cccCCCCceEEEEec--------------HHHHHHhhccccccCCCchHHHHHHH-HHHHHhhcc---hh
Q psy13322        117 SPDIVTMA--KGIANGFPMGAVVTT--------------TEIAQVLTKAAHFNTFGGNPVGCVIA-STVLDVIKD---EE  176 (195)
Q Consensus       117 ~pdi~~~s--K~l~~G~~~g~v~~~--------------~~i~~~l~~~~~~~t~~~~p~~~~aa-~aal~~~~~---~~  176 (195)
                       .|++|.|  |+|.| =+.|.++++              +++.+.+.+..+....+++-....|+ ..+|.....   .+
T Consensus       223 -ADvvt~sThKtl~G-PrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~  300 (399)
T PF00464_consen  223 -ADVVTGSTHKTLRG-PRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKE  300 (399)
T ss_dssp             -SSEEEEESSGGG-S-SS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHH
T ss_pred             -ceEEEeeccccccc-cCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHH
Confidence             6888887  99973 345788888              78888888776666665544433333 345554432   35


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy13322        177 LQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       177 ~~~~l~~~~~~l~~~L~~  194 (195)
                      ..+++-+|.+.|.+.|.+
T Consensus       301 Ya~qVv~NAk~La~~L~~  318 (399)
T PF00464_consen  301 YAKQVVKNAKALAEALQE  318 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            667777888888887764

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.15  E-value=3.7e-05  Score=73.78  Aligned_cols=145  Identities=19%  Similarity=0.182  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|+++++.+.  +++++|++--....+|...+    +++|.++|+++|+++++|=++. .+..|.    ..-..+-.
T Consensus       652 Dle~L~~~i~~~~--~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~-~a~~~l----~~p~~~Ga  720 (993)
T PLN02414        652 NIEELRKAAEAHK--DNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANM-NAQVGL----TSPGFIGA  720 (993)
T ss_pred             CHHHHHHHHhccC--CCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCH-HhccCc----CCccccCC
Confidence            4789999998653  37888888887777777766    9999999999999999999986 222221    01112446


Q ss_pred             chhhhc--cccC----CCCc-eEEEEecHHHHHHhhccc-----------c---ccCCC----chHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMA--KGIA----NGFP-MGAVVTTTEIAQVLTKAA-----------H---FNTFG----GNPVGCVIASTVLDVIK  173 (195)
Q Consensus       119 di~~~s--K~l~----~G~~-~g~v~~~~~i~~~l~~~~-----------~---~~t~~----~~p~~~~aa~aal~~~~  173 (195)
                      |++++|  |+|+    +|=| +|.+.+++.+...+....           .   ..|..    ++.+.+.++..-++.+-
T Consensus       721 D~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG  800 (993)
T PLN02414        721 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMG  800 (993)
T ss_pred             CEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHC
Confidence            888774  8776    2323 788888888776654211           0   11222    23344444555555554


Q ss_pred             chhH---HHHHHHHHHHHHHHhhc
Q psy13322        174 DEEL---QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       174 ~~~~---~~~l~~~~~~l~~~L~~  194 (195)
                      .+++   .++...+..|+.++|++
T Consensus       801 ~~Gl~~~a~~a~~nAnYl~~rL~~  824 (993)
T PLN02414        801 SEGLTDASKIAILNANYMAKRLEG  824 (993)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555   67788889999988853

>KOG1368|consensus

Probab=98.14  E-value=2.4e-05  Score=65.05  Aligned_cols=149  Identities=16%  Similarity=0.113  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhcCCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc-cCCCccccccc
Q psy13322         39 FYEQLVNAFQYNVPI---TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR-TGDNYWGFEMH  114 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~---~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr-~G~~~~~~~~~  114 (195)
                      .++++|..+......   .....|.+|--....|-.+.|-+|+.++.+||++||+-|=+|-+.- |-- ... .-+...+
T Consensus       135 ~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-~NAavas-gV~vk~i  212 (384)
T KOG1368|consen  135 DLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-FNAAVAS-GVPVKKI  212 (384)
T ss_pred             eHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-hhHHHHc-CCCHHHH
Confidence            378999988743311   2578899999888777788899999999999999999888885432 100 000 0011111


Q ss_pred             CCCcc--hhhhccccCCCCce-EEEEecHHHHHHhhcc--ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322        115 GVSPD--IVTMAKGIANGFPM-GAVVTTTEIAQVLTKA--AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII  189 (195)
Q Consensus       115 ~~~pd--i~~~sK~l~~G~~~-g~v~~~~~i~~~l~~~--~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~  189 (195)
                      .-..|  -+++||++|.  |+ +.+++++++++....+  ..+..+-.+-+-++|++.+|+.-  -.+..+-.++...|.
T Consensus       213 ~~~fDSVsiCLSKglgA--PVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~--~~~L~~dHk~A~~lA  288 (384)
T KOG1368|consen  213 CSAFDSVSICLSKGLGA--PVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDEN--VPLLRADHKRAKELA  288 (384)
T ss_pred             HHhhhhhhhhhhccCCC--CcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHH
Confidence            11234  3588999983  33 5788899887654322  23444433456677777777642  123444445555555


Q ss_pred             HHhh
Q psy13322        190 GYLR  193 (195)
Q Consensus       190 ~~L~  193 (195)
                      +.++
T Consensus       289 e~~~  292 (384)
T KOG1368|consen  289 EYIN  292 (384)
T ss_pred             HHhc
Confidence            5443

>PLN02271 serine hydroxymethyltransferase

Probab=98.14  E-value=7.1e-05  Score=67.58  Aligned_cols=143  Identities=14%  Similarity=0.082  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      -+.++|++...+.    +.+.||+......   +..+   +++++++|+++|++|++|-+|. .|....+.+... .. .
T Consensus       285 IDyd~lek~a~~~----rPKLII~g~Sayp---r~~D---~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~sP-~~-~  351 (586)
T PLN02271        285 IDYDKLEEKALDF----RPKILICGGSSYP---REWD---YARFRQIADKCGAVLMCDMAHI-SGLVAAKECVNP-FD-Y  351 (586)
T ss_pred             cCHHHHHHHhhhc----CCeEEEECchhcc---CcCC---HHHHHHHHHHcCCEEEEECccc-ccccccCcCCCC-Cc-C
Confidence            3468888865543    5667888653221   2333   8899999999999999999997 444432111111 11 3


Q ss_pred             cchhhhc--cccCCCCceEEEEecHH--------------------HHHHhhccccccCCCchHH-HHHHHHHHHHhhcc
Q psy13322        118 PDIVTMA--KGIANGFPMGAVVTTTE--------------------IAQVLTKAAHFNTFGGNPV-GCVIASTVLDVIKD  174 (195)
Q Consensus       118 pdi~~~s--K~l~~G~~~g~v~~~~~--------------------i~~~l~~~~~~~t~~~~p~-~~~aa~aal~~~~~  174 (195)
                      .|+++.+  |+|.| =+.|.++++++                    +.+.+....+....+++.. .+++-..+++....
T Consensus       352 aDvvt~TTHKtLrG-PrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~  430 (586)
T PLN02271        352 CDIVTSTTHKSLRG-PRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVAT  430 (586)
T ss_pred             CcEEEeCCcccCCC-CCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhC
Confidence            6887665  99963 12256666543                    4444544444444444332 34444456665543


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 ---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ---~~~~~~l~~~~~~l~~~L~~  194 (195)
                         .+..+++-+|.+.|.+.|.+
T Consensus       431 ~efk~Ya~QVv~NAkaLA~~L~~  453 (586)
T PLN02271        431 PEYKAYMQQVKKNAQALASALLR  453 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence               34556677788888777753

>KOG2862|consensus

Probab=98.10  E-value=9.2e-05  Score=61.95  Aligned_cols=140  Identities=17%  Similarity=0.233  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +|.+++.|.+|.+    .+|.+-=.-+.+|..-+   .++...++|++|++++++|-|-+ +|  |. -|.+..+|+  |
T Consensus       131 le~i~~~lsqh~p----~~vfv~hgdsSTgV~q~---~~~~~g~lc~k~~~lllVD~VaS-lg--gt-~F~mDewgV--D  197 (385)
T KOG2862|consen  131 LEEITEKLSQHKP----KAVFVTHGDSSTGVLQD---LLAISGELCHKHEALLLVDTVAS-LG--GT-EFEMDEWGV--D  197 (385)
T ss_pred             HHHHHHHHHhcCC----ceEEEEecCccccccch---HHHHHHHHhhcCCeEEEEechhh-cC--Cc-cceehhhcc--c
Confidence            8999999998754    35555555566776544   36677799999999999999977 54  33 344555554  4


Q ss_pred             hh-hhc-cccC--CCCceEEEEecHHHHHHhhccc-----------------------cccCCCchHHHHHHHHHHHHhh
Q psy13322        120 IV-TMA-KGIA--NGFPMGAVVTTTEIAQVLTKAA-----------------------HFNTFGGNPVGCVIASTVLDVI  172 (195)
Q Consensus       120 i~-~~s-K~l~--~G~~~g~v~~~~~i~~~l~~~~-----------------------~~~t~~~~p~~~~aa~aal~~~  172 (195)
                      +. |-| |+++  .|+  +-+..++...+.++...                       ..+.+..+.-..-+..+||..+
T Consensus       198 vaytgSQKaL~aP~GL--siisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I  275 (385)
T KOG2862|consen  198 VAYTGSQKALGAPAGL--SIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALI  275 (385)
T ss_pred             EEEecchhhcCCCCCc--ceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHH
Confidence            44 334 9998  574  44777777777775421                       0011122333445566777766


Q ss_pred             cc---hhHHHHHHHHHHHHHHHhhc
Q psy13322        173 KD---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       173 ~~---~~~~~~l~~~~~~l~~~L~~  194 (195)
                      -+   ++..++-++++++++..|++
T Consensus       276 ~eeGL~~~~~rH~e~s~~l~~~l~~  300 (385)
T KOG2862|consen  276 AEEGLENSWRRHREMSKWLKLSLEA  300 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44   45667778888899888865

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=98.08  E-value=7e-05  Score=62.50  Aligned_cols=114  Identities=15%  Similarity=0.147  Sum_probs=76.8

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch-hhh--ccccCCC
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI-VTM--AKGIANG  130 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi-~~~--sK~l~~G  130 (195)
                      +.+.+|++.-..+.+|. +.+.+++.+|.+++++||+.||+|-+|. .=+.|- -|+-...-.-+.| .++  ||.==.|
T Consensus       178 e~~g~ic~SRPtNPTGN-VlTdeE~~kldalA~~~giPliIDnAYg-~PFP~i-ifsd~~~~w~~NiilC~SLSK~GLPG  254 (417)
T COG3977         178 ESTGAICVSRPTNPTGN-VLTDEELAKLDALARQHGIPLIIDNAYG-VPFPGI-IFSDATPLWNENIILCMSLSKLGLPG  254 (417)
T ss_pred             cccceEEecCCCCCCCC-cccHHHHHHHHHHhhhcCCcEEEecccC-CCCCce-ecccccccCCCCEEEEeehhhcCCCC
Confidence            47889999888888885 5678899999999999999999999976 323332 1110011123343 344  5632278


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHH
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLD  170 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~  170 (195)
                      .++|-++++++++..+.+.....+.+..-++.|.+..+++
T Consensus       255 ~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie  294 (417)
T COG3977         255 SRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIE  294 (417)
T ss_pred             cceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhh
Confidence            8999999999999998876544444444455555555554

>PLN03032 serine decarboxylase; Provisional

Probab=98.07  E-value=0.00015  Score=62.91  Aligned_cols=147  Identities=17%  Similarity=0.089  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC-----CEEEEeccccCccc-c-CC-Cccc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN-----GLFISDEVQTGFGR-T-GD-NYWG  110 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~-----~llI~DEv~~g~gr-~-G~-~~~~  110 (195)
                      ++++|++.|++..  .++.+|++--..++.|.+-+    +++|.++|++||     +++-+|=++.|+-. . .. ..+.
T Consensus       147 d~~~L~~~i~~~~--~~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~  220 (374)
T PLN03032        147 DYDDLERALAKNR--DKPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVT  220 (374)
T ss_pred             cHHHHHHHHHHcC--CCCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccC
Confidence            4788999888542  25667777667778898877    999999999997     58999999875311 0 00 0011


Q ss_pred             ccccCCCcchhhhc--cccCCCCceEEEEecHHHHHHhhccc-----cccCCCc--hHHHHHHHHHHHHhhcc---hhHH
Q psy13322        111 FEMHGVSPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAA-----HFNTFGG--NPVGCVIASTVLDVIKD---EELQ  178 (195)
Q Consensus       111 ~~~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~-----~~~t~~~--~p~~~~aa~aal~~~~~---~~~~  178 (195)
                         +....|.++++  |-++.-.++|+++.++...+.+....     ...|..+  +....++..++|+.+-.   .++.
T Consensus       221 ---~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~  297 (374)
T PLN03032        221 ---FRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDV  297 (374)
T ss_pred             ---CCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHH
Confidence               11245777776  76654566899999887666553321     1123333  23556666677776644   4566


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++.-++.++|.+.|++
T Consensus       298 ~~~~~~a~~l~~~l~~  313 (374)
T PLN03032        298 QHCMRNAHYLKDRLTE  313 (374)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7778888888888865

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=98.05  E-value=7.2e-05  Score=67.50  Aligned_cols=151  Identities=15%  Similarity=0.140  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-
Q psy13322         39 FYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-  116 (195)
                      +++.|++.|++.... .++.+|+.-....+.|.+-+    +++|.++|++||+++.+|=+|+|....-..+ -....++ 
T Consensus       248 d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~-r~~l~gle  322 (522)
T TIGR03799       248 DVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTY-RHLLKGIE  322 (522)
T ss_pred             CHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHH-HHHhcCch
Confidence            367888877642211 24545555444446788888    9999999999999999999987542211100 0011254 


Q ss_pred             Ccchhhhc--cccCCCCceEEEEecH-HHHHHhhccc-c----------ccCCCc-hHHHHHHHHHHHHhhcc---hhHH
Q psy13322        117 SPDIVTMA--KGIANGFPMGAVVTTT-EIAQVLTKAA-H----------FNTFGG-NPVGCVIASTVLDVIKD---EELQ  178 (195)
Q Consensus       117 ~pdi~~~s--K~l~~G~~~g~v~~~~-~i~~~l~~~~-~----------~~t~~~-~p~~~~aa~aal~~~~~---~~~~  178 (195)
                      ..|.++++  |.+.+-+.+|+++.++ ...+.+.... +          ..++.+ -+.......++|+.+..   +.+.
T Consensus       323 ~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii  402 (522)
T TIGR03799       323 RADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLI  402 (522)
T ss_pred             hCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHH
Confidence            67888887  9776555678888764 4545443311 0          012222 22222345677776643   5677


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++..++.++|.+.|++
T Consensus       403 ~~~~~la~~l~~~L~~  418 (522)
T TIGR03799       403 DQSIEKAKYFADLIQQ  418 (522)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8888888899888864

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=98.02  E-value=5.2e-06  Score=69.55  Aligned_cols=150  Identities=14%  Similarity=0.083  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--ccccCCCcccccccCC
Q psy13322         40 YEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG--FGRTGDNYWGFEMHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g--~gr~G~~~~~~~~~~~  116 (195)
                      +++|++.+..... ..++++|.+|-.....|-.+++.++|++|.++|++||+.|.+|=+.-.  ....|.   ....+--
T Consensus       108 ~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~---~~~e~~~  184 (290)
T PF01212_consen  108 PEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGV---SLAEIAA  184 (290)
T ss_dssp             HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHH---HHHHHHT
T ss_pred             HHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccc---cHHHHhh
Confidence            6888888877432 137899999998777666788999999999999999999999955310  000110   1111112


Q ss_pred             Ccchhhhc--cccCCCCc-eEEEEecHHHHHHhhccc--cccC--CCchHHHHHH-HHHHHHhhcc-hhHHHHHHHHHHH
Q psy13322        117 SPDIVTMA--KGIANGFP-MGAVVTTTEIAQVLTKAA--HFNT--FGGNPVGCVI-ASTVLDVIKD-EELQYNCKQVSAQ  187 (195)
Q Consensus       117 ~pdi~~~s--K~l~~G~~-~g~v~~~~~i~~~l~~~~--~~~t--~~~~p~~~~a-a~aal~~~~~-~~~~~~l~~~~~~  187 (195)
                      --|++++|  |.++  .+ .+.+++++++++......  .+..  ..+-+.++.. -.+++..++. .....+..++.++
T Consensus       185 ~~D~v~~~~tK~~g--~~~Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~  262 (290)
T PF01212_consen  185 GADSVSFGGTKNGG--APGGAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQFAALRALELWLERARHANAMAKR  262 (290)
T ss_dssp             TSSEEEEETTSTT---SSSEEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHHC
T ss_pred             hCCEEEEEEEcccc--cccceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34777665  7665  33 466778888554332211  1111  1111111000 0122222222 3456667777888


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      |.+.|+.
T Consensus       263 La~~l~~  269 (290)
T PF01212_consen  263 LAAGLEA  269 (290)
T ss_dssp             HHHCHHE
T ss_pred             HHHHHHH
Confidence            8877764

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=98.02  E-value=0.00019  Score=61.73  Aligned_cols=133  Identities=21%  Similarity=0.207  Sum_probs=80.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc--cCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR--TGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr--~G~~~~~~~~~~~~  117 (195)
                      .+.+++++.     .++++||+--++|   ....    +++|.++|++||+.||-|=+|+ +|-  .|+      ..|-.
T Consensus       103 ~~~~~~~i~-----~~t~ai~~~h~~G---~~~d----~~~i~~~~~~~~i~lIeD~a~a-~g~~~~g~------~~G~~  163 (363)
T PF01041_consen  103 PEALEKAIT-----PKTKAILVVHLFG---NPAD----MDAIRAIARKHGIPLIEDAAQA-FGARYKGR------PVGSF  163 (363)
T ss_dssp             HHHHHHHHH-----TTEEEEEEE-GGG---B-------HHHHHHHHHHTT-EEEEE-TTT-TT-EETTE------ETTSS
T ss_pred             HHHHHHHhc-----cCccEEEEecCCC---Cccc----HHHHHHHHHHcCCcEEEccccc-cCceeCCE------eccCC
Confidence            688888888     3567888777766   2232    9999999999999999999998 542  222      12334


Q ss_pred             cchhhhc----cccCCCCceEEEEecH-HHHHHhhcc---c--------------cccCCCchHHHHHHHHHHHHhhcch
Q psy13322        118 PDIVTMA----KGIANGFPMGAVVTTT-EIAQVLTKA---A--------------HFNTFGGNPVGCVIASTVLDVIKDE  175 (195)
Q Consensus       118 pdi~~~s----K~l~~G~~~g~v~~~~-~i~~~l~~~---~--------------~~~t~~~~p~~~~aa~aal~~~~~~  175 (195)
                      -|+.+||    |.+++|- .|++++++ ++.+.++..   .              .++.+-.+.+..+.+++-|+.+++ 
T Consensus       164 gd~~~fSf~~~K~i~~ge-GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~-  241 (363)
T PF01041_consen  164 GDIAIFSFHPTKIITTGE-GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDE-  241 (363)
T ss_dssp             SSEEEEESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHH-
T ss_pred             CCceEecCCCCCCCcCCC-CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhh-
Confidence            4777775    9997431 47777764 555555432   1              122344577888878888877643 


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                       ..++-+++.+++.+.|..
T Consensus       242 -~~~~R~~~a~~y~~~L~~  259 (363)
T PF01041_consen  242 -IIARRRENAQRYREALAG  259 (363)
T ss_dssp             -HHHHHHHHHHHHHHHHTT
T ss_pred             -hHHHHHHHHHHHHHHHhc
Confidence             445555666666666654

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK06434 cystathionine gamma-lyase; Validated

Probab=98.02  E-value=6.4e-05  Score=65.37  Aligned_cols=124  Identities=17%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccCC-C-
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIAN-G-  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~~-G-  130 (195)
                      ++.+|++|.+-+..+....    +++|.++|++++  +++|-+++ -...++      ..+.-.|++++|  |.++| | 
T Consensus       148 ~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~-s~~~~~------pl~~gaDivv~S~tK~i~G~~d  214 (384)
T PRK06434        148 NYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFA-SPYNQN------PLDLGADVVIHSATKYISGHSD  214 (384)
T ss_pred             CeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCC-CcccCC------chhcCCCEEEeecccccCCCCC
Confidence            6789999999877776655    999999999998  46699864 222222      224457888886  99975 3 


Q ss_pred             CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        131 FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       131 ~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      .-.|+++++ +++.+.+...........+|+.++.++..|+.+  +..+++-.++...+.+.|+
T Consensus       215 ~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL--~~R~~r~~~~a~~~a~~L~  276 (384)
T PRK06434        215 VVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTL--GLRMEKHNKNGMELARFLR  276 (384)
T ss_pred             ceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHH
Confidence            445666664 456565543221222334677666666666555  3455666666666666665

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.02  E-value=9.5e-05  Score=65.07  Aligned_cols=150  Identities=15%  Similarity=0.093  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc----Cc------cccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT----GF------GRTGDNY  108 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~----g~------gr~G~~~  108 (195)
                      ++++|++.|+.+++ +++..+.+.-..+..|-.++|.+.+++++++|++||+.+.+|=+.-    -|      +..|.  
T Consensus       168 dl~~le~~I~~~g~-~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~--  244 (467)
T TIGR02617       168 DLEGLERGIEEVGP-NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNW--  244 (467)
T ss_pred             CHHHHHHHHhhcCC-CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCC--
Confidence            47899999987654 4788888887777667788899999999999999999999996531    01      12221  


Q ss_pred             cccccc----CCCcchh--hhccccCCCCce-EEEEecHH-HH---HHhhccc----cccCCCc-hHHHHHHHHHHHHhh
Q psy13322        109 WGFEMH----GVSPDIV--TMAKGIANGFPM-GAVVTTTE-IA---QVLTKAA----HFNTFGG-NPVGCVIASTVLDVI  172 (195)
Q Consensus       109 ~~~~~~----~~~pdi~--~~sK~l~~G~~~-g~v~~~~~-i~---~~l~~~~----~~~t~~~-~p~~~~aa~aal~~~  172 (195)
                       +....    --..|.+  ++||.++  -|+ |.++++++ +.   +..+...    ..-|+++ +--.+.|....|+..
T Consensus       245 -si~eI~rE~~~~aDsvt~slsKglg--ApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~  321 (467)
T TIGR02617       245 -SIEQITRETYKYADMLAMSAKKDAM--VPMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG  321 (467)
T ss_pred             -CHHHHHHHhhccCCEEEEEcCCCCC--CcccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhc
Confidence             11100    0123544  4568876  333 46666654 33   3333322    3446665 222333333456554


Q ss_pred             cchhHHHHHHHHHHHHHHHhhc
Q psy13322        173 KDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       173 ~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      -+++.+.+=-...++|.+.|.+
T Consensus       322 ~~~~yl~~ri~qv~yl~~~L~~  343 (467)
T TIGR02617       322 MNLDWLAYRINQVQYLVNGLEE  343 (467)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh
Confidence            4444444433445566666643

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.94  E-value=0.00016  Score=62.55  Aligned_cols=132  Identities=21%  Similarity=0.256  Sum_probs=82.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc--ccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG--RTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g--r~G~~~~~~~~~~~~  117 (195)
                      .+.+|+.|.     ++++|||.=-.+|   ..+.    +++|.++|++||++||-|=+|+ +|  +.|+.      .|-.
T Consensus       112 ~~~ie~aIt-----~~tKAIipVhl~G---~~~d----m~~i~~la~~~~l~vIEDaAqa-~Ga~y~gk~------vGt~  172 (374)
T COG0399         112 PDLIEAAIT-----PRTKAIIPVHLAG---QPCD----MDAIMALAKRHGLPVIEDAAQA-HGATYKGKK------VGSF  172 (374)
T ss_pred             HHHHHHHcc-----cCCeEEEEehhcc---CCCC----HHHHHHHHHHcCCeEEEEcchh-ccCeecCcc------cccc
Confidence            688888887     3566777655554   3443    9999999999999999999998 54  33432      2333


Q ss_pred             cchhhhc----cccCCCCceEEEEecH-HHHHHhhccc-c---------------ccCCCchHHHHHHHHHHHHhhcchh
Q psy13322        118 PDIVTMA----KGIANGFPMGAVVTTT-EIAQVLTKAA-H---------------FNTFGGNPVGCVIASTVLDVIKDEE  176 (195)
Q Consensus       118 pdi~~~s----K~l~~G~~~g~v~~~~-~i~~~l~~~~-~---------------~~t~~~~p~~~~aa~aal~~~~~~~  176 (195)
                      -|+.+||    |.+++| -.|++++++ ++.+.++... |               ++.+-.+-+.++.+++-|+.++  +
T Consensus       173 Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~--~  249 (374)
T COG0399         173 GDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLD--E  249 (374)
T ss_pred             cceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHH--H
Confidence            4677775    999865 557888875 5766654321 1               1222234455555556665553  3


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy13322        177 LQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       177 ~~~~l~~~~~~l~~~L~  193 (195)
                      +.++=+++.++..+.|+
T Consensus       250 ~~~~R~~~a~~Y~~~l~  266 (374)
T COG0399         250 INERRREIAQIYAEALK  266 (374)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            44555555555555554

>PRK15029 arginine decarboxylase; Provisional

Probab=97.94  E-value=8.7e-05  Score=69.43  Aligned_cols=147  Identities=12%  Similarity=0.093  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhcCCC-----CC-eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-c
Q psy13322         40 YEQLVNAFQYNVPI-----TG-AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-E  112 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-----~~-~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~  112 (195)
                      .+.+++.|+++...     .+ .++||+-|-+  .|....    +++|.++|+++++.|++||+|.+.-.... .+.- .
T Consensus       292 ~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~-~~p~~s  364 (755)
T PRK15029        292 PETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYN----AKEAQDLLEKTSDRLHFDEAWYGYARFNP-IYADHY  364 (755)
T ss_pred             HHHHHHHHHhCchhhhccccCceEEEEECCCC--cceeeC----HHHHHHHHHhcCCeEEEECccccccccCc-cccccc
Confidence            37778888765311     11 2566666654  676666    99999999999999999999986433333 2221 1


Q ss_pred             cc-----C-CCcc-hhhhc--cccCCCC-ceEEEEecHH---HH-HHhhccc-cccCCCchHHHHHHHHHHHHhhcc---
Q psy13322        113 MH-----G-VSPD-IVTMA--KGIANGF-PMGAVVTTTE---IA-QVLTKAA-HFNTFGGNPVGCVIASTVLDVIKD---  174 (195)
Q Consensus       113 ~~-----~-~~pd-i~~~s--K~l~~G~-~~g~v~~~~~---i~-~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~---  174 (195)
                      ..     . .-+| ++|-|  |.+++ + ..|++-.+..   +- +.+.... ...|++.+-+-+++.-.+-..++.   
T Consensus       365 a~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~G  443 (755)
T PRK15029        365 AMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSG  443 (755)
T ss_pred             cccccccccCCCceEEEEchhhcccc-hhhhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhh
Confidence            11     1 3467 66667  88873 2 2233333211   11 2232222 223444443444444444444432   


Q ss_pred             hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .++.+++.+....+++.|++
T Consensus       444 ~~l~~~~i~~~~~~r~~l~~  463 (755)
T PRK15029        444 LSLTQEVIDEAVDFRQAMAR  463 (755)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            35566666777777777654

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=97.92  E-value=8.2e-05  Score=64.23  Aligned_cols=125  Identities=15%  Similarity=0.132  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCC
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGV  116 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~  116 (195)
                      .++.+++.+|...   .....=+..+-++..|++.     ++++.+++++||+.+|+|..=...-+  . -... +....
T Consensus       144 t~~~d~~~AIne~---ta~llkV~s~~~~f~~~l~-----~~~l~~ia~~~~lpvivD~aSg~~v~--~-e~~l~~~la~  212 (395)
T COG1921         144 THLKDYELAINEN---TALLLKVHSSNYGFTGMLS-----EEELVEIAHEKGLPVIVDLASGALVD--K-EPDLREALAL  212 (395)
T ss_pred             CCHHHHHHHhccC---CeeEEEEeecccccccccc-----HHHHHHHHHHcCCCEEEecCCccccc--c-ccchhHHHhc
Confidence            3468888888854   2444445566556666543     78899999999999999977432211  2 1123 33356


Q ss_pred             Ccchhhhc--cccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc
Q psy13322        117 SPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD  174 (195)
Q Consensus       117 ~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~  174 (195)
                      -+|+++||  |.|+ |-..|.+++++++++.+.+......+-.....+++..++|+....
T Consensus       213 GaDLV~~SgdKllg-GPqaGii~GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~y~~  271 (395)
T COG1921         213 GADLVSFSGDKLLG-GPQAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEAALELYLQ  271 (395)
T ss_pred             CCCEEEEecchhcC-CCccceEechHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHHcC
Confidence            78999998  8887 345678999999999988765544454567777888888886644

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=97.90  E-value=9.5e-05  Score=62.73  Aligned_cols=148  Identities=14%  Similarity=0.055  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--ccccCCCcccccccCC
Q psy13322         40 YEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG--FGRTGDNYWGFEMHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g--~gr~G~~~~~~~~~~~  116 (195)
                      +++++..+.... .......+++|.-..++| .++|.++|++|.++|++||+.|-+|=+.-.  .--.|.   ....+.-
T Consensus       114 ~e~v~~~i~~~d~~~~~~~~~~~e~~~te~G-tVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~---~~~~~~~  189 (342)
T COG2008         114 PEDVEAAIRPDDIHHAPTPLAVLENTATEGG-TVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGV---ALKTIKS  189 (342)
T ss_pred             HHHHHHhhcCCCcccCCCceEEEeeccCCCc-eecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCC---CHHHHHh
Confidence            577777666411 012566788888777777 567889999999999999999999955321  000111   1112222


Q ss_pred             CcchhhhccccCCCCceEEEE-ecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHH--HHHHHHHHHHHHH
Q psy13322        117 SPDIVTMAKGIANGFPMGAVV-TTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQ--YNCKQVSAQIIGY  191 (195)
Q Consensus       117 ~pdi~~~sK~l~~G~~~g~v~-~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~--~~l~~~~~~l~~~  191 (195)
                      --|+++|+-+-++|+|+++++ ++.+++..+....  .+.-+.-.-+-.++++.+|+.-  -.+.  .+..++..+|.+.
T Consensus       190 ~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~--~~~~~~~Han~mA~~La~~  267 (342)
T COG2008         190 YVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDD--VWRLAADHANAMAARLAEG  267 (342)
T ss_pred             hCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHh
Confidence            346666643334457766655 5667777665432  3333333334445555555432  1222  2333347777777


Q ss_pred             hh
Q psy13322        192 LR  193 (195)
Q Consensus       192 L~  193 (195)
                      |+
T Consensus       268 ~~  269 (342)
T COG2008         268 LE  269 (342)
T ss_pred             hh
Confidence            66

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=97.85  E-value=0.00034  Score=60.20  Aligned_cols=144  Identities=16%  Similarity=0.150  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCccccccc
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMH  114 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~  114 (195)
                      ..-+.+.++++.++++|+    .||. . +|..--.++    +++++++|++-|++|++|=+|- |+.-.|. + . ...
T Consensus       151 ~~IDyD~~~k~a~e~kPK----~ii~-G-~SaY~r~id----~~~~reIad~VGA~L~~DmAHiaGLVA~G~-~-p-~P~  217 (413)
T COG0112         151 GLIDYDEVEKLAKEVKPK----LIIA-G-GSAYSRPID----FKRFREIADEVGAYLMVDMAHVAGLIAGGV-H-P-NPL  217 (413)
T ss_pred             CccCHHHHHHHHHHhCCC----EEEE-C-ccccccccC----HHHHHHHHHHhCceEEehHHHHHHHHhccc-C-C-CCC
Confidence            345579999999988765    3332 2 122222233    9999999999999999999994 6644443 2 1 111


Q ss_pred             CCCcchhhhc--cccCCCCceEEEEecH-HHHHHhhccccccCCCchHHHHHHHH-HHHHhhcc---hhHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMA--KGIANGFPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIAS-TVLDVIKD---EELQYNCKQVSAQ  187 (195)
Q Consensus       115 ~~~pdi~~~s--K~l~~G~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~-aal~~~~~---~~~~~~l~~~~~~  187 (195)
                      . ..|++|-+  |+|-| =+.|.+++++ ++.+.++...+..+.+++-+-..||. .++....+   .+..+++-+|.+.
T Consensus       218 ~-~AdvVTtTTHKTlrG-PrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAka  295 (413)
T COG0112         218 P-HADVVTTTTHKTLRG-PRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKA  295 (413)
T ss_pred             C-ccceEeCCcccCCCC-CCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            2 25777665  99974 3557888885 89888888777777776555443333 34444333   3455667777777


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      |.+.|.+
T Consensus       296 LAe~l~~  302 (413)
T COG0112         296 LAEALKE  302 (413)
T ss_pred             HHHHHHH
Confidence            7777653

>PRK05367 glycine dehydrogenase; Provisional

Probab=97.80  E-value=0.00032  Score=67.42  Aligned_cols=144  Identities=17%  Similarity=0.207  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.++.+.  .++++|++-..-. .|....+   +++|.++|+++|+++++|-++.+ +..+.  ....  .+-.|
T Consensus       627 ~~~L~~~i~~~~--~~la~V~it~pst-~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~-al~~l--~~pg--~~GAD  695 (954)
T PRK05367        627 LDDLRAKAEEHA--DNLAAIMITYPST-HGVFEET---IREICEIVHEHGGQVYLDGANMN-AQVGL--ARPG--DIGAD  695 (954)
T ss_pred             HHHHHHHHhccC--CCeEEEEEEcCCC-CeeecCC---HHHHHHHHHHcCCEEEEECcChh-hccCC--CChh--hcCCC
Confidence            788888887542  3677776655333 3544333   99999999999999999999962 12221  0011  23458


Q ss_pred             hhhhc--cccC----CCCc-eEEEEecHHHHHHhhccc-----c---ccCCCchHH----HHHHHHHHHHhhcchhHHHH
Q psy13322        120 IVTMA--KGIA----NGFP-MGAVVTTTEIAQVLTKAA-----H---FNTFGGNPV----GCVIASTVLDVIKDEELQYN  180 (195)
Q Consensus       120 i~~~s--K~l~----~G~~-~g~v~~~~~i~~~l~~~~-----~---~~t~~~~p~----~~~aa~aal~~~~~~~~~~~  180 (195)
                      +++++  |.|+    +|-| +|.+.+++.+...+....     .   ..+....+.    ....+...+..+-.+++++.
T Consensus       696 i~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~  775 (954)
T PRK05367        696 VSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQA  775 (954)
T ss_pred             EEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence            88776  9885    2334 667777766665553321     0   111222223    22223333444444666666


Q ss_pred             HH---HHHHHHHHHhhc
Q psy13322        181 CK---QVSAQIIGYLRV  194 (195)
Q Consensus       181 l~---~~~~~l~~~L~~  194 (195)
                      .+   .+.+|+.++|++
T Consensus       776 a~~~~~~A~Yl~~~L~~  792 (954)
T PRK05367        776 TEVAILNANYIAKRLKD  792 (954)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            66   888899888854

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=97.79  E-value=0.00081  Score=55.56  Aligned_cols=100  Identities=14%  Similarity=0.207  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ..|.+-+++..++.+  +.++..++.-+-|..|.+..    -++++++|+++|+.+++.=+|+ .||.-     ...-.+
T Consensus       140 e~y~~viee~~~~~g--~~~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp-----vs~ke~  207 (382)
T COG1103         140 EGYAEVIEEVKDEGG--DPPALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP-----VSGKEI  207 (382)
T ss_pred             HHHHHHHHHHHhccC--CCceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc-----cccccc
Confidence            456666676666543  35777777778888998777    8999999999999999999998 66643     222356


Q ss_pred             Ccchhhhc--cccCCCCceEEEEecHHHHHHhhc
Q psy13322        117 SPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTK  148 (195)
Q Consensus       117 ~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~  148 (195)
                      .+|+++-|  |+|+..-|+|.+..++++.+....
T Consensus       208 g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r  241 (382)
T COG1103         208 GADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLR  241 (382)
T ss_pred             CCCEEEecCccchhccCCeeEEeehhHHHHHHHh
Confidence            78988877  999965599999999998876543

>PLN02880 tyrosine decarboxylase

Probab=97.79  E-value=0.00015  Score=65.02  Aligned_cols=151  Identities=18%  Similarity=0.100  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-
Q psy13322         39 FYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-  116 (195)
                      +.+.|++.|++.... ..+.+|+...-....|.+-+    |++|.++|++||+++.+|=+|+|+-..-. .+-....|+ 
T Consensus       222 d~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~-~~~~~l~gie  296 (490)
T PLN02880        222 APELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGSACICP-EYRHYIDGVE  296 (490)
T ss_pred             CHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHHHHhCH-HHHHHhcCch
Confidence            367888888753211 24556666665556788777    99999999999999999988886532211 001112254 


Q ss_pred             Ccchhhhc--cccCCCCceEEEEecHH--HHHHhhccc-c--------ccCC--------CchHHHHHHHHHHHHhhcch
Q psy13322        117 SPDIVTMA--KGIANGFPMGAVVTTTE--IAQVLTKAA-H--------FNTF--------GGNPVGCVIASTVLDVIKDE  175 (195)
Q Consensus       117 ~pdi~~~s--K~l~~G~~~g~v~~~~~--i~~~l~~~~-~--------~~t~--------~~~p~~~~aa~aal~~~~~~  175 (195)
                      ..|.+++.  |.+...+..|.++.++.  +.+.+.... +        ..++        .+..+.......+|+.+-.+
T Consensus       297 ~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~  376 (490)
T PLN02880        297 EADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVE  376 (490)
T ss_pred             hcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHH
Confidence            56777774  98887778888888742  323332111 0        0000        11112233444556666556


Q ss_pred             hHHHHHH---HHHHHHHHHhhc
Q psy13322        176 ELQYNCK---QVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~---~~~~~l~~~L~~  194 (195)
                      ++.++++   ++.+++.+.|++
T Consensus       377 g~~~~i~~~~~lA~~~~~~l~~  398 (490)
T PLN02880        377 NLQSYIRNHIKLAKEFEQLVAQ  398 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            6777777   888888888764

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=97.73  E-value=0.00054  Score=60.51  Aligned_cols=145  Identities=14%  Similarity=0.052  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCccc---cCCCcc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN------NGLFISDEVQTGFGR---TGDNYW  109 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~------~~llI~DEv~~g~gr---~G~~~~  109 (195)
                      ++++|++.|.+     ++.+|++--+.++.|.+-+    +++|.++|+++      |+++.+|=+|+|+-.   .++..+
T Consensus       175 d~~~L~~~i~~-----~t~lV~~t~g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~  245 (431)
T TIGR01788       175 DPEQVVEAVDE-----NTIGVVCILGTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEW  245 (431)
T ss_pred             CHHHHHHHHhh-----CCeEEEEEeCCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchh
Confidence            46888888862     4557888778888999888    99999999999      999999999987421   232111


Q ss_pred             cccccCCCcchhhhc--cccCCCCceEEEEecHH--HHHHhhcc---c----cccCCCch-HH-HHHHHHHHHHhhcc--
Q psy13322        110 GFEMHGVSPDIVTMA--KGIANGFPMGAVVTTTE--IAQVLTKA---A----HFNTFGGN-PV-GCVIASTVLDVIKD--  174 (195)
Q Consensus       110 ~~~~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~--i~~~l~~~---~----~~~t~~~~-p~-~~~aa~aal~~~~~--  174 (195)
                      .+.  ....|.+++|  |-+.+-..+|+++.++.  +.+.+...   .    ...+..++ +. ..++...+|..+..  
T Consensus       246 ~~~--~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G  323 (431)
T TIGR01788       246 DFR--LPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREG  323 (431)
T ss_pred             hcC--CCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHH
Confidence            111  1245677776  86533334788887654  33433211   0    01122211 22 33334445554433  


Q ss_pred             -hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 -EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 -~~~~~~l~~~~~~l~~~L~~  194 (195)
                       ++..++..++.++|.++|++
T Consensus       324 ~~~i~~~~~~la~~l~~~L~~  344 (431)
T TIGR01788       324 YRKIMQNSLDVARYLAEEIAK  344 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence             45667788888899888875

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=97.72  E-value=8.4e-05  Score=63.53  Aligned_cols=84  Identities=21%  Similarity=0.171  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.++     .+.++|.+|++-+..++++.    +++|.++|++||+.+|+|-..+.-      + -++-...-.|
T Consensus       137 ~~~~~~aI~-----~nTkavf~EtigNP~~~v~D----ie~ia~iAh~~gvpliVDNT~atp------y-l~rP~~hGAD  200 (426)
T COG2873         137 PENFEAAID-----ENTKAVFAETIGNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFATP------Y-LCRPIEHGAD  200 (426)
T ss_pred             HHHHHHHhC-----cccceEEEEeccCCCccccC----HHHHHHHHHHcCCcEEEecCCCcc------e-ecchhhcCCC
Confidence            578888877     47889999999999998887    999999999999999999875421      1 1222334557


Q ss_pred             hhh--hccccCC-CCceEEEEec
Q psy13322        120 IVT--MAKGIAN-GFPMGAVVTT  139 (195)
Q Consensus       120 i~~--~sK~l~~-G~~~g~v~~~  139 (195)
                      |++  ++|-+|| |-.+|.+++.
T Consensus       201 IVvHS~TK~igGhGt~iGG~iVD  223 (426)
T COG2873         201 IVVHSATKYIGGHGTAIGGVIVD  223 (426)
T ss_pred             EEEEeecccccCCccccceEEEe
Confidence            764  4699984 6666665553

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=97.70  E-value=0.00051  Score=59.85  Aligned_cols=126  Identities=15%  Similarity=0.047  Sum_probs=79.2

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh--ccccCCC--
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM--AKGIANG--  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~--sK~l~~G--  130 (195)
                      ++.+|.+|+.-+..-.+..    +++|.++++++|+++|+|.....    +-   -++.+.+-.||++-  .|.++|.  
T Consensus       149 ~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfat----P~---~q~PL~~GaDIVvhSaTKyl~GHsD  217 (396)
T COG0626         149 NTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTFAT----PV---LQRPLELGADIVVHSATKYLGGHSD  217 (396)
T ss_pred             CceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCccc----cc---ccChhhcCCCEEEEeccccccCCcc
Confidence            7889999999887766666    99999999999999999998652    11   12222334577755  5999964  


Q ss_pred             CceEEEEecH-HHHHHhhcccc-ccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        131 FPMGAVVTTT-EIAQVLTKAAH-FNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       131 ~~~g~v~~~~-~i~~~l~~~~~-~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      .-+|.+++++ ++.+.+..... ......+|+.+.-.+..|+.+.  -.+++..+|...+.+.|+
T Consensus       218 vl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL~--~Rm~~~~~nA~~IA~~L~  280 (396)
T COG0626         218 VLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLA--LRMERHNENALKIAEFLA  280 (396)
T ss_pred             eeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHh
Confidence            3556677666 45554422211 1223346777766666665542  233445555555555543

>PLN02724 Molybdenum cofactor sulfurase

Probab=97.66  E-value=0.00057  Score=64.85  Aligned_cols=131  Identities=15%  Similarity=0.125  Sum_probs=88.5

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--------CCEEEEeccccCccccCCCcccccccCCCcchhhhc--
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--------NGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--  124 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--------~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--  124 (195)
                      ++..|.+--+.+..|.+.+    ++.+..+++..        ++++++|=+|+ +|..     .+....+.+|++++|  
T Consensus       192 ~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~-----piDv~~~~~Dfl~~S~H  261 (805)
T PLN02724        192 AYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS-----PPDLSRYPADFVVVSFY  261 (805)
T ss_pred             CcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC-----CCChhhcCCCEEEEecc
Confidence            5568888888889999888    66554444432        35799998887 4322     222224568999998  


Q ss_pred             cccCCCCceEEEEecHHHHHHhhcccccc-C--------------------C---CchHHHHHHHHHHHHhhcc---hhH
Q psy13322        125 KGIANGFPMGAVVTTTEIAQVLTKAAHFN-T--------------------F---GGNPVGCVIASTVLDVIKD---EEL  177 (195)
Q Consensus       125 K~l~~G~~~g~v~~~~~i~~~l~~~~~~~-t--------------------~---~~~p~~~~aa~aal~~~~~---~~~  177 (195)
                      |-+|+=.-+|++.+++++.+.+.....+. +                    |   ..|..++++..++++.+.+   +..
T Consensus       262 K~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I  341 (805)
T PLN02724        262 KIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAI  341 (805)
T ss_pred             eeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHH
Confidence            97762122789989988777665432111 1                    1   2356677777788887754   567


Q ss_pred             HHHHHHHHHHHHHHhhcC
Q psy13322        178 QYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~l  195 (195)
                      .++.++..++|.+.|+++
T Consensus       342 ~~~~~~L~~~l~~~L~~l  359 (805)
T PLN02724        342 AMHTWALTHYVANSLRNL  359 (805)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            788999999999988753

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=97.66  E-value=0.0014  Score=62.75  Aligned_cols=144  Identities=17%  Similarity=0.121  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-ccccCCCcccccccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~gr~G~~~~~~~~~~~~  117 (195)
                      ++++|++.+++++  +++++|++..... .|.+.++   +++|.++|+++|.++++|=++.. .+  +.    ...-.+.
T Consensus       614 Dle~L~~~i~~~~--~~taaV~iT~pst-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~--~l----~~Pg~~G  681 (939)
T TIGR00461       614 DLVDLKNKAEQHG--DELAAVMVTYPST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQV--GL----TSPGDLG  681 (939)
T ss_pred             CHHHHHHHHhhcC--CceEEEEEEeCCc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhCC--CC----CCccccC
Confidence            4789999998754  4788888766544 5665554   89999999999999999998852 21  11    0111245


Q ss_pred             cchhhhc--cccC-----CCCceEEEEecHHHHHHhhcccc----------------ccCCCchHHHHHHHHHHHHhhcc
Q psy13322        118 PDIVTMA--KGIA-----NGFPMGAVVTTTEIAQVLTKAAH----------------FNTFGGNPVGCVIASTVLDVIKD  174 (195)
Q Consensus       118 pdi~~~s--K~l~-----~G~~~g~v~~~~~i~~~l~~~~~----------------~~t~~~~p~~~~aa~aal~~~~~  174 (195)
                      .|+++++  |+|+     ||--+|.+.+++.+...+.....                ++...++...+..+...|..+-.
T Consensus       682 aDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~  761 (939)
T TIGR00461       682 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGN  761 (939)
T ss_pred             CCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCH
Confidence            6888885  9887     33347888888776655532110                01123344444555666666655


Q ss_pred             hhH---HHHHHHHHHHHHHHhhc
Q psy13322        175 EEL---QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ~~~---~~~l~~~~~~l~~~L~~  194 (195)
                      +++   .+..-.+..|+.++|++
T Consensus       762 ~GL~~~a~~ailnAnYl~~rL~~  784 (939)
T TIGR00461       762 EGLPKASVVAILNANYMATRLKD  784 (939)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Confidence            544   34455677788888753

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG1549|consensus

Probab=97.58  E-value=0.00037  Score=60.74  Aligned_cols=85  Identities=14%  Similarity=0.222  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++.|++.|+     .++.+|.+..|.++.|.+.|    +++|.++|+++++.+.+|=+|+ +   |+-  ...-..+.+
T Consensus       170 d~~~~~~~i~-----~~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa-v---G~i--~vDV~eln~  234 (428)
T KOG1549|consen  170 DISKLREAIR-----SKTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA-V---GKI--PVDVQELNA  234 (428)
T ss_pred             cHHHHHHhcC-----CCceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh-c---CCc--cccHHHcCc
Confidence            3566666666     48889999999999999999    9999999999999999999998 4   431  233335778


Q ss_pred             chhhhc--cccC-CCCceEEEEecH
Q psy13322        119 DIVTMA--KGIA-NGFPMGAVVTTT  140 (195)
Q Consensus       119 di~~~s--K~l~-~G~~~g~v~~~~  140 (195)
                      |.++++  |.+| .|  +|++-+++
T Consensus       235 D~~s~s~HK~ygp~~--iGaLYvr~  257 (428)
T KOG1549|consen  235 DFLSISAHKIYGPPG--IGALYVRR  257 (428)
T ss_pred             hheeeecccccCCCc--ceEEEEcc
Confidence            988887  9888 56  78877775

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=97.55  E-value=0.00079  Score=58.25  Aligned_cols=122  Identities=13%  Similarity=0.070  Sum_probs=79.0

Q ss_pred             EEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccCCCCceEEE
Q psy13322         59 LIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIANGFPMGAV  136 (195)
Q Consensus        59 vivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~~G~~~g~v  136 (195)
                      |.+--+-+.+|.+.+    +++|.+  ++||+++|+|=+|+ +|..   ..-..  .  .|++++|  |.|++-.-+|.+
T Consensus       140 V~~~h~~t~tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~~---pidv~--~--iD~~~~s~~K~l~~P~G~g~l  205 (378)
T PRK03080        140 VVFTWNGTTTGVRVP----VARWIG--ADREGLTICDATSA-AFAL---PLDWS--K--LDVYTFSWQKVLGGEGGHGMA  205 (378)
T ss_pred             EEEEecCCccceecc----chhhcc--ccCCCeEEEecccc-cccC---CCCHH--H--CcEEEEehhhhCCCCCceEEE
Confidence            445445556788887    888877  78999999998887 5422   11122  2  3888776  998742227899


Q ss_pred             EecHHHHHHhhccc----------------------cccCCC-chHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHH
Q psy13322        137 VTTTEIAQVLTKAA----------------------HFNTFG-GNPVGCVIASTVLDVIKD----EELQYNCKQVSAQII  189 (195)
Q Consensus       137 ~~~~~i~~~l~~~~----------------------~~~t~~-~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~  189 (195)
                      ..+++..+.+....                      ...|.+ .+..+..+..++|+.+.+    +++.++.+++.++++
T Consensus       206 ~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~  285 (378)
T PRK03080        206 ILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLY  285 (378)
T ss_pred             EECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            99998877654320                      011222 233455555778887743    455677788888888


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       286 ~~l~~  290 (378)
T PRK03080        286 DWAEK  290 (378)
T ss_pred             HHHHh
Confidence            88764

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.52  E-value=0.001  Score=63.54  Aligned_cols=144  Identities=14%  Similarity=0.102  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cCC
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGV  116 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~~  116 (195)
                      -++++|+++++++.  +++++|++....+.++. .   +-+++|.++++++|+++++|=++. .+..+     ... -.+
T Consensus       626 iDle~L~a~I~~~~--~~laaVmiT~Pnt~Gv~-e---~~V~eI~~iah~~Galv~vDgA~~-~a~~~-----l~~Pg~~  693 (954)
T PRK12566        626 VDLDDLKAKAAAAG--DRLSCLMITYPSTHGVY-E---EGIREICEVVHQHGGQVYMDGANL-NAQVG-----LARPADI  693 (954)
T ss_pred             cCHHHHHHHhhccC--CCEEEEEEEecCcCcee-c---chHHHHHHHHHHcCCEEEEEeeCh-hhccC-----CCChhhc
Confidence            34799999998654  58888888776554433 2   239999999999999999999886 32211     111 134


Q ss_pred             Ccchhhhc--cccC----CCCc-eEEEEecHHHHHHhhccc-------------cccCCCchHHHHHHHHHHHHhhcchh
Q psy13322        117 SPDIVTMA--KGIA----NGFP-MGAVVTTTEIAQVLTKAA-------------HFNTFGGNPVGCVIASTVLDVIKDEE  176 (195)
Q Consensus       117 ~pdi~~~s--K~l~----~G~~-~g~v~~~~~i~~~l~~~~-------------~~~t~~~~p~~~~aa~aal~~~~~~~  176 (195)
                      -.|+++++  |.|+    +|.| +|.+.+.+.+...+....             .+....++.....++..-++.+-.+ 
T Consensus       694 GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-  772 (954)
T PRK12566        694 GADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQ-  772 (954)
T ss_pred             CCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHH-
Confidence            55888775  9885    3444 566666776666555321             1111222223333444444444333 


Q ss_pred             HHH---HHHHHHHHHHHHhhc
Q psy13322        177 LQY---NCKQVSAQIIGYLRV  194 (195)
Q Consensus       177 ~~~---~l~~~~~~l~~~L~~  194 (195)
                      +.+   ....+..|+.++|.+
T Consensus       773 Lk~aa~~ailnAnYla~rL~~  793 (954)
T PRK12566        773 LADASEVAILSANYLANQLGG  793 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHhHh
Confidence            322   224578888888753

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=97.51  E-value=0.0014  Score=56.38  Aligned_cols=153  Identities=16%  Similarity=0.303  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCC-ccccccc-CC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDN-YWGFEMH-GV  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~-~~~~~~~-~~  116 (195)
                      +++.+-..|++...  ....++-.+-.+.+|. -++.+.+++|.++.++.+.+-++|=+|.||+..... -++...+ ..
T Consensus       158 df~~mla~L~~a~~--~~vvLLH~CcHNPTG~-D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~  234 (396)
T COG1448         158 DFDGMLADLKTAPE--GSVVLLHGCCHNPTGI-DPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEV  234 (396)
T ss_pred             cHHHHHHHHHhCCC--CCEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHh
Confidence            35666666666542  3334555556778885 557788999999999999999999999999642210 0111111 11


Q ss_pred             Cc-chh--hhccccC-CCCceEEEE--e-cHHHHHHhhccc---cccCCCchH-HHHHHHHHHHHh--h----c-c-hhH
Q psy13322        117 SP-DIV--TMAKGIA-NGFPMGAVV--T-TTEIAQVLTKAA---HFNTFGGNP-VGCVIASTVLDV--I----K-D-EEL  177 (195)
Q Consensus       117 ~p-di~--~~sK~l~-~G~~~g~v~--~-~~~i~~~l~~~~---~~~t~~~~p-~~~~aa~aal~~--~----~-~-~~~  177 (195)
                      -+ =++  .+||.|| =|-|+|+..  + .++..+.+....   .-.+++.+| .++..+...|+-  +    + + +++
T Consensus       235 ~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~M  314 (396)
T COG1448         235 GPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEM  314 (396)
T ss_pred             CCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            22 233  5689998 566666533  2 334444433221   234455444 344444444431  1    1 1 578


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      ++++.+++..|++.|++
T Consensus       315 r~Ri~~mR~~lv~~L~~  331 (396)
T COG1448         315 RQRILEMRQALVDALKA  331 (396)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88999999999998875

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=97.50  E-value=0.001  Score=57.35  Aligned_cols=123  Identities=15%  Similarity=0.181  Sum_probs=77.9

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC--CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA--NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~--~G  130 (195)
                      +++.|.+--.-...|.+.+    +++|   ++++|+++|+|=+++ +|..   ....+    .-|++++|  |.++  +|
T Consensus       128 ~~~lV~~~h~et~tG~~~p----i~~I---~~~~g~~~iVDavqs-~g~~---~idv~----~~D~~~~s~~K~lg~~~G  192 (361)
T TIGR01366       128 GVDVIAWAHNETSTGVAVP----VRRP---EGSDDALVVIDATSG-AGGL---PVDIA----ETDVYYFAPQKNFASDGG  192 (361)
T ss_pred             CCCEEEEcccCCccceecc----cccc---cccCCCeEEEEcCcc-ccCC---CCCHH----HCCEEEEEchhhcCCCCc
Confidence            5666766666666787777    5544   689999999999988 5321   11122    14888886  9998  34


Q ss_pred             CceEEEEecHHHHHHhhccc--------------------cccCCCch-HHHHHHHHHHHHhhcc----hhHHHHHHHHH
Q psy13322        131 FPMGAVVTTTEIAQVLTKAA--------------------HFNTFGGN-PVGCVIASTVLDVIKD----EELQYNCKQVS  185 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~--------------------~~~t~~~~-p~~~~aa~aal~~~~~----~~~~~~l~~~~  185 (195)
                        ++.++.++++.+.+....                    ...|.+.+ ...+.+..++++.+.+    +...++.++..
T Consensus       193 --l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~  270 (361)
T TIGR01366       193 --LWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSS  270 (361)
T ss_pred             --eEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence              566677887665554210                    01333333 3444466778887743    34557778888


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      +++++.|++
T Consensus       271 ~~l~~~l~~  279 (361)
T TIGR01366       271 SRLYSWAQE  279 (361)
T ss_pred             HHHHHHHHh
Confidence            888877765

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PLN02263 serine decarboxylase

Probab=97.43  E-value=0.0062  Score=54.33  Aligned_cols=149  Identities=15%  Similarity=0.047  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCC-----EEEEeccccCcccc-CCCccccc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNG-----LFISDEVQTGFGRT-GDNYWGFE  112 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~-----llI~DEv~~g~gr~-G~~~~~~~  112 (195)
                      +.+.|++.|++..  .+..+|+.-.-..+.|.+=+    +++|.++|++||+     +|=+|=++.|+-.. -+..-.+.
T Consensus       214 D~~aL~~aI~~d~--~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~d  287 (470)
T PLN02263        214 DCADFKAKLLANK--DKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVT  287 (470)
T ss_pred             cHHHHHHHHHhCC--CCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccC
Confidence            3688888887643  24555555544445687666    9999999999997     99999999885320 01000011


Q ss_pred             ccCCCcchhhhc--cccCCCCceEEEEecHHHHHHhhccc-----cccCCCc--hHHHHHHHHHHHHhhcch---hHHHH
Q psy13322        113 MHGVSPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAA-----HFNTFGG--NPVGCVIASTVLDVIKDE---ELQYN  180 (195)
Q Consensus       113 ~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~-----~~~t~~~--~p~~~~aa~aal~~~~~~---~~~~~  180 (195)
                       +....|-++++  |-++.-++.|.++.++...+.+....     ...|..+  +-...+...++|+....+   +..++
T Consensus       288 -f~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~  366 (470)
T PLN02263        288 -FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQK  366 (470)
T ss_pred             -CCcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHH
Confidence             11124555554  88877788999999976554443221     1112222  212345555666665443   45566


Q ss_pred             HHHHHHHHHHHhhc
Q psy13322        181 CKQVSAQIIGYLRV  194 (195)
Q Consensus       181 l~~~~~~l~~~L~~  194 (195)
                      .-++.++|.+.|++
T Consensus       367 ~~~~A~~l~~~l~~  380 (470)
T PLN02263        367 CLRNAHYLKDRLRE  380 (470)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66778888888875

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=97.42  E-value=0.0034  Score=54.46  Aligned_cols=150  Identities=15%  Similarity=0.177  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhcCCCCCeE-EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-C
Q psy13322         40 YEQLVNAFQYNVPITGAA-ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-S  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~a-avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~  117 (195)
                      .++|++.|++...++.+- +|+.-.--...|.+=+    +++|.++|++|+++|=+|=++.|....-. ..-....++ .
T Consensus       178 ~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i~~~~~~wlHVDaA~gg~~~~~~-~~~~~~~gi~~  252 (373)
T PF00282_consen  178 IEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIADICEKYNIWLHVDAAYGGSALLSP-EYRHLLFGIER  252 (373)
T ss_dssp             HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHHHHHHHCT-EEEEEETTGGGGGGHC-TTGGGGTTGGG
T ss_pred             HHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHhhhccccceeeeecccccccccccc-ccccccccccc
Confidence            678888776543223444 3444333445677655    99999999999999999999887322211 100111233 3


Q ss_pred             cchhhhc--cccCCCCceEEEEecHH--HHHHhhccc---c-------------ccCCC-chHHHHHHHHHHHHhhcc--
Q psy13322        118 PDIVTMA--KGIANGFPMGAVVTTTE--IAQVLTKAA---H-------------FNTFG-GNPVGCVIASTVLDVIKD--  174 (195)
Q Consensus       118 pdi~~~s--K~l~~G~~~g~v~~~~~--i~~~l~~~~---~-------------~~t~~-~~p~~~~aa~aal~~~~~--  174 (195)
                      .|-+++.  |.++.-++.|.++.++.  +.+.+....   .             ..|.. +-.+.......+|+.+-.  
T Consensus       253 adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G  332 (373)
T PF00282_consen  253 ADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREG  332 (373)
T ss_dssp             ESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHH
Confidence            4666664  98887778899988874  333331110   0             11222 224555556666665543  


Q ss_pred             -hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 -EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 -~~~~~~l~~~~~~l~~~L~~  194 (195)
                       .+.+++.-++.++|.+.|++
T Consensus       333 ~~~~i~~~~~~a~~l~~~l~~  353 (373)
T PF00282_consen  333 YRERIRRCIELARYLADRLRK  353 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence             45666677788888888875

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02590 probable tyrosine decarboxylase

Probab=97.32  E-value=0.0041  Score=56.44  Aligned_cols=151  Identities=12%  Similarity=0.026  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-
Q psy13322         39 FYEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-  116 (195)
                      +.+.|++.|++....+ ...+|+...-....|.+=+    |++|.++|++||+||=+|=++.|+...-..+. ....|+ 
T Consensus       270 d~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r-~~~~Gie  344 (539)
T PLN02590        270 PPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGNACICPEYR-KFIDGIE  344 (539)
T ss_pred             CHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCeEEEecchhhhhhcChhhH-HHhcCCc
Confidence            3688888887542212 3445555554555687766    99999999999999999999887643221110 011244 


Q ss_pred             Ccchhhhc--cccCCCCceEEEEecHH--HHHHhhccc----c------------ccCC-CchHHHHHHHHHHHHhhcc-
Q psy13322        117 SPDIVTMA--KGIANGFPMGAVVTTTE--IAQVLTKAA----H------------FNTF-GGNPVGCVIASTVLDVIKD-  174 (195)
Q Consensus       117 ~pdi~~~s--K~l~~G~~~g~v~~~~~--i~~~l~~~~----~------------~~t~-~~~p~~~~aa~aal~~~~~-  174 (195)
                      ..|-+++.  |.+...+..|.+++++.  +.+.+....    +            ..+. .+-.+.......+|+.+-. 
T Consensus       345 ~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~  424 (539)
T PLN02590        345 NADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSE  424 (539)
T ss_pred             cCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHH
Confidence            45766664  88887788898888753  333332110    0            0011 1223455556666666543 


Q ss_pred             --hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 --EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 --~~~~~~l~~~~~~l~~~L~~  194 (195)
                        .+.+++.-++.++|.+.|++
T Consensus       425 G~~~~i~~~~~lA~~~~~~l~~  446 (539)
T PLN02590        425 NLRNFIRDHVNLAKHFEDYVAQ  446 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence              35556666777888887764

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=97.25  E-value=0.0087  Score=53.34  Aligned_cols=148  Identities=15%  Similarity=0.047  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc-cCCCccccc-ccC
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR-TGDNYWGFE-MHG  115 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr-~G~~~~~~~-~~~  115 (195)
                      -+.++|++.+.+.... .  +||.-.-....|.+=+    +++|.++|+++++++-+|=+.+|+-. .-...  .. .++
T Consensus       193 id~~~l~~~i~~~t~~-g--~vV~~aGtT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~--~~~~f~  263 (460)
T COG0076         193 IDVDALEEAIDENTIG-G--VVVGTAGTTDTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEPD--GRWDFG  263 (460)
T ss_pred             cCHHHHHHHHHhhccC-c--eEEEEecCCCCCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCcc--chhhcC
Confidence            3478999999865321 1  2443333344565555    99999999999999999999888632 11100  01 124


Q ss_pred             C-Ccchhhhc--cccCCCCceEEEEecHH--HHHHhhccc--------cccCC--CchHHHHHHHHHHHHhhcch---hH
Q psy13322        116 V-SPDIVTMA--KGIANGFPMGAVVTTTE--IAQVLTKAA--------HFNTF--GGNPVGCVIASTVLDVIKDE---EL  177 (195)
Q Consensus       116 ~-~pdi~~~s--K~l~~G~~~g~v~~~~~--i~~~l~~~~--------~~~t~--~~~p~~~~aa~aal~~~~~~---~~  177 (195)
                      + ..|-++++  |-+-.=++.|+++.+++  +.+.+....        ...|.  +.+....++..+++..+..+   .+
T Consensus       264 l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l  343 (460)
T COG0076         264 LEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKL  343 (460)
T ss_pred             CCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHH
Confidence            4 34556665  65544456788988764  555443211        11121  11223556666777777444   45


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      .++..++.++|.+.|++
T Consensus       344 ~~~~~~~a~~la~~l~~  360 (460)
T COG0076         344 LDRTLELARYLAEELEK  360 (460)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            56666888999888875

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=97.17  E-value=0.0011  Score=56.97  Aligned_cols=122  Identities=21%  Similarity=0.185  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhcCCCCCeEEE-EEcc----cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC------ccccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAAL-IAES----IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG------FGRTGDN  107 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aav-ivEp----v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g------~gr~G~~  107 (195)
                      .+++.++.|.     ++++++ -+.+    ++|-.+. +.    ++++.+++++|++++|.|=.-..      +|..+. 
T Consensus       125 ~~~Dye~AI~-----e~Ta~ll~Vh~Sn~~i~GFt~~-~~----~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~E-  193 (367)
T PF03841_consen  125 HLSDYEKAIT-----ENTAALLKVHTSNFRIQGFTGE-VS----LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDE-  193 (367)
T ss_dssp             ----------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT------
T ss_pred             cccccccccc-----cccccccccccccccccccccc-cc----HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccc-
Confidence            3566666665     244444 4542    2332232 22    89999999999999999954311      111111 


Q ss_pred             cccccccCCCcchhhhc--cccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh
Q psy13322        108 YWGFEMHGVSPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI  172 (195)
Q Consensus       108 ~~~~~~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~  172 (195)
                      ..-.+....-.|+++||  |-+|| -..|.+++++++++.+++....-.+-..-+.+++..++|+..
T Consensus       194 p~v~~~~~~GaDlV~fSGdKlLGG-PQaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y  259 (367)
T PF03841_consen  194 PTVQEYLAAGADLVTFSGDKLLGG-PQAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLY  259 (367)
T ss_dssp             -----CCCCT-SEEEEETTSSSSS--S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH-
T ss_pred             cHHHHHhhcCCCEEEEECCCcCCC-CCeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHH
Confidence            11112234467999997  88874 346899999999999886544445555778888888888764

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK13578 ornithine decarboxylase; Provisional

Probab=97.15  E-value=0.0022  Score=59.80  Aligned_cols=144  Identities=14%  Similarity=0.081  Sum_probs=74.2

Q ss_pred             HHHHHHHHhcCCC-----C-CeEEEEEcccCCCCCcccCCHHHHHHHHHH-HHHcCCEEEEeccccCccccCCCc--ccc
Q psy13322         41 EQLVNAFQYNVPI-----T-GAAALIAESIQGVSGVKEFPRYFLRRAYEL-IKSNNGLFISDEVQTGFGRTGDNY--WGF  111 (195)
Q Consensus        41 ~~l~~~l~~~~~~-----~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l-~~~~~~llI~DEv~~g~gr~G~~~--~~~  111 (195)
                      +.+++.|+++.++     . -.++||+-|-+  +|....    ++.|.++ |++++ .|++||+|.+.-.....+  +.-
T Consensus       263 ~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd----i~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~  335 (720)
T PRK13578        263 EYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN----ARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSP  335 (720)
T ss_pred             HHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----HHHHHHHhhccCC-cEEEeCcchhhhccCcccccCCh
Confidence            5677777766221     1 24466666655  676666    8889888 78888 999999998742222211  111


Q ss_pred             cccCCCcc----hhhhc--cccCCCC-ceEEEEecHHHH---------HHhhccccccCCCchHHHHHHHHHH-HHhhc-
Q psy13322        112 EMHGVSPD----IVTMA--KGIANGF-PMGAVVTTTEIA---------QVLTKAAHFNTFGGNPVGCVIASTV-LDVIK-  173 (195)
Q Consensus       112 ~~~~~~pd----i~~~s--K~l~~G~-~~g~v~~~~~i~---------~~l~~~~~~~t~~~~p~~~~aa~aa-l~~~~-  173 (195)
                      ......+|    ++|-|  |.+++ + ..|++-.+...+         +.+......++++++...+.|++-+ -..++ 
T Consensus       336 ~al~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmASLDva~~~m~~  414 (720)
T PRK13578        336 LLLELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFAALDVNAKMHEG  414 (720)
T ss_pred             hhhhcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence            11234556    66667  88873 3 234443332111         2233222222222233333333322 33332 


Q ss_pred             --chhHHHHHHHHHHHHHHHh
Q psy13322        174 --DEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       174 --~~~~~~~l~~~~~~l~~~L  192 (195)
                        -..+.+...+....+++.|
T Consensus       415 ~~G~~l~~~~i~~a~~~R~~l  435 (720)
T PRK13578        415 ESGRRLWMECVKLGIEARKLI  435 (720)
T ss_pred             hhCHHHHHHHHHHHHHHHHHH
Confidence              2455666666666666665

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=97.12  E-value=0.004  Score=53.68  Aligned_cols=111  Identities=10%  Similarity=0.143  Sum_probs=72.1

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC-CCCceEEEEecHHH
Q psy13322         66 GVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA-NGFPMGAVVTTTEI  142 (195)
Q Consensus        66 s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~-~G~~~g~v~~~~~i  142 (195)
                      ..+|...++   +++|      ||+++|+|=+++ +|-  . ..-.+.+    |++++|  |.+| .|  +|.+.+++++
T Consensus       152 TstGv~~~~---i~~i------~g~l~vVDavss-~g~--~-~idv~~~----d~~~~ssqK~lgP~G--lg~l~~s~~~  212 (360)
T PRK05355        152 TIDGTEFHE---LPDT------GDVPLVADMSSD-ILS--R-PIDVSKF----GLIYAGAQKNIGPAG--LTIVIVREDL  212 (360)
T ss_pred             CcceEecCc---cccc------CCCcEEEEcCcc-ccC--c-cCCHHHc----cEEEEeccccccCCc--eEEEEECHHH
Confidence            345666532   4444      899999999987 432  1 1112222    477776  9997 45  7899999988


Q ss_pred             HHHhhcc-----------ccccCC-CchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhcC
Q psy13322        143 AQVLTKA-----------AHFNTF-GGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       143 ~~~l~~~-----------~~~~t~-~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      .+.+...           ....+. ..|...+.+..++|+.+.+    +++.++.+++.+++++.|+++
T Consensus       213 l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~  281 (360)
T PRK05355        213 LGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSS  281 (360)
T ss_pred             HhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC
Confidence            7766541           111222 3455677777788888754    466778888888888888753

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=97.04  E-value=0.0064  Score=52.19  Aligned_cols=103  Identities=10%  Similarity=0.162  Sum_probs=68.3

Q ss_pred             HHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC-CCCceEEEEecHHHHHHhhccc---------
Q psy13322         83 ELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAA---------  150 (195)
Q Consensus        83 ~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~---------  150 (195)
                      ++++.+++++++|=+++ +|-  . ..-.+.+    |++++|  |.+| .|  +|.+..+++..+.+....         
T Consensus       149 ~l~~~~~~l~iVDavss-~g~--~-~id~~~~----d~~~~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~~~  218 (349)
T TIGR01364       149 ELPDVKNAPLVADMSSN-ILS--R-PIDVSKF----GLIYAGAQKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYKIH  218 (349)
T ss_pred             eecccCCCeEEEEcccc-ccC--c-cCCHHHc----cEEEEecccccCCCc--eEEEEECHHHHhhcccCCCCcchHHHH
Confidence            67777899999999887 432  1 1112222    466776  9997 45  789999998876553321         


Q ss_pred             --cccCC-CchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhcC
Q psy13322        151 --HFNTF-GGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       151 --~~~t~-~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~l  195 (195)
                        ...++ +.|...+.+..++|+.+.+    +++.++.+++.+++++.|+++
T Consensus       219 ~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~  270 (349)
T TIGR01364       219 AENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNS  270 (349)
T ss_pred             HhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence              11223 3455667777788888743    456677888888888888764

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=96.95  E-value=0.0085  Score=51.36  Aligned_cols=122  Identities=14%  Similarity=0.152  Sum_probs=75.5

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh--ccccC-CCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM--AKGIA-NGF  131 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~--sK~l~-~G~  131 (195)
                      ++..|.+--.-...|.+..         ++++.||+++++|=+++ +|..   ..-.+.++    +...  -|.+| .| 
T Consensus       138 ~~~lV~~~h~~t~tG~~~~---------~i~~~~g~~~~VDa~qs-~g~~---~idv~~~~----~~~ss~~K~lGP~G-  199 (355)
T cd00611         138 DAAYVHYCSNETIHGVEFD---------EVPDTGGVPLVADMSSN-ILSR---PIDVSKFG----VIYAGAQKNLGPAG-  199 (355)
T ss_pred             CCCEEEEeCCcccccEEcc---------eecccCCCeEEEEcccc-ccCC---CCCHHHhC----EEEeecccccCCCc-
Confidence            4445555555455666533         45566999999999988 5321   11222233    3333  28876 45 


Q ss_pred             ceEEEEecHHHHHHhhccc-----------cccCC-CchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhcC
Q psy13322        132 PMGAVVTTTEIAQVLTKAA-----------HFNTF-GGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       132 ~~g~v~~~~~i~~~l~~~~-----------~~~t~-~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~l  195 (195)
                       +|.+.+++++.+.+....           ...++ ..|..+..+..++|+.+.+    +++.++.+++.+++++.|+++
T Consensus       200 -~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~  278 (355)
T cd00611         200 -VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNS  278 (355)
T ss_pred             -eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence             788999998776654321           01113 3355577777788888743    456677888888888888754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=96.92  E-value=0.01  Score=55.45  Aligned_cols=145  Identities=11%  Similarity=0.006  Sum_probs=76.3

Q ss_pred             HHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEE-EEeccccCccccCCCcccccc--cCC
Q psy13322         41 EQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLF-ISDEVQTGFGRTGDNYWGFEM--HGV  116 (195)
Q Consensus        41 ~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~ll-I~DEv~~g~gr~G~~~~~~~~--~~~  116 (195)
                      +.+++.|+++.... ..++||+-|-+  +|....    ++.|.++|   |+.+ ++||+|.+.-.....+.....  .+-
T Consensus       283 e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~  353 (713)
T PRK15399        283 DSIEEKVAATTQAQWPVHAVITNSTY--DGLLYN----TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGER  353 (713)
T ss_pred             HHHHHHHHhCCCcCCceEEEEECCCC--CceeeC----HHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCC
Confidence            78888888763211 14677777744  676665    77788888   6766 599999874222221111111  111


Q ss_pred             Ccchh---hhc--cccCCCCceEEEEecHHHH-HHhhccc-cccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHHH
Q psy13322        117 SPDIV---TMA--KGIANGFPMGAVVTTTEIA-QVLTKAA-HFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQVSA  186 (195)
Q Consensus       117 ~pdi~---~~s--K~l~~G~~~g~v~~~~~i~-~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~  186 (195)
                      .+|.+   |-|  |.+++=-..|++-.+..+- +.+.... ...|++.+-+-+++.-.+-..++.   ..+.+...+.+.
T Consensus       354 ~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~  433 (713)
T PRK15399        354 VPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVERAL  433 (713)
T ss_pred             CCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            45766   446  8887311344444433221 2222222 223333333333333344444432   456677777777


Q ss_pred             HHHHHhhc
Q psy13322        187 QIIGYLRV  194 (195)
Q Consensus       187 ~l~~~L~~  194 (195)
                      .+++.|++
T Consensus       434 ~fR~~l~~  441 (713)
T PRK15399        434 HFRKEVQR  441 (713)
T ss_pred             HHHHHHHh
Confidence            77777754

>KOG0258|consensus

Probab=96.54  E-value=0.0061  Score=52.66  Aligned_cols=153  Identities=14%  Similarity=0.149  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc-cCCCcccccc----
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR-TGDNYWGFEM----  113 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr-~G~~~~~~~~----  113 (195)
                      .++|++.++++... +..+.|||.|-. .+|. +.+.+-+++|..+|.+++++|+.||||..-.+ .|..|+++..    
T Consensus       200 ~~el~~~~~eA~k~i~~r~lvvINPGN-PTGq-vls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~e  277 (475)
T KOG0258|consen  200 VAELERSVDEARKGINPRALVVINPGN-PTGQ-VLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHE  277 (475)
T ss_pred             HHHHHHHHHHHhccCCceEEEEECCCC-ccch-hhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHH
Confidence            56777777766532 356788899853 4564 56788899999999999999999999976334 4444767631    


Q ss_pred             cC-CCcc---h---hhhccccC--CCCceEEEEe---cHHHHHHhhccccccCCCchHHHHHHHHH----------HHHh
Q psy13322        114 HG-VSPD---I---VTMAKGIA--NGFPMGAVVT---TTEIAQVLTKAAHFNTFGGNPVGCVIAST----------VLDV  171 (195)
Q Consensus       114 ~~-~~pd---i---~~~sK~l~--~G~~~g~v~~---~~~i~~~l~~~~~~~t~~~~p~~~~aa~a----------al~~  171 (195)
                      .| ..||   +   ...||++-  .|.+.|++=.   ..++.+.+.+.. +...+.+-.+++..-.          .++.
T Consensus       278 mg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~-si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~  356 (475)
T KOG0258|consen  278 MGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLA-SIKLCPQVSGQKLVDLVVNPPKPGDPSYDL  356 (475)
T ss_pred             hcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHH-hhhhcCCccchhhhceecCCCCCCCcchhh
Confidence            23 3443   2   24478886  5778887543   234444443321 0111111122222111          1121


Q ss_pred             h--cchhHHHHHHHHHHHHHHHhhcC
Q psy13322        172 I--KDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       172 ~--~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      .  +.+...+.++.+...+.+.++++
T Consensus       357 ~~~Ekd~il~~l~~ra~l~~~~~ns~  382 (475)
T KOG0258|consen  357 FSSEKDGILSSLRSRAKLTEDAFNSL  382 (475)
T ss_pred             hhhhhHhHHHHHHHHhHHHHHHHhhc
Confidence            1  23566777888888887777653

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=96.28  E-value=0.011  Score=55.34  Aligned_cols=142  Identities=12%  Similarity=0.065  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCc---ccccccC
Q psy13322         40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY---WGFEMHG  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~---~~~~~~~  115 (195)
                      .+.+++.|+++.... ..++||+-|-+  +|....    ++.|.++|..++  |++||+|.+.-.....+   .+.. .+
T Consensus       282 ~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~-~g  352 (714)
T PRK15400        282 HATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMS-GG  352 (714)
T ss_pred             HHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhh-cC
Confidence            377888887763211 23578887754  676665    888999998887  68999998742222211   1111 22


Q ss_pred             CCc-c--hhhhc--cccCCCCc-eEEEEe----c-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc---hhHHHHH
Q psy13322        116 VSP-D--IVTMA--KGIANGFP-MGAVVT----T-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD---EELQYNC  181 (195)
Q Consensus       116 ~~p-d--i~~~s--K~l~~G~~-~g~v~~----~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l  181 (195)
                      -.+ |  ++|-|  |.+++ +. .|++-.    . +.+.+.+.   ...|++.+-+-+|+.-.+-..++.   ..+.+..
T Consensus       353 a~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~vd~~~~n~a~~---m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~  428 (714)
T PRK15400        353 RVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYM---MHTTTSPHYGIVASTETAAAMMKGNAGKRLINGS  428 (714)
T ss_pred             CCCCCceEEEEchhhcccc-hhHHhHHHHcCCCCHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            221 3  45556  88863 21 122111    1 22323222   223334333333333344444432   4566777


Q ss_pred             HHHHHHHHHHhhc
Q psy13322        182 KQVSAQIIGYLRV  194 (195)
Q Consensus       182 ~~~~~~l~~~L~~  194 (195)
                      .+.+..+++.|++
T Consensus       429 i~~a~~~R~~l~~  441 (714)
T PRK15400        429 IERAIKFRKEIKR  441 (714)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777777754

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=96.01  E-value=0.14  Score=44.18  Aligned_cols=58  Identities=12%  Similarity=0.122  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ   98 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~   98 (195)
                      +++.|+++|++.++ +++..|+.-- ..+++| -+.+-.-+++++++|++|++.+++|-..
T Consensus       170 D~~kLe~lidevG~-~nvp~I~~tiT~NsagG-QpVSm~n~r~v~~ia~ky~ipvv~Da~R  228 (471)
T COG3033         170 DLEKLERLIDEVGA-DNVPYIVLTITNNSAGG-QPVSMANMKAVYEIAKKYDIPVVMDAAR  228 (471)
T ss_pred             CHHHHHHHHHHhCc-ccCcEEEEEEeccccCC-CcchHHhHHHHHHHHHHcCCcEEeehhh
Confidence            48999999998876 4676554443 334455 5667788999999999999999999764

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=95.33  E-value=0.35  Score=42.13  Aligned_cols=145  Identities=9%  Similarity=0.043  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH-HHHcCCEEEEeccccCccccCCC--cc--cc---
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYEL-IKSNNGLFISDEVQTGFGRTGDN--YW--GF---  111 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l-~~~~~~llI~DEv~~g~gr~G~~--~~--~~---  111 (195)
                      ++.+++++.+.   ..|++|+.=|.+|+-.-+.++.+..++|+.+ +.+.+..|+.|.+|+=--.++..  ..  .+   
T Consensus       160 mD~Ve~LV~~D---~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~  236 (425)
T PF12897_consen  160 MDMVEELVAED---PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDA  236 (425)
T ss_dssp             HHHHHHHTHTS---TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHH
T ss_pred             HHHHHHHHhcC---CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHH
Confidence            78888888643   4899999999999743367889999999999 44789999999998721111210  00  00   


Q ss_pred             -cccCCCcch----hhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q psy13322        112 -EMHGVSPDI----VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSA  186 (195)
Q Consensus       112 -~~~~~~pdi----~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~  186 (195)
                       +..| .||.    .++||---.|-.++++.++++-++.+.......|.+.+-+.|..-..-++-.+ .++.++.++.++
T Consensus       237 ~~~AG-npdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~-gGv~aHM~kHa~  314 (425)
T PF12897_consen  237 CAKAG-NPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAE-GGVRAHMRKHAA  314 (425)
T ss_dssp             HHHTT--TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHSHH-THHHHHHHHHHH
T ss_pred             HHHcC-CCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCceeCccHHHHHHHHHHhcChh-hHHHHHHHHHHH
Confidence             1112 3442    24477554444589999999877877766666677777777776555444321 145555555554


Q ss_pred             HHH
Q psy13322        187 QII  189 (195)
Q Consensus       187 ~l~  189 (195)
                      .|+
T Consensus       315 il~  317 (425)
T PF12897_consen  315 ILR  317 (425)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=95.14  E-value=0.098  Score=45.48  Aligned_cols=121  Identities=15%  Similarity=0.108  Sum_probs=71.7

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-cCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC--C
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKS-NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA--N  129 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~-~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~--~  129 (195)
                      .+..+-.|+.   +|...+    ++   +++++ +++++|+|=|=+ +|  |. .+-..    ..|+++.|  |+|+  +
T Consensus       130 ~v~~vhnETS---TGv~np----v~---~i~~~~~~~lliVDavSs-~g--~~-~l~~d----~iDv~~tgsQK~L~~pp  191 (374)
T TIGR01365       130 DVVFTWNGTT---SGVRVP----NG---DFIPADREGLTICDATSA-AF--AQ-DLDYH----KLDVVTFSWQKVLGGEG  191 (374)
T ss_pred             CEEEecCCCc---hheecc----cc---ccccccCCCcEEEEccch-hc--CC-CCChh----HCcEEEEechhccCCCC
Confidence            4544455543   455555    33   33433 589999997644 53  32 11122    26777775  9998  4


Q ss_pred             CCceEEEEecHHHHHHhhcc----------------------ccccCC-CchHHHHHHHHHHHHhhcc----hhHHHHHH
Q psy13322        130 GFPMGAVVTTTEIAQVLTKA----------------------AHFNTF-GGNPVGCVIASTVLDVIKD----EELQYNCK  182 (195)
Q Consensus       130 G~~~g~v~~~~~i~~~l~~~----------------------~~~~t~-~~~p~~~~aa~aal~~~~~----~~~~~~l~  182 (195)
                      |  +|.++.+++..+.....                      ....|. ..+..++.+++.+|+.+.+    ++..++.+
T Consensus       192 G--ls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~  269 (374)
T TIGR01365       192 A--HGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARAD  269 (374)
T ss_pred             c--eEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            6  68888888766543310                      001233 3344566667777775533    45677788


Q ss_pred             HHHHHHHHHhhcC
Q psy13322        183 QVSAQIIGYLRVV  195 (195)
Q Consensus       183 ~~~~~l~~~L~~l  195 (195)
                      ++.+.+++.++++
T Consensus       270 ~~a~~l~~~l~~l  282 (374)
T TIGR01365       270 DNLAVLEAFVAKN  282 (374)
T ss_pred             HHHHHHHHHHHHC
Confidence            8888888888753

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=94.79  E-value=0.58  Score=40.00  Aligned_cols=131  Identities=17%  Similarity=0.169  Sum_probs=78.7

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCC--C
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG--F  131 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G--~  131 (195)
                      +++|.|++..|+--+|....    +.+|-.++++||++++.|=+|+ -|-.--   -....|..--|-+-=|-+++|  -
T Consensus       165 dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs-aGavp~---~Lh~~gaDfaigcsyKYLNgGPGa  236 (407)
T COG3844         165 DDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHS-AGAVPV---DLHAAGADFAIGCSYKYLNGGPGA  236 (407)
T ss_pred             cceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcc-cCCcce---eecccCCCeeeeeeceeccCCCCC
Confidence            68999999999999998888    9999999999999999999998 222110   111123332233444888754  3


Q ss_pred             ceEEEEecHHHHHHh--------------------hccccccCC--C-chHHHHHHHHHHHHhhcc---hhHHHHHHHHH
Q psy13322        132 PMGAVVTTTEIAQVL--------------------TKAAHFNTF--G-GNPVGCVIASTVLDVIKD---EELQYNCKQVS  185 (195)
Q Consensus       132 ~~g~v~~~~~i~~~l--------------------~~~~~~~t~--~-~~p~~~~aa~aal~~~~~---~~~~~~l~~~~  185 (195)
                      |.+..+.++ ..+..                    .......-|  + .+-.++++...+|++..+   .+++++--...
T Consensus       237 pa~l~v~~~-h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLT  315 (407)
T COG3844         237 PAGLFVAPR-HRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALT  315 (407)
T ss_pred             ceeEEeccc-cccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHH
Confidence            333333332 22211                    111111111  1 234577777788888755   45555555566


Q ss_pred             HHHHHHhh
Q psy13322        186 AQIIGYLR  193 (195)
Q Consensus       186 ~~l~~~L~  193 (195)
                      ++|.+.++
T Consensus       316 d~fieLvE  323 (407)
T COG3844         316 DYFIELVE  323 (407)
T ss_pred             HHHHHHHH
Confidence            66666554

>PLN02452 phosphoserine transaminase

Probab=94.79  E-value=0.27  Score=42.55  Aligned_cols=97  Identities=9%  Similarity=0.096  Sum_probs=64.2

Q ss_pred             CEEEEeccccCccccCCCcccccccCCCcchhhhccccC-CCCceEEEEecHHHHHHhhccc-----------cccCC-C
Q psy13322         90 GLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAA-----------HFNTF-G  156 (195)
Q Consensus        90 ~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~-----------~~~t~-~  156 (195)
                      +++|+|=+.+ +|  +. ..-.+.+++  |+..--|.+| .|  ++.+++++++.+......           ..+++ .
T Consensus       171 ~~lvVDa~Ss-~g--~~-pidv~~~~v--~~~saqK~lGP~G--l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~T  242 (365)
T PLN02452        171 VPLVADMSSN-FL--SK-PVDVSKYGV--IYAGAQKNVGPSG--VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNT  242 (365)
T ss_pred             CeEEEECCcc-cc--Cc-ccCHHHcCE--EEEecccccCCCC--eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCC
Confidence            8999998877 43  22 222344444  4433339997 56  788999998876653321           12233 4


Q ss_pred             chHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhc
Q psy13322        157 GNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       157 ~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .|..++.+..++|+.+.+    +.+.++.+++.++|++.|++
T Consensus       243 P~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~  284 (365)
T PLN02452        243 PPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDE  284 (365)
T ss_pred             hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence            466788888899998854    35678888889999998865

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=94.61  E-value=0.65  Score=40.49  Aligned_cols=55  Identities=4%  Similarity=-0.052  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT   99 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~   99 (195)
                      ++.+++.+++.++ +.+.+|+. ..-+..|-   -++.+++|.++|++||+..|+--+|+
T Consensus       141 ~~~ie~~i~~~G~-~~iLcvlt-ttscfapr---~~D~i~~IakiC~~~~IPhlvNnAYg  195 (389)
T PF05889_consen  141 LEAIEAKIEELGA-DNILCVLT-TTSCFAPR---LPDDIEEIAKICKEYDIPHLVNNAYG  195 (389)
T ss_dssp             HHHHHHHHHHHCG-GGEEEEEE-ESSTTTTB-------HHHHHHHHHHHT--EEEEGTTT
T ss_pred             HHHHHHHHHHhCC-CCeEEEEE-ecCccCCC---CCccHHHHHHHHHHcCCceEEccchh
Confidence            5778888877653 34555554 44333332   23569999999999999999999887

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=94.59  E-value=0.42  Score=41.44  Aligned_cols=101  Identities=15%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             HHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC-CCCceEEEEecHHHHHHhhcc-----------
Q psy13322         84 LIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKA-----------  149 (195)
Q Consensus        84 l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~-----------  149 (195)
                      +.+.+++++|+|=+=+ ++  +. ..-+..+    |++..|  |.|| .|  ++.++.+++..+.....           
T Consensus       163 ~~~~~~~llvvD~sS~-~~--s~-pid~~~~----dvi~agsQKnlgP~G--ltvvivs~~al~~~~~~~p~~ldy~~~~  232 (364)
T PRK12462        163 AAGLPDSPLIADMSSD-FM--SR-PFDVEAY----GMVYAHAQKNLGPAG--VTVAIIRRALLERVPDTLPPMLDFRTHV  232 (364)
T ss_pred             ccccCCCeEEEEcCch-hh--CC-CCChHHc----cEEEeeccccCCCCc--eEEEEECHHHHhhccccCCchhhHHHHH
Confidence            3334799999996633 42  22 2222322    777776  9998 66  67888898877654331           


Q ss_pred             ccccCC-CchHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHhhc
Q psy13322        150 AHFNTF-GGNPVGCVIASTVLDVIKDE-----ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       150 ~~~~t~-~~~p~~~~aa~aal~~~~~~-----~~~~~l~~~~~~l~~~L~~  194 (195)
                      ...+++ ..+.+.+-+...+|+.+.++     .+.++-+++.+.+++.+.+
T Consensus       233 ~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~  283 (364)
T PRK12462        233 EHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDA  283 (364)
T ss_pred             hcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence            022344 44566888888999988554     4556666777777777654

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=94.57  E-value=0.42  Score=44.22  Aligned_cols=152  Identities=13%  Similarity=0.129  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHH---HHcCC--EEEEeccccCcccc---CCC--
Q psy13322         39 FYEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELI---KSNNG--LFISDEVQTGFGRT---GDN--  107 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~---~~~~~--llI~DEv~~g~gr~---G~~--  107 (195)
                      +++.|++.|++....+ .+.+||.-.-..+.|.+=+    |++|.++|   +++|+  +|=+|=++.|+.+.   ...  
T Consensus       261 d~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~  336 (608)
T TIGR03811       261 DINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDN  336 (608)
T ss_pred             CHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhcccccc
Confidence            3678888776532222 4445554444445676666    88888887   77898  58899999986311   100  


Q ss_pred             ccc-------------c------------ccc-CC-Ccchhhhc--cccCCCCceEEEEecH-HHHHHhhccc-c-----
Q psy13322        108 YWG-------------F------------EMH-GV-SPDIVTMA--KGIANGFPMGAVVTTT-EIAQVLTKAA-H-----  151 (195)
Q Consensus       108 ~~~-------------~------------~~~-~~-~pdi~~~s--K~l~~G~~~g~v~~~~-~i~~~l~~~~-~-----  151 (195)
                      +..             +            ..+ ++ ..|-+|+.  |.+..-++.|+++.++ .+.+.+.... +     
T Consensus       337 ~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~  416 (608)
T TIGR03811       337 FIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKG  416 (608)
T ss_pred             ccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhcccc
Confidence            000             0            001 22 34556664  7776667788888876 4545443211 0     


Q ss_pred             --------ccCCCchH--HHHHHHHHHHHhh--cc---hhHHHHHHHHHHHHHHHhhc
Q psy13322        152 --------FNTFGGNP--VGCVIASTVLDVI--KD---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       152 --------~~t~~~~p--~~~~aa~aal~~~--~~---~~~~~~l~~~~~~l~~~L~~  194 (195)
                              .++..++-  ...++...+++.+  ..   .+++++.-++.+++.+.|++
T Consensus       417 ~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~  474 (608)
T TIGR03811       417 ADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNN  474 (608)
T ss_pred             ccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    01222222  3355555666665  33   45667777778888887764

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>KOG2467|consensus

Probab=94.21  E-value=0.83  Score=39.63  Aligned_cols=140  Identities=16%  Similarity=0.148  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ-TGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~-~g~gr~G~~~~~~~~~~~~p  118 (195)
                      .+.|++.-...+|+    .||. .. |.. .+.++   ..+++++|++.|++|++|=+| +|+.-.|.-.-.|++.    
T Consensus       178 YD~Le~~A~~frPk----~iia-G~-SaY-~R~~D---YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~----  243 (477)
T KOG2467|consen  178 YDKLEKTATLFRPK----LIIA-GT-SAY-SRLID---YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYC----  243 (477)
T ss_pred             hHHHHHHHHhcCCc----EEEe-cc-ccc-hhhcc---HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccccc----
Confidence            57888876666554    3332 21 111 13332   789999999999999999999 5664444312233433    


Q ss_pred             chhhh--ccccCCCCceEEEEecHHH---------------HHHhhccccccCCCc-hHHHHHHHHHHHHhhcch---hH
Q psy13322        119 DIVTM--AKGIANGFPMGAVVTTTEI---------------AQVLTKAAHFNTFGG-NPVGCVIASTVLDVIKDE---EL  177 (195)
Q Consensus       119 di~~~--sK~l~~G~~~g~v~~~~~i---------------~~~l~~~~~~~t~~~-~p~~~~aa~aal~~~~~~---~~  177 (195)
                      ||+|.  =|+|-| =+.|.+..++-+               -+.+....+..-.++ +--.+++...||+....+   ..
T Consensus       244 DiVTTTTHKsLRG-PRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Y  322 (477)
T KOG2467|consen  244 DIVTTTTHKSLRG-PRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEY  322 (477)
T ss_pred             ceeeccccccccC-CcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHH
Confidence            66644  488863 234555544421               122222222222222 233445555666665443   34


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      ..++.+|.+.|.+.|.+
T Consensus       323 q~qV~~Nakala~~l~~  339 (477)
T KOG2467|consen  323 QKQVLKNAKALASALIS  339 (477)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45677777777777653

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=94.17  E-value=0.64  Score=40.29  Aligned_cols=98  Identities=14%  Similarity=0.225  Sum_probs=61.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--CCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--NGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      ++.+++.|+     .+++.|.+-=-.|-+--...+.+.++++.++.++.  ++++++|-.|..|.-+      .+-..+-
T Consensus       144 ~~~i~~~~~-----~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~------~EP~~vG  212 (403)
T PF06838_consen  144 WEAIKKALK-----PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVET------QEPTEVG  212 (403)
T ss_dssp             HHHHHHHHH-----TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSS------S-GGGGT
T ss_pred             HHHHHHhhc-----cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccc------cCccccc
Confidence            678888888     25556665544343333456678888888888874  7899999988766221      1222345


Q ss_pred             cchhh--hccccCCCC--ceEEEEecHHHHHHhhc
Q psy13322        118 PDIVT--MAKGIANGF--PMGAVVTTTEIAQVLTK  148 (195)
Q Consensus       118 pdi~~--~sK~l~~G~--~~g~v~~~~~i~~~l~~  148 (195)
                      .|++.  +=|-.|||+  ..||+++++++.+....
T Consensus       213 ADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~  247 (403)
T PF06838_consen  213 ADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAY  247 (403)
T ss_dssp             -SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHH
T ss_pred             hhheeccceeCCCCCccCcCCEEechHHHHHHHHh
Confidence            57764  449999887  37899999999887654

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>KOG1412|consensus

Probab=94.04  E-value=0.99  Score=38.39  Aligned_cols=149  Identities=18%  Similarity=0.288  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC---Cccccccc-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD---NYWGFEMH-  114 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~---~~~~~~~~-  114 (195)
                      ++.+-..|+...   .-..+|.-. -.+.+|+ -|+++-...|+++.++.+.+..+|=+|.|| -.|.   -.|+...+ 
T Consensus       165 ~e~~Lsdl~~AP---e~si~iLhaCAhNPTGm-DPT~EQW~qia~vik~k~lf~fFDiAYQGf-ASGD~~~DawAiR~fV  239 (410)
T KOG1412|consen  165 LEGFLSDLESAP---EGSIIILHACAHNPTGM-DPTREQWKQIADVIKSKNLFPFFDIAYQGF-ASGDLDADAWAIRYFV  239 (410)
T ss_pred             HHHHHHHHhhCC---CCcEEeeeccccCCCCC-CCCHHHHHHHHHHHHhcCceeeeehhhccc-ccCCccccHHHHHHHH
Confidence            455555565442   222344444 4677885 567788899999999999999999999998 3453   12333222 


Q ss_pred             --CCCcchh--hhccccC-CCCceE---EEEecHHHHHHhhcc-c--cccCCCc-hHHHHHHHHHHHHhhc--c------
Q psy13322        115 --GVSPDIV--TMAKGIA-NGFPMG---AVVTTTEIAQVLTKA-A--HFNTFGG-NPVGCVIASTVLDVIK--D------  174 (195)
Q Consensus       115 --~~~pdi~--~~sK~l~-~G~~~g---~v~~~~~i~~~l~~~-~--~~~t~~~-~p~~~~aa~aal~~~~--~------  174 (195)
                        |. +=++  .|+|-+| -+=++|   .++-....+..+... .  .-.+++. +..+...+...|+.-+  +      
T Consensus       240 ~~g~-e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~si  318 (410)
T KOG1412|consen  240 EQGF-ELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSI  318 (410)
T ss_pred             hcCC-eEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHH
Confidence              21 1122  6789888 444544   344344555444332 1  2334443 3345555555664321  1      


Q ss_pred             hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ..+-.++.+++..|++.|..
T Consensus       319 k~MssRI~~MR~aLrd~L~a  338 (410)
T KOG1412|consen  319 KTMSSRIKKMRTALRDHLVA  338 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            12345666777777777654

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=94.00  E-value=0.45  Score=43.32  Aligned_cols=91  Identities=20%  Similarity=0.153  Sum_probs=59.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-ccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~gr~G~~~~~~~~~~~~p  118 (195)
                      .+.+++.+.++.. .+..+||+.|-+  +|....    +++|.+++.++++++..||+|.- ++..+. . .-....-..
T Consensus       153 ~~~~~~~l~~~~~-~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah~~~~~~~~~-l-~~~~~~~~~  223 (557)
T COG1982         153 LETFKEALLAHPD-AEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAHPAHFDFSPM-L-PESALNGGA  223 (557)
T ss_pred             HHHHHHHHHhChh-hheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcCccccccccc-C-cchhhhcCc
Confidence            5788888877642 126788888865  677666    99999999999999999999962 233322 1 111112344


Q ss_pred             chhhhc--cccCCCCceEEEEec
Q psy13322        119 DIVTMA--KGIANGFPMGAVVTT  139 (195)
Q Consensus       119 di~~~s--K~l~~G~~~g~v~~~  139 (195)
                      |++|-|  |.+++.-..|.+-.+
T Consensus       224 ~~~tqS~HK~l~alSQaS~iHv~  246 (557)
T COG1982         224 DFVTQSTHKLLAALSQASMIHVK  246 (557)
T ss_pred             eEEEechhhhhhhhhhhHHHhhC
Confidence            667777  777643344444444

>KOG0629|consensus

Probab=93.92  E-value=0.14  Score=45.02  Aligned_cols=95  Identities=15%  Similarity=0.156  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCC--CCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-ccccCCCcccccccCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGV--SGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~--~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~gr~G~~~~~~~~~~~  116 (195)
                      .++||+.|.....++-+- +++..--|.  -|..-+    |..++++|++|++|+=+|-+..| +-..-+ +. ....|+
T Consensus       237 ~~dLe~kile~k~kg~~P-f~vnaTaGTTV~GAFDd----L~~iadiC~k~~lWmHvDAAwGGglLmS~k-~R-~kl~Gi  309 (510)
T KOG0629|consen  237 PDDLEKKILEAKAKGGVP-FFVNATAGTTVLGAFDD----LNGIADICEKHKLWMHVDAAWGGGLLMSRK-HR-HKLTGI  309 (510)
T ss_pred             hHHHHHHHHHHHhcCCCC-eEEEecCCceeeeccCc----HHHHHHHHHhcCEEEEeecccccccccChh-hH-hhccCc
Confidence            578888877654332232 233332232  355545    99999999999999999988765 211111 10 112255


Q ss_pred             -Ccchhhhc--cccCCCCceEEEEecHH
Q psy13322        117 -SPDIVTMA--KGIANGFPMGAVVTTTE  141 (195)
Q Consensus       117 -~pdi~~~s--K~l~~G~~~g~v~~~~~  141 (195)
                       +.+-++.+  |-+|..++.|+.+.+.+
T Consensus       310 era~SvtwnpHK~~gaplqCsa~l~r~~  337 (510)
T KOG0629|consen  310 ERANSVTWNPHKLMGAPLQCSAFLTREE  337 (510)
T ss_pred             cccCceeecHHHhhcCcchhhHHHHHHH
Confidence             34566664  88888888898888875

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=93.01  E-value=1.6  Score=38.59  Aligned_cols=144  Identities=19%  Similarity=0.166  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc----cCccccCCCcccccc
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ----TGFGRTGDNYWGFEM  113 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~----~g~gr~G~~~~~~~~  113 (195)
                      -++++|++.++     +++||+++--. |.-|..-   +-+++|+++..++|..|..|-+-    -|+-|.|..++-..|
T Consensus       192 VDlddLk~k~~-----~~~AalMiTnP-sT~GvFE---~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~H  262 (496)
T COG1003         192 VDLDDLRAKAE-----DNLAALMITNP-STLGVFE---EDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVH  262 (496)
T ss_pred             ccHHHHHHHhc-----cceeEEEeccC-cccccch---hhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEE
Confidence            34788888777     47777776543 3345332   33889999999999999999753    344455531111123


Q ss_pred             cCCCcchhhhccccCCCCc-eEEEEecHHHHHHhhc----cc---------------cccCCCchHHHHHHHHHHHHhhc
Q psy13322        114 HGVSPDIVTMAKGIANGFP-MGAVVTTTEIAQVLTK----AA---------------HFNTFGGNPVGCVIASTVLDVIK  173 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G~~-~g~v~~~~~i~~~l~~----~~---------------~~~t~~~~p~~~~aa~aal~~~~  173 (195)
                      +++.   -||+-..|||=| .|-|.+.+.+...+-.    ..               ....+.+|......+.+-+..+-
T Consensus       263 lNLH---KTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG  339 (496)
T COG1003         263 LNLH---KTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMG  339 (496)
T ss_pred             eecc---cccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHh
Confidence            3321   144444454444 4556666667665543    10               12233445555556666666665


Q ss_pred             chhHH---HHHHHHHHHHHHHhh
Q psy13322        174 DEELQ---YNCKQVSAQIIGYLR  193 (195)
Q Consensus       174 ~~~~~---~~l~~~~~~l~~~L~  193 (195)
                      .+++.   +..--|..|+..+|+
T Consensus       340 ~~GL~~ase~AvLNANYia~rL~  362 (496)
T COG1003         340 ADGLKQASEVAVLNANYIARRLK  362 (496)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhh
Confidence            44443   344456778887776

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=92.52  E-value=2.3  Score=41.65  Aligned_cols=81  Identities=12%  Similarity=0.043  Sum_probs=49.3

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh-ccccC-----
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM-AKGIA-----  128 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~-sK~l~-----  128 (195)
                      .+++++ -.+++..|.+.+    +++|.++|+++|+++++ =++. ++-.+-.  ...  .+-.||++. +..|+     
T Consensus       234 ~v~~vl-vq~P~~~G~v~d----v~~I~~~ah~~GaL~iV-aad~-lal~~l~--~pg--e~GADi~vgsgqKwg~P~G~  302 (993)
T PLN02414        234 DVCGVL-VQYPATDGEVLD----YAEFVKNAHANGVKVVM-ATDL-LALTMLK--PPG--EWGADIVVGSAQRFGVPMGY  302 (993)
T ss_pred             ceEEEE-EecCCCCeEEcC----HHHHHHHHHHcCCEEEE-EECH-HHhcCCC--CHh--hccCcEEEECCCccccCCCC
Confidence            465555 334556788876    99999999999999998 3332 3222210  111  234466654 23333     


Q ss_pred             CCCceEEEEecHHHHHHh
Q psy13322        129 NGFPMGAVVTTTEIAQVL  146 (195)
Q Consensus       129 ~G~~~g~v~~~~~i~~~l  146 (195)
                      ||=..|++.+++++.+.+
T Consensus       303 GGP~aGflavr~~~~r~~  320 (993)
T PLN02414        303 GGPHAAFLATSQEYKRLM  320 (993)
T ss_pred             CCCCeeEEEECHHHHhhC
Confidence            342378888888876654

>PRK05367 glycine dehydrogenase; Provisional

Probab=91.30  E-value=3.5  Score=40.31  Aligned_cols=82  Identities=9%  Similarity=0.003  Sum_probs=51.0

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--c---ccC-
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--K---GIA-  128 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K---~l~-  128 (195)
                      +++++ +-.+++..|.+.+    +++|.++|+++|+++++|=.+..++. .+   ...  .+-.||++.+  |   .+| 
T Consensus       206 ~~~~v-lvq~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~-l~---~pg--e~GaDi~vgs~qkfg~P~g~  274 (954)
T PRK05367        206 DVFGV-LLQYPGTSGEVRD----YTALIAAAHARGALVAVAADLLALTL-LT---PPG--EMGADIAVGSAQRFGVPMGF  274 (954)
T ss_pred             cEEEE-EEecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccC-CC---Chh--hcCCCEEEeeCcccCCCCCC
Confidence            56555 4445677898876    99999999999999999875532221 11   011  1234665443  2   223 


Q ss_pred             CCCceEEEEecHHHHHHhh
Q psy13322        129 NGFPMGAVVTTTEIAQVLT  147 (195)
Q Consensus       129 ~G~~~g~v~~~~~i~~~l~  147 (195)
                      ||=-.|++.+++++.+.+.
T Consensus       275 GGP~aGflavr~~~~r~lp  293 (954)
T PRK05367        275 GGPHAAYFAVRDAYKRSMP  293 (954)
T ss_pred             CCCCEEEEEECHHHHhhCC
Confidence            2322678888888777664

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=91.12  E-value=4.2  Score=35.94  Aligned_cols=137  Identities=18%  Similarity=0.221  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEE--eccccCc-cccCCCcccccccCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFIS--DEVQTGF-GRTGDNYWGFEMHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~--DEv~~g~-gr~G~~~~~~~~~~~  116 (195)
                      +++|++. .   + +++++|+++-... .|....   .+++|.+.++++|+++|+  |=+--++ -..|.         +
T Consensus       200 ~~~l~~~-~---~-~~~~gv~vQyP~~-~G~~~~---d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe---------~  261 (450)
T COG0403         200 LDDLESA-D---D-GDVFGVLVQYPNT-FGIVEE---DLRALIEAAHSAGALVIVAADPLALGLLKPPGE---------F  261 (450)
T ss_pred             hhhhhhc-c---c-cCeEEEEEecCCC-CCccch---hHHHHHHHHhhcCCEEEEEechhHhhccCCccc---------c
Confidence            4555554 2   1 4889999998754 453333   299999999999998873  3221121 11121         1


Q ss_pred             Ccchh-----hhccccC-CCCceEEEEecHHHHHHhhcc----------------------------ccccCCCchHHHH
Q psy13322        117 SPDIV-----TMAKGIA-NGFPMGAVVTTTEIAQVLTKA----------------------------AHFNTFGGNPVGC  162 (195)
Q Consensus       117 ~pdi~-----~~sK~l~-~G~~~g~v~~~~~i~~~l~~~----------------------------~~~~t~~~~p~~~  162 (195)
                      -.||+     -||=.+| ||--.|++.++++....+...                            .-.+..+.|..-+
T Consensus       262 GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLl  341 (450)
T COG0403         262 GADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALL  341 (450)
T ss_pred             CCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHH
Confidence            12333     4555666 665577888888776655221                            0122333443322


Q ss_pred             HHHHHHHHhh-cc---hhHHHHHHHHHHHHHHHhhc
Q psy13322        163 VIASTVLDVI-KD---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       163 ~aa~aal~~~-~~---~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.+.+.+-.. -.   .++.++..+...+|.++|++
T Consensus       342 A~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~  377 (450)
T COG0403         342 ALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKE  377 (450)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2222222222 22   45667788888899988874

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=90.75  E-value=5.8  Score=35.22  Aligned_cols=130  Identities=15%  Similarity=0.128  Sum_probs=65.8

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh-ccccC----
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM-AKGIA----  128 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~-sK~l~----  128 (195)
                      +++++|++.-... -|.+-.    +++|.++++++|+++|+  . +..--.+. .-.-..+  -.||++- +|.||    
T Consensus       196 ~~~a~v~vq~Pn~-~G~~ed----~~~i~~~~h~~gal~~~--~-ad~~aL~~-l~~Pge~--GADI~vg~~Q~fg~p~~  264 (429)
T PF02347_consen  196 DDTAAVMVQNPNT-FGVFED----IKEIADIAHAAGALVIV--G-ADPNALGG-LKSPGEY--GADIVVGEHQTFGIPMG  264 (429)
T ss_dssp             TTEEEEEEESS-T-TSB--T----HHHHHHHHHHTT-EEEE--C-GGCCGCCT-C--GGGG--T-SEEEECCTTTT---C
T ss_pred             cCeEEEEeecCCC-CceEee----HHHHHHHHHHcCCEEEE--e-cCHHHHhC-cCChhhc--CccEEeeCCCCCcccCC
Confidence            4799999887643 454443    99999999999999986  1 22111110 0011112  2366522 36665    


Q ss_pred             CCCc-eEEEEecHHHHHHhhcc----------------------------ccccCCCchHHHHHH-HHHHHHhhcc---h
Q psy13322        129 NGFP-MGAVVTTTEIAQVLTKA----------------------------AHFNTFGGNPVGCVI-ASTVLDVIKD---E  175 (195)
Q Consensus       129 ~G~~-~g~v~~~~~i~~~l~~~----------------------------~~~~t~~~~p~~~~a-a~aal~~~~~---~  175 (195)
                      .|=| .|++.++++++..+...                            .-.+.++.|..-++. +..-+..+-.   .
T Consensus       265 ~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~  344 (429)
T PF02347_consen  265 FGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLR  344 (429)
T ss_dssp             CC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHH
Confidence            2334 56777777776655211                            011233444443332 2222233333   4


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++-++...+..++.++|++
T Consensus       345 ~iA~~~~~~A~yl~~~L~~  363 (429)
T PF02347_consen  345 EIAERIHLNAHYLAERLKK  363 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5667788999999999876

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>smart00642 Aamy Alpha-amylase domain

Probab=88.78  E-value=2.5  Score=32.41  Aligned_cols=47  Identities=13%  Similarity=-0.031  Sum_probs=34.6

Q ss_pred             CeEEEEEcccCCCCC-------c----------ccCCHHHHHHHHHHHHHcCCEEEEeccccCc
Q psy13322         55 GAAALIAESIQGVSG-------V----------KEFPRYFLRRAYELIKSNNGLFISDEVQTGF  101 (195)
Q Consensus        55 ~~aavivEpv~s~~G-------~----------~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~  101 (195)
                      .+-+|.+-|++....       .          ..-+.+.|+++++-|+++|+-+|+|=|....
T Consensus        32 G~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~   95 (166)
T smart00642       32 GVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHT   95 (166)
T ss_pred             CCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            566898888754331       1          1234588999999999999999999876543

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=87.97  E-value=1.4  Score=33.81  Aligned_cols=54  Identities=17%  Similarity=0.156  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCC----HHHHHHHHHHHHHcCCEEEE
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFP----RYFLRRAYELIKSNNGLFIS   94 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~----~~~L~~l~~l~~~~~~llI~   94 (195)
                      ..++.+++.+.+.   .++..||+|++....+.-.-+    ..+++.+.++|+++|+.+|+
T Consensus       127 ~~~~~l~~~~~~~---~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~  184 (193)
T PF13481_consen  127 EDLEELEAALKEL---YGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVIL  184 (193)
T ss_dssp             HHHHHHHHHHTT-------SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEE
T ss_pred             HHHHHHHHHHhhc---CCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence            4467777777763   246689999988764321111    36899999999999987763

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=86.25  E-value=1.5  Score=37.63  Aligned_cols=83  Identities=24%  Similarity=0.294  Sum_probs=50.9

Q ss_pred             HHHHcCCEEEEeccccCccccCCCcccccccCCCcchh--hhccccC-CCCceEEEEecH-HHHHHhhccccccCCCchH
Q psy13322         84 LIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV--TMAKGIA-NGFPMGAVVTTT-EIAQVLTKAAHFNTFGGNP  159 (195)
Q Consensus        84 l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~--~~sK~l~-~G~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p  159 (195)
                      +.+.-+..+|-|=+|=     -.++..+.. ...-||+  |+||.-| +|.|+||.+..+ ++...+......+|.+.+-
T Consensus       157 V~~g~~~k~I~D~AYY-----WPhyTpI~~-~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~  230 (363)
T PF04864_consen  157 VLNGSSGKVIHDLAYY-----WPHYTPITA-PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSR  230 (363)
T ss_dssp             SSTTTEEEEEEE-TT------STTTS---S--B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--H
T ss_pred             hcCCCCcceeeeeeee-----cccccccCC-CCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcH
Confidence            3445556678885542     222322221 2344665  6799999 899999999987 5778777777778888888


Q ss_pred             HHHHHHHHHHHhh
Q psy13322        160 VGCVIASTVLDVI  172 (195)
Q Consensus       160 ~~~~aa~aal~~~  172 (195)
                      =++.-++..|+.+
T Consensus       231 dsQLRa~kiLk~v  243 (363)
T PF04864_consen  231 DSQLRALKILKVV  243 (363)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888888765

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG0628|consensus

Probab=86.08  E-value=1  Score=40.11  Aligned_cols=58  Identities=12%  Similarity=0.134  Sum_probs=42.3

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF  101 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~  101 (195)
                      +.|+++|++....+-+-.+++-++ |.+|.-..  +.|.+|..+|+++|+||=+|-+|+|-
T Consensus       220 ~~L~~AIe~D~arGlIPf~v~at~-GTT~~ca~--D~l~elg~Vc~~~glWLHVDAAYAGs  277 (511)
T KOG0628|consen  220 DTLRKAIEEDIARGLIPFFVCATL-GTTSSCAF--DELEELGPVCREEGLWLHVDAAYAGS  277 (511)
T ss_pred             HHHHHHHHHHHhCCCccEEEEEee-cCcccccc--ccHHHhcchhhhcCEEEEeehhhccc
Confidence            667777776544345555555555 55554444  67999999999999999999999963

>KOG3846|consensus

Probab=85.11  E-value=7.9  Score=33.11  Aligned_cols=56  Identities=14%  Similarity=0.006  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG  102 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g  102 (195)
                      .+++-+.|++.+  +.+|.|.+..||--+|....    +.+|-..-...|+++-+|=+|+ +|
T Consensus       201 teDILd~IEkng--DeiA~v~fSGvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vg  256 (465)
T KOG3846|consen  201 TEDILDTIEKNG--DEIALVCFSGVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VG  256 (465)
T ss_pred             HHHHHHHHHhcC--CeEEEEEeecceeecccccc----hhhhhhcccCCCcEechhhhhh-hc
Confidence            466777777765  68999999999988898776    7777766666799999999998 54

>KOG1411|consensus

Probab=84.88  E-value=6.3  Score=34.12  Aligned_cols=135  Identities=19%  Similarity=0.249  Sum_probs=74.4

Q ss_pred             EEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCc---cccccc---CCCcc-hhhhccccC-
Q psy13322         58 ALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY---WGFEMH---GVSPD-IVTMAKGIA-  128 (195)
Q Consensus        58 avivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~---~~~~~~---~~~pd-i~~~sK~l~-  128 (195)
                      .|+.-. -...+| +-|+.+-+++|.++-++.+.+-++|=+|.|| -.|...   ++...+   |..-- --.++|-|| 
T Consensus       200 ~ilLhaCaHNPTG-vDPt~eqw~ki~~~~~~k~~~pffDmAYQGf-aSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGL  277 (427)
T KOG1411|consen  200 IILLHACAHNPTG-VDPTKEQWEKISDLIKEKNLLPFFDMAYQGF-ASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGL  277 (427)
T ss_pred             EEEeehhhcCCCC-CCccHHHHHHHHHHhhhccccchhhhhhccc-ccCCchhhHHHHHHHHHcCCceEeehhhhhhcch
Confidence            344444 455567 4677888999999999999999999999998 345311   111111   11110 125678888 


Q ss_pred             CCCceEE---EEecHHHHHHhhccc---cccCCCchHH-HHHHHHHHHHh--h-----cc-hhHHHHHHHHHHHHHHHhh
Q psy13322        129 NGFPMGA---VVTTTEIAQVLTKAA---HFNTFGGNPV-GCVIASTVLDV--I-----KD-EELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       129 ~G~~~g~---v~~~~~i~~~l~~~~---~~~t~~~~p~-~~~aa~aal~~--~-----~~-~~~~~~l~~~~~~l~~~L~  193 (195)
                      =|=++|+   ++-+++....+....   .--.++.+|+ +...+...|+-  +     .+ ..+.+++..+++.|.+.|+
T Consensus       278 YgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~  357 (427)
T KOG1411|consen  278 YGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALE  357 (427)
T ss_pred             hhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhh
Confidence            4445554   333445444443321   1223444444 22222222221  1     11 3456777888888888775


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       358 ~  358 (427)
T KOG1411|consen  358 K  358 (427)
T ss_pred             c
Confidence            4

>KOG2040|consensus

Probab=82.77  E-value=8.9  Score=35.97  Aligned_cols=144  Identities=18%  Similarity=0.178  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecc----ccCccccCCCcccc--c
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEV----QTGFGRTGDNYWGF--E  112 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv----~~g~gr~G~~~~~~--~  112 (195)
                      ++.+|+..-+++.  ++.||++|.-. |..|..-..   ++++.++..+||.-+.+|-+    |.|+.+.|. + +.  .
T Consensus       666 d~~dLk~kaekh~--~~Laa~MvTYP-ST~GvfE~~---i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd-~-GaDV~  737 (1001)
T KOG2040|consen  666 DMVDLKAKAEKHK--DNLAALMVTYP-STHGVFEEG---IDDICDIIHEHGGQVYLDGANMNAQVGLCRPGD-I-GADVC  737 (1001)
T ss_pred             cHHHHHHHHHHhh--hhhheeEEecc-ccccccccc---HHHHHHHHHhcCCEEEecCCCccceecccCCcc-c-cccce
Confidence            4788999888885  58998888653 556665554   88899999999999999974    556666663 2 22  2


Q ss_pred             ccCCCcchhhhccccCCCCc-eEEEEecHHHHHHhhccc-----------cccCCCc----hHHHHHHHHHHHHhhcchh
Q psy13322        113 MHGVSPDIVTMAKGIANGFP-MGAVVTTTEIAQVLTKAA-----------HFNTFGG----NPVGCVIASTVLDVIKDEE  176 (195)
Q Consensus       113 ~~~~~pdi~~~sK~l~~G~~-~g~v~~~~~i~~~l~~~~-----------~~~t~~~----~p~~~~aa~aal~~~~~~~  176 (195)
                      ++++.   -||.=..|||-| +|-+.+.+.++..+....           ...+.+.    +........+-++.+...+
T Consensus       738 HLNLH---KTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~G  814 (1001)
T KOG2040|consen  738 HLNLH---KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGG  814 (1001)
T ss_pred             eeccc---ceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccc
Confidence            22221   023333344433 455555666666553321           1122222    3333444556666654333


Q ss_pred             HH---HHHHHHHHHHHHHhh
Q psy13322        177 LQ---YNCKQVSAQIIGYLR  193 (195)
Q Consensus       177 ~~---~~l~~~~~~l~~~L~  193 (195)
                      +.   +..--|..|+..+|+
T Consensus       815 L~~as~~AiLNaNYMakRLe  834 (1001)
T KOG2040|consen  815 LKDASKIAILNANYMAKRLE  834 (1001)
T ss_pred             cchhhHHHhhhhHHHHHHHh
Confidence            22   223345566666664

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=80.45  E-value=4.4  Score=32.29  Aligned_cols=55  Identities=16%  Similarity=0.025  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCC-CcccCC-----HHHHHHHHHHHHHcCCEEEE
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVS-GVKEFP-----RYFLRRAYELIKSNNGLFIS   94 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~-G~~~~~-----~~~L~~l~~l~~~~~~llI~   94 (195)
                      +++|+..+.+...+.++..||||+++... +.....     ..+++.|.++|+++|+.+|+
T Consensus       108 ~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~  168 (242)
T cd00984         108 VSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIA  168 (242)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence            34454444432211356789999987652 221111     25688899999999997774

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	195
4adb_A	406	Structural And Functional Study Of Succinyl-ornithi		1e-23
2pb0_A	420	Structure Of Biosynthetic N-Acetylornithine Aminotr		1e-22
2eh6_A	375	Crystal Structure Of Acetylornithine Aminotransfera		1e-22
1vef_A	395	Acetylornithine Aminotransferase From Thermus Therm		8e-22
3ruy_A	392	Crystal Structure Of The Ornithine-Oxo Acid Transam		2e-21
2byl_A	439	Structure Of Ornithine Aminotransferase Triple Muta		7e-19
2e54_A	385	Crystal Structure Of Acetylornithine Aminotransfera		1e-18
2ord_A	397	Crystal Structure Of Acetylornithine Aminotransfera		2e-18
1szk_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		2e-18
1sf2_A	426	Structure Of E. Coli Gamma-Aminobutyrate Aminotrans		2e-18
1szs_A	426	The Structure Of Gamma-aminobutyrate Aminotransfera		2e-18
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		5e-18
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		6e-18
1szu_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		7e-18
2can_A	402	Human Ornithine Aminotransferase Complexed With L-C		9e-18
2byj_A	439	Ornithine Aminotransferase Mutant Y85i Length = 439		1e-17
1oat_A	439	Ornithine Aminotransferase Length = 439		1e-17
3r4t_A	467	Crystal Structure Of 4-Aminobutyrate Aminotransfera		2e-17
3oks_A	451	Crystal Structure Of 4-Aminobutyrate Transaminase F		5e-17
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		7e-17
4ffc_A	453	Crystal Structure Of A 4-Aminobutyrate Aminotransfe		1e-16
2eo5_A	419	Crystal Structure Of 4-Aminobutyrate Aminotransfera		1e-16
3nui_A	478	Crystal Structure Of Omega-Transferase From Vibrio		3e-16
3hmu_A	472	Crystal Structure Of A Class Iii Aminotransferase F		3e-16
4atp_A	456	Structure Of Gaba-Transaminase A1r958 From Arthroba		1e-15
4e3r_A	473	Plp-Bound Aminotransferase Mutant Crystal Structure		1e-15
4e3q_A	473	Pmp-Bound Form Of Aminotransferase Crystal Structur		2e-15
3nx3_A	395	Crystal Structure Of Acetylornithine Aminotransfera		2e-15
4grx_A	465	Structure Of An Omega-Aminotransferase From Paracoc		9e-15
3q8n_A	453	Crystal Structure Of 4-Aminobutyrate Transaminase F		1e-13
3a8u_X	449	Crystal Structure Of Omega-Amino Acid:pyruvate Amin		2e-13
3i5t_A	476	Crystal Structure Of Aminotransferase Prk07036 From		8e-13
3i4j_A	430	Crystal Structure Of Aminotransferase, Class Iii Fr		1e-12
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		1e-12
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		1e-12
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		1e-12
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		2e-12
4a6r_A	459	Crystal Structure Of The Omega Transaminase From Ch		2e-12
1dty_A	429	Crystal Structure Of Adenosylmethionine-8-Amino-7-O		9e-12
1qj3_A	429	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		9e-12
1mgv_A	429	Crystal Structure Of The R391a Mutant Of 7,8-Diamin		9e-12
3gju_A	459	Crystal Structure Of A Putative Aminotransferase (M		2e-11
3dod_A	448	Crystal Structure Of Plp Bound 7,8-diaminopelargoni		3e-11
3du4_A	448	Crystal Structure Of 7-Keto-8-Aminopelargonic Acid		3e-11
3tft_A	457	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		4e-11
1s08_A	429	Crystal Structure Of The D147n Mutant Of 7,8- Diami		4e-11
1s09_A	429	Crystal Structure Of The Y144f Mutant Of 7,8- Diami		4e-11
1s0a_A	429	Crystal Structure Of The Y17f Mutant Of 7,8- Diamin		4e-11
3fcr_A	459	Crystal Structure Of Putative Aminotransferase (Yp_		5e-11
1s07_A	429	Crystal Structure Of The R253a Mutant Of 7,8-Diamin		6e-11
1s06_A	429	Crystal Structure Of The R253k Mutant Of 7,8- Diami		1e-10
3lv2_A	462	Crystal Structure Of Mycobacterium Tuberculosis 7,8		4e-10
3bv0_A	437	Crystal Structure Of Plp Bound 7,8-Diaminopelargoni		4e-10
2cfb_A	411	Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm		7e-10
2jjh_A	449	E243 Mutant Of M. Tuberculosis Rv3290c Length = 449		3e-09
2jjf_A	449	N328a Mutant Of M. Tuberculosis Rv3290c Length = 44		6e-09
2cin_A	449	Lysine Aminotransferase From M. Tuberculosis In The		6e-09
2jje_A	449	Crystal Structure Of T330s Mutant Of Rv3290c From M		1e-08
3fq7_A	427	Gabaculine Complex Of Gsam Length = 427		4e-08
2gsa_A	432	Crystal Structure Of Glutamate-1-Semialdehyde Amino		4e-08
2hoy_A	432	Inter-Subunit Signaling In Gsam Length = 432		4e-08
2epj_A	434	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		5e-08
3fq8_A	427	M248i Mutant Of Gsam Length = 427		8e-08
3fqa_A	427	Gabaculien Complex Of Gabaculine Resistant Gsam Ver		9e-08
2zuk_A	439	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		2e-07
3dxw_A	452	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		2e-07
3l44_A	434	Crystal Structure Of Bacillus Anthracis Heml-1, Glu		2e-07
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		3e-07
2e7u_A	424	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		2e-06
3k28_A	429	Crystal Structure Of A Glutamate-1-Semialdehyde Ami		2e-06
2cy8_A	453	Crystal Structure Of D-Phenylglycine Aminotransfera		5e-06
3bs8_A	438	Crystal Structure Of Glutamate 1-Semialdehyde Amino		4e-05
4a0g_A	831	Structure Of Bifunctional Dapa Aminotransferase-Dtb		9e-05
4a0f_A	831	Structure Of Selenomethionine Substituted Bifunctio		5e-04

>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Query: 58  ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
           A+I E IQG  GV      FL+   EL   +N L I DEVQTG GRTG+ Y  +  +GV+
Sbjct: 186 AVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY-AYMHYGVT 244
Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
           PD++T AK +  GFP+GA++ T E A+V+T   H  T+GGNP+   +A  VL++I   E+
Sbjct: 245 PDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEM 304
Query: 178 QYNCKQ 183
               KQ
Sbjct: 305 LNGVKQ 310

>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 58  ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
           A++ E IQG  GV+     FL+   +L   +  L + DEVQ G GRTGD  + +  +GV+
Sbjct: 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYGVT 262
Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
           PDI+T AK +  GFP+ A++TT EIA      +H +T+GGNP+ C +A    D+I   E+
Sbjct: 263 PDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEV 322
Query: 178 QYNCKQVSAQIIGYLRVV 195
                    Q + +L+ +
Sbjct: 323 LQGIHTKRQQFVQHLQAI 340

>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Query: 49  YNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY 108
           Y +     A +I E IQG  GV E    FL +  E+ K  + L I DEVQTG GRTG+ +
Sbjct: 166 YKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-F 224
Query: 109 WGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTV 168
           + ++   + PD++ +AKG+  G P+GA++   E+AQ  T  +H +TFGGNP+ C   + V
Sbjct: 225 YAYQHFNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVV 284
Query: 169 LDVIKDEELQYNCKQV 184
           +D +  E+L  + ++V
Sbjct: 285 VDEV--EKLLPHVREV 298

>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395

Iteration: 1
 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E +QG  GV+     FLR A E+ +    L I DE+QTG GRTG  +  FE  G+
Sbjct: 187 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGI 245
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PDI+T+AK +  G P+G  V   E+A+ + K  H  TFGGNP+        +  ++   
Sbjct: 246 VPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTR 305
Query: 177 LQYNCKQVSAQIIGYLRVV 195
           L     ++    +  LR +
Sbjct: 306 LWERAAELGPWFMEKLRAI 324

>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA I E IQG +G+   P  FL+ A E+ K  N LF++DE+QTG GRTG   +  +   V
Sbjct: 184 AAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTG-KVFACDWDNV 242
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
           +PD+  +   +  G FP+       +I  V    +H +TFGGNP+ C ++   L+V+++E
Sbjct: 243 TPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEE 302
Query: 176 ELQYNCKQVSAQIIGYLRVV 195
           +L     Q+  +++G L+ +
Sbjct: 303 KLTERSLQLGEKLVGQLKEI 322

>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA + E IQG +GV      +L    EL   +  LFI+DE+QTG  RTG  +   +   V
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYENV 283
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
            PDIV + K ++ G +P+ AV+   +I   +    HF+T+GGNP+GC +A   L+V+++E
Sbjct: 284 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEE 343
Query: 176 ELQYNCKQV 184
            L  N  ++
Sbjct: 344 NLAENADKL 352

>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 77/148 (52%), Gaps = 12/148 (8%)
Query: 38  KFYEQLVNAFQY----NVP------ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
           K +E LV  F+Y    NV            A+  E IQG SG+    + FL  A +L   
Sbjct: 144 KPFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDE 203
Query: 88  NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
            + L + DEVQ G GRTG   + ++ +GV PD++T AKG+  G P+GAV+   E A VL 
Sbjct: 204 YDALLVFDEVQCGMGRTG-KLFAYQKYGVVPDVLTTAKGLGGGVPIGAVI-VNERANVLE 261
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDE 175
              H  TFGGNP+ C    TV+  +  E
Sbjct: 262 PGDHGTTFGGNPLACRAGVTVIKELTKE 289

>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 77/148 (52%), Gaps = 12/148 (8%)
Query: 38  KFYEQLVNAFQY----NVP------ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
           K +E LV  F+Y    NV            A+  E IQG SG+    + FL  A +L   
Sbjct: 156 KPFEPLVPGFEYFEFNNVEDLRRKXSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDE 215
Query: 88  NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
            + L + DEVQ G GRTG   + ++ +GV PD++T AKG+  G P+GAV+   E A VL 
Sbjct: 216 YDALLVFDEVQCGXGRTG-KLFAYQKYGVVPDVLTTAKGLGGGVPIGAVI-VNERANVLE 273
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDE 175
              H  TFGGNP+ C    TV+  +  E
Sbjct: 274 PGDHGTTFGGNPLACRAGVTVIKELTKE 301

>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 28  CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
           CPL+     +     +   F+ +      AA++ E +QG  G       F++R   L   
Sbjct: 173 CPLHGISEDDAI-ASIHRIFKNDAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDE 231
Query: 88  NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
           +  + I+DEVQ+G GRTG   +  E  GV+PD+ T AK IA GFP+  V    E+   + 
Sbjct: 232 HGIMLIADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVA 290
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
                 T+ GNP+ CV A  VL V + E L
Sbjct: 291 PGGLGGTYAGNPIACVAALEVLKVFEQENL 320

>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 28  CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
           CPL+     +     +   F+ +      AA++ E +QG  G       F++R   L   
Sbjct: 173 CPLHGISEDDAI-ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDE 231
Query: 88  NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
           +  + I+DEVQ+G GRTG   +  E  GV+PD+ T AK IA GFP+  V    E+   + 
Sbjct: 232 HGIMLIADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVA 290
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
                 T+ GNP+ CV A  VL V + E L
Sbjct: 291 PGGLGGTYAGNPIACVAALEVLKVFEQENL 320

>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 28  CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
           CPL+     +     +   F+ +      AA++ E +QG  G       F++R   L   
Sbjct: 173 CPLHGISEDDAI-ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDE 231
Query: 88  NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
           +  + I+DEVQ+G GRTG   +  E  GV+PD+ T AK IA GFP+  V    E+   + 
Sbjct: 232 HGIMLIADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVA 290
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
                 T+ GNP+ CV A  VL V + E L
Sbjct: 291 PGGLGGTYAGNPIACVAALEVLKVFEQENL 320

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 40  YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
           Y+ L  A +  +      A I E IQG +GV      +L+  Y++ K  N LF++DEVQT
Sbjct: 198 YDDL-EALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT 256
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGN 158
           G GRTG        + V PD++ + K ++ G +P+ AV+   +I  V+    H +T+GGN
Sbjct: 257 GLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGN 315
Query: 159 PVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
           P+   I    L+V+ +E+L  N +++    +  L+
Sbjct: 316 PLAASICVEALNVLINEKLCENAEKLGGPFLENLK 350

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA I E I    G+   P+ + +  +E  + +  L ISDEV  GFGRTG  + GF  + V
Sbjct: 217 AAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAF-GFXNYDV 275
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA------HFNTFGGNPVGCVIASTVL 169
            PDI+T AKGI + + P+ A     EI +            H NTFGGNP  C +A   L
Sbjct: 276 KPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNL 335
Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
           ++I++E L     Q  + ++  L+
Sbjct: 336 EIIENENLIERSAQXGSLLLEQLK 359

>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
Query: 28  CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
           CPL+     +     +   F+ +      AA++ E +QG  G       F++R   L   
Sbjct: 173 CPLHGISEDDAI-ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDE 231
Query: 88  NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
           +  + I+DE Q+G GRTG   +  E  GV+PD+ T AK IA GFP+  V    E+   + 
Sbjct: 232 HGIMLIADEAQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVA 290
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
                 T+ GNP+ CV A  VL V + E L
Sbjct: 291 PGGLGGTYAGNPIACVAALEVLKVFEQENL 320

>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA + E IQG +GV      +L    EL   +  LFI+DE+QTG  RTG  +   +   V
Sbjct: 188 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYENV 246
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
            PDIV + K ++ G +P+ AV+   +I   +    H +T+GGNP+GC +A   L+V+++E
Sbjct: 247 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEE 306
Query: 176 ELQYNCKQV 184
            L  N  ++
Sbjct: 307 NLAENADKL 315

>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA + E IQG +GV      +L    EL   +  LFI+DE+QTG  RTG  +   +   V
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYENV 283
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
            PDIV + K ++ G +P+ AV+   +I   +    H +T+GGNP+GC +A   L+V+++E
Sbjct: 284 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEE 343
Query: 176 ELQYNCKQV 184
            L  N  ++
Sbjct: 344 NLAENADKL 352

>pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA + E IQG +GV      +L    EL   +  LFI+DE+QTG  RTG  +   +   V
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYENV 283
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
            PDIV + K ++ G +P+ AV+   +I   +    H +T+GGNP+GC +A   L+V+++E
Sbjct: 284 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEE 343
Query: 176 ELQYNCKQV 184
            L  N  ++
Sbjct: 344 NLAENADKL 352

>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Query: 41  EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG 100
           E+ +N     +     AA+I E I G  G       FL       + N+ +FI+DEVQTG
Sbjct: 230 ERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTG 289
Query: 101 FGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPV 160
           F RTG   +  +   V PD++  A GIA+GFP+ AV    EI      +    TFGGNPV
Sbjct: 290 FARTG-AMFACDHENVEPDLIVTAXGIADGFPLSAVTGRAEIMDAPHTSGLGGTFGGNPV 348
Query: 161 GCVIASTVLDVIKDEELQYNCKQVSAQIIGYL 192
            C  A   ++ I+ + +    +Q+   ++  L
Sbjct: 349 ACAAALATIETIERDGMVERARQIERLVMDRL 380

>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA++ E IQG  G       FL    +  + N+ +FI+DEVQTGF RTG   +  E  G+
Sbjct: 229 AAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTG-AMFACEHEGI 287
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PD++  A GIA G P+ AV    EI      +    T+GGNP+ C  A   ++ I+ E 
Sbjct: 288 DPDLIVTAXGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEG 347
Query: 177 LQYNCKQV 184
           L    +Q+
Sbjct: 348 LVARAQQI 355

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 40  YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
           Y+ L  A +  +      A I E +QG +GV      +      L K  N LF++DEVQT
Sbjct: 179 YDDL-EALEKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQT 237
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGN 158
           G GRTG        +GV PD++ + K ++ G +P+ A++   ++  VL    H +T+GGN
Sbjct: 238 GLGRTG-KLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGN 296
Query: 159 PVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
           P+   I    L V+ +E+L  N  ++ A  +  L+
Sbjct: 297 PLAAAICVEALKVLINEKLCENADKLGAPFLQNLK 331

>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E IQG  G       FL         N  +FI+DEVQTGF RTG  ++  E  G+
Sbjct: 227 AAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEGI 285
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PDIVTMA GIA G P+ AV    E+   +       T+GGNPV C  A   L V+++ +
Sbjct: 286 VPDIVTMAXGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELD 345
Query: 177 LQYNCKQVSAQIIGYLRVV 195
           L    + + A +   L  +
Sbjct: 346 LPARARAIEASVTSRLSAL 364

>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 84/191 (43%), Gaps = 34/191 (17%)
Query: 31  NQCEASNKFYEQLVNAFQYN-VPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN 89
           N  E  N+  E + +    N VP    A +  E IQG  G    P+ F     +L K   
Sbjct: 187 NPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYG 246
Query: 90  GLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTK 148
            L + DEVQ G GRTG   +  E     PD++T+AK +  G  P+GA +   ++      
Sbjct: 247 ILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD--FKP 303
Query: 149 AAHFNTFGGNPVGCVIASTVLDVIKD-------------EELQ----------------Y 179
             H NTFGGN + C I S V+D++KD             EELQ                Y
Sbjct: 304 GMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGLADDVRGIGLAWGLEY 363
Query: 180 NCKQVSAQIIG 190
           N K+V  +IIG
Sbjct: 364 NEKKVRDRIIG 374

>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 17/193 (8%)
Query: 19  PIQTTRYCSCPL-----NQCEASNKFYEQLVNAFQYNVPITGA---AALIAESIQGVSGV 70
           P+    + +CP       + E   +F  +L    +  +   GA   A   AE + G  GV
Sbjct: 186 PLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGV 245
Query: 71  KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG 130
               + + +    +++  +   ISDEV  GFGRTG N WG   +  +PD +  +K +  G
Sbjct: 246 IPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-NTWGCVTYDFTPDAIISSKNLTAG 304
Query: 131 -FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182
            FPMGAV+   E+++ L  A        H  T  G+PVGC IA   +DV+ +E L  N +
Sbjct: 305 FFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVR 364
Query: 183 QVSAQIIGYLRVV 195
           +++ +    L+ +
Sbjct: 365 RLAPRFEERLKHI 377

>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 77/133 (57%), Gaps = 4/133 (3%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA IAE +QG  GV   P  +      +    + L I+DEV  GFGRTG N++G +  G+
Sbjct: 225 AAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQTMGI 283
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIK 173
            P I+T+AKG+++G+ P+G  +   E+A V+ K    H  T+ G+PV   +A   L +++
Sbjct: 284 RPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE 343
Query: 174 DEELQYNCKQVSA 186
           +E +  + + V+A
Sbjct: 344 EENILDHVRNVAA 356

>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 1/137 (0%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E IQG  G       FL    E  K    +FI+DEVQ+GF RTG+ ++  +  GV
Sbjct: 228 AAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE-WFAVDHEGV 286
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PDI+TMAKGIA G P+ A+    ++   +       T+GGNPV C  A   +D ++  +
Sbjct: 287 VPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHD 346
Query: 177 LQYNCKQVSAQIIGYLR 193
           L    + +    +G LR
Sbjct: 347 LNGRARHIEELALGKLR 363

>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 19  PIQTTRYCSCPL-----NQCEASNKFYEQLVNAFQYNVPITGA---AALIAESIQGVSGV 70
           P+    + +CP       + E   +F  +L    +  +   GA   A   AE + G  GV
Sbjct: 192 PLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGV 251
Query: 71  KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG 130
               + + +    +++  +   ISDEV  GFGRTG N WG   +  +PD +  +  +  G
Sbjct: 252 IPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTG-NTWGCVTYDFTPDAIISSXNLTAG 310
Query: 131 -FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182
            FPMGAV+   E+++ L  A        H  T  G+PVGC IA   +DV+ +E L  N +
Sbjct: 311 FFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVR 370
Query: 183 QVSAQIIGYLRVV 195
           +++ +    L+ +
Sbjct: 371 RLAPRFEERLKHI 383

>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 19  PIQTTRYCSCPL-----NQCEASNKFYEQLVNAFQYNVPITGA---AALIAESIQGVSGV 70
           P+    + +CP       + E   +F  +L    +  +   GA   A   AE + G  GV
Sbjct: 192 PLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVXGAGGV 251
Query: 71  KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG 130
               + + +    +++  +   ISDEV  GFGRTG N WG   +  +PD +  +K +  G
Sbjct: 252 IPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-NTWGCVTYDFTPDAIISSKNLTAG 310
Query: 131 -FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182
            FP GAV+   E+++ L  A        H  T  G+PVGC IA   +DV+ +E L  N +
Sbjct: 311 FFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVXNEGLAENVR 370
Query: 183 QVSAQIIGYLRVV 195
           +++ +    L+ +
Sbjct: 371 RLAPRFEERLKHI 383

>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 58  ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
           A+I ES+QG  G+    + F +   +L    + L I+DE+Q G GR+G  ++ +E   + 
Sbjct: 182 AIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSG-KFFAYEHAQIL 240
Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIA-QVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
           PDI T AK +  G  +GA V   ++A   L    H +T+GGNP+ C   + V ++ K+E+
Sbjct: 241 PDIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEK 300
Query: 177 LQYNCKQVS 185
           +  N  +++
Sbjct: 301 ILENVNKLT 309

>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 19  PIQTTRYCSCPL-----NQCEASNKFYEQLVNAFQYNVPITGA---AALIAESIQGVSGV 70
           P+    + +CP       + E   +F  +L    +  +   GA   A   AE + G  GV
Sbjct: 184 PLPGFIHLTCPHYWRYGEEGETEAQFVARLARELEDTITREGADTIAGFFAEPVMGAGGV 243
Query: 71  KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG 130
               + + +    +++  +   ISDEV  GFGRTG N WG   +   PD +  +  +  G
Sbjct: 244 IPPAKGYFQAILPILRKYDIPMISDEVICGFGRTG-NTWGCLTYDFMPDAIISSXNLTAG 302
Query: 131 -FPMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182
            FPMGAV+   ++A+ +  A        H  T  G+PVGC IA   +DV+ +E L  N +
Sbjct: 303 FFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVR 362
Query: 183 QVSAQIIGYLRVV 195
           +++ +    L+ +
Sbjct: 363 RLAPRFEAGLKRI 375

>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA++ E + G  G       FL    +    N  +F++DEVQTGF RTG   +  E   V
Sbjct: 230 AAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTG-ALFACEHENV 288
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PD++  AKGIA G P+ AV    EI           T+GGNP+ C  A  V+D I+ E 
Sbjct: 289 VPDLIVTAKGIAGGLPLSAVTGRAEIMDGPQSGGLGGTYGGNPLACAAALAVIDTIEREN 348
Query: 177 LQYNCKQVSAQIIGYL 192
           L    + +   ++  L
Sbjct: 349 LVARARAIGETMLSRL 364

>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 11/139 (7%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+  E + G +GV   P  +L+R  E+   +N L + DEV TGFGRTG + +G +  GV
Sbjct: 221 AAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SMFGADSFGV 279
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVL---------TKAAHFNTFGGNPVGCVIAS 166
           +PD++ +AK + NG  PMGAV+ +TEI Q            +  H  T+  +PV C    
Sbjct: 280 TPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGL 339
Query: 167 TVLDVIKDEELQYNCKQVS 185
             L +++ E L  +  +V+
Sbjct: 340 AALCLLQKENLVQSVAEVA 358

>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 16/176 (9%)
Query: 25  YCSCPLNQCEASNK----FYEQLVNAFQYNVPITGA---AALIAESIQGVSGVKEFPRYF 77
           + S P N   A N+    F + LV  F+  +   G    AA +AE I    GV   P  +
Sbjct: 185 FLSSP-NPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGY 243
Query: 78  LRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGF-PMGAV 136
             R   + + ++ L+ISDEV TGFGR G+ +   ++ GV PDI+T AKG+ +G+ P+G +
Sbjct: 244 HARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGL 303
Query: 137 VTTTEIAQVLT----KAAHFN---TFGGNPVGCVIASTVLDVIKDEELQYNCKQVS 185
             +  +   ++    K + F    T+   PV C  A   +++++ E +    ++++
Sbjct: 304 AISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMA 359

>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 8/146 (5%)
Query: 57  AALIAESIQGVS--GVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
           AA +AE + G S   +   P Y+  R  ++      +FI+DEV +G GR G         
Sbjct: 192 AAFMAEPVVGASDAALAPAPGYY-ERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWS 250
Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA----HFNTFGGNPVGCVIASTVL 169
           GV+PDI  + KG+A G+ P+  ++   ++ + +   +    H  T+ G+PV      +VL
Sbjct: 251 GVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVL 310
Query: 170 DVIKDEELQYNCKQVSAQIIGYLRVV 195
           D+++ E+L    K+  AQ++  L+ +
Sbjct: 311 DIVEREDLTGAAKERGAQLLAGLQAL 336

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA IAE I    G+ E P  ++       ++   L I DE QTG GRTG   +  +  GV
Sbjct: 204 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFACQRDGV 262
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKD 174
           +PDI+T++K +  G P+ A+VT+  I +   +  +  + T   +P+   +   VLDV++ 
Sbjct: 263 TPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR 322
Query: 175 EEL 177
           + L
Sbjct: 323 DGL 325

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA IAE I    G+ E P  ++       ++   L I DE QTG GRTG   +  +  GV
Sbjct: 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFACQRDGV 263
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKD 174
           +PDI+T++K +  G P+ A+VT+  I +   +  +  + T   +P+   +   VLDV++ 
Sbjct: 264 TPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR 323
Query: 175 EEL 177
           + L
Sbjct: 324 DGL 326

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA IAE I    G+ E P  ++       ++   L I DE QTG GRTG   +  +  GV
Sbjct: 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFACQRDGV 263
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKD 174
           +PDI+T++K +  G P+ A+VT+  I +   +  +  + T   +P+   +   VLDV++ 
Sbjct: 264 TPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR 323
Query: 175 EEL 177
           + L
Sbjct: 324 DGL 326

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA IAE I    G+ E P  ++       ++   L I DE QTG GRTG   +  +  GV
Sbjct: 203 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFACQRDGV 261
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKD 174
           +PDI+T++K +  G P+ A+VT+  I +   +  +  + T   +P+   +   VLDV++ 
Sbjct: 262 TPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR 321
Query: 175 EEL 177
           + L
Sbjct: 322 DGL 324

>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA + E IQG  GV   P  +      + +  + L ++DEV  GFGRTG+ ++G +  G 
Sbjct: 221 AAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE-WFGHQHFGF 279
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHFN---TFGGNPVGCVIASTVLDVI 172
            PD+ T AKG+++G+ P+GAV     +A+ L     FN   T+ G+PV   +A   +  +
Sbjct: 280 QPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAAL 339
Query: 173 KDEELQYNCKQ 183
           +DE +    K 
Sbjct: 340 RDEGIVQRVKD 350

>pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 40  YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
           + +L+ A ++ +    AA +I   +QG  G++ +   +L+R  ++      L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
           GFGRTG   +  E   ++PDI+ + K +  G   + A +TT E+A+ ++        H  
Sbjct: 250 GFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           TF GNP+ C  A+  L +++  + Q     +  Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 40  YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
           + +L+ A ++ +    AA +I   +QG  G++ +   +L+R  ++      L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
           GFGRTG   +  E   ++PDI+ + K +  G   + A +TT E+A+ ++        H  
Sbjct: 250 GFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           TF GNP+ C  A+  L +++  + Q     +  Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 40  YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
           + +L+ A ++ +    AA +I   +QG  G++ +   +L+R  ++      L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
           GFGRTG   +  E   ++PDI+ + K +  G   + A +TT E+A+ ++        H  
Sbjct: 250 GFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           TF GNP+ C  A+  L +++  + Q     +  Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 57  AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AAL  ES +QG SG+   P  +L    EL  + + L I DEV TGFGRTG   +  E   
Sbjct: 212 AALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTG-KMFACEHEN 270
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQV-------LTKAAHFNTFGGNPVGCVIAST 167
           V PD++   KGI  G+ P+     T +I +        L    H +++ GN +GC +A  
Sbjct: 271 VQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALE 330
Query: 168 VLDVIKDEELQYNCKQVSAQI 188
            L + + E +     + S ++
Sbjct: 331 NLALFESENIVEQVAEKSKKL 351

>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 57  AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AAL  ES +QG SG+   P  +L    EL  + + L I DEV TGFGRTG   +  E   
Sbjct: 212 AALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTG-KMFACEHEN 270
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQV-------LTKAAHFNTFGGNPVGCVIAST 167
           V PD++   KGI  G+ P+     T +I +        L    H +++ GN +GC +A  
Sbjct: 271 VQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALE 330
Query: 168 VLDVIKDEELQYNCKQVSAQI 188
            L + + E +     + S ++
Sbjct: 331 NLALFESENIVEQVAEKSKKL 351

>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 56  AAALIAESIQGVSGVK-EFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
           AA ++   +QG  G++   PRY L    ++ +    L I DE+ TGFGRTG  +   +  
Sbjct: 235 AAVVVEPVVQGAGGMRFHDPRY-LHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHA 292
Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTV 168
           GVSPDI+ + K +  G+  + A + T ++A  ++  A     H  TF  NP+ C ++   
Sbjct: 293 GVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVAS 352
Query: 169 LDVIKDEELQYNCKQVSAQIIGYL 192
           ++++  ++ +    +++A +   L
Sbjct: 353 VELLLGQDWRTRITELAAGLTAGL 376

>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 40  YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
           + +L+ A ++ +    AA +I   +QG  G++ +   +L+R  ++      L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
           GFGRTG   +  E   ++PDI+ +   +  G   + A +TT E+A+ ++        H  
Sbjct: 250 GFGRTG-KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           TF GNP+ C  A+  L +++  + Q     +  Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 40  YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
           + +L+ A ++ +    AA +I   +QG  G++ +   +L+R  ++      L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
           GFGRTG   +  E   ++PDI+ +   +  G   + A +TT E+A+ ++        H  
Sbjct: 250 GFGRTG-KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           TF GNP+ C  A+  L +++  + Q     +  Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 40  YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
           + +L+ A ++ +    AA +I   +QG  G++ +   +L+R  ++      L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
           GFGRTG   +  E   ++PDI+ +   +  G   + A +TT E+A+ ++        H  
Sbjct: 250 GFGRTG-KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           TF GNP+ C  A+  L +++  + Q     +  Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 40  YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
           + +L+ A ++ +    AA +I   +QG  G++ +   +L+R  ++      L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
           GFG TG   +  E   ++PDI+ + K +  G   + A +TT E+A+ ++        H  
Sbjct: 250 GFGATG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           TF GNP+ C  A+  L +++  + Q     +  Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 40  YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
           + +L+ A ++ +    AA +I   +QG  G++ +   +L+R  ++      L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
           GFG+TG   +  E   ++PDI+ +   +  G   + A +TT E+A+ ++        H  
Sbjct: 250 GFGKTG-KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           TF GNP+ C  A+  L +++  + Q     +  Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 56  AAALIAESIQGVSGVK-EFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
           AA ++   +QG  G++   PRY L    ++ +    L I DE+ TGFGRTG  +   +  
Sbjct: 240 AAVVVEPVVQGAGGMRFHDPRY-LHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHA 297
Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTV 168
           GVSPDI+ + K +  G+  + A + T ++A  ++  A        TF  NP+ C ++   
Sbjct: 298 GVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVAS 357
Query: 169 LDVIKDEELQYNCKQVSAQIIGYL 192
           ++++  ++ +    +++A +   L
Sbjct: 358 VELLLGQDWRTRITELAAGLTAGL 381

>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 56  AAALIAESIQGVSGVK-EFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
           AA ++   +QG  G++   PRY L    ++ +    L I DE+ TGFGRTG  +   +  
Sbjct: 215 AAVVVEPVVQGAGGMRFHDPRY-LHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHA 272
Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTV 168
           GVSPDI+ + K +  G+  + A + T ++A  ++  A        TF  NP+ C ++   
Sbjct: 273 GVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVAS 332
Query: 169 LDVIKDEELQYNCKQVSAQIIGYL 192
           ++++  ++ +    +++A +   L
Sbjct: 333 VELLLGQDWRTRITELAAGLTAGL 356

>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 29  PLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN 88
           P N  EA ++ +EQ  N           A +I E + G +G       FL    EL K  
Sbjct: 166 PYNDLEAVSRLFEQYPNDI---------AGVILEPVVGNAGFIPPDAGFLEGLRELTKQY 216
Query: 89  NGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
             L + DEV TGF      Y G  E  GV+PD+ T+ K I  G P+GA     EI +++ 
Sbjct: 217 GALLVFDEVMTGFRIA---YGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRAEIMKMVA 273
Query: 148 KAA---HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII 189
            A       T  GNP+        L+++       +  +++ +++
Sbjct: 274 PAGPVYQAGTLSGNPLAMTAGIKTLEILSRPGSYEHLDRITGKLV 318

>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A  +AE IQG  G + F   F     EL    + L I DEVQTG G TG   W ++   V
Sbjct: 233 ACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDV 291
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFN-TFGGNPVGCVIASTVLDVIKDE 175
           +PDIV   K       M           V    +  N T+GGN    V A  +L+VI+ E
Sbjct: 292 APDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAE 351
Query: 176 EL 177
            L
Sbjct: 352 GL 353

>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A  +AE IQG  G + F   F     EL    + L I DEVQTG G TG   W ++   V
Sbjct: 233 ACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDV 291
Query: 117 SPDIVTMAK-----GIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV 171
           +PDIV   K     G+  G  +  V     +  V ++ A  +T+GGN    V A  +L+V
Sbjct: 292 APDIVAFGKKTQVCGVMAGRRVDEVADN--VFAVPSRLA--STWGGNLTDMVRARRILEV 347
Query: 172 IKDEEL 177
           I+ E L
Sbjct: 348 IEAEGL 353

>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A  +AE IQG  G + F   F     EL    + L I DEVQTG G TG   W ++   V
Sbjct: 233 ACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDV 291
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFN-TFGGNPVGCVIASTVLDVIKDE 175
           +PDIV   K       M           V    +  N T+GGN    V A  +L+VI+ E
Sbjct: 292 APDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAE 351
Query: 176 EL 177
            L
Sbjct: 352 GL 353

>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A  +AE IQG  G + F   F     EL    + L I DEVQTG G TG   W ++   V
Sbjct: 233 ACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDV 291
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFN-TFGGNPVGCVIASTVLDVIKDE 175
           +PDIV   K       M           V    +  N ++GGN    V A  +L+VI+ E
Sbjct: 292 APDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSSWGGNLTDMVRARRILEVIEAE 351
Query: 176 EL 177
            L
Sbjct: 352 GL 353

>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 22  TTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRA 81
           T    + P N  EA    + +              A +I E I G SG       FL   
Sbjct: 175 TANTLTTPYNDLEAVKALFAENPGEI---------AGVILEPIVGNSGFIVPDAGFLEGL 225
Query: 82  YELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIANGFPMGAVVTTT 140
            E+   ++ L + DEV TGF      Y G  E  GV+PD+ T+ K I  G P+GA     
Sbjct: 226 REITLEHDALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKR 282
Query: 141 EIAQVLTKAAHF---NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           EI Q++  A       T  GNP+        L++++         Q++ ++
Sbjct: 283 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRL 333

>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 22  TTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRA 81
           T    + P N  EA    + +              A +I E I G SG       FL   
Sbjct: 180 TANTLTTPYNDLEAVKALFAENPGEI---------AGVILEPIVGNSGFIVPDAGFLEGL 230
Query: 82  YELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIANGFPMGAVVTTT 140
            E+   ++ L + DEV TGF      Y G  E  GV+PD+ T+ K I  G P+GA     
Sbjct: 231 REITLEHDALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKR 287
Query: 141 EIAQVLTKAAHF---NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           EI Q++  A       T  GNP+        L++++         Q++ ++
Sbjct: 288 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRL 338

>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 22  TTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRA 81
           T    + P N  EA    + +              A +I E I G SG       FL   
Sbjct: 180 TANTLTTPYNDLEAVKALFAENPGEI---------AGVILEPIVGNSGFIVPDAGFLEGL 230
Query: 82  YELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIANGFPMGAVVTTT 140
            E+   ++ L + DEV TGF      Y G  E  GV+PD+ T+ K I  G P+GA     
Sbjct: 231 REITLEHDALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKR 287
Query: 141 EIAQVLTKAAHF---NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           EI Q++  A       T  GNP+        L++++         Q++ ++
Sbjct: 288 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRL 338

>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 28  CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
            P N  EA  + + +      Y   I G   +I E +   +GV    R FL     L + 
Sbjct: 185 TPYNDVEALERVFAE------YGDRIAG---VIVEPVIANAGVIPPRREFLAALQRLSRE 235
Query: 88  NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
           +  L I DEV TGF    +   G+    +  DI+ + K I  GFP+GAV  + E+  +LT
Sbjct: 236 SGALLILDEVVTGFRLGLEGAQGY--FNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLT 293
Query: 148 ---KAAHFNTFGGNPVGCVIASTVLDVIKDE 175
              K  +  TF  +P+        L  +++E
Sbjct: 294 PQGKVFNAGTFNAHPITMAAGLATLKALEEE 324

>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 22  TTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRA 81
           T    + P N  EA    + +              A +I E I G SG       FL   
Sbjct: 175 TANTLTTPYNDLEAVKALFAENPGEI---------AGVILEPIVGNSGFIVPDAGFLEGL 225
Query: 82  YELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIANGFPMGAVVTTT 140
            E+   ++ L + DEV TGF      Y G  E  GV+PD+ T+ K I  G P+GA     
Sbjct: 226 REITLEHDALLVFDEVITGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKR 282
Query: 141 EIAQVLTKAAHF---NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           EI Q++  A       T  GNP+        L++++         Q++ ++
Sbjct: 283 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRL 333

>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 22  TTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRA 81
           T    + P N  EA    + +              A +I E I G SG       FL   
Sbjct: 175 TANTLTTPYNDLEAVKALFAENPGEI---------AGVILEPIVGNSGFIVPDAGFLEGL 225
Query: 82  YELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIANGFPMGAVVTTT 140
            E+   ++ L + DEV TGF      Y G  E  GV+PD+ T+ K I  G P+GA     
Sbjct: 226 REITLEHDALLVFDEVITGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKR 282
Query: 141 EIAQVLTKAAHF---NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
           EI Q++  A       T  GNP+        L++++         Q++ ++
Sbjct: 283 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRL 333

>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 51  VPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG 110
           VP     A   E IQ   G+   P  FLR+  ++ +++  L + DEV+ G  R+G  +  
Sbjct: 197 VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHC- 255
Query: 111 FEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLD 170
           FE  G  PDI+ + KG+  G P+ AV+   EI    +  A   T  GNP+       VL+
Sbjct: 256 FEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFA-MQTLHGNPISAAAGLAVLE 314
Query: 171 VIKDEEL 177
            I  ++L
Sbjct: 315 TIDRDDL 321

>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 51  VPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG 110
           VP     A   E IQ   G+   P  FLR+  ++ +++  L + DEV+ G  R+G  +  
Sbjct: 210 VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHC- 268
Query: 111 FEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLD 170
           FE  G  PDI+ + KG+  G P+ AV+   EI    +  A   T  GNP+       VL+
Sbjct: 269 FEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFA-MQTLHGNPISAAAGLAVLE 327
Query: 171 VIKDEEL 177
            I  ++L
Sbjct: 328 TIDRDDL 334

>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHG 115
           AA++ E I G  G+ E    FL +  EL+     L I DEV T F      Y G  ++ G
Sbjct: 204 AAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFX---YGGAQDLLG 260
Query: 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQ---VLTKAAHFNTFGGNPVGCVIASTVLDVI 172
           V+PD+  +   I  G P+GA     EI +    L  A    T  GNP         L+V+
Sbjct: 261 VTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXASGIACLEVL 320
Query: 173 KDEELQYNCKQVSAQI 188
           + E L     ++ A +
Sbjct: 321 QQEGLYEKLDELGATL 336

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 31  NQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNG 90
           NQ E +    E      +Y       A +I E IQ   G       F R+  ++ + +  
Sbjct: 234 NQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGC 293
Query: 91  LFISDEVQTGFGRTGDNYWGFEMHGVS--PDIVTMAKGIAN-GFPMGAVVTTTEIAQVLT 147
            F+ DEVQTG G TG  +W  E  G+    D++T +K +   GF            ++  
Sbjct: 294 AFLVDEVQTGGGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI-- 350
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
               FNT+ G+P   ++ + V+++IK E+L  N
Sbjct: 351 ----FNTWLGDPSKNLLLAEVINIIKREDLLSN 379

>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF-----GRTGDNYWGF 111
           AA+I E + G +GV      FL+  +E  K+   L I+DEV TGF     G T       
Sbjct: 201 AAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRLAFGGAT------- 252
Query: 112 EMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQ---VLTKAAHFNTFGGNPVGCVIASTV 168
           E+ G+ PD+VT+ K +  G P  A     EI +    L       T  GNP+        
Sbjct: 253 ELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLAT 312
Query: 169 LDVIKD 174
           L+++++
Sbjct: 313 LELLEE 318

>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A +I E + G  GV      FL    E+ + N  L I DEV TGF R   N  G   +GV
Sbjct: 202 ACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGF-RVAYN-CGQGYYGV 259
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA---HFNTFGGNPV 160
           +PD+  + K I  G P+GA     EI + +  +       T  GNP+
Sbjct: 260 TPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPL 306

>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA IAE +    GV      FLR   EL +    LFI DEV +GF R G N+    +  V
Sbjct: 203 AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVG-NHGMQALLDV 260
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA-----HFNTFGGNP 159
            PD+  +AK  A G P G +    ++  VL++ +     H  TF GNP
Sbjct: 261 QPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNP 308

>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 26  CSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELI 85
            + P N  E+    ++Q    F  ++     A +I E + G  GV      FL+   ++ 
Sbjct: 188 ITVPYNDLESVKLAFQQ----FGEDI-----AGVIVEPVAGNMGVVPPQEGFLQGLRDIT 238
Query: 86  KSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQV 145
           +    L I DEV TGF    +   G+   GV+PD+  + K I  G P+GA     EI + 
Sbjct: 239 EQYGSLLIFDEVMTGFRVDYNCAQGY--FGVTPDLTCLGKVIGGGLPVGAYGGKAEIMEQ 296
Query: 146 LTKAA---HFNTFGGNPV 160
           +  +       T  GNP+
Sbjct: 297 IAPSGPIYQAGTLSGNPL 314

>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 8/131 (6%)
Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A +I   I G  G+      F R      ++     I DEV TGF R G      E+ G 
Sbjct: 597 ALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLGC 655
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEI------AQVLTKAAHFNTFGGNPVGCVIASTVL 169
            PDI   AK +  G  P+   + T  +         L    H +++  + +GC  A+  +
Sbjct: 656 KPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAI 715
Query: 170 DVIKDEELQYN 180
              KD E  +N
Sbjct: 716 QWFKDPETNHN 726

>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 56  AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
            A +I   I G  G       F R      ++     I DEV TGF R G      E+ G
Sbjct: 596 GALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLG 654
Query: 116 VSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA------HFNTFGGNPVGCVIASTV 168
             PDI   AK +  G  P+   + T  +    +  +      H +++  +  GC  A+  
Sbjct: 655 CKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAXGCATAAKA 714
Query: 169 LDVIKDEELQYN 180
           +   KD E  +N
Sbjct: 715 IQWFKDPETNHN 726

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	6e-58
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	9e-58
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	3e-52
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	3e-52
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	4e-52
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	9e-49
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	1e-47
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	4e-47
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	9e-47
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	2e-46
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	6e-46
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	7e-45
1z7d_A	433	Ornithine aminotransferase; structural genomics co	2e-44
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	2e-44
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	1e-43
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	2e-43
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	2e-38
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	6e-37
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	9e-37
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	1e-35
3hmu_A	472	Aminotransferase, class III; structural genomics,	5e-35
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	5e-35
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	6e-34
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	2e-33
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	2e-32
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	3e-32
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	5e-32
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	2e-30
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	1e-12
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	7e-10
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	9e-10
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	9e-10
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	9e-10
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	1e-09
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	5e-09
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	2e-08

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score =  186 bits (476), Expect = 6e-58
 Identities = 45/193 (23%), Positives = 75/193 (38%), Gaps = 22/193 (11%)

Query: 3   PDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAE 62
           P  YR  +                    N         +   +           AA IAE
Sbjct: 170 PFTYRPRFER------------------NGAYDYLAELDYAFDLIDRQSS-GNLAAFIAE 210

Query: 63  SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVT 122
            I    G+ E P  ++       ++   L I DE QTG GRTG   +  +  GV+PDI+T
Sbjct: 211 PILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT-MFACQRDGVTPDILT 269

Query: 123 MAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
           ++K +  G P+ A+VT+  I +   +     + T   +P+   +   VLDV++ + L   
Sbjct: 270 LSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVAR 329

Query: 181 CKQVSAQIIGYLR 193
              +  ++   L 
Sbjct: 330 ANVMGDRLRRGLL 342

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score =  186 bits (475), Expect = 9e-58
 Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 24/191 (12%)

Query: 3   PDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAE 62
           PD YR                          + +      L+      VP     A   E
Sbjct: 171 PDPYRPYRN----------------------DPTGDAILTLLTEKLAAVPAGSIGAAFIE 208

Query: 63  SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVT 122
            IQ   G+   P  FLR+  ++ +++  L + DEV+ G  R+G     FE  G  PDI+ 
Sbjct: 209 PIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR-LHCFEHEGFVPDILV 267

Query: 123 MAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182
           + KG+  G P+ AV+   EI    + A    T  GNP+       VL+ I  ++L    +
Sbjct: 268 LGKGLGGGLPLSAVIAPAEILDCAS-AFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAE 326

Query: 183 QVSAQIIGYLR 193
           +    +   L 
Sbjct: 327 RKGRLLRDGLS 337

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score =  172 bits (439), Expect = 3e-52
 Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 1/170 (0%)

Query: 24  RYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYE 83
           R                ++ +      +     AA++ E IQG  G       FL    +
Sbjct: 196 RDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD 255

Query: 84  LIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIA 143
             + N+ +FI+DEVQTGF RTG   +  E  G+ PD++  AKGIA G P+ AV    EI 
Sbjct: 256 WCRKNDVVFIADEVQTGFARTGA-MFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIM 314

Query: 144 QVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
                +    T+GGNP+ C  A   ++ I+ E L    +Q+   +   L 
Sbjct: 315 DSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLG 364

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score =  172 bits (438), Expect = 3e-52
 Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 3/166 (1%)

Query: 28  CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
                         + ++  +  +     AA+I E IQG  G       FL         
Sbjct: 200 DEPGLTGEE--AARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASE 257

Query: 88  NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
           N  +FI+DEVQTGF RTG  ++  E  G+ PDIVTMAKGIA G P+ AV    E+   + 
Sbjct: 258 NGVVFIADEVQTGFARTGA-WFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVY 316

Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
                 T+GGNPV C  A   L V+++ +L    + + A +   L 
Sbjct: 317 AGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLS 362

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score =  171 bits (436), Expect = 4e-52
 Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 1/153 (0%)

Query: 41  EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG 100
             +   F+ +      AA++ E +QG  G       F++R   L   +  + I+DEVQ+G
Sbjct: 185 ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSG 244

Query: 101 FGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPV 160
            GRTG   +  E  GV+PD+ T AK IA GFP+  V    E+   +       T+ GNP+
Sbjct: 245 AGRTGT-LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPI 303

Query: 161 GCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
            CV A  VL V + E L      +  ++   L 
Sbjct: 304 ACVAALEVLKVFEQENLLQKANDLGQKLKDGLL 336

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score =  161 bits (411), Expect = 9e-49
 Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 1/137 (0%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E +QG  GV+     FLR A E+ +    L I DE+QTG GRTG   + FE  G+
Sbjct: 187 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK-RFAFEHFGI 245

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PDI+T+AK +  G P+G  V   E+A+ + K  H  TFGGNP+        +  ++   
Sbjct: 246 VPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTR 305

Query: 177 LQYNCKQVSAQIIGYLR 193
           L     ++    +  LR
Sbjct: 306 LWERAAELGPWFMEKLR 322

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score =  159 bits (405), Expect = 1e-47
 Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 1/137 (0%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
            A++ E IQG  GV+     FL+   +L   +  L + DEVQ G GRTGD  + +  +GV
Sbjct: 203 CAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYGV 261

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
           +PDI+T AK +  GFP+ A++TT EIA      +H +T+GGNP+ C +A    D+I   E
Sbjct: 262 TPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPE 321

Query: 177 LQYNCKQVSAQIIGYLR 193
           +         Q + +L+
Sbjct: 322 VLQGIHTKRQQFVQHLQ 338

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score =  158 bits (403), Expect = 4e-47
 Identities = 50/177 (28%), Positives = 65/177 (36%), Gaps = 3/177 (1%)

Query: 19  PIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGA-AALIAESIQGVSGVKEFPRYF 77
           P     Y    L++   +    E L  A           A  +AE IQG  G + F   F
Sbjct: 194 PRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEF 253

Query: 78  LRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVV 137
                EL    + L I DEVQTG G TG   W ++   V+PDIV   K       M    
Sbjct: 254 FAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPDIVAFGKKTQVCGVMAGRR 312

Query: 138 TTTEIAQVLTKA-AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
                  V        +T+GGN    V A  +L+VI+ E L     Q    +   L 
Sbjct: 313 VDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLD 369

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score =  156 bits (397), Expect = 9e-47
 Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 3/137 (2%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A +I E IQG  GV E    FL +  E+ K  + L I DEVQTG GRTG+ ++ ++   +
Sbjct: 174 AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQHFNL 232

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PD++ +AKG+  G P+GA++   E+AQ  T  +H +TFGGNP+ C   + V+D +  E+
Sbjct: 233 KPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV--EK 290

Query: 177 LQYNCKQVSAQIIGYLR 193
           L  + ++V       L+
Sbjct: 291 LLPHVREVGNYFKEKLK 307

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score =  155 bits (395), Expect = 2e-46
 Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
            A+I ES+QG  G+    + F +   +L    + L I+DE+Q G GR+G  ++ +E   +
Sbjct: 181 CAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK-FFAYEHAQI 239

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIA-QVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
            PDI+T AK +  G  +GA V   ++A   L    H +T+GGNP+ C   + V ++ K+E
Sbjct: 240 LPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEE 299

Query: 176 ELQYNCKQVSAQIIGYLR 193
           ++  N  +++  +   L 
Sbjct: 300 KILENVNKLTPYLEQSLD 317

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score =  154 bits (393), Expect = 6e-46
 Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 2/137 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
            A+  E IQG SG+    + FL  A +L    + L + DEVQ G GRTG   + ++ +GV
Sbjct: 185 CAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK-LFAYQKYGV 243

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PD++T AKG+  G P+GAV+   E A VL    H  TFGGNP+ C    TV+  +  E 
Sbjct: 244 VPDVLTTAKGLGGGVPIGAVI-VNERANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEG 302

Query: 177 LQYNCKQVSAQIIGYLR 193
                ++    ++  L+
Sbjct: 303 FLEEVEEKGNYLMKKLQ 319

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score =  152 bits (386), Expect = 7e-45
 Identities = 54/192 (28%), Positives = 80/192 (41%), Gaps = 19/192 (9%)

Query: 3   PDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAE 62
           P+ YR  W                  P        +F E  +  F   VP    A +  E
Sbjct: 173 PNPYRNPWHIN-----------GYENPSELVNRVIEFIEDYI--FVNLVPPEEVAGIFFE 219

Query: 63  SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVT 122
            IQG  G    P+ F     +L K    L + DEVQ G GRTG   +  E     PD++T
Sbjct: 220 PIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK-LFAIENFNTVPDVIT 278

Query: 123 MAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNC 181
           +AK +  G  P+GA +   ++        H NTFGGN + C I S V+D++  ++L  + 
Sbjct: 279 LAKALGGGIMPIGATIFRKDLD--FKPGMHSNTFGGNALACAIGSKVIDIV--KDLLPHV 334

Query: 182 KQVSAQIIGYLR 193
            ++       L+
Sbjct: 335 NEIGKIFAEELQ 346

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score =  151 bits (384), Expect = 2e-44
 Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 2/138 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
            A I E IQG +GV      +L+  Y++ K  N LF++DEVQTG GRTG        + V
Sbjct: 214 CAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYNV 272

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
            PD++ + K ++ G +P+ AV+   +I  V+    H +T+GGNP+   I    L+V+ +E
Sbjct: 273 KPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINE 332

Query: 176 ELQYNCKQVSAQIIGYLR 193
           +L  N +++    +  L+
Sbjct: 333 KLCENAEKLGGPFLENLK 350

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score =  150 bits (381), Expect = 2e-44
 Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 2/138 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA I E IQG +G+   P  FL+ A E+ K  N LF++DE+QTG GRTG   +  +   V
Sbjct: 184 AAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTG-KVFACDWDNV 242

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
           +PD+  + K +  G FP+       +I  V    +H +TFGGNP+ C ++   L+V+++E
Sbjct: 243 TPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEE 302

Query: 176 ELQYNCKQVSAQIIGYLR 193
           +L     Q+  +++G L+
Sbjct: 303 KLTERSLQLGEKLVGQLK 320

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score =  149 bits (378), Expect = 1e-43
 Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA + E IQG +GV      +L    EL   +  LFI+DE+QTG  RTG  +   +   V
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYENV 283

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
            PDIV + K ++ G +P+ AV+   +I   +    H +T+GGNP+GC +A   L+V+++E
Sbjct: 284 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEE 343

Query: 176 ELQYNCKQVSAQIIGYLR 193
            L  N  ++   +   L 
Sbjct: 344 NLAENADKLGIILRNELM 361

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score =  150 bits (380), Expect = 2e-43
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 14/177 (7%)

Query: 25  YCSCPLNQCEASNKFYEQLVNA------FQYNVPITGAAALIAESIQGVSGVKEFPRYFL 78
               PL +    N+  E            +Y       A +I E IQ   G       F 
Sbjct: 222 RLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFF 281

Query: 79  RRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS--PDIVTMAKGIANGFPMGAV 136
           R+  ++ + +   F+ DEVQTG G TG  +W  E  G+    D++T +K +  G      
Sbjct: 282 RKLRDISRKHGCAFLVDEVQTGGGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGFFHK- 339

Query: 137 VTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
               E  +       FNT+ G+P   ++ + V+++IK E+L  N       ++  L 
Sbjct: 340 ----EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLL 392

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score =  136 bits (344), Expect = 2e-38
 Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 8/144 (5%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA I E I    G+   P+ +++  +E  + +  L ISDEV  GFGRTG   +GF  + V
Sbjct: 217 AAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTG-KAFGFMNYDV 275

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA------HFNTFGGNPVGCVIASTVL 169
            PDI+TMAKGI +   P+ A     EI +            H NTFGGNP  C +A   L
Sbjct: 276 KPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNL 335

Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
           ++I++E L     Q+ + ++  L+
Sbjct: 336 EIIENENLIERSAQMGSLLLEQLK 359

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score =  132 bits (334), Expect = 6e-37
 Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 9/145 (6%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A   AE + G  GV    + + +    +++  +   ISDEV  GFGRTG N WG   +  
Sbjct: 232 AGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-NTWGCVTYDF 290

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTV 168
           +PD +  +K +  G FPMGAV+   E+++ L  A        H  T  G+PVGC IA   
Sbjct: 291 TPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKA 350

Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
           +DV+ +E L  N ++++ +    L+
Sbjct: 351 IDVVMNEGLAENVRRLAPRFEERLK 375

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score =  131 bits (333), Expect = 9e-37
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 9/145 (6%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA I E I G  G+   P  +  +   ++K  + L ++DEV TGFGR G   +G + +G+
Sbjct: 223 AAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-TMFGSDHYGI 281

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTV 168
            PD++T+AKG+ +   P+  V+    + QVL + +       H  T+  +P+        
Sbjct: 282 KPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVAN 341

Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
           L++I + +L  N  +  A     L 
Sbjct: 342 LELIDEMDLVTNAGETGAYFRAELA 366

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score =  128 bits (324), Expect = 1e-35
 Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA + E IQG  GV   P  +      + +  + L ++DEV  GFGRTG  ++G +  G 
Sbjct: 221 AAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG-EWFGHQHFGF 279

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFN---TFGGNPVGCVIASTVLDVI 172
            PD+ T AKG+++G  P+GAV     +A+ L     FN   T+ G+PV   +A   +  +
Sbjct: 280 QPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAAL 339

Query: 173 KDEEL 177
           +DE +
Sbjct: 340 RDEGI 344

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score =  127 bits (321), Expect = 5e-35
 Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 4/134 (2%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA IAE +QG  GV   P  +      +    + L I+DEV  GFGRTG N++G +  G+
Sbjct: 225 AAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQTMGI 283

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIK 173
            P I+T+AKG+++G  P+G  +   E+A V+ K    H  T+ G+PV   +A   L +++
Sbjct: 284 RPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE 343

Query: 174 DEELQYNCKQVSAQ 187
           +E +  + + V+A 
Sbjct: 344 EENILDHVRNVAAP 357

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score =  126 bits (320), Expect = 5e-35
 Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 11/147 (7%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+  E + G +GV   P  +L+R  E+   +N L + DEV TGFGRTG + +G +  GV
Sbjct: 221 AAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SMFGADSFGV 279

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA---------HFNTFGGNPVGCVIAS 166
           +PD++ +AK + NG  PMGAV+ +TEI Q               H  T+  +PV C    
Sbjct: 280 TPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGL 339

Query: 167 TVLDVIKDEELQYNCKQVSAQIIGYLR 193
             L +++ E L  +  +V+      L 
Sbjct: 340 AALCLLQKENLVQSVAEVAPHFEKALH 366

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score =  123 bits (312), Expect = 6e-34
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 10/146 (6%)

Query: 57  AALIAE-SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AAL  E  +QG SG+   P  +L    EL  + + L I DEV TGFGRTG   +  E   
Sbjct: 212 AALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTG-KMFACEHEN 270

Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIAST 167
           V PD++   KGI  G+ P+     T +I +             H +++ GN +GC +A  
Sbjct: 271 VQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALE 330

Query: 168 VLDVIKDEELQYNCKQVSAQIIGYLR 193
            L + + E +     + S ++   L+
Sbjct: 331 NLALFESENIVEQVAEKSKKLHFLLQ 356

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score =  123 bits (310), Expect = 2e-33
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE-MHG 115
           AA +AE I    GV   P  +  R   + + ++ L+ISDEV TGFGR G  ++  E + G
Sbjct: 223 AAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG-EWFASEKVFG 281

Query: 116 VSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIAST 167
           V PDI+T AKG+ +G  P+G +  +  +   ++          +  T+   PV C  A  
Sbjct: 282 VVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALA 341

Query: 168 VLDVIKDEELQYNCKQVSAQIIGYLR 193
            +++++ E +    ++++      L 
Sbjct: 342 NIELMEREGIVDQAREMADYFAAALA 367

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score =  119 bits (301), Expect = 2e-32
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 8/144 (5%)

Query: 57  AALIAESIQGVS-GVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE-MH 114
           AA +AE + G S         +  R  ++      +FI+DEV +G GR G +        
Sbjct: 192 AAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCG-SPLALSRWS 250

Query: 115 GVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA----HFNTFGGNPVGCVIASTVL 169
           GV+PDI  + KG+A G  P+  ++   ++ + +   +    H  T+ G+PV      +VL
Sbjct: 251 GVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVL 310

Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
           D+++ E+L    K+  AQ++  L+
Sbjct: 311 DIVEREDLTGAAKERGAQLLAGLQ 334

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score =  119 bits (300), Expect = 3e-32
 Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 57  AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AA+I E I QG  G++ +   +L+R  ++      L I+DE+ TGFGRTG   +  E   
Sbjct: 206 AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG-KLFACEHAE 264

Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVL----TKA-AHFNTFGGNPVGCVIASTVL 169
           ++PDI+ + K +  G   + A +TT E+A+ +         H  TF GNP+ C  A+  L
Sbjct: 265 IAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASL 324

Query: 170 DVIKDEELQYNCKQVSAQIIGYL 192
            +++  + Q     +  Q+   L
Sbjct: 325 AILESGDWQQQVADIEVQLREQL 347

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score =  118 bits (299), Expect = 5e-32
 Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 57  AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
           AA++ E + QG  G++     +L    ++ +    L I DE+ TGFGRTG   +  +  G
Sbjct: 235 AAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTG-ALFAADHAG 293

Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVL----TKA-AHFNTFGGNPVGCVIASTVL 169
           VSPDI+ + K +  G+  + A + T ++A  +      A  H  TF  NP+ C ++   +
Sbjct: 294 VSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASV 353

Query: 170 DVIKDEELQYNCKQVSAQIIGYL 192
           +++  ++ +    +++A +   L
Sbjct: 354 ELLLGQDWRTRITELAAGLTAGL 376

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score =  116 bits (291), Expect = 2e-30
 Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 9/140 (6%)

Query: 57  AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
            ALI E +  G  G+      F R      ++     I DEV TGF R G      E+ G
Sbjct: 596 GALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV-ETTTELLG 654

Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVL-----TKA-AHFNTFGGNPVGCVIASTV 168
             PDI   AK +  G  P+   + T  +          KA  H +++  + +GC  A+  
Sbjct: 655 CKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKA 714

Query: 169 LDVIKDEELQYNCKQVSAQI 188
           +   KD E  +N       +
Sbjct: 715 IQWFKDPETNHNITSQGKTL 734

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 7/126 (5%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA IAE +    GV      FLR   EL +    LFI DEV +GF R G++     +  V
Sbjct: 203 AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGM-QALLDV 260

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFN-----TFGGNPVGCVIASTVLDV 171
            PD+  +AK  A G P G +    ++  VL++ +        TF GNP+    A   +D 
Sbjct: 261 QPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDT 320

Query: 172 IKDEEL 177
           I ++++
Sbjct: 321 ILEDDV 326

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434

 Score = 56.4 bits (137), Expect = 7e-10
 Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A +I E +   +GV    R FL     L + +  L I DEV TGF R G          +
Sbjct: 205 AGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGA-QGYFNI 262

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDV 171
             DI+ + K I  GFP+GAV  + E+  +LT       A   TF  +P+        L  
Sbjct: 263 EGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNA--GTFNAHPITMAAGLATLKA 320

Query: 172 IKDEEL 177
           +++E +
Sbjct: 321 LEEEPV 326

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434

 Score = 56.0 bits (136), Expect = 9e-10
 Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA++ E I G  G+ E    FL +  EL+     L I DEV T F R        ++ GV
Sbjct: 204 AAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGA-QDLLGV 261

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDV 171
           +PD+  + K I  G P+GA     EI + +        A   T  GNP         L+V
Sbjct: 262 TPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQA--GTMAGNPASMASGIACLEV 319

Query: 172 IKDEEL 177
           ++ E L
Sbjct: 320 LQQEGL 325

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427

 Score = 56.0 bits (136), Expect = 9e-10
 Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A +I E I G SG       FL    E+   ++ L + DEV TGF R        E  GV
Sbjct: 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGV-QEKFGV 258

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDV 171
           +PD+ T+ K I  G P+GA     EI Q++  A     A   T  GNP+        L++
Sbjct: 259 TPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQA--GTLSGNPLAMTAGIKTLEL 316

Query: 172 IKDEEL 177
           ++    
Sbjct: 317 LRQPGT 322

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429

 Score = 56.0 bits (136), Expect = 9e-10
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A +I E + G  GV      FL    E+ + N  L I DEV TGF R   N      +GV
Sbjct: 202 ACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCG-QGYYGV 259

Query: 117 SPDIVTMAKGIANGFPMGA 135
           +PD+  + K I  G P+GA
Sbjct: 260 TPDLTCLGKVIGGGLPVGA 278

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A +I E + G          FL     L      L I DEV TGF R        + + V
Sbjct: 202 ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGA-QDYYHV 259

Query: 117 SPDIVTMAKGIANGFPMGA 135
            PD+  + K I  G P+GA
Sbjct: 260 IPDLTCLGKIIGGGMPVGA 278

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 10/127 (7%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHG 115
           AA++ E + G  G     R FL            L I DEV T      G      EM G
Sbjct: 235 AAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGG----AQEMLG 290

Query: 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTVLD 170
           +S D+ T+ K I  G   GA     ++ +    A      H  TF  N +        L 
Sbjct: 291 ISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALT 350

Query: 171 VIKDEEL 177
            I   + 
Sbjct: 351 QIYTRQA 357

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424

 Score = 52.1 bits (126), Expect = 2e-08
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 57  AALIAESIQG----VSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE 112
           AA+I E + G    +   ++F +  L  A         L I+DEV TGF R        E
Sbjct: 201 AAIIFEPVVGNAGVLVPTEDFLK-ALHEAKA----YGVLLIADEVMTGF-RLAFGGA-TE 253

Query: 113 MHGVSPDIVTMAKGIANGFPMGA 135
           + G+ PD+VT+ K +  G P  A
Sbjct: 254 LLGLKPDLVTLGKILGGGLPAAA 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	100.0
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	100.0
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	100.0
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	100.0
3hmu_A	472	Aminotransferase, class III; structural genomics,	100.0
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	100.0
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.98
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.98
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.97
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.97
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.97
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.97
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.96
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.96
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.96
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.96
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.96
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.96
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.96
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.96
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.93
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.96
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.96
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.96
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.95
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.95
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.95
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.95
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.95
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.94
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.94
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.93
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.92
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.91
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.91
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.89
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.87
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.8
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.8
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.79
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.79
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.78
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.78
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.78
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.77
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.77
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.77
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.77
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.77
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.76
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.76
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.76
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.76
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.76
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.75
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.75
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.75
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.75
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.75
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.75
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.74
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.74
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.74
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.74
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.73
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.73
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.73
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.73
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.73
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.72
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.72
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.72
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.71
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.71
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.7
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.7
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.7
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.7
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.7
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.7
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.69
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.69
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.69
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.69
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.69
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.68
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.68
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.67
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.67
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.67
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.67
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.49
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.67
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.67
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.66
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.66
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.65
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.65
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.64
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.63
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.63
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.62
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.62
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.62
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.62
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.61
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.6
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.6
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.6
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.6
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.59
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.59
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.59
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.58
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.58
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.57
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.57
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.56
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.56
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.56
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.55
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.55
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.55
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.55
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.54
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.54
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.54
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.54
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.54
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.54
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.53
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.53
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.53
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.53
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.53
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.52
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.52
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.51
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.51
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.51
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.51
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.5
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.49
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.49
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.49
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.48
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.48
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.48
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.48
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.47
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.47
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.47
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.46
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.46
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.45
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.44
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.43
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.43
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.42
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.42
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.42
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.42
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.41
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.4
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.4
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.39
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.39
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.38
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.37
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.37
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.36
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.36
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.36
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.35
1svv_A	359	Threonine aldolase; structural genomics, structura	99.35
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.33
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.33
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.33
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.32
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.31
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.31
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.28
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.27
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.26
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.26
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.26
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.26
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.25
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.25
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.24
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.23
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.23
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.21
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.21
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.21
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.21
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.21
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.21
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.19
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.19
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.18
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.18
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.17
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.17
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.17
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.14
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.11
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.1
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.1
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.09
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.06
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.0
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	98.99
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	98.9
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	98.87
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	98.83
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	98.79
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	98.78
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	98.77
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	98.76
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	98.73
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.71
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	98.69
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	98.68
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	98.67
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	98.65
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	98.65
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	98.4
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	98.27
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	97.87
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	97.03
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	97.01
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	96.05

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=100.00  E-value=7e-40  Score=287.26  Aligned_cols=140  Identities=36%  Similarity=0.620  Sum_probs=135.3

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCce
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPM  133 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~  133 (195)
                      +++||||+|||||++|+++++++||++|+++|++||++||+|||++||||+|+ +|+++++|++|||+|+||+++||+|+
T Consensus       225 ~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~-~~a~e~~gv~PDivt~gK~lggg~P~  303 (456)
T 4atq_A          225 DQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE-WFAVDHEGVVPDIITMAKGIAGGLPL  303 (456)
T ss_dssp             GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTTCCCSEEEECGGGGTTSSC
T ss_pred             CceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc-cccccccCCCCchhhhhhcccCcCCc
Confidence            58999999999999999999999999999999999999999999999999998 88999999999999999999999999


Q ss_pred             EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++++++++.+....+++||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus       304 ~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~  364 (456)
T 4atq_A          304 SAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRE  364 (456)
T ss_dssp             EEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             eeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887899999999999999999999999999999999999999999875

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=100.00  E-value=5.4e-40  Score=289.11  Aligned_cols=160  Identities=30%  Similarity=0.516  Sum_probs=147.5

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      ++...+.+++++.+.+..+ +++||||+|||||.+|+++++++||++|+++|++||++||+|||++||||+|+ +|++++
T Consensus       216 ~~~~~~~~~l~~~i~~~~~-~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~-~fa~e~  293 (473)
T 4e3q_A          216 QFVARLARELEETIQREGA-DTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGN-TWGCVT  293 (473)
T ss_dssp             HHHHHHHHHHHHHHHHHCG-GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSS-SCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCC-CceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccc-hhHHHh
Confidence            4566778889998887755 58999999999999999999999999999999999999999999999999998 889999


Q ss_pred             cCCCcchhhhccccCCC-CceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322        114 HGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS  185 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~  185 (195)
                      +|++|||+|+||++++| +|+|++++++++++.+..       ..|++||++||++|+|++++|++++++++.+++++++
T Consensus       294 ~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g  373 (473)
T 4e3q_A          294 YDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLA  373 (473)
T ss_dssp             TTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHH
T ss_pred             cCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHH
Confidence            99999999999999988 799999999999987753       3488999999999999999999999999999999999


Q ss_pred             HHHHHHhhcC
Q psy13322        186 AQIIGYLRVV  195 (195)
Q Consensus       186 ~~l~~~L~~l  195 (195)
                      ++|+++|+++
T Consensus       374 ~~l~~~L~~l  383 (473)
T 4e3q_A          374 PRFEERLKHI  383 (473)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999753

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=100.00  E-value=1.2e-36  Score=266.37  Aligned_cols=151  Identities=21%  Similarity=0.199  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++.+++.|+++.  +++||||+|||+|++|+++++++||++|+++|++||++||+||||+  ||+|. +++++++|++|
T Consensus       206 d~~~l~~~l~~~~--~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t--GR~G~-~~a~e~~gv~P  280 (454)
T 4ao9_A          206 DAQTARAQIERHG--PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--SRLAP-HGLANKLGIRS  280 (454)
T ss_dssp             CHHHHHHHHHHTG--GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG--GGGST-TCHHHHHTCCC
T ss_pred             hHHHHHHHHhhcC--CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc--CCCcc-ccchhccCCCC
Confidence            3788999998875  5899999999999999999999999999999999999999999999  59998 77889999999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhcc----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ||+|+||++|+|+|+|++++++++++.+...    .+++||++||++|+|++++|+.++++++.+++++++++|+++|++
T Consensus       281 Di~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~  360 (454)
T 4ao9_A          281 DLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNA  360 (454)
T ss_dssp             SEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988653    378899999999999999999999999999999999999999975

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=5e-35  Score=257.17  Aligned_cols=160  Identities=26%  Similarity=0.479  Sum_probs=145.8

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc-
Q psy13322         34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE-  112 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~-  112 (195)
                      ++...++++|+++|++..+ +++++||+||+++++|+++++++||++|+++|++||++||+||||+||||+|+ +++++ 
T Consensus       201 ~~~~~~~~~le~~i~~~~~-~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~-~~~~~~  278 (476)
T 3i5t_A          201 AFLDDLVQEFEDRIESLGP-DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE-WFASEK  278 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHCG-GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCC-CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC-ceeeec
Confidence            4456668999999987543 48999999999999999999999999999999999999999999999999997 77888 


Q ss_pred             ccCCCcchhhhccccCCC-CceEEEEecHHHHHHhhcc-------ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHH
Q psy13322        113 MHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQV  184 (195)
Q Consensus       113 ~~~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~-------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~  184 (195)
                      ++++.||++|+||++++| +|+|++++++++++.+...       .+++||++||++|+|++++|+.++++++.++++++
T Consensus       279 ~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~  358 (476)
T 3i5t_A          279 VFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREM  358 (476)
T ss_dssp             TTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             ccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            899999999999999999 8999999999999998763       57789999999999999999999878899999999


Q ss_pred             HHHHHHHhhcC
Q psy13322        185 SAQIIGYLRVV  195 (195)
Q Consensus       185 ~~~l~~~L~~l  195 (195)
                      ++++++.|+++
T Consensus       359 ~~~l~~~L~~l  369 (476)
T 3i5t_A          359 ADYFAAALASL  369 (476)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHH
Confidence            99999998753

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=100.00  E-value=2e-33  Score=246.84  Aligned_cols=159  Identities=30%  Similarity=0.481  Sum_probs=143.5

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      +....++++|+++|++..+ +++++||+||++|++|.++++++||++|+++|++||++||+||||+||||+|+ ++++++
T Consensus       203 ~~~~~~~~~le~~i~~~~~-~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~a~~~  280 (472)
T 3hmu_A          203 EFGLARARELEEAILELGE-NRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN-WFGTQT  280 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHCG-GGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCC-CCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc-cchhHH
Confidence            3455668999999986644 48999999999999999999999999999999999999999999999999997 778888


Q ss_pred             cCCCcchhhhccccCCC-CceEEEEecHHHHHHhhcc--ccccCCCchHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHH
Q psy13322        114 HGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA--AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK-QVSAQII  189 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~--~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~-~~~~~l~  189 (195)
                      +++.||++||||++++| ||+|++++++++++.+...  .+++||++||++|+|++++|+.++++++.++++ +++++++
T Consensus       281 ~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~  360 (472)
T 3hmu_A          281 MGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLK  360 (472)
T ss_dssp             HTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHH
T ss_pred             hCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            89999999999999976 8999999999999998422  478899999999999999999987788999999 9999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       361 ~~L~~  365 (472)
T 3hmu_A          361 EKWEA  365 (472)
T ss_dssp             HHHHG
T ss_pred             HHHHH
Confidence            99875

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=100.00  E-value=8.2e-33  Score=240.37  Aligned_cols=155  Identities=34%  Similarity=0.598  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         37 NKFYEQLVNAFQYNVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ..++++|++.|++..+ +++++||+||+ ++ +|.++++++||++|+++|++||++||+||||+||||+|. +++++.++
T Consensus       198 ~~~~~~le~~l~~~~~-~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~-~~~~~~~~  274 (452)
T 3n5m_A          198 VECVKEVDRVMTWELS-ETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK-AFGFMNYD  274 (452)
T ss_dssp             CHHHHHHHHHHHHHCG-GGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTT
T ss_pred             HHHHHHHHHHHHhcCC-CCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc-cchhhhcC
Confidence            3568999999874322 48999999999 89 999999999999999999999999999999999999997 67788889


Q ss_pred             CCcchhhhccccCCC-CceEEEEecHHHHHHhhc------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy13322        116 VSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTK------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI  188 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l  188 (195)
                      +.||++||||++++| +|+|++++++++++.+..      ..+.+|+++||++++|++++|+.++++++.++++++++++
T Consensus       275 ~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l  354 (452)
T 3n5m_A          275 VKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLL  354 (452)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             CCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            999999999999999 999999999999998843      2367899999999999999999987788999999999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      ++.|++
T Consensus       355 ~~~L~~  360 (452)
T 3n5m_A          355 LEQLKE  360 (452)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=100.00  E-value=1.3e-32  Score=240.06  Aligned_cols=158  Identities=28%  Similarity=0.466  Sum_probs=141.6

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      +....++++|++++++..+ +++++||+||+++++|.++++++||++|+++|++||++||+||||+||||+|+ ++++++
T Consensus       201 ~~~~~~~~~le~~i~~~~~-~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~-~~~~~~  278 (460)
T 3gju_A          201 QFSQHCADKLEEMILAEGP-ETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT-MFGSDH  278 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHCG-GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCC-CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-cchHhh
Confidence            3445668999999986543 48999999999999999999999999999999999999999999999999997 677788


Q ss_pred             cCCCcchhhhccccCCC-CceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322        114 HGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS  185 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~  185 (195)
                      +++.||++||||++++| ||+|++++++++++.+..       ..+.+||++||++++|++++|+.++++++.+++++++
T Consensus       279 ~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~  358 (460)
T 3gju_A          279 YGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETG  358 (460)
T ss_dssp             HTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             cCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            89999999999999988 799999999999998853       3578899999999999999999987788899999999


Q ss_pred             HHHHHHhh
Q psy13322        186 AQIIGYLR  193 (195)
Q Consensus       186 ~~l~~~L~  193 (195)
                      +++++.|+
T Consensus       359 ~~~~~~l~  366 (460)
T 3gju_A          359 AYFRAELA  366 (460)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888884

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=100.00  E-value=2.3e-32  Score=237.60  Aligned_cols=158  Identities=30%  Similarity=0.491  Sum_probs=142.9

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccC-CCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc
Q psy13322         34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQ-GVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE  112 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~-s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~  112 (195)
                      ++...++++|+++|++..  +++++||+||++ +++|.++++++||++|+++|++||++||+||||+|||++|. +++++
T Consensus       191 ~~~~~d~~~le~~l~~~~--~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~-~~a~~  267 (448)
T 3dod_A          191 ECRDQCLRELAQLLEEHH--EEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK-MFACE  267 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGG
T ss_pred             hhhHHHHHHHHHHHHhCC--CCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-hhhhh
Confidence            345567899999998542  489999999999 99999999999999999999999999999999999999997 66778


Q ss_pred             ccCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHH
Q psy13322        113 MHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQV  184 (195)
Q Consensus       113 ~~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~  184 (195)
                      ++++.||++||||++++|| |+|++++++++++.+..       ..+.+|+++||++++|++++|+.++++++.++++++
T Consensus       268 ~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~  347 (448)
T 3dod_A          268 HENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEK  347 (448)
T ss_dssp             GGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             hcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            8899999999999999995 99999999999999876       457889999999999999999998778899999999


Q ss_pred             HHHHHHHhhc
Q psy13322        185 SAQIIGYLRV  194 (195)
Q Consensus       185 ~~~l~~~L~~  194 (195)
                      ++++++.|++
T Consensus       348 ~~~~~~~l~~  357 (448)
T 3dod_A          348 SKKLHFLLQD  357 (448)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988864

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=100.00  E-value=3.5e-34  Score=266.52  Aligned_cols=152  Identities=24%  Similarity=0.350  Sum_probs=131.6

Q ss_pred             hhHHHHHHHHHHHHHhc----CCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCc
Q psy13322         34 EASNKFYEQLVNAFQYN----VPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY  108 (195)
Q Consensus        34 ~~~~~~~~~l~~~l~~~----~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~  108 (195)
                      +....|++.|++.|++.    .+ +++|+||+||| ||++|+++++++||++|+++|++||++||+||||+||||+|+ +
T Consensus       570 ~~~~~~~~~le~~l~~~~~~~~~-~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~-~  647 (831)
T 4a0g_A          570 TLARIYSAYLSKHLQEHSGVRQS-AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV-E  647 (831)
T ss_dssp             HHHHHHHHHHHHHC----------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB-S
T ss_pred             hhhHHHHHHHHHHHHhhhhhcCC-CcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC-c
Confidence            34567889999988742    23 58999999997 999999999999999999999999999999999999999998 7


Q ss_pred             ccccccCCCcchhhhccccCCC-CceEEEEecHHHHHHhhcc------ccccCCCchHHHHHHHHHHHHhhcchhHHHHH
Q psy13322        109 WGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNC  181 (195)
Q Consensus       109 ~~~~~~~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l  181 (195)
                      |+++++|+.|||+|+||++++| +|+|++++++++++.+...      .+++||++||++|+|++++|+.++++++.+++
T Consensus       648 fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~  727 (831)
T 4a0g_A          648 TTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNI  727 (831)
T ss_dssp             STHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTB
T ss_pred             hhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHH
Confidence            7889999999999999999998 6999999999999988653      37899999999999999999999776666666


Q ss_pred             HHHHHH
Q psy13322        182 KQVSAQ  187 (195)
Q Consensus       182 ~~~~~~  187 (195)
                      ++++++
T Consensus       728 ~~~~~~  733 (831)
T 4a0g_A          728 TSQGKT  733 (831)
T ss_dssp             CTTSSB
T ss_pred             HHHHHH
Confidence            555444

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.98  E-value=1.6e-32  Score=239.30  Aligned_cols=158  Identities=31%  Similarity=0.497  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ...+++.+++.|++....+++++||+||+++++|.++++++||++|+++|++||++||+||||+|||++|. ++++++++
T Consensus       208 ~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~  286 (451)
T 3oks_A          208 GELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA-MFACEHEG  286 (451)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGT
T ss_pred             hHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc-chhhhhcC
Confidence            34567777777775432248999999999999999999999999999999999999999999999999997 67788889


Q ss_pred             CCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.||+++|||++++|||+|++++++++++.+....+.+|+++||++++|++++|+.++++++.++++++++++++.|++
T Consensus       287 ~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  365 (451)
T 3oks_A          287 IDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGR  365 (451)
T ss_dssp             CCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeeehhhhhCCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988777788999999999999999999987778999999999999998875

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.98  E-value=5.4e-32  Score=236.19  Aligned_cols=140  Identities=39%  Similarity=0.597  Sum_probs=131.5

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCce
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPM  133 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~  133 (195)
                      +++++||+||+++++|.++++++||++|+++|++||++||+||||+||||+|. +++++++++.||+++|||++++|||+
T Consensus       224 ~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~-~~a~~~~~~~pdi~t~sK~~~~G~~~  302 (453)
T 4ffc_A          224 QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA-WFASEHEGIVPDIVTMAKGIAGGMPL  302 (453)
T ss_dssp             GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHTCCCSEEEECGGGGTTSSC
T ss_pred             CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc-cchhhhcCCCcchHhhhhhhcCCcCe
Confidence            48999999999999999999999999999999999999999999999999997 67788889999999999999999999


Q ss_pred             EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++++++++.+....+.+||++||++++|++++|+.++++++.++++++++++++.|++
T Consensus       303 G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~  363 (453)
T 4ffc_A          303 SAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSA  363 (453)
T ss_dssp             EEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999988877788999999999999999999987788999999999999998864

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.97  E-value=3.5e-31  Score=231.61  Aligned_cols=155  Identities=24%  Similarity=0.475  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         37 NKFYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ..++++|+++|+++.  +++++||+|| +++++|.+++++++|++|+++|++||++||+||||+||||+|. ++++++++
T Consensus       217 ~~d~~~le~~l~~~~--~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~-~~a~~~~~  293 (457)
T 3tfu_A          217 PAYSAAFEAQLAQHA--GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA-LFAADHAG  293 (457)
T ss_dssp             HHHHHHHHHHHHHHG--GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHT
T ss_pred             HHHHHHHHHHHHhCC--CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc-hhHhHhcC
Confidence            357899999998753  4899999999 9999999999999999999999999999999999999999997 67788889


Q ss_pred             CCcchhhhccccCCC-CceEEEEecHHHHHHhh---cc--ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322        116 VSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLT---KA--AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII  189 (195)
Q Consensus       116 ~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~---~~--~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~  189 (195)
                      +.||++||||++++| +|+|++++++++++.+.   ..  .+++||++||++|+|++++|+.++++++.+++++++++++
T Consensus       294 ~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~  373 (457)
T 3tfu_A          294 VSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLT  373 (457)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            999999999999988 59999999999999985   22  4778999999999999999999887889999999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       374 ~~L~~  378 (457)
T 3tfu_A          374 AGLDT  378 (457)
T ss_dssp             HHHGG
T ss_pred             HHHHH
Confidence            99875

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.97  E-value=1.6e-31  Score=233.14  Aligned_cols=156  Identities=28%  Similarity=0.450  Sum_probs=140.5

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ....++++|++++.+..+ +++++||+||+++++|.++++++||++|+++|++||++||+||||+||||+|+ +++++++
T Consensus       200 ~~~~~~~~le~~i~~~~~-~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~~~  277 (459)
T 4a6r_A          200 FGVVAARWLEEKILEIGA-DKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE-WFGHQHF  277 (459)
T ss_dssp             HHHHHHHHHHHHHHHHCG-GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC-CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-cchHhhc
Confidence            344558899999986543 48999999999999999999999999999999999999999999999999997 6777888


Q ss_pred             CCCcchhhhccccCCC-CceEEEEecHHHHHHhh---ccccccCCCchHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHH
Q psy13322        115 GVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLT---KAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK-QVSAQII  189 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~---~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~-~~~~~l~  189 (195)
                      ++.||++||||++++| +|+|++++++++++.+.   ...+.+||++||++++|++++|+.++++++.++++ +++++++
T Consensus       278 ~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~  357 (459)
T 4a6r_A          278 GFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQ  357 (459)
T ss_dssp             TCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHH
T ss_pred             CCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            9999999999999976 89999999999999887   44477899999999999999999987788999999 9999998


Q ss_pred             HHh
Q psy13322        190 GYL  192 (195)
Q Consensus       190 ~~L  192 (195)
                      +.|
T Consensus       358 ~~l  360 (459)
T 4a6r_A          358 KRW  360 (459)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            888

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.97  E-value=1.7e-30  Score=224.29  Aligned_cols=152  Identities=29%  Similarity=0.358  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|+++|+++.  +++++||+||+++++|.+.++++||++|+++|++||++||+||||+|| ++|. +++++++++.|
T Consensus       188 d~~~le~~l~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~-~~~~~~~~~~~  263 (434)
T 3l44_A          188 NVETLKEALDKWG--HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY-GGAQDLLGVTP  263 (434)
T ss_dssp             CHHHHHHHHHHHG--GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS-SCHHHHHTCCC
T ss_pred             cHHHHHHHHHhCC--CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc-cHHHHHcCCCC
Confidence            3788999888753  479999999999999999999999999999999999999999999999 9887 66678889999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhc---cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTK---AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~---~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++||++++|||+|++++++++++.+..   ..+..|+++||++++|++++|+.++++++.++++++++++++.|++
T Consensus       264 di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  342 (434)
T 3l44_A          264 DLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILE  342 (434)
T ss_dssp             SEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             CeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988865   2367899999999999999999987788999999999999998875

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.97  E-value=6.7e-30  Score=220.30  Aligned_cols=156  Identities=26%  Similarity=0.414  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ..++++|++.+++..+ +++++|++||+++++|.++++++++++|+++|++||++||+||||+|||++|. +++++.+++
T Consensus       186 ~~d~~~le~~l~~~~~-~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~-~~~~~~~~~  263 (433)
T 1zod_A          186 LAELDYAFDLIDRQSS-GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT-MFACQRDGV  263 (433)
T ss_dssp             HHHHHHHHHHHHHHCC-SCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHTC
T ss_pred             HHHHHHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch-HhHHhhcCC
Confidence            3468899999886533 37899999999999999999999999999999999999999999999999986 556677789


Q ss_pred             CcchhhhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .||++++||++++|+|+|++++++++++.+....  +.+|+++|+++++|++++|+.++++++.++++++++++++.|++
T Consensus       264 ~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~  343 (433)
T 1zod_A          264 TPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLD  343 (433)
T ss_dssp             CCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998887643  44889999999999999999887778899999999999998865

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.96  E-value=1.1e-29  Score=220.84  Aligned_cols=151  Identities=34%  Similarity=0.564  Sum_probs=137.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.|+.    +++++|++||+++++|.++++++++++|+++|++||++||+||||+|||++|. +++++.+++.||
T Consensus       212 ~~~le~~l~~----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~-~~~~~~~~~~~D  286 (439)
T 2oat_A          212 LPALERALQD----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR-WLAVDYENVRPD  286 (439)
T ss_dssp             HHHHHHHTTS----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGTCCCS
T ss_pred             HHHHHHHhCC----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc-chhHHHhCCCCc
Confidence            6788888852    37899999999999999999999999999999999999999999999999997 667788899999


Q ss_pred             hhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        120 IVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       120 i~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      ++++||++++| +|+|++++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++|++.|+++
T Consensus       287 i~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l  363 (439)
T 2oat_A          287 IVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL  363 (439)
T ss_dssp             EEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTS
T ss_pred             EEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            99999999999 89999999999988887666788999999999999999999877789999999999999999763

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.96  E-value=1.4e-29  Score=218.27  Aligned_cols=157  Identities=27%  Similarity=0.453  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEEcccCC-CCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         36 SNKFYEQLVNAFQYNVPITGAAALIAESIQG-VSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s-~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ...++++|+++|++..+ +++++|++||++| ++|.+++++++|++|+++|++||++||+||||+|||++|. +++++++
T Consensus       172 ~~~~~~~le~~l~~~~~-~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~-~~~~~~~  249 (430)
T 3i4j_A          172 GAEDAEGLRALLEREGP-ETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS-PLALSRW  249 (430)
T ss_dssp             HHHHHTHHHHHHHHHCG-GGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGT
T ss_pred             hhHHHHHHHHHHHhcCC-CCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhhhh
Confidence            34567899999987543 4789999999999 9999999999999999999999999999999999999997 6778888


Q ss_pred             -CCCcchhhhccccCCC-CceEEEEecHHHHHHhhcc----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy13322        115 -GVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI  188 (195)
Q Consensus       115 -~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l  188 (195)
                       ++.||++||||++++| ||+|++++++++++.+...    .+.+|+++||++++|++++|+.++++++.++++++++++
T Consensus       250 ~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~  329 (430)
T 3i4j_A          250 SGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQL  329 (430)
T ss_dssp             TTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             cCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             9999999999999999 9999999999999998764    577899999999999999999887788899999999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      ++.|++
T Consensus       330 ~~~l~~  335 (430)
T 3i4j_A          330 LAGLQA  335 (430)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988864

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.96  E-value=1.2e-29  Score=220.11  Aligned_cols=151  Identities=32%  Similarity=0.563  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|+++|+.    +++++||+||+++++|.+++++++|++|+++|++||++||+||||+|||++|. +++++.+++.|
T Consensus       200 d~~~le~~l~~----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~-~~~~~~~~~~~  274 (433)
T 1z7d_A          200 DLEALEEELKD----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYNVKP  274 (433)
T ss_dssp             CHHHHHHHHTS----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGTCCC
T ss_pred             CHHHHHHHhCC----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc-chhhHhcCCCC
Confidence            37888888861    47899999999999999999999999999999999999999999999999997 66778889999


Q ss_pred             chhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++||++++| +|+|++++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++|++.|++
T Consensus       275 di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  351 (433)
T 1z7d_A          275 DVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKR  351 (433)
T ss_dssp             SEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999 8999999999998887766678899999999999999999987778999999999999999875

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.96  E-value=1e-29  Score=219.25  Aligned_cols=152  Identities=24%  Similarity=0.286  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|+++++++.  +++++|++||+++++|.+.++++||++|+++|++||++||+||||+|| |+|. .+..+.+++.|
T Consensus       186 d~~~le~~l~~~~--~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~-~~~~~~~~~~p  261 (429)
T 4e77_A          186 DLASVRQAFEQYP--QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL-AGAQDYYHVIP  261 (429)
T ss_dssp             CHHHHHHHHHHST--TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT-TCHHHHTTCCC
T ss_pred             CHHHHHHHHHhcC--CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc-chHHHhcCCCC
Confidence            3788999998753  479999999999999999999999999999999999999999999999 8887 66778889999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++||++++|+|+|++++++++++.+...   .+.+||++||+++++++++|+.++++++.++++++++++++.|++
T Consensus       262 di~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  340 (429)
T 4e77_A          262 DLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRH  340 (429)
T ss_dssp             SEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             CeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888653   367889999999999999999987788999999999999998864

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.96  E-value=1.2e-29  Score=219.09  Aligned_cols=151  Identities=28%  Similarity=0.358  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|+++++++.  +++++||+||+++++|.+.++++||++|+++|++||++||+||||+|| ++|. +++.+.+++.|
T Consensus       186 d~~~le~~l~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~-~~~~~~~~~~~  261 (429)
T 3k28_A          186 DLESVKYAFEQFG--DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAY-NCGQGYYGVTP  261 (429)
T ss_dssp             CHHHHHHHHHHHG--GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSST-THHHHHHTCCC
T ss_pred             CHHHHHHHHHhCC--CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc-chHHHHhCCCC
Confidence            3788999888653  479999999999999999999999999999999999999999999999 9886 66677889999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++||++++|+|+|++++++++++.+...   .+.+|+++||+++++++++|+.++ +++.++++++++++++.|++
T Consensus       262 di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~  339 (429)
T 3k28_A          262 DLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRK  339 (429)
T ss_dssp             SEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887653   267789999999999999999887 78999999999999999875

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.96  E-value=3.3e-29  Score=215.85  Aligned_cols=152  Identities=29%  Similarity=0.347  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|+++++++.  +++++|++||+++++|.+.++++||++|+++|++||++||+||||+|| ++|. .+..+.+++.|
T Consensus       185 d~~~le~~l~~~~--~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~-~~~~~~~~~~~  260 (427)
T 3fq8_A          185 DLEAVKALFAENP--GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAY-GGVQEKFGVTP  260 (427)
T ss_dssp             CHHHHHHHHHHST--TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT-THHHHHTTCCC
T ss_pred             CHHHHHHHHHhCC--CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc-chhhHhcCCCC
Confidence            4789999998753  489999999999999999999999999999999999999999999999 8886 56667889999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++||++++|+|+|++++++++++.+...   .+..|+++||+++++++++|+.++++++.++++++++++++.|++
T Consensus       261 di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~  339 (427)
T 3fq8_A          261 DLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLA  339 (427)
T ss_dssp             SEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888653   367888999999999999999987788999999999999998864

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.96  E-value=1.1e-28  Score=213.91  Aligned_cols=158  Identities=32%  Similarity=0.549  Sum_probs=139.9

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      +...++++|++.|+++.+ +++++|++||+++++|.++++++++++|+++|++||++||+||||+|||++|. .+.++.+
T Consensus       200 ~~~~~~~~le~~l~~~~~-~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~-~~~~~~~  277 (449)
T 3a8u_X          200 GGIALADELLKLIELHDA-SNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS-MFGADSF  277 (449)
T ss_dssp             SHHHHHHHHHHHHHHHCG-GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCC-CCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc-chhhhhc
Confidence            345668999999986532 37899999999999999999999999999999999999999999999999986 5566777


Q ss_pred             CCCcchhhhccccCCC-CceEEEEecHHHHHHhhcc---------ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA---------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQV  184 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~---------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~  184 (195)
                      ++.||++++||++++| +|+|++++++++++.+...         .+.+|+++|++++++++++|+.++++++.++++++
T Consensus       278 ~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~  357 (449)
T 3a8u_X          278 GVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEV  357 (449)
T ss_dssp             TCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            8999999999999988 8999999999999888654         35678899999999999999988777899999999


Q ss_pred             HHHHHHHhhc
Q psy13322        185 SAQIIGYLRV  194 (195)
Q Consensus       185 ~~~l~~~L~~  194 (195)
                      ++++++.|++
T Consensus       358 ~~~l~~~L~~  367 (449)
T 3a8u_X          358 APHFEKALHG  367 (449)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.96  E-value=5e-29  Score=215.30  Aligned_cols=152  Identities=26%  Similarity=0.342  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++.|++.|+++.  +++++||+||+++++|.++++++|+++|+++|++||++||+||||+|| ++|. .+.++.+++.|
T Consensus       189 d~~~le~~l~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~~~~  264 (434)
T 2epj_A          189 DVEALERVFAEYG--DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGL-EGAQGYFNIEG  264 (434)
T ss_dssp             CHHHHHHHHHHHG--GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSST-THHHHHHTCCC
T ss_pred             CHHHHHHHHHhCC--CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCc-chhhHHhCCCC
Confidence            3788998888652  379999999999999999999999999999999999999999999999 7776 55667789999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++||++++|+|+|++++++++++.+...   .+.+||++||+++++++++|+.++++++.+++++++++|++.|++
T Consensus       265 di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~  343 (434)
T 2epj_A          265 DIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASE  343 (434)
T ss_dssp             SEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             CeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998887652   256788999999999999999887778999999999999999875

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.93  E-value=5.2e-31  Score=231.49  Aligned_cols=153  Identities=23%  Similarity=0.251  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      .+++.|+++|+++.  +++++||+||+++++|.++++++||++|+++|++||++||+||||+ + |+|. +++++++++.
T Consensus       218 ~d~~~l~~~l~~~~--~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~-~~a~~~~gv~  292 (465)
T 2yky_A          218 NDVEGTADLLKRHG--HDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSG-GGAQEMLGIS  292 (465)
Confidence            34788888887653  4899999999999999999999999999999999999999999999 6 8887 6678888999


Q ss_pred             cchhhhccccCCCCceEEEEecHHHHHHhhc-----cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322        118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTK-----AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       118 pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~-----~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L  192 (195)
                      ||++||||++++|||+|++++++++++.+..     ..+.+||++||++|+|++++|+.++++++.+++++++++|+++|
T Consensus       293 pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L  372 (465)
T 2yky_A          293 ADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANL  372 (465)
Confidence            9999999999999999999999999998876     23678999999999999999999988889999999999999998


Q ss_pred             hcC
Q psy13322        193 RVV  195 (195)
Q Consensus       193 ~~l  195 (195)
                      +++
T Consensus       373 ~~~  375 (465)
T 2yky_A          373 NRI  375 (465)
Confidence            753

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.96  E-value=1.8e-28  Score=211.90  Aligned_cols=153  Identities=26%  Similarity=0.417  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|+++|++..+ +++++|++||+++++|.+.+++++|++|+++|++||++||+||||+|||++|. +++++.+++.|
T Consensus       186 d~~~le~~l~~~~~-~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~-~~~~~~~~~~~  263 (439)
T 3dxv_A          186 ILTLLTEKLAAVPA-GSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR-LHCFEHEGFVP  263 (439)
T ss_dssp             HHHHHHHHHHTSCT-TCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS-SSGGGGTTCCC
T ss_pred             HHHHHHHHHHhcCC-CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhHHHhcCCCC
Confidence            68999999953322 48999999999999999999999999999999999999999999999999997 66778889999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++||++++|||+|++++++++++.+....+.+|+ +||+++++++++|+.++++++.++++++++++++.|++
T Consensus       264 di~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~  338 (439)
T 3dxv_A          264 DILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSE  338 (439)
T ss_dssp             SEEEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988776678889 99999999999999887788899999999999998864

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.96  E-value=1.2e-28  Score=212.35  Aligned_cols=151  Identities=27%  Similarity=0.342  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|++.+++..  +++++||+||+++++|.++++++|+++|+++ ++||++||+||||+|| ++|. .++++.+++.|
T Consensus       185 d~~~le~~l~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~~~~  259 (424)
T 2e7u_A          185 DPEGLREVLKRRG--EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAF-GGATELLGLKP  259 (424)
T ss_dssp             CHHHHHHHHHHHG--GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSST-THHHHHHTCCC
T ss_pred             CHHHHHHHHHhCC--CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccch-hHHHHHhCCCc
Confidence            3688888887642  3789999999999999999999999999999 9999999999999999 7886 55667789999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++||++++|+|+|++++++++++.+...   .+.+|+++||+++++++++|+.+++ +++.++++++++++++.|++
T Consensus       260 di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~  339 (424)
T 2e7u_A          260 DLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKE  339 (424)
T ss_dssp             SEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888652   2567889999999999999999877 88999999999999999875

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.96  E-value=2.4e-28  Score=208.10  Aligned_cols=149  Identities=28%  Similarity=0.531  Sum_probs=135.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     +++++|++||+++++|.+.++++++++|+++|++||++||+||||+|||++|. +++.+.+++.||
T Consensus       169 ~~~l~~~l~-----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~-~~~~~~~~~~~d  242 (395)
T 3nx3_A          169 ISSVEKLVN-----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK-FFAYEHAQILPD  242 (395)
T ss_dssp             HHHHHTTCC-----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTCCCS
T ss_pred             HHHHHHhcc-----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc-chhHHhcCCCCC
Confidence            677777664     47899999999999999999999999999999999999999999999999997 667788899999


Q ss_pred             hhhhccccCCCCceEEEEecHHH-HHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEI-AQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i-~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++||++++|+|+|++++++++ ++.+....+..|+++||+++++++++|+.++++++.++++++++++++.|++
T Consensus       243 ~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~  318 (395)
T 3nx3_A          243 IMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDE  318 (395)
T ss_dssp             EEEECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccccCCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998 8888776678899999999999999999887778889999999999888864

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.95  E-value=2.8e-28  Score=210.46  Aligned_cols=149  Identities=34%  Similarity=0.606  Sum_probs=131.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     +++++|++||+++++|.++++.+++++|+++|++||++||+||+|+|||++|. +++++.+++.||
T Consensus       191 ~~~le~~i~-----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~-~~~~~~~~~~~d  264 (420)
T 2pb2_A          191 LHAVKAVMD-----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYGVTPD  264 (420)
T ss_dssp             HHHHHHHCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSHHHHHTCCCS
T ss_pred             HHHHHHHhc-----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc-HHHHHhcCCCCC
Confidence            677877765     37899999999999998999999999999999999999999999999999997 566677789999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++|||++++|+|+|++++++++++.+....+..|+++||+++++++++|+.++++++.+++++++++|.+.|++
T Consensus       265 iit~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~  339 (420)
T 2pb2_A          265 ILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQA  339 (420)
T ss_dssp             EEEECGGGGTTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEecccccCCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988877655577889999999999999999987788999999999999998865

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.95  E-value=6.6e-28  Score=207.74  Aligned_cols=153  Identities=33%  Similarity=0.550  Sum_probs=129.9

Q ss_pred             HHHHHHH-HHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         38 KFYEQLV-NAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        38 ~~~~~l~-~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      .++++|+ +.++++...+++++|++||+++++|.+++++++|++|+++|++||++||+||||+|||++|. +++++.+++
T Consensus       194 ~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~-~~~~~~~~~  272 (419)
T 2eo5_A          194 RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK-LFAIENFNT  272 (419)
T ss_dssp             HHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTC
T ss_pred             HHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc-hhhHHhcCC
Confidence            3578898 88875421137899999999999999999999999999999999999999999999999986 556677789


Q ss_pred             CcchhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       117 ~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      .||+++|||++++| +|+|+++++++++ .+ ...+.+|+++|+++++|+.++|+.+++  +.+++++++++|.+.|+++
T Consensus       273 ~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~  348 (419)
T 2eo5_A          273 VPDVITLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL  348 (419)
T ss_dssp             CCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEecccccCCccceEEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence            99999999999999 9999999999887 66 434677899999999999999998754  8899999999999999763

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.95  E-value=1.6e-28  Score=213.36  Aligned_cols=151  Identities=28%  Similarity=0.425  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|++.|+++.  +++++|++||+++++|.++++++++++|+++|++||++||+||||+|| ++|. .++++.+++.|
T Consensus       187 d~~~le~~l~~~~--~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~~~~  262 (453)
T 2cy8_A          187 DIEGMREVFANHG--SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN-HGMQALLDVQP  262 (453)
T ss_dssp             CHHHHHHHHHHHG--GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT-THHHHHHTCCC
T ss_pred             CHHHHHHHHHhcC--CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc-hhhhHHhCCCC
Confidence            4788998888653  378999999999999999999999999999999999999999999999 8886 55667779999


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhc---c--ccccCCCchHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHh
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTK---A--AHFNTFGGNPVGCVIASTVLDV-IKDEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~---~--~~~~t~~~~p~~~~aa~aal~~-~~~~~~~~~l~~~~~~l~~~L  192 (195)
                      |++++||++++|+|+|++++++++++.+..   .  .+.+|+++||+++++++++|+. + .+++.++++++++++++.|
T Consensus       263 di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~~L  341 (453)
T 2cy8_A          263 DLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-EDDVCAKINDLGQFAREAM  341 (453)
T ss_dssp             SEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred             cEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988765   1  2567889999999999999998 7 6778999999999999988


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       342 ~~  343 (453)
T 2cy8_A          342 NH  343 (453)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.95  E-value=1.7e-27  Score=207.32  Aligned_cols=151  Identities=31%  Similarity=0.419  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ..++++|++.|+++.  +++++|++||+++++|.++++++||++|+++|++||++||+||||+|||++|. +++++.+++
T Consensus       215 ~~~~~~le~~i~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~~~  291 (449)
T 2cjg_A          215 AEALRQARAAFETRP--HDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT-AWAYQQLDV  291 (449)
T ss_dssp             HHHHHHHHHHHHHST--TTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSTHHHHTC
T ss_pred             HHHHHHHHHHHHhcC--CceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc-ceeecccCC
Confidence            456788999987653  48999999999999999999999999999999999999999999999999997 667777899


Q ss_pred             CcchhhhccccCCCCceEEEEecHHHHHHhh-----ccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy13322        117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLT-----KAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGY  191 (195)
Q Consensus       117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~-----~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~  191 (195)
                      .||++++||++    |+|++++++++++.+.     ...+.+|+++||++++|++++|+.++++++.+++++++++|++.
T Consensus       292 ~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~  367 (449)
T 2cjg_A          292 APDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRAR  367 (449)
T ss_dssp             CCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            99999999999    8999999999887532     23466889999999999999999887778999999999999999


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       368 L~~  370 (449)
T 2cjg_A          368 LDE  370 (449)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.95  E-value=5.4e-27  Score=202.07  Aligned_cols=153  Identities=29%  Similarity=0.506  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      ++++|++.++++.  +++++|++||+ ++++|.+++++++|++|+++|++||++||+||+|+|||++|. +++++..++.
T Consensus       190 d~~~l~~~l~~~~--~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~-~~~~~~~~~~  266 (429)
T 1s0a_A          190 DMVGFARLMAAHR--HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAEIA  266 (429)
T ss_dssp             GGHHHHHHHHHHT--TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTCC
T ss_pred             HHHHHHHHHHhCC--CCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch-HHHhhhcCCC
Confidence            4688888887652  37899999999 999999999999999999999999999999999999999986 5566777889


Q ss_pred             cchhhhccccCCC-CceEEEEecHHHHHHhhcc-----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy13322        118 PDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGY  191 (195)
Q Consensus       118 pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~-----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~  191 (195)
                      ||++++||+|++| +|+|++++++++++.+...     .+..|+++|+++++++.++|+.++++++.+++++++++|++.
T Consensus       267 ~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~  346 (429)
T 1s0a_A          267 PDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQ  346 (429)
T ss_dssp             CSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            9999999999999 8999999999998888753     245788999999999999999887778889999999999999


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       347 L~~  349 (429)
T 1s0a_A          347 LAP  349 (429)
T ss_dssp             HGG
T ss_pred             HHH
Confidence            875

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.94  E-value=3.1e-27  Score=207.40  Aligned_cols=151  Identities=26%  Similarity=0.427  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         37 NKFYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        37 ~~~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ..++++|+++|+++.+. .++++||+||+++++|+++++++||++|+++|++||++||+||||+|||++|. ++++++++
T Consensus       239 ~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~g  317 (472)
T 1ohv_A          239 ARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHWG  317 (472)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGC
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCC-chhccccC
Confidence            34789999999864210 27999999999999999999999999999999999999999999999999997 67888888


Q ss_pred             CC--cchhhhccc-cCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322        116 VS--PDIVTMAKG-IANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       116 ~~--pdi~~~sK~-l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L  192 (195)
                      +.  ||+++|||+ ++||+    ++ ++++. .+....+.+|+++||+++++++++|+.++++++.+++++++++|++.|
T Consensus       318 v~~~~Di~t~sK~~l~GG~----~~-~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L  391 (472)
T 1ohv_A          318 LDDPADVMTFSKKMMTGGF----FH-KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGL  391 (472)
T ss_dssp             CSSCCSEEEECGGGSSEEE----EE-CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEccccccCCc----cC-chhhc-ccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            86  999999999 67654    33 55552 223334678899999999999999999877789999999999999998


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       392 ~~  393 (472)
T 1ohv_A          392 LD  393 (472)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.94  E-value=4.7e-26  Score=195.25  Aligned_cols=156  Identities=31%  Similarity=0.518  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      -++++|++.+++....+++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||+++|. +++++..++.
T Consensus       182 ~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~  260 (426)
T 1sff_A          182 DAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMGVA  260 (426)
T ss_dssp             HHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTTSC
T ss_pred             HHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc-hhhhhhcCCC
Confidence            467889988875311137889999999999999999999999999999999999999999999999886 5566677888


Q ss_pred             cchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       118 pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ||+++|||++++|+|+|++++++++++.+....+..|++.|+++++++.++|+.++++++.++++++++++++.|++
T Consensus       261 ~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~  337 (426)
T 1sff_A          261 PDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLA  337 (426)
T ss_dssp             CSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998877654567788999999999999999887778889999999999998864

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.93  E-value=9.9e-26  Score=191.52  Aligned_cols=150  Identities=35%  Similarity=0.664  Sum_probs=136.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.++     +++++|+++++++++|.+.++.+++++|+++|++||++||+||+|+|||++|. .++...+++.||
T Consensus       172 ~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~d  245 (392)
T 3ruy_A          172 LEALKAAIT-----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK-VFACDWDNVTPD  245 (392)
T ss_dssp             HHHHHHHCC-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS-SSGGGGGTCCCS
T ss_pred             HHHHHHHhc-----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc-chhhhccCCCCC
Confidence            678888776     37899999999999999999999999999999999999999999999999997 566777789999


Q ss_pred             hhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        120 IVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       120 i~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      ++++||++++| +++|++++++++++.+....+..+++.|+++++++.++|+.++.+++.++++++++++.+.|+++
T Consensus       246 ~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  322 (392)
T 3ruy_A          246 MYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEI  322 (392)
T ss_dssp             EEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            99999999999 89999999999988887766788899999999999999998876889999999999999999753

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.92  E-value=2.8e-25  Score=189.14  Aligned_cols=149  Identities=38%  Similarity=0.602  Sum_probs=134.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     +++++|+++|+++++|...++.+++++|+++|++||++||+||+|+||+++|. .++...+++.||
T Consensus       173 ~~~l~~~l~-----~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~d  246 (406)
T 4adb_A          173 INSASALID-----DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPD  246 (406)
T ss_dssp             HHHHHTTCS-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSHHHHHTCCCS
T ss_pred             HHHHHHHhc-----CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hHHHHhcCCCCC
Confidence            567776654     47899999999999998888999999999999999999999999999999987 556677789999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++|||++++|+|+|++++++++++.+....+..+++.++++++++.++|+.++.+++.++++++++++.+.|++
T Consensus       247 ~~t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~  321 (406)
T 4adb_A          247 LLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNT  321 (406)
T ss_dssp             EEEECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988777678889999999999999999887788999999999999998874

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.91  E-value=2.2e-24  Score=183.71  Aligned_cols=148  Identities=34%  Similarity=0.577  Sum_probs=129.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.++     +++++|+++++++++|.++++.+++++|+++|++||++||+||+|+|+++.|. ++++..+++.||
T Consensus       173 ~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~d  246 (397)
T 2ord_A          173 VEDLRRKMS-----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK-LFAYQKYGVVPD  246 (397)
T ss_dssp             HHHHHHHCC-----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHHTCCCS
T ss_pred             HHHHHHHhh-----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc-chhhhhhCCCCC
Confidence            677777765     37899999999999998889999999999999999999999999999998886 555566677899


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++||++++|+++|+++++++++ .+....+..+++.|+++++++.++|+.++++++.++++++++++.+.|++
T Consensus       247 ~~s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~  320 (397)
T 2ord_A          247 VLTTAKGLGGGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQE  320 (397)
T ss_dssp             EEEECGGGGTTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeccccCCCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998876 55443466788899999999999999887678899999999999998864

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.91  E-value=7e-24  Score=180.26  Aligned_cols=150  Identities=35%  Similarity=0.580  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|++.++     +++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+||++.|. .+.+...++.+
T Consensus       174 d~~~l~~~i~-----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~-~~~~~~~~~~~  247 (395)
T 1vef_A          174 DVEALKRAVD-----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK-RFAFEHFGIVP  247 (395)
T ss_dssp             CHHHHHHHCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHTCCC
T ss_pred             cHHHHHHHhc-----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc-hhHhhhcCCCC
Confidence            3677777765     36889999999999999999999999999999999999999999999988886 44555667889


Q ss_pred             chhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++||++++|+++|++++++++++.+....+..+++.++++++++.++|+.++++++.++++++++++.+.|++
T Consensus       248 d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~  323 (395)
T 1vef_A          248 DILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRA  323 (395)
T ss_dssp             SEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEcccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988877664466788889999999999999886667889999999999999875

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.89  E-value=5.8e-23  Score=173.08  Aligned_cols=147  Identities=35%  Similarity=0.648  Sum_probs=127.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.++     +++++|+++|+++++|.+.++.+++++|.++|++||+++|+||+|++||+.|. .+....++..+|
T Consensus       162 ~~~l~~~l~-----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~d  235 (375)
T 2eh6_A          162 IDSVYKLLD-----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQHFNLKPD  235 (375)
T ss_dssp             HHHHHTTCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTCCCS
T ss_pred             HHHHHHHhc-----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-chhhhhcCCCCC
Confidence            566666554     37889999999999999989999999999999999999999999999988875 345566677899


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++||.+++|+++|++++++++++.+....+..+++.++++++++.++|+.++  ++.++++++++++.+.|++
T Consensus       236 ~~s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~  308 (375)
T 2eh6_A          236 VIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKE  308 (375)
T ss_dssp             EEEECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988877664466778889999999999998775  7788999999999998875

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.87  E-value=1.8e-21  Score=167.24  Aligned_cols=150  Identities=16%  Similarity=0.165  Sum_probs=123.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-----c
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-----H  114 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-----~  114 (195)
                      +++|++.+.+    .++++|+++++++++| +++++++|++|+++|++||++||+||+|++++++|..+..+..     .
T Consensus       183 ~~~le~~i~~----~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  257 (421)
T 3l8a_A          183 FEQLEKDIID----NNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYK  257 (421)
T ss_dssp             HHHHHHHHHH----TTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGG
T ss_pred             HHHHHHHhhc----cCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhc
Confidence            6888888874    3788999999999999 7788899999999999999999999999999998853333322     2


Q ss_pred             CCCcchhhhccccC-CCCceEEEEec-HHHHHHhhccc-cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIA-NGFPMGAVVTT-TEIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQII  189 (195)
Q Consensus       115 ~~~pdi~~~sK~l~-~G~~~g~v~~~-~~i~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~  189 (195)
                      +..+++.++||++| +|+|+|+++++ +++++.+.... ...++++|+++++++.++|+..++  +++.+++++++++|.
T Consensus       258 ~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~  337 (421)
T 3l8a_A          258 DFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVI  337 (421)
T ss_dssp             GTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            34456778899999 89999999998 88988887665 344558899999999999986543  577888999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       338 ~~L~~  342 (421)
T 3l8a_A          338 KELEA  342 (421)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88864

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.80  E-value=4.1e-19  Score=149.62  Aligned_cols=148  Identities=14%  Similarity=0.195  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|+++++++++|. +++.+++++|.++|++||++||+||+|+++++.+. ......++..++
T Consensus       144 ~~~l~~~l~-----~~~~~v~~~~~~nptG~-~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~i~  216 (375)
T 3op7_A          144 LEKLRQLIR-----PTTKMICINNANNPTGA-VMDRTYLEELVEIASEVGAYILSDEVYRSFSELDV-PSIIEVYDKGIA  216 (375)
T ss_dssp             HHHHHHHCC-----TTCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCC-CCHHHHCTTEEE
T ss_pred             HHHHHHhhc-----cCCeEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccccccccCC-CchhhhcCCEEE
Confidence            677887775     36778999999999996 55788899999999999999999999998876532 212244555677


Q ss_pred             hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.++||+++ +|+++|++++++++++.+.......+++.++++++++.++|+..++  ++.+++++++.+++.+.|++
T Consensus       217 ~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~  294 (375)
T 3op7_A          217 VNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEE  294 (375)
T ss_dssp             EEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            889999999 8999999999999999998776777788899999999999986543  45667778888888888764

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.80  E-value=3e-19  Score=153.28  Aligned_cols=149  Identities=13%  Similarity=0.052  Sum_probs=119.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc----cC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM----HG  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~----~~  115 (195)
                      ++.|++.+.     .++++|+++++++++|.+ ++++++++|+++|++||++||+||+|+++++.|..+..+..    .+
T Consensus       172 ~~~l~~~l~-----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  245 (429)
T 1yiz_A          172 NNELEALFN-----EKTKMIIINTPHNPLGKV-MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWE  245 (429)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGG
T ss_pred             HHHHHHHhc-----cCceEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcC
Confidence            577777664     378889999999999965 57889999999999999999999999999887753333322    23


Q ss_pred             CCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh-----h--cc--hhHHHHHHHHH
Q psy13322        116 VSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV-----I--KD--EELQYNCKQVS  185 (195)
Q Consensus       116 ~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~-----~--~~--~~~~~~l~~~~  185 (195)
                      ..+.+.++||.++ +|+|+|++++++++++.+.......+++.++++++++.++|+.     .  ++  +++++++++++
T Consensus       246 ~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  325 (429)
T 1yiz_A          246 RTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKR  325 (429)
T ss_dssp             GEEEEEEHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHH
T ss_pred             ceEEEecchhccCCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHH
Confidence            3445668899999 8999999999999998887665567788899999999999987     4  22  45677888889


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      ++|.+.|++
T Consensus       326 ~~l~~~L~~  334 (429)
T 1yiz_A          326 DYMASFLAE  334 (429)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999888864

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.79  E-value=4.4e-19  Score=152.84  Aligned_cols=146  Identities=18%  Similarity=0.157  Sum_probs=118.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc--cccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF--GRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~--gr~G~~~~~~~~~~~~  117 (195)
                      +++|+++|++..+ +++++|++|++++++|.+.+    +++|+++|++||++||+||+|+++  +.+|. . ..+.+++.
T Consensus       180 ~~~le~~l~~~~~-~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~-~-~~~~~~~~  252 (427)
T 2w8t_A          180 VEDLDKRLGRLPK-EPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGR-G-VYEAQGLE  252 (427)
T ss_dssp             HHHHHHHHHTSCS-SSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC-C-HHHHTTCT
T ss_pred             HHHHHHHHHhccC-CCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-c-hHhhcCCC
Confidence            6889999986532 27899999999999998887    999999999999999999999964  23333 1 23456776


Q ss_pred             cc----hhhhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322        118 PD----IVTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG  190 (195)
Q Consensus       118 pd----i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~  190 (195)
                      ++    +.++||++|  .++|++++++++++.+....  +.++++.++++++++.++|+.++. +++++++++++++|++
T Consensus       253 ~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~  330 (427)
T 2w8t_A          253 GQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHG  330 (427)
T ss_dssp             TCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             cCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            66    568899997  45599999999888887653  345667899999999999998865 7889999999999999


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       331 ~L~~  334 (427)
T 2w8t_A          331 GLKA  334 (427)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.79  E-value=6.2e-19  Score=152.89  Aligned_cols=148  Identities=18%  Similarity=0.178  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc-----cc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE-----MH  114 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~-----~~  114 (195)
                      +++|++.+.     .++++|++++.++.+|.+ ++.+++++|+++|++||++||+||+|+++++.|. +.++.     ..
T Consensus       191 ~~~l~~~l~-----~~~~~v~l~~p~nptG~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~  263 (447)
T 3b46_A          191 FEQFEKAIT-----SKTKAVIINTPHNPIGKV-FTREELTTLGNICVKHNVVIISDEVYEHLYFTDS-FTRIATLSPEIG  263 (447)
T ss_dssp             HHHHHTTCC-----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCGGGSCHHHH
T ss_pred             HHHHHHhhc-----cCCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC-CcCHHHcCCCCC
Confidence            566766654     368889999888889965 5789999999999999999999999999887763 32332     12


Q ss_pred             CCCcchhhhccccC-CCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--c--hhHHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIA-NGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--D--EELQYNCKQVSAQI  188 (195)
Q Consensus       115 ~~~pdi~~~sK~l~-~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~--~~~~~~l~~~~~~l  188 (195)
                      +....+.++||+++ +||++|++++ ++++++.+.......+++.++++++++.++|+...  +  +++++++++++++|
T Consensus       264 ~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l  343 (447)
T 3b46_A          264 QLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIF  343 (447)
T ss_dssp             TTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHH
Confidence            45556778899999 8999999999 99999888765555677889999999999998762  2  45778899999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|++
T Consensus       344 ~~~L~~  349 (447)
T 3b46_A          344 TSIFDE  349 (447)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988864

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.78  E-value=1.4e-18  Score=148.58  Aligned_cols=149  Identities=15%  Similarity=0.141  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC---
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV---  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~---  116 (195)
                      +++|++.+.     .++++|+++.+.+++|.+. +.+.+++|+++|++||+++|+||+|+++++.|.....+..+..   
T Consensus       164 ~~~l~~~~~-----~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  237 (422)
T 3fvs_A          164 PMELAGKFT-----SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWE  237 (422)
T ss_dssp             HHHHHTTCC-----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGG
T ss_pred             HHHHHhhcC-----CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccC
Confidence            566666554     3688899999999999755 7888999999999999999999999999887753333333321   


Q ss_pred             -CcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh-------hcc--hhHHHHHHHHH
Q psy13322        117 -SPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV-------IKD--EELQYNCKQVS  185 (195)
Q Consensus       117 -~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~-------~~~--~~~~~~l~~~~  185 (195)
                       ...+.++||.+| +|+++|++++++++++.+.......+++.++++++++.++|+.       .++  +++.+++++++
T Consensus       238 ~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  317 (422)
T 3fvs_A          238 RTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCR  317 (422)
T ss_dssp             GEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHH
T ss_pred             cEEEEecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHH
Confidence             233457799999 8999999999999998887665667888899999999999974       222  56788899999


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      ++|.+.|++
T Consensus       318 ~~l~~~L~~  326 (422)
T 3fvs_A          318 DHMIRSLQS  326 (422)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999999875

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.78  E-value=1.9e-18  Score=146.14  Aligned_cols=149  Identities=15%  Similarity=0.097  Sum_probs=118.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-----c
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-----H  114 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-----~  114 (195)
                      ++.|++.++     .++++|+++++.+++|.+ ++.+.+++|.++|++||+++|+||+|+++.+.|..+.++..     .
T Consensus       153 ~~~l~~~l~-----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  226 (388)
T 1j32_A          153 PEQIRQAIT-----PKTKLLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAY  226 (388)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred             HHHHHHhcC-----cCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcccccc
Confidence            577777765     267888989888889976 57889999999999999999999999998776642222222     2


Q ss_pred             CCCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       115 ~~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~  191 (195)
                      +....+.++||.++ +|+++|++++++++++.+.......+++.++++++++.++|+..++  +++.+++++++++|.+.
T Consensus       227 ~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  306 (388)
T 1j32_A          227 ERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDA  306 (388)
T ss_dssp             HTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeechhccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence            33445668899998 8999999999999988887665666788899999999999985432  56778899999999999


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       307 L~~  309 (388)
T 1j32_A          307 LNA  309 (388)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            875

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.78  E-value=1.6e-18  Score=147.41  Aligned_cols=149  Identities=15%  Similarity=0.122  Sum_probs=118.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC---
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV---  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~---  116 (195)
                      +++|++.+.     .++++|+++++++++|.+. +++.+++|+++|++||+++|+||+|+++++.|..+.++..+..   
T Consensus       157 ~~~l~~~~~-----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  230 (410)
T 3e2y_A          157 PRELESKFS-----SKTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWE  230 (410)
T ss_dssp             HHHHHTTCC-----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGG
T ss_pred             HHHHHhhcC-----CCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccC
Confidence            566666553     3788999999999999654 7788999999999999999999999999888753334433322   


Q ss_pred             -CcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh-------hcc--hhHHHHHHHHH
Q psy13322        117 -SPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV-------IKD--EELQYNCKQVS  185 (195)
Q Consensus       117 -~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~-------~~~--~~~~~~l~~~~  185 (195)
                       ...+.++||++| +|+++|++++++++++.+.......+++.++++++++.++|+.       ..+  +++.+++++++
T Consensus       231 ~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  310 (410)
T 3e2y_A          231 RTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKR  310 (410)
T ss_dssp             GEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHH
T ss_pred             eEEEEecchhhcCCCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Confidence             123447799999 8999999999999999887666667888899999999999974       122  56778889999


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      ++|.+.|++
T Consensus       311 ~~l~~~L~~  319 (410)
T 3e2y_A          311 DRMVRLLNS  319 (410)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999998875

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.77  E-value=3.3e-18  Score=144.31  Aligned_cols=150  Identities=12%  Similarity=0.083  Sum_probs=118.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-Cc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-SP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~p  118 (195)
                      +++|++.+++    .++++|+++.+++++|. +++.+.+++|+++|++||+++|+||+|+++++.|..+..+..++. .+
T Consensus       149 ~~~l~~~l~~----~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  223 (391)
T 3dzz_A          149 WADLEEKLAT----PSVRMMVFCNPHNPIGY-AWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAK  223 (391)
T ss_dssp             HHHHHHHHTS----TTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTG
T ss_pred             HHHHHHHHhc----cCceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCcccc
Confidence            6888888863    26778888888888996 456778999999999999999999999999888753444444432 26


Q ss_pred             c----hhhhccccC-CCCceEEEEec-HHHHHHhhcccc-ccCCCchHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHH
Q psy13322        119 D----IVTMAKGIA-NGFPMGAVVTT-TEIAQVLTKAAH-FNTFGGNPVGCVIASTVLDVIK--DEELQYNCKQVSAQII  189 (195)
Q Consensus       119 d----i~~~sK~l~-~G~~~g~v~~~-~~i~~~l~~~~~-~~t~~~~p~~~~aa~aal~~~~--~~~~~~~l~~~~~~l~  189 (195)
                      |    +.++||++| +|+++|+++++ +++++.+..... ..+++.++++++++.++|+..+  .+++.++++++++++.
T Consensus       224 d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~  303 (391)
T 3dzz_A          224 NWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAR  303 (391)
T ss_dssp             GGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            7    457789998 89999999998 888888876542 3456788999999999998743  2567788899999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       304 ~~l~~  308 (391)
T 3dzz_A          304 EFLAK  308 (391)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88865

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.77  E-value=1.9e-18  Score=147.64  Aligned_cols=149  Identities=17%  Similarity=0.139  Sum_probs=116.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc----C
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH----G  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~----~  115 (195)
                      ++.|++.+.     .++++|+++.+++++|.+ ++.+++++|+++|++||++||+||+|+++++.|.....+..+    +
T Consensus       150 ~~~l~~~l~-----~~~~~v~l~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  223 (411)
T 2o0r_A          150 ADALRRAVT-----PRTRALIINSPHNPTGAV-LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAE  223 (411)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGG
T ss_pred             HHHHHHhhc-----cCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCC
Confidence            577777764     367889999988999965 678899999999999999999999999988776433333222    2


Q ss_pred             CCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        116 VSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       116 ~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      ....+.++||.++ +|+++|++++++++++.+.......+++.++++++++.++|+..++  +++++++++++++|.+.|
T Consensus       224 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  303 (411)
T 2o0r_A          224 RTITISSAAKMFNCTGWKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGL  303 (411)
T ss_dssp             GEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeechhhcCCccceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            2233557899999 8999999999999988887655555677788889999999986532  567788889999999888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       304 ~~  305 (411)
T 2o0r_A          304 TE  305 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.77  E-value=4e-18  Score=144.25  Aligned_cols=149  Identities=18%  Similarity=0.194  Sum_probs=117.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CC-C
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GV-S  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~-~  117 (195)
                      +++|++.++     .++++|+++...+.+|.+ ++.+.+++|+++|++||+++|+||+|+++.+.|..+.++..+ +. .
T Consensus       150 ~~~l~~~l~-----~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  223 (389)
T 1gd9_A          150 VDELKKYVT-----DKTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFE  223 (389)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGG
T ss_pred             HHHHHHhcC-----cCceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCC
Confidence            577777765     257788888888888865 678899999999999999999999999887766422333333 22 2


Q ss_pred             cc--hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHH
Q psy13322        118 PD--IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIG  190 (195)
Q Consensus       118 pd--i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~  190 (195)
                      .|  +.++||+++ +|+++|++++++++++.+.......+++.++++++++.++|+....    ++++++++++++++.+
T Consensus       224 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  303 (389)
T 1gd9_A          224 RTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWK  303 (389)
T ss_dssp             GEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecChhhcCCcccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHH
Confidence            34  447789998 8999999999999998887765666778899999999999986533    4567888899999998


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       304 ~L~~  307 (389)
T 1gd9_A          304 RLNE  307 (389)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.77  E-value=2.3e-18  Score=145.74  Aligned_cols=149  Identities=14%  Similarity=0.177  Sum_probs=118.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc----ccC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE----MHG  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~----~~~  115 (195)
                      +++|++.+.     +++++|+++.+++.+|.+ ++.+++++|+++|++||+++|+||+|+++.+.|..+..+.    ..+
T Consensus       153 ~~~l~~~l~-----~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  226 (386)
T 1u08_A          153 WQEFAALLS-----ERTRLVILNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRE  226 (386)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHT
T ss_pred             HHHHHHhhc-----ccCEEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccC
Confidence            577777664     367889998888889965 5788999999999999999999999999877664222221    123


Q ss_pred             CCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        116 VSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       116 ~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      ....+.++||.++ +|+|+|++++++++++.+.......+++.++++++++.++|+..++  +++++++++++++|.+.|
T Consensus       227 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  306 (386)
T 1u08_A          227 RAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNAL  306 (386)
T ss_dssp             TEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHT
T ss_pred             cEEEEecchhhcCCcccceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4445668899999 8999999999999988887655556778888999999999986532  567888999999999988


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       307 ~~  308 (386)
T 1u08_A          307 NE  308 (386)
T ss_dssp             TS
T ss_pred             HH
Confidence            75

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.77  E-value=9.8e-18  Score=142.60  Aligned_cols=153  Identities=15%  Similarity=0.083  Sum_probs=117.4

Q ss_pred             HHHHHHHHHhc--CCCCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         40 YEQLVNAFQYN--VPITGAAALI-AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~--~~~~~~aavi-vEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      +++|++.+++.  .. .++++|+ ++.+++++|. +++.+++++|.++|++||++||+||+|+++.+.|.....+..++.
T Consensus       158 ~~~l~~~l~~~~~~~-~~~~~v~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  235 (407)
T 2zc0_A          158 VDLLEEKIKELKAKG-QKVKLIYTIPTGQNPMGV-TMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDN  235 (407)
T ss_dssp             HHHHHHHHHHHHHTT-CCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCS
T ss_pred             HHHHHHHHHhhhccc-CCceEEEECCCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCC
Confidence            67888887721  11 2677774 6667888897 467899999999999999999999999988776653233333332


Q ss_pred             ---CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--c-c--hhHHHHHHHHHHHH
Q psy13322        117 ---SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--K-D--EELQYNCKQVSAQI  188 (195)
Q Consensus       117 ---~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~-~--~~~~~~l~~~~~~l  188 (195)
                         ..++.++||.+++|+++|++++++++++.+.......+++.++++++++.++|+..  + +  +++.+++++++++|
T Consensus       236 ~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  315 (407)
T 2zc0_A          236 EGRVIVAGTLSKVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIM  315 (407)
T ss_dssp             SCCEEEEEESTTTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHH
T ss_pred             CCCEEEEcccccccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence               23466889999999999999999999988876656667778999999999999864  2 2  46778888999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|++
T Consensus       316 ~~~L~~  321 (407)
T 2zc0_A          316 LKALEN  321 (407)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888864

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.76  E-value=4e-18  Score=145.68  Aligned_cols=150  Identities=15%  Similarity=0.157  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc----
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH----  114 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~----  114 (195)
                      +++.|++.+.     .++++|++....+.+|.+ ++.+++++|+++|++||++||+||+|+++.+.|..+.++..+    
T Consensus       161 d~~~l~~~i~-----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  234 (412)
T 2x5d_A          161 ELERAIRESI-----PKPRMMILGFPSNPTAQC-VELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAK  234 (412)
T ss_dssp             HHHHHHHTEE-----SCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGG
T ss_pred             CHHHHHHhcc-----cCceEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCcc
Confidence            4567776654     245567776667778864 678999999999999999999999999987766423333222    


Q ss_pred             CCCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       115 ~~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~  191 (195)
                      +....+.++||.++ +|+++|++++++++++.+.......+++.|+++++++.++|+..++  +++.+++++++++|.+.
T Consensus       235 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  314 (412)
T 2x5d_A          235 DIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKG  314 (412)
T ss_dssp             GTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCccccCCcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            22223557799999 8999999999999998887655556778899999999999986543  56788899999999998


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       315 L~~  317 (412)
T 2x5d_A          315 LRE  317 (412)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.76  E-value=1.8e-18  Score=147.68  Aligned_cols=144  Identities=17%  Similarity=0.194  Sum_probs=115.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--ccccCCCcccccccCC-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG--FGRTGDNYWGFEMHGV-  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g--~gr~G~~~~~~~~~~~-  116 (195)
                      +++|++.+.+.    +.++|+++++++++|.+.+    +++|+++|++||++||+||+|++  +|++|. .+ ...+++ 
T Consensus       175 ~~~le~~l~~~----~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~-~~-~~~~~~~  244 (409)
T 3kki_A          175 CDHLRMLIQRH----GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGA-GL-LAELGLT  244 (409)
T ss_dssp             HHHHHHHHHHH----CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGC-CH-HHHHTCG
T ss_pred             HHHHHHHHHhc----CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-cc-hhhcCCC
Confidence            68899988864    3479999999999998877    99999999999999999999997  777775 22 244565 


Q ss_pred             -Ccch--hhhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322        117 -SPDI--VTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG  190 (195)
Q Consensus       117 -~pdi--~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~  190 (195)
                       .+|+  .++||++++|  +|++++++++++.+....  ..++.+.+++++++++++++.+++ +++++++++++++|.+
T Consensus       245 ~~~di~~~s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~  322 (409)
T 3kki_A          245 REVHFMTASLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRI  322 (409)
T ss_dssp             GGCSEEEEESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEeecchhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence             4555  5789999965  599999998877766543  223344688999999999998854 6788999999999999


Q ss_pred             HhhcC
Q psy13322        191 YLRVV  195 (195)
Q Consensus       191 ~L~~l  195 (195)
                      .|+++
T Consensus       323 ~L~~~  327 (409)
T 3kki_A          323 GLSQL  327 (409)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            99753

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.76  E-value=3.1e-18  Score=145.41  Aligned_cols=149  Identities=15%  Similarity=0.214  Sum_probs=115.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC-C--
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG-V--  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~-~--  116 (195)
                      +++|++.+.+     ++++|++....+++|. +++.+++++|+++|++||+++|+||+|+++++.|..+..+...+ .  
T Consensus       169 ~~~l~~~l~~-----~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~  242 (407)
T 3nra_A          169 LTGLEEAFKA-----GARVFLFSNPNNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDA  242 (407)
T ss_dssp             HHHHHHHHHT-----TCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCG
T ss_pred             HHHHHHHHhh-----CCcEEEEcCCCCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccC
Confidence            6888888874     3446666666888896 55788999999999999999999999999888775333333332 2  


Q ss_pred             --CcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHH
Q psy13322        117 --SPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       117 --~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~  191 (195)
                        ...+.++||+++ +|+++|++++++++++.+.......+++.++++++++.++|+..+.  ++.++++++++++|.+.
T Consensus       243 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  322 (407)
T 3nra_A          243 ENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHV  322 (407)
T ss_dssp             GGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence              233557899999 8999999999999999887766667777888988888888864322  56678888899999988


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       323 L~~  325 (407)
T 3nra_A          323 LRG  325 (407)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            875

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.76  E-value=2.8e-18  Score=144.27  Aligned_cols=150  Identities=14%  Similarity=0.131  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccC-CCcccccc---c
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTG-DNYWGFEM---H  114 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G-~~~~~~~~---~  114 (195)
                      ++++|++.+.+     +.++|++...++.+|. +++.+.+++|+++|++||+++|+||+|+++++.| .....+..   .
T Consensus       139 d~~~l~~~l~~-----~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  212 (377)
T 3fdb_A          139 NLHDVEKGFQA-----GARSILLCNPYNPLGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAA  212 (377)
T ss_dssp             CHHHHHHHHHT-----TCCEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHH
T ss_pred             CHHHHHHHhcc-----CCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCC
Confidence            36888888874     2335666666888886 5577889999999999999999999999988877 32222221   1


Q ss_pred             CCCcchhhhccccC-CCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIA-NGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIG  190 (195)
Q Consensus       115 ~~~pdi~~~sK~l~-~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~  190 (195)
                      +....+.++||++| +|+++|++++ ++++++.+.......+++.|+++++++.++|+..++  +++.+++++++++|.+
T Consensus       213 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~  292 (377)
T 3fdb_A          213 SVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLH  292 (377)
T ss_dssp             HHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            22344668899997 8999998776 788988887766666788899999999999986533  5678889999999998


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       293 ~L~~  296 (377)
T 3fdb_A          293 EIPK  296 (377)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8865

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.76  E-value=7.7e-18  Score=142.92  Aligned_cols=150  Identities=13%  Similarity=0.129  Sum_probs=114.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-----
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-----  114 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-----  114 (195)
                      ++.|++.+++    .++++|++...++.+|. +++++++++|+++|++||++||+||+|+++++.|..+..+..+     
T Consensus       153 ~~~l~~~l~~----~~~~~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  227 (399)
T 1c7n_A          153 FQKLEKLSKD----KNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLA  227 (399)
T ss_dssp             HHHHHHHHTC----TTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred             HHHHHHHhcc----CCCcEEEEcCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcccc
Confidence            6788888863    26778888778888886 5678999999999999999999999999988777423233222     


Q ss_pred             CCCcchhhhccccC-CCCceEEEEec-HHHHHHhhccccccCC-CchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Q psy13322        115 GVSPDIVTMAKGIA-NGFPMGAVVTT-TEIAQVLTKAAHFNTF-GGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQII  189 (195)
Q Consensus       115 ~~~pdi~~~sK~l~-~G~~~g~v~~~-~~i~~~l~~~~~~~t~-~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~  189 (195)
                      +....+.++||+++ +|+++|+++++ +++++.+.......++ +.|+++++++.++|+..++  ++..++++++++++.
T Consensus       228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~  307 (399)
T 1c7n_A          228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVK  307 (399)
T ss_dssp             TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            12223557899999 89999999997 6788887765444444 5689999999999986422  456778888899998


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       308 ~~L~~  312 (399)
T 1c7n_A          308 DFFEV  312 (399)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88864

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.75  E-value=3.2e-18  Score=144.62  Aligned_cols=148  Identities=18%  Similarity=0.233  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc--ccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE--MHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~--~~~~~  117 (195)
                      +++|++.+.     .++++|+++.+.+.+|.+ ++.+++++|.++|++||+++|+||+|+++.+ |....++.  ..+..
T Consensus       142 ~~~l~~~l~-----~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~  214 (381)
T 1v2d_A          142 LSALEKALT-----PRTRALLLNTPMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERT  214 (381)
T ss_dssp             HHHHHTTCC-----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTE
T ss_pred             HHHHHHhcC-----cCCEEEEECCCCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCE
Confidence            566666553     367889999988889975 5678999999999999999999999998855 53222232  23556


Q ss_pred             cchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--cc--hhHHHHHHHHHHHHHHHh
Q psy13322        118 PDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--KD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       118 pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      +.+.++||.++ +|+++|++++++++++.+.......+++.++++++++.++|+..  ++  +++++++++++++|.+.|
T Consensus       215 ~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L  294 (381)
T 1v2d_A          215 FTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGL  294 (381)
T ss_dssp             EEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeechhhcCCcccceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778899998 89999999999988888766545556778899999999999865  33  567888999999999988


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       295 ~~  296 (381)
T 1v2d_A          295 RA  296 (381)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.75  E-value=1.1e-17  Score=141.69  Aligned_cols=150  Identities=10%  Similarity=0.014  Sum_probs=114.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC-c
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS-P  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~-p  118 (195)
                      ++.|++.+++    .++++|++...++++|.+ ++.+++++|+++|++||++||+||+|+++++.|..+.....+... +
T Consensus       151 ~~~l~~~l~~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  225 (390)
T 1d2f_A          151 MGKLEAVLAK----PECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDW  225 (390)
T ss_dssp             HHHHHHHHTS----TTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSE
T ss_pred             HHHHHHHhcc----CCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhH
Confidence            6788888863    257778877778888965 566899999999999999999999999988777533222222111 1


Q ss_pred             c-hhhhccccC-CCCceEEEEec-HHHHHHhhcccc-ccCC-CchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHH
Q psy13322        119 D-IVTMAKGIA-NGFPMGAVVTT-TEIAQVLTKAAH-FNTF-GGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       119 d-i~~~sK~l~-~G~~~g~v~~~-~~i~~~l~~~~~-~~t~-~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~  191 (195)
                      | +.++||+++ +|+++|+++++ +++++.+..... ..++ +.|+++++++.++|+..++  ++..++++++++++.+.
T Consensus       226 d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  305 (390)
T 1d2f_A          226 ALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADK  305 (390)
T ss_dssp             EEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            3 778899999 89999999985 788887766544 4565 6789999999999986432  45677888889999888


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       306 L~~  308 (390)
T 1d2f_A          306 MNA  308 (390)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            864

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.75  E-value=7.2e-18  Score=145.26  Aligned_cols=148  Identities=17%  Similarity=0.167  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     .+.++|++....+++|. .++++++++|+++|++||+++|+||+|++|++.|..+.....++..++
T Consensus       181 ~~~l~~~l~-----~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~  254 (427)
T 3dyd_A          181 LKQLEYLID-----EKTACLIVNNPSNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVP  254 (427)
T ss_dssp             HHHHHSSCC-----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCC
T ss_pred             HHHHHHHhc-----cCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCc
Confidence            566666554     25667777777888896 567888999999999999999999999999888763434455555555


Q ss_pred             hh---hhccccC-CCCceEEEEec-------HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHH
Q psy13322        120 IV---TMAKGIA-NGFPMGAVVTT-------TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQVS  185 (195)
Q Consensus       120 i~---~~sK~l~-~G~~~g~v~~~-------~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~  185 (195)
                      ++   ++||.++ .|+|+|+++++       +++++.+..... .+++.++++++++.++|+....   ++..+++++++
T Consensus       255 vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~  333 (427)
T 3dyd_A          255 ILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQ-RILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNA  333 (427)
T ss_dssp             EEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             EEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            55   7899987 79999999997       567777655422 3678899999999999985322   56778888999


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      +++.+.|++
T Consensus       334 ~~l~~~L~~  342 (427)
T 3dyd_A          334 DLCYGALAA  342 (427)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999998875

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.75  E-value=6.1e-18  Score=143.25  Aligned_cols=149  Identities=11%  Similarity=0.040  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc------
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM------  113 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~------  113 (195)
                      ++.|++.+.+     ++++|+++..++.+|. +++.+.+++|.++|++||+++|+||+|+++.+.|....+...      
T Consensus       158 ~~~l~~~~~~-----~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  231 (396)
T 3jtx_A          158 WRSISEEVWK-----RTKLVFVCSPNNPSGS-VLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLG  231 (396)
T ss_dssp             GGGSCHHHHH-----TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTT
T ss_pred             HHHHHHhhcc-----CcEEEEEECCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcc
Confidence            4566666653     5667887777888886 556777999999999999999999999998887732333311      


Q ss_pred             --cCCCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHH
Q psy13322        114 --HGVSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQII  189 (195)
Q Consensus       114 --~~~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~  189 (195)
                        .+....+.++||+++ +|+++|++++++++++.+.......+++.|+++++++.++|+..+. ++.+++++++.+++.
T Consensus       232 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~  311 (396)
T 3jtx_A          232 RSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVI  311 (396)
T ss_dssp             CCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence              344455678899988 7999999999999999887765666778899999999999975322 567788888899998


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       312 ~~l~~  316 (396)
T 3jtx_A          312 PILQQ  316 (396)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            88865

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.75  E-value=1.8e-17  Score=144.08  Aligned_cols=153  Identities=18%  Similarity=0.140  Sum_probs=116.3

Q ss_pred             HHHHHHHHHhc--CCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc--
Q psy13322         40 YEQLVNAFQYN--VPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH--  114 (195)
Q Consensus        40 ~~~l~~~l~~~--~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~--  114 (195)
                      ++.|++.|+..  .. .++++|++.| .++.+|.+ ++.+++++|.++|++||++||+||+|+++.+.|.....+..+  
T Consensus       200 ~~~L~~~l~~~~~~~-~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~  277 (448)
T 3aow_A          200 VEILEEKLKELKSQG-KKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDN  277 (448)
T ss_dssp             HHHHHHHHHHHHHTT-CCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCT
T ss_pred             HHHHHHHHhhhhccC-CCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCC
Confidence            67788887621  11 2678876555 56667865 688999999999999999999999999887766522223222  


Q ss_pred             -CCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--cc--hhHHHHHHHHHHHHH
Q psy13322        115 -GVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--KD--EELQYNCKQVSAQII  189 (195)
Q Consensus       115 -~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~~--~~~~~~l~~~~~~l~  189 (195)
                       +...++.+|||.+++|+|+||+++++++++.+.......+++.|+++++++.++|+..  .+  +++++.+++++++|.
T Consensus       278 ~~~vi~~~S~SK~~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~  357 (448)
T 3aow_A          278 EGRVIYLGTFSKILAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAML  357 (448)
T ss_dssp             TSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEccchhhccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence             3345677899999999999999999999998876655566778999999999999863  22  456777888889988


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       358 ~~L~~  362 (448)
T 3aow_A          358 EALEE  362 (448)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88864

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.74  E-value=4e-18  Score=143.78  Aligned_cols=148  Identities=13%  Similarity=0.125  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccC---
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHG---  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~---  115 (195)
                      ++.|++.+.     .++++|++....+++|.+ ++.+++++|.++|++||+++|+||+|+++.+.|. ..+. ...+   
T Consensus       148 ~~~l~~~l~-----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~  220 (376)
T 2dou_A          148 LKAVPEGVW-----REAKVLLLNYPNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE-APSPLALPGAKE  220 (376)
T ss_dssp             GGGSCHHHH-----HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC-CCCGGGSTTGGG
T ss_pred             HHHHHHhhc-----cCceEEEECCCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCChhhcCCCCC
Confidence            456666664     256788887777888865 6789999999999999999999999998877664 2222 2222   


Q ss_pred             CCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        116 VSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       116 ~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      ....+.++||++| +|+++|++++++++++.+.......+++.|+++++++.++|+..++  ++.++++++++++|.+.|
T Consensus       221 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  300 (376)
T 2dou_A          221 RVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEAL  300 (376)
T ss_dssp             TEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233558899998 8999999999999998887665556677789999999999986422  466778889999999988


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       301 ~~  302 (376)
T 2dou_A          301 KG  302 (376)
T ss_dssp             TT
T ss_pred             HH
Confidence            75

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.74  E-value=1.5e-17  Score=142.96  Aligned_cols=154  Identities=12%  Similarity=0.109  Sum_probs=115.9

Q ss_pred             HHHHHHHHHhcC---CCCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322         40 YEQLVNAFQYNV---PITGAAALI-AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        40 ~~~l~~~l~~~~---~~~~~aavi-vEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ++.|++.+++..   ...++++|+ +...++.+|.+ ++.+++++|.++|++||++||+||+|+++.+.|.....+..++
T Consensus       169 ~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  247 (425)
T 1vp4_A          169 LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG  247 (425)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH
T ss_pred             HHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhC
Confidence            677888877520   002677874 56677778864 6789999999999999999999999999877665322333222


Q ss_pred             CCc---chhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--cc--hhHHHHHHHHHHHH
Q psy13322        116 VSP---DIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--KD--EELQYNCKQVSAQI  188 (195)
Q Consensus       116 ~~p---di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~~--~~~~~~l~~~~~~l  188 (195)
                      ..+   .+.++||++++|+|+|++++++++++.+.......+++.|+++++++.++|+..  ++  +++.+++++++++|
T Consensus       248 ~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l  327 (425)
T 1vp4_A          248 GPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVM  327 (425)
T ss_dssp             CTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeccccccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            222   245789999989999999999999888876555556777999999999999864  22  46677888899999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|++
T Consensus       328 ~~~L~~  333 (425)
T 1vp4_A          328 LNALEE  333 (425)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888864

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.74  E-value=9.2e-18  Score=142.57  Aligned_cols=147  Identities=21%  Similarity=0.236  Sum_probs=115.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC--CC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG--VS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~--~~  117 (195)
                      +++|++.++     .++++|+++.+.+.+|. +++.+++++|.++|++||+++|+||+|+++.+.|. ..+...+.  ..
T Consensus       164 ~~~l~~~l~-----~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~-~~~~~~~~~~~~  236 (389)
T 1o4s_A          164 LEEVEGLLV-----GKTKAVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE-FTSILDVSEGFD  236 (389)
T ss_dssp             HHHHHHTCC-----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC-CCCHHHHCSSST
T ss_pred             HHHHHHhcc-----cCceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCCHhhcCCCCC
Confidence            567777664     26778888888888896 56789999999999999999999999998877663 33333221  12


Q ss_pred             cc--hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        118 PD--IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       118 pd--i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .|  +.++||.++ +|+++|++++++++++.+.......+++.+++++.++.++|+.. .+++.++++++++++.+.|++
T Consensus       237 ~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~  315 (389)
T 1o4s_A          237 RIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKK  315 (389)
T ss_dssp             TEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHh
Confidence            24  447789998 89999999999999888876655567778899999998888754 567888999999999998875

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.74  E-value=1.9e-17  Score=142.60  Aligned_cols=152  Identities=16%  Similarity=0.142  Sum_probs=112.1

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC---
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG---  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~---  115 (195)
                      +++|++.|+++... .++++|++++..+++|. +++.+.+++|+++|++||++||+||+|+++++.|..+.......   
T Consensus       175 ~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~  253 (435)
T 3piu_A          175 ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDR  253 (435)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhcccc
Confidence            67788887753111 37889999998888896 66778899999999999999999999999877775333332221   


Q ss_pred             -CC-----cc----hhhhccccC-CCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc---c--hhHH
Q psy13322        116 -VS-----PD----IVTMAKGIA-NGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK---D--EELQ  178 (195)
Q Consensus       116 -~~-----pd----i~~~sK~l~-~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~---~--~~~~  178 (195)
                       +.     +|    +.++||++| +|+|+|++++ ++++.+.+...  ..++..++++++++.++++..+   +  ++.+
T Consensus       254 ~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  331 (435)
T 3piu_A          254 NCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--SSFGLVSSQTQHLLSAMLSDKKLTKNYIAENH  331 (435)
T ss_dssp             ------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHH--GGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             ccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHH--hhcCCCCHHHHHHHHHHhcChHHHHHHHHHHH
Confidence             11     44    457899999 8999999999 56777776543  2344567888888888887432   1  4567


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++++++.++|.+.|++
T Consensus       332 ~~~~~~~~~l~~~L~~  347 (435)
T 3piu_A          332 KRLKQRQKKLVSGLQK  347 (435)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7888889999888875

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.73  E-value=4.7e-18  Score=145.35  Aligned_cols=148  Identities=17%  Similarity=0.156  Sum_probs=114.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc----C
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH----G  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~----~  115 (195)
                      +++|++.+.     .++++|++....+++|.+ ++.+++++|+++|++||++||+||+|+++.+.|. ..+...+    +
T Consensus       171 ~~~l~~~l~-----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~  243 (404)
T 2o1b_A          171 WSKVDSQII-----DKTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAK-NPSILASENGKD  243 (404)
T ss_dssp             GGGSCHHHH-----HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSC-CCCGGGSTTHHH
T ss_pred             HHHHHHhhc-----cCceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCChhhcCCCCC
Confidence            456666664     256788888777788865 6789999999999999999999999998876663 2222222    1


Q ss_pred             CCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        116 VSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       116 ~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      ....+.++||+++ +|+++|++++++++++.+.......+++.++++++++.++|+..++  +++++++++++++|.+.|
T Consensus       244 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  323 (404)
T 2o1b_A          244 VAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAML  323 (404)
T ss_dssp             HEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEecchhccCchhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            1223557899998 8999999999999998887665556678899999999999987422  566778889999999888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       324 ~~  325 (404)
T 2o1b_A          324 AK  325 (404)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.73  E-value=1.5e-17  Score=140.26  Aligned_cols=148  Identities=15%  Similarity=0.114  Sum_probs=113.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC----
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG----  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~----  115 (195)
                      +++|++.++     . +++|+++..++++|. +++.+.+++|+++|++||+++|+||+|+++++.|.....+..++    
T Consensus       155 ~~~l~~~l~-----~-~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  227 (391)
T 4dq6_A          155 YEDIENKIK-----D-VKLFILCNPHNPVGR-VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFE  227 (391)
T ss_dssp             HHHHHHHCT-----T-EEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred             HHHHHHHhh-----c-CCEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCcccc
Confidence            577777765     2 667888888888896 55777899999999999999999999999988775332332221    


Q ss_pred             -CCcchhhhccccC-CCCceEEEEecH-HHHHHhhccc-cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Q psy13322        116 -VSPDIVTMAKGIA-NGFPMGAVVTTT-EIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQII  189 (195)
Q Consensus       116 -~~pdi~~~sK~l~-~G~~~g~v~~~~-~i~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~  189 (195)
                       ....+.++||+++ +|+++|++++++ ++++.+.... ...+++.|+++++++.++|+..++  ++..++++++++++.
T Consensus       228 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~  307 (391)
T 4dq6_A          228 KNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAI  307 (391)
T ss_dssp             HTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence             1122447899998 899999999885 8888877653 344567899999999999986432  567788888999998


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       308 ~~l~~  312 (391)
T 4dq6_A          308 KYINE  312 (391)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88864

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.73  E-value=6.1e-17  Score=139.24  Aligned_cols=154  Identities=12%  Similarity=0.061  Sum_probs=115.9

Q ss_pred             HHHHHHHHHhcCC-------CCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc
Q psy13322         40 YEQLVNAFQYNVP-------ITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF  111 (195)
Q Consensus        40 ~~~l~~~l~~~~~-------~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~  111 (195)
                      ++.|++.+++..+       ..++++|++.| .++.+|. +++.+.+++|.++|++||++||+||+|+++.+.|....++
T Consensus       168 ~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~  246 (425)
T 2r2n_A          168 PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGN-SLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTF  246 (425)
T ss_dssp             HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCT
T ss_pred             HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCc
Confidence            6788888874310       02566787755 6777886 4678999999999999999999999999887766422233


Q ss_pred             cccC---CCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-----c--hhHHHHH
Q psy13322        112 EMHG---VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-----D--EELQYNC  181 (195)
Q Consensus       112 ~~~~---~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-----~--~~~~~~l  181 (195)
                      ..++   ....+.++||++++|+|+||+++++++++.+.......+++.|+++++++.++|+.+.     +  +++++++
T Consensus       247 ~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~  326 (425)
T 2r2n_A          247 LSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFY  326 (425)
T ss_dssp             GGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            2222   2233558899999999999999999999888766556677889999999999998632     1  4566778


Q ss_pred             HHHHHHHHHHhhc
Q psy13322        182 KQVSAQIIGYLRV  194 (195)
Q Consensus       182 ~~~~~~l~~~L~~  194 (195)
                      ++++++|.+.|++
T Consensus       327 ~~~~~~l~~~L~~  339 (425)
T 2r2n_A          327 SNQKDAILAAADK  339 (425)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888887764

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.73  E-value=1.4e-17  Score=141.45  Aligned_cols=150  Identities=12%  Similarity=0.077  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEE-EEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC-
Q psy13322         40 YEQLVNAFQYNVPITGAAAL-IAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS-  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aav-ivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~-  117 (195)
                      +++|++.+++.    ++++| ++...++.+|.+ ++.+++++|.++|++||+++|+||+|+++++.|........++.. 
T Consensus       151 ~~~l~~~l~~~----~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  225 (397)
T 2zyj_A          151 LDALEEVLKRE----RPRFLYLIPSFQNPTGGL-TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREA  225 (397)
T ss_dssp             HHHHHHHHHHC----CCSCEEECCBSCTTTCCB-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHH
T ss_pred             HHHHHHHHhhc----CCeEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCccc
Confidence            68888888753    34466 466678888865 678899999999999999999999999988777532233323222 


Q ss_pred             -----cchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHH
Q psy13322        118 -----PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK---DEELQYNCKQVSAQII  189 (195)
Q Consensus       118 -----pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~---~~~~~~~l~~~~~~l~  189 (195)
                           ..+.++||++++|+++|++++++++++.+.......+++.|+++++++.++|+...   -+++.++++++++++.
T Consensus       226 ~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  305 (397)
T 2zyj_A          226 GYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAML  305 (397)
T ss_dssp             TCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccccccccceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence                 22457799999889999999999998888765555567779999999999997542   1456677888888888


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       306 ~~L~~  310 (397)
T 2zyj_A          306 HALDR  310 (397)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.73  E-value=2.9e-17  Score=140.06  Aligned_cols=151  Identities=9%  Similarity=0.095  Sum_probs=111.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccC--CCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTG--DNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G--~~~~~~~~~~~~  117 (195)
                      ++.|++.+.++.  .+..+|++....+.+|. +++.+++++|+++|++||++||+||+|+++++.|  ..++++..+...
T Consensus       170 ~~~l~~~l~~~~--~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  246 (412)
T 1ajs_A          170 LQGFLSDLENAP--EFSIFVLHACAHNPTGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSE  246 (412)
T ss_dssp             HHHHHHHHHHSC--TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred             HHHHHHHHHhCC--CCcEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhcc
Confidence            678888887653  25667777777777885 6788999999999999999999999999998876  113334322212


Q ss_pred             cc----hhhhccccCC-CCceEEEEe---cHHHHH----HhhccccccCCC-chHHHHHHHHHHHHhhc--------chh
Q psy13322        118 PD----IVTMAKGIAN-GFPMGAVVT---TTEIAQ----VLTKAAHFNTFG-GNPVGCVIASTVLDVIK--------DEE  176 (195)
Q Consensus       118 pd----i~~~sK~l~~-G~~~g~v~~---~~~i~~----~l~~~~~~~t~~-~~p~~~~aa~aal~~~~--------~~~  176 (195)
                      +|    +.++||+++. |+|+|++++   ++++++    .+... ...+++ .|+++++++.++|+...        .++
T Consensus       247 ~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  325 (412)
T 1ajs_A          247 GFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKT  325 (412)
T ss_dssp             TCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            33    4577999995 999999999   887443    33321 234444 58899999999998652        256


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy13322        177 LQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       177 ~~~~l~~~~~~l~~~L~~  194 (195)
                      +.+++++++++|.+.|++
T Consensus       326 ~~~~~~~~~~~l~~~L~~  343 (412)
T 1ajs_A          326 MADRILSMRSELRARLEA  343 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            788899999999998875

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.72  E-value=1.7e-17  Score=139.59  Aligned_cols=144  Identities=19%  Similarity=0.204  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCC-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVS-  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~-  117 (195)
                      +++|++.+.     .++++|+++.+.+++|.+.+    ++ |.++|++||+++|+||+|+++.+.|. ..+...+ +.. 
T Consensus       144 ~~~l~~~l~-----~~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~  212 (370)
T 2z61_A          144 VESLEEALS-----DKTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFDENLE  212 (370)
T ss_dssp             HHHHHHHCC-----SSEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTCTTCS
T ss_pred             HHHHHHhcc-----cCceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHccCCCC
Confidence            566776664     26778888888888998776    44 99999999999999999998877664 3333332 122 


Q ss_pred             cc--hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh-hcc--hhHHHHHHHHHHHHHHH
Q psy13322        118 PD--IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV-IKD--EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       118 pd--i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~-~~~--~~~~~~l~~~~~~l~~~  191 (195)
                      .|  +.++||.++ +|+++|++++++++++.+.......+++.|+++++++.++|+. .++  ++++++++++++++.+.
T Consensus       213 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  292 (370)
T 2z61_A          213 KTILINGFSKLYAMTGWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKY  292 (370)
T ss_dssp             SEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEecChhccCCccceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            23  447789998 8999999999999998887665556678899999999999876 322  56778899999999998


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       293 L~~  295 (370)
T 2z61_A          293 VKD  295 (370)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.72  E-value=4.4e-17  Score=137.05  Aligned_cols=136  Identities=10%  Similarity=-0.009  Sum_probs=108.4

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc---------ccCCCcchhhhccc
Q psy13322         56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE---------MHGVSPDIVTMAKG  126 (195)
Q Consensus        56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~---------~~~~~pdi~~~sK~  126 (195)
                      +++|++...++.+|. +++.+++++|+++|++||++||+||+|+++.+.|. ..+..         ..+....+.++||+
T Consensus       155 ~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~  232 (376)
T 3ezs_A          155 VDLVILNSPNNPTGR-TLSLEELISWVKLALKHDFILINDECYSEIYENTP-PPSLLEACMLAGNEAFKNVLVIHSLSKR  232 (376)
T ss_dssp             CSEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC-CCCHHHHHHHTTCTTCTTEEEEEESTTT
T ss_pred             CCEEEEcCCCCCcCC-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCHHHccccccccccCcEEEEecchhc
Confidence            346777666888886 45778899999999999999999999999888774 33332         23444456688999


Q ss_pred             cC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhh
Q psy13322        127 IA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       127 l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~  193 (195)
                      +| +|+++|++++++++++.+.......+++.|+++++++.++|+..+. ++..++++++++++.+.|+
T Consensus       233 ~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~  301 (376)
T 3ezs_A          233 SSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK  301 (376)
T ss_dssp             TTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST
T ss_pred             cCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            98 8999999999999999888766667788899999999999986332 5677888888888888764

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.72  E-value=3.7e-17  Score=138.18  Aligned_cols=148  Identities=20%  Similarity=0.250  Sum_probs=116.6

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-cccCCCcccccccCC
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GF-GRTGDNYWGFEMHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~-gr~G~~~~~~~~~~~  116 (195)
                      +++|++.+++..+. .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ |+ +..|.  ...+.+++
T Consensus       159 ~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~  232 (399)
T 3tqx_A          159 MGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGR--GTPEYCGV  232 (399)
T ss_dssp             TTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC--CHHHHHTC
T ss_pred             HHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCC--chHHhhCC
Confidence            46777777754321 27899999999999998877    9999999999999999999995 43 33333  12344565


Q ss_pred             --Ccchh--hhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhh-c-chhHHHHHHHHHHHH
Q psy13322        117 --SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVI-K-DEELQYNCKQVSAQI  188 (195)
Q Consensus       117 --~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~-~-~~~~~~~l~~~~~~l  188 (195)
                        .+|++  ++||+++ |.++|++++++++++.+....  +..+.+.++++++++.++++.+ + .++++++++++++++
T Consensus       233 ~~~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  311 (399)
T 3tqx_A          233 ADRVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYF  311 (399)
T ss_dssp             TTCCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence              67877  7899999 678899999999998887643  2334567899999999999987 4 367889999999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|++
T Consensus       312 ~~~L~~  317 (399)
T 3tqx_A          312 RAGMEK  317 (399)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.71  E-value=1.4e-16  Score=136.77  Aligned_cols=152  Identities=13%  Similarity=0.129  Sum_probs=113.8

Q ss_pred             HHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc----
Q psy13322         40 YEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH----  114 (195)
Q Consensus        40 ~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~----  114 (195)
                      ++.|++.+++.. ...++++|++....+++|.+ ++.+++++|.++|++||++||+||+|+++++.|..+.....+    
T Consensus       172 ~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~  250 (428)
T 1iay_A          172 SKAVKEAYENAQKSNIKVKGLILTNPSNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQ  250 (428)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSG
T ss_pred             HHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccc
Confidence            677877776421 01368888888778888974 688999999999999999999999999877765422222211    


Q ss_pred             ---CCCcc----hhhhccccC-CCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc---c--hhHHHH
Q psy13322        115 ---GVSPD----IVTMAKGIA-NGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK---D--EELQYN  180 (195)
Q Consensus       115 ---~~~pd----i~~~sK~l~-~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~---~--~~~~~~  180 (195)
                         ++.+|    +.++||++| +|+|+|++++ ++++++.+...  ..+++.++++++++.++|+..+   +  ++++++
T Consensus       251 ~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  328 (428)
T 1iay_A          251 EMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKM--SSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMR  328 (428)
T ss_dssp             GGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHH--HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHH--HhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence               12366    457899999 8999999999 67888877643  2235678999999999987532   1  467788


Q ss_pred             HHHHHHHHHHHhhc
Q psy13322        181 CKQVSAQIIGYLRV  194 (195)
Q Consensus       181 l~~~~~~l~~~L~~  194 (195)
                      +++++++|.+.|++
T Consensus       329 ~~~~~~~l~~~L~~  342 (428)
T 1iay_A          329 LGKRHKHFTNGLEV  342 (428)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            89999999998875

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.71  E-value=3.8e-17  Score=139.66  Aligned_cols=136  Identities=14%  Similarity=0.171  Sum_probs=108.0

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-Ccchh--hhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-SPDIV--TMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~pdi~--~~sK~l~-~G  130 (195)
                      ++++|+++.+++.+|.+ ++.+++++|+++|++||++||+||+|+++++.|. +.+. ..++ ..|++  ++||+++ +|
T Consensus       174 ~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~-~~~~-~~~~~~~~i~~~s~sK~~g~~G  250 (409)
T 2gb3_A          174 RTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASA-LSIESDKVVVIDSVSKKFSACG  250 (409)
T ss_dssp             TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCG-GGSCCTTEEEEEESTTTTTCGG
T ss_pred             CCeEEEECCCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEECcccccccCCC-CCCc-cccCCCCEEEEecchhccCCcc
Confidence            67888999888888975 5779999999999999999999999998877664 4343 1133 23654  6789999 89


Q ss_pred             CceEEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++|++++++ ++++.+.......+ +.++++++++.++|+...+  +++.++++++++++.+.|++
T Consensus       251 ~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  316 (409)
T 2gb3_A          251 ARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE  316 (409)
T ss_dssp             GCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998 89888876544444 7789999999999975322  56778889999999998875

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.70  E-value=3e-17  Score=141.73  Aligned_cols=139  Identities=12%  Similarity=0.035  Sum_probs=106.6

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC----CCcchhhhccccC-C
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG----VSPDIVTMAKGIA-N  129 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~----~~pdi~~~sK~l~-~  129 (195)
                      ++++|+++...+++|. +++.+++++|+++|++||++||+||+|++|++.|.....+..+.    ....+.++||++| +
T Consensus       209 ~~~~v~l~~p~NPtG~-~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~  287 (449)
T 3qgu_A          209 RTDIIFFCSPNNPTGA-AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT  287 (449)
T ss_dssp             CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCT
T ss_pred             CCCEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCc
Confidence            5668888888888886 55788999999999999999999999999887764233333332    2234568899999 8


Q ss_pred             CCceEEEEecHHHHH--------HhhccccccCCCchHHHHHHHHHHHHhh--c-chhHHHHHHHHHHHHHHHhhc
Q psy13322        130 GFPMGAVVTTTEIAQ--------VLTKAAHFNTFGGNPVGCVIASTVLDVI--K-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       130 G~~~g~v~~~~~i~~--------~l~~~~~~~t~~~~p~~~~aa~aal~~~--~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+++|++++++++++        .+.......+++.++++++++.++|+..  + .+++.+++++++++|.+.|++
T Consensus       288 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  363 (449)
T 3qgu_A          288 GVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE  363 (449)
T ss_dssp             TCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988764        2332223344577999999999999752  2 257788999999999999875

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.70  E-value=1e-16  Score=136.01  Aligned_cols=148  Identities=17%  Similarity=0.223  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-Ccc-ccCCCcccccccCC
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFG-RTGDNYWGFEMHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~g-r~G~~~~~~~~~~~  116 (195)
                      +++|++.+++..+. .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ |+. ++|. .+ .+..++
T Consensus       161 ~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~-~~-~~~~~~  234 (401)
T 1fc4_A          161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGR-GS-HEYCDV  234 (401)
T ss_dssp             HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSC-CH-HHHTTC
T ss_pred             HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cc-HHHcCC
Confidence            57788877653210 16789999999999998776    9999999999999999999995 773 4565 21 233455


Q ss_pred             Cc--chh--hhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHH
Q psy13322        117 SP--DIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQII  189 (195)
Q Consensus       117 ~p--di~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~  189 (195)
                      .+  |++  ++||+++++. +|++++++++++.+....  +.++++.++++++++.++|+.++. +++.++++++++++.
T Consensus       235 ~~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~  313 (401)
T 1fc4_A          235 MGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFR  313 (401)
T ss_dssp             TTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CcCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            44  666  7789996544 599999999988887643  334667899999999999998753 678899999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       314 ~~L~~  318 (401)
T 1fc4_A          314 EQMSA  318 (401)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.70  E-value=1e-16  Score=135.76  Aligned_cols=136  Identities=18%  Similarity=0.165  Sum_probs=107.5

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G  130 (195)
                      ++++|+++.+.+++|. +.+.+.+++|.++|++||+++|+||+|+++.+.|. ......  ..++   +.++||.+| +|
T Consensus       161 ~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~--~~~~~i~~~s~sK~~g~~G  236 (391)
T 3h14_A          161 DLAGLMVASPANPTGT-MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVTALE--LTDECYVINSFSKYFSMTG  236 (391)
T ss_dssp             CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGGG--TCSSSEEEEESSSTTCCTT
T ss_pred             CCeEEEECCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC-CcChhh--cCCCEEEEEechhccCCcc
Confidence            3457888888888896 45677899999999999999999999999887775 323322  2333   337799999 89


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++|++++++++++.+.......+++.++++++++.++|+..+. ++.+++++++++++.+.|++
T Consensus       237 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~  301 (391)
T 3h14_A          237 WRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPK  301 (391)
T ss_dssp             SCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988887766667788899999999999982221 56678888888888888764

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.70  E-value=1.3e-16  Score=136.97  Aligned_cols=151  Identities=16%  Similarity=0.075  Sum_probs=115.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-----cCCEEEEeccccCccccCCCccccc-c
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS-----NNGLFISDEVQTGFGRTGDNYWGFE-M  113 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~-----~~~llI~DEv~~g~gr~G~~~~~~~-~  113 (195)
                      +++|++.+++..  .++++|++...++.+|. +++.+++++|.++|++     ||+++|+||+|+++.+.|..+.++. .
T Consensus       176 ~~~l~~~l~~~~--~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~  252 (430)
T 2x5f_A          176 TDSLVEALQSYN--KDKVIMILNYPNNPTGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTA  252 (430)
T ss_dssp             SHHHHHHHHHCC--SSEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHH
T ss_pred             HHHHHHHHHhcC--CCCEEEEEcCCCCCCCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHH
Confidence            578888887653  25666665555888885 5788999999999999     9999999999999877664222322 2


Q ss_pred             c-CCCcc------hhhhccccC-CCCceEEEEe---cHHHHHHhhccccc----cCCCchHHHHHHHHHHHH-hh---cc
Q psy13322        114 H-GVSPD------IVTMAKGIA-NGFPMGAVVT---TTEIAQVLTKAAHF----NTFGGNPVGCVIASTVLD-VI---KD  174 (195)
Q Consensus       114 ~-~~~pd------i~~~sK~l~-~G~~~g~v~~---~~~i~~~l~~~~~~----~t~~~~p~~~~aa~aal~-~~---~~  174 (195)
                      + +..++      +.++||.++ +|+++|++++   ++++++.+......    .+++.|+++++++.++|+ ..   +.
T Consensus       253 ~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  332 (430)
T 2x5f_A          253 LTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKE  332 (430)
T ss_dssp             HHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHH
T ss_pred             HhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHH
Confidence            2 33444      447799998 8999999999   99998888664433    677889999999999998 43   22


Q ss_pred             -hhHHHHHHHHHHHHHHHhh
Q psy13322        175 -EELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       175 -~~~~~~l~~~~~~l~~~L~  193 (195)
                       +++.+++++++++|.+.|+
T Consensus       333 ~~~~~~~~~~~~~~l~~~L~  352 (430)
T 2x5f_A          333 IEQNIQTLKERYEVTKEVVY  352 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence             3477889999999998886

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.70  E-value=3.4e-16  Score=132.08  Aligned_cols=145  Identities=17%  Similarity=0.268  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-cccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GF-GRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~-gr~G~~~~~~~~~~~~  117 (195)
                      +++|++.+++..  .+.++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ |+ +++|. .+ ...++..
T Consensus       155 ~~~l~~~l~~~~--~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~-~~~~~~~  226 (384)
T 1bs0_A          155 VTHLARLLASPC--PGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGR-GS-CWLQKVK  226 (384)
T ss_dssp             HHHHHHHHHSCC--SSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGC-CH-HHHTTCC
T ss_pred             HHHHHHHHHhcC--CCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCC-ch-HHhcCCC
Confidence            678888887543  24789999999999998887    8999999999999999999996 32 33444 22 2445667


Q ss_pred             cchh--hhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhc--c-hhHHHHHHHHHHHHHH
Q psy13322        118 PDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIK--D-EELQYNCKQVSAQIIG  190 (195)
Q Consensus       118 pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~--~-~~~~~~l~~~~~~l~~  190 (195)
                      +|++  ++||.++.  ++|++++++++++.+....  +..+++.++++++++.++|+.++  . +++.++++++++++.+
T Consensus       227 ~di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~  304 (384)
T 1bs0_A          227 PELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRA  304 (384)
T ss_dssp             CSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEeeccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            8877  78999982  3489999999988876642  33455789999999999999876  3 5788999999999999


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       305 ~L~~  308 (384)
T 1bs0_A          305 GVQD  308 (384)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            9975

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.70  E-value=6.3e-17  Score=138.01  Aligned_cols=146  Identities=16%  Similarity=0.133  Sum_probs=113.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP-  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p-  118 (195)
                      ++.|++.++     .++++|+++++++++|.+ ++++++++|+++|++||++||+||+|+++.+.+. ..++..++ .+ 
T Consensus       164 ~~~l~~~l~-----~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~-~~~  235 (406)
T 1xi9_A          164 IDDIRKKIT-----DRTKAIAVINPNNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE-HISPGSLT-KDV  235 (406)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC-CCCHHHHC-SSS
T ss_pred             HHHHHHhhC-----cCceEEEEECCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC-CCCHHHcC-CCc
Confidence            577777765     257788898888889965 5788999999999999999999999998876333 33443333 22 


Q ss_pred             -chh--hhccccC-CCCceEEEE--ecH----HHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHH
Q psy13322        119 -DIV--TMAKGIA-NGFPMGAVV--TTT----EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSA  186 (195)
Q Consensus       119 -di~--~~sK~l~-~G~~~g~v~--~~~----~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~  186 (195)
                       +++  ++||.++ +|+++|+++  +++    ++++.+....... ++.|+++++++.++|+...+  +++.++++++++
T Consensus       236 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  314 (406)
T 1xi9_A          236 PVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRD  314 (406)
T ss_dssp             CEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred             eEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence             333  5689998 899999999  898    8888876543323 67788999999999974432  567788999999


Q ss_pred             HHHHHhhc
Q psy13322        187 QIIGYLRV  194 (195)
Q Consensus       187 ~l~~~L~~  194 (195)
                      ++.+.|++
T Consensus       315 ~l~~~L~~  322 (406)
T 1xi9_A          315 YIYKRLNE  322 (406)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998875

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.69  E-value=2.3e-16  Score=135.30  Aligned_cols=152  Identities=12%  Similarity=0.010  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCc--------cc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY--------WG  110 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~--------~~  110 (195)
                      +++.|++.+++    .++++|++....+.+|. +.+.+.+++|+++|++||++||+||+|+++.+.+...        ..
T Consensus       170 d~~~l~~~l~~----~~~~~v~l~~p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~  244 (437)
T 3g0t_A          170 LREKLESYLQT----GQFCSIIYSNPNNPTWQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPS  244 (437)
T ss_dssp             HHHHHHHHHTT----TCCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCC
T ss_pred             CHHHHHHHHhc----CCceEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhc
Confidence            57888888853    24556666555788886 5577889999999999999999999999876553211        11


Q ss_pred             ccc-cCCCcchhhhccccC-CCCceEEEEecHHHHH-H-----------------hhccccccCCCchHHHHHHHHHHHH
Q psy13322        111 FEM-HGVSPDIVTMAKGIA-NGFPMGAVVTTTEIAQ-V-----------------LTKAAHFNTFGGNPVGCVIASTVLD  170 (195)
Q Consensus       111 ~~~-~~~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~-~-----------------l~~~~~~~t~~~~p~~~~aa~aal~  170 (195)
                      +.. .+....+.++||.++ +|+++|++++++++++ .                 +.......+++.++++++++.++|+
T Consensus       245 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  324 (437)
T 3g0t_A          245 VANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLK  324 (437)
T ss_dssp             GGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHH
T ss_pred             cCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Confidence            111 222223457799999 8999999999999888 6                 6554455577889999999999998


Q ss_pred             hhc-----chhHHHHHHHHHHHHHHHhhcC
Q psy13322        171 VIK-----DEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       171 ~~~-----~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      ..+     -+++.++++++++++.+.|+++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  354 (437)
T 3g0t_A          325 ACNDGEYNFRDSVIEYGRKARIMKKMFLDN  354 (437)
T ss_dssp             HHHTTSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            764     4678899999999999998763

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.69  E-value=2.5e-16  Score=132.31  Aligned_cols=137  Identities=15%  Similarity=0.077  Sum_probs=102.5

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcchhhhccccC-CCCc
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIA-NGFP  132 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi~~~sK~l~-~G~~  132 (195)
                      ++++|++...++.+|.+ ++.+++++|.++|++||+++|+||+|+++++.|...... ...+....+.++||+++ +|++
T Consensus       146 ~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  224 (364)
T 1lc5_A          146 DLDCLFLCTPNNPTGLL-PERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLR  224 (364)
T ss_dssp             TCCEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTC
T ss_pred             CCCEEEEeCCCCCCCCC-CCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccc
Confidence            45556654457778864 678999999999999999999999999886654322211 11222333557899999 8999


Q ss_pred             eEEEE-ecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        133 MGAVV-TTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       133 ~g~v~-~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +|+++ +++++++.+....  .+++.|+++++++.++|+..+ -++..++++++++++.+.|++
T Consensus       225 ~G~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  286 (364)
T 1lc5_A          225 LGYLVNSDDAAMARMRRQQ--MPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQ  286 (364)
T ss_dssp             CEEEECCCHHHHHHHHHHS--CTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999 9999988876543  366789999999999988632 145677788889999888865

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.69  E-value=3.8e-16  Score=131.06  Aligned_cols=147  Identities=14%  Similarity=0.092  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--CCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--NGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      +++|++.+.++    ++++|+++.+++.+|.+ ++.+.+++|.++|++|  |+++|+||+|++|+..+. .......+..
T Consensus       146 ~~~l~~~l~~~----~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~  219 (367)
T 3euc_A          146 RGAMLAAMAEH----QPAIVYLAYPNNPTGNL-FDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESW-MSRLTDFGNL  219 (367)
T ss_dssp             HHHHHHHHHHH----CCSEEEEESSCTTTCCC-CCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCS-GGGGGTCTTE
T ss_pred             HHHHHHHhhcc----CCCEEEEcCCCCCCCCC-CCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccch-HHHHhhCCCE
Confidence            68888888753    45578888888888964 4778899999999999  999999999998864332 2222333444


Q ss_pred             cchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       118 pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ..+.++||...+|+++|++++++++++.+....  .+++.|+++++++.++|+..+. ++..++++++++++.+.|++
T Consensus       220 i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~  295 (367)
T 3euc_A          220 LVMRTVSKLGLAGIRLGYVAGDPQWLEQLDKVR--PPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAA  295 (367)
T ss_dssp             EEEEECCCTTSCSCCEEEEEECHHHHHHHGGGC--CSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEecchhhcccccCceeeeeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556688999338899999999999998886643  3567899999999999987322 56778889999999998875

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.69  E-value=1.7e-16  Score=135.47  Aligned_cols=152  Identities=16%  Similarity=0.232  Sum_probs=112.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC--Ccccccc-cCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD--NYWGFEM-HGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~--~~~~~~~-~~~  116 (195)
                      +++|++.+++..  .+.+++++....+.+|. +++.+.+++|.++|++||+++|+||+|+++++.+.  .+.+... .+.
T Consensus       170 ~~~l~~~l~~~~--~~~~~i~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  246 (409)
T 4eu1_A          170 LAGMLECLDKAP--EGSVILVHACAHNPTGV-DPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDM  246 (409)
T ss_dssp             HHHHHHHHHHSC--TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHHhCC--CCcEEEEECCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhh
Confidence            688888887643  25556776777888884 66788899999999999999999999999876551  0223322 245


Q ss_pred             Ccchh---hhccccC-CCCceEEE---EecHH----HHHHhhccccccCCCchHHHHHHHHHHHHhh-------c-chhH
Q psy13322        117 SPDIV---TMAKGIA-NGFPMGAV---VTTTE----IAQVLTKAAHFNTFGGNPVGCVIASTVLDVI-------K-DEEL  177 (195)
Q Consensus       117 ~pdi~---~~sK~l~-~G~~~g~v---~~~~~----i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~-------~-~~~~  177 (195)
                      .++++   ++||++| .|+++||+   +++++    +++.+.......+++.+++++.++.++|+..       + .+++
T Consensus       247 ~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  326 (409)
T 4eu1_A          247 VPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQM  326 (409)
T ss_dssp             SSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            55654   7799999 89999995   56677    5555544434455667789999998888742       1 2567


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      ++++++++++|.+.|++
T Consensus       327 ~~~~~~~~~~l~~~L~~  343 (409)
T 4eu1_A          327 SSRIAEVRKRLVSELKA  343 (409)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            78899999999998875

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.69  E-value=1.5e-16  Score=135.58  Aligned_cols=139  Identities=15%  Similarity=0.031  Sum_probs=105.8

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc----hhhhccccC-C
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD----IVTMAKGIA-N  129 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd----i~~~sK~l~-~  129 (195)
                      ++++|+++..++++|.+ ++.+++++|.++|++||+++|+||+|+++++.|........++-.+|    +.++||.+| +
T Consensus       163 ~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~  241 (400)
T 3asa_A          163 HIDILCLCSPNNPTGTV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFA  241 (400)
T ss_dssp             CCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTT
T ss_pred             CccEEEEeCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCc
Confidence            56678887888888965 67899999999999999999999999988766542222322222234    457899999 8


Q ss_pred             CCceEEEEecHHH-------HHHhhccccccCC-CchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        130 GFPMGAVVTTTEI-------AQVLTKAAHFNTF-GGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       130 G~~~g~v~~~~~i-------~~~l~~~~~~~t~-~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+|+|++++++++       ++.+.......++ +.|+++++++.++|+....+++++++++++++|.+.|++
T Consensus       242 GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~  314 (400)
T 3asa_A          242 GIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLA  314 (400)
T ss_dssp             TCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             chheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999877       5555432233344 578999999999998653467889999999999999875

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.68  E-value=6.2e-16  Score=131.37  Aligned_cols=145  Identities=18%  Similarity=0.217  Sum_probs=111.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-ccccCCCcccccccCC-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-G-FGRTGDNYWGFEMHGV-  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g-~gr~G~~~~~~~~~~~-  116 (195)
                      +++|++++++..+ +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ | +|..|. .+. ...++ 
T Consensus       164 ~~~le~~l~~~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~-~~~-~~~~~~  236 (401)
T 2bwn_A          164 VAHLRELIAADDP-AAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGA-GVA-ERDGLM  236 (401)
T ss_dssp             HHHHHHHHHHSCT-TSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSC-CHH-HHHTCG
T ss_pred             HHHHHHHHHhhcc-CCceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCc-eee-eccCcc
Confidence            6788888876532 36889999999999998877    9999999999999999999999 3 455554 222 33344 


Q ss_pred             -Ccc--hhhhccccC-CCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHHHH
Q psy13322        117 -SPD--IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQVSAQ  187 (195)
Q Consensus       117 -~pd--i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~  187 (195)
                       .++  +.++||+++ .|   |++++++++++.+....  +..+.+.++++++++.++++.+++   +++++++++++++
T Consensus       237 ~~~~i~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  313 (401)
T 2bwn_A          237 HRIDIFNGTLAKAYGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKV  313 (401)
T ss_dssp             GGCSEEEEESSSTTCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             ccCcEEEeechhhccCCC---CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence             234  448899998 45   88999998888876432  223344567899999999998865   4788999999999


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      +.+.|++
T Consensus       314 l~~~L~~  320 (401)
T 2bwn_A          314 LKMRLKA  320 (401)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998874

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.68  E-value=1e-16  Score=135.64  Aligned_cols=152  Identities=13%  Similarity=0.166  Sum_probs=107.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccC-CCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTG-DNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G-~~~~~~~~~~~~p  118 (195)
                      +++|++.+.+..  .+.+++++....+.+|. +++.+++++|+++|++||+++|+||+|+++++.| ..+.++..+...+
T Consensus       159 ~~~l~~~l~~~~--~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  235 (396)
T 2q7w_A          159 FDALINSLNEAQ--AGDVVLFHGCCHNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMH  235 (396)
T ss_dssp             HHHHHHHHTTCC--TTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHC
T ss_pred             HHHHHHHHHhCC--CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcC
Confidence            688888887542  24567777777888886 6778999999999999999999999999987653 1122333222112


Q ss_pred             c----hhhhccccC-CCCceEEEEe---cH----HHHHHhhccccccCCCchHHHHHHHHHHHHhh------cc--hhHH
Q psy13322        119 D----IVTMAKGIA-NGFPMGAVVT---TT----EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI------KD--EELQ  178 (195)
Q Consensus       119 d----i~~~sK~l~-~G~~~g~v~~---~~----~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~------~~--~~~~  178 (195)
                      |    +.++||++| +|+|+|++++   ++    ++++.+.......+.+.|+++++++.++|+..      .+  +++.
T Consensus       236 ~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~  315 (396)
T 2q7w_A          236 KELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMR  315 (396)
T ss_dssp             SCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-
T ss_pred             CcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence            2    347799999 8999999997   55    35454443222223345899999999998754      11  4566


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++++++++++.+.|++
T Consensus       316 ~~~~~~~~~l~~~L~~  331 (396)
T 2q7w_A          316 QRIQRMRQLFVNTLQE  331 (396)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7788889999888865

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.67  E-value=5.8e-16  Score=129.75  Aligned_cols=144  Identities=14%  Similarity=0.056  Sum_probs=109.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|+++.+++.+|.+. +.+.+.+|++.|++ |+++|+||+|+++++ |. +.+.......++
T Consensus       145 ~~~l~~~i~-----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~-~~~~~~~~~~~~  215 (363)
T 3ffh_A          145 LEGMLNAID-----EKTTIVWICNPNNPTGNYI-ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQ-PEKHEKLVRTYK  215 (363)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SC-CCCCGGGGGTCT
T ss_pred             HHHHHHhcc-----cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-cc-ccCHHHHhhcCC
Confidence            567777664     3678899988899999755 55667666666666 999999999998877 64 333322222233


Q ss_pred             ----hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhh
Q psy13322        120 ----IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 ----i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~  193 (195)
                          +.++||.+| +|+++|++++++++++.+.....  +++.|+++++++.++|+..+. ++..++++++++++.+.|+
T Consensus       216 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~  293 (363)
T 3ffh_A          216 NLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP--PFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAK  293 (363)
T ss_dssp             TEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC--SCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence                447799999 89999999999999988876543  678899999999999985432 5677888899999998887


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       294 ~  294 (363)
T 3ffh_A          294 R  294 (363)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.67  E-value=2e-16  Score=135.93  Aligned_cols=138  Identities=14%  Similarity=0.090  Sum_probs=105.0

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CC---CcchhhhccccC-C
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GV---SPDIVTMAKGIA-N  129 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~---~pdi~~~sK~l~-~  129 (195)
                      ++++|++....+++|. +++.++|++|+++|++||++||+||+|+++.+.+. ..++..+ +.   ...+.++||++| +
T Consensus       198 ~~~~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~  275 (432)
T 3ei9_A          198 RTDIIFFCSPNNPTGA-AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN-PRSIFEIPGAEEVAMETASFSNYAGFT  275 (432)
T ss_dssp             CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC-CSSGGGSTTGGGTEEEEEESHHHHCTT
T ss_pred             CCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC-CCChhhcCCCCCeEEEEecchhccCCc
Confidence            5667888788888886 56788899999999999999999999998866544 3333322 21   222457899999 9


Q ss_pred             CCceEEEEecHHH--------HHHhhccccccCCCchHHHHHHHHHHHHh-hc--chhHHHHHHHHHHHHHHHhhc
Q psy13322        130 GFPMGAVVTTTEI--------AQVLTKAAHFNTFGGNPVGCVIASTVLDV-IK--DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       130 G~~~g~v~~~~~i--------~~~l~~~~~~~t~~~~p~~~~aa~aal~~-~~--~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+++|++++++++        ++.+.......+++.++++++++.++++. ..  .+++.+++++++++|.+.|++
T Consensus       276 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  351 (432)
T 3ei9_A          276 GVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTS  351 (432)
T ss_dssp             TTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887        66665543344556789999999999863 22  256788899999999999875

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.67  E-value=6.5e-16  Score=129.03  Aligned_cols=144  Identities=17%  Similarity=0.107  Sum_probs=108.4

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI  120 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi  120 (195)
                      ++|++.+.+      +++|++....+.+|. +++.+++++|+++|++||+++|+||+|+++++. .........+..+++
T Consensus       136 ~~l~~~l~~------~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~  207 (361)
T 3ftb_A          136 EDIISKIDD------VDSVIIGNPNNPNGG-LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCL  207 (361)
T ss_dssp             HHHHHHTTT------CSEEEEETTBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSE
T ss_pred             HHHHHhccC------CCEEEEeCCCCCCCC-CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCE
Confidence            677777653      446677777888886 557788999999999999999999999988765 212122333333343


Q ss_pred             ---hhhccccC-CCCceEEEE-ecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        121 ---VTMAKGIA-NGFPMGAVV-TTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       121 ---~~~sK~l~-~G~~~g~v~-~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                         .++||.++ +|+++|+++ +++++++.+....  .+++.|+++++++.++|+..+. ++..++++++++++.+.|++
T Consensus       208 i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~  285 (361)
T 3ftb_A          208 FIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQ--NPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNK  285 (361)
T ss_dssp             EEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTS--CTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               36789999 899999998 8899998887643  3567899999999999985321 56778888899999888865

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.67  E-value=4.9e-16  Score=131.72  Aligned_cols=148  Identities=16%  Similarity=0.193  Sum_probs=110.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|++....+.+|. +++.+.+++|.++|++||++||+||+|+.+.+.|. +.++..+.-..+
T Consensus       154 ~~~l~~~l~-----~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~  226 (385)
T 1b5p_A          154 PERVRRAIT-----PRTKALVVNSPNNPTGA-VYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE-HFSPGRVAPEHT  226 (385)
T ss_dssp             HHHHHTTCC-----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGGGTCTTTE
T ss_pred             HHHHHHhcC-----CCCEEEEEeCCCCCCCC-CcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCCHHHcCCCCE
Confidence            466666554     25667777666777885 55789999999999999999999999998766552 333332211112


Q ss_pred             --hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh---hcc--hhHHHHHHHHHHHHHHH
Q psy13322        120 --IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV---IKD--EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       120 --i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~---~~~--~~~~~~l~~~~~~l~~~  191 (195)
                        +.++||.++ .|+++|++++++++++.+.......+++.+++++.++.++|+.   ..+  ++++++++++++++.+.
T Consensus       227 i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  306 (385)
T 1b5p_A          227 LTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEG  306 (385)
T ss_dssp             EEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEechhhcCCcccceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence              337789999 8999999999999988887654455667789999999999974   322  46778888999999888


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       307 L~~  309 (385)
T 1b5p_A          307 LTA  309 (385)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.49  E-value=4.4e-18  Score=144.56  Aligned_cols=151  Identities=14%  Similarity=0.154  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc---c--
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE---M--  113 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~---~--  113 (195)
                      +++.|++.+++    .++++|++...++++|.+ ++.+++++|+++|++||++||+||+|+++++.|..+..+.   .  
T Consensus       152 d~~~l~~~l~~----~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  226 (392)
T 3b1d_A          152 DFEQLENDIVE----NDVKLYLLCNPHNPGGRV-WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDF  226 (392)
Confidence            46677777753    245678888888888864 6678899999999999999999999999987764222221   1  


Q ss_pred             cCCCcchhhhccccC-CCCceEEEEecH-HHHHHhhccccccCC-CchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322        114 HGVSPDIVTMAKGIA-NGFPMGAVVTTT-EIAQVLTKAAHFNTF-GGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI  188 (195)
Q Consensus       114 ~~~~pdi~~~sK~l~-~G~~~g~v~~~~-~i~~~l~~~~~~~t~-~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l  188 (195)
                      .+..+.+.++||+++ +|+|+|++++++ ++++.+.......++ +.|+++++++.++|+..++  +++++++++++++|
T Consensus       227 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  306 (392)
T 3b1d_A          227 KDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFA  306 (392)
Confidence            233455678899999 899999999976 488888766554544 4689999999999975322  45667778888888


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|++
T Consensus       307 ~~~l~~  312 (392)
T 3b1d_A          307 VEYFAQ  312 (392)
Confidence            777754

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.67  E-value=1.5e-16  Score=134.72  Aligned_cols=152  Identities=17%  Similarity=0.197  Sum_probs=108.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-Cccccccc-CCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-NYWGFEMH-GVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~~~~-~~~  117 (195)
                      ++.|++.+++..  .+.+++++....+.+|. +++.+++++|+++|++||+++|+||+|+++++.|. .+.++..+ ...
T Consensus       156 ~~~l~~~l~~~~--~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  232 (394)
T 2ay1_A          156 FEGMKADLAAAK--KGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRI  232 (394)
T ss_dssp             HHHHHHHHHTCC--TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCC--CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcC
Confidence            678888887542  24667788888888896 67889999999999999999999999999876531 12223222 123


Q ss_pred             cc---hhhhccccC-CCCceEEEEe---cHHHHHHhhcc---ccccCC-CchHHHHHHHHHHHHhh------c--chhHH
Q psy13322        118 PD---IVTMAKGIA-NGFPMGAVVT---TTEIAQVLTKA---AHFNTF-GGNPVGCVIASTVLDVI------K--DEELQ  178 (195)
Q Consensus       118 pd---i~~~sK~l~-~G~~~g~v~~---~~~i~~~l~~~---~~~~t~-~~~p~~~~aa~aal~~~------~--~~~~~  178 (195)
                      ++   +.++||+++ +|+|+|++++   ++++++.+...   ....++ +.|+++++++.++|+..      .  .+++.
T Consensus       233 ~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~  312 (394)
T 2ay1_A          233 PEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVR  312 (394)
T ss_dssp             SSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            34   337789999 8999999998   66654433221   112333 34889999999998754      1  25677


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      +++++++++|.+.|++
T Consensus       313 ~~~~~~~~~l~~~L~~  328 (394)
T 2ay1_A          313 SGMLRLREQLAGELRD  328 (394)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8888899999888764

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.67  E-value=4.3e-16  Score=129.95  Aligned_cols=147  Identities=16%  Similarity=0.079  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cc---c-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EM---H-  114 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~---~-  114 (195)
                      +++|++.+.++   .++++|+++...+.+|.+. +.+.+++|+++| +||+++|+||+|+++++.|. .... ..   . 
T Consensus       129 ~~~l~~~l~~~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~  202 (354)
T 3ly1_A          129 IEGLKAAVAAY---SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPR-FRSISPMITQGA  202 (354)
T ss_dssp             HHHHHHHHHTC---SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT-CCCSHHHHHTTC
T ss_pred             HHHHHHHhccC---CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccc-cCCHHHHhhhcC
Confidence            68888888753   2677888888888888655 666788888888 79999999999998877664 2222 11   1 


Q ss_pred             CCCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHh
Q psy13322        115 GVSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       115 ~~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L  192 (195)
                      +....+.++||.+| +|+++|++++++++++.+......  ++.|+++++++.++|+..+. ++..++++++.+++.+.|
T Consensus       203 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l  280 (354)
T 3ly1_A          203 ENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG--EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKAL  280 (354)
T ss_dssp             SSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTTC--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            22233457789999 899999999999999988765433  67899999999999986532 567788889999998888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       281 ~~  282 (354)
T 3ly1_A          281 ED  282 (354)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.66  E-value=1.4e-15  Score=128.17  Aligned_cols=144  Identities=13%  Similarity=0.083  Sum_probs=109.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccC-CC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHG-VS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~-~~  117 (195)
                      ++.|++.+++.    ++++|+++++++++|.+.+    ++++.++|+.+++++|+||+|+++++... .... ..++ ..
T Consensus       153 ~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~  223 (369)
T 3cq5_A          153 MDVALEEIRAK----QPDIVFVTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPS-ATTLLEKYPTKL  223 (369)
T ss_dssp             HHHHHHHHHHH----CCSEEEEESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCC-GGGGTTTCTTTE
T ss_pred             HHHHHHHhhcc----CCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcc-hHHHHhhCCCCE
Confidence            67888888742    4568889999999998775    66777788888899999999998765322 2222 2233 33


Q ss_pred             cchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        118 PDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       118 pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ..+.++||+++ +|+++|++++++++++.+....  .+++.|+++++++.++|+..+. ++..++++++++++.+.|++
T Consensus       224 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  300 (369)
T 3cq5_A          224 VVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVR--LPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEE  300 (369)
T ss_dssp             EEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTS--CTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEechHhcCCcccceEEEEeCHHHHHHHHHcC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45668899998 8999999999999988887543  3456899999999999986432 56778888999999888864

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.65  E-value=1.5e-15  Score=128.79  Aligned_cols=145  Identities=17%  Similarity=0.167  Sum_probs=111.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc--cccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF--GRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~--gr~G~~~~~~~~~~~~  117 (195)
                      +++|++.+++..+ +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.+  ++.+. .. .+.+++.
T Consensus       159 ~~~l~~~l~~~~~-~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~-~~-~~~~~~~  231 (398)
T 3a2b_A          159 MEDLRAKLSRLPE-DSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGA-GT-ASHFGLN  231 (398)
T ss_dssp             HHHHHHHHHTSCS-SSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGC-CH-HHHHTCG
T ss_pred             HHHHHHHHHhhcc-CCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCC-ch-HhhcCCC
Confidence            6788888886532 26889999999999998876    999999999999999999999743  33333 11 2334553


Q ss_pred             --cchh--hhccccC-CCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHH
Q psy13322        118 --PDIV--TMAKGIA-NGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQII  189 (195)
Q Consensus       118 --pdi~--~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~  189 (195)
                        +|++  ++||.++ .|   |++++++++++.+....  +..+...++..++++.++|+.++. ++++++++++++++.
T Consensus       232 ~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~  308 (398)
T 3a2b_A          232 DDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAK  308 (398)
T ss_dssp             GGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred             cCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence              5776  7799998 35   89999999988887642  445556677777788888887643 578899999999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       309 ~~L~~  313 (398)
T 3a2b_A          309 AQLLD  313 (398)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99875

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.65  E-value=8.7e-16  Score=131.03  Aligned_cols=149  Identities=12%  Similarity=0.125  Sum_probs=105.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC----CcccccccC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD----NYWGFEMHG  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~----~~~~~~~~~  115 (195)
                      ++.|++.+.+     ++++|++....+++|. +++.+++++|.++|++||++||+||+|+++.+.|.    .+..+..++
T Consensus       167 ~~~l~~~l~~-----~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  240 (416)
T 1bw0_A          167 LDEIRRLKDD-----KTKLLIVTNPSNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE  240 (416)
T ss_dssp             HHHHHHHCCT-----TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC
T ss_pred             HHHHHHHhcc-----CCeEEEEeCCCCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHcc
Confidence            5777776652     4445555555778886 46789999999999999999999999999877664    222222222


Q ss_pred             CCcc---hhhhccccC-CCCceEEEEecHH--HHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHH
Q psy13322        116 VSPD---IVTMAKGIA-NGFPMGAVVTTTE--IAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQ  183 (195)
Q Consensus       116 ~~pd---i~~~sK~l~-~G~~~g~v~~~~~--i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~  183 (195)
                      ..++   +.++||+++ +|+++|+++++++  +++.+...   ....+++.|+++++++.++|+...+   ++..+++++
T Consensus       241 ~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  320 (416)
T 1bw0_A          241 TTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEE  320 (416)
T ss_dssp             CSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            2222   337799987 7899999998763  33333211   1224667899999999999985422   467788999


Q ss_pred             HHHHHHHHhhc
Q psy13322        184 VSAQIIGYLRV  194 (195)
Q Consensus       184 ~~~~l~~~L~~  194 (195)
                      +++++.+.|++
T Consensus       321 ~~~~l~~~L~~  331 (416)
T 1bw0_A          321 SAMYLYNHIGE  331 (416)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.64  E-value=2.4e-15  Score=126.45  Aligned_cols=144  Identities=17%  Similarity=0.178  Sum_probs=107.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~p  118 (195)
                      +++|++.+.      ++++|++....+.+|.+ .+.+++++|.++|+ ||+++|+||+|++++.... .... ..++...
T Consensus       137 ~~~l~~~i~------~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~-~~~~~~~~~~~i  207 (356)
T 1fg7_A          137 LQGISDKLD------GVKVVYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQAS-LAGWLAEYPHLA  207 (356)
T ss_dssp             HHHHHTSCT------TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGC-SGGGTTTCTTEE
T ss_pred             HHHHHHHhc------CCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCc-HHHHHhhCCCEE
Confidence            455555442      45678888888888965 57899999999999 9999999999998863222 2222 2122223


Q ss_pred             chhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK---DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~---~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .+.++||++| +|+|+|++++++++++.+....  .+++.|+++++++.++|+...   -++..+++++++++|.+.|++
T Consensus       208 ~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  285 (356)
T 1fg7_A          208 ILRTLSKAFALAGLRCGFTLANEEVINLLMKVI--APYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE  285 (356)
T ss_dssp             EEEESSSTTCCGGGCCEEEEECHHHHHHHHHHS--CSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchHhhcCchhhhEEEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3558899999 8999999999999988886543  345788999999999997543   356678888999999988875

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.63  E-value=9.6e-16  Score=128.31  Aligned_cols=144  Identities=9%  Similarity=0.078  Sum_probs=109.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.++++...+++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.+ ..+.   ....++  +|
T Consensus       132 ~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~~---~~~~~~--~d  201 (371)
T 2e7j_A          132 PENFAQTIEETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMPV---SLKEIG--AD  201 (371)
T ss_dssp             HHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBCC---CHHHHT--CS
T ss_pred             HHHHHHHHHhhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCCC---ChhhcC--CC
Confidence            6788888876532136889999999999998877    799999999999999999999853 3321   222233  56


Q ss_pred             hh--hhccccCCCCceEEEEecHHHHHH-hhcccc--cc-----CCCchHHHHHHHHHHHHhhcchhHHHHH--HHHHHH
Q psy13322        120 IV--TMAKGIANGFPMGAVVTTTEIAQV-LTKAAH--FN-----TFGGNPVGCVIASTVLDVIKDEELQYNC--KQVSAQ  187 (195)
Q Consensus       120 i~--~~sK~l~~G~~~g~v~~~~~i~~~-l~~~~~--~~-----t~~~~p~~~~aa~aal~~~~~~~~~~~l--~~~~~~  187 (195)
                      ++  ++||+++++.++|++++++++++. +.....  ..     +++.++.+++++.++++.+.. ++.+++  ++++++
T Consensus       202 i~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~  280 (371)
T 2e7j_A          202 FIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARR  280 (371)
T ss_dssp             EEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHH
T ss_pred             EEEecCCcCCCCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            55  558999977799999999988776 654432  22     445678888888899988765 677888  899999


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      +.+.|++
T Consensus       281 l~~~L~~  287 (371)
T 2e7j_A          281 FAAEMEK  287 (371)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.63  E-value=1.8e-15  Score=129.09  Aligned_cols=152  Identities=14%  Similarity=0.163  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccC--CCccccccc-CC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTG--DNYWGFEMH-GV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G--~~~~~~~~~-~~  116 (195)
                      +++|++.+.+..  ...+++++....+.+|. +++.+.+++|.++|++||+++|+||+|+++++.|  ..+.++..+ ..
T Consensus       163 ~~~l~~~l~~~~--~~~~~~~~~~p~nPtG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
T 1yaa_A          163 LNGFLNAIQKAP--EGSIFVLHSCAHNPTGL-DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK  239 (412)
T ss_dssp             HHHHHHHHHHSC--TTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc
Confidence            678888887542  13445555777788885 6678899999999999999999999999887654  112233221 12


Q ss_pred             Cc---c---hhhhccccCC-CCceEEEE--e-----cHH----HHHHhhccccccCCCchHHHHHHHHHHHHhhc-----
Q psy13322        117 SP---D---IVTMAKGIAN-GFPMGAVV--T-----TTE----IAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-----  173 (195)
Q Consensus       117 ~p---d---i~~~sK~l~~-G~~~g~v~--~-----~~~----i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-----  173 (195)
                      .+   +   +.++||.++. |+|+|+++  +     +++    +++.+.......+.+.++++++++.++|+...     
T Consensus       240 ~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  319 (412)
T 1yaa_A          240 LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQW  319 (412)
T ss_dssp             TTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHH
T ss_pred             CCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHH
Confidence            23   2   3377899995 99999998  7     566    77766653333344558899999999998652     


Q ss_pred             ---chhHHHHHHHHHHHHHHHhhc
Q psy13322        174 ---DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       174 ---~~~~~~~l~~~~~~l~~~L~~  194 (195)
                         -++++++++++++++.+.|++
T Consensus       320 ~~~~~~~~~~~~~~~~~l~~~L~~  343 (412)
T 1yaa_A          320 HKDMVTMSSRITKMRHALRDHLVK  343 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence               256778888999999988864

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.62  E-value=2.7e-15  Score=128.59  Aligned_cols=152  Identities=14%  Similarity=0.207  Sum_probs=109.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-Cccccccc-CCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-NYWGFEMH-GVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~~~~-~~~  117 (195)
                      ++.|++.+++..  .+.++|++...++.+|. .++.+.+++|.++|++||+++|+||+|++|++.+. ...+...+ +..
T Consensus       182 ~~~l~~~l~~~~--~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  258 (420)
T 4f4e_A          182 FDGMLAALNGYE--PGTIVVLHACCHNPTGV-DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAAN  258 (420)
T ss_dssp             HHHHHHHHTTCC--TTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC--CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcC
Confidence            688889888653  36788999999999996 56788899999999999999999999999977542 12222221 223


Q ss_pred             cc---hhhhccccC-CCCceEEEEe---cHHHHHHhhc----cccccCCCchHHHHHHHHHHHHhh------c--chhHH
Q psy13322        118 PD---IVTMAKGIA-NGFPMGAVVT---TTEIAQVLTK----AAHFNTFGGNPVGCVIASTVLDVI------K--DEELQ  178 (195)
Q Consensus       118 pd---i~~~sK~l~-~G~~~g~v~~---~~~i~~~l~~----~~~~~t~~~~p~~~~aa~aal~~~------~--~~~~~  178 (195)
                      ++   +.++||.++ .|||+|++++   ++++++.+..    .....+.+.+++++.++.++|+..      +  -++++
T Consensus       259 ~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  338 (420)
T 4f4e_A          259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMR  338 (420)
T ss_dssp             CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            33   336789999 8999999864   4565544322    112334455777888777777642      1  15677


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      +++++++++|.+.|++
T Consensus       339 ~~~~~~~~~l~~~L~~  354 (420)
T 4f4e_A          339 DRIRAMRNGLVERLKA  354 (420)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8899999999998875

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.62  E-value=8.8e-16  Score=131.23  Aligned_cols=154  Identities=12%  Similarity=0.078  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHH------HcCCEEEEeccccCccccCCCcccc-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIK------SNNGLFISDEVQTGFGRTGDNYWGF-  111 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~------~~~~llI~DEv~~g~gr~G~~~~~~-  111 (195)
                      ++.|++.+.+.......++|++++. ++++|. +++.+.+++|+++|+      +||+++|+||+|.+|++.|.....+ 
T Consensus       164 ~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~  242 (418)
T 3rq1_A          164 HEAFQNRVNELAAKQTNVVVIFNTPGNNPTGY-SIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFF  242 (418)
T ss_dssp             HHHHHHHHHHHHHHCSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGG
T ss_pred             HHHHHHHHHHhhccCCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHH
Confidence            6778887775311014457777766 888996 556777999999999      8999999999999998765311122 


Q ss_pred             -cccCCCcc---hh--hhccccC-CCCceEEEEe---cHHHHHHhhcccc---c-cCCCchHHHHHHHHHHHHhhc----
Q psy13322        112 -EMHGVSPD---IV--TMAKGIA-NGFPMGAVVT---TTEIAQVLTKAAH---F-NTFGGNPVGCVIASTVLDVIK----  173 (195)
Q Consensus       112 -~~~~~~pd---i~--~~sK~l~-~G~~~g~v~~---~~~i~~~l~~~~~---~-~t~~~~p~~~~aa~aal~~~~----  173 (195)
                       ...++.++   ++  ++||+++ +|+++|++++   ++++++.+.....   . .....++++++++.++|+..+    
T Consensus       243 ~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  322 (418)
T 3rq1_A          243 NKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKE  322 (418)
T ss_dssp             GGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHH
Confidence             22345566   22  6799999 8999999999   8999888765431   1 123568888888888886431    


Q ss_pred             --c--hhHHHHHHHHHHHHHHHhhc
Q psy13322        174 --D--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       174 --~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                        +  .+++++++++++++.+.|++
T Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~L~~  347 (418)
T 3rq1_A          323 YEAERNCYYQLIRDRADIFKQEAAQ  347 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              1  35667888889998888864

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.62  E-value=2.3e-15  Score=129.31  Aligned_cols=149  Identities=10%  Similarity=0.024  Sum_probs=109.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHH-HcCCEEEEeccccC--ccccCCCcccc-c--
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIK-SNNGLFISDEVQTG--FGRTGDNYWGF-E--  112 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~-~~~~llI~DEv~~g--~gr~G~~~~~~-~--  112 (195)
                      ++.|++.+.+    .++++|++.| .++.+|. +++.+++++|.++|+ +||+++|+||+|..  |+..|..+.++ .  
T Consensus       167 ~~~l~~~l~~----~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~  241 (422)
T 3d6k_A          167 MGVVRELVKD----PQVKGMWTVPVFGNPTGV-TFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFA  241 (422)
T ss_dssp             HHHHHHHHTS----TTEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHH
T ss_pred             HHHHHHHHhc----CCCeEEEEcCCCCCCCCC-CCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHh
Confidence            6778887753    2677888555 5667885 668899999999999 99999999999974  65444322222 1  


Q ss_pred             ----ccCCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh---cc--hhHHHHHHH
Q psy13322        113 ----MHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI---KD--EELQYNCKQ  183 (195)
Q Consensus       113 ----~~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~---~~--~~~~~~l~~  183 (195)
                          ..+....+.+|||..++|+++||+++++++++.+.......+++.|+++++++.++|+..   .+  +++++.+++
T Consensus       242 ~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~  321 (422)
T 3d6k_A          242 QAAGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAP  321 (422)
T ss_dssp             HHTTCTTCEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCCcEEEEcChhhhcCcccceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence                123344566889996589999999999999988877655567788999999999998752   11  345666777


Q ss_pred             HHHHHHHHhh
Q psy13322        184 VSAQIIGYLR  193 (195)
Q Consensus       184 ~~~~l~~~L~  193 (195)
                      +++++.+.|+
T Consensus       322 ~~~~l~~~L~  331 (422)
T 3d6k_A          322 KFERVLEILD  331 (422)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777764

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.62  E-value=4.6e-15  Score=124.71  Aligned_cols=142  Identities=13%  Similarity=0.098  Sum_probs=108.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+++.    ++++|+++++++.+|.+.+    +++|+++|++||++||+||+|+ +|  +. .+....+  .+|
T Consensus       137 ~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~-~g--~~-~~~~~~~--~~d  202 (393)
T 3kgw_A          137 LQEVEEGLAQH----KPVLLFLVHGESSTGVVQP----LDGFGELCHRYQCLLLVDSVAS-LG--GV-PIYMDQQ--GID  202 (393)
T ss_dssp             HHHHHHHHHHH----CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-TT--TS-CCCTTTT--TCC
T ss_pred             HHHHHHHHhhC----CCcEEEEeccCCcchhhcc----HHHHHHHHHHcCCEEEEECCcc-cc--Cc-ccchhhc--CCC
Confidence            68888888853    5668999999999998776    8999999999999999999998 33  11 2222222  346


Q ss_pred             hhhh--ccccCCCCceEEEEecHHHHHHhhcccc-----------------------ccCCCchHHHHHHHHHHHHhhcc
Q psy13322        120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTKAAH-----------------------FNTFGGNPVGCVIASTVLDVIKD  174 (195)
Q Consensus       120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~~-----------------------~~t~~~~p~~~~aa~aal~~~~~  174 (195)
                      ++++  +|+++++.++|++++++++++.+.....                       ..+++.++.+++++.++++.+.+
T Consensus       203 ~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~  282 (393)
T 3kgw_A          203 IMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAE  282 (393)
T ss_dssp             EEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            6655  4999866679999999999888764321                       11335578888888899987654


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhcC
Q psy13322        175 ---EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       175 ---~~~~~~l~~~~~~l~~~L~~l  195 (195)
                         +++.++++++++++.+.|+++
T Consensus       283 ~~~~~~~~~~~~~~~~l~~~L~~~  306 (393)
T 3kgw_A          283 QGLENCWRRHREATAHLHKHLQEM  306 (393)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc
Confidence               677899999999999998753

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.61  E-value=1.8e-15  Score=128.16  Aligned_cols=146  Identities=12%  Similarity=0.086  Sum_probs=105.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH------cCCEEEEeccccCccccCCCcccc-c
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS------NNGLFISDEVQTGFGRTGDNYWGF-E  112 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~------~~~llI~DEv~~g~gr~G~~~~~~-~  112 (195)
                      +++|++.+.     .++++|++...++.+|. +++.+.+++|+++|++      ||++||+||+|+++.+.|...... .
T Consensus       162 ~~~l~~~l~-----~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~  235 (398)
T 3ele_A          162 FDALEERIN-----AHTRGVIINSPNNPSGT-VYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK  235 (398)
T ss_dssp             HHHHHHTCC-----TTEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred             HHHHHHHhC-----cCCCEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh
Confidence            567777664     36778888888888896 5577889999999999      999999999999988777422111 2


Q ss_pred             ccCCCcchhhhccccC-CCCceEEEEecHHH------HHHhhccc-cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHH
Q psy13322        113 MHGVSPDIVTMAKGIA-NGFPMGAVVTTTEI------AQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQV  184 (195)
Q Consensus       113 ~~~~~pdi~~~sK~l~-~G~~~g~v~~~~~i------~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~  184 (195)
                      ..+....+.++||+++ +|+++|++++++++      .+.+.... ...+++.++++++++.++++.   .+..++++++
T Consensus       236 ~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~  312 (398)
T 3ele_A          236 YYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGA---TGDINAYKEN  312 (398)
T ss_dssp             TCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTC---CCCHHHHHHH
T ss_pred             hcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcC---HHHHHHHHHH
Confidence            2233344557899999 99999999998873      33333222 223556677888777666653   2356788899


Q ss_pred             HHHHHHHhhc
Q psy13322        185 SAQIIGYLRV  194 (195)
Q Consensus       185 ~~~l~~~L~~  194 (195)
                      ++++.+.|++
T Consensus       313 ~~~l~~~L~~  322 (398)
T 3ele_A          313 RDLLYEGLTR  322 (398)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988864

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.60  E-value=4e-15  Score=129.13  Aligned_cols=152  Identities=13%  Similarity=0.172  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC--Cccccccc-CC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD--NYWGFEMH-GV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~--~~~~~~~~-~~  116 (195)
                      ++.|++.+++..  .+.+++++....+.+|. .++.+.+++|.++|++||+++|+||+|.+|++.+.  ..++...+ +.
T Consensus       189 ~e~l~~~l~~~~--~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~  265 (448)
T 3meb_A          189 FSNTKKDIQSAP--EKSIFLFHACAHNPSGI-DFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDA  265 (448)
T ss_dssp             HHHHHHHHHHSC--TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHT
T ss_pred             HHHHHHHHHhCC--CCcEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhc
Confidence            688888888653  24667777778888886 56788899999999999999999999999876541  11222222 23


Q ss_pred             Ccc---hhhhccccC-CCCceEEE--Ee--------c-H----HHHHHhhccccccCCCchHHHHHHHHHHHHhhc----
Q psy13322        117 SPD---IVTMAKGIA-NGFPMGAV--VT--------T-T----EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK----  173 (195)
Q Consensus       117 ~pd---i~~~sK~l~-~G~~~g~v--~~--------~-~----~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~----  173 (195)
                      .++   +.++||.+| .|+++|++  ++        + +    ++++.+.......+.+.+++++.++.++|+..+    
T Consensus       266 ~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~  345 (448)
T 3meb_A          266 GVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQM  345 (448)
T ss_dssp             TCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHH
T ss_pred             CCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHH
Confidence            344   447799999 89999998  66        4 4    555555544344555667888888888876531    


Q ss_pred             ----chhHHHHHHHHHHHHHHHhhc
Q psy13322        174 ----DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       174 ----~~~~~~~l~~~~~~l~~~L~~  194 (195)
                          -+++++++++++++|.+.|++
T Consensus       346 ~~~~~~~~~~~~~~~r~~l~~~L~~  370 (448)
T 3meb_A          346 FYDNVKEMSARIHRMRSLLHASLAK  370 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                256778899999999998875

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.60  E-value=6.9e-15  Score=124.79  Aligned_cols=140  Identities=12%  Similarity=0.063  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++.|++.++     .++++|+++++++++|.+.+    +++|+++|++||+++|+||+|+++.+. . .  . .++...
T Consensus       126 d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~-~-~--~-~~~~di  191 (386)
T 1cs1_A          126 DEQALRAALA-----EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ-N-P--L-ALGADL  191 (386)
T ss_dssp             CHHHHHHHHH-----TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC-C-G--G-GGTCSE
T ss_pred             CHHHHHHhhc-----cCCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC-C-c--c-ccCceE
Confidence            3678888886     25678999999999998886    999999999999999999999976432 2 1  1 223333


Q ss_pred             chhhhccccC-CCCce-EEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMAKGIA-NGFPM-GAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~sK~l~-~G~~~-g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .+.+++|+++ +|.++ |++++++ ++++.+.......+.+.+++++++++++++.+  ++..+++.++.+.+.+.|++
T Consensus       192 ~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~  268 (386)
T 1cs1_A          192 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTL--VPRMELAQRNAQAIVKYLQT  268 (386)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHhc
Confidence            3447789998 45665 9999986 78887766544445567899888888888765  23455566667776666643

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.60  E-value=7.6e-15  Score=123.03  Aligned_cols=130  Identities=15%  Similarity=0.167  Sum_probs=101.3

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcchhhhccccC-CCCceE
Q psy13322         57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIA-NGFPMG  134 (195)
Q Consensus        57 aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi~~~sK~l~-~G~~~g  134 (195)
                      ++|+++.+++++|.+.+    ++++.++|+++|+++|+||+|++|+..+  .... ...+....+.++||+++ +|+++|
T Consensus       151 ~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~i~~~s~sK~~g~~G~r~G  224 (360)
T 3hdo_A          151 KVFFLTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESN--ALELVRRHENVVVTRTLSKSYSLAGMRIG  224 (360)
T ss_dssp             SEEEEESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCC--CTHHHHHCSSEEEEEESTTTTSCTTSCCE
T ss_pred             CEEEEeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcc--hhHHhccCCCEEEEecchHhhcCCcccee
Confidence            37778888899998877    7788999999999999999999873222  2222 22333344557899998 899999


Q ss_pred             EEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        135 AVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       135 ~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++++++++.+....  .+++.|+++++++.++|+..+. ++.+++++++++++.+.|++
T Consensus       225 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  283 (360)
T 3hdo_A          225 LAIARPEVIAALDKIR--DHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRS  283 (360)
T ss_dssp             EEECCHHHHHHHHHHS--CSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEeeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998887643  3467899999999999986332 56778899999999998875

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.60  E-value=2.1e-14  Score=120.60  Aligned_cols=142  Identities=15%  Similarity=0.115  Sum_probs=108.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+++.   .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...   .....  ..+|
T Consensus       134 ~~~l~~~l~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~--~~~d  200 (386)
T 2dr1_A          134 PEDLDDALRKN---PDVEAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSA-MGGAD---IKFDK--WGLD  200 (386)
T ss_dssp             HHHHHHHHHHC---TTCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTBC---CCTTT--TTCS
T ss_pred             HHHHHHHHhcC---CCCcEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccc-ccCcc---ccccc--cCCc
Confidence            67888888653   36778999999999998876    8999999999999999999998 33221   12222  2457


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhc----------------c--ccccCCCchHHHHHHHHHHHHhhcc----h
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTK----------------A--AHFNTFGGNPVGCVIASTVLDVIKD----E  175 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~----------------~--~~~~t~~~~p~~~~aa~aal~~~~~----~  175 (195)
                      ++++|  |+++++..+|++++++++++.+..                .  ....+++.++++++++.++|+.+.+    +
T Consensus       201 i~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~  280 (386)
T 2dr1_A          201 VVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKE  280 (386)
T ss_dssp             EEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred             EEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHH
Confidence            77665  999955458999999998877632                1  1233556788999999999987743    4


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++.++++++++++.+.|++
T Consensus       281 ~~~~~~~~~~~~l~~~L~~  299 (386)
T 2dr1_A          281 KWLEMYEKRAKMVREGVRE  299 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999875

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.59  E-value=5e-15  Score=124.08  Aligned_cols=148  Identities=11%  Similarity=0.044  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc--cCCCcccc-cc-
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR--TGDNYWGF-EM-  113 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr--~G~~~~~~-~~-  113 (195)
                      -++++|++.+.     .++++|+++...+.+|.+. +.+.+.+|+++| ++|+++|+||+|+++.+  .|....+. .. 
T Consensus       141 ~d~~~l~~~l~-----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  213 (365)
T 3get_A          141 DEFKKLYETHK-----DEIKLIFLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELI  213 (365)
T ss_dssp             HHHHHHHHHTT-----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHH
T ss_pred             CCHHHHHHHhC-----CCCCEEEEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHh
Confidence            45777877775     3678888888888889755 666788888877 67999999999997763  33212222 11 


Q ss_pred             --cCCCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHH
Q psy13322        114 --HGVSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQII  189 (195)
Q Consensus       114 --~~~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~  189 (195)
                        .+....+.++||.+| +|+++|++++++++++.+.....  +++.|+++++++.++|+..+. ++..++++++++++.
T Consensus       214 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~  291 (365)
T 3get_A          214 KEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRA--PFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYK  291 (365)
T ss_dssp             HHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSC--TTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcC--CCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence              122223447899998 89999999999999888876433  356899999999999985432 567788889999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       292 ~~l~~  296 (365)
T 3get_A          292 EFAKK  296 (365)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88875

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.59  E-value=2.8e-14  Score=120.91  Aligned_cols=145  Identities=14%  Similarity=0.139  Sum_probs=109.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+++.    ++++|++..+.+.+|. +.+.+++++|.++|++||+++|+||+|+  |  +. .+....+++...
T Consensus       124 ~~~l~~~i~~~----~~~~v~~~~~~~~~G~-~~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~-~~~~~~~~~d~~  193 (379)
T 3ke3_A          124 IETAVAKIKED----KSAIVYAPHVETSSGI-ILSEEYIKALSEAVHSVGGLLVIDCIAS--G--CV-WLDMKELGIDVL  193 (379)
T ss_dssp             HHHHHHHHHHH----TCSEEEEESEETTTTE-ECCHHHHHHHHHHHHHTTCEEEEECTTC--T--TC-CCCHHHHTCSEE
T ss_pred             HHHHHHHHhhc----CCcEEEEEeecCCCce-eCCHHHHHHHHHHHHHcCCEEEEEeccc--C--Cc-cccccccCCCEE
Confidence            68888888643    3346777777777774 5568899999999999999999999987  3  22 334555566555


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccc---c-------------------ccCCCchHHHHHHHHHHHHhhcc---
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAA---H-------------------FNTFGGNPVGCVIASTVLDVIKD---  174 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~---~-------------------~~t~~~~p~~~~aa~aal~~~~~---  174 (195)
                      +.+.+|+++++..+|++++++++++.+....   +                   .++++.|+.+++++.++|+.+.+   
T Consensus       194 ~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~  273 (379)
T 3ke3_A          194 ISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGF  273 (379)
T ss_dssp             EECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             EecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcH
Confidence            6666799987656899999999888776421   1                   12236688888888899998754   


Q ss_pred             hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++.++.++++++|++.|++
T Consensus       274 ~~~~~~~~~l~~~l~~~l~~  293 (379)
T 3ke3_A          274 DILRDAQWELGNRVRKVLTD  293 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            47788899999999999875

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.59  E-value=2e-14  Score=122.47  Aligned_cols=138  Identities=11%  Similarity=0.038  Sum_probs=99.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|+++++.+++|.+.+    +++|.++|++||+++|+||+|+.+ ..+. .  . .++....
T Consensus       139 ~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~-~~~~-~--~-~~~~di~  204 (398)
T 2rfv_A          139 PEEIRAAMR-----PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP-YCQQ-P--L-QLGADIV  204 (398)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT-TTCC-G--G-GGTCSEE
T ss_pred             HHHHHHhcC-----CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc-ccCC-c--h-hhCCcEE
Confidence            566776664     36889999999999998876    999999999999999999999833 3332 1  1 2333333


Q ss_pred             hhhhccccC-CCCce-EEEEecHHHHH-Hhhcccccc-CCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IVTMAKGIA-NGFPM-GAVVTTTEIAQ-VLTKAAHFN-TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~~~sK~l~-~G~~~-g~v~~~~~i~~-~l~~~~~~~-t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      +.++||.++ .|+++ |++++++++++ .+....... +.+.++++++++.++|+.+.  ...+++.++.+.+.+.|+
T Consensus       205 ~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~  280 (398)
T 2rfv_A          205 VHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG--IRMERHCENALKIARFLE  280 (398)
T ss_dssp             EEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             EEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHH
Confidence            457789998 58887 99999998776 555443333 45678999999999998653  234445556666655554

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.58  E-value=1.3e-14  Score=122.65  Aligned_cols=141  Identities=14%  Similarity=0.095  Sum_probs=109.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+++.    ++++|+++++++.+|.+.+    +++|.++|++||+++|+||+|+ +|...   ...  ....+|
T Consensus       148 ~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~---~~~--~~~~~d  213 (393)
T 1vjo_A          148 LEELRTALETH----RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP---IFL--DAWGVD  213 (393)
T ss_dssp             HHHHHHHHHHH----CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC---CCT--TTTTCS
T ss_pred             HHHHHHHHhhC----CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC---Ccc--cccCcc
Confidence            67888888753    4558999999999998876    8999999999999999999999 65432   112  234568


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhcc-----cc--------------ccCC-CchHHHHHHHHHHHHhhcc---
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKA-----AH--------------FNTF-GGNPVGCVIASTVLDVIKD---  174 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~-----~~--------------~~t~-~~~p~~~~aa~aal~~~~~---  174 (195)
                      +++.|  |+++++.++|++++++++++.+...     ..              ..++ +.++++++++.++|+.+.+   
T Consensus       214 i~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~  293 (393)
T 1vjo_A          214 LAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGL  293 (393)
T ss_dssp             EEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             EEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccH
Confidence            77655  9998655899999999988877432     01              2233 6688999999999998643   


Q ss_pred             hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++++++++++++++.+.|++
T Consensus       294 ~~~~~~~~~~~~~l~~~L~~  313 (393)
T 1vjo_A          294 ANCWQRHQKNVEYLWERLED  313 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999875

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.58  E-value=1.1e-14  Score=124.47  Aligned_cols=150  Identities=13%  Similarity=0.027  Sum_probs=106.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHH-HHcCCEEEEeccccCccccC-C--Cccccc--
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELI-KSNNGLFISDEVQTGFGRTG-D--NYWGFE--  112 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~-~~~~~llI~DEv~~g~gr~G-~--~~~~~~--  112 (195)
                      ++.|++.+++.   .++++|++.| .++.+|. +++.+.+++|+++| ++||++||+||+|+.+.+.+ .  ......  
T Consensus       160 ~~~l~~~l~~~---~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~  235 (423)
T 3ez1_A          160 VDAVERLAGTD---PSVKGILFVPTYSNPGGE-TISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVL  235 (423)
T ss_dssp             HHHHHHHHHSC---TTEEEEEECSSSCTTTCC-CCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHH
T ss_pred             HHHHHHHHhhC---CCceEEEECCCCCCCCCc-CCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhh
Confidence            67888888632   3788888886 5666785 55677799999999 99999999999999644433 1  011111  


Q ss_pred             -----ccCCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh-hc---c--hhHHHHH
Q psy13322        113 -----MHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV-IK---D--EELQYNC  181 (195)
Q Consensus       113 -----~~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~-~~---~--~~~~~~l  181 (195)
                           ..+....+.++||.+.+|+++|++++++++++.+.......+++.+++++.++.++|+. ..   +  .+..+.+
T Consensus       236 ~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  315 (423)
T 3ez1_A          236 ARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAII  315 (423)
T ss_dssp             HHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred             hhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence                 11222335688999668999999999999999887766667788899999999988886 21   1  2344555


Q ss_pred             HHHHHHHHHHhh
Q psy13322        182 KQVSAQIIGYLR  193 (195)
Q Consensus       182 ~~~~~~l~~~L~  193 (195)
                      +++.+.+.+.|.
T Consensus       316 ~~~~~~l~~~l~  327 (423)
T 3ez1_A          316 APKFRAVDEVLR  327 (423)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            566666555553

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.57  E-value=9.6e-15  Score=125.34  Aligned_cols=149  Identities=9%  Similarity=0.024  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHH-HHcCCEEEEeccccCccccCCC--ccccc---
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELI-KSNNGLFISDEVQTGFGRTGDN--YWGFE---  112 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~-~~~~~llI~DEv~~g~gr~G~~--~~~~~---  112 (195)
                      ++.|++.+..    .++++|++.| .++.+|. +.+.+.+++|.++| ++||++||+||+|+++.+.+.+  ...+.   
T Consensus       169 ~~~l~~~l~~----~~~~~v~~~p~~~NPtG~-~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  243 (427)
T 3ppl_A          169 MDAVEELVKN----PQVKGMWVVPVFSNPTGF-TVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLG  243 (427)
T ss_dssp             HHHHHHHTTS----TTEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHH
T ss_pred             HHHHHHHHhc----CCCeEEEECCCCCCCCCc-cCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhh
Confidence            5777777742    3788888886 5667785 55677799999999 9999999999999986554431  11111   


Q ss_pred             ----ccCCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh---cc--hhHHHHHHH
Q psy13322        113 ----MHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI---KD--EELQYNCKQ  183 (195)
Q Consensus       113 ----~~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~---~~--~~~~~~l~~  183 (195)
                          ..+....+.+|||.+++|+++||+++++++++.+.......+++.+++++.++.++|+..   .+  ...++.+++
T Consensus       244 ~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  323 (427)
T 3ppl_A          244 EAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAP  323 (427)
T ss_dssp             HHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHH
Confidence                123344466889996689999999999999988877666667788999999998888752   11  355666777


Q ss_pred             HHHHHHHHhh
Q psy13322        184 VSAQIIGYLR  193 (195)
Q Consensus       184 ~~~~l~~~L~  193 (195)
                      +.+.+.+.|+
T Consensus       324 ~~~~l~~~L~  333 (427)
T 3ppl_A          324 KFNKVLEILD  333 (427)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776664

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.57  E-value=9.5e-15  Score=125.70  Aligned_cols=152  Identities=13%  Similarity=0.074  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc--cccCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF--EMHGV  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~--~~~~~  116 (195)
                      +++.|++.|++..  .++++|++...++.+|. +.+.+.+++|+++|++||++||+||+|+.+ ..+..+...  ...+.
T Consensus       192 d~~~l~~~l~~~~--~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~  267 (444)
T 3if2_A          192 DFEALENLPALKE--GRIGAICCSRPTNPTGN-VLTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNN  267 (444)
T ss_dssp             CHHHHHTCHHHHT--TCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTT
T ss_pred             CHHHHHHHHHhcC--CCceEEEeCCCCCCCCC-cCCHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCC
Confidence            3677887755432  36778888777888896 567788999999999999999999999743 222111111  11233


Q ss_pred             CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHH
Q psy13322        117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-----EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-----~~~~~~l~~~~~~l~~~  191 (195)
                      ...+.++||.+.+|+++|++++++++++.+.......+++.++++++++.++++....     +.+.++++++.+.+.+.
T Consensus       268 ~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (444)
T 3if2_A          268 TILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKL  347 (444)
T ss_dssp             EEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             EEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3446688998558899999999999999887766666777888999999888876431     23566777777777777


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       348 l~~  350 (444)
T 3if2_A          348 LKQ  350 (444)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.56  E-value=3.8e-14  Score=120.06  Aligned_cols=143  Identities=11%  Similarity=0.114  Sum_probs=106.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+++.    ++++|+++++++.+|.+.+    +++|+++|++||+++|+||+|+ +|..   .+.....+....
T Consensus       127 ~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~---~~~~~~~~~d~~  194 (411)
T 3nnk_A          127 PDQVEDAVKRI----RPRLLLTVQGDTSTTMLQP----LAELGEICRRYDALFYTDATAS-LGGN---PLETDVWGLDAV  194 (411)
T ss_dssp             HHHHHHHHHHH----CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-BTTB---CCCTTTTTCSEE
T ss_pred             HHHHHHHHhhC----CCeEEEEeCCCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-cCCc---ccchhccCCcEE
Confidence            68888888753    5668999999999998876    8899999999999999999987 3322   122233333333


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccc------------------------------------cccCCCchHHHHH
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAA------------------------------------HFNTFGGNPVGCV  163 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~------------------------------------~~~t~~~~p~~~~  163 (195)
                      +.+++|+++++.++|++++++++++.+....                                    .....+.++.+++
T Consensus       195 ~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (411)
T 3nnk_A          195 SAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALF  274 (411)
T ss_dssp             ECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHH
T ss_pred             EecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHH
Confidence            3455699876667999999999988776432                                    0112345788888


Q ss_pred             HHHHHHHhhcc---hhHHHHHHHHHHHHHHHhhc
Q psy13322        164 IASTVLDVIKD---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       164 aa~aal~~~~~---~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++.++++.+.+   +++.++++++++++.+.|++
T Consensus       275 a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~  308 (411)
T 3nnk_A          275 GARECARLILQEGLDYGIARHKLHGDALVKGIQA  308 (411)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            88889987654   47888999999999999875

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.56  E-value=2.7e-14  Score=120.72  Aligned_cols=152  Identities=14%  Similarity=0.192  Sum_probs=106.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-Cccccccc-CCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-NYWGFEMH-GVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~~~~-~~~  117 (195)
                      +++|++.++++.  .+.+++++....+.+|. .++.+.+++|.++|++||+++|+||+|+++.+.+. ...+...+ +..
T Consensus       160 ~~~l~~~l~~~~--~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
T 3fsl_A          160 FNDLLATLKTLQ--AGSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAG  236 (397)
T ss_dssp             HHHHHHHHTTCC--TTCEEEECSSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC--CCCEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcC
Confidence            688999888653  36778888888888995 56778899999999999999999999998876531 12222221 222


Q ss_pred             cc---hhhhccccC-CCCceEEEEe---cHHHHHHhhccc----cccCCCchHHHHHHHHHHHHhh------c--chhHH
Q psy13322        118 PD---IVTMAKGIA-NGFPMGAVVT---TTEIAQVLTKAA----HFNTFGGNPVGCVIASTVLDVI------K--DEELQ  178 (195)
Q Consensus       118 pd---i~~~sK~l~-~G~~~g~v~~---~~~i~~~l~~~~----~~~t~~~~p~~~~aa~aal~~~------~--~~~~~  178 (195)
                      ++   +.++||.++ .|+++|++++   ++++++.+....    ...+.+.++++++++.++++..      .  .++++
T Consensus       237 ~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  316 (397)
T 3fsl_A          237 LPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMR  316 (397)
T ss_dssp             CCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            23   347799999 8999999975   455554432221    2233445677777777777632      1  25677


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      +++++++++|.+.|++
T Consensus       317 ~~~~~~~~~l~~~L~~  332 (397)
T 3fsl_A          317 TRILAMRQELVKVLST  332 (397)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8899999999998864

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.56  E-value=3.5e-14  Score=120.33  Aligned_cols=139  Identities=12%  Similarity=0.009  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-ccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIA-ESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aaviv-Epv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~gr~G~~~~~~~~~~~~  117 (195)
                      +++|++.+++.    ++++|++ +|.++   . ..+   +++|.++|++||+++|+||+|++ +...|. ....  .+ .
T Consensus       152 ~~~l~~~l~~~----~~~~v~~~~p~~~---~-~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~~--~~-~  216 (407)
T 2dkj_A          152 LEEVRRLALEH----RPKVIVAGASAYP---R-FWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGL-HPNP--LP-Y  216 (407)
T ss_dssp             HHHHHHHHHHH----CCSEEEECCSSCC---S-CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTC-SCCC--TT-T
T ss_pred             HHHHHHHHhhc----CCeEEEEeccccC---C-CCC---HHHHHHHHHHcCCEEEEEccccccccccCc-cCCc--cc-c
Confidence            67888888743    3456777 67764   3 333   89999999999999999999985 434453 2111  12 2


Q ss_pred             cchh--hhccccCCCCceEEEEec-HHHHHHhhccc-cccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHH
Q psy13322        118 PDIV--TMAKGIANGFPMGAVVTT-TEIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQVSAQIIG  190 (195)
Q Consensus       118 pdi~--~~sK~l~~G~~~g~v~~~-~~i~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~l~~  190 (195)
                      +|++  ++||+++ |+++|+++++ +++++.+.... ...+.+.++..++++.++++.+..   +++.++++++++++.+
T Consensus       217 ~di~~~s~sK~l~-g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~  295 (407)
T 2dkj_A          217 AHVVTSTTHKTLR-GPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAE  295 (407)
T ss_dssp             CSEEEEESSGGGC-CCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEeccccCC-CCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            5766  6789887 5678999999 78888776543 333445577777788888887633   6788999999999999


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       296 ~L~~  299 (407)
T 2dkj_A          296 ELAR  299 (407)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9875

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.55  E-value=3.9e-14  Score=118.83  Aligned_cols=146  Identities=14%  Similarity=0.097  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc--cCCC--------cc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR--TGDN--------YW  109 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr--~G~~--------~~  109 (195)
                      +++|++.+++.    ++++|+++++.+++|.+.+    +++|.++|++||++||+||+|+++..  .|.+        .+
T Consensus       160 ~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~  231 (397)
T 3f9t_A          160 EKFVKDAVEDY----DVDGIIGIAGTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKF  231 (397)
T ss_dssp             HHHHHHHHHHS----CCCEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCC
T ss_pred             HHHHHHHHhhc----CCeEEEEECCCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccc
Confidence            68888888853    4568888888899998866    99999999999999999999987432  3310        11


Q ss_pred             cccccCCCcchhhhccccCCCCceEEEEecHH-HHHHhhccc-c----------ccCCCchHHHHHHHHHHHHhhcchhH
Q psy13322        110 GFEMHGVSPDIVTMAKGIANGFPMGAVVTTTE-IAQVLTKAA-H----------FNTFGGNPVGCVIASTVLDVIKDEEL  177 (195)
Q Consensus       110 ~~~~~~~~pdi~~~sK~l~~G~~~g~v~~~~~-i~~~l~~~~-~----------~~t~~~~p~~~~aa~aal~~~~~~~~  177 (195)
                      .+.. ++...+.+++|.+++|+++|+++++++ +.+.+.... +          +++.+.+++++.++++.+....-++.
T Consensus       232 ~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  310 (397)
T 3f9t_A          232 DFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKI  310 (397)
T ss_dssp             SGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHH
Confidence            2222 445556677898888889999888664 444442211 1          12223466777777776654334677


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      .++++++++++.+.|++
T Consensus       311 ~~~~~~~~~~l~~~L~~  327 (397)
T 3f9t_A          311 VNECMENTLYLYKKLKE  327 (397)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88899999999999875

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.55  E-value=7.9e-14  Score=116.79  Aligned_cols=141  Identities=13%  Similarity=0.144  Sum_probs=105.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.++    ++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ ++...   ....  ...+|
T Consensus       116 ~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~--~~~~d  181 (384)
T 3zrp_A          116 PGEVEEEVRKS----EYKLVALTHVETSTGVREP----VKDVINKIRKYVELIVVDGVSS-VGAEE---VKAE--EWNVD  181 (384)
T ss_dssp             HHHHHHHHHHS----CEEEEEEESEETTTTEECC----HHHHHHHHGGGEEEEEEECTTT-TTTSC---CCTT--TTTCS
T ss_pred             HHHHHHHHHhC----CCcEEEEeCCCCCCceECc----HHHHHHHHHhcCCEEEEECccc-ccCcc---cccc--ccCCC
Confidence            68888888853    5889999999999998776    9999999999999999999997 33221   1122  22456


Q ss_pred             hhhh--ccccCCCCceEEEEecHHHHHHh-h------------ccc---------cccCC-CchHHHHHHHHHHHHhhcc
Q psy13322        120 IVTM--AKGIANGFPMGAVVTTTEIAQVL-T------------KAA---------HFNTF-GGNPVGCVIASTVLDVIKD  174 (195)
Q Consensus       120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l-~------------~~~---------~~~t~-~~~p~~~~aa~aal~~~~~  174 (195)
                      ++++  +|+++++..+|++++++++++.+ .            ...         ....+ +.++.++++..++++.+.+
T Consensus       182 ~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~  261 (384)
T 3zrp_A          182 VYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEK  261 (384)
T ss_dssp             EEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHh
Confidence            6655  59998666799999999987776 1            110         11222 4467777777788887643


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 ---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ---~~~~~~l~~~~~~l~~~L~~  194 (195)
                         +++.++++++++++.+.|++
T Consensus       262 ~~~~~~~~~~~~~~~~l~~~L~~  284 (384)
T 3zrp_A          262 EGIENRIKRHTMVASAIRAGLEA  284 (384)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHH
Confidence               57889999999999999875

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.55  E-value=3.8e-14  Score=120.25  Aligned_cols=152  Identities=16%  Similarity=0.169  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC--Cccccccc-CC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD--NYWGFEMH-GV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~--~~~~~~~~-~~  116 (195)
                      ++.+++.|++..  .+.++|++....+.+|. .++.+.+++|.++|++||+++|+||+|.++++.+.  ...+...+ +.
T Consensus       162 ~~~l~~~l~~~~--~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~  238 (401)
T 7aat_A          162 FTGAMEDISKIP--EKSIILLHACAHNPTGV-DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQ  238 (401)
T ss_dssp             HHHHHHHHTTSC--TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred             HHHHHHHHHhCC--CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhc
Confidence            566777777632  36778999999999996 57888999999999999999999999998876542  11222211 23


Q ss_pred             Ccch---hhhccccC-CCCceEEEEe---cHH----HHHHhhccccccCCCchHHHHHHHHHHHHhh------c--chhH
Q psy13322        117 SPDI---VTMAKGIA-NGFPMGAVVT---TTE----IAQVLTKAAHFNTFGGNPVGCVIASTVLDVI------K--DEEL  177 (195)
Q Consensus       117 ~pdi---~~~sK~l~-~G~~~g~v~~---~~~----i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~------~--~~~~  177 (195)
                      .+++   .++||.+| .|+++|++++   +++    +...+.......+.+.+..++.++..+++..      .  -+++
T Consensus       239 ~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  318 (401)
T 7aat_A          239 GIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGM  318 (401)
T ss_dssp             TCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3443   47799999 8999999886   555    3344333323334455566666666566421      1  2456


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      ++++++++++|.+.|++
T Consensus       319 ~~~~~~~r~~l~~~L~~  335 (401)
T 7aat_A          319 ADRIISMRTQLVSNLKK  335 (401)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            78899999999998865

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.55  E-value=5.2e-14  Score=118.05  Aligned_cols=142  Identities=15%  Similarity=0.060  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|+++++.+.+|.+.+    +++|+++|++||+++|+||+|+..++.    +....+++...
T Consensus       134 ~~~l~~~~~-----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~~d~~  200 (376)
T 3f0h_A          134 KEKLYEYDN-----QNFTGLLVNVDETSTAVLYD----TMMIGEFCKKNNMFFVCDCVSAFLADP----FNMNECGADVM  200 (376)
T ss_dssp             HHHHHTTTT-----SCCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHTCSEE
T ss_pred             HHHHHHhhc-----cCceEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEEcCccccCcc----ccccccCccEE
Confidence            456665432     36778999999999998776    999999999999999999999854332    22344455444


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhcccc-----------------ccCCCchHHHHHHHHHHHHhhcc----hhHH
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH-----------------FNTFGGNPVGCVIASTVLDVIKD----EELQ  178 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~-----------------~~t~~~~p~~~~aa~aal~~~~~----~~~~  178 (195)
                      +.+++|+++++..+|++++++++++.+.....                 ...++.+..+++++.++++.+.+    +++.
T Consensus       201 ~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  280 (376)
T 3f0h_A          201 ITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEV  280 (376)
T ss_dssp             EEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             EecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            55667999865568899999998888764211                 11334455666777888887643    4577


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++.+++++++.+.|++
T Consensus       281 ~~~~~~~~~l~~~L~~  296 (376)
T 3f0h_A          281 ARIASQAADFRAKIKD  296 (376)
T ss_dssp             HHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888889999888865

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.54  E-value=6.4e-14  Score=118.85  Aligned_cols=138  Identities=14%  Similarity=0.119  Sum_probs=101.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.++     .++++|+++++++.+|.+.+    +++|.++|++||+++|+||+|+ +|...   .....+  .+|
T Consensus       159 ~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~--~~d  223 (420)
T 1t3i_A          159 LEHFKTLLS-----EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP---LDVQLI--DCD  223 (420)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHH--TCS
T ss_pred             HHHHHHhhC-----CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc---Cchhhc--CCC
Confidence            567777664     36889999999999998877    9999999999999999999998 43321   122223  367


Q ss_pred             hhhhc--cccC-CCCceEEEEecHHHHHHhhccccc--------------------cCCCchHHHHHHHHH-HHHhhcc-
Q psy13322        120 IVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAAHF--------------------NTFGGNPVGCVIAST-VLDVIKD-  174 (195)
Q Consensus       120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~~~--------------------~t~~~~p~~~~aa~a-al~~~~~-  174 (195)
                      ++++|  |.++ .|  +|++++++++++.+......                    ++.+.+++.++++++ +++.+.+ 
T Consensus       224 i~~~s~sK~~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~  301 (420)
T 1t3i_A          224 WLVASGHKMCAPTG--IGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDL  301 (420)
T ss_dssp             EEEEEGGGTTSCTT--CEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEehhhhcCCCc--eEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHh
Confidence            77655  9776 34  89999999998887654321                    223455566665554 7877654 


Q ss_pred             --hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 --EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 --~~~~~~l~~~~~~l~~~L~~  194 (195)
                        +++.++++++++++.+.|++
T Consensus       302 ~~~~~~~~~~~~~~~l~~~L~~  323 (420)
T 1t3i_A          302 GMENIHNYEVELTHYLWQGLGQ  323 (420)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence              57788899999999999875

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.54  E-value=6.1e-14  Score=119.34  Aligned_cols=139  Identities=10%  Similarity=0.014  Sum_probs=101.5

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc--ccCCCcchhhhccccCCCC
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE--MHGVSPDIVTMAKGIANGF  131 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~--~~~~~pdi~~~sK~l~~G~  131 (195)
                      .++++|++...++.+|. +++.+.+++|.++|++||+++|+||+|..+ ..+..+....  ..+....+.++||...+|+
T Consensus       179 ~~~~~v~~~~p~NptG~-~~~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~  256 (417)
T 3g7q_A          179 EETGMICVSRPTNPTGN-VITDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPGS  256 (417)
T ss_dssp             TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTTS
T ss_pred             cCceEEEECCCCCCCCC-ccCHHHHHHHHHHHHHcCCEEEEeCCCccc-cccccccccccCCCCCEEEEEechhccCCCc
Confidence            36788888888888995 556777999999999999999999999743 2221111110  1122223568899544899


Q ss_pred             ceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHHHHhhc
Q psy13322        132 PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-----EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       132 ~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-----~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++|++++++++++.+.......+++.++++++++.++++...-     +.+.++++++.+.+.+.|++
T Consensus       257 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (417)
T 3g7q_A          257 RCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRR  324 (417)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887766667778889999999998875431     12566777888888777753

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.54  E-value=5.5e-14  Score=118.59  Aligned_cols=138  Identities=14%  Similarity=0.150  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...   +....  ..+|
T Consensus       154 ~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~-~g~~~---~~~~~--~~~d  218 (406)
T 1kmj_A          154 LETLPTLFD-----EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHHP---VDVQA--LDCD  218 (406)
T ss_dssp             GGGHHHHCC-----TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHH--HTCS
T ss_pred             HHHHHHHhc-----cCCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhh-cCCCC---Ccccc--cCCC
Confidence            466777664     36889999999999998877    9999999999999999999998 33321   12222  2467


Q ss_pred             hh--hhccccC-CCCceEEEEecHHHHHHhhccccc---------------------cCCCchHHHHHHHH-HHHHhhcc
Q psy13322        120 IV--TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHF---------------------NTFGGNPVGCVIAS-TVLDVIKD  174 (195)
Q Consensus       120 i~--~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~---------------------~t~~~~p~~~~aa~-aal~~~~~  174 (195)
                      ++  +++|.+| .|  +|++++++++++.+.....+                     ++.+.+++.+++++ ++++.+.+
T Consensus       219 ~~~~s~~K~~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~  296 (406)
T 1kmj_A          219 FYVFSGHKLYGPTG--IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSA  296 (406)
T ss_dssp             EEEEEGGGTTSCTT--CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEchhccCCCC--cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHH
Confidence            65  5789996 45  79999999998887654321                     22334556555555 78887753


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 ---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ---~~~~~~l~~~~~~l~~~L~~  194 (195)
                         +++.++++++++++.+.|++
T Consensus       297 ~~~~~~~~~~~~~~~~l~~~L~~  319 (406)
T 1kmj_A          297 LGLNNIAEYEQNLMHYALSQLES  319 (406)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhc
Confidence               47788899999999999875

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.54  E-value=5.8e-14  Score=119.83  Aligned_cols=139  Identities=9%  Similarity=0.025  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.++     .++++|++|++.+++|.+.+    +++|+++|++||+++|+||+|+.+ ..+. .  . .++....
T Consensus       140 ~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~-~~~~-~--~-~~~~d~~  205 (398)
T 1gc0_A          140 LQALEAAMT-----PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP-YLQR-P--L-ELGADLV  205 (398)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH-HHCC-G--G-GGTCSEE
T ss_pred             HHHHHHhcC-----CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccc-ccCC-c--h-hhCceEE
Confidence            567777664     37889999999999998886    999999999999999999999843 3332 1  1 2344444


Q ss_pred             hhhhccccC-CCCce-EEEEecHHHHH-Hhhccccc-cCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIA-NGFPM-GAVVTTTEIAQ-VLTKAAHF-NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~-~G~~~-g~v~~~~~i~~-~l~~~~~~-~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.+++|.++ .|+++ |++++++++++ .+...... .+.+.+|+++++++++++.+  +...++..++.+.+.+.|++
T Consensus       206 ~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~  282 (398)
T 1gc0_A          206 VHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL--NLRMDRHCANAQVLAEFLAR  282 (398)
T ss_dssp             EEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHT
T ss_pred             EECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHhc
Confidence            557789999 56786 99999987655 45443333 44567899999888888765  23445566666666666543

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.54  E-value=2.3e-14  Score=122.17  Aligned_cols=140  Identities=11%  Similarity=0.115  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|+++++.+++|.+.+    +++|+++|++||++||+||+|++ |..     ........+|
T Consensus       153 ~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~-----~~~~~~~~~d  217 (423)
T 3lvm_A          153 LKELEAAMR-----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL-----PIDLSQLKVD  217 (423)
T ss_dssp             HHHHHHHCC-----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS-----CCCTTTSCCS
T ss_pred             HHHHHHhcC-----CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC-----CcChhhcCCC
Confidence            577777665     36789999999999998877    99999999999999999999873 222     1222234578


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhcccc-------ccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAH-------FNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI  188 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~-------~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l  188 (195)
                      ++++|  |.+| +..+|++++++++.+.+.....       ..+.+.++.+++++.++++.+.+  +++.+++++++++|
T Consensus       218 i~~~s~sK~~g-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l  296 (423)
T 3lvm_A          218 LMSFSGHKIYG-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRL  296 (423)
T ss_dssp             EEEEESTTTTS-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEechHHhcC-CCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77665  9765 2338999998776655544322       22344578888888888887754  67889999999999


Q ss_pred             HHHhhcC
Q psy13322        189 IGYLRVV  195 (195)
Q Consensus       189 ~~~L~~l  195 (195)
                      .+.|+++
T Consensus       297 ~~~L~~~  303 (423)
T 3lvm_A          297 WNGIKDI  303 (423)
T ss_dssp             HHHHTTS
T ss_pred             HHHHhcC
Confidence            9998753

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.54  E-value=5.9e-14  Score=119.93  Aligned_cols=137  Identities=13%  Similarity=0.062  Sum_probs=103.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|++|++.+++|.+.+    +++|+++|++||+++|+||+|+.. ....      ..+..+|
T Consensus       141 ~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~-~~~~------~~~~~~d  204 (392)
T 3qhx_A          141 LDAVRAAIR-----PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP-ALQQ------PLSLGAD  204 (392)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT-TTCC------GGGGTCS
T ss_pred             HHHHHHhhC-----CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc-ccCC------hHHhCCc
Confidence            577777665     37889999999999998876    999999999999999999999732 2222      1234567


Q ss_pred             hhh--hccccCC-C-CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVT--MAKGIAN-G-FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~--~sK~l~~-G-~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++  ++|.+++ | .++|+++++ +++.+.+.......++..+|+.+++++..++.+.  ...++..++.+++.+.|++
T Consensus       205 i~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~--~~~~~~~~~~~~l~~~L~~  282 (392)
T 3qhx_A          205 VVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLV--LRMQRHSENAAAVAEFLAE  282 (392)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHhc
Confidence            776  7899994 5 689999998 5788877665555667778999998888887653  2345566666677666653

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.53  E-value=4.8e-14  Score=118.52  Aligned_cols=140  Identities=14%  Similarity=0.025  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH----HcCCEEEEeccccCccccCCCcccccccC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIK----SNNGLFISDEVQTGFGRTGDNYWGFEMHG  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~----~~~~llI~DEv~~g~gr~G~~~~~~~~~~  115 (195)
                      ++.|++.+.     .++++|+++++.+++|.+.+    +++|.++|+    +||+++|+||+|+ +|....   ..  ..
T Consensus       144 ~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~~---~~--~~  208 (390)
T 1elu_A          144 AAVLANHLG-----PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLPL---DF--SR  208 (390)
T ss_dssp             HHHHHTTCC-----TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBCC---CT--TT
T ss_pred             HHHHHHhcC-----CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcCC---Ch--hh
Confidence            566666554     36889999999999998877    999999999    9999999999998 543321   11  13


Q ss_pred             CCcchhh--hccccCCCCceEEEEecHHHHHHhhccc----------------------cccCCCchHHHHHHHHHHHHh
Q psy13322        116 VSPDIVT--MAKGIANGFPMGAVVTTTEIAQVLTKAA----------------------HFNTFGGNPVGCVIASTVLDV  171 (195)
Q Consensus       116 ~~pdi~~--~sK~l~~G~~~g~v~~~~~i~~~l~~~~----------------------~~~t~~~~p~~~~aa~aal~~  171 (195)
                      ..+|+++  ++|.+.+|+++|++++++++++.+....                      ...+.+.++++++++.++++.
T Consensus       209 ~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  288 (390)
T 1elu_A          209 LEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQL  288 (390)
T ss_dssp             SCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEccccccccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHH
Confidence            4567776  7897777778999999998877665421                      011234577888888888887


Q ss_pred             hcc----hhHHHHHHHHHHHHHHHhhc
Q psy13322        172 IKD----EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       172 ~~~----~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.+    +++.++++++++++.+.|++
T Consensus       289 l~~~~~~~~~~~~~~~~~~~l~~~L~~  315 (390)
T 1elu_A          289 HQRQGTAEERYQAICQRSEFLWRGLNQ  315 (390)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence            643    45788899999999998875

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.53  E-value=1.2e-13  Score=114.85  Aligned_cols=142  Identities=10%  Similarity=0.101  Sum_probs=105.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+++.   .++++|++....+++|.+.+    +++|.++|++||+++|+||+|+ +|...   ....  ...+|
T Consensus       119 ~~~l~~~l~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~---~~~~--~~~~d  185 (366)
T 1m32_A          119 VQAIDAILNAD---PTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP---MDIA--ALHID  185 (366)
T ss_dssp             HHHHHHHHHHC---TTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCTT--TTTCS
T ss_pred             HHHHHHHHhcC---CCeEEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC---cccc--ccCcc
Confidence            67888888764   24556777777778898776    8999999999999999999998 44332   1222  22467


Q ss_pred             hhh--hccccCCCCceEEEEecHHHHHHhhcccc------------------ccCCCchHHHHHHHHHHHHhhcc----h
Q psy13322        120 IVT--MAKGIANGFPMGAVVTTTEIAQVLTKAAH------------------FNTFGGNPVGCVIASTVLDVIKD----E  175 (195)
Q Consensus       120 i~~--~sK~l~~G~~~g~v~~~~~i~~~l~~~~~------------------~~t~~~~p~~~~aa~aal~~~~~----~  175 (195)
                      +++  +||+++++..+|++++++++++.+.....                  ...++.++.+++++.++++.+.+    +
T Consensus       186 i~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~  265 (366)
T 1m32_A          186 YLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVA  265 (366)
T ss_dssp             EEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred             EEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHh
Confidence            664  57999765567999999998876654210                  01256788999999999987743    4


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++.++++++++++.+.|++
T Consensus       266 ~~~~~~~~~~~~l~~~L~~  284 (366)
T 1m32_A          266 ARHQRYQQNQRSLVAGMRA  284 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5788899999999999875

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.53  E-value=6.8e-14  Score=123.24  Aligned_cols=154  Identities=14%  Similarity=0.148  Sum_probs=110.8

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-Cccccc----c
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-NYWGFE----M  113 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~~----~  113 (195)
                      +++|++.|++.... .++++|++....+.+|. +++.+.+++|.++|++||+++|+||+|.++.+.+. .+.++.    .
T Consensus       221 ~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~-~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~  299 (500)
T 3tcm_A          221 TSDVKKQLEDARSRGINVRALVVINPGNPTGQ-VLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRS  299 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECCCCCCcc-cCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHH
Confidence            67888887753111 25777777777778885 66788899999999999999999999998766432 222321    2


Q ss_pred             cCC-Ccc---hh--hhcccc-C-CCCceEEEEe---cHHHHHHhhccccccCCCchHHHHHHHHHHHH-----------h
Q psy13322        114 HGV-SPD---IV--TMAKGI-A-NGFPMGAVVT---TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLD-----------V  171 (195)
Q Consensus       114 ~~~-~pd---i~--~~sK~l-~-~G~~~g~v~~---~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~-----------~  171 (195)
                      ++. ..+   ++  ++||++ | .|+++||+++   ++++++.+.... ..+++.++++++++.++++           .
T Consensus       300 ~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  378 (500)
T 3tcm_A          300 LGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASY  378 (500)
T ss_dssp             TTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHH
T ss_pred             hccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHH
Confidence            221 222   22  779999 6 7999999998   888888876543 3455678888888888886           2


Q ss_pred             hc-chhHHHHHHHHHHHHHHHhhcC
Q psy13322        172 IK-DEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       172 ~~-~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      .+ .+.+++++++++++|.+.|+++
T Consensus       379 ~~~~~~~~~~l~~~~~~l~~~L~~~  403 (500)
T 3tcm_A          379 KAEKDGILASLARRAKALEHAFNKL  403 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            22 2567788999999999998753

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.53  E-value=4.4e-14  Score=125.52  Aligned_cols=147  Identities=14%  Similarity=0.085  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH-HcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIK-SNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~-~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.+.     .++++|++....+++|. +.+.+.+++|.++|+ +||+++|+||+|+++.+.+... .....+...
T Consensus       234 ~~~l~~~l~-----~~~k~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~-~~~~~~~~i  306 (533)
T 3f6t_A          234 PNEIEKLKD-----PSIKALIVVNPTNPTSK-EFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSI-YSVVPYNTM  306 (533)
T ss_dssp             HHHHHHHSC-----TTEEEEEEESSCTTTCB-CCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCH-HHHSGGGEE
T ss_pred             HHHHHHHhC-----CCCeEEEEeCCCCCCcc-ccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCH-hhcCCCCEE
Confidence            567777654     36778888777788886 557788999999999 6899999999999886543211 111112233


Q ss_pred             chhhhccccC-CCCceEEEEecHH-----HHHHh--------------------------------hccccccCCCchHH
Q psy13322        119 DIVTMAKGIA-NGFPMGAVVTTTE-----IAQVL--------------------------------TKAAHFNTFGGNPV  160 (195)
Q Consensus       119 di~~~sK~l~-~G~~~g~v~~~~~-----i~~~l--------------------------------~~~~~~~t~~~~p~  160 (195)
                      .+.+|||.+| .|||+|+++++++     +++.+                                .......+.+.+++
T Consensus       307 ~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~  386 (533)
T 3f6t_A          307 LVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTP  386 (533)
T ss_dssp             EEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHH
T ss_pred             EEecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChH
Confidence            4568899999 8999999999876     43322                                22334455566676


Q ss_pred             HHHH----HHHHHH------hhcc--hhHHHHHHHHHHHHHHHhh
Q psy13322        161 GCVI----ASTVLD------VIKD--EELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       161 ~~~a----a~aal~------~~~~--~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++++    ++++|.      ...+  +++++++++++++|.+.|+
T Consensus       387 ~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~  431 (533)
T 3f6t_A          387 QQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ  431 (533)
T ss_dssp             HHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6666    556663      1212  5677889999999988874

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.53  E-value=1.2e-13  Score=114.36  Aligned_cols=141  Identities=15%  Similarity=0.107  Sum_probs=104.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+++.    ++++|+++.+++++|.+.+    +++|.++|++||+++|+||+|+ +|...   .....+  .+|
T Consensus       113 ~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~--~~d  178 (353)
T 2yrr_A          113 PEAVARALKRR----RYRMVALVHGETSTGVLNP----AEAIGALAKEAGALFFLDAVTT-LGMLP---FSMRAM--GVD  178 (353)
T ss_dssp             HHHHHHHHHHS----CCSEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHH--TCS
T ss_pred             HHHHHHHHHhC----CCCEEEEEccCCCcceecC----HHHHHHHHHHcCCeEEEEcCcc-ccccc---cccccc--Cce
Confidence            67888888753    4558899999999998776    8899999999999999999995 65432   122222  356


Q ss_pred             hhhh--ccccCCCCceEEEEecHHHHHHhhc---c------------ccccCCCchHHHHHHHHHHHHhhcc---hhHHH
Q psy13322        120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTK---A------------AHFNTFGGNPVGCVIASTVLDVIKD---EELQY  179 (195)
Q Consensus       120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~---~------------~~~~t~~~~p~~~~aa~aal~~~~~---~~~~~  179 (195)
                      ++++  +|.++++..+|++++++++++.+..   .            ......+.++.+++++.++++.+.+   +++++
T Consensus       179 ~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  258 (353)
T 2yrr_A          179 YAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARER  258 (353)
T ss_dssp             EEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             EEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            6654  6988754447999999998877651   0            1122334577888888888887643   46788


Q ss_pred             HHHHHHHHHHHHhhc
Q psy13322        180 NCKQVSAQIIGYLRV  194 (195)
Q Consensus       180 ~l~~~~~~l~~~L~~  194 (195)
                      +++++++++.+.|++
T Consensus       259 ~~~~~~~~l~~~L~~  273 (353)
T 2yrr_A          259 RAREVYAWVLEELKA  273 (353)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            899999999998875

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.52  E-value=1.6e-13  Score=117.64  Aligned_cols=138  Identities=12%  Similarity=0.047  Sum_probs=98.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-cCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS-NNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~-~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.+.     .++++|+++++.+++|.+.+    +++|.++|++ ||+++|+||+|+.+.+. . .  .. ++...
T Consensus       137 ~~~l~~~i~-----~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~~-~-~--~~-~~~di  202 (404)
T 1e5e_A          137 PGEVKKHMK-----PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMIT-N-P--VD-FGVDV  202 (404)
T ss_dssp             TTHHHHHCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTTC-C-G--GG-GTCSE
T ss_pred             HHHHHHhcC-----CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhhC-C-c--cc-cCCEE
Confidence            466666654     36889999999999998775    9999999999 99999999999965432 2 1  22 23222


Q ss_pred             chhhhccccC-CCCce-EEEEecHHHHH-Hhhcccccc-CCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        119 DIVTMAKGIA-NGFPM-GAVVTTTEIAQ-VLTKAAHFN-TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       119 di~~~sK~l~-~G~~~-g~v~~~~~i~~-~l~~~~~~~-t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      -+.++||+++ .|+++ |++++++++++ .+....... +.+.+++++.++.++|+.+.  ...++..++.+.+.+.|+
T Consensus       203 ~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~  279 (404)
T 1e5e_A          203 VVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN--IRMKAESENAMKVAEYLK  279 (404)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHHHHH
Confidence            2346789999 68897 99999998877 776654433 45678999999999987642  234444555555554443

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.52  E-value=1.5e-13  Score=121.03  Aligned_cols=153  Identities=16%  Similarity=0.132  Sum_probs=110.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-Cccccccc--CC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-NYWGFEMH--GV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~~~~--~~  116 (195)
                      +++|++.|++...+.++++|++....+.+|. +++.+.+++|.++|++||++||+||+|..+.+.+. .+.++...  ++
T Consensus       220 ~~~le~~l~~~~~~~~~k~i~l~np~NPTG~-v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~  298 (498)
T 3ihj_A          220 VNELRRAVQEAKDHCDPKVLCIINPGNPTGQ-VQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEM  298 (498)
T ss_dssp             HHHHHHHHHHHTTTSEEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHT
T ss_pred             HHHHHHHHHhhhccCCCeEEEEECCCCCCCC-cCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHh
Confidence            7889998886532125778888777888885 66778899999999999999999999998765442 23233211  11


Q ss_pred             Cc----c-----hhhhcccc-C-CCCceEEEE---ecHHHHHHhhccccccCCCchHHHHHHHHHHHHh-----------
Q psy13322        117 SP----D-----IVTMAKGI-A-NGFPMGAVV---TTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV-----------  171 (195)
Q Consensus       117 ~p----d-----i~~~sK~l-~-~G~~~g~v~---~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~-----------  171 (195)
                      .+    +     +.++||++ | .|+++||++   .++++++.+.... ....+.++++++++.++++-           
T Consensus       299 ~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~  377 (498)
T 3ihj_A          299 GPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLL-SVRLCPPVSGQAAMDIVVNPPVAGEESFEQF  377 (498)
T ss_dssp             CHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHH-HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHH
T ss_pred             cccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCCccCcccHHHH
Confidence            11    1     23779999 5 799999998   5888888886553 24456678888887777741           


Q ss_pred             hc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        172 IK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       172 ~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++ .+.++++++++++++.+.|++
T Consensus       378 ~~~~~~~~~~l~~~~~~l~~~L~~  401 (498)
T 3ihj_A          378 SREKESVLGNLAKKAKLTEDLFNQ  401 (498)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22 246678899999999999875

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.51  E-value=2e-13  Score=117.61  Aligned_cols=150  Identities=14%  Similarity=0.148  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCC--ccccccc-C
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDN--YWGFEMH-G  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~--~~~~~~~-~  115 (195)
                      ++.|++.+.+..   +.++|++.+- ++.+|. +++.+.+++|.++|++||+++|+||+|.+|.+.+..  ..+...+ .
T Consensus       161 ~~~l~~~l~~~~---~~~~i~l~~~~~NPTG~-~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~  236 (405)
T 3k7y_A          161 YDLFLNDLRNIP---NGSSVILQISCYNPCSV-NIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE  236 (405)
T ss_dssp             HHHHHHHHHHSC---SSCEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHT
T ss_pred             HHHHHHHHHhCC---CCeEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHh
Confidence            678888887642   3446777765 688995 678899999999999999999999999998654310  1112111 2


Q ss_pred             CCcch---hhhccccC-CCCceEEEEe---cHHHHHHhhcc----ccccCCCchHHHHHHHHHHHHhh-------cc-hh
Q psy13322        116 VSPDI---VTMAKGIA-NGFPMGAVVT---TTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDVI-------KD-EE  176 (195)
Q Consensus       116 ~~pdi---~~~sK~l~-~G~~~g~v~~---~~~i~~~l~~~----~~~~t~~~~p~~~~aa~aal~~~-------~~-~~  176 (195)
                      ..+.+   -+|||+++ .|||+||+++   ++++++.+...    ......+.+.+++.++.++|+.-       +. ..
T Consensus       237 ~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~  316 (405)
T 3k7y_A          237 KNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQ  316 (405)
T ss_dssp             TTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            22333   37799999 9999999864   56666544321    11222344678888887777641       11 34


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy13322        177 LQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       177 ~~~~l~~~~~~l~~~L~  193 (195)
                      +++++++++++|.+.|+
T Consensus       317 ~~~~~~~~R~~l~~~L~  333 (405)
T 3k7y_A          317 LSQRITNNRILFFNKLE  333 (405)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56778999999999887

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.51  E-value=1.5e-13  Score=116.38  Aligned_cols=140  Identities=11%  Similarity=0.091  Sum_probs=98.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-Cc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-SP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~p  118 (195)
                      +++|++.+.+.    ++++|++.+.  ..|...+    +++|+++|++||++||+||+|+ +|+.+.....   .++ .+
T Consensus       152 ~~~l~~~i~~~----~~~~v~~~~~--~~~~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~~---~~~~~~  217 (405)
T 2vi8_A          152 YDDVREKARLH----RPKLIVAAAA--AYPRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGLHP---NPVPYA  217 (405)
T ss_dssp             HHHHHHHHHHH----CCSEEEECCS--SCCSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTSSC---CSTTTC
T ss_pred             HHHHHHHHHhc----CCeEEEEeCC--CCCccCC----HHHHHHHHHHcCCEEEEEcccc-ccccccCcCC---CccccC
Confidence            67888888753    3346776432  2232222    8999999999999999999999 6654321111   122 46


Q ss_pred             chh--hhccccCCCCceEEEEecHHHHHHhhccccccCCCc-hHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHHh
Q psy13322        119 DIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGG-NPVGCVIASTVLDVIKD---EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 di~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~-~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~l~~~L  192 (195)
                      |++  ++||+++++. .|++++++++++.+.......++++ ++..++++.++++.+.+   +++.+++++++++|.+.|
T Consensus       218 di~~~s~sK~~~g~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L  296 (405)
T 2vi8_A          218 HFVTTTTHKTLRGPR-GGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASAL  296 (405)
T ss_dssp             SEEEEESSSTTCCCS-CEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeccccCCCCC-CeEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            766  6789998433 3999999988887765433334443 67777777888887643   678899999999999998


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       297 ~~  298 (405)
T 2vi8_A          297 QN  298 (405)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.51  E-value=3.2e-13  Score=114.57  Aligned_cols=141  Identities=13%  Similarity=0.104  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.+.    ++++|+++.+++.+|.+.+    +++|.++|++||+++|+||+|+ +|...   .....  ..+|
T Consensus       125 ~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~--~~~d  190 (416)
T 3isl_A          125 PEDIIREIKKV----KPKIVAMVHGETSTGRIHP----LKAIGEACRTEDALFIVDAVAT-IGGCE---VKVDE--WKID  190 (416)
T ss_dssp             HHHHHHHHHHH----CCSEEEEESEETTTTEECC----CHHHHHHHHHTTCEEEEECTTT-TTTSC---CCTTT--TTCS
T ss_pred             HHHHHHHHhhC----CCcEEEEEccCCCCceecC----HHHHHHHHHHcCCEEEEECCcc-ccCCC---cchhh--cCCC
Confidence            68888888753    4568999999999998777    8999999999999999999997 33221   11222  2356


Q ss_pred             hhhh--ccccCCCCceEEEEecHHHHHHhhcc-------------------------------------ccc-cCCCchH
Q psy13322        120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTKA-------------------------------------AHF-NTFGGNP  159 (195)
Q Consensus       120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~-------------------------------------~~~-~t~~~~p  159 (195)
                      ++++  +|+++++.++|++++++++++.+...                                     ... ...+.+.
T Consensus       191 ~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (416)
T 3isl_A          191 AAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEAT  270 (416)
T ss_dssp             EEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCH
T ss_pred             EEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCH
Confidence            6554  59987767799999999988777632                                     111 1224577


Q ss_pred             HHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHHhhc
Q psy13322        160 VGCVIASTVLDVIKD---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       160 ~~~~aa~aal~~~~~---~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .+++++.++++.+.+   +++.++++++++++.+.|++
T Consensus       271 ~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~  308 (416)
T 3isl_A          271 TMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA  308 (416)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888887644   47889999999999999875

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.51  E-value=3.6e-13  Score=113.48  Aligned_cols=142  Identities=11%  Similarity=0.046  Sum_probs=104.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+++.   .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...   .....+  .+|
T Consensus       122 ~~~l~~~l~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~--~~d  188 (392)
T 2z9v_A          122 PQAVADMLKAH---PEITVVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGMK---THPEDC--KAD  188 (392)
T ss_dssp             HHHHHHHHHHC---TTCCEEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTBS---CCGGGG--TCS
T ss_pred             HHHHHHHHhcC---CCCcEEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCcc---cccccc--cce
Confidence            67888888753   25678999999999998776    8999999999999999999997 43221   122222  356


Q ss_pred             hhhh--ccccCCCCceEEEEecHHHHHHhhccc--------------------cccCCCchHHHHHHHHHHHHhhcc---
Q psy13322        120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTKAA--------------------HFNTFGGNPVGCVIASTVLDVIKD---  174 (195)
Q Consensus       120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~--------------------~~~t~~~~p~~~~aa~aal~~~~~---  174 (195)
                      ++++  +|+++++..+|++++++++++.+....                    .....+.++.+++++.++++.+.+   
T Consensus       189 ~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~  268 (392)
T 2z9v_A          189 IYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGP  268 (392)
T ss_dssp             EEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             EEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence            6654  698875445699999999887775310                    111234577788888888887643   


Q ss_pred             hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++.++++++++++.+.|++
T Consensus       269 ~~~~~~~~~~~~~l~~~L~~  288 (392)
T 2z9v_A          269 EAVWARHALTAKAMRAGVTA  288 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            46788899999999998875

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.50  E-value=8.7e-14  Score=118.34  Aligned_cols=139  Identities=14%  Similarity=0.105  Sum_probs=103.6

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI  120 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi  120 (195)
                      ++|++.|.     .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...   .....+  .+|+
T Consensus       156 ~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~--~~d~  220 (416)
T 1qz9_A          156 EELPQAID-----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP---VDLHQA--GADY  220 (416)
T ss_dssp             GGHHHHCS-----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHH--TCSE
T ss_pred             HHHHHHhC-----CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC---CChhhc--CCCE
Confidence            44555443     36889999999999998876    8999999999999999999997 54332   122222  3677


Q ss_pred             hhh--ccccCCCCce-EEEEecHHHHHHhhcccc----------------------ccC-CCchHHHHHHHHHHHHhhcc
Q psy13322        121 VTM--AKGIANGFPM-GAVVTTTEIAQVLTKAAH----------------------FNT-FGGNPVGCVIASTVLDVIKD  174 (195)
Q Consensus       121 ~~~--sK~l~~G~~~-g~v~~~~~i~~~l~~~~~----------------------~~t-~~~~p~~~~aa~aal~~~~~  174 (195)
                      +++  +|.+++|+++ |++++++++++.+.....                      ..+ .+.++.+++++.++++.+.+
T Consensus       221 ~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~  300 (416)
T 1qz9_A          221 AIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQ  300 (416)
T ss_dssp             EEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTT
T ss_pred             EEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHh
Confidence            766  5999888887 999999987665544211                      112 24578888888899988753


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 ---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ---~~~~~~l~~~~~~l~~~L~~  194 (195)
                         +++.++++++++++.+.|++
T Consensus       301 ~~~~~~~~~~~~~~~~l~~~L~~  323 (416)
T 1qz9_A          301 TDMASLRRKSLALTDLFIELVEQ  323 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHh
Confidence               56888999999999998864

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.49  E-value=2.3e-13  Score=112.64  Aligned_cols=119  Identities=13%  Similarity=0.003  Sum_probs=89.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-cCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS-NNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~-~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.++     +++++|+++++.+++|.+.+    +++|.++|++ ||+++|+||+|+ .|....   .. .++...
T Consensus        73 ~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~-~~~~~~---~~-~~~~d~  138 (331)
T 1pff_A           73 PGNIEKHLK-----PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFA-SPILTN---PL-DLGVDI  138 (331)
T ss_dssp             TTHHHHTCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTT-HHHHCC---GG-GGTCSE
T ss_pred             HHHHHHhhc-----CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCc-ccccCC---hh-hcCCcE
Confidence            355555543     36889999999999998886    9999999999 999999999998 333222   12 233333


Q ss_pred             chhhhccccC-CCCc-eEEEEecH-HHHHHhhccccc-cCCCchHHHHHHHHHHHHhh
Q psy13322        119 DIVTMAKGIA-NGFP-MGAVVTTT-EIAQVLTKAAHF-NTFGGNPVGCVIASTVLDVI  172 (195)
Q Consensus       119 di~~~sK~l~-~G~~-~g~v~~~~-~i~~~l~~~~~~-~t~~~~p~~~~aa~aal~~~  172 (195)
                      .+.+++|.++ .|.+ +|++++++ ++++.+...... .+.+.+++++.++.++++.+
T Consensus       139 ~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  196 (331)
T 1pff_A          139 VVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTL  196 (331)
T ss_dssp             EEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred             EEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchH
Confidence            3446789998 5778 79999998 898888776555 56677888888887888755

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.49  E-value=2.5e-13  Score=119.56  Aligned_cols=146  Identities=12%  Similarity=-0.006  Sum_probs=97.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc-----ccCCC--ccccc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG-----RTGDN--YWGFE  112 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g-----r~G~~--~~~~~  112 (195)
                      +++|++.|+     .++++|+++.+++++|.+.+    +++|+++|++||++||+||+|+++.     +.|..  .+.+.
T Consensus       229 ~~~Le~~i~-----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~  299 (514)
T 3mad_A          229 VAAMREAIT-----PNTVVVAGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFR  299 (514)
T ss_dssp             HHHHHHHCC-----TTEEEEEEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTT
T ss_pred             HHHHHHHhc-----cCCEEEEEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccccc
Confidence            677887775     36889999999999998876    9999999999999999999999863     33431  11223


Q ss_pred             ccCCCcchhhhccccCCCCceEEEEecHHHHHHhhccc--------------cccCCCchHHHHHHHHHHHHhhcchhHH
Q psy13322        113 MHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA--------------HFNTFGGNPVGCVIASTVLDVIKDEELQ  178 (195)
Q Consensus       113 ~~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--------------~~~t~~~~p~~~~aa~aal~~~~~~~~~  178 (195)
                      ..++...+.+++|.+.+|.++|+++++++.........              .++.+..+.+++.+++..+....-+++.
T Consensus       300 ~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~  379 (514)
T 3mad_A          300 LEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDAT  379 (514)
T ss_dssp             STTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHH
Confidence            33443333455699888888999998876544322110              1111112233444444444332225778


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      +++.++++++.+.|++
T Consensus       380 ~~~~~~~~~l~~~L~~  395 (514)
T 3mad_A          380 RRILQAADRLKAGVRA  395 (514)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8999999999999875

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.49  E-value=2.2e-13  Score=116.07  Aligned_cols=136  Identities=12%  Similarity=0.060  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.++     .++++|++|++.+++|.+.+    +++|.++|++||+++|+||+|+++ ..+. .  .   +..+|
T Consensus       134 ~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~-~~~~-~--~---~~~~d  197 (389)
T 3acz_A          134 VEKVKAAWK-----PNTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFTSP-CFLK-P--L---ELGAD  197 (389)
T ss_dssp             HHHHHHTCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT-TTCC-G--G---GTTCS
T ss_pred             HHHHHHhcC-----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc-cccC-c--c---ccCCe
Confidence            456666554     36889999999999998886    999999999999999999999854 2222 1  1   24567


Q ss_pred             hh--hhccccC-CCCce-EEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IV--TMAKGIA-NGFPM-GAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~--~~sK~l~-~G~~~-g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ++  +++|.++ .|.++ |++++++ ++++.+.......+...+|+.+++++++++.+.  ...++..++.+.+.+.|+
T Consensus       198 i~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~  274 (389)
T 3acz_A          198 IALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLE  274 (389)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             EEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHH
Confidence            76  6789999 46787 9999998 888877654322334457888888888887652  223444445555555443

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.48  E-value=1.6e-13  Score=117.91  Aligned_cols=139  Identities=12%  Similarity=0.001  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     .++++|++|++++++|.+.+    +++|+++|++||+++|+||+|+. +....    ...++....
T Consensus       142 ~~~l~~~i~-----~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~-~~~~~----~~~~g~div  207 (400)
T 3nmy_A          142 PAAFKAAIR-----ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS-PMLQR----PLSLGADLV  207 (400)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH-HHHCC----GGGGTCSEE
T ss_pred             HHHHHHHhc-----cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc-cccCC----hhhcCCcEE
Confidence            567777664     37889999999999998886    99999999999999999999972 22222    112344444


Q ss_pred             hhhhccccCC-CCce-E-EEE-ecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIAN-GFPM-G-AVV-TTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~-G~~~-g-~v~-~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.+++|.+++ |.++ | +++ .++++.+.+.......+...+|+.+++++..++.+.  ...++..++...+.+.|++
T Consensus       208 ~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l~--~r~~~~~~~a~~l~~~L~~  284 (400)
T 3nmy_A          208 VHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLP--LRMRAHCENALALAQWLET  284 (400)
T ss_dssp             EEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTT
T ss_pred             EecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHHHHHc
Confidence            5568899995 4554 4 344 466788877665555556678998888888887653  3456667777777777653

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.48  E-value=1.5e-13  Score=118.54  Aligned_cols=139  Identities=14%  Similarity=0.057  Sum_probs=97.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.+.     .++++|++|++++++|.+.+    +++|+++|++||++||+||+|+ .+....    ...+|....
T Consensus       156 ~~~l~~ai~-----~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~-~~~~~~----~~~~g~div  221 (414)
T 3ndn_A          156 LSQWERALS-----VPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA-TPLLQQ----GFPLGVDVV  221 (414)
T ss_dssp             HHHHHHHTS-----SCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT-HHHHCC----CGGGTCSEE
T ss_pred             HHHHHHhcC-----CCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCc-ccccCC----chhcCCCeE
Confidence            577777765     35679999999999998876    9999999999999999999997 332222    123455444


Q ss_pred             hhhhccccCC-C-CceEEEEecHHHHH-HhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIAN-G-FPMGAVVTTTEIAQ-VLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~-G-~~~g~v~~~~~i~~-~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.++||.+++ | +++|+++++++.+. .+...........+|+.+++++..++.+.  ...++..++.+++.+.|++
T Consensus       222 ~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~  297 (414)
T 3ndn_A          222 VYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLA--IRVQHSNASAQRIAEFLNG  297 (414)
T ss_dssp             EEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             eccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence            5567899985 7 78999999987665 44432222222346777777777776653  3456666777777777653

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.48  E-value=2.2e-13  Score=117.90  Aligned_cols=149  Identities=15%  Similarity=0.129  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC---c-------cccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG---F-------GRTGDNYW  109 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g---~-------gr~G~~~~  109 (195)
                      +++|++.|++... +++++|+++++++.+|..+++.++|++|+++|++||++||+||+|..   +       ++.|.   
T Consensus       169 ~~~le~~i~~~~~-~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~---  244 (467)
T 1ax4_A          169 IKKLKENIAQHGA-DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA---  244 (467)
T ss_dssp             HHHHHHHHHHHCG-GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC---
T ss_pred             HHHHHHHHHhcCC-CCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC---
Confidence            6889998886532 37899999999998866788899999999999999999999999762   0       22222   


Q ss_pred             cccccC----CCcchh--hhccccCCCCce-EEEEec-H-HHHHHhhccc----cccCCCchHHHH-HHHHHHHHhhcch
Q psy13322        110 GFEMHG----VSPDIV--TMAKGIANGFPM-GAVVTT-T-EIAQVLTKAA----HFNTFGGNPVGC-VIASTVLDVIKDE  175 (195)
Q Consensus       110 ~~~~~~----~~pdi~--~~sK~l~~G~~~-g~v~~~-~-~i~~~l~~~~----~~~t~~~~p~~~-~aa~aal~~~~~~  175 (195)
                      .....+    ..+|++  ++||+++  .|+ |+++++ + ++++.+....    ...++++.+..+ ++..++|+...++
T Consensus       245 ~~~~~~~~~~~~~d~~~~s~sK~~g--~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  322 (467)
T 1ax4_A          245 TIKEVIFDMYKYADALTMSAKKDPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEE  322 (467)
T ss_dssp             CHHHHHHHHGGGCSEEEEETTSTTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCH
T ss_pred             chhhhhhhhccccceEEEeccccCC--CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhh
Confidence            111111    124554  4468775  453 566666 5 7776654321    123444444333 3333467655444


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      +..++..+++++|.+.|++
T Consensus       323 ~~~~~~~~~~~~l~~~L~~  341 (467)
T 1ax4_A          323 EYLHYRIGQVKYLGDRLRE  341 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHh
Confidence            4555666788888888864

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.48  E-value=3e-13  Score=114.63  Aligned_cols=138  Identities=12%  Similarity=0.013  Sum_probs=100.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|+++++.+++|.+.+    +++|.++|++||+++|+||+|+ +|...   +....++  +|
T Consensus       155 ~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~~--~d  219 (406)
T 3cai_A          155 TWQWESLIS-----KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL---LDIRETD--AD  219 (406)
T ss_dssp             GGGHHHHCC-----TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC---CCHHHHC--CS
T ss_pred             HHHHHHHhC-----CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC---CCchhcC--CC
Confidence            466777664     36889999999999998877    8999999999999999999997 33221   2222233  56


Q ss_pred             hh--hhccccCCCCceE-EEEecHHHHHHhhccccc--------c-CCCchHHHHHHHHHHHHhhcc-------------
Q psy13322        120 IV--TMAKGIANGFPMG-AVVTTTEIAQVLTKAAHF--------N-TFGGNPVGCVIASTVLDVIKD-------------  174 (195)
Q Consensus       120 i~--~~sK~l~~G~~~g-~v~~~~~i~~~l~~~~~~--------~-t~~~~p~~~~aa~aal~~~~~-------------  174 (195)
                      ++  +++|.+|.+  +| ++++++++++.+......        . ..+.++.+++++.++++.+.+             
T Consensus       220 ~~~~s~~K~~g~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~  297 (406)
T 3cai_A          220 VVTVNAHAWGGPP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERL  297 (406)
T ss_dssp             EEEEEGGGGTSCS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHH
T ss_pred             EEEeehhhhcCCC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            65  457987644  88 999999888777554210        1 233577788788888887643             


Q ss_pred             ----hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 ----EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ----~~~~~~l~~~~~~l~~~L~~  194 (195)
                          +++.++++++++++.+.|++
T Consensus       298 ~~~~~~~~~~~~~~~~~l~~~L~~  321 (406)
T 3cai_A          298 AVSMQSADAYLNRVFDYLMVSLRS  321 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhc
Confidence                46778888999999998875

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.47  E-value=2.4e-13  Score=117.45  Aligned_cols=151  Identities=12%  Similarity=0.008  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC----------ccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG----------FGRTGDNY  108 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g----------~gr~G~~~  108 (195)
                      +++|++.+.+... ..+++|++++ .++.+| .+.+.+++++|+++|++||++||+||+|+.          +.+.|...
T Consensus       160 ~~~l~~~i~~~t~-~~~~~v~l~~p~n~ptG-~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~  237 (456)
T 2ez2_A          160 LKKLQKLIDEKGA-ENIAYICLAVTVNLAGG-QPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSI  237 (456)
T ss_dssp             HHHHHHHHHHHCG-GGEEEEEEESSBTTTTS-BCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCH
T ss_pred             HHHHHHHHHhccc-cceeEEEEeccCCCCCC-ccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcch
Confidence            6888888875421 2578999995 444788 477889999999999999999999999984          34555411


Q ss_pred             ccc-cccCCCcchhhhc-cccC-CCCceEEEEe-cHHHHHHhhccc---cc-cCC-CchHHHHHH-HHHHHHhhcchhHH
Q psy13322        109 WGF-EMHGVSPDIVTMA-KGIA-NGFPMGAVVT-TTEIAQVLTKAA---HF-NTF-GGNPVGCVI-ASTVLDVIKDEELQ  178 (195)
Q Consensus       109 ~~~-~~~~~~pdi~~~s-K~l~-~G~~~g~v~~-~~~i~~~l~~~~---~~-~t~-~~~p~~~~a-a~aal~~~~~~~~~  178 (195)
                      ..+ +..+..+|++++| |.++ .| ++|++++ ++++++.+....   ++ .++ +.++..+.+ +.+.++.++ ++..
T Consensus       238 ~~~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~  315 (456)
T 2ez2_A          238 AEIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYI  315 (456)
T ss_dssp             HHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHH
T ss_pred             hhhhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHH
Confidence            011 1123346887774 5565 34 5789888 678877665321   11 122 224344444 555555543 4567


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++.+++.+++.+.|++
T Consensus       316 ~~~~~~~~~l~~~L~~  331 (456)
T 2ez2_A          316 EHRVKQVRYLGDKLKA  331 (456)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            7777888888888764

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.47  E-value=4.5e-13  Score=114.90  Aligned_cols=138  Identities=12%  Similarity=0.094  Sum_probs=97.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|++|++.+++|.+.+    +++|+++|++||+++|+||+|++++....      .....+|
T Consensus       130 ~~~l~~~i~-----~~~~~v~~~~~~n~~G~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~~~------~~~~~~d  194 (412)
T 2cb1_A          130 PEAVREALS-----AKTRAVFVETVANPALLVPD----LEALATLAEEAGVALVVDNTFGAAGALCR------PLAWGAH  194 (412)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGTTTTSCC------GGGGTCS
T ss_pred             HHHHHHHhc-----cCCeEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccccccCC------ccccCCe
Confidence            567777664     36889999999999998886    99999999999999999999986533222      1123467


Q ss_pred             hhh--hccccC-CCCceEEEEecH----------------------------HHHHHhhccc-cccCCCchHHHHHHHHH
Q psy13322        120 IVT--MAKGIA-NGFPMGAVVTTT----------------------------EIAQVLTKAA-HFNTFGGNPVGCVIAST  167 (195)
Q Consensus       120 i~~--~sK~l~-~G~~~g~v~~~~----------------------------~i~~~l~~~~-~~~t~~~~p~~~~aa~a  167 (195)
                      +++  ++|.++ .|+++|++++.+                            ++.+.++... ....+..+|.+++.++.
T Consensus       195 i~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~  274 (412)
T 2cb1_A          195 VVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQ  274 (412)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHH
T ss_pred             EEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHc
Confidence            775  689998 577777776543                            3344443322 11223557888888888


Q ss_pred             HHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        168 VLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       168 al~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .++.+  +...++..++.++|.+.|++
T Consensus       275 ~l~~l--~~~~~~~~~~~~~l~~~L~~  299 (412)
T 2cb1_A          275 GLETV--ALRVARMSETARFLAERLQG  299 (412)
T ss_dssp             HGGGH--HHHHHHHHHHHHHHHHHHHT
T ss_pred             CCchH--HHHHHHHHHHHHHHHHHHHc
Confidence            87766  33456667788888888764

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.47  E-value=3.7e-13  Score=112.68  Aligned_cols=138  Identities=16%  Similarity=0.222  Sum_probs=101.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC--CEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN--GLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~--~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      +++|++.+.     .++++|+++++++++|.+.+    +++|.++|++||  ++||+||+|+ +|..   ...+.  ...
T Consensus       129 ~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~---~~~~~--~~~  193 (384)
T 1eg5_A          129 LEELEKLVD-----EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI---PFSLE--KLE  193 (384)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS---CCCCT--TTC
T ss_pred             HHHHHHHhC-----CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc---ccCch--hcC
Confidence            567777664     36789999999999998877    899999999999  9999999998 5432   11222  234


Q ss_pred             cchhhhc--cccC-CCCceEEEEecHHH--HHHhhccc---cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH
Q psy13322        118 PDIVTMA--KGIA-NGFPMGAVVTTTEI--AQVLTKAA---HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQ  187 (195)
Q Consensus       118 pdi~~~s--K~l~-~G~~~g~v~~~~~i--~~~l~~~~---~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~  187 (195)
                      +|++++|  |.+| .|  +|++++++++  ...+....   ...+++.++++++++.++|+.+.+  +++.+++++++++
T Consensus       194 ~di~~~s~sK~~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  271 (384)
T 1eg5_A          194 VDYASFSAHKFHGPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSK  271 (384)
T ss_dssp             CSEEEEEGGGGTSCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCEEEecHHHhcCCCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            6777665  9887 46  7999998875  22221110   124456788999999999987543  6788899999999


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      +.+.|++
T Consensus       272 l~~~L~~  278 (384)
T 1eg5_A          272 LVSGLMN  278 (384)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhCC
Confidence            9998864

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.46  E-value=5.3e-13  Score=110.83  Aligned_cols=131  Identities=18%  Similarity=0.125  Sum_probs=93.8

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcchhhhccccC-CCCc
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIA-NGFP  132 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi~~~sK~l~-~G~~  132 (195)
                      ++++|++....+.+|.+. +.+++++|+++|   | ++|+||+|++++. +. .... ...+....+.++||.+| +|++
T Consensus       138 ~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~---~-~li~De~~~~~~~-~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r  210 (335)
T 1uu1_A          138 EGDVVFIPNPNNPTGHVF-EREEIERILKTG---A-FVALDEAYYEFHG-ES-YVDFLKKYENLAVIRTFSKAFSLAAQR  210 (335)
T ss_dssp             TTEEEEEESSCTTTCCCC-CHHHHHHHHHTT---C-EEEEECTTHHHHC-CC-CGGGGGTCSSEEEEEESTTTTTCGGGC
T ss_pred             CCCEEEEeCCCCCCCCCC-CHHHHHHHHHhC---C-EEEEECcchhhcc-hh-HHHHhhhCCCEEEEecchhhcCCcccC
Confidence            345666544477888654 666666666655   8 9999999997743 22 2221 22222334568899999 8999


Q ss_pred             eEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322        133 MGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       133 ~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +|++++++++++.+....  .+++.|+++++++.++|+..+ -+++.++++++++++.+.|++
T Consensus       211 ~G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  271 (335)
T 1uu1_A          211 VGYVVASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALRE  271 (335)
T ss_dssp             CEEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988876543  346789999999999998642 256778899999999988864

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.46  E-value=2.6e-13  Score=117.67  Aligned_cols=139  Identities=15%  Similarity=0.045  Sum_probs=94.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIA-ESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ-TGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aaviv-Epv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~-~g~gr~G~~~~~~~~~~~~  117 (195)
                      +++|++.+.+..    .++|++ .|..+..+       ++++|+++|++||++||+||+| .|+.+.|. ....  .. .
T Consensus       174 ~~~l~~~i~~~~----~~~i~~~~~~~~~~~-------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~-~~~~--~~-~  238 (447)
T 3h7f_A          174 MDAVRATALEFR----PKVIIAGWSAYPRVL-------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGL-HPSP--VP-H  238 (447)
T ss_dssp             HHHHHHHHHHHC----CSEEEEECSSCCSCC-------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SCCS--TT-T
T ss_pred             HHHHHHHHHhcC----CeEEEEcCCCCCCcc-------CHHHHHHHHHHcCCEEEEECCchhhhhcCCC-CCCC--CC-C
Confidence            688888887543    235666 56655433       4999999999999999999998 45544453 2111  11 2


Q ss_pred             cchh--hhccccCCCCceEEEEecHHHHHHhhccccccCCCc-hHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHH
Q psy13322        118 PDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGG-NPVGCVIASTVLDVIKD---EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       118 pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~-~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~l~~~  191 (195)
                      .|++  ++||+++ |+++|++++++++++.+......+++++ ++..++++.+++..+.+   +++.+++.+++++|.+.
T Consensus       239 ~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  317 (447)
T 3h7f_A          239 ADVVSTTVHKTLG-GGRSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADR  317 (447)
T ss_dssp             CSEEEEESSGGGC-CCSCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEecCCcCCC-CCCeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            3555  5689995 7889999999988887766544444443 33445555566665433   46788899999999988


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       318 L~~  320 (447)
T 3h7f_A          318 LMA  320 (447)
T ss_dssp             HTS
T ss_pred             HHh
Confidence            864

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.45  E-value=8.1e-13  Score=111.38  Aligned_cols=141  Identities=12%  Similarity=0.052  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+++.    ++++|+++.+.+++|.+.+    +++|.++|++||+++|+||+|+ +|...   ....  ...+|
T Consensus       133 ~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~~---~~~~--~~~~d  198 (393)
T 2huf_A          133 LDEIRDALLIH----KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGAP---MFMD--RWEID  198 (393)
T ss_dssp             HHHHHHHHHHH----CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTT--TTTCS
T ss_pred             HHHHHHHHhcc----CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC---cchh--hcCcc
Confidence            67888888742    4558888999999998776    8999999999999999999986 54321   1222  22467


Q ss_pred             hhhh--ccccCCCCceEEEEecHHHHHHhhccc-----c-----------------ccCC-CchHHHHHHHHHHHHhhcc
Q psy13322        120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTKAA-----H-----------------FNTF-GGNPVGCVIASTVLDVIKD  174 (195)
Q Consensus       120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~-----~-----------------~~t~-~~~p~~~~aa~aal~~~~~  174 (195)
                      ++++  +|+++++..+|++++++++++.+....     .                 .+++ +.+..+++++.++++.+.+
T Consensus       199 ~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~  278 (393)
T 2huf_A          199 AMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACE  278 (393)
T ss_dssp             EEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            6655  599764333599999999888876430     0                 1122 3466777777788887643


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 ---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ---~~~~~~l~~~~~~l~~~L~~  194 (195)
                         +++.++++++++++.+.|++
T Consensus       279 ~~~~~~~~~~~~~~~~l~~~L~~  301 (393)
T 2huf_A          279 EGLPALIARHEDCAKRLYRGLQD  301 (393)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHH
Confidence               46788899999999999875

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.44  E-value=8.9e-13  Score=111.96  Aligned_cols=140  Identities=12%  Similarity=0.077  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.+.+.    ++++|++.+  +..|...+    +++|+++|++||++||+||+|. |+.+.|. ....  .. ..
T Consensus       153 ~~~l~~~i~~~----~~~~v~~~~--~~~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~~--~~-~~  218 (417)
T 3n0l_A          153 YEKVREIAKKE----KPKLIVCGA--SAYARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGE-HPSP--FP-YA  218 (417)
T ss_dssp             HHHHHHHHHHH----CCSEEEECC--SSCCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SCCC--TT-TC
T ss_pred             HHHHHHHHHhc----CCeEEEECC--cccCccCC----HHHHHHHHHHcCCEEEEECccchhhhhccc-CCCc--cc-cc
Confidence            68888888753    334566443  23476655    9999999999999999999985 3333332 1111  11 34


Q ss_pred             chhhhc--cccCCCCceEEEEec-HHHHHHhhcccc-ccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHHHHHHHHH
Q psy13322        119 DIVTMA--KGIANGFPMGAVVTT-TEIAQVLTKAAH-FNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       119 di~~~s--K~l~~G~~~g~v~~~-~~i~~~l~~~~~-~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~~~~l~~~  191 (195)
                      |++++|  |+| +|+++|+++++ +++++.+..... ..+.+.++..++++.+++... ++  +++.+++.+++++|.+.
T Consensus       219 di~~~s~sK~l-~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  297 (417)
T 3n0l_A          219 HVVSSTTHKTL-RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANV  297 (417)
T ss_dssp             SEEEEESSTTT-CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEeeCcccc-CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            777665  999 56778999998 788887765533 333344666777777777663 22  46778888888999988


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       298 L~~  300 (417)
T 3n0l_A          298 LMD  300 (417)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            864

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.43  E-value=5.7e-13  Score=113.10  Aligned_cols=139  Identities=16%  Similarity=0.127  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAE-SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivE-pv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~  117 (195)
                      +++|++.+.+.    ++++|+++ |.+   |...+    +++|+++|++||++||+||+|+ |+.+.|. +...  .. .
T Consensus       158 ~~~l~~~i~~~----~~~~v~~~~~~~---~~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~-~~~~--~~-~  222 (420)
T 3gbx_A          158 YDEMAKLAKEH----KPKMIIGGFSAY---SGVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGV-YPNP--VP-H  222 (420)
T ss_dssp             HHHHHHHHHHH----CCSEEEECCTTC---CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTS-SCCS--TT-T
T ss_pred             HHHHHHHHHhc----CCeEEEEecCcc---CCccC----HHHHHHHHHHcCCEEEEECCcchhceeccc-CCcc--cc-c
Confidence            68888888764    35577774 444   33333    8999999999999999999985 4444443 2111  12 2


Q ss_pred             cchhh--hccccCCCCceEEEEecH---HHHHHhhccccccCCCc-hHHHHHHHHHHHHhh-cc--hhHHHHHHHHHHHH
Q psy13322        118 PDIVT--MAKGIANGFPMGAVVTTT---EIAQVLTKAAHFNTFGG-NPVGCVIASTVLDVI-KD--EELQYNCKQVSAQI  188 (195)
Q Consensus       118 pdi~~--~sK~l~~G~~~g~v~~~~---~i~~~l~~~~~~~t~~~-~p~~~~aa~aal~~~-~~--~~~~~~l~~~~~~l  188 (195)
                      +|+++  +||+++ |.++|++++++   ++++.+....+..+++. +...++++.+++... ++  +++.++++++++++
T Consensus       223 ~di~~~s~sK~~~-g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l  301 (420)
T 3gbx_A          223 AHVVTTTTHKTLA-GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAM  301 (420)
T ss_dssp             SSEEEEESSGGGC-SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeecccCCC-CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence            78876  569997 44568999987   78777765444433433 344444444455433 32  56788899999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|++
T Consensus       302 ~~~L~~  307 (420)
T 3gbx_A          302 VEVFLN  307 (420)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998864

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.43  E-value=3.2e-12  Score=107.12  Aligned_cols=141  Identities=14%  Similarity=0.097  Sum_probs=101.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--CCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--NGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      +++|++.+++.    ++++|+++++++++|.+.+    +++|.++|++|  |+++|+||+|+ +|..   .+....  ..
T Consensus       126 ~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~---~~~~~~--~~  191 (385)
T 2bkw_A          126 LELITEKLSQN----SYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE---EFEFDE--WG  191 (385)
T ss_dssp             HHHHHHHHHHS----CCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS---CCCTTT--TT
T ss_pred             HHHHHHHHhcC----CCCEEEEEccCCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc---cccccc--cC
Confidence            67888888752    5668999999999998876    89999999999  99999999997 4322   112222  24


Q ss_pred             cchhhh--ccccCCCCceEEEEecHHHHH-Hhhc----------------------ccc--cc-CCCchHHHHHHHHHHH
Q psy13322        118 PDIVTM--AKGIANGFPMGAVVTTTEIAQ-VLTK----------------------AAH--FN-TFGGNPVGCVIASTVL  169 (195)
Q Consensus       118 pdi~~~--sK~l~~G~~~g~v~~~~~i~~-~l~~----------------------~~~--~~-t~~~~p~~~~aa~aal  169 (195)
                      +|++++  +|+++++..+|++++++++++ .+..                      ...  .. ..+.++.+++++.+++
T Consensus       192 ~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al  271 (385)
T 2bkw_A          192 VDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVAL  271 (385)
T ss_dssp             CSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHH
T ss_pred             ceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHH
Confidence            576655  698875444699999988766 4421                      000  11 1346788888888899


Q ss_pred             Hhhcc---hhHHHHHHHHHHHHHHHh-hc
Q psy13322        170 DVIKD---EELQYNCKQVSAQIIGYL-RV  194 (195)
Q Consensus       170 ~~~~~---~~~~~~l~~~~~~l~~~L-~~  194 (195)
                      +.+.+   +++.++++++++++.+.| ++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  300 (385)
T 2bkw_A          272 KEILEEGLHKRWDLHREMSDWFKDSLVNG  300 (385)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHccHHHHHHHHHHHHHHHHHHHHHh
Confidence            87643   456788999999999998 64

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.42  E-value=1.5e-12  Score=108.49  Aligned_cols=132  Identities=11%  Similarity=0.018  Sum_probs=95.1

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC---CcchhhhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV---SPDIVTMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~---~pdi~~~sK~l~-~G  130 (195)
                      ++++|+++..++.+|.+.+ .+.+.+|.+.|+++  +||+||+|+++++.+. .. ....+.   ...+.++||.++ +|
T Consensus       129 ~~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~-~~-~~~~~~~~~~i~~~S~sK~~~~~G  203 (350)
T 3fkd_A          129 NMDFCWLCNPNNPDGRLLQ-RTEILRLLNDHPDT--TFVLDQSYVSFTTEEV-IR-PADIKGRKNLVMVYSFSHAYGIPG  203 (350)
T ss_dssp             TCSEEEEESSCTTTCCCCC-HHHHHHHHHHCTTS--EEEEECTTTTSCSSCC-CC-GGGGTTCSSEEEEEESHHHHSCGG
T ss_pred             CCCEEEEeCCCCCcCCCCC-HHHHHHHHHhCCCC--EEEEECchhhhccCcc-hh-hHHhhcCCCEEEEecCchhccCcc
Confidence            5667888888888997655 45566666555544  9999999998877664 21 122222   223447799999 89


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++|++++++++++.+....  .+++.++++++++.++|+...  .+.+.+.. ++++++.+.|++
T Consensus       204 ~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~L~~  266 (350)
T 3fkd_A          204 LRIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLPIRKWQ-RNTVDFITALNR  266 (350)
T ss_dssp             GCCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCCHHHHH-HHHHHHHHHHHH
T ss_pred             hheEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence            99999999999999887653  356778999999999998654  23344444 888888888865

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.42  E-value=2.1e-12  Score=106.62  Aligned_cols=131  Identities=11%  Similarity=0.108  Sum_probs=96.3

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccC-CCCce
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIA-NGFPM  133 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~-~G~~~  133 (195)
                      +.++|++....+++|.+.+    ++++.++|+++++ +|+||+|.+|+..+..  .....+....+.++||.+| .|+++
T Consensus       135 ~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~--~~~~~~~~i~~~S~sK~~g~~G~r~  207 (337)
T 3p1t_A          135 RDDCVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRAR--GLAYGENELVFRSFSKSYGLAGLRL  207 (337)
T ss_dssp             TTEEEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSS--CCCCBTTEEEEEESSSTTCCTTTCC
T ss_pred             CCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhcccccc--ccccCCCEEEEeeCchhccCcchhe
Confidence            4568888888899998777    7778889999997 5669999987654431  1111111122447789999 89999


Q ss_pred             EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++++++++.+....  .+++.++++++++.++|+..+. ++..+++.++++++.+.|++
T Consensus       208 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  267 (337)
T 3p1t_A          208 GALFGPSELIAAMKRKQ--WFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRG  267 (337)
T ss_dssp             EEEECCHHHHHHHHTTS--CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCHHHHHHHHhhc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998887643  3456788899988888876432 45667778888888888875

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.42  E-value=1.6e-12  Score=113.81  Aligned_cols=117  Identities=16%  Similarity=0.191  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|+++++.+.+|.+.+    +++|.++|++||+++|+||+|.. |....   ...   ...|
T Consensus       207 ~~~l~~~i~-----~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~~~-g~~~~---~~~---~~~d  270 (464)
T 1ibj_A          207 LDEVAAAIG-----PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS-PVLSR---PLE---LGAD  270 (464)
T ss_dssp             HHHHHHHCC-----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC-TTTCC---GGG---TTCS
T ss_pred             HHHHHHHhc-----cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc-cccCC---hhh---cCCE
Confidence            577777664     37889999999999998885    99999999999999999999973 22111   122   2356


Q ss_pred             hh--hhccccCC--CCceEEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHhh
Q psy13322        120 IV--TMAKGIAN--GFPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI  172 (195)
Q Consensus       120 i~--~~sK~l~~--G~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~  172 (195)
                      ++  +++|++++  |+++|++++++ ++++.+.........+.+++++.+++++|+.+
T Consensus       271 iv~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~  328 (464)
T 1ibj_A          271 IVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM  328 (464)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH
T ss_pred             EEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhH
Confidence            66  57899984  88999999984 78777765432233445788888888888754

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.42  E-value=1.5e-12  Score=109.82  Aligned_cols=141  Identities=13%  Similarity=0.083  Sum_probs=103.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+++.    ++++|+++.+.+.+|.+.+    +++|.++|++||+++|+||+|+ +|...   ....  ...+|
T Consensus       132 ~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~Dea~~-~g~~~---~~~~--~~~~d  197 (396)
T 2ch1_A          132 LETLARAIELH----QPKCLFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCGVP---FYMD--KWEID  197 (396)
T ss_dssp             HHHHHHHHHHH----CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTT--TTTCC
T ss_pred             HHHHHHHHHhC----CCCEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEEcccc-ccCCc---cchh--hcCcC
Confidence            67888888753    4568888999899998777    8999999999999999999998 54321   1222  23467


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhccc-----------------------cccCCCchHHHHHHHHHHHHhhcc
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAA-----------------------HFNTFGGNPVGCVIASTVLDVIKD  174 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~-----------------------~~~t~~~~p~~~~aa~aal~~~~~  174 (195)
                      ++++|  |.++++..+|++++++++++.+....                       ....++.+..+++++.++|+.+.+
T Consensus       198 ~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~  277 (396)
T 2ch1_A          198 AVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAE  277 (396)
T ss_dssp             EEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            77665  99986656799999998887764310                       111234577788888899987632


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 ---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ---~~~~~~l~~~~~~l~~~L~~  194 (195)
                         +++.++++++++++.+.|++
T Consensus       278 ~~~~~~~~~~~~~~~~l~~~L~~  300 (396)
T 2ch1_A          278 EGLENQIKRRIECAQILYEGLGK  300 (396)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Confidence               46788899999999998875

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.41  E-value=2e-12  Score=110.51  Aligned_cols=136  Identities=14%  Similarity=0.110  Sum_probs=96.4

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc----CCEEEEeccccCccccCCCcccccccCC
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN----NGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~----~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      ++|++.+.     .++++|+++++.+++|.+.+    +++|.++|++|    |+++|+||+|+.+.+ .. ..   .++ 
T Consensus       129 ~~l~~~i~-----~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~~~~-~~-~~---~~~-  193 (393)
T 1n8p_A          129 NDLPQLIK-----ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSPYI-SN-PL---NFG-  193 (393)
T ss_dssp             HHHHHHSC-----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CC-GG---GGT-
T ss_pred             HHHHHhcc-----cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCcccccc-CC-HH---HcC-
Confidence            66766654     36889999999999998886    99999999999    999999999986543 22 21   123 


Q ss_pred             Ccchh--hhccccC-CCCce-EEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy13322        117 SPDIV--TMAKGIA-NGFPM-GAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGY  191 (195)
Q Consensus       117 ~pdi~--~~sK~l~-~G~~~-g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~  191 (195)
                       .|++  +++|.++ .|+++ |+++++ +++++.+...........++..++++.++++.+.  ...++..++.+.+.+.
T Consensus       194 -~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~  270 (393)
T 1n8p_A          194 -ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLH--LRVRQAALSANKIAEF  270 (393)
T ss_dssp             -CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHH
T ss_pred             -CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHH
Confidence             5666  6789999 58888 888885 7888877654322223346777777777777542  2345555666666666


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       271 L~~  273 (393)
T 1n8p_A          271 LAA  273 (393)
T ss_dssp             HTS
T ss_pred             HHh
Confidence            543

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.40  E-value=3.6e-12  Score=111.13  Aligned_cols=139  Identities=11%  Similarity=0.016  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++++|++.|+.    +.+++|++|++.+++|.+.+    +++|.++|++||+++|+||+|+.. ....      ...+.+
T Consensus       188 d~~~l~~ai~~----~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~-~~~~------~~~~g~  252 (445)
T 1qgn_A          188 DVGALELALNQ----KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP-LNQK------ALALGA  252 (445)
T ss_dssp             CHHHHHHHHHH----SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT-TTCC------TTTTTC
T ss_pred             CHHHHHHHhcc----CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc-ccCC------ccccCC
Confidence            36888888873    24489999999999998876    999999999999999999999732 2111      123457


Q ss_pred             chhh--hccccCC-C-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVT--MAKGIAN-G-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~--~sK~l~~-G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+++  ++|.+++ | .++|++++++++++.+...........+|+.+..++.+++.+.  ..+++..++.+++.+.|++
T Consensus       253 Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~  330 (445)
T 1qgn_A          253 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEA  330 (445)
T ss_dssp             SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence            8775  6799984 3 3799999999988877643322223346777777777777653  2345555666677776654

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.40  E-value=8.3e-13  Score=110.16  Aligned_cols=142  Identities=11%  Similarity=-0.091  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc--ccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG--RTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g--r~G~~~~~~~~~~~~  117 (195)
                      +++|++.    .  +++++|++++..+..|-.+++.+++++|.++|++||++||+||+|..+.  ..|.   ....+...
T Consensus       128 ~~~l~~~----~--~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~~  198 (359)
T 3pj0_A          128 IDDIKSL----R--EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQK---SAEEICAL  198 (359)
T ss_dssp             HHHHHTC----S--SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTC---CHHHHHTT
T ss_pred             HHHHHhc----c--CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCC---CHHHhhcc
Confidence            4555554    1  4778999999887765467888999999999999999999999986321  1222   11111122


Q ss_pred             cchh--hhccccCCCCceEEEEecHHHHHHhhccc--cc-cCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322        118 PDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAA--HF-NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       118 pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~-~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L  192 (195)
                      .|++  ++||+++++. .+++++++++++.+....  .. .++..++++ +++.++++...  +..++..++++++.+.|
T Consensus       199 ~d~~~~s~sK~~~~~~-gg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~a~~~~l~~~~--~~~~~~~~~~~~l~~~L  274 (359)
T 3pj0_A          199 FDSVYVSFYKGIGGIA-GAILAGNDDFVQEAKIWKRRYGGDLISLYPYI-LSADYYFEKRI--GKMAEYFEAAKGLAERF  274 (359)
T ss_dssp             CSEEEEESSSTTCCSS-CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHH-HHHHHHHHHHG--GGHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeccccCCCcc-eEEEECCHHHHHHHHHHHHHhCCCcchhHHHH-HHHHHHHHHHH--HHhHHHHHHHHHHHHHH
Confidence            3544  7789998542 278888999988876432  22 233344444 44446665432  34456788888888888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       275 ~~  276 (359)
T 3pj0_A          275 NS  276 (359)
T ss_dssp             HT
T ss_pred             hh
Confidence            75

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.39  E-value=1e-12  Score=113.14  Aligned_cols=138  Identities=12%  Similarity=0.025  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.|+     .++++|++|++.+++|.+.+    +++|+++|++||+++|+||+|+++|+.+. .+     +..+|
T Consensus       134 ~~~l~~~i~-----~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~g~~~~-~~-----~~~~D  198 (421)
T 2ctz_A          134 PEEFLALTD-----EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGMGGYLLR-PL-----AWGAA  198 (421)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGGGTSCC-GG-----GGTCS
T ss_pred             HHHHHHhhc-----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccccccCC-cc-----ccCCe
Confidence            577777665     37889999999999998877    99999999999999999999965776554 22     23478


Q ss_pred             hh--hhccccCC-CCceEEEEec--H-HH----HHHhhcc---c-----------------------cccCCCchHHHHH
Q psy13322        120 IV--TMAKGIAN-GFPMGAVVTT--T-EI----AQVLTKA---A-----------------------HFNTFGGNPVGCV  163 (195)
Q Consensus       120 i~--~~sK~l~~-G~~~g~v~~~--~-~i----~~~l~~~---~-----------------------~~~t~~~~p~~~~  163 (195)
                      ++  +++|.+++ |.++|++++.  + ++    .+.+...   .                       .......+|+.++
T Consensus       199 i~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~  278 (421)
T 2ctz_A          199 LVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAW  278 (421)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHH
T ss_pred             EEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            77  66899994 7777776664  1 11    1222211   0                       0112356788888


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        164 IASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       164 aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++..++.+.  ...++..++.+++.+.|++
T Consensus       279 ~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~  307 (421)
T 2ctz_A          279 VVLLGMETLS--LRAERHVENTLHLAHWLLE  307 (421)
T ss_dssp             HHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCcchHH--HHHHHHHHhHHHHHHHHHh
Confidence            8888887653  2345555677777777754

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.39  E-value=2.8e-12  Score=108.95  Aligned_cols=139  Identities=19%  Similarity=0.106  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAE-SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivE-pv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~  117 (195)
                      +++|++.+.+.    ++++|+++ |.+   |....    +++|+++|++||++||+||+|. |+.+.|. +.+..  . .
T Consensus       161 ~~~l~~~i~~~----~~~~v~~~~~~~---~~~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~-~~~~~--~-~  225 (425)
T 3ecd_A          161 YDQVEALAQQH----KPSLIIAGFSAY---PRKLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGR-HANPV--E-H  225 (425)
T ss_dssp             HHHHHHHHHHH----CCSEEEEECSCC---CSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SCCGG--G-T
T ss_pred             HHHHHHHHhhc----CCcEEEEccccC---CCcCC----HHHHHHHHHHcCCEEEEECcChHhhhhccc-ccCch--h-c
Confidence            68888888754    34578887 444   33333    8999999999999999999974 4544554 22221  1 1


Q ss_pred             cchh--hhccccCCCCceEEEEec-HHHHHHhhcccccc-CCCchHHHHHHHHHHHHh-hcc--hhHHHHHHHHHHHHHH
Q psy13322        118 PDIV--TMAKGIANGFPMGAVVTT-TEIAQVLTKAAHFN-TFGGNPVGCVIASTVLDV-IKD--EELQYNCKQVSAQIIG  190 (195)
Q Consensus       118 pdi~--~~sK~l~~G~~~g~v~~~-~~i~~~l~~~~~~~-t~~~~p~~~~aa~aal~~-~~~--~~~~~~l~~~~~~l~~  190 (195)
                      +|++  ++||++ +|+++|+++++ +++.+.+....... +.+.++..++++.+++.. .++  +++.+++++++++|.+
T Consensus       226 ~di~~~s~sK~l-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  304 (425)
T 3ecd_A          226 AHVVTSTTHKTL-RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGD  304 (425)
T ss_dssp             CSEEEEESSGGG-CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEecCCccc-CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4665  556999 45678999998 56777665543222 223344444444445443 333  4788899999999999


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       305 ~L~~  308 (425)
T 3ecd_A          305 VLKA  308 (425)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8864

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.38  E-value=1.3e-12  Score=114.11  Aligned_cols=141  Identities=18%  Similarity=0.090  Sum_probs=100.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     +++++|+++.. +..|.+.   +.+++|.++|++||+++|+||+|... ..|. . ....+  .+|
T Consensus       193 ~~~L~~~i~-----~~t~~v~~~~p-n~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g~-~-~~~~~--g~d  258 (474)
T 1wyu_B          193 LEALKRELG-----PHVAALMLTNP-NTLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMGW-A-RPGDM--GFD  258 (474)
T ss_dssp             HHHHHHHCS-----TTEEEEEECSS-CTTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTTT-C-CHHHH--TCS
T ss_pred             HHHHHHhhC-----CCceEEEEECC-CCCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hccC-C-CcccC--CCc
Confidence            677887775     36889999984 5678763   23999999999999999999999732 3442 1 12222  367


Q ss_pred             hhhh--ccccCC-----CCceEEEEecHHHHHHhhccc-------------------cccCCCchHHHHHHHHHHHHhhc
Q psy13322        120 IVTM--AKGIAN-----GFPMGAVVTTTEIAQVLTKAA-------------------HFNTFGGNPVGCVIASTVLDVIK  173 (195)
Q Consensus       120 i~~~--sK~l~~-----G~~~g~v~~~~~i~~~l~~~~-------------------~~~t~~~~p~~~~aa~aal~~~~  173 (195)
                      ++++  +|+|++     |.++|++++++++++.+....                   ...+++++++++++++++++.+.
T Consensus       259 i~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g  338 (474)
T 1wyu_B          259 VVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG  338 (474)
T ss_dssp             EEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH
Confidence            7766  799962     358999999998877664100                   11234568888998998888653


Q ss_pred             ch---hHHHHHHHHHHHHHHHhhc
Q psy13322        174 DE---ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       174 ~~---~~~~~l~~~~~~l~~~L~~  194 (195)
                      .+   ++.+++.+++++|.+.|++
T Consensus       339 ~~~l~~~~~~~~~~~~~l~~~L~~  362 (474)
T 1wyu_B          339 LEGLKKAAALAVLNARYLKELLKE  362 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33   4478889999999998875

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.37  E-value=3e-12  Score=111.08  Aligned_cols=143  Identities=9%  Similarity=0.035  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.|+++.  +++++|+++.+++.+|.+.+    +++|.++|++||+++|+|++|+ .|...   .....+  ..|
T Consensus       201 ~~~l~~~i~~~~--~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~~---~~~~~~--~~D  268 (465)
T 3e9k_A          201 IEDILEVIEKEG--DSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNVE---LYLHDW--GVD  268 (465)
T ss_dssp             HHHHHHHHHHHG--GGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHH--TCC
T ss_pred             HHHHHHHHHhcC--CCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCcC---Cchhhc--CCC
Confidence            688888888653  37899999999999999877    8999999999999999999998 33221   122222  345


Q ss_pred             hh--hhccccCCC-CceEEEEecHHHHHHhhccccc---c------------C----------CCchHHHHHHHHHHHHh
Q psy13322        120 IV--TMAKGIANG-FPMGAVVTTTEIAQVLTKAAHF---N------------T----------FGGNPVGCVIASTVLDV  171 (195)
Q Consensus       120 i~--~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~---~------------t----------~~~~p~~~~aa~aal~~  171 (195)
                      ++  +++|.+++| .++|++.+++++.+.+.....+   .            +          .+.+++++++..++++.
T Consensus       269 ~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~  348 (465)
T 3e9k_A          269 FACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEI  348 (465)
T ss_dssp             EEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred             EEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHH
Confidence            55  456999644 4578899988876655432110   0            0          14577888888899988


Q ss_pred             hcc---hhHHHHHHHHHHHHHHHhhc
Q psy13322        172 IKD---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       172 ~~~---~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.+   ++++++++++.+++.+.|++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~l~~~L~~  374 (465)
T 3e9k_A          349 FKQATMKALRKKSVLLTGYLEYLIKH  374 (465)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence            754   67888999999999988864

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.37  E-value=4.3e-12  Score=110.11  Aligned_cols=143  Identities=9%  Similarity=0.032  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCccccCCCcccccccCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKS--NNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~--~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      +++|++.+.     .++++|++|+ .++.+| ...+.+.+++|+++|++  ||+++|+||+|+.+.+.+. .  . .++.
T Consensus       155 ~e~l~~~l~-----~~tk~V~i~~sp~np~~-~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~-~--~-~~g~  224 (431)
T 3ht4_A          155 FEAVAAAIH-----SNTKMIGIQRSKGYATR-PSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQE-P--C-HVGA  224 (431)
T ss_dssp             HHHHHHHCC-----TTEEEEEEECSCTTSSS-CCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCC-G--G-GTTC
T ss_pred             HHHHHhhcC-----CCCeEEEEECCCCCCCC-CcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCC-c--c-ccCC
Confidence            677777765     3788999996 332333 34466779999999999  9999999999997654333 2  1 2244


Q ss_pred             CcchhhhccccCCC--CceEEEEecHHHHHHhhccc----cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q psy13322        117 SPDIVTMAKGIANG--FPMGAVVTTTEIAQVLTKAA----HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIG  190 (195)
Q Consensus       117 ~pdi~~~sK~l~~G--~~~g~v~~~~~i~~~l~~~~----~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~  190 (195)
                      ...+.+++|.+++|  .++|++++++++++.+....    .+.+.+.++..+.+++..++.+  +...++..++..++.+
T Consensus       225 Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~  302 (431)
T 3ht4_A          225 DLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAA  302 (431)
T ss_dssp             SEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred             eEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHH
Confidence            33344678999864  56799999999988886522    2222333222234445555543  4466778888888888


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       303 ~L~~  306 (431)
T 3ht4_A          303 FLEK  306 (431)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.36  E-value=1.3e-12  Score=110.86  Aligned_cols=114  Identities=11%  Similarity=0.022  Sum_probs=83.0

Q ss_pred             CCeEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh--hhccccCCC
Q psy13322         54 TGAAA-LIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV--TMAKGIANG  130 (195)
Q Consensus        54 ~~~aa-vivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~--~~sK~l~~G  130 (195)
                      +++++ |+++++.+.+|.   +...+++|.++|++||+++|+||+|..+ ..|...... .....+|++  ++||+++ |
T Consensus       139 ~~~~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~-~~~~~~di~~~S~sK~l~-g  212 (374)
T 2aeu_A          139 DKDTLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPP-ALKLGADLVVTSTDKLME-G  212 (374)
T ss_dssp             CTTEEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCC-HHHHTCSEEEEETTSSSS-S
T ss_pred             CCccEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCC-ccccCCcEEEecCccccc-C
Confidence            36788 999999888885   5567999999999999999999998743 211100000 111235666  5789987 4


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK  173 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~  173 (195)
                      +++|++++++++++.+.........+.++++++++.++|+.+.
T Consensus       213 ~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~  255 (374)
T 2aeu_A          213 PRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFN  255 (374)
T ss_dssp             CSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC
T ss_pred             cceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHh
Confidence            7899999999998887764433334568899999999998764

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.36  E-value=6.6e-12  Score=107.69  Aligned_cols=135  Identities=11%  Similarity=0.086  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC-CEEEEeccccCccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN-GLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~-~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++.|++.++     .++++|++|++.+++|.+.+    +++|.++|++|| +++|+||+|+++. .+. .  .   +...
T Consensus       141 ~~~l~~~i~-----~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~-~~~-~--~---~~~~  204 (403)
T 3cog_A          141 IKLLEAAIT-----PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPY-FQR-P--L---ALGA  204 (403)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTT-TCC-T--T---TTTC
T ss_pred             HHHHHHhcC-----cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCcccc-cCC-c--c---ccCC
Confidence            566776664     37889999999999998886    999999999999 9999999998542 222 1  1   2346


Q ss_pred             chh--hhccccCC-C-CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322        119 DIV--TMAKGIAN-G-FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 di~--~~sK~l~~-G-~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L  192 (195)
                      |++  +++|.+++ | .++|+++++ +++++.+.......+...+|+.+.+++.+++.+..  ..++..++...+.+.|
T Consensus       205 div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~--r~~~~~~n~~~l~~~l  281 (403)
T 3cog_A          205 DISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHV--RMEKHFKNGMAVAQFL  281 (403)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHH
T ss_pred             eEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHH
Confidence            766  66899983 4 578999985 78888776544444556688998888888876532  2344444444444443

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.36  E-value=1.2e-11  Score=102.30  Aligned_cols=130  Identities=18%  Similarity=0.094  Sum_probs=94.9

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--CCEEEEeccccCccccCCCcccccccCCCcchhhh--ccccCCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--NGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM--AKGIANG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~--sK~l~~G  130 (195)
                      ++++|+++.+++++|.+.+    +++|.++|++|  |+++|+||+|+ +|...   +....+  .+|++++  +|+++++
T Consensus       121 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~~d~~~~s~~K~~~~~  190 (352)
T 1iug_A          121 GYAGLLLVHSETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVGE---VALEAM--GVDAAASGSQKGLMCP  190 (352)
T ss_dssp             SCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTBC---CCSGGG--TCSEEEEESSSTTCCC
T ss_pred             CCcEEEEEEecCCcceecC----HHHHHHHHHhhCCCCEEEEECCcc-ccCcc---eecccc--CeeEEEecCcccccCC
Confidence            4568999999999998876    89999999999  99999999997 54321   122222  3566654  6988754


Q ss_pred             CceEEEEecHHHHHHh---------h----cc-ccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVL---------T----KA-AHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l---------~----~~-~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ..+|++++++++++.+         .    .. .....++.++.+++++.++++.+++  +++.++++++++++.+.|++
T Consensus       191 ~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~  270 (352)
T 1iug_A          191 PGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE  270 (352)
T ss_dssp             SCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999876541         1    11 1222345678888888899987654  47788899999999998875

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.35  E-value=8e-12  Score=106.18  Aligned_cols=139  Identities=15%  Similarity=0.118  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.+++..  +++++|++++.   .|...+    +++|.++|++||+++|+||+|+ |+.+.|..   ...++ ..
T Consensus       109 ~~~l~~~i~~~~--~~~~~v~~~~~---~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~---~~~~~-~~  175 (394)
T 1o69_A          109 VDLLKLAIKECE--KKPKALILTHL---YGNAAK----MDEIVEICKENDIVLIEDAAEALGSFYKNKA---LGTFG-EF  175 (394)
T ss_dssp             HHHHHHHHHHCS--SCCCEEEEECG---GGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTSSS-SE
T ss_pred             HHHHHHHHhccc--CCceEEEEECC---CCChhh----HHHHHHHHHHcCCEEEEECcCcccceeCCcc---ccccc-Cc
Confidence            678888887542  25678888874   454444    9999999999999999999999 66555531   11111 36


Q ss_pred             chhhhc--cccCCCCceEEEEec-HHHHHHhhccc-cc-------------cCCCchHHHHHHHHHHHHhhcchhHHHHH
Q psy13322        119 DIVTMA--KGIANGFPMGAVVTT-TEIAQVLTKAA-HF-------------NTFGGNPVGCVIASTVLDVIKDEELQYNC  181 (195)
Q Consensus       119 di~~~s--K~l~~G~~~g~v~~~-~~i~~~l~~~~-~~-------------~t~~~~p~~~~aa~aal~~~~~~~~~~~l  181 (195)
                      |+.++|  |.++ |.++|+++++ +++++.+.... ..             ..++.+++.++++++.++.++  +..+++
T Consensus       176 ~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~  252 (394)
T 1o69_A          176 GVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKK  252 (394)
T ss_dssp             EEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHH
T ss_pred             EEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHH--HHHHHH
Confidence            778884  7665 4579999995 78877765431 11             111246677777776666553  367889


Q ss_pred             HHHHHHHHHHhhc
Q psy13322        182 KQVSAQIIGYLRV  194 (195)
Q Consensus       182 ~~~~~~l~~~L~~  194 (195)
                      +++++++.+.|++
T Consensus       253 ~~~~~~l~~~L~~  265 (394)
T 1o69_A          253 REIYEWYKEFLGE  265 (394)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999999875

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.35  E-value=1.9e-12  Score=107.33  Aligned_cols=147  Identities=9%  Similarity=0.003  Sum_probs=92.7

Q ss_pred             HHHHHHHHHhcC--CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc--cccCCCcccccccC
Q psy13322         40 YEQLVNAFQYNV--PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF--GRTGDNYWGFEMHG  115 (195)
Q Consensus        40 ~~~l~~~l~~~~--~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~--gr~G~~~~~~~~~~  115 (195)
                      +++|++.+++..  ...++++|+++++ +++|.+. +.+++++|+++|++||+++|+||+|.++  |..+. .  ....+
T Consensus       128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~--~~~~~  202 (359)
T 1svv_A          128 VADIESALHENRSEHMVIPKLVYISNT-TEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPVN-D--LTLAD  202 (359)
T ss_dssp             HHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC-C--CCHHH
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEEcC-CCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc-c--hhhhh
Confidence            678888887541  1125889999987 6778654 5799999999999999999999999655  44332 1  11111


Q ss_pred             --CCcchhhh--ccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322        116 --VSPDIVTM--AKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII  189 (195)
Q Consensus       116 --~~pdi~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~  189 (195)
                        ..+|++++  +|. ++....|++++++++++.+....  ...+++.++...++..++++...-+++.+++++++++|.
T Consensus       203 ~~~~~d~~~~s~~K~-g~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  281 (359)
T 1svv_A          203 IARLTDMFYIGATKA-GGMFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILK  281 (359)
T ss_dssp             HHHHCSEEEEECTTT-TCSSCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCEEEEecccC-CCCCceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence              23566554  474 32234688888888766555431  233333232233333333432111467788999999999


Q ss_pred             HHh
Q psy13322        190 GYL  192 (195)
Q Consensus       190 ~~L  192 (195)
                      +.|
T Consensus       282 ~~L  284 (359)
T 1svv_A          282 AGL  284 (359)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            887

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.33  E-value=6.9e-12  Score=106.65  Aligned_cols=134  Identities=17%  Similarity=0.125  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc-cccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF-GRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~-gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.++     .++++|+++.   .+|.+.+    +++|.++|++||+++|+||+|+.+ ...|.      .++..+
T Consensus       141 ~~~l~~~i~-----~~~~~v~~~n---~tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~------~~~~~~  202 (399)
T 2oga_A          141 PLLVEKAIT-----PRTRALLPVH---LYGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGR------RIGAGS  202 (399)
T ss_dssp             HHHHHHHCC-----TTEEEECCBC---GGGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTE------ETTCTT
T ss_pred             HHHHHHhcC-----CCCeEEEEeC---CcCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCe------eccccc
Confidence            577777665     2577777654   4566655    999999999999999999999732 12222      123335


Q ss_pred             chhhhc----cccCC-CCceEEEEec-HHHHHHhhccc-c-----------ccCCCchHHHHHHHHHHHHhhcchhHHHH
Q psy13322        119 DIVTMA----KGIAN-GFPMGAVVTT-TEIAQVLTKAA-H-----------FNTFGGNPVGCVIASTVLDVIKDEELQYN  180 (195)
Q Consensus       119 di~~~s----K~l~~-G~~~g~v~~~-~~i~~~l~~~~-~-----------~~t~~~~p~~~~aa~aal~~~~~~~~~~~  180 (195)
                      |++++|    |.+++ | ++|+++++ +++++.+.... .           +.++..++++++++.++++.++  ++.++
T Consensus       203 di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~  279 (399)
T 2oga_A          203 SVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGR  279 (399)
T ss_dssp             CEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHH
T ss_pred             CEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHH
Confidence            888774    99996 8 89999986 78877664421 1           1234568899999988888764  35677


Q ss_pred             HHHHHHHHHHHhhc
Q psy13322        181 CKQVSAQIIGYLRV  194 (195)
Q Consensus       181 l~~~~~~l~~~L~~  194 (195)
                      .+++.+++.+.|++
T Consensus       280 ~~~~~~~l~~~L~~  293 (399)
T 2oga_A          280 RSALAAEYLSGLAG  293 (399)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhcc
Confidence            77888888888865

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.33  E-value=1.1e-11  Score=107.22  Aligned_cols=152  Identities=9%  Similarity=0.075  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc--cc-cCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF--EM-HGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~--~~-~~~  116 (195)
                      .+.+.+.++...  .+...++..+..+.+|. .++.+.+++|.++|++|++++|+||+|.+|.+.+....++  .. .+.
T Consensus       177 ~~~~~~~l~~~~--~~~~vll~~~p~NPtG~-~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~  253 (420)
T 4h51_A          177 FEGMKKDILAAP--DGSVFILHQCAHNPTGV-DPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARR  253 (420)
T ss_dssp             HHHHHHHHHHSC--SSCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred             HHHHHHHHhccC--CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhh
Confidence            456666666553  35667777888888995 6788999999999999999999999999996543211111  11 112


Q ss_pred             Ccch---hhhccccC-CCCceEEEEecHHHHHHh-------hccccccCCCchHHHHHHHHHHHHhh------c--chhH
Q psy13322        117 SPDI---VTMAKGIA-NGFPMGAVVTTTEIAQVL-------TKAAHFNTFGGNPVGCVIASTVLDVI------K--DEEL  177 (195)
Q Consensus       117 ~pdi---~~~sK~l~-~G~~~g~v~~~~~i~~~l-------~~~~~~~t~~~~p~~~~aa~aal~~~------~--~~~~  177 (195)
                      .+.+   .+|||.++ .|||+|++++..+..+..       .........+.+..++.++..++.--      +  -+.+
T Consensus       254 ~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m  333 (420)
T 4h51_A          254 GIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAM  333 (420)
T ss_dssp             TCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             CceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            2233   37799999 899999998754322221       11112333345566776666666421      1  1457


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      +++++++++.|.+.|++
T Consensus       334 ~~r~~~~R~~l~~~L~~  350 (420)
T 4h51_A          334 AERIRTMRRTVYDELLR  350 (420)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            78889999999998875

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.33  E-value=3.7e-12  Score=110.11  Aligned_cols=151  Identities=13%  Similarity=0.065  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC----------ccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG----------FGRTGDNYW  109 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g----------~gr~G~~~~  109 (195)
                      +++|++.|++... +++++|+++++++.+|..+++.++|++|+++|++||++||+|++|..          .++.|....
T Consensus       169 ~~~Le~~i~~~~~-~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~  247 (467)
T 2oqx_A          169 LEGLERGIEEVGP-NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIE  247 (467)
T ss_dssp             HHHHHHHHHHHCG-GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHH
T ss_pred             HHHHHHHHHhcCC-CceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHH
Confidence            6889999886421 26889999999988645788899999999999999999999977753          134443111


Q ss_pred             ccc--ccCCCcch--hhhccccCCCCc-eEEEEecHH-HHHH---hhcc---c-cccCCCchH-HHHHHHHHHHHhhcch
Q psy13322        110 GFE--MHGVSPDI--VTMAKGIANGFP-MGAVVTTTE-IAQV---LTKA---A-HFNTFGGNP-VGCVIASTVLDVIKDE  175 (195)
Q Consensus       110 ~~~--~~~~~pdi--~~~sK~l~~G~~-~g~v~~~~~-i~~~---l~~~---~-~~~t~~~~p-~~~~aa~aal~~~~~~  175 (195)
                      .+.  .+ ..+|+  .++||+++  .| .|+++++++ +++.   +...   . ...+++..+ .++++...+++...++
T Consensus       248 ~~~~~~~-~~~d~~~~s~sK~~g--~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~  324 (467)
T 2oqx_A          248 QITRETY-KYADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNL  324 (467)
T ss_dssp             HHHHHHG-GGCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHhhhhh-ccCCeEEEecccccC--CCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhH
Confidence            111  00 11343  45679886  23 366777765 3333   3221   1 112233322 2222222333332223


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      +..++.+++++++.+.|++
T Consensus       325 ~~~~~~~~~~~~l~~~L~~  343 (467)
T 2oqx_A          325 DWLAYRIAQVQYLVDGLEE  343 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4556678889999998875

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.32  E-value=4.9e-12  Score=112.77  Aligned_cols=98  Identities=11%  Similarity=0.169  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH--HHcCCEEEEeccccCccccCCCccccccc--C
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELI--KSNNGLFISDEVQTGFGRTGDNYWGFEMH--G  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~--~~~~~llI~DEv~~g~gr~G~~~~~~~~~--~  115 (195)
                      ++.|++.+.     .++++|++...++.+|. +.+.+.+++|.++|  ++||++||+||+|++|.....   ++...  +
T Consensus       235 ~~~l~~~~~-----~~~k~v~l~~p~NPtG~-~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~---s~~~~~~~  305 (546)
T 2zy4_A          235 DSELDKLKD-----PAIKIFFCVNPSNPPSV-KMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQ---SLFAICPE  305 (546)
T ss_dssp             HHHHGGGGS-----TTEEEEEEESSCSSSCB-CCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCC---CHHHHCGG
T ss_pred             HHHHHHhhC-----CCCeEEEEECCCCCCCc-cCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCc---CHHHhCCC
Confidence            455655432     36778888888888995 56778899999999  789999999999998864221   22111  1


Q ss_pred             CCcchhhhccccC-CCCceEEEEecHH-HHHHh
Q psy13322        116 VSPDIVTMAKGIA-NGFPMGAVVTTTE-IAQVL  146 (195)
Q Consensus       116 ~~pdi~~~sK~l~-~G~~~g~v~~~~~-i~~~l  146 (195)
                      ....+.+|||.+| .|||+|+++++++ +++.+
T Consensus       306 ~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l  338 (546)
T 2zy4_A          306 NTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLA  338 (546)
T ss_dssp             GEEEEEESTTTTTCGGGCEEEEEEESSCHHHHH
T ss_pred             CEEEEEeCccccCCCCcceEEEEECCHHHHHHH
Confidence            1112447799998 8999999999875 76665

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.31  E-value=3.8e-12  Score=106.99  Aligned_cols=134  Identities=19%  Similarity=0.121  Sum_probs=93.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.+.     +++++|+++..   .|...+    +++|.++|++||++||+||+|+ |..+.|+      ..+...
T Consensus       113 ~~~l~~~i~-----~~~~~v~~~~~---~G~~~~----~~~i~~la~~~~~~li~D~a~~~g~~~~~~------~~~~~~  174 (367)
T 3nyt_A          113 PQLLEAAIT-----PRTKAIIPVSL---YGQCAD----FDAINAIASKYGIPVIEDAAQSFGASYKGK------RSCNLS  174 (367)
T ss_dssp             GGGTGGGCC-----TTEEEECCBCG---GGCCCC----HHHHHHHHHHTTCCBEEECTTTTTCEETTE------ETTSSS
T ss_pred             HHHHHHhcC-----cCCcEEEeeCC---ccChhh----HHHHHHHHHHcCCEEEEECccccCCeECCe------eccCCC
Confidence            345555543     37888886554   454444    9999999999999999999997 3333332      112223


Q ss_pred             chhhhc----cccCC-CCceEEEEec-HHHHHHhhccc------------cccCCCchHHHHHHHHHHHHhhcchhHHHH
Q psy13322        119 DIVTMA----KGIAN-GFPMGAVVTT-TEIAQVLTKAA------------HFNTFGGNPVGCVIASTVLDVIKDEELQYN  180 (195)
Q Consensus       119 di~~~s----K~l~~-G~~~g~v~~~-~~i~~~l~~~~------------~~~t~~~~p~~~~aa~aal~~~~~~~~~~~  180 (195)
                      |++++|    |.+++ |. +|+++++ +++.+.+....            .++++..+++.++++++.++.+  +++.++
T Consensus       175 di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~  251 (367)
T 3nyt_A          175 TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIAL  251 (367)
T ss_dssp             SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHH
T ss_pred             CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHH
Confidence            888776    99996 76 7888874 67777665422            1346778899999999988866  346677


Q ss_pred             HHHHHHHHHHHhhc
Q psy13322        181 CKQVSAQIIGYLRV  194 (195)
Q Consensus       181 l~~~~~~l~~~L~~  194 (195)
                      .+++.+++.+.|++
T Consensus       252 ~~~~~~~~~~~L~~  265 (367)
T 3nyt_A          252 RQKVAAEYDLSLKQ  265 (367)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            78888888888865

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.31  E-value=5e-12  Score=108.15  Aligned_cols=138  Identities=17%  Similarity=0.141  Sum_probs=99.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC----------CEEEEeccccCccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN----------GLFISDEVQTGFGRTGDNYW  109 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~----------~llI~DEv~~g~gr~G~~~~  109 (195)
                      ++.|++.+.     .++++|+++++.+.+|.+.+    +++|.++|++||          +++|+||+|. +|...   .
T Consensus       165 ~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~~---~  231 (432)
T 3a9z_A          165 VEDILAAVR-----PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKRR---V  231 (432)
T ss_dssp             HHHHHHTCC-----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTSC---C
T ss_pred             HHHHHHhcc-----CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCcc---c
Confidence            566666554     36889999999999998887    789999999999          9999999996 54322   1


Q ss_pred             cccccCCCcchhhh--ccccCCCCceEEEEecHHH-HHHhhccc-------cccCCCchHHHHHHHHHHHHhhcc--hhH
Q psy13322        110 GFEMHGVSPDIVTM--AKGIANGFPMGAVVTTTEI-AQVLTKAA-------HFNTFGGNPVGCVIASTVLDVIKD--EEL  177 (195)
Q Consensus       110 ~~~~~~~~pdi~~~--sK~l~~G~~~g~v~~~~~i-~~~l~~~~-------~~~t~~~~p~~~~aa~aal~~~~~--~~~  177 (195)
                      ...  ...+|++++  +|.+|  +++|++++++++ ...+....       ...+++.++.+++++.++++.+++  +++
T Consensus       232 ~~~--~~~~d~~~~s~~K~~g--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~  307 (432)
T 3a9z_A          232 DVE--DLGVDFLTIVGHKFYG--PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETY  307 (432)
T ss_dssp             CHH--HHCCSEEEEEGGGTTC--CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Chh--hcCCCEEEEehhHhcC--CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHH
Confidence            222  124676544  89774  569999998765 22222211       112345678888888889987654  577


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      .+++++++++|.+.|++
T Consensus       308 ~~~~~~~~~~l~~~L~~  324 (432)
T 3a9z_A          308 EAHMRDIRDYLEERLEA  324 (432)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88899999999988864

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.28  E-value=1.2e-11  Score=104.31  Aligned_cols=133  Identities=20%  Similarity=0.194  Sum_probs=92.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.++     .++++|++.+.   .|...+    +++|.++|++||+++|+||+|+ |+.+.|. .     ++. +
T Consensus       117 ~~~l~~~l~-----~~~~~v~~~~~---~G~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~-----~~~-~  177 (393)
T 1mdo_A          117 PEHIEAAIT-----PQTKAIIPVHY---AGAPAD----LDAIYALGERYGIPVIEDAAHATGTSYKGR-H-----IGA-R  177 (393)
T ss_dssp             HHHHHHHCC-----TTEEEECCBCG---GGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTE-E-----TTS-S
T ss_pred             HHHHHHhcC-----CCceEEEEeCC---CCCcCC----HHHHHHHHHHcCCeEEEECccccCCeECCe-e-----cCC-C
Confidence            577777765     26778888764   455544    9999999999999999999998 4434332 1     222 7


Q ss_pred             chhhhc----cccCCCCceEEEEec-HHHHHHhhcccc-c--------------c-----C----CCchHHHHHHHHHHH
Q psy13322        119 DIVTMA----KGIANGFPMGAVVTT-TEIAQVLTKAAH-F--------------N-----T----FGGNPVGCVIASTVL  169 (195)
Q Consensus       119 di~~~s----K~l~~G~~~g~v~~~-~~i~~~l~~~~~-~--------------~-----t----~~~~p~~~~aa~aal  169 (195)
                      |++++|    |.+++| ++|+++++ +++++.+..... +              .     +    +..+++.++++++.+
T Consensus       178 d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l  256 (393)
T 1mdo_A          178 GTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL  256 (393)
T ss_dssp             SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH
Confidence            887766    888765 78999986 778776653211 1              0     1    234777777777777


Q ss_pred             HhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        170 DVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       170 ~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.+  ++..++.+++.+++.+.|++
T Consensus       257 ~~~--~~~~~~~~~~~~~l~~~L~~  279 (393)
T 1mdo_A          257 QKL--DALNARRAAIAAQYHQAMAD  279 (393)
T ss_dssp             HTH--HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHhc
Confidence            654  34667777888888888865

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.27  E-value=1.6e-11  Score=102.38  Aligned_cols=136  Identities=12%  Similarity=0.091  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|+++++++++|.+.+    +++|.++|++||+ +|+||+|+ +|..   .......+  .|
T Consensus       128 ~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~---~~~~~~~~--~d  191 (382)
T 4hvk_A          128 VSFIDQKLR-----DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI---EVDVEKIG--AD  191 (382)
T ss_dssp             HHHHHHHCC-----TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB---CCCHHHHT--CS
T ss_pred             HHHHHHHhc-----cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC---CCCchhcC--CC
Confidence            577777665     36789999999999998877    8999999999999 99999987 4322   11222223  45


Q ss_pred             hh--hhccccCCCCceEEEEecHHHHHHhhcccc-------ccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322        120 IV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAH-------FNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI  188 (195)
Q Consensus       120 i~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~-------~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l  188 (195)
                      ++  +++|.+|. ..+|+++++++.  .+.....       ......++.+++++.++++.+.+  +++.++++++++++
T Consensus       192 ~~~~s~~K~~g~-~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l  268 (382)
T 4hvk_A          192 MLTISSNDIYGP-KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRI  268 (382)
T ss_dssp             EEEEESGGGTSC-TTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeHHHhcCC-CceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            55  44697652 237888877654  2222211       11334477888888888886644  67888999999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|++
T Consensus       269 ~~~L~~  274 (382)
T 4hvk_A          269 IDNVLK  274 (382)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            998875

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.26  E-value=3.4e-12  Score=111.60  Aligned_cols=144  Identities=9%  Similarity=0.003  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc-----CCCc---ccc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT-----GDNY---WGF  111 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~-----G~~~---~~~  111 (195)
                      +++|++.+.     .++++|+++...+.+|.+.+    +++|+++|++||++||+||+|+|+.+.     |.+.   +.+
T Consensus       196 ~~~l~~~i~-----~~~~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~  266 (497)
T 3mc6_A          196 LGKVKKFIN-----KNTVLLVGSAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF  266 (497)
T ss_dssp             TTTTGGGCC-----SSEEEEEEETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCST
T ss_pred             HHHHHHHHh-----hCCEEEEEECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccc
Confidence            355555554     36889999999999998876    889999999999999999999976442     2111   112


Q ss_pred             cccCCCcchhhh--ccccCCCCceEEEEecHHHHHHhhccc----ccc-----CC--CchHHHHHHHHHHHHhhcc---h
Q psy13322        112 EMHGVSPDIVTM--AKGIANGFPMGAVVTTTEIAQVLTKAA----HFN-----TF--GGNPVGCVIASTVLDVIKD---E  175 (195)
Q Consensus       112 ~~~~~~pdi~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~----~~~-----t~--~~~p~~~~aa~aal~~~~~---~  175 (195)
                      ...|+  |++++  +|.+.+|.++|+++++++.........    ...     ++  +.+....++..++++.+..   +
T Consensus       267 ~~~g~--d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~  344 (497)
T 3mc6_A          267 RVPGV--TSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYI  344 (497)
T ss_dssp             TSTTC--CEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCC--cEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHH
Confidence            22333  55544  598877888999999876554332111    011     11  1122334444555555433   4


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++.+++.++.+++.+.|++
T Consensus       345 ~~~~~~~~~~~~l~~~L~~  363 (497)
T 3mc6_A          345 ESCQEIVGAAMKFKKYIQE  363 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            5677888899999998875

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.26  E-value=4.8e-11  Score=105.20  Aligned_cols=150  Identities=11%  Similarity=-0.016  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-C
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-S  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~  117 (195)
                      +++|++.|++.... .++++|++....+..|.+.+    +++|.++|++||+++++|++|+++..... .+.....++ .
T Consensus       243 ~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~g~~l~vD~a~~~~~~~~~-~~~~~~~g~~~  317 (515)
T 2jis_A          243 PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRHGLWLHVDAAWGGSVLLSQ-THRHLLDGIQR  317 (515)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGGGGTTGGG
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHcCCeEEEehhhhhHHHhCh-hhHhhcCCCcc
Confidence            67888888653111 25889999988888998876    99999999999999999999997765543 122222355 6


Q ss_pred             cchhhh--ccccCCCCceEEEEecHH--HHHHhhc----cccc-----------cCC------CchHHHHHHHHHHHHhh
Q psy13322        118 PDIVTM--AKGIANGFPMGAVVTTTE--IAQVLTK----AAHF-----------NTF------GGNPVGCVIASTVLDVI  172 (195)
Q Consensus       118 pdi~~~--sK~l~~G~~~g~v~~~~~--i~~~l~~----~~~~-----------~t~------~~~p~~~~aa~aal~~~  172 (195)
                      +|++++  +|.+++++.+|+++++++  +++....    ....           .++      ....+.+.++++++...
T Consensus       318 aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~  397 (515)
T 2jis_A          318 ADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQ  397 (515)
T ss_dssp             CSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHH
Confidence            788877  699986677899998876  6553211    0000           000      11245555555555422


Q ss_pred             cchhHHHHHHHHHHHHHHHhhc
Q psy13322        173 KDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       173 ~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .-+++.++..+++++|.+.|++
T Consensus       398 g~~~~~~~~~~~a~~l~~~L~~  419 (515)
T 2jis_A          398 GLERRIDQAFVLARYLVEEMKK  419 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            2256778888999999998875

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.26  E-value=1.2e-11  Score=104.29  Aligned_cols=137  Identities=12%  Similarity=0.126  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ ++..     ....... +|
T Consensus       149 ~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~-----~~~~~~~-~d  212 (400)
T 3vax_A          149 VEGVMERLR-----PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKV-----PGDLTTP-ID  212 (400)
T ss_dssp             HHHHHTTCC-----TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTS-----GGGGGSC-CS
T ss_pred             HHHHHHhcC-----CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCC-----CcChhhc-Cc
Confidence            466666554     36889999999999998877    8999999999999999999998 3322     1211233 78


Q ss_pred             hhhh--ccccCCCCceEEEE-ecH-HHH---HHhhccc-------cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHH
Q psy13322        120 IVTM--AKGIANGFPMGAVV-TTT-EIA---QVLTKAA-------HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQ  183 (195)
Q Consensus       120 i~~~--sK~l~~G~~~g~v~-~~~-~i~---~~l~~~~-------~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~  183 (195)
                      ++++  +|.+| ...+|+++ +++ ++.   ..+....       .....+.++.+++++.++++.+.+  +++.+++++
T Consensus       213 ~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~  291 (400)
T 3vax_A          213 MISISGHKIGA-PKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQD  291 (400)
T ss_dssp             EEEEETGGGTS-CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             EEEEeHHHhCC-CCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            7765  49554 22367777 765 111   1122111       112334577888888888887654  678889999


Q ss_pred             HHHHHHHHhh
Q psy13322        184 VSAQIIGYLR  193 (195)
Q Consensus       184 ~~~~l~~~L~  193 (195)
                      +++++.+.|+
T Consensus       292 ~~~~l~~~L~  301 (400)
T 3vax_A          292 LRSRLLAGLA  301 (400)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhC
Confidence            9999998885

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.26  E-value=2.3e-11  Score=101.43  Aligned_cols=132  Identities=12%  Similarity=-0.055  Sum_probs=85.5

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--ccccCCCcccccccCCCcc--hhhhccccCCCC
Q psy13322         56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG--FGRTGDNYWGFEMHGVSPD--IVTMAKGIANGF  131 (195)
Q Consensus        56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g--~gr~G~~~~~~~~~~~~pd--i~~~sK~l~~G~  131 (195)
                      +++|++++..+.+|-.+++.++|++|.++|++||++||+||+|..  .+..|.....+.   ...|  +.++||++++. 
T Consensus       136 ~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~-  211 (357)
T 3lws_A          136 IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYISFYKGLGGI-  211 (357)
T ss_dssp             CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEEESSSTTCCS-
T ss_pred             cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEEeccccCCCC-
Confidence            678999999887644678899999999999999999999999861  122232111111   1224  34789999531 


Q ss_pred             ceEEEEecHHHHHHhhccc--ccc-CCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        132 PMGAVVTTTEIAQVLTKAA--HFN-TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       132 ~~g~v~~~~~i~~~l~~~~--~~~-t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ..|++++++++++.+....  ... .+..++.+ +++.++|+...  +..++..++++++.+.|++
T Consensus       212 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~  274 (357)
T 3lws_A          212 AGAILAGPAAFCQTARIWKRRYGGDLISLYPYI-VSADYYYELRK--DRMGQYYEQAKQLAEQFNA  274 (357)
T ss_dssp             SCEEEEECHHHHHHHHHHHHHTTCCCSCCHHHH-HHHHHHHHHHT--TCHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEcCHHHHHHHHHHHHHhcCCcccchHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence            2389999999888776432  222 23334443 44556776532  2234457778888888865

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.25  E-value=3.4e-11  Score=103.16  Aligned_cols=134  Identities=17%  Similarity=0.144  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.+.     .++++|++..   .+|....    +++|.++|++||++||+||+|+ |+.+.|. .  .   +..+
T Consensus       128 ~~~l~~~i~-----~~~~~v~~~~---~tG~~~~----l~~i~~la~~~~~~li~Dea~~~g~~~~~~-~--~---~~~~  189 (424)
T 2po3_A          128 PDQVAAAVT-----PRTSAVVGVH---LWGRPCA----ADQLRKVADEHGLRLYFDAAHALGCAVDGR-P--A---GSLG  189 (424)
T ss_dssp             HHHHGGGCC-----TTEEEEEEEC---GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTE-E--T---TSSS
T ss_pred             HHHHHHhhC-----cCCcEEEEEC---CCCCcCC----HHHHHHHHHHcCCEEEEECccccCCeECCe-e--c---cccc
Confidence            466666554     2567777644   3565444    9999999999999999999999 7765553 1  1   2224


Q ss_pred             chhhhc----cccCCCCceEEEEec-HHHHHHhhcccc-c-----------cCCCchHHHHHHHHHHHHhhcchhHHHHH
Q psy13322        119 DIVTMA----KGIANGFPMGAVVTT-TEIAQVLTKAAH-F-----------NTFGGNPVGCVIASTVLDVIKDEELQYNC  181 (195)
Q Consensus       119 di~~~s----K~l~~G~~~g~v~~~-~~i~~~l~~~~~-~-----------~t~~~~p~~~~aa~aal~~~~~~~~~~~l  181 (195)
                      |++++|    |++++ +++|+++++ +++++.+..... .           .++..+++++++++..++.+  ++..++.
T Consensus       190 di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~  266 (424)
T 2po3_A          190 DAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRN  266 (424)
T ss_dssp             SEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHH
T ss_pred             CEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHH
Confidence            666554    76665 789999999 788776654211 0           11233567666666655543  3467778


Q ss_pred             HHHHHHHHHHhhc
Q psy13322        182 KQVSAQIIGYLRV  194 (195)
Q Consensus       182 ~~~~~~l~~~L~~  194 (195)
                      +++.+++.+.|++
T Consensus       267 ~~~~~~l~~~L~~  279 (424)
T 2po3_A          267 RRNHAAYREHLAD  279 (424)
T ss_dssp             HHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHhcc
Confidence            8888888888864

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.25  E-value=2.2e-11  Score=102.76  Aligned_cols=136  Identities=12%  Similarity=0.038  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.+.     .++++|+  | .+..|.+.+    +++|.++|++||++||+||+|+ |..+.|.   ....++ ..
T Consensus       116 ~~~l~~~i~-----~~~~~v~--~-~n~tG~~~~----l~~i~~la~~~~~~li~D~a~~~g~~~~~~---~~~~~~-~i  179 (388)
T 1b9h_A          116 PEAVAAAVT-----PRTKVIM--P-VHMAGLMAD----MDALAKISADTGVPLLQDAAHAHGARWQGK---RVGELD-SI  179 (388)
T ss_dssp             HHHHHHHCC-----TTEEEEC--C-BCGGGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTE---EGGGSS-SC
T ss_pred             HHHHHHhcC-----cCceEEE--E-eCCccCcCC----HHHHHHHHHHcCCEEEEecchhcCCccCCe---eccccc-ce
Confidence            577777764     2566666  3 455787765    8999999999999999999998 3433332   122223 12


Q ss_pred             chhhhc--cccCCCCceEEEEecHH-H--HHHhhccc-c--------------ccCCCchHHHHHHHHHHHHhhcchhHH
Q psy13322        119 DIVTMA--KGIANGFPMGAVVTTTE-I--AQVLTKAA-H--------------FNTFGGNPVGCVIASTVLDVIKDEELQ  178 (195)
Q Consensus       119 di~~~s--K~l~~G~~~g~v~~~~~-i--~~~l~~~~-~--------------~~t~~~~p~~~~aa~aal~~~~~~~~~  178 (195)
                      ++.+||  |++++ .++|+++++++ +  ++.+.... +              +.++..+++.++++.+.++.++  +..
T Consensus       180 ~~~S~s~~K~l~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~  256 (388)
T 1b9h_A          180 ATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQI  256 (388)
T ss_dssp             EEEECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHH
T ss_pred             EEEEccCCCcccC-CCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHH--HHH
Confidence            344555  66655 47899998875 6  55543211 1              1222356777777666666553  467


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++.+++++++.+.|++
T Consensus       257 ~~~~~~~~~l~~~L~~  272 (388)
T 1b9h_A          257 AVRDERWTLLSRLLGA  272 (388)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            7788889999988875

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.24  E-value=5.5e-11  Score=98.58  Aligned_cols=147  Identities=15%  Similarity=0.122  Sum_probs=93.3

Q ss_pred             HHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc---ccCCCcccccccC
Q psy13322         40 YEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG---RTGDNYWGFEMHG  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g---r~G~~~~~~~~~~  115 (195)
                      +++|++.+++... ..++++|+++++++++|-.+.+.+.+++|.++|++||+++|+||+|. ++   ..|.   ......
T Consensus       116 ~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~---~~~~~~  191 (347)
T 1jg8_A          116 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGV---PVKEYA  191 (347)
T ss_dssp             HHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCC---CHHHHH
T ss_pred             HHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCC---ChHHhc
Confidence            6788887764210 02688999999999983356678889999999999999999999985 32   2232   111111


Q ss_pred             CCcc--hhhhccccCCCCceE-EEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q psy13322        116 VSPD--IVTMAKGIANGFPMG-AVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIG  190 (195)
Q Consensus       116 ~~pd--i~~~sK~l~~G~~~g-~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~  190 (195)
                      ...|  ++++||+++++  +| ++++++++++.+....  .+.+...+++.++++.++|+...+ .+ ++..++++++.+
T Consensus       192 ~~~d~~~~s~sK~l~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~l~~  267 (347)
T 1jg8_A          192 GYADSVMFCLSKGLCAP--VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVD-RL-KEDHENARFLAL  267 (347)
T ss_dssp             HTCSEEEEESSSTTCCS--SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSST-TH-HHHHHHHHHHHH
T ss_pred             ccccEEEEecccccCCC--ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHH
Confidence            1123  34679999743  45 5667888777654321  333344466777777778875422 22 333456677777


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|++
T Consensus       268 ~L~~  271 (347)
T 1jg8_A          268 KLKE  271 (347)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7754

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.23  E-value=1.3e-10  Score=102.08  Aligned_cols=150  Identities=11%  Similarity=0.012  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-C
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-S  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~  117 (195)
                      ++.|++.|++...+ .++++|++....+..|.+.+    +++|.++|++||+++++|++|+++......+ .....++ .
T Consensus       229 ~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~-~~~~~g~~~  303 (504)
T 2okj_A          229 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKH-RHKLNGIER  303 (504)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTT-GGGGTTGGG
T ss_pred             HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEehhhhhHHHhCHhh-HhhcCCccc
Confidence            67888888653111 25788999888888898766    9999999999999999999999765443211 1122244 5


Q ss_pred             cchhhhc--cccCCCCceEEEEecH-HHHHHhh-ccc-cc---cC----------------CCchHHHHHHHHHHHHhhc
Q psy13322        118 PDIVTMA--KGIANGFPMGAVVTTT-EIAQVLT-KAA-HF---NT----------------FGGNPVGCVIASTVLDVIK  173 (195)
Q Consensus       118 pdi~~~s--K~l~~G~~~g~v~~~~-~i~~~l~-~~~-~~---~t----------------~~~~p~~~~aa~aal~~~~  173 (195)
                      +|+++++  |.+++.+++|++++++ ++++... ... +.   .+                ...+++.+.++++++..-.
T Consensus       304 ~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g  383 (504)
T 2okj_A          304 ANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVG  383 (504)
T ss_dssp             CSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHH
Confidence            7888775  9988667899999986 4655322 111 10   00                0113666666666665322


Q ss_pred             chhHHHHHHHHHHHHHHHhhc
Q psy13322        174 DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       174 ~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      -+++.++..+++++|.+.|++
T Consensus       384 ~~~~~~~~~~~a~~l~~~L~~  404 (504)
T 2okj_A          384 FENQINKCLELAEYLYAKIKN  404 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            255778888999999998875

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.23  E-value=3e-11  Score=101.50  Aligned_cols=135  Identities=16%  Similarity=0.151  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|+   +.++.|...+    +++|.++|++||+++|+||+|+ +|..    +.....+..+|
T Consensus       114 ~~~l~~~l~-----~~~~~v~---~~n~~G~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~----~~~~~~~~~~d  176 (373)
T 3frk_A          114 PSLIESAIT-----EKTKAII---AVHLYGQPAD----MDEIKRIAKKYNLKLIEDAAQA-HGSL----YKGMKVGSLGD  176 (373)
T ss_dssp             GGGTGGGCC-----TTEEEEE---EECCTTCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCE----ETTEETTSSSS
T ss_pred             HHHHHHhcC-----CCCeEEE---EECCCcCccc----HHHHHHHHHHcCCEEEEECCcc-cCCE----ECCEecccccc
Confidence            345555443     3677777   3446777665    9999999999999999999998 3211    11123344468


Q ss_pred             hhhhc----cccCC-CCceEEEEec-HHHHHHhhccc------------cccCCCchHHHHHHHHHHHHhhcchhHHHHH
Q psy13322        120 IVTMA----KGIAN-GFPMGAVVTT-TEIAQVLTKAA------------HFNTFGGNPVGCVIASTVLDVIKDEELQYNC  181 (195)
Q Consensus       120 i~~~s----K~l~~-G~~~g~v~~~-~~i~~~l~~~~------------~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l  181 (195)
                      ++++|    |++++ |. +|+++++ +++.+.+....            .+.++..+++.+++++..++.+  +++.++.
T Consensus       177 ~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~  253 (373)
T 3frk_A          177 AAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEER  253 (373)
T ss_dssp             EEEEECCTTSSSCCSSS-CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHH
T ss_pred             EEEEeCcCCCccCccce-eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHH
Confidence            88777    99986 54 7788876 45665554321            1234455777777777666654  4467888


Q ss_pred             HHHHHHHHHHhhc
Q psy13322        182 KQVSAQIIGYLRV  194 (195)
Q Consensus       182 ~~~~~~l~~~L~~  194 (195)
                      +++.+++.+.|++
T Consensus       254 ~~~~~~~~~~l~~  266 (373)
T 3frk_A          254 RKIAQKYIAGINN  266 (373)
T ss_dssp             HHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhcc
Confidence            8888888888865

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.21  E-value=2.9e-11  Score=101.06  Aligned_cols=134  Identities=14%  Similarity=0.125  Sum_probs=86.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|++...   +|.+.+    +++|.++|++||+++|+||+|+ +|.... .   ...+..+|
T Consensus       111 ~~~l~~~i~-----~~~~~v~~~~~---tG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~~-~---~~~~~~~~  173 (375)
T 2fnu_A          111 ELALEKLIN-----ERTKAIVSVDY---AGKSVE----VESVQKLCKKHSLSFLSDSSHA-LGSEYQ-N---KKVGGFAL  173 (375)
T ss_dssp             GGGSGGGCC-----TTEEEEEEECG---GGCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCEET-T---EETTSSSS
T ss_pred             HHHHHhhcC-----cCceEEEEeCC---cCCccC----HHHHHHHHHHcCCEEEEECccc-cCCeEC-C---eeccccCC
Confidence            355555443     25666655544   676665    8999999999999999999998 332211 1   11222234


Q ss_pred             --hhhhc--cccCCCCceEEEEe-c-HHHHHHhhccc----------------cccCCCchHHHHHHHHHHHHhhcchhH
Q psy13322        120 --IVTMA--KGIANGFPMGAVVT-T-TEIAQVLTKAA----------------HFNTFGGNPVGCVIASTVLDVIKDEEL  177 (195)
Q Consensus       120 --i~~~s--K~l~~G~~~g~v~~-~-~~i~~~l~~~~----------------~~~t~~~~p~~~~aa~aal~~~~~~~~  177 (195)
                        +.++|  |.++.|  +|++++ + +++++.+....                .+.+++.+++.+++++..++.+  ++.
T Consensus       174 i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~  249 (375)
T 2fnu_A          174 ASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFL  249 (375)
T ss_dssp             EEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHH
T ss_pred             eEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHH
Confidence              44777  999765  566666 3 66766664432                1122355677777666665544  457


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      .++.+++++++.+.|++
T Consensus       250 ~~~~~~~~~~l~~~L~~  266 (375)
T 2fnu_A          250 MQKREEAALTYDRIFKD  266 (375)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            78889999999998875

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.21  E-value=2.9e-11  Score=101.18  Aligned_cols=135  Identities=13%  Similarity=0.119  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|+++.+++++|.+.+    +++|.++|++||++ |+||+|+ +|...   .....+  .+|
T Consensus       128 ~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~---~~~~~~--~~d  191 (382)
T 4eb5_A          128 VSFIDQKLR-----DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE---VDVEKI--GAD  191 (382)
T ss_dssp             HHHHHHHCC-----TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC---CCHHHH--TCS
T ss_pred             HHHHHHHhc-----CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc---cCcccc--CCC
Confidence            567777665     25778999999999998876    89999999999999 9999998 54321   122222  356


Q ss_pred             hh--hhccccC-CCCceEEEEecHHHHHHhhccc-------cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH
Q psy13322        120 IV--TMAKGIA-NGFPMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQ  187 (195)
Q Consensus       120 i~--~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~-------~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~  187 (195)
                      ++  +++|.+| .|  +|+++++++.  .+....       .....+.++.+++++.++++.+.+  +++.+++++++++
T Consensus       192 i~~~s~sK~~g~~g--~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  267 (382)
T 4eb5_A          192 MLTISSNDIYGPKG--VGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDR  267 (382)
T ss_dssp             EEEEETGGGTCCSS--CEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeehHHhcCCCc--eEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            65  4469866 34  6888888763  122111       111234567777888888887644  5678889999999


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      +.+.|++
T Consensus       268 l~~~L~~  274 (382)
T 4eb5_A          268 IIDNVLK  274 (382)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9998875

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.21  E-value=1.4e-10  Score=100.01  Aligned_cols=138  Identities=9%  Similarity=0.043  Sum_probs=94.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcc----cCCCCCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCccccCCCcccccc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAES----IQGVSGVKEFPRYFLRRAYELIKS--NNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEp----v~s~~G~~~~~~~~L~~l~~l~~~--~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      +++|++.+.     .++++|++|+    +.+++|.+.+    +++|.++|++  ||+++|+||+|..+ ..+...  .  
T Consensus       149 ~e~l~~ai~-----~~tklV~i~~s~g~p~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~-~~~~~p--~--  214 (409)
T 3jzl_A          149 FPRIAKKMT-----PKTKMIGIQRSRGYADRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEF-VEYQEP--P--  214 (409)
T ss_dssp             HHHHHHHCC-----TTEEEEEEECSCTTSSSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTT-TSSCCS--G--
T ss_pred             HHHHHHhcc-----CCCeEEEEECCCCCCCCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccc-cccCCc--c--
Confidence            577777664     3688999999    8888887765    9999999999  99999999998743 212111  1  


Q ss_pred             cCCCcchh--hhccccCCC--CceEEEEecHHHHHHhhccc----cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322        114 HGVSPDIV--TMAKGIANG--FPMGAVVTTTEIAQVLTKAA----HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS  185 (195)
Q Consensus       114 ~~~~pdi~--~~sK~l~~G--~~~g~v~~~~~i~~~l~~~~----~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~  185 (195)
                       ....|++  +++|.++++  ..+|++++++++++.+....    ...+.+..+..+.+++..++.+  +..+++..++.
T Consensus       215 -~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a  291 (409)
T 3jzl_A          215 -EVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGA  291 (409)
T ss_dssp             -GGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             -ccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHH
Confidence             1234655  668999954  24799999999998887632    1122333222233344444432  45677888889


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      .++.+.|++
T Consensus       292 ~~la~~L~~  300 (409)
T 3jzl_A          292 RFTAAMLAE  300 (409)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999888875

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.21  E-value=2.5e-11  Score=100.57  Aligned_cols=145  Identities=11%  Similarity=0.030  Sum_probs=90.9

Q ss_pred             HHHHHH-HHHhcC--CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc--ccCCCccccccc
Q psy13322         40 YEQLVN-AFQYNV--PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG--RTGDNYWGFEMH  114 (195)
Q Consensus        40 ~~~l~~-~l~~~~--~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g--r~G~~~~~~~~~  114 (195)
                      +++|++ .+++..  .+.++++|++++.. ++|. +++.+++++|+++|++||++||+||+|..+.  ..|..   ....
T Consensus       123 ~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~~  197 (356)
T 1v72_A          123 IVRLRERTREKVGDVHTTQPACVSITQAT-EVGS-IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS---PAEM  197 (356)
T ss_dssp             HHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSC-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC---TTTT
T ss_pred             HHHHHHHhhhcchhhccCCceEEEEEcCC-CCCc-cCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC---HHHh
Confidence            677887 776420  11268999999964 5885 6788999999999999999999999997432  12321   1111


Q ss_pred             C--CCcchh--hhccccCCCCceE--EEEecHHHHHHhhccc-cccCCCchHHHHHHHHHHHHhhcch---hHHHHHHHH
Q psy13322        115 G--VSPDIV--TMAKGIANGFPMG--AVVTTTEIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKDE---ELQYNCKQV  184 (195)
Q Consensus       115 ~--~~pdi~--~~sK~l~~G~~~g--~v~~~~~i~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~~---~~~~~l~~~  184 (195)
                      +  ...|++  ++||+   |+|+|  ++++++++++.+.... +..+....  +..++.++++.++++   ++.++++++
T Consensus       198 ~~~~~~d~~~~s~sK~---g~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~  272 (356)
T 1v72_A          198 TWKAGVDALSFGATKN---GVLAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAA  272 (356)
T ss_dssp             TGGGTCCEEEECCGGG---TCSSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred             hhhhcCCEEEEecccC---CCcCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            1  134544  45787   34655  7777888877665331 12222221  122333445544432   467788899


Q ss_pred             HHHHHHHhhc
Q psy13322        185 SAQIIGYLRV  194 (195)
Q Consensus       185 ~~~l~~~L~~  194 (195)
                      ++++.+.|++
T Consensus       273 ~~~l~~~L~~  282 (356)
T 1v72_A          273 AQRLAQGLEG  282 (356)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            9999998865

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.21  E-value=7.2e-11  Score=102.39  Aligned_cols=140  Identities=10%  Similarity=0.110  Sum_probs=94.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcc----cCCCCCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCccccCCCcccccc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAES----IQGVSGVKEFPRYFLRRAYELIKS--NNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEp----v~s~~G~~~~~~~~L~~l~~l~~~--~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      +++|++.+.++   .++++|++++    +.++.|.+..    +++|+++|++  ||+++|+||+|..+.....   ... 
T Consensus       164 ~e~l~~~l~~~---~~tklV~i~~s~~~p~nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~---p~~-  232 (427)
T 3i16_A          164 LEEIEKVLKED---ESITLVHIQRSTGYGWRRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKE---PTD-  232 (427)
T ss_dssp             HHHHHHHHHTC---TTEEEEEEECSCCSSSSCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSC---GGG-
T ss_pred             HHHHHHHhhCC---CCCEEEEEEcCCCCCCCCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCC---ccc-
Confidence            68888888752   3688999999    8888887755    9999999999  9999999999974321221   111 


Q ss_pred             cCCCcchh--hhccccCC-C-CceEEEEecHHHHHHhhccccccCCC--chH-HHHHHHHHHHHhhcc-hhHHHHHHHHH
Q psy13322        114 HGVSPDIV--TMAKGIAN-G-FPMGAVVTTTEIAQVLTKAAHFNTFG--GNP-VGCVIASTVLDVIKD-EELQYNCKQVS  185 (195)
Q Consensus       114 ~~~~pdi~--~~sK~l~~-G-~~~g~v~~~~~i~~~l~~~~~~~t~~--~~p-~~~~aa~aal~~~~~-~~~~~~l~~~~  185 (195)
                      .+  .|++  +++|.+++ | ..+|++++++++++.+........++  ..| +.  ++..+++.+.. +..+++..++.
T Consensus       233 ~g--aDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~--~a~~~l~gl~~~~~r~~~~~~~a  308 (427)
T 3i16_A          233 VG--ADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFG--VVRSMYQGLFLAPHISMEALKGA  308 (427)
T ss_dssp             GT--CSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cC--CeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            23  3554  66899985 4 45799999999999887632111111  112 22  12333443332 45678888888


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      .++.+.|++
T Consensus       309 ~~la~~L~~  317 (427)
T 3i16_A          309 ILCSRIMEL  317 (427)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888888865

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.21  E-value=5e-11  Score=103.60  Aligned_cols=149  Identities=11%  Similarity=-0.061  Sum_probs=94.8

Q ss_pred             HHHHHHHH-HhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAF-QYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l-~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.| +.... .++.+|++....++.|.+.+    +++|.++|++||+++++||+|.++.. |............+
T Consensus       216 ~~~l~~~i~~~~~~-~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~~-g~~~~~~~~~~~~~  289 (456)
T 2z67_A          216 VEDIENAIKKEIEL-GNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNN-YYLEKLKKAFKYRV  289 (456)
T ss_dssp             HHHHHHHHHHHHHT-TCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCH-HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhhC-CCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHHH-HhhHHHHHhhCCCC
Confidence            67888888 42111 25666766666677898876    99999999999999999999986532 21000111111157


Q ss_pred             chhhh--ccccCCCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTM--AKGIANGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~--sK~l~~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++  +|.+++++.+|++++ ++++++.+.....+.....+.+++.+++..+....-+++.++..++.++|.+.|++
T Consensus       290 D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~  368 (456)
T 2z67_A          290 DAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND  368 (456)
T ss_dssp             SEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77766  598777788999999 56777777543332222222333333333332111256778888999999988864

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.19  E-value=1.2e-10  Score=102.08  Aligned_cols=140  Identities=16%  Similarity=0.172  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.+.+.    ++++|++ ...+.+  .+.+   +++|+++|++||++||+||+|. |+...|.....+.    ..
T Consensus       182 ~d~le~~i~~~----~tklIi~-~~sn~~--~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~  247 (483)
T 1rv3_A          182 YDRLEENARLF----HPKLIIA-GTSCYS--RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HC  247 (483)
T ss_dssp             HHHHHHHHHHH----CCSEEEE-CCSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TC
T ss_pred             HHHHHHHHhhc----CCcEEEE-eCCcCC--CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CC
Confidence            68888888754    3447777 554444  4444   8999999999999999999997 4433343111111    24


Q ss_pred             chhhh--ccccCCCCceEEEEecHH---------------HHHHhhccccccCC-CchHHHHHHHHHHHHhhcc---hhH
Q psy13322        119 DIVTM--AKGIANGFPMGAVVTTTE---------------IAQVLTKAAHFNTF-GGNPVGCVIASTVLDVIKD---EEL  177 (195)
Q Consensus       119 di~~~--sK~l~~G~~~g~v~~~~~---------------i~~~l~~~~~~~t~-~~~p~~~~aa~aal~~~~~---~~~  177 (195)
                      |++++  +|+|+ |+++|+++++++               +.+.+....+.... +.+...+++..++++.+.+   ++.
T Consensus       248 div~~s~~K~l~-GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~  326 (483)
T 1rv3_A          248 HVVTTTTHKTLR-GCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEY  326 (483)
T ss_dssp             SEEEEESSGGGC-CCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             cEEEecCcccCC-CCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHH
Confidence            66655  59995 678899999874               33444332222222 2344556666677876643   567


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      .+++.+++++|.+.|++
T Consensus       327 ~~~~~~~~~~l~~~L~~  343 (483)
T 1rv3_A          327 QRQVVANCRALSAALVE  343 (483)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            78899999999998875

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.19  E-value=3.3e-11  Score=100.92  Aligned_cols=134  Identities=16%  Similarity=0.150  Sum_probs=88.8

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI  120 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi  120 (195)
                      ++|++.+.     .++++|+   +.++.|...+    +++|.++|++||+++|+||+|+.+...     .....+..+|+
T Consensus       116 ~~l~~~~~-----~~~~~v~---~~n~~G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~~~-----~~~~~~~~~d~  178 (374)
T 3uwc_A          116 EKIEAAIT-----DKTKAIM---PVHYTGNIAD----MPALAKIAKKHNLHIVEDACQTILGRI-----NDKFVGSWGQF  178 (374)
T ss_dssp             GGTGGGCC-----TTEEEEC---CBCGGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEE-----TTEETTSSSSE
T ss_pred             HHHHHhCC-----CCceEEE---EeCCcCCcCC----HHHHHHHHHHcCCEEEEeCCCccCcee-----CCeeccccccE
Confidence            44555443     2566666   4456787665    999999999999999999999832221     12233444688


Q ss_pred             hhhc----cccCC-CCceEEEEecH-HHHHHhhccc------------cccCCCchHHHHHHHHHHHHhhcchhHHHHHH
Q psy13322        121 VTMA----KGIAN-GFPMGAVVTTT-EIAQVLTKAA------------HFNTFGGNPVGCVIASTVLDVIKDEELQYNCK  182 (195)
Q Consensus       121 ~~~s----K~l~~-G~~~g~v~~~~-~i~~~l~~~~------------~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~  182 (195)
                      +++|    |.+++ |. +|++++++ ++.+.+....            ...++..+++.+++++..++.+  +++.++.+
T Consensus       179 ~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~  255 (374)
T 3uwc_A          179 ACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRR  255 (374)
T ss_dssp             EEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHH
T ss_pred             EEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHH
Confidence            8877    99986 65 78888764 5665554321            1223344677766666665544  45778888


Q ss_pred             HHHHHHHHHhhc
Q psy13322        183 QVSAQIIGYLRV  194 (195)
Q Consensus       183 ~~~~~l~~~L~~  194 (195)
                      ++.+++.+.|++
T Consensus       256 ~~~~~l~~~l~~  267 (374)
T 3uwc_A          256 GIAHLYDQSFVD  267 (374)
T ss_dssp             HHHHHHHHHTGG
T ss_pred             HHHHHHHHHhcc
Confidence            888888888865

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.18  E-value=9.3e-11  Score=102.80  Aligned_cols=149  Identities=11%  Similarity=0.045  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-C
Q psy13322         40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-S  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~  117 (195)
                      +++|++.|++....+ ++.+|++....+.+|.+.+    |++|.++|++||+++++|++|+++..... + .....++ .
T Consensus       242 ~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~-~~~~~gi~~  315 (497)
T 2qma_A          242 ITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-H-KSRLKGVER  315 (497)
T ss_dssp             GGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-T-GGGGTTGGG
T ss_pred             HHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-c-hHhhcCccc
Confidence            467777776531111 3557888777777898766    99999999999999999999998765443 2 2223355 6


Q ss_pred             cchhhh--ccccCCCCceEEEEecHH-HHHHhhccc-cc---cCCCchHHH----------HHHHHHHHHhhcc---hhH
Q psy13322        118 PDIVTM--AKGIANGFPMGAVVTTTE-IAQVLTKAA-HF---NTFGGNPVG----------CVIASTVLDVIKD---EEL  177 (195)
Q Consensus       118 pdi~~~--sK~l~~G~~~g~v~~~~~-i~~~l~~~~-~~---~t~~~~p~~----------~~aa~aal~~~~~---~~~  177 (195)
                      +|++++  +|.+++++++|+++++++ .++.+.... +.   .+...++..          ..+..++++.+..   +++
T Consensus       316 ~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~  395 (497)
T 2qma_A          316 AHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDM  395 (497)
T ss_dssp             CSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHH
T ss_pred             CCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHH
Confidence            788777  799997788999998754 334332211 10   000112221          1223345555433   467


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      .+++.+++++|.+.|++
T Consensus       396 ~~~~~~~a~~l~~~L~~  412 (497)
T 2qma_A          396 YDHLLAQTLEVADMIRT  412 (497)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            78888999999999875

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.18  E-value=1.3e-10  Score=100.76  Aligned_cols=140  Identities=11%  Similarity=0.039  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcc----cCCCCCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCccccCCCcccccc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAES----IQGVSGVKEFPRYFLRRAYELIKS--NNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEp----v~s~~G~~~~~~~~L~~l~~l~~~--~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      +++|++.+.++   .++++|++++    +.+++|.+..    +++|+++|++  ||+++|+||+|..+.....   ... 
T Consensus       164 ~e~l~~~i~~~---~~tklV~i~~s~gyp~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~---p~~-  232 (427)
T 3hvy_A          164 INTVKEELKKD---DSIKLIHIQRSTGYGWRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKE---PTD-  232 (427)
T ss_dssp             HHHHHHHHHHC---TTEEEEEEESSCCSSSSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSC---GGG-
T ss_pred             HHHHHHHhhCC---CCCEEEEEECCCCCCCCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCC---Ccc-
Confidence            68888888753   3688999999    7888887654    9999999999  8999999999974321221   111 


Q ss_pred             cCCCcchh--hhccccCCC--CceEEEEecHHHHHHhhccc--c--ccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322        114 HGVSPDIV--TMAKGIANG--FPMGAVVTTTEIAQVLTKAA--H--FNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS  185 (195)
Q Consensus       114 ~~~~pdi~--~~sK~l~~G--~~~g~v~~~~~i~~~l~~~~--~--~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~  185 (195)
                      .+  .|++  +++|.++++  ..+|++++++++++.+....  .  +.+.+.++..+..++..++.+  +..+++..++.
T Consensus       233 ~g--aDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a  308 (427)
T 3hvy_A          233 VG--ADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGA  308 (427)
T ss_dssp             GT--CSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             cC--CeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHH
Confidence            22  3554  668999954  35789999999998887632  1  112222122233333344332  45677888888


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      .++.+.|++
T Consensus       309 ~~la~~L~~  317 (427)
T 3hvy_A          309 VFCARIMEL  317 (427)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888888865

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.17  E-value=9.5e-11  Score=101.10  Aligned_cols=137  Identities=13%  Similarity=0.091  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS--NNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~--~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      +++|++.|+     .++++|++|.+.++.|.+.+    +++|.++|++  ||+++|+||+|+. +..+.   ..   ...
T Consensus       157 ~~~le~ai~-----~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a~-~~~~~---p~---~~g  220 (415)
T 2fq6_A          157 GADIVKHLQ-----PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAA-GVLFK---AL---DFG  220 (415)
T ss_dssp             GGGGGGGCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTT-TTSSC---GG---GGT
T ss_pred             HHHHHHhhc-----cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCcc-cccCC---cc---ccC
Confidence            455555553     36889999999999998887    9999999999  9999999999973 22222   12   223


Q ss_pred             cchh--hhccccCC-CC-ceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        118 PDIV--TMAKGIAN-GF-PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       118 pdi~--~~sK~l~~-G~-~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      .|++  +++|.+++ |. .+|++++++++++.+...........+|+.+.+++.+++.+.  ...++..++...+.+.|+
T Consensus       221 ~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l~--~r~~~~~~n~~~l~~~L~  298 (415)
T 2fq6_A          221 IDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLG--VRLRQHHESSLKVAEWLA  298 (415)
T ss_dssp             CSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHH
Confidence            5766  55799994 44 468999988777766543321222346776666666666542  234555566666666664


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       299 ~  299 (415)
T 2fq6_A          299 E  299 (415)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.17  E-value=6.1e-11  Score=102.96  Aligned_cols=129  Identities=12%  Similarity=-0.013  Sum_probs=85.5

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-ccccCCCcccccccCCCcchhhhc--cccCCCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHGVSPDIVTMA--KGIANGF  131 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~gr~G~~~~~~~~~~~~pdi~~~s--K~l~~G~  131 (195)
                      ++++|++.+ ++.+|.+.+    +++|.++|++||+++|+||+|++ +.+.+. .......  .+|+++.|  |.++++.
T Consensus       146 ~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~--g~Di~~~S~~K~l~~~~  217 (446)
T 2x3l_A          146 GHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNY--QADYVVQSFHKTLPALT  217 (446)
T ss_dssp             -CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGG--TCSEEEECHHHHSSSCT
T ss_pred             CceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHc--CCCEEEECCcccccccc
Confidence            566777777 666888776    99999999999999999999986 333332 2222222  36777654  9887666


Q ss_pred             ceEEEEecHHHHH--Hhhccc-cccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHH
Q psy13322        132 PMGAVVTTTEIAQ--VLTKAA-HFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       132 ~~g~v~~~~~i~~--~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~l~~~  191 (195)
                      ++|++++++++++  .+.... ...+.+.+...+++..++++.++.   +++.++.+++.+++++.
T Consensus       218 g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~  283 (446)
T 2x3l_A          218 MGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK  283 (446)
T ss_dssp             TCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc
Confidence            6899999876543  232211 222344566666666667776643   33778888888877664

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.17  E-value=1.3e-10  Score=96.42  Aligned_cols=130  Identities=13%  Similarity=0.111  Sum_probs=93.8

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCccccCCCcccccccCCCcchhhh--ccccCCC
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN-NGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM--AKGIANG  130 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~-~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~--sK~l~~G  130 (195)
                      +++++|++..+.+.+|.+.+    +++|.++|++| |+++|+||+|+ ++....   ...    ..|++++  +|.++++
T Consensus       129 ~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~p~~~li~D~a~~-~~~~~~---~~~----~~d~~~~s~~K~~~~~  196 (362)
T 3ffr_A          129 ADAEIICLTHNETSSGVSMP----VEDINTFRDKNKDALIFVDAVSS-LPYPKF---DWT----KIDSVFFSVQKCFGLP  196 (362)
T ss_dssp             TTCCEEEEESEETTTTEECC----HHHHTTSGGGSTTSEEEEECTTT-TTSSCC---CTT----SCSEEEEETTSTTCCC
T ss_pred             CCccEEEEEcCCCCcceeCC----HHHHHHHHHhCCCCEEEEecccc-cCCccc---Chh----HCcEEEEecccccCCC
Confidence            36788999999999998777    99999999999 99999999987 322111   111    1566644  5999833


Q ss_pred             CceEEEEecHHHHHHhhcccc--------------------cc-CCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHHH
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAH--------------------FN-TFGGNPVGCVIASTVLDVIKD---EELQYNCKQVSA  186 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~--------------------~~-t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~  186 (195)
                      -.+|++++++++++.+.....                    .. .++.++.++.++.++++.+.+   +++.++.+++.+
T Consensus       197 ~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  276 (362)
T 3ffr_A          197 AGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAA  276 (362)
T ss_dssp             SCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            236888889888776654211                    11 345577788888888886643   567888999999


Q ss_pred             HHHHHhhcC
Q psy13322        187 QIIGYLRVV  195 (195)
Q Consensus       187 ~l~~~L~~l  195 (195)
                      ++.+.|+++
T Consensus       277 ~l~~~L~~~  285 (362)
T 3ffr_A          277 LINTYIESS  285 (362)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHc
Confidence            999988753

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.14  E-value=3.3e-10  Score=95.78  Aligned_cols=134  Identities=13%  Similarity=0.126  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~p  118 (195)
                      +++|++.+.     .++++|++...   .|...+    +++|.++|++||+++|+||+|+ |....+      ..+|..+
T Consensus       118 ~~~l~~~i~-----~~~~~v~~~~~---~g~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~------~~~g~~~  179 (390)
T 3b8x_A          118 IESLKEAVT-----DSTKAILTVNL---LGNPNN----FDEINKIIGGRDIILLEDNCESMGATFNN------KCAGTFG  179 (390)
T ss_dssp             HHHHHHHCC-----TTEEEEEEECG---GGCCCC----HHHHHHHHTTSCCEEEEECTTCTTCEETT------EETTSSS
T ss_pred             HHHHHHHhC-----cCCeEEEEECC---ccChhh----HHHHHHHHHHcCCEEEEECcCcccCEECC------ccccccc
Confidence            577777765     25667777433   344433    9999999999999999999998 332211      3356677


Q ss_pred             chhhhccccC----CCCceEEEEecH-HHHHHhhcc---c----------------------------cccCCCchHHHH
Q psy13322        119 DIVTMAKGIA----NGFPMGAVVTTT-EIAQVLTKA---A----------------------------HFNTFGGNPVGC  162 (195)
Q Consensus       119 di~~~sK~l~----~G~~~g~v~~~~-~i~~~l~~~---~----------------------------~~~t~~~~p~~~  162 (195)
                      |+.++||..+    +| .+|++++++ ++.+.+...   .                            .+.++..+++.+
T Consensus       180 ~~~~~s~~~~k~~~~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a  258 (390)
T 3b8x_A          180 LMGTFSSFYSNHIATM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSG  258 (390)
T ss_dssp             SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHH
T ss_pred             ceEEEEccCCCCCccC-CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHH
Confidence            8888775444    22 358888875 665544321   1                            012233678888


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        163 VIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       163 ~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++++.++.++  +..++.+++.+++.+.|++
T Consensus       259 a~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~  288 (390)
T 3b8x_A          259 AIGIEQLKKLP--RFISVRRKNAEYFLDKFKD  288 (390)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHhcC
Confidence            88888887653  5778888999999998865

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.11  E-value=3.6e-10  Score=99.62  Aligned_cols=140  Identities=18%  Similarity=0.124  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAE-SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivE-pv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~  116 (195)
                      ++++|++.+....+    ++|++. |.+++   ..+    +++|+++|++||++|++|++|. |+...|.....+.    
T Consensus       191 D~d~le~~l~~~~~----klIi~~~s~~~~---~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----  255 (490)
T 2a7v_A          191 DYNQLALTARLFRP----RLIIAGTSAYAR---LID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----  255 (490)
T ss_dssp             CHHHHHHHHHHHCC----SEEEECCSSCCS---CCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----
T ss_pred             CHHHHHHHHhhcCC----cEEEEcCCCCCC---ccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----
Confidence            37889988875432    356654 44442   222    8999999999999999999986 4323332111111    


Q ss_pred             Ccchh--hhccccCCCCceEEEEecHH---------------HHHHhhccccccCCCc-hHHHHHHHHHHHHhhcc---h
Q psy13322        117 SPDIV--TMAKGIANGFPMGAVVTTTE---------------IAQVLTKAAHFNTFGG-NPVGCVIASTVLDVIKD---E  175 (195)
Q Consensus       117 ~pdi~--~~sK~l~~G~~~g~v~~~~~---------------i~~~l~~~~~~~t~~~-~p~~~~aa~aal~~~~~---~  175 (195)
                      ..|++  +++|+|+ |+++|+++++++               +.+.++...+..+.++ ++..+++..++++.+..   +
T Consensus       256 ~aDiv~~S~hK~l~-Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~  334 (490)
T 2a7v_A          256 HADIVTTTTHKTLR-GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFR  334 (490)
T ss_dssp             TCSEEEEESSGGGC-SCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHH
T ss_pred             CCCEEEECCcccCc-cccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHH
Confidence            24665  4469995 467789988764               4455554434444443 44455555567766532   4


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      +..+++.++.++|.+.|++
T Consensus       335 ~~~~~~~~na~~L~~~L~~  353 (490)
T 2a7v_A          335 EYSLQVLKNARAMADALLE  353 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6778899999999999875

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.10  E-value=4.6e-10  Score=95.79  Aligned_cols=136  Identities=13%  Similarity=0.097  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc-ccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG-RTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g-r~G~~~~~~~~~~~~p  118 (195)
                      +++|++.+.     .++++|++..   ..|...+    +++|.++|++||++||+||+|+.+. +.|. .  ...++ ..
T Consensus       120 ~~~l~~~i~-----~~~~~v~~~~---~~G~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~--~~~~~-~~  183 (418)
T 2c81_A          120 PQLIKSAIT-----DKTKAIIPVH---LFGSMAN----MDEINEIAQEHNLFVIEDCAQSHGSVWNNQ-R--AGTIG-DI  183 (418)
T ss_dssp             HHHHGGGCC-----TTEEEECCBC---CTTCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTE-E--TTSSS-SE
T ss_pred             HHHHHHhhC-----CCCeEEEEeC---CcCCccc----HHHHHHHHHHCCCEEEEECcccccCccCCE-e--ccccc-ce
Confidence            466666554     3677888765   4566544    9999999999999999999999654 3332 1  11111 13


Q ss_pred             chhhh--ccccCCCCceEEEEec-HHHHHHhhccc-cc-------------cC--------C----CchHHHHHHHHHHH
Q psy13322        119 DIVTM--AKGIANGFPMGAVVTT-TEIAQVLTKAA-HF-------------NT--------F----GGNPVGCVIASTVL  169 (195)
Q Consensus       119 di~~~--sK~l~~G~~~g~v~~~-~~i~~~l~~~~-~~-------------~t--------~----~~~p~~~~aa~aal  169 (195)
                      ++.+|  +|.+++| ++|+++++ +++++.+.... .+             +.        .    ..+++..+.++..+
T Consensus       184 ~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l  262 (418)
T 2c81_A          184 GAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQL  262 (418)
T ss_dssp             EEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHH
T ss_pred             EEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHH
Confidence            34456  8999987 89999995 67766654321 10             00        0    12344444444444


Q ss_pred             HhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        170 DVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       170 ~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.+  ++..++.+++.+++.+.|++
T Consensus       263 ~~~--~~~~~~~~~~~~~l~~~L~~  285 (418)
T 2c81_A          263 QEL--DDKNAIREKNAMFLNDALSK  285 (418)
T ss_dssp             TTH--HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHH--HHHHHHHHHHHHHHHHHhcc
Confidence            433  45677778888888888865

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.10  E-value=5.5e-10  Score=96.80  Aligned_cols=139  Identities=14%  Similarity=0.047  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|++|++.++.|.+.+    +++|.++|++||+++|+||+|+ .+..    .....+|....
T Consensus       157 ~~~l~~ai~-----~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~-~~~~----~~~~~~g~div  222 (430)
T 3ri6_A          157 SLAVEHACD-----ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMT-PPYL----LEAKRLGVDIE  222 (430)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTS-CTTT----CCGGGGTCSEE
T ss_pred             HHHHHHhhC-----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-cccc----CChHHcCCEEE
Confidence            567777664     37889999999999998876    9999999999999999999997 2221    11223354434


Q ss_pred             hhhhccccCC-CC-ceEEEEe--cHHH------------------HHHhhccc-cccCCCchHHHHHHHHHHHHhhcchh
Q psy13322        120 IVTMAKGIAN-GF-PMGAVVT--TTEI------------------AQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKDEE  176 (195)
Q Consensus       120 i~~~sK~l~~-G~-~~g~v~~--~~~i------------------~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~~~  176 (195)
                      +.+++|.+++ |. ..|+++.  +..+                  +..+.... .......+|+.+..++..++.+.  .
T Consensus       223 ~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~--~  300 (430)
T 3ri6_A          223 VLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMA--L  300 (430)
T ss_dssp             EEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHH--H
T ss_pred             EECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHH--H
Confidence            4566799985 43 3455552  2111                  12221111 11222346777776666666553  3


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy13322        177 LQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       177 ~~~~l~~~~~~l~~~L~~  194 (195)
                      .+++..++...+.+.|++
T Consensus       301 r~~~~~~na~~la~~L~~  318 (430)
T 3ri6_A          301 RIERSCQNAQELAHWLLS  318 (430)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            456667777777777754

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.09  E-value=2.1e-10  Score=96.85  Aligned_cols=133  Identities=17%  Similarity=0.143  Sum_probs=86.7

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-ccccCCCcccccccCCCcc
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++|++.+.     .++++|++..   ..|...+    +++|.++|++||+++|+||+|+. ..+.+.      ..+..+|
T Consensus       135 ~~l~~~~~-----~~~~~v~~~n---~tG~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~~------~~~~~~d  196 (391)
T 3dr4_A          135 AKLEALIT-----PRTKAIMPVH---LYGQICD----MDPILEVARRHNLLVIEDAAEAVGATYRGK------KSGSLGD  196 (391)
T ss_dssp             GGSGGGCC-----TTEEEECCBC---GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTE------ETTSSSS
T ss_pred             HHHHHhcC-----CCceEEEEEC---CCCChhh----HHHHHHHHHHcCCEEEEECcccccceECCe------eecccCC
Confidence            45555443     3677777543   4566555    99999999999999999999982 222221      1233357


Q ss_pred             hhhhc----cccCCCCceEEEEecH-HHHHHhhccc-cc-------------cCCCchHHHHHHHHHHHHhhcchhHHHH
Q psy13322        120 IVTMA----KGIANGFPMGAVVTTT-EIAQVLTKAA-HF-------------NTFGGNPVGCVIASTVLDVIKDEELQYN  180 (195)
Q Consensus       120 i~~~s----K~l~~G~~~g~v~~~~-~i~~~l~~~~-~~-------------~t~~~~p~~~~aa~aal~~~~~~~~~~~  180 (195)
                      ++++|    |++++| ++|++++++ ++.+.+.... ++             ..+..+++.+++++..++.+  ++..++
T Consensus       197 i~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~  273 (391)
T 3dr4_A          197 CATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAA  273 (391)
T ss_dssp             EEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHH
T ss_pred             EEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHH
Confidence            77776    999764 577877764 5666554321 11             12455677777666666544  446788


Q ss_pred             HHHHHHHHHHHhhc
Q psy13322        181 CKQVSAQIIGYLRV  194 (195)
Q Consensus       181 l~~~~~~l~~~L~~  194 (195)
                      .+++.+++.+.|++
T Consensus       274 ~~~~~~~l~~~L~~  287 (391)
T 3dr4_A          274 RERVVGWYEQKLAR  287 (391)
T ss_dssp             HHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhhc
Confidence            88888888888875

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.06  E-value=4.4e-10  Score=95.63  Aligned_cols=127  Identities=14%  Similarity=0.121  Sum_probs=87.5

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC--CEEEEeccccCccccCCCcccccc-cCCCcchhhhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN--GLFISDEVQTGFGRTGDNYWGFEM-HGVSPDIVTMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~--~llI~DEv~~g~gr~G~~~~~~~~-~~~~pdi~~~sK~l~-~G  130 (195)
                      ++++|++....+.+|.+..      +|.+  ++|+  +++|+||+|..    +. ...+.. .+..--+.+|||.+| .|
T Consensus       157 ~~k~v~l~~p~NPtG~~~~------~l~~--~~~~~~~~ii~De~y~~----~~-~~~l~~~~~~~i~~~S~SK~~g~~G  223 (391)
T 3bwn_A          157 GPYIELVTSPNNPDGTIRE------TVVN--RPDDDEAKVIHDFAYYW----PH-YTPITRRQDHDIMLFTFSKITGHAG  223 (391)
T ss_dssp             SCEEEEEESSCTTTCCCCC------CCC-------CCCEEEEECTTCS----TT-TSCCCCCBCCSEEEEEHHHHHSCGG
T ss_pred             CCEEEEECCCCCCCchhHH------HHHH--HhhcCCCEEEEeCCCCC----CC-CCccccCCCCeEEEEechhhcCCCc
Confidence            5677878777888998763      2323  2266  99999999972    21 111211 111122347799998 89


Q ss_pred             CceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhh----------cc--hhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI----------KD--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~----------~~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++||+++ ++++++.+.......+++.+++++.++.++|+..          ++  ++++++++++++++.+.|++
T Consensus       224 lRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  300 (391)
T 3bwn_A          224 SRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKE  300 (391)
T ss_dssp             GCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999997 8888888876544345677889999999999753          22  56788899999999999875

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=98.99  E-value=6.7e-09  Score=91.66  Aligned_cols=150  Identities=10%  Similarity=0.005  Sum_probs=94.5

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-C
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-S  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~  117 (195)
                      +++|++.|++.... ..+.+|++....++.|.+-+    |++|.++|++||+++++|++|++.-.....+ .....|+ .
T Consensus       232 ~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~-~~~~~g~~~  306 (511)
T 3vp6_A          232 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKH-RHKLNGIER  306 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTT-GGGGTTGGG
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhh-hhhccCCcc
Confidence            68888888753211 24788999999999998866    9999999999999999999998643322211 1111233 4


Q ss_pred             cchhhh--ccccCCCCceEEEEecH-HHHHHhhccc--ccc---------------CC-C---chHHHHHHHHHHHHhhc
Q psy13322        118 PDIVTM--AKGIANGFPMGAVVTTT-EIAQVLTKAA--HFN---------------TF-G---GNPVGCVIASTVLDVIK  173 (195)
Q Consensus       118 pdi~~~--sK~l~~G~~~g~v~~~~-~i~~~l~~~~--~~~---------------t~-~---~~p~~~~aa~aal~~~~  173 (195)
                      .|++++  .|.+++....|++++++ ++........  +..               +. .   ...+.+.+++.++..-.
T Consensus       307 aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~g  386 (511)
T 3vp6_A          307 ANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVG  386 (511)
T ss_dssp             CSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHH
Confidence            476655  59998555578877765 4444432211  100               11 1   12344444444442212


Q ss_pred             chhHHHHHHHHHHHHHHHhhc
Q psy13322        174 DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       174 ~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      -+++.++..++.+++.+.|++
T Consensus       387 l~~~~~~~~~~a~~l~~~L~~  407 (511)
T 3vp6_A          387 FENQINKCLELAEYLYAKIKN  407 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            256788899999999999875

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=98.90  E-value=2.9e-09  Score=88.48  Aligned_cols=122  Identities=16%  Similarity=0.189  Sum_probs=84.8

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhh--hccccC-CC
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVT--MAKGIA-NG  130 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~--~sK~l~-~G  130 (195)
                      .++++|++..+.+.+|.+.+         +++++||+++|+||+|+.+...    .....+    |+++  ++|.++ .|
T Consensus       140 ~~~k~v~~~~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~----~~~~~~----di~~~s~sK~~~~~G  202 (360)
T 1w23_A          140 ENDAYLHITSNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP----LKVNQF----GMIYAGAQKNLGPSG  202 (360)
T ss_dssp             TTEEEEEEESEETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC----CCGGGC----SEEEEETTTTTSCTT
T ss_pred             CCCCEEEEeCCCCCcceecc---------cccccCCceEEEechhhcCCCC----cCcccC----CEEEEEcccccCCCC
Confidence            36888999999999998754         2333899999999999843221    112222    6654  469998 45


Q ss_pred             CceEEEEecHHHHHHhhccc-----------cccCC-CchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAA-----------HFNTF-GGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~-----------~~~t~-~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~  194 (195)
                        +|++++++++++.+....           ...++ +.++.+++++.++++.+.+    +++.++++++++++.+.|++
T Consensus       203 --~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  280 (360)
T 1w23_A          203 --VTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE  280 (360)
T ss_dssp             --CEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --cEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence              899999998876554421           11222 3467777888888887643    45788899999999998875

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=98.87  E-value=3.5e-09  Score=97.08  Aligned_cols=146  Identities=12%  Similarity=0.052  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhcCCCCC-eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc--ccCC
Q psy13322         40 YEQLVNAFQYNVPITG-AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE--MHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~-~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~--~~~~  116 (195)
                      .++|+++|+++..... .+.|++.|  +++|.+.+    +++|.++|++++  +|+||+|++....+..+.+..  ..+.
T Consensus       282 ~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~g~  353 (715)
T 3n75_A          282 HATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGR  353 (715)
T ss_dssp             HHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSC
T ss_pred             HHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEccccccccccCCccccccccccCc
Confidence            6889999987521111 14666677  78998887    899999998774  799999984322222110111  1122


Q ss_pred             Ccchh-----hhccccCCCC-ceEEEEecHHHH-HHhhcc-ccccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHH
Q psy13322        117 SPDIV-----TMAKGIANGF-PMGAVVTTTEIA-QVLTKA-AHFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQVS  185 (195)
Q Consensus       117 ~pdi~-----~~sK~l~~G~-~~g~v~~~~~i~-~~l~~~-~~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~  185 (195)
                      .+|++     +++|++++ + ..|++.+++++. +.+... ....|++.+++.+++..++++.++.   +++.+++.++.
T Consensus       354 ~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a  432 (715)
T 3n75_A          354 VEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERA  432 (715)
T ss_dssp             CTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            35643     56799874 2 357777765421 222222 2345667888999999999998853   56889999999


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      ++|++.|++
T Consensus       433 ~~~r~~L~~  441 (715)
T 3n75_A          433 IKFRKEIKR  441 (715)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=98.83  E-value=3.8e-08  Score=85.73  Aligned_cols=150  Identities=10%  Similarity=-0.007  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-C
Q psy13322         40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-S  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~  117 (195)
                      +++|++.|.+....+ ...+|++....+..|.+-+    +++|.++|++||+++++|++|+++-.....+.. ...++ .
T Consensus       219 ~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~-~~~g~~~  293 (486)
T 1js3_A          219 ASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRH-LLNGVEF  293 (486)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGG-GGTTGGG
T ss_pred             HHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHH-HhcCccc
Confidence            688888886532111 2346666655677887766    999999999999999999999865332211111 11122 3


Q ss_pred             cchhhh--ccccCCCCceEEEEecHH--HHHHhhcc---ccc-----------------cCCCchHHHHHHHHHHHHhhc
Q psy13322        118 PDIVTM--AKGIANGFPMGAVVTTTE--IAQVLTKA---AHF-----------------NTFGGNPVGCVIASTVLDVIK  173 (195)
Q Consensus       118 pdi~~~--sK~l~~G~~~g~v~~~~~--i~~~l~~~---~~~-----------------~t~~~~p~~~~aa~aal~~~~  173 (195)
                      .|++++  +|.++..+.+|+++++++  +.+.+...   ...                 .+.....+++.+++..+..-.
T Consensus       294 adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g  373 (486)
T 1js3_A          294 ADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKG  373 (486)
T ss_dssp             CSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHH
T ss_pred             cCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHH
Confidence            466655  599886677899998754  23333110   000                 001123444444444442211


Q ss_pred             chhHHHHHHHHHHHHHHHhhc
Q psy13322        174 DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       174 ~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      -+++.++..++.+++.+.|++
T Consensus       374 ~~~~~~~~~~~a~~l~~~L~~  394 (486)
T 1js3_A          374 LQAYIRKHVQLSHEFEAFVLQ  394 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            256677888889999888865

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=98.79  E-value=2.4e-08  Score=92.16  Aligned_cols=148  Identities=13%  Similarity=0.106  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhcCC-----CCCe-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         40 YEQLVNAFQYNVP-----ITGA-AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        40 ~~~l~~~l~~~~~-----~~~~-aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      +++|++.|++...     ..++ +.++..|  +.+|.+.+    +++|.++|++||++|++||+|++.-..+..+.....
T Consensus       292 ~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~  365 (755)
T 2vyc_A          292 PETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYA  365 (755)
T ss_dssp             HHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSS
T ss_pred             HHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcCCEEEEECcCchhcccCcccCCcch
Confidence            6888888875311     0122 3455555  45787766    999999999999999999999743122210100111


Q ss_pred             -cC----C-Ccch-h--hhccccCCCCc-eEEEEecHH---H-HHHhhcc-ccccCCCchHHHHHHHHHHHHhhcc---h
Q psy13322        114 -HG----V-SPDI-V--TMAKGIANGFP-MGAVVTTTE---I-AQVLTKA-AHFNTFGGNPVGCVIASTVLDVIKD---E  175 (195)
Q Consensus       114 -~~----~-~pdi-~--~~sK~l~~G~~-~g~v~~~~~---i-~~~l~~~-~~~~t~~~~p~~~~aa~aal~~~~~---~  175 (195)
                       .+    + .+.+ +  +++|++++ .+ .|++.++++   + ...+... ....+.+.+.+.+++..++++.+..   +
T Consensus       366 ~~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~  444 (755)
T 2vyc_A          366 MRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGL  444 (755)
T ss_dssp             SCSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSTHHHH
T ss_pred             hcCCcCCccCCCeEEEECccccccC-cCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhHH
Confidence             22    1 1221 3  45799873 33 566666543   1 1122211 1223345677778888888887754   4


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++.+++.++.+++++.|++
T Consensus       445 ~~~~~~~~~a~~~r~~L~~  463 (755)
T 2vyc_A          445 SLTQEVIDEAVDFRQAMAR  463 (755)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            6778888888888888865

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=98.78  E-value=3.2e-08  Score=85.45  Aligned_cols=144  Identities=13%  Similarity=0.037  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCccc--cCCCcccc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN------NGLFISDEVQTGFGR--TGDNYWGF  111 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~------~~llI~DEv~~g~gr--~G~~~~~~  111 (195)
                      +++|++.|.     .++++|++.......|.+.+    +++|.++|++|      |+++++|++|.++..  ..... ..
T Consensus       177 ~~~l~~~i~-----~~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~  246 (452)
T 2dgk_A          177 PKRMIEACD-----ENTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDI-VW  246 (452)
T ss_dssp             HHHHHHHCC-----TTEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC-CC
T ss_pred             HHHHHHHHh-----hCCEEEEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccc-hh
Confidence            677887775     25677887777777898876    99999999996      999999999987532  11111 01


Q ss_pred             cccCC-Ccchhhhc--cccCCCCceEEEEecHH-HH-HHhhccc-cc----------cCCCc-hHHHHHHHHHHHHhhcc
Q psy13322        112 EMHGV-SPDIVTMA--KGIANGFPMGAVVTTTE-IA-QVLTKAA-HF----------NTFGG-NPVGCVIASTVLDVIKD  174 (195)
Q Consensus       112 ~~~~~-~pdi~~~s--K~l~~G~~~g~v~~~~~-i~-~~l~~~~-~~----------~t~~~-~p~~~~aa~aal~~~~~  174 (195)
                      . ..+ ..|+++++  |.+.+|+.+|+++++++ +. +.+.... +.          .+-.. +.+++.+++..+..-.-
T Consensus       247 ~-~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~  325 (452)
T 2dgk_A          247 D-FRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGY  325 (452)
T ss_dssp             S-TTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHH
T ss_pred             h-cCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHH
Confidence            1 111 34666664  85557788999999753 32 4332111 10          11111 33444444444422111


Q ss_pred             hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +++.++..+++++|.+.|++
T Consensus       326 ~~~~~~~~~~a~~l~~~L~~  345 (452)
T 2dgk_A          326 TKVQNASYQVAAYLADEIAK  345 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            46678888899999998875

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=98.77  E-value=1.4e-08  Score=86.07  Aligned_cols=125  Identities=10%  Similarity=0.058  Sum_probs=84.7

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh--ccccCCCCc
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM--AKGIANGFP  132 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~--sK~l~~G~~  132 (195)
                      ++++|++....+.+|.+.+    +++|.++   ||+++|+||+|+.+...    ....    .+|++++  +|.++.+..
T Consensus       165 ~~~~v~~~~~~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~~----~~~~----~~di~~~s~sK~~~~~gg  229 (398)
T 2fyf_A          165 SVDVIAWAHNETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGLP----VDIA----ETDAYYFAPQKNFASDGG  229 (398)
T ss_dssp             TCSEEEEESEETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTSC----CCGG----GCSEEEECTTSTTCSCSS
T ss_pred             CCCEEEEeCcCCCcceecc----hHHhhhh---cCCeEEEEeccccCCcc----cCcc----cCcEEEEecCcccCCCCc
Confidence            5677888888888998776    4444444   99999999999843221    1111    2566644  599994324


Q ss_pred             eEEEEecHHHHHHhhcc----------c----------cccC-CCchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHH
Q psy13322        133 MGAVVTTTEIAQVLTKA----------A----------HFNT-FGGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQ  187 (195)
Q Consensus       133 ~g~v~~~~~i~~~l~~~----------~----------~~~t-~~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~  187 (195)
                      +|++++++++++.+...          .          ...+ .+.+..+++++.++|+.+.+    +++.+++++++++
T Consensus       230 ~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~  309 (398)
T 2fyf_A          230 LWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQR  309 (398)
T ss_dssp             EEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             eEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            89999999887766321          0          0122 24567778888888887643    4567888999999


Q ss_pred             HHHHhhc
Q psy13322        188 IIGYLRV  194 (195)
Q Consensus       188 l~~~L~~  194 (195)
                      +.+.|++
T Consensus       310 l~~~L~~  316 (398)
T 2fyf_A          310 LYSWAQE  316 (398)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=98.76  E-value=8.7e-08  Score=83.74  Aligned_cols=150  Identities=11%  Similarity=-0.040  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-C
Q psy13322         40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-S  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~  117 (195)
                      +++|++.|++....+ ...+|++....++.|.+-+    |++|.++|++||+++++|++|.+....+..+ .....|+ .
T Consensus       225 ~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~-~~~~~gi~~  299 (481)
T 4e1o_A          225 GEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEF-RGFLKGIEY  299 (481)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGG-GGGGTTGGG
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhh-HHHhcCccc
Confidence            688888887532111 3556777767777898766    9999999999999999999998643333211 1111243 3


Q ss_pred             cchhhh--ccccCCCCceEEEEecH-HHHH-Hhhccc-cc-----------------cCCCchHHHHHHHHHHHHhhcch
Q psy13322        118 PDIVTM--AKGIANGFPMGAVVTTT-EIAQ-VLTKAA-HF-----------------NTFGGNPVGCVIASTVLDVIKDE  175 (195)
Q Consensus       118 pdi~~~--sK~l~~G~~~g~v~~~~-~i~~-~l~~~~-~~-----------------~t~~~~p~~~~aa~aal~~~~~~  175 (195)
                      .|.+++  .|.++.-+..|+++.++ .... .+.... +.                 .+.....+.+.+++.++..-.-+
T Consensus       300 aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~  379 (481)
T 4e1o_A          300 ADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQ  379 (481)
T ss_dssp             CSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHH
Confidence            476666  59998545567777664 3332 221110 00                 00011344455555444321225


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++.++..++.+++.+.|++
T Consensus       380 ~~~~~~~~~a~~l~~~L~~  398 (481)
T 4e1o_A          380 AHVRHGTEMAKYFESLVRN  398 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            6778888999999999875

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=98.73  E-value=8.1e-08  Score=81.42  Aligned_cols=137  Identities=13%  Similarity=0.030  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p  118 (195)
                      +++|++.+.+..  .++++|+..   +..|...+    +++|.++|+ ||+++|+|++|+ +|..-.    -... +.-.
T Consensus       116 ~~~l~~~i~~~~--~~tk~v~~~---~~~G~~~~----~~~i~~la~-~~~~vi~D~a~a-~g~~~~----~~~~g~~~~  180 (377)
T 3ju7_A          116 KTVLWDKIEELK--EEVAIVVPY---ATFGSWMN----LEEYEELEK-KGVPVVVDAAPG-FGLMNG----GMHYGQDFS  180 (377)
T ss_dssp             HHHHHHHHHHHG--GGEEEECCB---CGGGBCCC----CHHHHHHHH-TTCCBEEECTTC-TTCEET----TEETTTTCS
T ss_pred             HHHHHHHHhcCC--CCceEEEEE---CCCCCccC----HHHHHHHHh-cCCEEEEECCCc-cCCeEC----CEeccCCCC
Confidence            678888874321  136777732   34566555    889999999 999999999998 442111    0112 1123


Q ss_pred             chhhhc----cccCCCCceEEEEec-HHHHHHhhccc------------cccCCCchHHHHHHHHHHHHhhcchhHHHHH
Q psy13322        119 DIVTMA----KGIANGFPMGAVVTT-TEIAQVLTKAA------------HFNTFGGNPVGCVIASTVLDVIKDEELQYNC  181 (195)
Q Consensus       119 di~~~s----K~l~~G~~~g~v~~~-~~i~~~l~~~~------------~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l  181 (195)
                      |+.++|    |.+++| ..|+++++ +++.+.+....            .+..+..+++.++.+++.++.+  +...++.
T Consensus       181 d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~  257 (377)
T 3ju7_A          181 GMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKER  257 (377)
T ss_dssp             SEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHH
T ss_pred             cEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHH
Confidence            555554    999864 46777765 56666554321            1234556788888787877765  3455666


Q ss_pred             HHHHHHHHHHhhc
Q psy13322        182 KQVSAQIIGYLRV  194 (195)
Q Consensus       182 ~~~~~~l~~~L~~  194 (195)
                      +++.+++.+.|++
T Consensus       258 ~~~~~~~~~~L~~  270 (377)
T 3ju7_A          258 TRISEWYKQLLQS  270 (377)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC
Confidence            6777777776654

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=98.71  E-value=2.9e-08  Score=86.55  Aligned_cols=146  Identities=9%  Similarity=-0.056  Sum_probs=87.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-Cc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-SP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~p  118 (195)
                      ++.|+++|+++.+ +.+++|++.+-+- +|..+.+   |++|.++|++||+++++||+|.+.-.... .+..+.+.+ ..
T Consensus       202 ~e~le~aI~e~ga-~~i~~V~~Ttt~y-~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~~~-~lp~sA~~~GrA  275 (501)
T 3hl2_A          202 LKAVEAKVQELGP-DCILCIHSTTSCF-APRVPDR---LEELAVICANYDIPHIVNNAYGVQSSKCM-HLIQQGARVGRI  275 (501)
T ss_dssp             HHHHHHHHHHHCG-GGEEEEEEECSCC-TTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHHHH-HHHHHHHHHSCC
T ss_pred             HHHHHHHHHhcCC-CcEEEEEecCCCC-CCccccc---HHHHHHHHHHcCCeEEEeCcchhhhhhhh-hhHHHHHhcCCC
Confidence            7899999998754 4788888876443 2333333   99999999999999999999975321111 111111222 47


Q ss_pred             chhhhc--cccCCCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHHHHHHHHHh
Q psy13322        119 DIVTMA--KGIANGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       119 di~~~s--K~l~~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~~~~l~~~L  192 (195)
                      |+++.|  |.+-.-+..+.+.. .+++.+.+... +..+.+++|.  ...+.++..+ .+  .++.++..++.++|++.|
T Consensus       276 D~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~-yPGr~S~Sps--ldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L  352 (501)
T 3hl2_A          276 DAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKM-YPGRASASPS--LDVLITLLSLGSNGYKKLLKERKEMFSYLSNQI  352 (501)
T ss_dssp             CEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHT-SCSCBCSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEecccccceeecCceEEEeCCHHHHHHHHHh-CCCCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888  66531111233434 44666665433 2223333333  2223333323 22  567788888888898888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       353 ~~  354 (501)
T 3hl2_A          353 KK  354 (501)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=98.69  E-value=2e-08  Score=83.69  Aligned_cols=122  Identities=16%  Similarity=0.157  Sum_probs=84.9

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh--hhccccC-CCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV--TMAKGIA-NGF  131 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~--~~sK~l~-~G~  131 (195)
                      ++++|++-...+.+|....+   +++|      ||+++|+||+|+ +|..   .....  ..  |++  +++|.+| .| 
T Consensus       142 ~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~---~~~~~--~~--d~~~~s~~K~~g~~G-  203 (362)
T 2c0r_A          142 NAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR---PFDLN--QF--GLVYAGAQKNLGPSG-  203 (362)
T ss_dssp             TEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS---CCCGG--GC--SEEEEETTTTTCCSS-
T ss_pred             CcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhh-ccCC---ccchh--HC--cEEEEeccccccCcC-
Confidence            67778887777888986332   4444      899999999997 4321   11122  12  655  5579998 56 


Q ss_pred             ceEEEEecHHHHHHhhccc------------cccCCCchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhcC
Q psy13322        132 PMGAVVTTTEIAQVLTKAA------------HFNTFGGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       132 ~~g~v~~~~~i~~~l~~~~------------~~~t~~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~l  195 (195)
                       +|++++++++++.+....            ....++.++.+++++.++|+.+.+    +++.++++++++++.+.|+++
T Consensus       204 -~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  282 (362)
T 2c0r_A          204 -VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQS  282 (362)
T ss_dssp             -CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             -cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence             899999988766554310            122345678889999999987643    567888999999999998753

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=98.68  E-value=4.6e-08  Score=85.18  Aligned_cols=147  Identities=10%  Similarity=-0.053  Sum_probs=85.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-Cc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-SP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~p  118 (195)
                      .+.|+++|+++.+ +.+++|++.|-+...|..-+    |++|.++|++||+++++||+|.+.-+... .+..+.+.. ..
T Consensus       184 ~~~le~aI~~~~~-~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~~-~l~~~a~~~~~A  257 (450)
T 3bc8_A          184 LKAVEAKIQELGP-EHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCM-HLIQQGARVGRI  257 (450)
T ss_dssp             HHHHHHHHHHHCG-GGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHH-HHHHHHHHHSCC
T ss_pred             HHHHHHHHHhcCC-CCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhhH-hHHHHHhcccCC
Confidence            7899999988753 37888888775543345455    99999999999999999999986422111 001011111 45


Q ss_pred             chhhhc--cccCCCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhh
Q psy13322        119 DIVTMA--KGIANGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       119 di~~~s--K~l~~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L~  193 (195)
                      |++++|  |.+..-+..+.+.. .++..+.+.........+.+.+.+.+.+.++  ..+  .++.++..++.+++++.|+
T Consensus       258 D~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~--G~~g~~~~i~~~~~~a~~l~~~l~  335 (450)
T 3bc8_A          258 DAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSL--GCSGYRKLLKERKEMFVYLSTQLK  335 (450)
T ss_dssp             CEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887  77764344566665 4455554433221112222333333333322  211  2344444566677777765


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       336 ~  336 (450)
T 3bc8_A          336 K  336 (450)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=98.67  E-value=1.7e-07  Score=81.92  Aligned_cols=150  Identities=13%  Similarity=-0.001  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-C
Q psy13322         40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-S  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~  117 (195)
                      +++|++.|++....+ ...+|++....++.|.+.+    +++|.++|++||+++++|++|++....+..+ .....++ .
T Consensus       218 ~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~-~~~~~gi~~  292 (475)
T 3k40_A          218 GAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----LDECGPVGNKHNLWIHVDAAYAGSAFICPEY-RHLMKGIES  292 (475)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSGGG-GGGGTTGGG
T ss_pred             HHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhh-HHHhcCccc
Confidence            688888887542111 2455666666667888766    9999999999999999999998642322211 1111233 3


Q ss_pred             cchhhh--ccccCCCCceEEEEecHH-H-HHHhhccc-c------c-------cCC-CchHHHHHHHHHHHHhhcc---h
Q psy13322        118 PDIVTM--AKGIANGFPMGAVVTTTE-I-AQVLTKAA-H------F-------NTF-GGNPVGCVIASTVLDVIKD---E  175 (195)
Q Consensus       118 pdi~~~--sK~l~~G~~~g~v~~~~~-i-~~~l~~~~-~------~-------~t~-~~~p~~~~aa~aal~~~~~---~  175 (195)
                      .|.+++  .|.+++.+.+|++++++. . .+.+.... +      .       .+. .+-++......++|+.+..   +
T Consensus       293 ~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~  372 (475)
T 3k40_A          293 ADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQ  372 (475)
T ss_dssp             CSEEEECHHHHSSCCSSCEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHH
Confidence            476666  498885555777777653 2 22221110 0      0       001 1112223333444444322   5


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++.++..++.+++.+.|++
T Consensus       373 ~~~~~~~~~a~~l~~~L~~  391 (475)
T 3k40_A          373 AHIRRHCNFAKQFGDLCVA  391 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            6778888999999998875

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=98.65  E-value=1.5e-07  Score=82.69  Aligned_cols=145  Identities=14%  Similarity=0.064  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCccc---cCCCccc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN------NGLFISDEVQTGFGR---TGDNYWG  110 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~------~~llI~DEv~~g~gr---~G~~~~~  110 (195)
                      +++|++.+.     .+.++|++....+..|.+.+    +++|.++|++|      |+++++|++|+|+..   .+...+.
T Consensus       192 ~~~l~~~i~-----~~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~  262 (502)
T 3hbx_A          192 PQQAVDMVD-----ENTICVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD  262 (502)
T ss_dssp             HHHHHHHCC-----TTEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS
T ss_pred             HHHHHHHHh-----hCCEEEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccc
Confidence            577777665     25677888877788898877    99999999999      999999999986531   2221111


Q ss_pred             ccccCCCcchhhh--ccccCCCCceEEEEecH-HHH-HHhhccc---------cccCCCchHHHHHHHHHHHHhhcc---
Q psy13322        111 FEMHGVSPDIVTM--AKGIANGFPMGAVVTTT-EIA-QVLTKAA---------HFNTFGGNPVGCVIASTVLDVIKD---  174 (195)
Q Consensus       111 ~~~~~~~pdi~~~--sK~l~~G~~~g~v~~~~-~i~-~~l~~~~---------~~~t~~~~p~~~~aa~aal~~~~~---  174 (195)
                      +.  -...|++++  .|.+.++..+|++++++ +.. +.+....         ....++.+....++..++++.+..   
T Consensus       263 ~~--~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~  340 (502)
T 3hbx_A          263 FR--LPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGY  340 (502)
T ss_dssp             TT--STTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHH
T ss_pred             cC--CCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            11  113466555  37776666788877764 333 2221110         011122222233444455554422   


Q ss_pred             hhHHHHHHHHHHHHHHHhhcC
Q psy13322        175 EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       175 ~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      .+..++..++.++|.+.|+++
T Consensus       341 ~~~~~~~~~~a~~l~~~L~~~  361 (502)
T 3hbx_A          341 RNVMENCRENMIVLREGLEKT  361 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhC
Confidence            456778888889999988753

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=98.65  E-value=1.3e-07  Score=87.06  Aligned_cols=130  Identities=12%  Similarity=-0.019  Sum_probs=77.1

Q ss_pred             EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-ccccCCC--cccc--cccCCC-cc-hh--hhccccC
Q psy13322         58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDN--YWGF--EMHGVS-PD-IV--TMAKGIA  128 (195)
Q Consensus        58 avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~gr~G~~--~~~~--~~~~~~-pd-i~--~~sK~l~  128 (195)
                      .++..|.  .+|.+.+    +++|.++|++||++|++||+|++ +++.+..  ..+.  ..++.. |+ ++  +++|+++
T Consensus       285 viv~~pn--~~G~v~d----l~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~  358 (730)
T 1c4k_A          285 AVIQLGT--YDGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA  358 (730)
T ss_dssp             EEEESBC--TTSEEEC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS
T ss_pred             EEEECCC--CCCeecC----HHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC
Confidence            4444553  4788776    99999999999999999999974 2222110  0011  122332 22 44  5579986


Q ss_pred             CCCc-eEEEEecHHHH---------HHhhccc-cccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHHhhc
Q psy13322        129 NGFP-MGAVVTTTEIA---------QVLTKAA-HFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       129 ~G~~-~g~v~~~~~i~---------~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~l~~~L~~  194 (195)
                      + ++ .|++..+++..         ..+.... ...+.+.++..+++..++++.+..   .++.+++.++.+++++.|++
T Consensus       359 g-~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~  437 (730)
T 1c4k_A          359 G-FSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIK  437 (730)
T ss_dssp             C-CTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            3 33 35554433211         1111111 223345567777777778876643   45678888888889888865

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=98.40  E-value=1.3e-06  Score=75.04  Aligned_cols=129  Identities=14%  Similarity=0.154  Sum_probs=79.2

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-ccccCccccCCCcccccccCCCcchhhhc-cccC----
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISD-EVQTGFGRTGDNYWGFEMHGVSPDIVTMA-KGIA----  128 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~D-Ev~~g~gr~G~~~~~~~~~~~~pdi~~~s-K~l~----  128 (195)
                      ++++|++... +..|.+.+    +++|.++|++||+++|+| +.++ +|....    ...  ...|++++| |.|+    
T Consensus       196 ~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a-~g~~~~----~~~--~g~D~~~~s~kk~~~~~~  263 (438)
T 1wyu_A          196 EVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS-LGVLKP----PGA--YGADIAVGDGQSLGLPMG  263 (438)
T ss_dssp             TEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-GGTBCC----HHH--HTCSEEEEECTTTTCCCG
T ss_pred             CeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-ccCcCC----Ccc--CCCCEEEECCcccCCCcc
Confidence            6788888886 88998876    999999999999999955 2122 332211    111  235777764 6543    


Q ss_pred             -CCCceEEEEecHHHHHHhhccc--------------------------cccCCCc---hHHHHHHHHHHHHhhcc---h
Q psy13322        129 -NGFPMGAVVTTTEIAQVLTKAA--------------------------HFNTFGG---NPVGCVIASTVLDVIKD---E  175 (195)
Q Consensus       129 -~G~~~g~v~~~~~i~~~l~~~~--------------------------~~~t~~~---~p~~~~aa~aal~~~~~---~  175 (195)
                       +|..+|++++++++.+.+....                          ...|...   +.+...++...+..+.+   +
T Consensus       264 ~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~  343 (438)
T 1wyu_A          264 FGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLR  343 (438)
T ss_dssp             GGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHH
Confidence             3557899999988766552210                          0112211   22222222222444422   4


Q ss_pred             hHHHHHHHHHHHHHHHhhcC
Q psy13322        176 ELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~l  195 (195)
                      ++.++++++++++.+.|+++
T Consensus       344 ~~~~~~~~~~~~l~~~L~~~  363 (438)
T 1wyu_A          344 EVALKSVEMAHKLHALLLEV  363 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            56788889999999998753

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=98.27  E-value=2.6e-06  Score=73.25  Aligned_cols=123  Identities=17%  Similarity=0.034  Sum_probs=82.9

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc--hhhhccccC-CCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD--IVTMAKGIA-NGF  131 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd--i~~~sK~l~-~G~  131 (195)
                      ++++|++....+.+|.+..  +.+       +  ++..|.||++-+     . +.+........+  +-+|||.+| .|+
T Consensus       196 ~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~-----~-~~s~~~~~~~~~i~~~S~SK~~g~~G~  258 (427)
T 2hox_A          196 EQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW-----P-HYTPIKYKADEDILLFTMSKFTGHSGS  258 (427)
T ss_dssp             GGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS-----T-TTSCCCSCBCCSEEEEEHHHHTSCGGG
T ss_pred             CceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC-----C-CCCccccCCCceEEEEeChhcCCCCCc
Confidence            4567777777788887665  322       2  556777777632     1 112211111122  337789999 899


Q ss_pred             ceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-----------c--hhHHHHHHHHHHHHHHHhhc
Q psy13322        132 PMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-----------D--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       132 ~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-----------~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++|++++ ++++++.+.......+++.+++++.++.++|+...           +  +..+++++++.++|.+.|++
T Consensus       259 RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  335 (427)
T 2hox_A          259 RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ  335 (427)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999 48888888765444456678888888888887531           1  34668888999999998875

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=97.87  E-value=8.5e-05  Score=64.69  Aligned_cols=141  Identities=17%  Similarity=0.138  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~  117 (195)
                      +.+.++++..+++|+    .||.-.  |..- +.++   +++++++|++.|++|++|=+|. |+.-.|. + ... +.. 
T Consensus       191 Dyd~~~~~A~~~kPk----lIi~G~--SaY~-r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~-~-psP-~~~-  256 (490)
T 3ou5_A          191 DYNQLALTARLFRPR----LIIAGT--SAYA-RLID---YARMREVCDEVKAHLLADMAHISGLVAAKV-I-PSP-FKH-  256 (490)
T ss_dssp             CHHHHHHHHHHHCCS----EEEECC--SSCC-SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTS-S-CCG-GGT-
T ss_pred             cHHHHHHHHhhcCCC----eEEECC--ccCc-cccC---HHHHHHHHhhcccEEEechhhhhhhhcccc-c-CCc-ccc-
Confidence            478999998888664    555544  2222 3333   8999999999999999999995 5533343 2 211 222 


Q ss_pred             cchhhhc--cccCCCCceEEEEecH---------------HHHHHhhccccccCCCchHHHHHHHHHH-HHh-hcc--hh
Q psy13322        118 PDIVTMA--KGIANGFPMGAVVTTT---------------EIAQVLTKAAHFNTFGGNPVGCVIASTV-LDV-IKD--EE  176 (195)
Q Consensus       118 pdi~~~s--K~l~~G~~~g~v~~~~---------------~i~~~l~~~~~~~t~~~~p~~~~aa~aa-l~~-~~~--~~  176 (195)
                      .|++|.+  |+|.| =+.|.+++++               ++.+.+....+..+.+++-+...||+++ +.. +..  .+
T Consensus       257 ADvVTtTTHKTLrG-PrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~  335 (490)
T 3ou5_A          257 ADIVTTTTHKTLRG-ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFRE  335 (490)
T ss_dssp             CSEEEEESSSTTCS-CSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHH
T ss_pred             ceEEeccccccccC-CCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHH
Confidence            5888776  99973 3457788765               4556666655666666655544444433 544 332  34


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy13322        177 LQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       177 ~~~~l~~~~~~l~~~L~~  194 (195)
                      ..+++.+|.+.|.+.|.+
T Consensus       336 Ya~qVv~NAkaLA~~L~~  353 (490)
T 3ou5_A          336 YSLQVLKNARAMADALLE  353 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            556677777777777653

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=97.03  E-value=0.00046  Score=58.62  Aligned_cols=122  Identities=13%  Similarity=0.160  Sum_probs=75.1

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC-CCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA-NGF  131 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~-~G~  131 (195)
                      ++++|.+--.-...|.+.+    +     +|+++|+++++|=+++ +|..   ..-.+.++    ++++|  |.+| .| 
T Consensus       152 ~t~lV~~~h~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~~---~id~~~~~----~~~~s~~K~~gp~G-  213 (377)
T 3e77_A          152 DASYVYYCANETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLSK---PVDVSKFG----VIFAGAQKNVGSAG-  213 (377)
T ss_dssp             TCSCEEEESEETTTTEECS----S-----CCCCTTCCEEEECTTT-TTSS---CCCGGGCS----EEEEEGGGTTSCTT-
T ss_pred             CccEEEEeCccCchheEch----h-----hhccCCCEEEEEcccc-cCCC---CCchhhcC----EEEEecccccCCCc-
Confidence            3444444333334577776    2     4778999999999988 5422   12233333    35555  9997 45 


Q ss_pred             ceEEEEecHHHHHHhhcc-----------ccccCC-CchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhcC
Q psy13322        132 PMGAVVTTTEIAQVLTKA-----------AHFNTF-GGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       132 ~~g~v~~~~~i~~~l~~~-----------~~~~t~-~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~l  195 (195)
                       +|++..++++.+.+...           ....++ ..|..+..+..++|+.+.+    +++.++.+++.++|++.|+++
T Consensus       214 -~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~  292 (377)
T 3e77_A          214 -VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNS  292 (377)
T ss_dssp             -CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             -cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc
Confidence             67777777653322110           011233 3456677777788887743    456788889999999988753

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=97.01  E-value=0.0031  Score=53.11  Aligned_cols=120  Identities=11%  Similarity=0.108  Sum_probs=76.5

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC-CCCc
Q psy13322         56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA-NGFP  132 (195)
Q Consensus        56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~-~G~~  132 (195)
                      +++|.+--.-...|.+.+.         +++ +|+++++|=+++ +|..-   .-.+    ..|++++|  |.+| .|  
T Consensus       141 t~lv~~~~~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~~---id~~----~~d~~~~s~~K~~gp~G--  200 (361)
T 3m5u_A          141 ADYAYICSNNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFSRK---VDFS----NIALFYGGVQKNAGISG--  200 (361)
T ss_dssp             SSEEEEESEETTTTEECSS---------CCC-CSSCEEEECGGG-TTSSC---CCCT----TEEEEEEETTTTSSCTT--
T ss_pred             CCEEEEeCCCCCcceeCCc---------ccc-cCCEEEEEcccc-cCCCC---CCcc----cCCEEEEechhccCCCc--
Confidence            3444443333345776552         333 499999999998 54321   1112    24788786  9997 45  


Q ss_pred             eEEEEecHHHHHHhhc-c---c--------cccCC-CchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhcC
Q psy13322        133 MGAVVTTTEIAQVLTK-A---A--------HFNTF-GGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       133 ~g~v~~~~~i~~~l~~-~---~--------~~~t~-~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      +|++..++++.+.+.. .   .        ...++ ..|..++.+..++++.+.+    ++..++.++..+++++.|+++
T Consensus       201 ~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~  280 (361)
T 3m5u_A          201 LSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLS  280 (361)
T ss_dssp             CEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC
Confidence            7889999988766543 0   0        11222 3456677777888887743    456788889999999988753

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=96.05  E-value=0.007  Score=51.36  Aligned_cols=123  Identities=13%  Similarity=0.101  Sum_probs=71.9

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC-CCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA-NGF  131 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~-~G~  131 (195)
                      ++++|.+--.-...|.+..+   +++|.     +|+++++|=+|+ +|..   ..-.+.++    ++++|  |.+| .| 
T Consensus       166 ~t~lV~~~h~et~tG~~i~p---i~~i~-----~g~~~~vDa~qs-~g~~---pidv~~~~----~~~~s~hK~lGP~G-  228 (386)
T 3qm2_A          166 NAAYLHYCPNETIDGIAIDE---TPDFG-----PEVVVTADFSST-ILSA---PLDVSRYG----VIYAGAQKNIGPAG-  228 (386)
T ss_dssp             TCSCEEECSEETTTTEECCC---CCCCC-----TTCCEEEECTTT-TTSS---CCCGGGCS----EEEEETTTTTCCTT-
T ss_pred             CCcEEEEECCcCCcCEecCc---hhhhc-----CCCEEEEEcccc-cCCC---CCCccccC----EEEEecccccCCCc-
Confidence            44455555555556875333   44442     899999999988 5432   12233333    44555  9996 45 


Q ss_pred             ceEEEEecHHHHHHhhcc----------c-cccCC-CchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhcC
Q psy13322        132 PMGAVVTTTEIAQVLTKA----------A-HFNTF-GGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       132 ~~g~v~~~~~i~~~l~~~----------~-~~~t~-~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~l  195 (195)
                       +|++.+++++.+.+...          . ....+ ..|..++.+..++++.+.+    ++..++.+++.++|++.|+++
T Consensus       229 -~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~  307 (386)
T 3qm2_A          229 -LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS  307 (386)
T ss_dssp             -EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             -cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC
Confidence             78888887763322110          0 11112 2344566677778887643    456678888999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	1e-33
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	1e-33
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	2e-30
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	3e-28
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	7e-20
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	8e-12
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	9e-11
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	7e-06

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score =  121 bits (305), Expect = 1e-33
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 1/145 (0%)

Query: 39  FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ 98
               +   F+ +      AA++ E +QG  G       F++R   L   +  + I+DEVQ
Sbjct: 182 AIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQ 241

Query: 99  TGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGN 158
           +G GRT    +  E  GV+PD+ T AK IA GFP+  V    E+   +       T+ GN
Sbjct: 242 SGAGRT-GTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGN 300

Query: 159 PVGCVIASTVLDVIKDEELQYNCKQ 183
           P+ CV A  VL V + E L      
Sbjct: 301 PIACVAALEVLKVFEQENLLQKAND 325

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 1e-33
 Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA + E IQG +GV      +L    EL   +  LFI+DE+QTG  RT   +   +   V
Sbjct: 190 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART-GRWLAVDYENV 248

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
            PDIV + K ++ G +P+ AV+   +I   +    HF+T+GGNP+GC +A   L+V+++E
Sbjct: 249 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEE 308

Query: 176 ELQYNCKQVSAQIIGYLR 193
            L  N  ++   +   L 
Sbjct: 309 NLAENADKLGIILRNELM 326

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score =  112 bits (281), Expect = 2e-30
 Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
            A I E IQG +GV      +L+  Y++ K  N LF++DEVQTG GRT         + V
Sbjct: 188 CAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT-GKLLCVHHYNV 246

Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVI 164
            PD++ + K ++ G +P+ AV+   +I  V+    H +T+GGNP+   I
Sbjct: 247 KPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASI 295

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score =  106 bits (266), Expect = 3e-28
 Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 1/137 (0%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           AA+I E +QG  GV+     FLR A E+ +    L I DE+QTG GRTG   + FE  G+
Sbjct: 179 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG-KRFAFEHFGI 237

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
            PDI+T+AK +  G P+G  V   E+A+ + K  H  TFGGNP+        +  ++   
Sbjct: 238 VPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTR 297

Query: 177 LQYNCKQVSAQIIGYLR 193
           L     ++    +  LR
Sbjct: 298 LWERAAELGPWFMEKLR 314

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score = 84.1 bits (207), Expect = 7e-20
 Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
           A +I E I G SG       FL    E+   ++ L + DEV TGF          E  GV
Sbjct: 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI--AYGGVQEKFGV 258

Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA---HFNTFGGNPVGCVIASTVLDVIK 173
           +PD+ T+ K I  G P+GA     EI Q++  A       T  GNP+        L++++
Sbjct: 259 TPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLR 318

Query: 174 DEELQYNCKQ 183
                    Q
Sbjct: 319 QPGTYEYLDQ 328

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score = 60.9 bits (146), Expect = 8e-12
 Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 4/187 (2%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGA-AAL 59
                 R   G        I           +  A +   E        +   +G  AA 
Sbjct: 146 ATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAF 205

Query: 60  IAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119
           IAE I    G+ E P  ++       ++   L I DE QTG GRT    +  +  GV+PD
Sbjct: 206 IAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT-GTMFACQRDGVTPD 264

Query: 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHF--NTFGGNPVGCVIASTVLDVIKDEEL 177
           I+T++K +  G P+ A+VT+  I +   +  +    T   +P+   +   VLDV++ + L
Sbjct: 265 ILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGL 324

Query: 178 QYNCKQV 184
                 +
Sbjct: 325 VARANVM 331

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score = 57.7 bits (138), Expect = 9e-11
 Identities = 41/198 (20%), Positives = 75/198 (37%), Gaps = 9/198 (4%)

Query: 1   MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
             PD             +               E     + +L+ A ++ +    AA +I
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEI----AAVII 210

Query: 61  AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
              +QG  G++ +   +L+R  ++      L I+DE+ TGFGRTG  +           +
Sbjct: 211 EPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL 270

Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTVLDVIKDE 175
                       + A +TT E+A+ ++        H  TF GNP+ C  A+  L +++  
Sbjct: 271 CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESG 330

Query: 176 ELQYNCKQVSAQIIGYLR 193
           + Q     +  Q+   L 
Sbjct: 331 DWQQQVADIEVQLREQLA 348

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (101), Expect = 7e-06
 Identities = 17/154 (11%), Positives = 41/154 (26%), Gaps = 17/154 (11%)

Query: 57  AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
             ++A      +G +      L+  Y + K  +   + D  +             E    
Sbjct: 185 PYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW 244

Query: 117 SP-----------DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGC 162
           +            D++ M+       PMG ++   + +                G P   
Sbjct: 245 TIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG 304

Query: 163 VIASTVLD---VIKDEELQYNCKQVSAQIIGYLR 193
            +    ++   V   + +  +        + YL 
Sbjct: 305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLV 338

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	100.0
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	100.0
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	100.0
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	100.0
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	100.0
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.97
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.86
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.84
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.82
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.59
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.58
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.55
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.5
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.49
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.49
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.45
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.44
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.43
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.42
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.4
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.39
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.39
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.38
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.37
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.37
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.35
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.33
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.33
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.33
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.32
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.29
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.29
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.27
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.24
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.24
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.24
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.14
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.13
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.08
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.04
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.01
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	98.98
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	98.98
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	98.76
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	98.72
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	98.7
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	98.69
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	98.67
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	98.64
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	98.57
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	98.53
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	98.48
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	98.39
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	98.36
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	98.32
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	98.31
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	98.3
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	98.26
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	98.26
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	98.17
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	98.06
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	98.02
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	97.96
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	97.94
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	97.94
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	97.85
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	97.85
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	97.83
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	97.83
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	97.79
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	97.72
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	97.71
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	97.48
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	97.42
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	97.4
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	97.39
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	97.29
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	97.1
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	97.03
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	92.77
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	91.08
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	90.62
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	81.94

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-38  Score=270.11  Aligned_cols=151  Identities=34%  Similarity=0.591  Sum_probs=142.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.++.    +++||||+|||+|++|+++++++||++|+++|++||++||+|||++||||+|+ +|+++++|++||
T Consensus       177 ~~~l~~~l~~----~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~-~~a~~~~gv~PD  251 (404)
T d2byla1         177 LPALERALQD----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR-WLAVDYENVRPD  251 (404)
T ss_dssp             HHHHHHHHTS----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTCCCS
T ss_pred             HHHHHHhcCC----CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc-cchhhhcCCCCC
Confidence            6788888863    48999999999999999999999999999999999999999999999999998 889999999999


Q ss_pred             hhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        120 IVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       120 i~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      |+|+||++++| +|+|++++++++++.+....+++||++||++|+|++++|+.++++++.+++++++++|++.|+++
T Consensus       252 i~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l  328 (404)
T d2byla1         252 IVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL  328 (404)
T ss_dssp             EEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTS
T ss_pred             EEEECchhhCCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHHHHHHHHhh
Confidence            99999999988 79999999999999888877999999999999999999999999999999999999999999864

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-37  Score=266.96  Aligned_cols=140  Identities=34%  Similarity=0.565  Sum_probs=134.9

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCce
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPM  133 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~  133 (195)
                      +++||||+|||+|++|+++++++||++|+++|++||++||+|||++||||+|. +|+++++|+.|||+|+||++++|+|+
T Consensus       197 ~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~-~~a~~~~gv~PDi~~~gK~l~gG~P~  275 (425)
T d1sffa_         197 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMGVAPDLTTFAKSIAGGFPL  275 (425)
T ss_dssp             GGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTTSCCSEEEECGGGGTSSCC
T ss_pred             cceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch-hhHHHhcCCCccceecccccCCCcce
Confidence            58999999999999999999999999999999999999999999999999998 78999999999999999999999999


Q ss_pred             EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++++++++++.+....+++||++||++|+|++++|++++++++.+++++.++++++.|++
T Consensus       276 ~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~  336 (425)
T d1sffa_         276 AGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLA  336 (425)
T ss_dssp             EEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Confidence            9999999999988888899999999999999999999999999999999999999998865

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.1e-37  Score=263.43  Aligned_cols=150  Identities=35%  Similarity=0.597  Sum_probs=140.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.|++.++     +++||||+|||+|++|+++++++||++|+++|++||++||+|||++||||+|. ++++++++++||
T Consensus       167 ~~~l~~~~~-----~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~-~~~~~~~~v~PD  240 (387)
T d1vefa1         167 VEALKRAVD-----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK-RFAFEHFGIVPD  240 (387)
T ss_dssp             HHHHHHHCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHTCCCS
T ss_pred             HHHHHHhcC-----CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC-CcccccCCcCCc
Confidence            466766654     48999999999999999999999999999999999999999999999999998 788899999999


Q ss_pred             hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322        120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      |+|+||++++|+|++++++.+++++.+....+++||++||++|+|++++|+.++++++.+++++++++|++.|+++
T Consensus       241 i~~~gK~l~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l  316 (387)
T d1vefa1         241 ILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI  316 (387)
T ss_dssp             EEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTS
T ss_pred             eeeecccCCCCccccccccceeeeeccccCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHhc
Confidence            9999999999999999999999999888888999999999999999999999999999999999999999999864

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=100.00  E-value=2.9e-37  Score=266.55  Aligned_cols=153  Identities=29%  Similarity=0.348  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      .+++.|+++++++.  +++|+||+|||+|++|+++++++||++|+++|++||++||+|||++|| |+|+ +|+++++|+.
T Consensus       184 ~~~~~le~~~~~~~--~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~-~~~~~~~gi~  259 (427)
T d2gsaa_         184 NDLEAVKALFAENP--GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAY-GGVQEKFGVT  259 (427)
T ss_dssp             TCHHHHHHHHTTST--TTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT-TCHHHHTTCC
T ss_pred             chHHHHHHHHHhCC--CCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecc-cchHHhcCCC
Confidence            34788999998763  589999999999999999999999999999999999999999999999 7787 7888999999


Q ss_pred             cchhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       118 pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |||+++||++++|+|++++++++++++.+...   .+++||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus       260 PDi~~~gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~  339 (427)
T d2gsaa_         260 PDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLA  339 (427)
T ss_dssp             CSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhccCCCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999988652   377899999999999999999999999999999999999999875

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=4.8e-37  Score=263.37  Aligned_cols=150  Identities=33%  Similarity=0.582  Sum_probs=138.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.++..+.   + +++||||+|||+|++|.++++++||++|+++|++||++||+|||++||||+|. +|+++++|++||
T Consensus       175 ~~~l~~~~~---~-~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~-~~~~e~~gv~PD  249 (404)
T d1z7da1         175 LEALEEELK---D-PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYNVKPD  249 (404)
T ss_dssp             HHHHHHHHT---S-TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGTCCCS
T ss_pred             HHHHHHHhc---C-CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc-cccccccCCCCC
Confidence            455555543   2 58999999999999999999999999999999999999999999999999998 889999999999


Q ss_pred             hhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       120 i~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+|+||++++| +|+|++++++++++.+....+++||++||++|+|++++|+.+.++++.+++.++++++.+.|++
T Consensus       250 ivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~  325 (404)
T d1z7da1         250 VILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKR  325 (404)
T ss_dssp             EEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcccccCCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHH
Confidence            99999999987 7999999999999988888899999999999999999999998889999999999998887754

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=100.00  E-value=1.3e-35  Score=256.20  Aligned_cols=158  Identities=26%  Similarity=0.401  Sum_probs=142.0

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322         35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH  114 (195)
Q Consensus        35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~  114 (195)
                      ....+++.+...+.+..+ +++||||+|||+|++|.+.++++||++|+++|++||++||+|||+|||||+|. +++++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~-~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~-~~~~~~~  259 (431)
T d1zoda1         182 DYLAELDYAFDLIDRQSS-GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT-MFACQRD  259 (431)
T ss_dssp             CHHHHHHHHHHHHHHHCC-SCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHH
T ss_pred             hhhhhHHHHHHHHHHhcc-ccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc-ccccccC
Confidence            344556777776665544 59999999999999999999999999999999999999999999999999998 7888999


Q ss_pred             CCCcchhhhccccCCCCceEEEEecHHHHHHhhcc--ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322        115 GVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKA--AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       115 ~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~--~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L  192 (195)
                      |++|||+|+||++++|+|++++++++++++.+...  .+++||++||++|+|++++|++++++++.+++.++++++.+.|
T Consensus       260 gv~PDi~~~gK~l~gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l  339 (431)
T d1zoda1         260 GVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGL  339 (431)
T ss_dssp             TCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhccccccccccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhh
Confidence            99999999999999999999999999888776543  3788999999999999999999999999999999999999887


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       340 ~~  341 (431)
T d1zoda1         340 LD  341 (431)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.5e-35  Score=253.62  Aligned_cols=155  Identities=28%  Similarity=0.496  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEcccC-CCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         38 KFYEQLVNAFQYNVPITGAAALIAESIQ-GVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        38 ~~~~~l~~~l~~~~~~~~~aavivEpv~-s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      .+++.+++.+.++.  +++||||+||++ +.+|.++++++||++|+++|++||++||+|||++||||+|+ +|+++++++
T Consensus       189 ~~~~~~~~~~~~~~--~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~~~~~~~v  265 (429)
T d1s0aa_         189 RDMVGFARLMAAHR--HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAEI  265 (429)
T ss_dssp             GGGHHHHHHHHHHT--TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTC
T ss_pred             hhhhhhhhhhhhcC--CccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc-cccccccee
Confidence            34677777777764  599999999997 67788999999999999999999999999999999999998 889999999


Q ss_pred             CcchhhhccccCCC-CceEEEEecHHHHHHhhcc-----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q psy13322        117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIG  190 (195)
Q Consensus       117 ~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~-----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~  190 (195)
                      +|||+|+||++++| +|+|++++++++++.+...     .+++||++||++|+|++++|++++++++.+++++++++|++
T Consensus       266 ~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~  345 (429)
T d1s0aa_         266 APDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLRE  345 (429)
T ss_dssp             CCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHHH
Confidence            99999999999876 7999999999999988653     36889999999999999999999999999999999999999


Q ss_pred             HhhcC
Q psy13322        191 YLRVV  195 (195)
Q Consensus       191 ~L~~l  195 (195)
                      +|+++
T Consensus       346 ~L~~l  350 (429)
T d1s0aa_         346 QLAPA  350 (429)
T ss_dssp             HHGGG
T ss_pred             HHHHh
Confidence            99764

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=5.6e-32  Score=235.33  Aligned_cols=152  Identities=26%  Similarity=0.402  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHhc--CCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322         36 SNKFYEQLVNAFQYN--VPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM  113 (195)
Q Consensus        36 ~~~~~~~l~~~l~~~--~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~  113 (195)
                      ...+++++++++...  .+ +++||||+|||+|++|.++++++||++|+++|++||++||+|||++||||+|+ +|++++
T Consensus       228 ~~~~~~~l~~~~~~~~~~~-~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~-~~~~e~  305 (461)
T d1ohwa_         228 EARCLEEVEDLIVKYRKKK-KTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEH  305 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-CCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSS-SSGGGG
T ss_pred             hhhhHHHHHHHHHHHHhCC-CccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccc-cccccc
Confidence            445566777766432  22 58999999999999999999999999999999999999999999999999998 889999


Q ss_pred             cCC--CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy13322        114 HGV--SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGY  191 (195)
Q Consensus       114 ~~~--~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~  191 (195)
                      +|+  .|||+|+||++++|++.+    ...+ .......+.+||++||++|+|++++|++++++++.+++++++++|.++
T Consensus       306 ~gi~~~PDiv~~gK~l~~g~~~~----~~~~-~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~  380 (461)
T d1ohwa_         306 WGLDDPADVMTFSKKMMTGGFFH----KEEF-RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTG  380 (461)
T ss_dssp             GCCSSCCSEEEECGGGSSEEEEE----CGGG-SCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             cccccCchhhhhhhccccccccc----cccc-ccccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHH
Confidence            988  499999999999774332    2222 111223478999999999999999999999899999999999999999


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       381 l~~  383 (461)
T d1ohwa_         381 LLD  383 (461)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.86  E-value=3.4e-21  Score=163.85  Aligned_cols=146  Identities=18%  Similarity=0.219  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~p  118 (195)
                      .++|+++++...+ .+...|++|+|+||+|++.+    |++|.+||++||++|++||+|+ ||..|+.+.+. +++++.+
T Consensus       163 ~~~l~~l~~~~~~-~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs-~Gv~G~~G~G~~~~~~~~~  236 (396)
T d2bwna1         163 VAHLRELIAADDP-AAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHA-VGMYGPRGAGVAERDGLMH  236 (396)
T ss_dssp             HHHHHHHHHHSCT-TSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSSTTSCCHHHHHTCGG
T ss_pred             HHHhhhHHhhhcc-cCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeecccee-eeeeccccccchhhcCCce
Confidence            5778887776654 36668999999999999999    9999999999999999999998 77776544344 5566644


Q ss_pred             --chh--hhccccC-CCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHH
Q psy13322        119 --DIV--TMAKGIA-NGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQVSAQI  188 (195)
Q Consensus       119 --di~--~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~l  188 (195)
                        ||+  ||||++| .|   |++++++++++++.+..  +.++.+.+|..+++++++++.+..   +.++.+++.+.+++
T Consensus       237 ~~di~~gTlsKa~g~~G---g~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~  313 (396)
T d2bwna1         237 RIDIFNGTLAKAYGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVL  313 (396)
T ss_dssp             GCSEEEEESSSTTCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeeecccccccccc---cccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence              433  8899999 44   79999999999998776  455666789999999999998753   34577888999999


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      ++.|+.
T Consensus       314 ~~~l~~  319 (396)
T d2bwna1         314 KMRLKA  319 (396)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988764

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=6.8e-21  Score=162.21  Aligned_cols=147  Identities=18%  Similarity=0.245  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCCC-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGVS-  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~~-  117 (195)
                      ++.+.+.+....  .+.++|++|+|+||+|+..+    |+++++||++||++||+||+|+ +|+.|..+.+ .+++++. 
T Consensus       164 le~~~~~~~~~~--~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~-~g~~g~~G~G~~~~~~~~~  236 (401)
T d1fc4a_         164 LEARLKEAREAG--ARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHA-VGFVGENGRGSHEYCDVMG  236 (401)
T ss_dssp             HHHHHHHHHHTT--CSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTT-TTTSSTTSCCHHHHTTCTT
T ss_pred             HHHHHHHhhhcc--cCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhc-cccccCCCCccchhccCCC
Confidence            344444444332  46679999999999999998    9999999999999999999999 4455543333 3556664 


Q ss_pred             -cchh--hhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHH
Q psy13322        118 -PDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGY  191 (195)
Q Consensus       118 -pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~  191 (195)
                       +|++  ++||+++ |.++|++.+++++++.+....  +.++.+.+|..++|++++++.+. .++++++++++.++|++.
T Consensus       237 ~~dii~~tl~Ka~g-g~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~  315 (401)
T d1fc4a_         237 RVDIITGTLGKALG-GASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQ  315 (401)
T ss_dssp             CCSEEEEESSSTTC-SSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEeecccccc-cCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhh
Confidence             4544  7899996 455799999999999987664  45566778899999999999875 478899999999999998


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |..
T Consensus       316 l~~  318 (401)
T d1fc4a_         316 MSA  318 (401)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            865

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7.1e-20  Score=154.93  Aligned_cols=146  Identities=17%  Similarity=0.262  Sum_probs=118.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~~p  118 (195)
                      .++|++.|.+..  .+..+|++|+++||+|++.+    |++|.++|++||++||+||+|+ +|..|..+.+ .+++++.+
T Consensus       154 ~~~le~~l~~~~--~~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~-~gv~G~~g~G~~~~~~~~~  226 (383)
T d1bs0a_         154 VTHLARLLASPC--PGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG-TGVIGEQGRGSCWLQKVKP  226 (383)
T ss_dssp             HHHHHHHHHSCC--SSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSSGGGCCHHHHTTCCC
T ss_pred             HHHHHHHhcccC--CCceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeeccee-eeecCCcccchHHHcCCcc
Confidence            688999998764  35678999999999999998    9999999999999999999998 5555543333 36778888


Q ss_pred             chh--hhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHH
Q psy13322        119 DIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQVSAQIIGY  191 (195)
Q Consensus       119 di~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~l~~~  191 (195)
                      +++  ++||+++.  ..|+++++.++++.+++..  +.++.+.+|..+++++++++.++.   +..+++++++..++++.
T Consensus       227 ~~~~~t~~ka~g~--~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~  304 (383)
T d1bs0a_         227 ELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAG  304 (383)
T ss_dssp             SEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccc--cccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            755  57788873  3589999999999997665  556667788899999999988754   45778899999999998


Q ss_pred             hhc
Q psy13322        192 LRV  194 (195)
Q Consensus       192 L~~  194 (195)
                      |++
T Consensus       305 l~~  307 (383)
T d1bs0a_         305 VQD  307 (383)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            875

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.59  E-value=6.3e-15  Score=123.75  Aligned_cols=147  Identities=16%  Similarity=0.136  Sum_probs=109.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc-
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP-  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p-  118 (195)
                      +++|++.+.     .+.+++++-...+.+|. +++.+.+++|.++|++||++||+||+|..+.+.+..+.+...  ..+ 
T Consensus       153 ~~~l~~~~~-----~~~~~~~~~~P~NPTG~-~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~--~~~~  224 (388)
T d1j32a_         153 PEQIRQAIT-----PKTKLLVFNTPSNPTGM-VYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGA--ASPE  224 (388)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG--SCHH
T ss_pred             HHHHHHhCC-----CCCeEEEECCCCCCCCc-ccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHH--hCcc
Confidence            566666554     25555665555788885 578899999999999999999999999888766543322221  222 


Q ss_pred             ---c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Q psy13322        119 ---D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQII  189 (195)
Q Consensus       119 ---d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~  189 (195)
                         .   +.++||.++ .|+|+||+++++++++.+.........+.++.++.++...++..++  +++++.++++.+.+.
T Consensus       225 ~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (388)
T d1j32a_         225 AYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYML  304 (388)
T ss_dssp             HHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeEecCChhhhhcchhHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Confidence               1   336799999 8999999999999988876655445566678888888888875533  567788899999999


Q ss_pred             HHhhc
Q psy13322        190 GYLRV  194 (195)
Q Consensus       190 ~~L~~  194 (195)
                      +.|++
T Consensus       305 ~~l~~  309 (388)
T d1j32a_         305 DALNA  309 (388)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88865

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.58  E-value=1.6e-14  Score=120.59  Aligned_cols=149  Identities=17%  Similarity=0.176  Sum_probs=106.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC-CCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG-VSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~-~~p  118 (195)
                      +++|++.+.     ++++++++-...+.+|. +++.+.+++|.++|++||++||.||+|..+...+..+.+..... ..+
T Consensus       149 ~~~l~~~~~-----~~~~~i~~~~P~NPtG~-~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~  222 (388)
T d1gdea_         149 VDELKKYVT-----DKTRALIINSPCNPTGA-VLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFE  222 (388)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGG
T ss_pred             HHHHHHhCc-----cCCeEEEECCCcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCC
Confidence            566776654     35666777666778885 57789999999999999999999999998866554333333332 222


Q ss_pred             chh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHH
Q psy13322        119 DIV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIG  190 (195)
Q Consensus       119 di~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~  190 (195)
                      .++   +|||.++ .|+++||+++++++.+.+.......+.+.+.+.+.++.++++....    ......++++...+.+
T Consensus       223 ~~i~~~S~SK~~~~~GlR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  302 (388)
T d1gdea_         223 RTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWK  302 (388)
T ss_dssp             GEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCChhhccCccccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhh
Confidence            333   6799999 8999999999999888877665555666677777777777753211    3455666777777777


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|+.
T Consensus       303 ~l~~  306 (388)
T d1gdea_         303 RLNE  306 (388)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            6653

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=1.8e-14  Score=120.39  Aligned_cols=147  Identities=16%  Similarity=0.200  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     .+++++++-..++.+|. +++.+.+++|.++|++||++||.||+|..+.+.|. ....... ....
T Consensus       154 ~~~l~~~~~-----~~~~~i~~~~P~NPTG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~-~~~~  225 (382)
T d1b5pa_         154 PERVRRAIT-----PRTKALVVNSPNNPTGA-VYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE-HFSPGRV-APEH  225 (382)
T ss_dssp             HHHHHTTCC-----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGGGT-CTTT
T ss_pred             HHHHHHhCC-----CCCeEEEECCCCCCcch-hCCHHHHHHHHHHHHHcCeEEEEEccccceecCCC-CCCHHHc-CCCC
Confidence            455555432     35666666666888995 67889999999999999999999999999877776 3222111 1122


Q ss_pred             ---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh---cc--hhHHHHHHHHHHHHHH
Q psy13322        120 ---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI---KD--EELQYNCKQVSAQIIG  190 (195)
Q Consensus       120 ---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~---~~--~~~~~~l~~~~~~l~~  190 (195)
                         +.++||.++ .|||+||+++++++++.+.......+.+.+.+.+.++.+++...   +.  +..++.++++.+.+.+
T Consensus       226 ~i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (382)
T d1b5pa_         226 TLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLE  305 (382)
T ss_dssp             EEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecchhhccCcHhheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHH
Confidence               336689999 89999999999998887766544445555666655555555422   11  3455667777777777


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .++.
T Consensus       306 ~l~~  309 (382)
T d1b5pa_         306 GLTA  309 (382)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            6653

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.2e-13  Score=114.13  Aligned_cols=140  Identities=16%  Similarity=0.183  Sum_probs=106.1

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCcc---hhhhccccC-
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSPD---IVTMAKGIA-  128 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~pd---i~~~sK~l~-  128 (195)
                      ..++++++-...+.+|. +.+.+.+++|.++|++|++++|.||+|..+.+.+....+...+ +..+.   +.++||.++ 
T Consensus       170 ~~~~~i~~~~p~NPtG~-~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  248 (418)
T d1w7la_         170 SRTKALVLNTPNNPLGK-VFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSA  248 (418)
T ss_dssp             TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTC
T ss_pred             ccccceeccCcCCcccc-cccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccC
Confidence            36677777667778885 6678899999999999999999999999987776533333332 33333   336689998 


Q ss_pred             CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-------c--hhHHHHHHHHHHHHHHHhhc
Q psy13322        129 NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-------D--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       129 ~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-------~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .|+|+||+++++++++.+.......+++.+.+++.++.++|....       +  ..+++.++++++.|.+.|++
T Consensus       249 pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  323 (418)
T d1w7la_         249 TGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQS  323 (418)
T ss_dssp             GGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhh
Confidence            899999999999998888776555667777888888777775421       1  35677888899999888875

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.49  E-value=4.9e-14  Score=120.60  Aligned_cols=154  Identities=17%  Similarity=0.109  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC------ccccCCCccccc
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG------FGRTGDNYWGFE  112 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g------~gr~G~~~~~~~  112 (195)
                      ++++|+++|++..+ +.++++++|++++.+|..+++.++|++|+++|++||++||+||+|..      .++.+. +++..
T Consensus       167 d~~~l~~~i~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~-~~~~~  244 (465)
T d1ax4a_         167 DIKKLKENIAQHGA-DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPK-YKNAT  244 (465)
T ss_dssp             CHHHHHHHHHHHCG-GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGG-GTTCC
T ss_pred             CHHHHHHHHHhhcc-ccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhccccccccc-ccccc
Confidence            37889999987754 48999999999999999999999999999999999999999999972      223332 23333


Q ss_pred             ccCCCc------chhhhccccC-CCCceEEEEecHH--HHHHhhcc----ccccCCCc-hHHHHHHHHHHHHhhcchhHH
Q psy13322        113 MHGVSP------DIVTMAKGIA-NGFPMGAVVTTTE--IAQVLTKA----AHFNTFGG-NPVGCVIASTVLDVIKDEELQ  178 (195)
Q Consensus       113 ~~~~~p------di~~~sK~l~-~G~~~g~v~~~~~--i~~~l~~~----~~~~t~~~-~p~~~~aa~aal~~~~~~~~~  178 (195)
                      ..++.+      |++++||..+ +++..|+++++++  +.......    ....++++ ...+.+++...+.....++..
T Consensus       245 ~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~  324 (465)
T d1ax4a_         245 IKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYL  324 (465)
T ss_dssp             HHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhhccccccccceeEeecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHH
Confidence            233344      4557777766 3456677777653  33322211    12333333 334444444444444456677


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++..++.++|.+.|++
T Consensus       325 ~~~~~~~~~l~~~L~~  340 (465)
T d1ax4a_         325 HYRIGQVKYLGDRLRE  340 (465)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7777888899988875

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.49  E-value=3.1e-13  Score=114.16  Aligned_cols=140  Identities=13%  Similarity=0.052  Sum_probs=103.5

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCcchh---hhccccC-
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSPDIV---TMAKGIA-  128 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~pdi~---~~sK~l~-  128 (195)
                      .+++++++-+..+.+|. +++++.+++|.++|++||++||.||+|..+.+.+....+.... +..+.++   ++||.++ 
T Consensus       170 ~~~~~~~i~~p~NPtG~-~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~  248 (418)
T d2r5ea1         170 EKTKMIIINTPHNPLGK-VMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSL  248 (418)
T ss_dssp             TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTC
T ss_pred             ccccceecCCcCccccc-cccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccC
Confidence            47778888777888886 6688999999999999999999999999876555322222222 3333333   6789999 


Q ss_pred             CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh-------cc--hhHHHHHHHHHHHHHHHhhc
Q psy13322        129 NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI-------KD--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       129 ~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~-------~~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .|+++||+++++++++.+.......+++.++..+.++.+.+...       ++  ..++++++++++++.+.|++
T Consensus       249 pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  323 (418)
T d2r5ea1         249 TGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE  323 (418)
T ss_dssp             GGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhh
Confidence            89999999999999888876655556666666666666555421       11  45678888899999998875

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.45  E-value=4.4e-13  Score=110.57  Aligned_cols=136  Identities=15%  Similarity=0.119  Sum_probs=99.2

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G  130 (195)
                      ++.+|++....+.+|. ..+.+++++|.++|++|++++|.||+|..|...+....  ......+.   +.++||+++ .|
T Consensus       144 ~~~~v~l~nP~NPtG~-~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~--~~~~~~~~~i~~~S~SK~~~l~G  220 (355)
T d1lc5a_         144 DLDCLFLCTPNNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFI--PALKDNPHIWVLRSLTKFYAIPG  220 (355)
T ss_dssp             TCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSG--GGCTTCTTEEEEEESTTTTTCTT
T ss_pred             ccceeeeecccCcccc-cchhhhhhhhhhhccccccccccccceeeeeeeccccc--ccccccccceeeccccccccccc
Confidence            5666777777888997 55789999999999999999999999998766554221  11122233   337799999 99


Q ss_pred             CceEEEEecHH-HHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhcC
Q psy13322        131 FPMGAVVTTTE-IAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       131 ~~~g~v~~~~~-i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~l  195 (195)
                      +|+||++++++ +.+.+..  ...+++.+.+++.++.++|+.... .+.+++++++.+++.+.|+++
T Consensus       221 lR~G~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  285 (355)
T d1lc5a_         221 LRLGYLVNSDDAAMARMRR--QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL  285 (355)
T ss_dssp             TCCEEEECCCHHHHHHHHH--HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ccccceeccchhhhHHHHh--hcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999865 4454443  234466788889988888875322 456677888888888888753

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.44  E-value=4.8e-14  Score=117.64  Aligned_cols=124  Identities=12%  Similarity=0.065  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+.     .++++|+++...++.   ..+.+.|++|+++|++||+++|+||+|....+.+.........+  .|
T Consensus       123 ~e~l~~~i~-----~~tk~i~~~~p~n~~---~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~--~d  192 (366)
T d2aeua1         123 VGEILNKID-----KDTLVIITGSTMDLK---VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLG--AD  192 (366)
T ss_dssp             HHHHHTTCC-----TTEEEEEECBCTTSC---BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHT--CS
T ss_pred             HHHHHHhcC-----CCceEEEEEecCCCC---cCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcC--ce
Confidence            455555443     478899998776643   33556699999999999999999999973322211111111223  45


Q ss_pred             hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc
Q psy13322        120 IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK  173 (195)
Q Consensus       120 i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~  173 (195)
                      ++++||+.+ +||++|++++++++++.+.......+++.+|+.+.+++++|+.+.
T Consensus       193 i~~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~  247 (366)
T d2aeua1         193 LVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFN  247 (366)
T ss_dssp             EEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC
T ss_pred             EEEecccccccccceeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcc
Confidence            665654444 579999999999999998876655666678888888888887653

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.43  E-value=1.7e-12  Score=108.71  Aligned_cols=139  Identities=16%  Similarity=0.107  Sum_probs=97.1

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC---CCcchhhhccccCCCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG---VSPDIVTMAKGIANGF  131 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~---~~pdi~~~sK~l~~G~  131 (195)
                      ...++++-...+.+|. +.+.+.+++|.++|++||++||+||+|..+.+.|....+....+   ...-+.++||.++.|+
T Consensus       171 ~~~~~~~~~p~NPtG~-~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~  249 (403)
T d1wsta1         171 VKIVYTVSTFQNPAGV-TMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPGF  249 (403)
T ss_dssp             CCEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGGG
T ss_pred             ccccccccccCCCCCc-cCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceecCcc
Confidence            4545555556667785 66788899999999999999999999998877765332332222   1112347799998899


Q ss_pred             ceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhc
Q psy13322        132 PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       132 ~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++||+++++++++.+.......+.+.++..+.+..+.+.....    ..+++.++++.+.+.+.|++
T Consensus       250 RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  316 (403)
T d1wsta1         250 RIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEE  316 (403)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999888776654444555666666666555554322    45666777777777777653

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=7.5e-13  Score=110.34  Aligned_cols=138  Identities=13%  Similarity=0.148  Sum_probs=99.5

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc--hhhhccccC-CC
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD--IVTMAKGIA-NG  130 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd--i~~~sK~l~-~G  130 (195)
                      ++++++++-...+.+|.. .+.+.+++|.++|++||++||.||+|..+.+.+. ..+.........  +..+||.++ .|
T Consensus       158 ~~~~~~~l~nP~NPtG~~-~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~-~~~~~~~~~~~~~v~~s~sK~~~~~G  235 (389)
T d2gb3a1         158 ERTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASALSIESDKVVVIDSVSKKFSACG  235 (389)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCGGGSCCTTEEEEEESTTTTTCGG
T ss_pred             cCccEEEeCCCCcccccc-chHHHHHHHHhhcccCCEEEEEeccccccccccc-cccccccccccccccccccccccCcc
Confidence            477788887778888964 5889999999999999999999999998877665 222222111212  225579998 89


Q ss_pred             CceEEEEecHH-HHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTE-IAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~-i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ||+||++++.+ +...+... ....++.+++.+.++.+.++..+.  +++++.++++++.+.+.|++
T Consensus       236 lRiG~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  301 (389)
T d2gb3a1         236 ARVGCLITRNEELISHAMKL-AQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE  301 (389)
T ss_dssp             GCCEEEECSCHHHHHHHHHH-HHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeeeeccchhHHHHHhhh-hhccccccccccccccccccccchhcccccccccccchhhhhhhhh
Confidence            99999999765 44433332 334456677778777777764432  56778899999999999875

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.40  E-value=6.1e-13  Score=111.67  Aligned_cols=149  Identities=13%  Similarity=0.069  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     ++..+|++-...+.+|. +++.+.+++|.++|++|++++|.||+|..+.+.+. ........-...
T Consensus       156 ~~~~~~~~~-----~~~~~v~l~~P~NPTG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~  228 (395)
T d1xi9a_         156 IDDIRKKIT-----DRTKAIAVINPNNPTGA-LYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE-HISPGSLTKDVP  228 (395)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC-CCCHHHHCSSSC
T ss_pred             HHHHHHhhc-----ccccEEEecCCCCCccc-hhhHHHHHHHHhhhhhcCeeEEecccccccccccc-ccchhhcCCCCC
Confidence            455555443     35556666666788895 66889999999999999999999999998766554 222221111223


Q ss_pred             hh---hhccccC-CCCceEEEEec--HHHHHHhhc---cccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322        120 IV---TMAKGIA-NGFPMGAVVTT--TEIAQVLTK---AAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI  188 (195)
Q Consensus       120 i~---~~sK~l~-~G~~~g~v~~~--~~i~~~l~~---~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l  188 (195)
                      ++   +|||+++ .||++||+++.  ......+..   .....+.+.+.+++.++..+++..++  ++.++.++++++.+
T Consensus       229 vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l  308 (395)
T d1xi9a_         229 VIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYI  308 (395)
T ss_dssp             EEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            33   6799999 89999987653  222222211   11223445566778888888875432  56778889999999


Q ss_pred             HHHhhcC
Q psy13322        189 IGYLRVV  195 (195)
Q Consensus       189 ~~~L~~l  195 (195)
                      .+.|+++
T Consensus       309 ~~~L~~~  315 (395)
T d1xi9a_         309 YKRLNEI  315 (395)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHhC
Confidence            9998753

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.39  E-value=2.2e-12  Score=108.89  Aligned_cols=152  Identities=14%  Similarity=0.149  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc------cc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF------EM  113 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~------~~  113 (195)
                      .+.++..+....  .+..++++.+.++.+|. +++.+.+++|.++|++|++++|+||+|.+|.+.+....+.      ..
T Consensus       163 ~~~~~~~~~~~~--~~~~~i~i~~P~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~  239 (412)
T d1yaaa_         163 LNGFLNAIQKAP--EGSIFVLHSCAHNPTGL-DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK  239 (412)
T ss_dssp             HHHHHHHHHHSC--TTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH
T ss_pred             chhhhcccccCC--CceEEEEecCCCCCccc-cCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhc
Confidence            455666666543  36667888888899995 6688999999999999999999999999997765311111      11


Q ss_pred             cCCCcchh---hhccccC-CCCceEEEEecHHHH-------HHhh----ccccccCCCchHHHHHHHHHHHHhh------
Q psy13322        114 HGVSPDIV---TMAKGIA-NGFPMGAVVTTTEIA-------QVLT----KAAHFNTFGGNPVGCVIASTVLDVI------  172 (195)
Q Consensus       114 ~~~~pdi~---~~sK~l~-~G~~~g~v~~~~~i~-------~~l~----~~~~~~t~~~~p~~~~aa~aal~~~------  172 (195)
                      .+..+.++   .+||.++ .|||+||++++.++.       +.+.    ........+.+.+++.++..+++.-      
T Consensus       240 ~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~  319 (412)
T d1yaaa_         240 LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQW  319 (412)
T ss_dssp             TTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHH
T ss_pred             cccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHH
Confidence            12233322   5689999 899999999875432       1111    1123344566778888877776532      


Q ss_pred             c--chhHHHHHHHHHHHHHHHhhc
Q psy13322        173 K--DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       173 ~--~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .  -+.++++++++++.|.+.|++
T Consensus       320 ~~~~~~~~~~~~~~r~~l~~~L~~  343 (412)
T d1yaaa_         320 HKDMVTMSSRITKMRHALRDHLVK  343 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  145667788888888888764

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.39  E-value=3.5e-12  Score=107.98  Aligned_cols=138  Identities=13%  Similarity=0.202  Sum_probs=91.0

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cC------CCcc----hhh
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HG------VSPD----IVT  122 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~------~~pd----i~~  122 (195)
                      .++.+|++-...+.+|. +++.+.+++|.++|++||++||+||+|..+.+.+..+.++.. .+      ..++    +-+
T Consensus       187 ~~~~~~~l~nP~NPtG~-~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s  265 (428)
T d1iaya_         187 IKVKGLILTNPSNPLGT-TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYS  265 (428)
T ss_dssp             CCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEE
T ss_pred             CCceEEEEccCCCcccc-cccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEec
Confidence            46777777777788884 667888999999999999999999999988776653333311 11      1122    236


Q ss_pred             hccccC-CCCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHH---hhcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322        123 MAKGIA-NGFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLD---VIKD--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       123 ~sK~l~-~G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~---~~~~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      +||.++ +|+++|++++. +.+.+.+........  .+...+.++.+.+.   .+++  .+.+++++++++.+.+.|+.
T Consensus       266 ~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~  342 (428)
T d1iaya_         266 LSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGL--VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV  342 (428)
T ss_dssp             STTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCCCcccccccccccchhhhhhhhhcccc--cccccccchhhhhhhhccccccccccccccchhHHHHHHHHHh
Confidence            689998 89999999985 567776654432222  23333333333332   2222  44566778888888888764

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=6.3e-13  Score=113.82  Aligned_cols=154  Identities=12%  Similarity=0.020  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-c--cccCCCcccccccC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-F--GRTGDNYWGFEMHG  115 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~--gr~G~~~~~~~~~~  115 (195)
                      ++++|++.+....+ ..+++|++|++++++|..+++.++|++|+++|++||++||+|++|.. .  +..+. ..++...+
T Consensus       168 d~~~l~~~i~~~~~-~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~-~~~~~~~~  245 (467)
T d2v1pa1         168 DLEGLERGIEEVGP-NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQR-EAEYKDWT  245 (467)
T ss_dssp             CHHHHHHHHHHHCG-GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHH-CGGGTTSC
T ss_pred             CHHHHHHHHhhcCc-cccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccc-cccccCCc
Confidence            47899999987755 47899999999999988999999999999999999999999999962 1  11111 11222111


Q ss_pred             ---------CCcchhhhccccCC-CCceEEEEecHH-HHHHh---hc----cccccCCCch-HHHHHHHHHHHHhhcchh
Q psy13322        116 ---------VSPDIVTMAKGIAN-GFPMGAVVTTTE-IAQVL---TK----AAHFNTFGGN-PVGCVIASTVLDVIKDEE  176 (195)
Q Consensus       116 ---------~~pdi~~~sK~l~~-G~~~g~v~~~~~-i~~~l---~~----~~~~~t~~~~-p~~~~aa~aal~~~~~~~  176 (195)
                               -..|++++|+..+. |...|+++++++ +....   ..    .....++++. ..++++....+.....++
T Consensus       246 ~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  325 (467)
T d2v1pa1         246 IEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLD  325 (467)
T ss_dssp             HHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHH
Confidence                     13456666644442 233456666553 22222   11    1233344443 444444445555555677


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy13322        177 LQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       177 ~~~~l~~~~~~l~~~L~~  194 (195)
                      ..++..++.++|.++|++
T Consensus       326 ~~~~~~~~~~~l~~~L~~  343 (467)
T d2v1pa1         326 WLAYRIAQVQYLVDGLEE  343 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            888888999999998875

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.37  E-value=1e-12  Score=108.69  Aligned_cols=148  Identities=18%  Similarity=0.207  Sum_probs=103.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc--CCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH--GVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~--~~~  117 (195)
                      .+.|++.+.     .....|++-...+.+|. .++.+.+++|.++|++||+++|.||++..+..... .......  ...
T Consensus       142 ~~~l~~~~~-----~~~~~i~~~~p~NPtG~-~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~-~~~~~~~~~~~~  214 (368)
T d1v2da_         142 LSALEKALT-----PRTRALLLNTPMNPTGL-VFGERELEAIARLARAHDLFLISDEVYDELYYGER-PRRLREFAPERT  214 (368)
T ss_dssp             HHHHHTTCC-----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCHHHHCTTTE
T ss_pred             HHHHHHhhc-----cCceEEEEcCCCCcccc-cCCHHHHHHHHHHHHHcCCeeeechhhhhhccccc-cccccccccccc
Confidence            455555544     24555666556788895 66788999999999999999999999986543332 1111111  111


Q ss_pred             cchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHh
Q psy13322        118 PDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       118 pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L  192 (195)
                      -.+.++||.++ .|+++|++++++++.+.+.......+.+.++..+.++.++++....    +.+++.++++.+++.+.|
T Consensus       215 ~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l  294 (368)
T d1v2da_         215 FTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGL  294 (368)
T ss_dssp             EEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeecccccccccccccccccccccccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhH
Confidence            12457788888 7999999999999888777665555666777777777777765432    456677888889999888


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       295 ~~  296 (368)
T d1v2da_         295 RA  296 (368)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.37  E-value=2.3e-12  Score=109.28  Aligned_cols=139  Identities=15%  Similarity=0.171  Sum_probs=91.1

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc----C------CCcchh--
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH----G------VSPDIV--  121 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~----~------~~pdi~--  121 (195)
                      .++.++++-...+.+|. +++.+.+++|.++|++||++||+||+|..+.+.+..+.++...    .      ....++  
T Consensus       188 ~~~~~i~~~nP~NPtG~-~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~  266 (431)
T d1m7ya_         188 LRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVV  266 (431)
T ss_dssp             CCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEE
T ss_pred             CcceEEEecCccccccc-cccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEE
Confidence            36777877777788885 6678999999999999999999999999886666533333111    1      111223  


Q ss_pred             -hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHH---hhcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322        122 -TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLD---VIKD--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       122 -~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~---~~~~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                       ++||.++ +|+++|++++++++........... ...++..+.++.+.+.   ..++  .+.+.+++++.+.+.+.|++
T Consensus       267 ~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  345 (431)
T d1m7ya_         267 YSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF-GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK  345 (431)
T ss_dssp             EESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGG-SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCcccccCCCCccceeccchhhhHHHHHHHhcc-ccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence             6799999 8999999999887554333322222 2223333333333332   2222  45667788888888888864

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.35  E-value=3.8e-12  Score=107.12  Aligned_cols=152  Identities=8%  Similarity=0.080  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCc--ccc-cccCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY--WGF-EMHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~--~~~-~~~~~  116 (195)
                      ++.+++.+....  ++..++++-+..+.+| .+++.+.+++|.++|++||+++|+||+|.++.+.+...  ++. .....
T Consensus       170 ~~~~~~~~~~~~--~~~~~il~~~P~NPTG-~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~  246 (412)
T d1ajsa_         170 LQGFLSDLENAP--EFSIFVLHACAHNPTG-TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSE  246 (412)
T ss_dssp             HHHHHHHHHHSC--TTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred             HHHHHHHHHhcc--CCcEEEEecCCCCCcC-CCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhh
Confidence            455555555443  3667788888888899 57789999999999999999999999999987665311  111 11111


Q ss_pred             Cc-c--hhhhccccC-CCCceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHh------hcc--hhH
Q psy13322        117 SP-D--IVTMAKGIA-NGFPMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDV------IKD--EEL  177 (195)
Q Consensus       117 ~p-d--i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~------~~~--~~~  177 (195)
                      .+ .  +.++||.++ .||++|+++++....+.+..       .......+.+.+++.++.+.+..      ..+  +.+
T Consensus       247 ~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (412)
T d1ajsa_         247 GFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTM  326 (412)
T ss_dssp             TCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            11 2  235689999 89999999997543333221       11223334456666666655542      111  356


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      +++++++++.|.+.|++
T Consensus       327 ~~~l~~~r~~l~~~L~~  343 (412)
T d1ajsa_         327 ADRILSMRSELRARLEA  343 (412)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            67788888888888865

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=7.2e-12  Score=105.47  Aligned_cols=138  Identities=13%  Similarity=0.170  Sum_probs=97.4

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc-h---hhhccccCCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD-I---VTMAKGIANG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd-i---~~~sK~l~~G  130 (195)
                      ..+.+++-+..+.+|. .++.+.+++|.++|++|++++|+||+|..+.+.+.......... .++ +   .++||.++.|
T Consensus       183 ~~~~~~~~~p~NPtG~-~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~-~~~~~i~~~s~sk~~~~G  260 (420)
T d1vp4a_         183 VKFIYVVSNFHNPAGV-TTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-GPERVVLLNTFSKVLAPG  260 (420)
T ss_dssp             EEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-CTTTEEEEEESTTTTCGG
T ss_pred             cceeeEecCCCCccch-hhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccc-cccceeEEeccccccccc
Confidence            3445556556677785 57889999999999999999999999998877665222222111 222 2   2446777789


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--c--hhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--D--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++||+++++++++.+.+.....+.+.+.+.++++...++...  +  .+.++.++++.+.+.+.|++
T Consensus       261 ~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  328 (420)
T d1vp4a_         261 LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEE  328 (420)
T ss_dssp             GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhh
Confidence            9999999999999988776555555667777777777665432  1  45667777777777777753

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.33  E-value=6.7e-12  Score=105.39  Aligned_cols=139  Identities=14%  Similarity=0.151  Sum_probs=90.3

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc-ccC-C--Ccchh---hhccc
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE-MHG-V--SPDIV---TMAKG  126 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~-~~~-~--~pdi~---~~sK~  126 (195)
                      .+.+++++-...+.+|. +++.+.+++|.++|++|+++||+||+|.++.+.|....... ... .  ...++   ++||+
T Consensus       173 ~~~~~~~l~np~NPtG~-~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~  251 (412)
T d1bw0a_         173 DKTKLLIVTNPSNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKN  251 (412)
T ss_dssp             TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTT
T ss_pred             ccccccccccccccccc-cchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCcc
Confidence            36667777777778885 55789999999999999999999999999977764222221 111 1  11122   46899


Q ss_pred             cC-CCCceEEEEecHH------HHHHhhccccccCCCchHHHHHHHHHHH-Hhhcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322        127 IA-NGFPMGAVVTTTE------IAQVLTKAAHFNTFGGNPVGCVIASTVL-DVIKD--EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       127 l~-~G~~~g~v~~~~~------i~~~l~~~~~~~t~~~~p~~~~aa~aal-~~~~~--~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ++ .|||+||+++++.      ++...... ...+.+.++..++++.+.+ +..++  .+++++++++++++.+.|.+
T Consensus       252 ~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~  328 (412)
T d1bw0a_         252 LVVPGWRLGWLLYVDPHGNGPSFLEGLKRV-GMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE  328 (412)
T ss_dssp             TSCGGGCCEEEEEECTTCSCHHHHHHHHHH-HHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CccCCCCcccccccchhhcchhhhhhhccc-cccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHH
Confidence            99 8999999998642      22222221 2223333444444444433 32222  46778888999999988864

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.33  E-value=6.9e-12  Score=104.90  Aligned_cols=138  Identities=12%  Similarity=0.129  Sum_probs=91.7

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc--CCCcc---hhhhccccC-
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH--GVSPD---IVTMAKGIA-  128 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~--~~~pd---i~~~sK~l~-  128 (195)
                      +++++++-...+.+|. +++.+.+++|.++|++|+++||+||+|..+-+.+..+......  +....   +.++||+++ 
T Consensus       164 ~~~~i~l~~P~NPTG~-v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~  242 (394)
T d1c7na_         164 NNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNI  242 (394)
T ss_dssp             TEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTC
T ss_pred             cceEEEecccccccce-eccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccc
Confidence            6778888888888995 6688999999999999999999999999886666422222111  11111   235689999 


Q ss_pred             CCCceEEEEecH-HHHHHhhccccccCC-CchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhh
Q psy13322        129 NGFPMGAVVTTT-EIAQVLTKAAHFNTF-GGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       129 ~G~~~g~v~~~~-~i~~~l~~~~~~~t~-~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L~  193 (195)
                      +||++|++++++ .+.+.+.......+. ..+....+++....+...+  +++.+.++++.+.+.+.|+
T Consensus       243 ~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  311 (394)
T d1c7na_         243 AGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFE  311 (394)
T ss_dssp             GGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhh
Confidence            899999888765 566665544322222 2234444555444444332  4566777777777777664

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=1.2e-11  Score=102.38  Aligned_cols=138  Identities=22%  Similarity=0.227  Sum_probs=95.8

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G  130 (195)
                      +.+++++-...+.+|. .++.+.+++|.++|++|+++||.||+|..+...+.........+..+.   +.++||.++ .|
T Consensus       161 ~~~~~~l~nP~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G  239 (375)
T d1o4sa_         161 KTKAVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG  239 (375)
T ss_dssp             TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG
T ss_pred             CccEEEEeCCCCCccC-CCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCc
Confidence            5656666666888996 557899999999999999999999999977554432211122222223   346799999 89


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ||+||+++++++++.+.......+...+...+.++...++.. .....+.++++.+.+.+.|++
T Consensus       240 ~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~l~~  302 (375)
T d1o4sa_         240 WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKK  302 (375)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhccccccccccchhhhhhhcccc-hhhhHHHHHHHHHHHHHHHHh
Confidence            999999999998887765544444444555555554444432 245667788888888888865

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2.6e-11  Score=99.89  Aligned_cols=148  Identities=11%  Similarity=0.015  Sum_probs=95.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.+    .++++|++-...+.+|. .++.+.+++|.++|++||++||+||+|.++.+.+.....+.... ..+
T Consensus       122 ~~~~~~~~~~----~~~~~i~l~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~  195 (361)
T d1d2fa_         122 MGKLEAVLAK----PECKIMLLCSPQNPTGK-VWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA-RGD  195 (361)
T ss_dssp             HHHHHHHHTS----TTEEEEEEESSCTTTCC-CCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC-CSS
T ss_pred             cccchhhccc----CCceeEEeccccccccc-ccchhhhhhhhhhhhhhheeeeeccccccccccccccccccccc-ccc
Confidence            5667777753    36778888777888895 55667899999999999999999999998866554221222211 222


Q ss_pred             ---hhhhccccC-CCCceEEEEecH-HHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHH
Q psy13322        120 ---IVTMAKGIA-NGFPMGAVVTTT-EIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIG  190 (195)
Q Consensus       120 ---i~~~sK~l~-~G~~~g~v~~~~-~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~  190 (195)
                         +.++||+++ +|+++|++..+. ...+......  .....+.+..++++++.+++....  +.++..++++.+.+.+
T Consensus       196 ~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~  275 (361)
T d1d2fa_         196 WALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIAD  275 (361)
T ss_dssp             EEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHH
Confidence               235589998 899999987653 3333322221  222223445566666666665432  4566667777777766


Q ss_pred             Hhh
Q psy13322        191 YLR  193 (195)
Q Consensus       191 ~L~  193 (195)
                      .+.
T Consensus       276 ~~~  278 (361)
T d1d2fa_         276 KMN  278 (361)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            553

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.29  E-value=5.1e-12  Score=105.96  Aligned_cols=152  Identities=16%  Similarity=0.120  Sum_probs=101.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc---cccCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF---EMHGV  116 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~---~~~~~  116 (195)
                      .+.+.+.+....  .+..++++-+.++.+|. +++.+.+++|.++|++|++++|+||+|.++.+.+......   .....
T Consensus       162 ~~~~~~~~~~~~--~~~~~iii~~p~NPTG~-~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~  238 (401)
T d7aata_         162 FTGAMEDISKIP--EKSIILLHACAHNPTGV-DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQ  238 (401)
T ss_dssp             HHHHHHHHTTSC--TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred             HHHHHHHHhcCC--CceEEEEecCCCCCccc-cCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhh
Confidence            456666666543  36778888888889995 6688999999999999999999999999987655311111   11122


Q ss_pred             Ccch---hhhccccC-CCCceEEEEecHHHHHHhhcc-------ccccCCCchHHHHHHHHHHHHhh------cc--hhH
Q psy13322        117 SPDI---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVI------KD--EEL  177 (195)
Q Consensus       117 ~pdi---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~-------~~~~t~~~~p~~~~aa~aal~~~------~~--~~~  177 (195)
                      .+++   ..+||.++ .||++|+++++.++.+.....       ......+.+.+.++++...++.-      ..  +.+
T Consensus       239 ~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  318 (401)
T d7aata_         239 GIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGM  318 (401)
T ss_dssp             TCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hcccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            2232   36689999 899999999987655544321       12223344556666665555421      11  356


Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy13322        178 QYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~~  194 (195)
                      +++++++++.|.+.|++
T Consensus       319 ~~~~~~~r~~l~~~L~~  335 (401)
T d7aata_         319 ADRIISMRTQLVSNLKK  335 (401)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            67788888888888865

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=4.6e-12  Score=105.98  Aligned_cols=152  Identities=13%  Similarity=0.149  Sum_probs=98.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cc-cCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EM-HGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~-~~~~  117 (195)
                      ...+++.+....  .+..++++-+..+.+|. +++.+.+++|.++|++|++++|+||+|.++.+.+...... .. .+..
T Consensus       159 ~~~~~~~~~~~~--~~~~~i~~~~P~NPTG~-~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~  235 (396)
T d2q7wa1         159 FDALINSLNEAQ--AGDVVLFHGCCHNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMH  235 (396)
T ss_dssp             HHHHHHHHTTCC--TTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHC
T ss_pred             cchHHHHHHHhc--cCcEEEEecCCcCCcCe-ecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhc
Confidence            345555555443  36667888888888895 6688999999999999999999999999987654311111 11 1112


Q ss_pred             cc---hhhhccccC-CCCceEEEEecHHHHHHhhccc------cccC-CCchHHHHHHHHHHHHh------hcc--hhHH
Q psy13322        118 PD---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAA------HFNT-FGGNPVGCVIASTVLDV------IKD--EELQ  178 (195)
Q Consensus       118 pd---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~------~~~t-~~~~p~~~~aa~aal~~------~~~--~~~~  178 (195)
                      ++   +..+||.++ .||++||++++..+.+.+....      ..++ .+.+..++.++.+.+..      .++  +.++
T Consensus       236 ~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  315 (396)
T d2q7wa1         236 KELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMR  315 (396)
T ss_dssp             SCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-
T ss_pred             ccccccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            22   335689998 8999999999876554443221      1222 34455666665555532      111  3456


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++++++++.+.+.|++
T Consensus       316 ~~~~~~r~~l~~~L~~  331 (396)
T d2q7wa1         316 QRIQRMRQLFVNTLQE  331 (396)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7788888888888865

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.5e-11  Score=102.39  Aligned_cols=149  Identities=15%  Similarity=0.182  Sum_probs=107.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++++++.+.     .+++++++-+..+.+|. +.+.+.+++|.++|++++++++.||++.-+.+.+............++
T Consensus       149 ~~~l~~~~~-----~~~~~i~l~~P~NPtG~-v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~  222 (382)
T d1u08a_         149 WQEFAALLS-----ERTRLVILNTPHNPSAT-VWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRE  222 (382)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHT
T ss_pred             HHHHhhhhc-----cCccEEEECCCCccccc-ccccccchhhhhhhccccceeeeecchhhccccccccccccccccccC
Confidence            455554333     36777777666777885 567888999999999999999999999866444421111111111112


Q ss_pred             ----hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322        120 ----IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       120 ----i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L  192 (195)
                          +.++||.++ .||++||+++++++++.+.......+++.+.+.+.++.++++...+  ..+++.++++++.+.+.+
T Consensus       223 ~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~  302 (382)
T d1u08a_         223 RAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNAL  302 (382)
T ss_dssp             TEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHT
T ss_pred             cEEEEeeccccccCCcccchhhhccchhHHHHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhh
Confidence                336689998 8999999999999988887665556677888899998888886533  567788899999888877


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      +.
T Consensus       303 ~~  304 (382)
T d1u08a_         303 NE  304 (382)
T ss_dssp             TS
T ss_pred             cc
Confidence            54

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.24  E-value=7.6e-12  Score=105.75  Aligned_cols=149  Identities=11%  Similarity=-0.003  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc-ccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG-RTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g-r~G~~~~~~~~~~~~p  118 (195)
                      +++|++.|+++...+++++|++.....+.|...+    +++|.++|++||+++++|++|++.. ..++ . .........
T Consensus       196 ~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~-~-~~~~~~~~~  269 (434)
T d2z67a1         196 VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLE-K-LKKAFKYRV  269 (434)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHH-H-HHHHHTSCC
T ss_pred             HHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhccc-c-ccccccCCc
Confidence            7899999987532247888998888878888776    9999999999999999999997432 1111 1 111123456


Q ss_pred             chhhhc--cccCCCCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        119 DIVTMA--KGIANGFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       119 di~~~s--K~l~~G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |+++++  |.++++...+++..+ +.+++.+.......+...+...+.+++..+......++.++..++.+++.++|++
T Consensus       270 D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~  348 (434)
T d2z67a1         270 DAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND  348 (434)
T ss_dssp             SEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCccccccCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            777775  999865556666655 4677776655444444444555555544444333356677788888888888765

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.24  E-value=2.8e-11  Score=98.98  Aligned_cols=99  Identities=13%  Similarity=0.171  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +++|++.+++.....+++.|+++.+.+++|.+.+    +++|.++|++||+++++||+|+ +|..+.   ....++  .|
T Consensus       125 ~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~~---~~~~~g--~D  194 (364)
T d2e7ja1         125 PENFAQTIEETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMPV---SLKEIG--AD  194 (364)
T ss_dssp             HHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBCC---CHHHHT--CS
T ss_pred             HHHHHhhhhhhcccCCceEEEeecCCCCCceeec----chhheeccccccchhhccccch-hhhhhh---cccccc--cc
Confidence            6888888876643357889999999999998887    9999999999999999999996 544332   122223  46


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhc
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTK  148 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~  148 (195)
                      ++++|  |.+++...+|++++++++.+.+..
T Consensus       195 ~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~  225 (364)
T d2e7ja1         195 FIVGSGHKSMAASGPIGVMGMKEEWAEIVLR  225 (364)
T ss_dssp             EEEEEHHHHSSCCSSCEEEEECTTTTTTTTC
T ss_pred             eeeeccccccCCCCCEEEEEECHHHHHHHHh
Confidence            66554  999854468999999887766543

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=3.1e-11  Score=100.60  Aligned_cols=152  Identities=16%  Similarity=0.084  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc----C
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH----G  115 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~----~  115 (195)
                      .+.+++.+....  .+...+++-+..+.+|. .++.+.+++|.++|++|++++|+||+|.++.+.+.........    +
T Consensus       156 ~~~~~~~~~~~~--~~~~i~~~~~p~NPTG~-~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~  232 (394)
T d2ay1a_         156 FEGMKADLAAAK--KGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRI  232 (394)
T ss_dssp             HHHHHHHHHTCC--TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHhhcc--cCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhc
Confidence            345555555443  35667788888888994 6788999999999999999999999999997655311111110    1


Q ss_pred             C-CcchhhhccccC-CCCceEEEEecHHHHHHhhcc-------ccccCCCchHHHHHHHHHHHHh------hcc--hhHH
Q psy13322        116 V-SPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDV------IKD--EELQ  178 (195)
Q Consensus       116 ~-~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~-------~~~~t~~~~p~~~~aa~aal~~------~~~--~~~~  178 (195)
                      . ...+.++||.++ .||++|+++++..+.+.....       ......+.+...++.+...+..      ..+  +.++
T Consensus       233 ~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  312 (394)
T d2ay1a_         233 PEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVR  312 (394)
T ss_dssp             SSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            1 111336689998 899999999886554433221       1111222233444443333321      111  3566


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++++++++.|.+.|++
T Consensus       313 ~~~~~~r~~l~~~L~~  328 (394)
T d2ay1a_         313 SGMLRLREQLAGELRD  328 (394)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7788888888888764

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=2.6e-11  Score=101.42  Aligned_cols=152  Identities=14%  Similarity=0.149  Sum_probs=96.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cc-cCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EM-HGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~-~~~~  117 (195)
                      .+.+.+.+....  .+..++++-+.++.+|. +++.+.+++|.++|++|++++|+||+|.++.+.+...... .. .+..
T Consensus       160 ~~~~~~~~~~~~--~~~~~~~~~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~  236 (397)
T d3tata_         160 FNDLLATLKTLP--ARSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAG  236 (397)
T ss_dssp             HHHHHHHHTTCC--SSCCCEECSSSCSSSCC-CCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHhhhcc--cccEEEEecCCCCCCCe-eCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcC
Confidence            455555555442  35667888888888995 7788999999999999999999999999986644311111 11 1222


Q ss_pred             cc---hhhhccccC-CCCceEEEEecHHHHHHhh-------ccccccCCCchHHHHHHHHHHHHhhc------c--hhHH
Q psy13322        118 PD---IVTMAKGIA-NGFPMGAVVTTTEIAQVLT-------KAAHFNTFGGNPVGCVIASTVLDVIK------D--EELQ  178 (195)
Q Consensus       118 pd---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~-------~~~~~~t~~~~p~~~~aa~aal~~~~------~--~~~~  178 (195)
                      ++   +..+||.++ .|||+||++++..+.+...       ........+.+...++++...+....      +  +.++
T Consensus       237 ~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  316 (397)
T d3tata_         237 LPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMR  316 (397)
T ss_dssp             CCCEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             CceEEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            23   346689999 7999999998754333222       11233334445556665555554211      1  3455


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy13322        179 YNCKQVSAQIIGYLRV  194 (195)
Q Consensus       179 ~~l~~~~~~l~~~L~~  194 (195)
                      ++++++++.+.+.|++
T Consensus       317 ~~~~~~r~~l~~~L~~  332 (397)
T d3tata_         317 TRILAMRQELVKVLST  332 (397)
T ss_dssp             HHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666777777776653

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=6.9e-10  Score=91.14  Aligned_cols=133  Identities=18%  Similarity=0.185  Sum_probs=87.9

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch---hhhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI---VTMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi---~~~sK~l~-~G  130 (195)
                      ++.+|++-+..+.+|.+ .+.+.++.+.+.++ ++.++|+||++..|..... .  .......+.+   -+|||++| +|
T Consensus       144 ~~~~v~~~~pnNPtG~~-~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~-~--~~~~~~~~~~iv~~S~SK~~~laG  218 (354)
T d1fg7a_         144 GVKVVYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQAS-L--AGWLAEYPHLAILRTLSKAFALAG  218 (354)
T ss_dssp             TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGC-S--GGGTTTCTTEEEEEESSSTTCCGG
T ss_pred             ccceeeccCCCccceeE-eeeccccccccccc-ccccccccccchhhccccc-c--chhhcccccceEEeCCccccCCCc
Confidence            67788888888888865 46777888877765 6788888888876643322 1  1112223332   27899999 99


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--c-chhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--K-DEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~-~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      ||+||+++++++++.+.+...  .+..+..++.++.+++..-  . .....+++.+.++++.+.|++
T Consensus       219 lRiGy~i~~~~~i~~l~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~  283 (354)
T d1fg7a_         219 LRCGFTLANEEVINLLMKVIA--PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE  283 (354)
T ss_dssp             GCCEEEEECHHHHHHHHHHSC--SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhhhcC--ccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHh
Confidence            999999999999988866433  2334445555544444321  1 134456677788888887765

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=1.8e-09  Score=88.08  Aligned_cols=129  Identities=16%  Similarity=0.117  Sum_probs=89.3

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G  130 (195)
                      +.+++++-...+..|.+.. .+.|.   + +.++++++|+||++..+..... .   ......+.   +-++||+++ .|
T Consensus       138 ~~~~l~l~nP~NPtG~~~s-~~~l~---~-~~~~~~~ii~Dd~~~~~~~~~~-~---~~~~~~~~~i~~~S~SK~~~~~G  208 (334)
T d2f8ja1         138 EGDVVFIPNPNNPTGHVFE-REEIE---R-ILKTGAFVALDEAYYEFHGESY-V---DFLKKYENLAVIRTFSKAFSLAA  208 (334)
T ss_dssp             TTEEEEEESSCTTTCCCCC-HHHHH---H-HHTTTCEEEEECTTGGGTCCCC-G---GGGGTCSSEEEEEESTTTSSCTT
T ss_pred             cceEEEecccccccceeec-HHHhh---c-cccceeEEeecccchhhccccc-c---cccccCceEEEEecCccccchhh
Confidence            4556666666788887664 44443   3 3578999999999976533222 1   11111222   336789999 89


Q ss_pred             CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |++|++++++++++.+....  .+++.++.++.++.+.++..+. ++.++.+++++++|.+.|++
T Consensus       209 ~R~G~~~~~~~~i~~l~~~~--~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  271 (334)
T d2f8ja1         209 QRVGYVVASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALRE  271 (334)
T ss_dssp             TCEEEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccchHHHHHHHHhh--cccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999998887653  3345577788888888875432 56678889999999988875

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=2.5e-10  Score=96.31  Aligned_cols=149  Identities=10%  Similarity=-0.050  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc-ccCCCcccccccCC-
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG-RTGDNYWGFEMHGV-  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g-r~G~~~~~~~~~~~-  116 (195)
                      ++++|++.|++... .++++|++.......|...+    +++|.++|++||+++++|++|++.- ...+ . .....++ 
T Consensus       179 d~~~l~~~i~~~~~-~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~-~-~~~~~~~~  251 (445)
T d3bc8a1         179 DLKAVEAKIQELGP-EHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMH-L-IQQGARVG  251 (445)
T ss_dssp             CHHHHHHHHHHHCG-GGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHH-H-HHHHHHHS
T ss_pred             CHHHHHHHHHhccc-cCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhhhhccc-c-chhccCcC
Confidence            36889999987654 37889999988888898777    9999999999999999999998431 1111 0 0000111 


Q ss_pred             Ccchhhhc--cccCCCCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        117 SPDIVTMA--KGIANGFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       117 ~pdi~~~s--K~l~~G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      ..|++++|  |.++++...|+++.+ +.+.+.+.........+.+.+.+.+++..+..-......+...++.+++.+.|+
T Consensus       252 ~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~  331 (445)
T d3bc8a1         252 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLK  331 (445)
T ss_dssp             CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Confidence            34666664  988865556677665 456665544333333333444444444333322224455556666666766665


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       332 ~  332 (445)
T d3bc8a1         332 K  332 (445)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=3.6e-10  Score=90.16  Aligned_cols=109  Identities=12%  Similarity=-0.012  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      .+.+++.+...... .++..++++..+++.|..+.+.+.|++|+++|++||+++++||+++++...+. .+.........
T Consensus       112 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~-~~~~~~~~~~~  190 (343)
T d1m6sa_         112 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIAS-GVPVKEYAGYA  190 (343)
T ss_dssp             HHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHH-CCCHHHHHHTC
T ss_pred             HHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEecccccccccccc-ccchhhhcccc
Confidence            45666666543211 36778888888888888888999999999999999999999999986544332 21222122223


Q ss_pred             chhhhccccC-CCCceEEEEecHHHHHHhhcc
Q psy13322        119 DIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKA  149 (195)
Q Consensus       119 di~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~  149 (195)
                      +..+++|..+ +|...++++...+........
T Consensus       191 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  222 (343)
T d1m6sa_         191 DSVMFCLSKGLCAPVGSVVVGDRDFIERARKA  222 (343)
T ss_dssp             SEEEEESSSTTCCSSCEEEEECHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccHHHHhhhHhh
Confidence            3455666666 456778888888766555443

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=98.98  E-value=1.3e-09  Score=93.01  Aligned_cols=152  Identities=13%  Similarity=0.038  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc---c---CCCcc--cc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR---T---GDNYW--GF  111 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr---~---G~~~~--~~  111 (195)
                      ++.|++.|+++.+ +.++.+++|...+.+|-.+++.+.|++|+++|++||+.+++|+++. +|-   .   ...+.  +.
T Consensus       160 ~~~le~~I~~~~~-~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~-~~~a~~~~~~~~~~~~~~i  237 (456)
T d1c7ga_         160 LNKLATLIKEKGA-ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRC-VENAYFIKEQEAGYENVSI  237 (456)
T ss_dssp             HHHHHHHHHHHCG-GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH-HHHHHHHHHHSTTCTTSCH
T ss_pred             HHHHHHHhhhcCC-ccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchh-hcchhhhcccccccCCCCh
Confidence            7899999988754 4889999999988888889999999999999999999999999986 211   0   00000  01


Q ss_pred             c----ccCCCcchhhh--ccccCCCCceEEEEecH-HHHHHhhccc----cccCCCc-hHHHHHHHHHHHHhhcchhHHH
Q psy13322        112 E----MHGVSPDIVTM--AKGIANGFPMGAVVTTT-EIAQVLTKAA----HFNTFGG-NPVGCVIASTVLDVIKDEELQY  179 (195)
Q Consensus       112 ~----~~~~~pdi~~~--sK~l~~G~~~g~v~~~~-~i~~~l~~~~----~~~t~~~-~p~~~~aa~aal~~~~~~~~~~  179 (195)
                      .    ...-..|++++  +|.++++ ..|++++++ ++.+.++...    ...++++ +...+.+....+......+..+
T Consensus       238 ~~i~~~~~~~ad~~s~s~~K~~~~~-~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~  316 (456)
T d1c7ga_         238 KDIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIE  316 (456)
T ss_dssp             HHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hhhccccccccccEEEecccccccc-ceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHH
Confidence            0    00012366655  4777632 136666654 5666554321    2223333 3444444444455544455556


Q ss_pred             HHHHHHHHHHHHhhc
Q psy13322        180 NCKQVSAQIIGYLRV  194 (195)
Q Consensus       180 ~l~~~~~~l~~~L~~  194 (195)
                      +..++.++|.+.|.+
T Consensus       317 ~r~~~~~~L~e~L~~  331 (456)
T d1c7ga_         317 HRVKQVRYLGDKLRE  331 (456)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            666677888888865

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=98.76  E-value=2.1e-08  Score=79.37  Aligned_cols=154  Identities=8%  Similarity=-0.130  Sum_probs=85.5

Q ss_pred             HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322         40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP  118 (195)
Q Consensus        40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p  118 (195)
                      ++.+++.+...... ....+++++.++...+....+.++++++.++|++||+++++|++|++.++.+. ..........+
T Consensus       118 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~~~~~~~~  196 (345)
T d1v72a1         118 IVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSL-GCSPAEMTWKA  196 (345)
T ss_dssp             HHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHH-TCCTTTTTGGG
T ss_pred             HHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceecccc-ccCHHHhhccc
Confidence            57777776643211 35667777887777766788889999999999999999999999997655543 22333333333


Q ss_pred             c--hhhhccccCCCCceEEEEe-cHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        119 D--IVTMAKGIANGFPMGAVVT-TTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       119 d--i~~~sK~l~~G~~~g~v~~-~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      +  ..+++|..+++...+.... ............  ...+......+.+++...+..........+..++..++.+.|.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  276 (345)
T d1v72a1         197 GVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLE  276 (345)
T ss_dssp             TCCEEEECCGGGTCSSCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccCccccccccccccccchhhhhhhccccccccccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHH
Confidence            3  4455666664443343333 333332222221  2222222222222222222222223344555566666666665


Q ss_pred             c
Q psy13322        194 V  194 (195)
Q Consensus       194 ~  194 (195)
                      +
T Consensus       277 ~  277 (345)
T d1v72a1         277 G  277 (345)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=98.72  E-value=1.1e-07  Score=77.88  Aligned_cols=141  Identities=12%  Similarity=0.040  Sum_probs=94.7

Q ss_pred             HHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc----CCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         44 VNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN----NGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        44 ~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~----~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++... .++++|++..+.+++|.+.+    +++|.++|++|    ++++++|.+|+ +|..   .  +......+|
T Consensus       135 ~~~l~~~i~-~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~---~--~~~~~~~~D  203 (381)
T d1elua_         135 AAVLANHLG-PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL---P--LDFSRLEVD  203 (381)
T ss_dssp             HHHHHTTCC-TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB---C--CCTTTSCCS
T ss_pred             HHHHHhhhc-ccccccccccccccccccch----hhHHHHHHhhcccccccccccccccc-cccc---c--ccccccccc
Confidence            334444433 48899999999999999888    89999999985    69999999987 5322   1  222234678


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhcccc----------------------ccCCCchHHHHHHHHHHHHhhcc-
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAH----------------------FNTFGGNPVGCVIASTVLDVIKD-  174 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~----------------------~~t~~~~p~~~~aa~aal~~~~~-  174 (195)
                      ++++|  |.+++...+|++..++++.+.+.....                      ......+.....+..++++.+.. 
T Consensus       204 ~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~  283 (381)
T d1elua_         204 YYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQ  283 (381)
T ss_dssp             EEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHh
Confidence            77775  999865557888888876655432110                      00112345566666677766543 


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhcC
Q psy13322        175 ---EELQYNCKQVSAQIIGYLRVV  195 (195)
Q Consensus       175 ---~~~~~~l~~~~~~l~~~L~~l  195 (195)
                         +...++..++.+++.+.|+++
T Consensus       284 g~~~~~~~~~~~~~~~l~~~L~~~  307 (381)
T d1elua_         284 GTAEERYQAICQRSEFLWRGLNQL  307 (381)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccchhhhhhHHHHHHHHHhcC
Confidence               344578888889999888763

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=5e-08  Score=81.39  Aligned_cols=129  Identities=12%  Similarity=0.111  Sum_probs=91.8

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC-CC
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA-NG  130 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~-~G  130 (195)
                      ++++.|.+.-+.+..|.+.+    +++|.++|+++|+++++|=+|+ +|..   .....  ...+|++++|  |.+| .|
T Consensus       162 ~~t~lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g~~---~id~~--~~~~D~~~~s~hK~~Gp~G  231 (405)
T d1jf9a_         162 EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH---PVDVQ--ALDCDFYVFSGHKLYGPTG  231 (405)
T ss_dssp             TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS---CCCHH--HHTCSEEEEEGGGTTSCSS
T ss_pred             CCcEEEEEecCCCcccccCc----hHHhhhHHHHcCCeeeccccee-cccc---ccchh--hcCCceeeccccccccCCC
Confidence            48899999999999999999    9999999999999999999987 4322   11122  2457888886  9876 34


Q ss_pred             CceEEEEecHHHHHHhhcccccc----------------------CCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHH
Q psy13322        131 FPMGAVVTTTEIAQVLTKAAHFN----------------------TFGGNPVGCVIASTVLDVIKD---EELQYNCKQVS  185 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~l~~~~~~~----------------------t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~  185 (195)
                        +|++..++++.+.+.......                      .-..+..++++..++++.+.+   +...++.+...
T Consensus       232 --~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~  309 (405)
T d1jf9a_         232 --IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLM  309 (405)
T ss_dssp             --CEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             --ceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence              788899988766543211000                      012366777788888887643   56667777777


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      +++.+.|+.
T Consensus       310 ~~~~~~l~~  318 (405)
T d1jf9a_         310 HYALSQLES  318 (405)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHhhhhc
Confidence            777777654

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=5.5e-08  Score=80.23  Aligned_cols=139  Identities=11%  Similarity=0.094  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      ++.+++.+.     +++++|++..+.+.+|.+.+    +++|.++|++||+++++|.+|+ +|...     +......+|
T Consensus       133 ~~~~~~~i~-----~~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~~-----~d~~~~~~D  197 (391)
T d1p3wa_         133 LKELEAAMR-----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKLP-----IDLSQLKVD  197 (391)
T ss_dssp             HHHHHHHCC-----TTEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTBC-----CCTTTSCCS
T ss_pred             HHHHHHhCC-----CCcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCcc-----ccchhcccc
Confidence            566666664     48899999999999999888    8999999999999999999997 54321     111234566


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhccccc------c-CCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHF------N-TFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI  188 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~------~-t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l  188 (195)
                      ++++|  |.+| +..+|++.++++..........+      . +...+....++...+++...+  ....+++++...++
T Consensus       198 ~~~~s~~k~~g-~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  276 (391)
T d1p3wa_         198 LMSFSGHKIYG-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRL  276 (391)
T ss_dssp             EEEEESTTTTS-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccC-CCceEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHH
Confidence            66554  7765 22367777777654433322111      1 112222233332333333322  34567778888888


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|..
T Consensus       277 ~~~L~~  282 (391)
T d1p3wa_         277 WNGIKD  282 (391)
T ss_dssp             HHTTTT
T ss_pred             HHHHHh
Confidence            888764

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=98.67  E-value=1.6e-07  Score=78.25  Aligned_cols=139  Identities=12%  Similarity=0.049  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.|+..+.     ++++.|.+--+.+..|.+.+    +++|.++|+++|+++++|=+|+ +|..-   .-+.  ...+|
T Consensus       153 ~~~l~~~~~-----~~t~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~~---id~~--~~~~D  217 (408)
T d1t3ia_         153 LEHFKTLLS-----EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP---LDVQ--LIDCD  217 (408)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHH--HHTCS
T ss_pred             HHHhhhccC-----CCceEEEEecccccccccCc----HHHHhhhhhccCceeeecccee-ccccc---cccc--ccCCc
Confidence            355555433     48889999999999999998    9999999999999999998887 54321   1122  23568


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhccccc--------------------c-CCCchHHHHHHHHHHHHhhcc--
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHF--------------------N-TFGGNPVGCVIASTVLDVIKD--  174 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~--------------------~-t~~~~p~~~~aa~aal~~~~~--  174 (195)
                      ++++|  |-+| +-.+|++..++++.........+                    + +-..+..+++++.++++.+.+  
T Consensus       218 ~~~~s~hK~~g-p~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g  296 (408)
T d1t3ia_         218 WLVASGHKMCA-PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLG  296 (408)
T ss_dssp             EEEEEGGGTTS-CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC
T ss_pred             eEEeccccccC-CCCccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcC
Confidence            88886  8654 33378999999887655332110                    0 112355666777788887643  


Q ss_pred             -hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 -EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 -~~~~~~l~~~~~~l~~~L~~  194 (195)
                       +++.++..++.+++.+.+++
T Consensus       297 ~~~i~~~~~~l~~~l~~~~~~  317 (408)
T d1t3ia_         297 MENIHNYEVELTHYLWQGLGQ  317 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhHHhhhhcc
Confidence             56777888888888887764

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=98.64  E-value=5.3e-08  Score=82.31  Aligned_cols=136  Identities=9%  Similarity=-0.119  Sum_probs=81.1

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc-cccCCCcccccccC------CCcchhhhc--c
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF-GRTGDNYWGFEMHG------VSPDIVTMA--K  125 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~-gr~G~~~~~~~~~~------~~pdi~~~s--K  125 (195)
                      +...+++..++++.|.+.+    +++|.++|++||++|++||+|..- ...+.........+      ...|++++|  |
T Consensus       173 ~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK  248 (462)
T d1c4ka2         173 RPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHK  248 (462)
T ss_dssp             CCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHH
T ss_pred             CCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCc
Confidence            4556777788899999888    999999999999999999999732 11111000111111      123777664  9


Q ss_pred             ccCCCCceEEEEecHHHHH---------Hhhccc-cccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHHh
Q psy13322        126 GIANGFPMGAVVTTTEIAQ---------VLTKAA-HFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       126 ~l~~G~~~g~v~~~~~i~~---------~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~l~~~L  192 (195)
                      .+++.-..+.+..++....         .+.... ...|.+++...+++..++...+..   +++.++..++.+++++++
T Consensus       249 ~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l  328 (462)
T d1c4ka2         249 QQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKL  328 (462)
T ss_dssp             HSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9983222344444432211         111111 223445555566666666665543   456677778888888887


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      ++
T Consensus       329 ~~  330 (462)
T d1c4ka2         329 IK  330 (462)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=98.57  E-value=8e-08  Score=81.13  Aligned_cols=123  Identities=17%  Similarity=0.009  Sum_probs=85.3

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc-ch--hhhccccC-C
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP-DI--VTMAKGIA-N  129 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p-di--~~~sK~l~-~  129 (195)
                      .+..++++-...+.+|.+..           +..+++.+|.||+|.+..++     .+.  ...+ +|  -++||.+| +
T Consensus       195 ~~~~ii~l~sPnNPtG~l~~-----------~v~~~~~~I~DEaY~~~~f~-----~~~--~~~~~~Ivl~S~SK~fgla  256 (425)
T d2hoxa1         195 PEQYIEMVTSPNNPEGLLRH-----------AVIKGCKSIYDMVYYWPHYT-----PIK--YKADEDILLFTMSKFTGHS  256 (425)
T ss_dssp             GGGEEEEEESSCTTTCCCCC-----------CSSTTCEEEEECTTCSTTTS-----CCC--SCBCCSEEEEEHHHHTSCG
T ss_pred             CCceEEEEECCCCCCcchhh-----------hhhhCCEEEEeccccCcccc-----chh--hhcCCeEEEEeCHHhccCc
Confidence            36678888888888997643           23468999999998542221     121  1122 23  37799999 9


Q ss_pred             CCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-------------hhHHHHHHHHHHHHHHHhhc
Q psy13322        130 GFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-------------EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       130 G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-------------~~~~~~l~~~~~~l~~~L~~  194 (195)
                      |||+||++++ +.+++.+......++++.+.+++.+++++|+....             +..++.++++.+++++.|++
T Consensus       257 GlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~  335 (425)
T d2hoxa1         257 GSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ  335 (425)
T ss_dssp             GGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999997665 56777777665666778889999999998875311             23456677788888877754

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.53  E-value=6.7e-07  Score=74.31  Aligned_cols=136  Identities=15%  Similarity=0.132  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.+.     .++++|++|++-+....++.    |++|+++|+++|+++|+|...++-  .     .+.....-.|
T Consensus       123 ~~~~~~ai~-----~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~atP--~-----~~~Pl~~GaD  186 (380)
T d1ibja_         123 LDEVAAAIG-----PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMSP--V-----LSRPLELGAD  186 (380)
T ss_dssp             HHHHHHHCC-----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTCT--T-----TCCGGGTTCS
T ss_pred             HHHHHHHhc-----cCccEEEecccccccccccc----HHHHHHHHHHcCCeEEeecccccc--c-----cccccccCCC
Confidence            456666553     48899999999999988887    999999999999999999986521  1     1222223356


Q ss_pred             hhh--hccccCC-C-CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IVT--MAKGIAN-G-FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~~--~sK~l~~-G-~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      |++  +.|.++| | .-+|+++.+ +++.+.+........-..+|..+...+..|+.+.  -.+++..+|...+.+.|+
T Consensus       187 iVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~--lRm~~~~~nA~~lA~~L~  263 (380)
T d1ibja_         187 IVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLS  263 (380)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchhhh--hhHHHHHHHHHHHHHHHH
Confidence            664  4599984 2 456676655 5566655443322222346888877777777653  234555566666666554

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=98.48  E-value=3.8e-07  Score=76.06  Aligned_cols=136  Identities=10%  Similarity=0.090  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.++     +++++|++|++-+....+..    +++|+++|+++|+++++|-..+.    .   ..+.-+.+-.|
T Consensus       134 ~~~~~~ai~-----~~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~at----P---~~~~Pl~~GaD  197 (392)
T d1gc0a_         134 LQALEAAMT-----PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCT----P---YLQRPLELGAD  197 (392)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTH----H---HHCCGGGGTCS
T ss_pred             HHHHHHhCC-----CCCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEEecCccC----c---cccChHHhCCC
Confidence            467777665     47889999999999998888    99999999999999999988652    1   01111223356


Q ss_pred             hhh--hccccCC-C-CceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IVT--MAKGIAN-G-FPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~~--~sK~l~~-G-~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      |++  .+|.++| | .-.|.++++++.+...+...  .......+|..+...+..|+.+.  -.+++..+|...+.+.|+
T Consensus       198 ivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL~--lRm~~~~~nA~~lA~~L~  275 (392)
T d1gc0a_         198 LVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLN--LRMDRHCANAQVLAEFLA  275 (392)
T ss_dssp             EEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccHH--HHHHHHHHHHHHHHHHHH
Confidence            664  4599985 3 56788888887766543221  11223346888887777777653  234555555555555554

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=98.39  E-value=1.9e-06  Score=71.81  Aligned_cols=136  Identities=12%  Similarity=0.065  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.++     ++.++|.+|++-+....+..    +++|+++|+++|+++|+|-..+.    .   ..+..+.+-.|
T Consensus       138 ~~~~~~~i~-----~~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~at----P---~~~~Pl~~GaD  201 (397)
T d1y4ia1         138 PEEIRAAMR-----PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMS----P---YCQQPLQLGAD  201 (397)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC----T---TTCCGGGGTCS
T ss_pred             HHHHHHhcC-----CCCcEEEecCCcccceeecc----cHHHHHHhhcCCceEEecCcccC----c---ccCcchhcCCC
Confidence            466666654     47899999999888877777    99999999999999999987542    1   11222223346


Q ss_pred             hhhh--ccccCCC--CceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IVTM--AKGIANG--FPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~~~--sK~l~~G--~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      |++-  .|.++|.  .-+|+++++++.+...+...  ....-..+|..+..++..|+.+.  -.+++-.+|...+.+.|+
T Consensus       202 ivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL~--lRm~~~~~nA~~lA~~L~  279 (397)
T d1y4ia1         202 IVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG--IRMERHCENALKIARFLE  279 (397)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             EEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcHH--HHHHHHHHHHHHHHHHHH
Confidence            6644  5999853  56788999987665433221  11122347888887777777653  234555555566655554

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.36  E-value=6.3e-06  Score=68.67  Aligned_cols=127  Identities=10%  Similarity=0.042  Sum_probs=87.2

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh--hhccccCC-C
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV--TMAKGIAN-G  130 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~--~~sK~l~~-G  130 (195)
                      .++++|++|++-+....++.    |++|.++|+++|+++|+|...+.    .   ..+..+.+-.||+  ..+|.++| |
T Consensus       152 ~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~vVDnT~at----P---~~~~Pl~~GaDiVihS~TKy~~Ghs  220 (398)
T d1qgna_         152 KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFAT----P---LNQKALALGADLVLHSATKFLGGHN  220 (398)
T ss_dssp             SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC----T---TTCCTTTTTCSEEEECTTTTTTCSS
T ss_pred             ccceEEEccCccccccccch----HHHHHHHHhhcCCEEEecceeec----c---ccCCchhhCCCEEEEechhhcCccc
Confidence            37889999999998887777    99999999999999999987541    1   1122223345665  45699984 2


Q ss_pred             -CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        131 -FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       131 -~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                       .-.|++++++++...+........-..+|..+...+..|+.+.  -.+++..+|...+.+.|+
T Consensus       221 dv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL~--lRm~~~~~nA~~lA~~L~  282 (398)
T d1qgna_         221 DVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILE  282 (398)
T ss_dssp             SCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHHH--HHHHHHHHHHHHHHHHHH
Confidence             5678888888887776654332233457888877777776653  234555555666655554

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=3.2e-06  Score=70.21  Aligned_cols=136  Identities=13%  Similarity=0.094  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.+.     ++.++|++|++-+..-.++.    +++|+++|+++|+++|+|...+.    .-   .+..+..-.|
T Consensus       125 ~~~~~~~~~-----~~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~at----P~---~~~Pl~~GaD  188 (384)
T d1cs1a_         125 EQALRAALA-----EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLS----PA---LQNPLALGAD  188 (384)
T ss_dssp             HHHHHHHHH-----TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC----TT---TCCGGGGTCS
T ss_pred             HHHHHhhcc-----ccccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEeccccC----cc---cccccccCCC
Confidence            456777666     36668999999998887777    99999999999999999988631    11   1111223346


Q ss_pred             hh--hhccccCC-C-CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IV--TMAKGIAN-G-FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~--~~sK~l~~-G-~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      |+  ..+|.++| | .-+|+++++ +++.+.+...........+|..+...+..|+.+.  -.+++-.+|...+.+.|+
T Consensus       189 iVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL~--lRm~~~~~nA~~lA~~L~  265 (384)
T d1cs1a_         189 LVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQ  265 (384)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHT
T ss_pred             EEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchhH--HHHHHHHHHHHHHHHhcc
Confidence            65  44699984 3 466777774 4555555433222223457887777777766553  234555666666666664

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=4.9e-06  Score=67.89  Aligned_cols=141  Identities=15%  Similarity=0.141  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      .+.+++.+.+.    +++.|.+--+.+.+|.+.+    +++|.++|++||+++++|.+|+ +|..     .+.......|
T Consensus       133 ~~~~~~~~~~~----~~~~v~~~~~~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs-~g~~-----~~d~~~~~~D  198 (388)
T d1h0ca_         133 LQEVEEGLAQH----KPVLLFLTHGESSTGVLQP----LDGFGELCHRYKCLLLVDSVAS-LGGT-----PLYMDRQGID  198 (388)
T ss_dssp             HHHHHHHHHHH----CCSEEEEESEETTTTEECC----CTTHHHHHHTTTCEEEEECTTT-TTTS-----CCCTTTTTCS
T ss_pred             hHHHHHHhccC----CcceEEEeeeeeccccccC----HHHHHHHhhcccccceeccccc-cccc-----cccccccccc
Confidence            45566656554    3446666667777898888    9999999999999999999998 4322     1222234457


Q ss_pred             hhhhc--cccCCCCceEEEEecHHHHHHhhccc-----------------------cccCCCchHHHHHHHHHHHHhhcc
Q psy13322        120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAA-----------------------HFNTFGGNPVGCVIASTVLDVIKD  174 (195)
Q Consensus       120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~-----------------------~~~t~~~~p~~~~aa~aal~~~~~  174 (195)
                      ++++|  |.+++-.-++.+..++...+.+....                       ..+....+..+..+..++++.+.+
T Consensus       199 ~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~  278 (388)
T d1h0ca_         199 ILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAE  278 (388)
T ss_dssp             EEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             eecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHH
Confidence            77775  88863223678888887666553211                       011122455667777788877644


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 ---EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ---~~~~~~l~~~~~~l~~~L~~  194 (195)
                         +...++..++.+++++.++.
T Consensus       279 ~g~~~~~~~~~~l~~~l~~~~~~  301 (388)
T d1h0ca_         279 QGLENSWRQHREAAAYLHGRLQA  301 (388)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccccccchhHHHHHHHhh
Confidence               45556677777777777653

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=3e-06  Score=70.73  Aligned_cols=141  Identities=16%  Similarity=0.128  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~  117 (195)
                      ++++++++.++.+|+    .||+-  +|......+    +++++++|++.|++|++|-+|. |+--.|. + . .-+.. 
T Consensus       153 Dyd~l~~~a~~~kPk----lIi~G--~S~y~r~~d----~~~~reiad~vga~l~~D~aH~~GLIa~g~-~-~-sP~~~-  218 (416)
T d1dfoa_         153 DYADLEKQAKEHKPK----MIIGG--FSAYSGVVD----WAKMREIADSIGAYLFVDMAHVAGLVAAGV-Y-P-NPVPH-  218 (416)
T ss_dssp             CHHHHHHHHHHHCCS----EEEEE--CSSCCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTS-S-C-CCTTT-
T ss_pred             cHHHHHHHHHHhccc----eEEec--ccccccccC----HHHHHHHHHhcCceEEcchhhhhcceeccc-c-C-Ccccc-
Confidence            378999998887664    55554  354554455    9999999999999999999996 5533332 2 1 11233 


Q ss_pred             cchhhhc--cccCCCCceEEEEec---HHHHHHhhccccccCCCchHH-HHHHHHHHHHhhcc---hhHHHHHHHHHHHH
Q psy13322        118 PDIVTMA--KGIANGFPMGAVVTT---TEIAQVLTKAAHFNTFGGNPV-GCVIASTVLDVIKD---EELQYNCKQVSAQI  188 (195)
Q Consensus       118 pdi~~~s--K~l~~G~~~g~v~~~---~~i~~~l~~~~~~~t~~~~p~-~~~aa~aal~~~~~---~~~~~~l~~~~~~l  188 (195)
                      .|++|.+  |+|.| -+.|.++++   +++.+.+....+....+++-+ .+++-..++.....   .+..+++.+|.+.|
T Consensus       219 aDvvt~tThKtlrG-PrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~L  297 (416)
T d1dfoa_         219 AHVVTTTTHKTLAG-PRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAM  297 (416)
T ss_dssp             SSEEEEESSSTTCC-CSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             cceeeeehhhcccC-CCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            3888665  99974 355788875   577777776666666665433 33443455555432   35667788888888


Q ss_pred             HHHhhc
Q psy13322        189 IGYLRV  194 (195)
Q Consensus       189 ~~~L~~  194 (195)
                      .+.|.+
T Consensus       298 a~~L~~  303 (416)
T d1dfoa_         298 VEVFLE  303 (416)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888764

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.26  E-value=5.1e-06  Score=69.05  Aligned_cols=140  Identities=14%  Similarity=0.174  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~  116 (195)
                      +.++++++.++.+|+    .||+-. .+.    +..+   +++++++|++.|++|++|=+|. |+--.|.  +... +..
T Consensus       151 D~d~l~~~a~~~kPk----lIi~G~S~y~----r~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~--~~~P-~~~  216 (405)
T d1kl1a_         151 DYDDVREKARLHRPK----LIVAAASAYP----RIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGL--HPNP-VPY  216 (405)
T ss_dssp             CHHHHHHHHHHHCCS----EEEECCSSCC----SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCS-TTT
T ss_pred             cHHHHHHHHHhhCcc----eEEecccccc----cccC---hHHHHHHHhhhCCEEecchhhHhhhhhhhh--cCCh-hhh
Confidence            378999999988664    566544 222    2333   8999999999999999999996 5533332  2111 232


Q ss_pred             Ccchhhhc--cccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHH-HHHHHh-hcc--hhHHHHHHHHHHHHHH
Q psy13322        117 SPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIA-STVLDV-IKD--EELQYNCKQVSAQIIG  190 (195)
Q Consensus       117 ~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa-~aal~~-~~~--~~~~~~l~~~~~~l~~  190 (195)
                       .|++|.+  |+|.| =+.|.+++++++.+.+.+..+....+++-+...|+ ..++.. +..  .+..+++.+|.+.|.+
T Consensus       217 -aDvvt~tThKtlrG-Prgg~I~~~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~  294 (405)
T d1kl1a_         217 -AHFVTTTTHKTLRG-PRGGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLAS  294 (405)
T ss_dssp             -CSEEEEESSSTTCC-CSCEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             -hhheeccccccccC-CCCceEEecchhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence             4888776  99974 35689999999988888777766666654443333 344444 332  4566777788888887


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|.+
T Consensus       295 ~L~~  298 (405)
T d1kl1a_         295 ALQN  298 (405)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7754

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.26  E-value=9.4e-06  Score=65.31  Aligned_cols=129  Identities=12%  Similarity=0.127  Sum_probs=84.4

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccCCCCc
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIANGFP  132 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~~G~~  132 (195)
                      ++..|.+--+.+.+|.+.+    +++|.++|++||+++++|=+|+ +|..     .+.......|++++|  |.+++..-
T Consensus       127 ~~~~v~~~~~~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs-~G~~-----~~d~~~~~~D~~~~s~~K~l~gp~G  196 (361)
T d1m32a_         127 TISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGI-----PMDIAALHIDYLISSANKCIQGVPG  196 (361)
T ss_dssp             TCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTS-----CCCTTTTTCSEEEEESSSTTCCCSS
T ss_pred             CccceEEEeeecccccchh----hhhhhhhhcccceeeEeecccc-cCcc-----cccccccccceEEeeecccccCCCC
Confidence            6667777777778898888    9999999999999999999998 5432     122223456888887  88863222


Q ss_pred             eEEEEecHHHHHHhhccc------------------cccCCCchHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHH
Q psy13322        133 MGAVVTTTEIAQVLTKAA------------------HFNTFGGNPVGCVIASTVLDVIKDE----ELQYNCKQVSAQIIG  190 (195)
Q Consensus       133 ~g~v~~~~~i~~~l~~~~------------------~~~t~~~~p~~~~aa~aal~~~~~~----~~~~~l~~~~~~l~~  190 (195)
                      +|++..+++..+......                  ....+..+...+.+...++.....+    ....+.+...+.+.+
T Consensus       197 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  276 (361)
T d1m32a_         197 FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVA  276 (361)
T ss_dssp             EEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence            788888887665443221                  1223344566677777777655332    333445555556665


Q ss_pred             Hhh
Q psy13322        191 YLR  193 (195)
Q Consensus       191 ~L~  193 (195)
                      .++
T Consensus       277 ~~~  279 (361)
T d1m32a_         277 GMR  279 (361)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=3.6e-05  Score=62.44  Aligned_cols=140  Identities=16%  Similarity=0.114  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC--CEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN--GLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~--~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      .+.+++.+.+.    ++..+.+-.+...+|...+    ++.+.++|++|+  +++++|-+++ +|..     .+......
T Consensus       124 ~~~~~~~~~~~----~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs-~g~~-----pid~~~~g  189 (382)
T d2bkwa1         124 LELITEKLSQN----SYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE-----EFEFDEWG  189 (382)
T ss_dssp             HHHHHHHHHHS----CCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS-----CCCTTTTT
T ss_pred             hhHHHHHhhhc----cchheeeeecccccccccc----chhhhhhccccccceeeeeecccc-cccc-----cccccccC
Confidence            45666666643    4446666667677888888    888889888775  9999999988 5322     12222334


Q ss_pred             cchhhhc--cccCCCCceEEEEecHHHHHHhhccc-------------------------cccC-CCchHHHHHHHHHHH
Q psy13322        118 PDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAA-------------------------HFNT-FGGNPVGCVIASTVL  169 (195)
Q Consensus       118 pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~-------------------------~~~t-~~~~p~~~~aa~aal  169 (195)
                      .|++++|  |.+++---+|++..+++..+.+....                         ...+ +..+.....+..++|
T Consensus       190 iD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL  269 (382)
T d2bkwa1         190 VDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVAL  269 (382)
T ss_dssp             CSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHH
T ss_pred             eeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHH
Confidence            6888886  99953222789999998766543210                         1122 234566778888899


Q ss_pred             Hhhcch---hHHHHHHHHHHHHHHHhh
Q psy13322        170 DVIKDE---ELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       170 ~~~~~~---~~~~~l~~~~~~l~~~L~  193 (195)
                      +.+.++   ...++.++..+++++.+.
T Consensus       270 ~~~~~~g~~~~~~~~~~l~~~l~~~l~  296 (382)
T d2bkwa1         270 KEILEEGLHKRWDLHREMSDWFKDSLV  296 (382)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHhh
Confidence            887543   444556667777777664

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=1.7e-05  Score=65.88  Aligned_cols=134  Identities=13%  Similarity=0.114  Sum_probs=86.4

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH----HcCCEEEEeccccCccccCCCcccccccCC
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIK----SNNGLFISDEVQTGFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~----~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  116 (195)
                      +++++.++     ++.++|++|++-+....++.    +++++++++    ++|+++|+|.....-       ..+..+..
T Consensus       129 ~~~~~~i~-----~~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~lvVDnT~atP-------~~~~Pl~~  192 (393)
T d1n8pa_         129 NDLPQLIK-----ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSP-------YISNPLNF  192 (393)
T ss_dssp             HHHHHHSC-----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHH-------HHCCGGGG
T ss_pred             HHHHHHhh-----hhcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCceEEEecCccCc-------ccCCchhh
Confidence            45666554     48889999999988887777    999999998    788999999885421       11111223


Q ss_pred             Ccchhhh--ccccCC-C-CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy13322        117 SPDIVTM--AKGIAN-G-FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGY  191 (195)
Q Consensus       117 ~pdi~~~--sK~l~~-G-~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~  191 (195)
                      -.||++-  .|.++| | .-+|+++.+ +++.+.+...........+|..+...+..|+.+.  -.+++-.+|...+.+.
T Consensus       193 GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~Tl~--lR~~~~~~nA~~lA~~  270 (393)
T d1n8pa_         193 GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLH--LRVRQAALSANKIAEF  270 (393)
T ss_dssp             TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcchh--hHHHHHHHHHHHHHHH
Confidence            3466654  599984 3 566776654 5676666544322233447887777777777653  2344555555555555


Q ss_pred             h
Q psy13322        192 L  192 (195)
Q Consensus       192 L  192 (195)
                      |
T Consensus       271 L  271 (393)
T d1n8pa_         271 L  271 (393)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.02  E-value=1.6e-05  Score=64.41  Aligned_cols=134  Identities=21%  Similarity=0.202  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc--CCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT--GDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~--G~~~~~~~~~~~~  117 (195)
                      +++|++.+.     +++++||+--++   |....    +++|.++|++||+.||.|.+|+ +|-.  |. .  ...+|. 
T Consensus       109 ~~~l~~~i~-----~~tkaIi~~h~~---G~~~~----~~~i~~i~~~~~i~vIeD~a~a-~g~~~~~~-~--~g~~g~-  171 (376)
T d1mdoa_         109 PEHIEAAIT-----PQTKAIIPVHYA---GAPAD----LDAIYALGERYGIPVIEDAAHA-TGTSYKGR-H--IGARGT-  171 (376)
T ss_dssp             HHHHHHHCC-----TTEEEECCBCGG---GCCCC----HHHHHHHHHHHTCCBCEECTTC-TTCEETTE-E--TTSSSE-
T ss_pred             HHHHHHhcC-----CCCeEEEEeCCC---CCccc----hhHHHHHHHhcCceEEeccchh-ccCeeCCe-e--cccccC-
Confidence            678888776     367788765444   54454    8899999999999999999998 5421  21 1  111121 


Q ss_pred             cchhhh--ccccCCCCceEEEEecH-HHHHHhhccc------------------------cccCCCchHHHHHHHHHHHH
Q psy13322        118 PDIVTM--AKGIANGFPMGAVVTTT-EIAQVLTKAA------------------------HFNTFGGNPVGCVIASTVLD  170 (195)
Q Consensus       118 pdi~~~--sK~l~~G~~~g~v~~~~-~i~~~l~~~~------------------------~~~t~~~~p~~~~aa~aal~  170 (195)
                       .+..|  +|.+++|- .|++++++ ++.+.+....                        .+..+..+.+.++.++.-|+
T Consensus       172 -~~~Sf~~~K~l~~g~-GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~  249 (376)
T d1mdoa_         172 -AIFSFHAIKNITCAE-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ  249 (376)
T ss_dssp             -EEEECCTTSSSCSSS-CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH
T ss_pred             -ccccCCCcCCCCCCC-CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhh
Confidence             22233  38887432 46677654 5655543221                        12233345666666666666


Q ss_pred             hhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        171 VIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       171 ~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .+  ++..++-+++.+++.+.|+.
T Consensus       250 ~~--~~~~~~r~~~~~~~~~~L~~  271 (376)
T d1mdoa_         250 KL--DALNARRAAIAAQYHQAMAD  271 (376)
T ss_dssp             TH--HHHHHHHHHHHHHHHHHHHT
T ss_pred             hh--hHHHHHHhhhhhhhhhhccc
Confidence            55  34566777777788777764

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=1.3e-05  Score=66.67  Aligned_cols=127  Identities=13%  Similarity=0.061  Sum_probs=81.9

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--CCEEEEeccccCccccCCCcccccccCCCcchhh--hccccCC
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--NGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVT--MAKGIAN  129 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~--~sK~l~~  129 (195)
                      +++++|++|++-+....+..    +++++++|+++  |+++|+|...+..    -   .+.-+.+-.||++  .+|.++|
T Consensus       142 ~~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~vVDnT~atP----~---~~~Pl~~GaDivvhS~TKy~~G  210 (391)
T d1cl1a_         142 PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAG----V---LFKALDFGIDVSIQAATKYLVG  210 (391)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTT----T---SSCGGGGTCSEEEEETTTTTTC
T ss_pred             cccceeeecccCcccccccc----cHHHHHHHHhccCCcEEEEeccccch----h---hhcccccccceEEeecchhccc
Confidence            47899999999888877776    99999999775  9999999886421    1   1222223346664  4599984


Q ss_pred             -C-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        130 -G-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       130 -G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                       | .-.|.+++++++.+.+........-..+|..+...+..|+.+.  -.+++..++...+.+.|+
T Consensus       211 hsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL~--lR~~~~~~nA~~vA~~L~  274 (391)
T d1cl1a_         211 HSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLG--VRLRQHHESSLKVAEWLA  274 (391)
T ss_dssp             SSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             cccccccceeccccccccchhhhhcccccCCchhhhhhhccchhHH--HHHHHHHHHHHHHHHHHH
Confidence             3 4567788887766665543322222346777776666666552  234555555656655554

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=97.94  E-value=2.6e-05  Score=63.33  Aligned_cols=127  Identities=13%  Similarity=0.015  Sum_probs=80.8

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHH-HHcCCEEEEeccccCccccCCCcccccccCCCcchhhh--ccccCC-
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELI-KSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM--AKGIAN-  129 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~-~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~--sK~l~~-  129 (195)
                      ++.+.|++|++.+....++.    ++.+.+++ +++|+++|+|...+..       ..+.....-.||++-  +|.++| 
T Consensus        82 ~~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~atp-------~~~~pl~~GaDiVv~S~TKy~~Gh  150 (331)
T d1pffa_          82 PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-------ILTNPLDLGVDIVVHSATKYINGH  150 (331)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-------HHCCGGGGTCSEEEEETTTTTSSS
T ss_pred             cccceeeeeccccccccccc----chhhhhhhhcccCceEEeecccccc-------ccccccccCCCEEEecchhhcCCC
Confidence            47889999999988877776    88888875 6789999999875421       112222233576655  599985 


Q ss_pred             C-CceEEEEecHHHHHHhhccccc--cCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        130 G-FPMGAVVTTTEIAQVLTKAAHF--NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       130 G-~~~g~v~~~~~i~~~l~~~~~~--~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      | .-+|+++++++...........  .....+|..+...+..++.+..  .+++..+|...+.+.|+
T Consensus       151 ~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~--Rm~~~~~nA~~lA~~L~  215 (331)
T d1pffa_         151 TDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKRAAENAQKVAEFLH  215 (331)
T ss_dssp             SSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred             CccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhh
Confidence            3 5678888887655443322211  2223478888877777776632  34445555555555543

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=97.94  E-value=9.8e-05  Score=61.16  Aligned_cols=135  Identities=12%  Similarity=0.051  Sum_probs=85.9

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-cCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS-NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD  119 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~-~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd  119 (195)
                      +.+++.++     ++..+|++|++-+....++.    ++++.+.+++ +|+++|+|...+.-    .   .+.-+.+-.|
T Consensus       135 ~~~~~~i~-----~~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~atP----~---~~~Pl~~GaD  198 (394)
T d1e5ea_         135 GEVKKHMK-----PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSP----M---ITNPVDFGVD  198 (394)
T ss_dssp             THHHHHCC-----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCT----T---TCCGGGGTCS
T ss_pred             HHHHHhhc-----ccccEEEEeccCCcceeeeh----hhhhhhccccccCeEEEecCcccCc----c---cCCchhcCCC
Confidence            45565554     47889999999998887777    8888876654 78999999875421    1   1222223346


Q ss_pred             hhh--hccccCC-C-CceEEEEecHHHHHHhhccccccCC--CchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322        120 IVT--MAKGIAN-G-FPMGAVVTTTEIAQVLTKAAHFNTF--GGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR  193 (195)
Q Consensus       120 i~~--~sK~l~~-G-~~~g~v~~~~~i~~~l~~~~~~~t~--~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~  193 (195)
                      |++  .+|.++| + .-.|+++++++.....+.......+  ..+|..+.-.+..|+.+.  -.+++..+|...+.+.|+
T Consensus       199 iVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL~--lRm~r~~~nA~~lA~~L~  276 (394)
T d1e5ea_         199 VVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN--IRMKAESENAMKVAEYLK  276 (394)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             EEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhHH--HHHHHHHHHHHHHHHHHh
Confidence            664  4699985 3 4678888888766654432222222  346787777777777653  234555556666665554

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=97.85  E-value=3.4e-05  Score=59.31  Aligned_cols=139  Identities=9%  Similarity=-0.016  Sum_probs=75.0

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCC-cccccccCCCcchhhhccccCCCC-c
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDN-YWGFEMHGVSPDIVTMAKGIANGF-P  132 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~-~~~~~~~~~~pdi~~~sK~l~~G~-~  132 (195)
                      ....+++....+++|. ..+.+.+..+.+.|.++|+++++|+++.+....... ............+.++++..+.+. .
T Consensus       130 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (340)
T d1svva_         130 VIPKLVYISNTTEVGT-QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFG  208 (340)
T ss_dssp             CEEEEEEEESSCTTSC-CCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSC
T ss_pred             Ccceeeeecccccccc-cccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCcccccccc
Confidence            4445555555565554 446677999999999999999999999754322211 111111111122334455555333 3


Q ss_pred             eEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        133 MGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       133 ~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .+................  ...+........+++++.++........++...+.+++.+.|++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  272 (340)
T d1svva_         209 EALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEA  272 (340)
T ss_dssp             EEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhc
Confidence            344444433322222211  23333334445555555554433455677788888888888765

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.85  E-value=6.2e-05  Score=63.52  Aligned_cols=141  Identities=15%  Similarity=0.169  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~  117 (195)
                      +.++++++.++.+|+    .||+-.  |..- +..+   +++++++|++.|++|++|=+|. |+.-.|. + ... +.. 
T Consensus       168 Dyd~l~~~a~~~kPk----lIi~G~--S~y~-r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~-~-~sP-l~~-  233 (470)
T d1rv3a_         168 DYDRLEENARLFHPK----LIIAGT--SCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGV-V-PSP-FEH-  233 (470)
T ss_dssp             CHHHHHHHHHHHCCS----EEEECC--SSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS-S-CCG-GGT-
T ss_pred             cHHHHHHHHHhhCcc----eEeech--hhcc-ccCC---HHHHHHHHhccCCeEEecchhhhhhccccc-c-CCh-hhe-
Confidence            378899998887664    566544  1122 2333   8999999999999999999995 5533443 2 111 222 


Q ss_pred             cchhhhc--cccCCCCceEEEEecH---------------HHHHHhhccccccCCCchHHHHHHHH-HHHHhhcc---hh
Q psy13322        118 PDIVTMA--KGIANGFPMGAVVTTT---------------EIAQVLTKAAHFNTFGGNPVGCVIAS-TVLDVIKD---EE  176 (195)
Q Consensus       118 pdi~~~s--K~l~~G~~~g~v~~~~---------------~i~~~l~~~~~~~t~~~~p~~~~aa~-aal~~~~~---~~  176 (195)
                      .|++|.+  |+|.| =+.|.+++++               ++.+.+....+..+.+++-+...||+ .++.....   .+
T Consensus       234 aDvvt~tTHKtlrG-PrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~  312 (470)
T d1rv3a_         234 CHVVTTTTHKTLRG-CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKE  312 (470)
T ss_dssp             CSEEEEESSGGGCC-CSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred             eeeeeeehhhhccC-CcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHH
Confidence            3888776  99973 3447777765               36666766666666666544444444 45555433   34


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy13322        177 LQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       177 ~~~~l~~~~~~l~~~L~~  194 (195)
                      ..+++-+|.+.|.+.|.+
T Consensus       313 Ya~qvv~NAk~La~~L~~  330 (470)
T d1rv3a_         313 YQRQVVANCRALSAALVE  330 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            556677777777777653

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=97.83  E-value=0.0002  Score=57.41  Aligned_cols=129  Identities=13%  Similarity=0.088  Sum_probs=80.3

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccCCCCce
Q psy13322         56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIANGFPM  133 (195)
Q Consensus        56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~~G~~~  133 (195)
                      ...|.+--+.+.+|.+.+    ++++.++|+++|+++++|-+|+ +|..-     +.......|++++|  |.++++--+
T Consensus       144 ~~~v~~~~~~~~tg~~~~----i~~i~~~~~~~g~~~~vDa~~~-~g~~~-----~~~~~~~~d~~~~s~~K~~~gp~g~  213 (377)
T d1vjoa_         144 PAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP-----IFLDAWGVDLAYSCSQKGLGCSPGA  213 (377)
T ss_dssp             CSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC-----CCTTTTTCSEEECCSSSTTCSCSSC
T ss_pred             ceeeeeeeeeccceeeec----hhhhhhhhhhccceEEEecchh-hhhhh-----hcccccccceeeecccccccCCCEE
Confidence            334555556677888888    8999999999999999999997 54321     22223455777665  766643346


Q ss_pred             EEEEecHHHHHHhhccc-------------------cccCC-CchHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHH
Q psy13322        134 GAVVTTTEIAQVLTKAA-------------------HFNTF-GGNPVGCVIASTVLDVIKD---EELQYNCKQVSAQIIG  190 (195)
Q Consensus       134 g~v~~~~~i~~~l~~~~-------------------~~~t~-~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~l~~  190 (195)
                      +.+..++...+......                   ...+. ..+...+.+..+++..+..   +...++.+++.+++.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~  293 (377)
T d1vjoa_         214 SPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWE  293 (377)
T ss_dssp             EEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhh
Confidence            77888887766543221                   11111 2233344444455554433   5566777777888887


Q ss_pred             Hhhc
Q psy13322        191 YLRV  194 (195)
Q Consensus       191 ~L~~  194 (195)
                      .|..
T Consensus       294 ~l~~  297 (377)
T d1vjoa_         294 RLED  297 (377)
T ss_dssp             HHHH
T ss_pred             hhhc
Confidence            7753

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.83  E-value=0.0002  Score=60.56  Aligned_cols=150  Identities=11%  Similarity=0.034  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-C
Q psy13322         40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-S  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~  117 (195)
                      .+.|++.|++....+ .+.+|+.-.-....|.+-+    |++|.++|++||+++-+|=++.|+...-..+ -....|+ .
T Consensus       219 ~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp----l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~-~~~~~gi~~  293 (476)
T d1js3a_         219 ASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEF-RHLLNGVEF  293 (476)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTT-GGGGTTGGG
T ss_pred             HHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc----HHHHHHHHHhcCcEEEEecccchhhhhhcch-hhhhcCCcc
Confidence            678888887542212 4556666666667788887    9999999999999999999988764332211 0111244 3


Q ss_pred             cchhhhc--cccCCCCceEEEEecHH--HHHHhhccc----------------cccCC-CchHHHHHHHHHHHHhhcc--
Q psy13322        118 PDIVTMA--KGIANGFPMGAVVTTTE--IAQVLTKAA----------------HFNTF-GGNPVGCVIASTVLDVIKD--  174 (195)
Q Consensus       118 pdi~~~s--K~l~~G~~~g~v~~~~~--i~~~l~~~~----------------~~~t~-~~~p~~~~aa~aal~~~~~--  174 (195)
                      .|.+++.  |.++.-+..|+++.++.  +...+....                ...|. ++-++.......+++.+..  
T Consensus       294 aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g  373 (476)
T d1js3a_         294 ADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKG  373 (476)
T ss_dssp             CSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHH
T ss_pred             cceeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhH
Confidence            5777774  98875566788888753  222211100                00111 1112223334455555433  


Q ss_pred             -hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 -EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 -~~~~~~l~~~~~~l~~~L~~  194 (195)
                       .+++++..++.++|.+.|++
T Consensus       374 ~~~~i~~~~~lA~~l~~~l~~  394 (476)
T d1js3a_         374 LQAYIRKHVQLSHEFEAFVLQ  394 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence             45667777888888888764

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=97.79  E-value=0.00015  Score=60.50  Aligned_cols=128  Identities=14%  Similarity=0.085  Sum_probs=79.9

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh--ccccCC-C
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM--AKGIAN-G  130 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~--sK~l~~-G  130 (195)
                      +++++|++|++-+....++.    +++|+++|+++|+++|+|...+.   +.  . .+..+.+-.||++-  +|.++| |
T Consensus       143 ~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a~---tP--~-~~~Pl~~GaDiVvhS~TKyl~GHs  212 (421)
T d2ctza1         143 EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGM---GG--Y-LLRPLAWGAALVTHSLTKWVGGHG  212 (421)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG---GG--T-SCCGGGGTCSEEEEETTTTTTCSS
T ss_pred             CCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceEecccccc---cc--e-eccccccCCcEEEEechhhccCCC
Confidence            48999999999998888777    99999999999999999988541   11  1 11222334566644  599985 3


Q ss_pred             -CceEEEEecHHH----------------------HHHhhc----------cccccCCCchHHHHHHHHHHHHhhcchhH
Q psy13322        131 -FPMGAVVTTTEI----------------------AQVLTK----------AAHFNTFGGNPVGCVIASTVLDVIKDEEL  177 (195)
Q Consensus       131 -~~~g~v~~~~~i----------------------~~~l~~----------~~~~~t~~~~p~~~~aa~aal~~~~~~~~  177 (195)
                       .-+|+++.+++.                      .+.+..          .........+|..+..++..|+.+.  -.
T Consensus       213 D~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~--lR  290 (421)
T d2ctza1         213 AVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLS--LR  290 (421)
T ss_dssp             CCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHH--HH
T ss_pred             CeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchh--hH
Confidence             456777754321                      111100          0011122347888877777777653  23


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy13322        178 QYNCKQVSAQIIGYLR  193 (195)
Q Consensus       178 ~~~l~~~~~~l~~~L~  193 (195)
                      +++-.++...+.+.|+
T Consensus       291 m~~~~~nA~~vA~~L~  306 (421)
T d2ctza1         291 AERHVENTLHLAHWLL  306 (421)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            4555566666666554

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.72  E-value=0.00011  Score=61.79  Aligned_cols=140  Identities=16%  Similarity=0.120  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCC
Q psy13322         39 FYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGV  116 (195)
Q Consensus        39 ~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~  116 (195)
                      +.++++++.++.+|+    .||+-. .+.    +..+   +++++++|++.|++|++|=+|. |+.-.|.  +... +..
T Consensus       164 Dyd~~~~~a~~~kPk----lIi~G~S~y~----r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~--~~sP-~~~  229 (463)
T d2a7va1         164 DYNQLALTARLFRPR----LIIAGTSAYA----RLID---YARMREVCDEVKAHLLADMAHISGLVAAKV--IPSP-FKH  229 (463)
T ss_dssp             CHHHHHHHHHHHCCS----EEEECCSSCC----SCCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTS--SCCG-GGT
T ss_pred             cHHHHHHHHhhcCCc----eEEecccccc----cccC---HHHHHHHhhcccceEEechhhhhHHhhhhh--hcCh-hhh
Confidence            478999999888664    566544 222    2333   8999999999999999999996 5533332  2211 233


Q ss_pred             Ccchhhhc--cccCCCCceEEEEecH---------------HHHHHhhccccccCCCchHHHHHHHH-HHHHhhcc---h
Q psy13322        117 SPDIVTMA--KGIANGFPMGAVVTTT---------------EIAQVLTKAAHFNTFGGNPVGCVIAS-TVLDVIKD---E  175 (195)
Q Consensus       117 ~pdi~~~s--K~l~~G~~~g~v~~~~---------------~i~~~l~~~~~~~t~~~~p~~~~aa~-aal~~~~~---~  175 (195)
                       .|++|.+  |+|.| =+.|.+++++               ++.+.+....+....+++-+...||+ .++....+   .
T Consensus       230 -aDvvt~tTHKTlrG-PrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk  307 (463)
T d2a7va1         230 -ADIVTTTTHKTLRG-ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFR  307 (463)
T ss_dssp             -CSEEEEESSGGGCS-CSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHH
T ss_pred             -hhhhhchhhhhhcC-CCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHH
Confidence             3888776  99974 3457777765               45566665555555555544444443 44444322   3


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      +..+++.+|.+.|.+.|.+
T Consensus       308 ~Ya~qVv~NAk~La~~L~~  326 (463)
T d2a7va1         308 EYSLQVLKNARAMADALLE  326 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            5566677777777777653

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=97.71  E-value=6.3e-05  Score=61.70  Aligned_cols=133  Identities=16%  Similarity=0.120  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc--CCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT--GDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~--G~~~~~~~~~~~~  117 (195)
                      .+.+++.+.     .++++|++..+.|.   ...    ++++.++|++|++.+|-|-+|+ +|-.  |+      ..|-.
T Consensus       112 ~~~~~~~i~-----~~tk~i~~~~~~g~---~~d----~~~i~~~~~~~~i~lieD~a~a-~ga~~~g~------~~g~~  172 (384)
T d1b9ha_         112 PEAVAAAVT-----PRTKVIMPVHMAGL---MAD----MDALAKISADTGVPLLQDAAHA-HGARWQGK------RVGEL  172 (384)
T ss_dssp             HHHHHHHCC-----TTEEEECCBCGGGC---CCC----HHHHHHHHHHHTCCBCEECTTC-TTCEETTE------EGGGS
T ss_pred             hhhhccccc-----cccccccccccccc---ccc----cccchhhhhhhhhhhhhhhcee-cccccCCE------ecCcc
Confidence            455666543     47888887777663   333    8899999999999999999998 4322  22      11223


Q ss_pred             cchhhh----ccccCCCCceEEEEecH-HHHHHhhccc-----------------cccCCCchHHHHHHHHHHHHhhcch
Q psy13322        118 PDIVTM----AKGIANGFPMGAVVTTT-EIAQVLTKAA-----------------HFNTFGGNPVGCVIASTVLDVIKDE  175 (195)
Q Consensus       118 pdi~~~----sK~l~~G~~~g~v~~~~-~i~~~l~~~~-----------------~~~t~~~~p~~~~aa~aal~~~~~~  175 (195)
                      .|+.++    +|.+++|- .|++++++ ++.+.++...                 .++.+-.+.+.++.++..|+.++  
T Consensus       173 g~~~~~Sf~~~K~i~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld--  249 (384)
T d1b9ha_         173 DSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--  249 (384)
T ss_dssp             SSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--
T ss_pred             cccceecccccccccccc-cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcc--
Confidence            355544    48887432 46777754 5555443210                 12233356777777777776653  


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      +..++-+++.+++.+.|+.
T Consensus       250 ~~~~~R~~~~~~y~~~L~~  268 (384)
T d1b9ha_         250 EQIAVRDERWTLLSRLLGA  268 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             cchhhhhhhhhhhhhhhhc
Confidence            4455566677777777654

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.48  E-value=0.00028  Score=57.24  Aligned_cols=82  Identities=15%  Similarity=0.167  Sum_probs=58.7

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccCCC-
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIANG-  130 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~~G-  130 (195)
                      ++++.|++-.+.+..|.+.+    +++|.++|+++|+++++|=+|+ +|...     +......+|++++|  |.+.+| 
T Consensus       163 ~~T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~~-----~~~~~~~~d~~~~s~~K~~~~~~  232 (404)
T d1qz9a_         163 QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP-----VDLHQAGADYAIGCTYKYLNGGP  232 (404)
T ss_dssp             TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC-----CCHHHHTCSEEEECSSSTTCCCT
T ss_pred             CCceEEEEecccccccceec----HHHHhccccccccceeEEeecc-ccccc-----cccccccceEEEEechhhcccCC
Confidence            47889999999999999998    9999999999999999999988 54321     11112345655554  776533 


Q ss_pred             CceEEEEecHHHHHH
Q psy13322        131 FPMGAVVTTTEIAQV  145 (195)
Q Consensus       131 ~~~g~v~~~~~i~~~  145 (195)
                      .-++++..++.+.+.
T Consensus       233 g~~g~~~~~~~~~~~  247 (404)
T d1qz9a_         233 GSQAFVWVSPQLCDL  247 (404)
T ss_dssp             TCCCEEEECTTTTTT
T ss_pred             ceEEEEEechhhhhh
Confidence            224666666665443

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=97.42  E-value=0.0015  Score=52.68  Aligned_cols=97  Identities=19%  Similarity=0.172  Sum_probs=63.6

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHcC--CEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC--CCCceEEEEec
Q psy13322         66 GVSGVKEFPRYFLRRAYELIKSNN--GLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA--NGFPMGAVVTT  139 (195)
Q Consensus        66 s~~G~~~~~~~~L~~l~~l~~~~~--~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~--~G~~~g~v~~~  139 (195)
                      +.+|.+.+    ++++.++|++|+  +++++|=+++ +|-..   ..++.+  ..|++++|  |+++  .|  +|.++.+
T Consensus       131 TstG~~~~----i~~i~~~~~~~~~~~l~~vDavss-~g~~~---i~~d~~--~iD~~~~~sqK~l~gppG--~~~v~~s  198 (348)
T d1iuga_         131 TSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVGE---VALEAM--GVDAAASGSQKGLMCPPG--LGFVALS  198 (348)
T ss_dssp             TTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTBC---CCSGGG--TCSEEEEESSSTTCCCSC--EEEEEEC
T ss_pred             hhhhhhcc----HHHHHHHHHhhhccceeechhhhc-ccccc---cccccc--cCCEEEeccccceecCCc--eeeeeec
Confidence            34677777    899999999985  7899998877 54221   122323  35777775  9994  57  7899999


Q ss_pred             HHHHHHhhccc-------------cccC-CCchHHHHHHHHHHHHhhcc
Q psy13322        140 TEIAQVLTKAA-------------HFNT-FGGNPVGCVIASTVLDVIKD  174 (195)
Q Consensus       140 ~~i~~~l~~~~-------------~~~t-~~~~p~~~~aa~aal~~~~~  174 (195)
                      ++..+.+....             ...+ +..+...+.+..++|+.+.+
T Consensus       199 ~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~  247 (348)
T d1iuga_         199 PRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLP  247 (348)
T ss_dssp             HHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGG
T ss_pred             hHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHH
Confidence            88777543311             1122 23455567777788887643

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=0.00058  Score=54.94  Aligned_cols=136  Identities=16%  Similarity=0.208  Sum_probs=81.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--CCEEEEeccccCccccCCCcccccccCCC
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--NGLFISDEVQTGFGRTGDNYWGFEMHGVS  117 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--~~llI~DEv~~g~gr~G~~~~~~~~~~~~  117 (195)
                      ++++++.+.     ++++.|++.-+.+.+|.+.+    ++.+.++++++  ++++++|.+|+ +|..-     .......
T Consensus       129 ~~~l~~~i~-----~~t~lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~~-----~d~~~~~  193 (376)
T d1eg5a_         129 LEELEKLVD-----EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP-----FSLEKLE  193 (376)
T ss_dssp             HHHHHHHCC-----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC-----CCCTTTC
T ss_pred             HHHHHHhcC-----CCceEEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeec-ccccc-----ccccccC
Confidence            466666654     47889999999999999888    88889988665  99999999987 54321     2212345


Q ss_pred             cchhhh--ccccC-CCCceEEEEecHHHHHHhhcccc-------ccCCCchHHHHHHHHHHHHhhc--chhHHHHHHHHH
Q psy13322        118 PDIVTM--AKGIA-NGFPMGAVVTTTEIAQVLTKAAH-------FNTFGGNPVGCVIASTVLDVIK--DEELQYNCKQVS  185 (195)
Q Consensus       118 pdi~~~--sK~l~-~G~~~g~v~~~~~i~~~l~~~~~-------~~t~~~~p~~~~aa~aal~~~~--~~~~~~~l~~~~  185 (195)
                      +|++++  .|.+| .|  .+++..+++.  .+.....       ......+......+.++.....  ............
T Consensus       194 ~D~~~~s~~K~~gp~G--~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (376)
T d1eg5a_         194 VDYASFSAHKFHGPKG--VGITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLR  269 (376)
T ss_dssp             CSEEEEEGGGGTSCTT--CEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             ccceecccceeecCCC--ceeEEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhh
Confidence            677665  49876 35  4555555442  1222111       0111223444444444444432  234455566666


Q ss_pred             HHHHHHhhc
Q psy13322        186 AQIIGYLRV  194 (195)
Q Consensus       186 ~~l~~~L~~  194 (195)
                      .++.+.|+.
T Consensus       270 ~~~~~~l~~  278 (376)
T d1eg5a_         270 SKLVSGLMN  278 (376)
T ss_dssp             HHHHHHHHT
T ss_pred             hhhcccccc
Confidence            777776653

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=97.39  E-value=0.0017  Score=52.04  Aligned_cols=92  Identities=18%  Similarity=0.203  Sum_probs=58.9

Q ss_pred             HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch
Q psy13322         41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI  120 (195)
Q Consensus        41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi  120 (195)
                      +..++.+...    ++..+.+--+-+.+|.+.+    ++++.++|+++|+++++|-+++ +|..     .+..-....|+
T Consensus       132 ~~~~~~~~~~----~~~~v~~~~~~t~tG~~~~----~~~i~~~~~~~~~~~~vD~~ss-~g~~-----pid~~~~~~d~  197 (388)
T d2ch1a1         132 ETLARAIELH----QPKCLFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCGV-----PFYMDKWEIDA  197 (388)
T ss_dssp             HHHHHHHHHH----CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB-----CCCTTTTTCCE
T ss_pred             hhhhhhhccC----Ccceeeeeecccccccccc----hhhhcchhccccceeeeeeeec-cccc-----ccchhccCceE
Confidence            3444444433    3445555555566788777    8889999999999999999988 4321     12222455677


Q ss_pred             hhhc--cccCCCCceEEEEecHHHHHHh
Q psy13322        121 VTMA--KGIANGFPMGAVVTTTEIAQVL  146 (195)
Q Consensus       121 ~~~s--K~l~~G~~~g~v~~~~~i~~~l  146 (195)
                      +++|  |.+++---+|.+..++...+..
T Consensus       198 ~~~s~~K~~~gp~G~g~~~~~~~~~~~~  225 (388)
T d2ch1a1         198 VYTGAQKVLGAPPGITPISISPKALDVI  225 (388)
T ss_dssp             EECCCC-CCCCCSSCEEEEECHHHHHHH
T ss_pred             EEEccccccCCCCeEEEEeccHHHHHhh
Confidence            7776  7675322367888887766544

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.29  E-value=0.0042  Score=49.76  Aligned_cols=125  Identities=16%  Similarity=0.148  Sum_probs=77.6

Q ss_pred             CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc----cccCCC
Q psy13322         55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA----KGIANG  130 (195)
Q Consensus        55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s----K~l~~G  130 (195)
                      ++.+|++--..|   ....    ++++.++|+++|+.||-|=+|+ +|-.   +.+ ...|-..|+.++|    |.+++|
T Consensus       111 ~~~aii~~~~~G---~~~d----~~~i~~~~~~~~i~vIED~a~a-~g~~---~~~-~~~G~~gd~~~fSf~~~K~l~tg  178 (374)
T d1o69a_         111 KPKALILTHLYG---NAAK----MDEIVEICKENDIVLIEDAAEA-LGSF---YKN-KALGTFGEFGVYSYNGNKIITTS  178 (374)
T ss_dssp             CCCEEEEECGGG---CCCC----HHHHHHHHHHTTCEEEEECTTC-TTCE---ETT-EETTSSSSEEEEECCTTSSSCCS
T ss_pred             cccccccccccc---chhh----hHHHHHHhhccCcchhhhhhhh-hcce---ECC-eecCCCCceEEEeccCccccccc
Confidence            566677665555   3333    8999999999999999999998 5321   101 1123344777664    999733


Q ss_pred             CceEEEEec-HHHHHHhhccc--------------cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322        131 FPMGAVVTT-TEIAQVLTKAA--------------HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       131 ~~~g~v~~~-~~i~~~l~~~~--------------~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~  194 (195)
                      = .|++++. +++++.+....              .++.+-.+.+.++.+++-|+.+.  +..++-+++.+++.+.|+.
T Consensus       179 e-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~--~~i~~r~~i~~~y~~~L~~  254 (374)
T d1o69a_         179 G-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGE  254 (374)
T ss_dssp             S-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTT
T ss_pred             c-ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhh--hhcchhHHHHHHHHhhccc
Confidence            1 3566654 56776654321              12334457788888888887664  3445555666666666643

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=97.10  E-value=0.0064  Score=48.73  Aligned_cols=126  Identities=17%  Similarity=0.121  Sum_probs=78.6

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc----cccCC
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA----KGIAN  129 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s----K~l~~  129 (195)
                      .++.+||+=-++|   ....    ++++.++|+++|+.||-|-+|+ +|-.=.    -...|-..|+.++|    |.+++
T Consensus       119 ~~t~avi~vh~~G---~~~~----~~~i~~~~~~~~i~lIEDaaqa-~Ga~~~----~~~~G~~g~~~~~Sf~~~K~l~~  186 (371)
T d2fnua1         119 ERTKAIVSVDYAG---KSVE----VESVQKLCKKHSLSFLSDSSHA-LGSEYQ----NKKVGGFALASVFSFHAIKPITT  186 (371)
T ss_dssp             TTEEEEEEECGGG---CCCC----HHHHHHHHHHHTCEEEEECTTC-TTCEET----TEETTSSSSEEEEECCTTSSSCC
T ss_pred             chhhccccccccc---cccc----cccccccccccchhhccchhhc-cCceec----cccCCcccccccccccccccccc
Confidence            3677777666655   4444    8899999999999999999998 542100    11224444665554    88874


Q ss_pred             CCceEEEEecH-HHHHHhhccc----------------cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322        130 GFPMGAVVTTT-EIAQVLTKAA----------------HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL  192 (195)
Q Consensus       130 G~~~g~v~~~~-~i~~~l~~~~----------------~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L  192 (195)
                      |- .|++++++ ++.+.+....                .++.+-.+.+.++.++.-|+.++  +..++-+++.+++.+.|
T Consensus       187 g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~--~~~~~R~~~~~~y~~~l  263 (371)
T d2fnua1         187 AE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAP--FLMQKREEAALTYDRIF  263 (371)
T ss_dssp             SS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHH
T ss_pred             cc-ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhcc--chhhhhhhhhhhhcccc
Confidence            32 47777764 5666654321                12334456788887887777664  34455556666666666


Q ss_pred             hc
Q psy13322        193 RV  194 (195)
Q Consensus       193 ~~  194 (195)
                      +.
T Consensus       264 ~~  265 (371)
T d2fnua1         264 KD  265 (371)
T ss_dssp             TT
T ss_pred             cc
Confidence            53

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.0015  Score=54.50  Aligned_cols=144  Identities=12%  Similarity=-0.023  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH------HHHcCCEEEEeccccCccc--cCCCcccc
Q psy13322         40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYEL------IKSNNGLFISDEVQTGFGR--TGDNYWGF  111 (195)
Q Consensus        40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l------~~~~~~llI~DEv~~g~gr--~G~~~~~~  111 (195)
                      .+.|++.++     .++++|++--.....|.+-+    ++++.++      |+++|+++-+|=+++|+-.  .-. ... 
T Consensus       189 ~~~L~~~i~-----~~t~~Vv~t~gtt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~-~~~-  257 (450)
T d1pmma_         189 PKRMIEACD-----ENTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP-DIV-  257 (450)
T ss_dssp             HHHHHHHCC-----TTEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT-TCC-
T ss_pred             HHHHHHHhh-----hCceEEEeeeeeccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhccceeeeech-hhh-
Confidence            577777665     36667776666666776665    4444444      5678999999999887521  111 000 


Q ss_pred             cccCC-Ccchhhhc--cccCCCCceEEEEecHHH-H-HHhhcc-----c--cccCC--CchHHHHHHHHHHHHhhcc---
Q psy13322        112 EMHGV-SPDIVTMA--KGIANGFPMGAVVTTTEI-A-QVLTKA-----A--HFNTF--GGNPVGCVIASTVLDVIKD---  174 (195)
Q Consensus       112 ~~~~~-~pdi~~~s--K~l~~G~~~g~v~~~~~i-~-~~l~~~-----~--~~~t~--~~~p~~~~aa~aal~~~~~---  174 (195)
                      -..++ ..|.++++  |.+.+-+.+|+++.++.- . ..+...     .  ...+.  +.+.....+..+++..+..   
T Consensus       258 ~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~  337 (450)
T d1pmma_         258 WDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGY  337 (450)
T ss_dssp             CSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHH
Confidence            01133 45777776  866655668899987642 1 111110     0  11122  2233344445555555433   


Q ss_pred             hhHHHHHHHHHHHHHHHhhc
Q psy13322        175 EELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       175 ~~~~~~l~~~~~~l~~~L~~  194 (195)
                      .+..++..++.++|.+.|++
T Consensus       338 ~~~~~~~~~la~~l~~~L~~  357 (450)
T d1pmma_         338 TKVQNASYQVAAYLADEIAK  357 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            56778888899999999875

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=92.77  E-value=0.73  Score=37.61  Aligned_cols=130  Identities=15%  Similarity=0.162  Sum_probs=72.8

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh-ccccC----
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM-AKGIA----  128 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~-sK~l~----  128 (195)
                      +++|+|++... +..|.+-.    ++++.+++++.|+++|+|=-...++..-    ....+  -.||++. +|.||    
T Consensus       195 ~~~Aavmi~~P-nt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al~~l~----~Pg~~--GaDi~~g~~q~fg~p~g  263 (437)
T d1wyua1         195 EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLSLGVLK----PPGAY--GADIAVGDGQSLGLPMG  263 (437)
T ss_dssp             TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGGTBC----CHHHH--TCSEEEEECTTTTCCCG
T ss_pred             cceeEEEEccc-cccccccc----hHHHHHHhhhccceEEeeechhhhhccc----ccccc--ccceEeeccceeccccC
Confidence            57999988876 44576542    7899999999999888763221121110    11112  2355533 35443    


Q ss_pred             -CCCceEEEEecHHHHHHhhcc-----------------------------ccccCCCchHHHHHHHHHHHHhhcc---h
Q psy13322        129 -NGFPMGAVVTTTEIAQVLTKA-----------------------------AHFNTFGGNPVGCVIASTVLDVIKD---E  175 (195)
Q Consensus       129 -~G~~~g~v~~~~~i~~~l~~~-----------------------------~~~~t~~~~p~~~~aa~aal~~~~~---~  175 (195)
                       ||=..|++.+++++...+...                             ..++...++.+.+..+..-+..+-.   .
T Consensus       264 ~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~  343 (437)
T d1wyua1         264 FGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLR  343 (437)
T ss_dssp             GGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHH
Confidence             232367888888776655321                             0111223333333333344444433   3


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q psy13322        176 ELQYNCKQVSAQIIGYLRV  194 (195)
Q Consensus       176 ~~~~~l~~~~~~l~~~L~~  194 (195)
                      +.-++...+..|+.++|.+
T Consensus       344 ~ia~~a~~~A~yl~~~L~~  362 (437)
T d1wyua1         344 EVALKSVEMAHKLHALLLE  362 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            4556777888899998875

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=91.08  E-value=0.026  Score=44.44  Aligned_cols=45  Identities=9%  Similarity=0.034  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccC
Q psy13322         78 LRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIA  128 (195)
Q Consensus        78 L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~  128 (195)
                      ++++.++|++||+++++|-|++ +|.  .   .+....+..|+.+.+|.++
T Consensus       155 ~~~i~~~~~~~~al~~vDavss-~g~--~---~id~~~~di~~~s~~k~~~  199 (361)
T d2c0ra1         155 GAQFKAFPDTGSVPLIGDMSSD-ILS--R---PFDLNQFGLVYAGAQKNLG  199 (361)
T ss_dssp             TEECSSCCCCTTSCEEEECTTT-TTS--S---CCCGGGCSEEEEETTTTTC
T ss_pred             cceEEEeeccCCceEEEEeecc-ccc--c---ccccccceeEEEecccccc
Confidence            4456689999999999999987 432  1   2222234556677778887

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=90.62  E-value=0.043  Score=42.87  Aligned_cols=70  Identities=7%  Similarity=-0.065  Sum_probs=42.9

Q ss_pred             EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCceEEEE
Q psy13322         58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVV  137 (195)
Q Consensus        58 avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~g~v~  137 (195)
                      .+.++.+.   |...+    ++++.++|+++|+++|+|=+++ +|-.   ..-+.  .+.-|+.+++|.++.+-..+.++
T Consensus       142 ~~~~~~~t---g~~~~----~~~i~~~~~~~g~l~ivDavqs-~g~~---~id~~--~~~vd~~~~~~~k~~~~~~~~~~  208 (360)
T d1w23a_         142 DAYLHITS---NNTIY----GTQYQNFPEINHAPLIADMSSD-ILSR---PLKVN--QFGMIYAGAQKNLGPSGVTVVIV  208 (360)
T ss_dssp             EEEEEEES---EETTT----TEECSSCCCCCSSCEEEECTTT-TTSS---CCCGG--GCSEEEEETTTTTSCTTCEEEEE
T ss_pred             cceeEecC---Ccccc----ceeeeeccccceeeEEeecccc-cccc---ccccc--cccceEEeeccccccCCcceeeE
Confidence            45555554   44444    6677899999999999999988 4321   11223  34457778887776322244444


Q ss_pred             ecH
Q psy13322        138 TTT  140 (195)
Q Consensus       138 ~~~  140 (195)
                      .++
T Consensus       209 ~~~  211 (360)
T d1w23a_         209 KKD  211 (360)
T ss_dssp             EHH
T ss_pred             ech
Confidence            443

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=81.94  E-value=8  Score=31.35  Aligned_cols=132  Identities=17%  Similarity=0.080  Sum_probs=72.5

Q ss_pred             CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh--ccccC---
Q psy13322         54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM--AKGIA---  128 (195)
Q Consensus        54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~--sK~l~---  128 (195)
                      ++++++++......++....    .+.+.+++++++..+++|=+--.. -.|.  .....+  -.|+++.  ++.||   
T Consensus       201 ~~~a~v~v~~p~~~g~~e~~----~~~~~~~~h~~g~~~~~~~~~~~~-~~~l--~~p~~~--g~div~vg~~q~~G~P~  271 (471)
T d1wyub1         201 PHVAALMLTNPNTLGLFERR----ILEISRLCKEAGVQLYYDGANLNA-IMGW--ARPGDM--GFDVVHLNLHKTFTVPH  271 (471)
T ss_dssp             TTEEEEEECSSCTTSCCCTT----HHHHHHHHHHHTCEEEEEGGGGGG-TTTT--CCHHHH--TCSEEECCTTTTTCCCC
T ss_pred             ccccceeeccCCCcccccch----hhhhHHHHHhccccccccccchhh-hhhc--cccCcc--ccccccccccccccccc
Confidence            58889988887665543333    778889999999888776432211 1111  000001  1133333  35453   


Q ss_pred             -CCCc-eEEEEecHHHHHHhhcc----------------cc---ccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHH
Q psy13322        129 -NGFP-MGAVVTTTEIAQVLTKA----------------AH---FNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQV  184 (195)
Q Consensus       129 -~G~~-~g~v~~~~~i~~~l~~~----------------~~---~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~  184 (195)
                       +|-| +|++.++++++..+...                .|   ..+.+++.+...+|...+..+-.   .++-+...++
T Consensus       272 ~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~  351 (471)
T d1wyub1         272 GGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLN  351 (471)
T ss_dssp             TTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence             2334 67888888877665311                01   11122333433344444455544   4556778888


Q ss_pred             HHHHHHHhhc
Q psy13322        185 SAQIIGYLRV  194 (195)
Q Consensus       185 ~~~l~~~L~~  194 (195)
                      ..|+.++|+.
T Consensus       352 A~Yla~~L~~  361 (471)
T d1wyub1         352 ARYLKELLKE  361 (471)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            8999988853