Psyllid ID: psy13327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MLHLPECESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATLLPSATA
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mlhlpeceseegwsAQRESNILALLKVIRSlvtpgnpaqvVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHenqehfanvyapsdppRQAIVVLLMSMVnqkqsyplrcsVLYCFLCYLYRNENNQAKIIATLLPSATA
Flexible Loop (DISEMBL)
mlhlpeceseegwsAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATLLPSATA
Low Complexity Region (SEG)
MLHLPECESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATLLPSATA
Disordered region (IsUnstruct)
*******************NILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATLL*****
Disordered Region (DISOPRED)
******C****GWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIA*LLP****
Disordered Region (DISEMBL)
***************QRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATLLPSATA
Disordered Region (DISPRO)
*L***E**SEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATLLP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLHLPECESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATLLPSATA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q9Z1Z0	959	General vesicular transpo	yes	N/A	0.941	0.151	0.579	6e-45
P41542	959	General vesicular transpo	yes	N/A	0.915	0.147	0.588	1e-44
P41541	961	General vesicular transpo	yes	N/A	0.915	0.146	0.581	3e-44
O60763	962	General vesicular transpo	yes	N/A	0.915	0.146	0.581	4e-44

>sp|Q9Z1Z0|USO1_MOUSE General vesicular transport factor p115 OS=Mus musculus GN=Uso1 PE=1 SV=2

 Score =  179 bits (454), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 84/145 (57%), Positives = 110/145 (75%)

Query: 8   ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
           E   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA G+P
Sbjct: 267 EENSGWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGIP 326

Query: 68  ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
           A ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct: 327 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386

Query: 128 YCFLCYLYRNENNQAKIIATLLPSA 152
           YCF C+LY+NE  Q +I+ATLLPS 
Sbjct: 387 YCFQCFLYKNEKGQGEIVATLLPST 411

General vesicular transport factor required for intercisternal transport in the Golgi stack; it is required for transcytotic fusion and/or subsequent binding of the vesicles to the target membrane. May well act as a vesicular anchor by interacting with the target membrane and holding the vesicular and target membranes in proximity.
Mus musculus (taxid: 10090)

>sp|P41542|USO1_RAT General vesicular transport factor p115 OS=Rattus norvegicus GN=Uso1 PE=1 SV=1

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 109/141 (77%)

Query: 12  GWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACIL 71
           GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA G+PA IL
Sbjct: 271 GWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGIPADIL 330

Query: 72  TETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL 131
           TETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VLYCF 
Sbjct: 331 TETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ 390

Query: 132 CYLYRNENNQAKIIATLLPSA 152
           C+LY+NE  Q +I+ATLLPS 
Sbjct: 391 CFLYKNEKGQGEIVATLLPST 411

General vesicular transport factor required for intercisternal transport in the Golgi stack; it is required for transcytotic fusion and/or subsequent binding of the vesicles to the target membrane. May well act as a vesicular anchor by interacting with the target membrane and holding the vesicular and target membranes in proximity.

Rattus norvegicus (taxid: 10116)

>sp|P41541|USO1_BOVIN General vesicular transport factor p115 OS=Bos taurus GN=USO1 PE=1 SV=1

 Score =  177 bits (448), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 109/141 (77%)

Query: 12  GWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACIL 71
           GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA GVPA IL
Sbjct: 271 GWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330

Query: 72  TETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL 131
           TETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VLYCF 
Sbjct: 331 TETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ 390

Query: 132 CYLYRNENNQAKIIATLLPSA 152
           C+LY+N+  Q +I++TLLPS 
Sbjct: 391 CFLYKNQKGQGEIVSTLLPST 411

General vesicular transport factor required for intercisternal transport in the Golgi stack; it is required for transcytotic fusion and/or subsequent binding of the vesicles to the target membrane. May well act as a vesicular anchor by interacting with the target membrane and holding the vesicular and target membranes in proximity.

Bos taurus (taxid: 9913)

>sp|O60763|USO1_HUMAN General vesicular transport factor p115 OS=Homo sapiens GN=USO1 PE=1 SV=2

 Score =  176 bits (447), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 109/141 (77%)

Query: 12  GWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACIL 71
           GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA GVPA IL
Sbjct: 271 GWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330

Query: 72  TETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL 131
           TETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VLYCF 
Sbjct: 331 TETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ 390

Query: 132 CYLYRNENNQAKIIATLLPSA 152
           C+LY+N+  Q +I++TLLPS 
Sbjct: 391 CFLYKNQKGQGEIVSTLLPST 411

General vesicular transport factor required for intercisternal transport in the Golgi stack; it is required for transcytotic fusion and/or subsequent binding of the vesicles to the target membrane. May well act as a vesicular anchor by interacting with the target membrane and holding the vesicular and target membranes in proximity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
241114858	753	vesicle docking protein P115, putative [	0.935	0.191	0.652	5e-49
442759135	802	Putative er-golgi vesicle-tethering prot	0.935	0.179	0.652	5e-49
427782027	839	Putative er-golgi vesicle-tethering prot	0.909	0.166	0.671	9e-49
91088529	791	PREDICTED: similar to vesicle docking pr	0.993	0.193	0.588	2e-47
242018354	848	dp115 protein, putative [Pediculus human	0.967	0.175	0.583	2e-47
66534871	838	PREDICTED: general vesicular transport f	0.915	0.168	0.617	6e-46
380019104	1056	PREDICTED: LOW QUALITY PROTEIN: general	0.915	0.133	0.617	1e-45
340711057	838	PREDICTED: general vesicular transport f	0.915	0.168	0.624	1e-45
350405956	838	PREDICTED: general vesicular transport f	0.909	0.167	0.628	1e-45
357629108	806	putative vesicle docking protein P115 [D	0.974	0.186	0.56	1e-45

>gi|241114858|ref|XP_002400475.1| vesicle docking protein P115, putative [Ixodes scapularis] gi|215493087|gb|EEC02728.1| vesicle docking protein P115, putative [Ixodes scapularis]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 94/144 (65%), Positives = 118/144 (81%)

Query: 9   SEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPA 68
           S++GWSAQ+ SNI  +L+V+RSLV+P +P  V SSCQ  +  SG+L  L N+LMA+GVPA
Sbjct: 250 SQQGWSAQKVSNIFHMLQVVRSLVSPSSPLNVTSSCQKAMNQSGLLEQLANILMASGVPA 309

Query: 69  CILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLY 128
            ILTETINTVAE+IR +H NQE+FA+V APS PPR AIVVLLMSMVN+KQ + LRC+VLY
Sbjct: 310 DILTETINTVAEVIRGHHNNQEYFASVNAPSSPPRPAIVVLLMSMVNEKQPFVLRCAVLY 369

Query: 129 CFLCYLYRNENNQAKIIATLLPSA 152
           CF C+LY+NE  QA+II TLLP++
Sbjct: 370 CFQCFLYKNELGQAQIIQTLLPTS 393

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442759135|gb|JAA71726.1| Putative er-golgi vesicle-tethering protein [Ixodes ricinus]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 94/144 (65%), Positives = 118/144 (81%)

Query: 9   SEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPA 68
           S++GWSAQ+ SNI  +L+V+RSLV+P +P  V SSCQ  +  SG+L  L N+LMA+GVPA
Sbjct: 286 SQQGWSAQKVSNIFHMLQVVRSLVSPSSPLNVTSSCQKAMNQSGLLEQLANILMASGVPA 345

Query: 69  CILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLY 128
            ILTETINTVAE+IR +H NQE+FA+V APS PPR AIVVLLMSMVN+KQ + LRC+VLY
Sbjct: 346 DILTETINTVAEVIRGHHNNQEYFASVNAPSSPPRPAIVVLLMSMVNEKQPFVLRCAVLY 405

Query: 129 CFLCYLYRNENNQAKIIATLLPSA 152
           CF C+LY+NE  QA+II TLLP++
Sbjct: 406 CFQCFLYKNELGQAQIIQTLLPTS 429

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427782027|gb|JAA56465.1| Putative er-golgi vesicle-tethering protein [Rhipicephalus pulchellus]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 94/140 (67%), Positives = 114/140 (81%)

Query: 12  GWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACIL 71
           GWSAQ+ SNI  +L+V+RSLV+P  P  V SSCQ  +  SG+L  LCN+LMA GVPA IL
Sbjct: 225 GWSAQKVSNIFHMLQVVRSLVSPTAPLNVTSSCQKAMNQSGLLEQLCNILMAIGVPADIL 284

Query: 72  TETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL 131
           TETINTVAE+IR +H NQE+FA+V APS+PPR AIVVLLMSMVN+KQ + LRC+VLYCF 
Sbjct: 285 TETINTVAEVIRGHHSNQEYFASVNAPSNPPRPAIVVLLMSMVNEKQPFVLRCAVLYCFQ 344

Query: 132 CYLYRNENNQAKIIATLLPS 151
           C+LY+NE  QA+II TLLP+
Sbjct: 345 CFLYKNELGQAQIIQTLLPT 364

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088529|ref|XP_972184.1| PREDICTED: similar to vesicle docking protein P115 [Tribolium castaneum] gi|270012234|gb|EFA08682.1| hypothetical protein TcasGA2_TC006352 [Tribolium castaneum]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/153 (58%), Positives = 121/153 (79%)

Query: 1   MLHLPECESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNL 60
           M  LP+   E GWS Q+ SN+  +L+++R+LV+P NP Q+V+SCQ  ++ + +L +LCN+
Sbjct: 266 MFILPDNLEEVGWSPQKVSNMHCVLQLVRTLVSPTNPVQIVTSCQKTMRNANLLEALCNI 325

Query: 61  LMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSY 120
           LMA+GVPA ILTETINTV E+IR N  NQE+FA V APS+PPR AIVVLLMSMVN+KQ +
Sbjct: 326 LMASGVPADILTETINTVGEVIRGNLTNQEYFAGVMAPSNPPRPAIVVLLMSMVNEKQPF 385

Query: 121 PLRCSVLYCFLCYLYRNENNQAKIIATLLPSAT 153
            LRC+VLYCF C+L++NE  Q +++ TLLPS+T
Sbjct: 386 TLRCAVLYCFQCFLFKNEIGQEQVVQTLLPSST 418

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018354|ref|XP_002429642.1| dp115 protein, putative [Pediculus humanus corporis] gi|212514627|gb|EEB16904.1| dp115 protein, putative [Pediculus humanus corporis]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 118/149 (79%)

Query: 5   PECESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAA 64
           P+    + W+ QR +N+  +LKV+R+LV+P NP Q+ +SCQ +++ SG+L +LC++LMA+
Sbjct: 275 PDGSDYDNWTTQRVANVHCMLKVLRALVSPSNPTQITNSCQVIMKSSGLLEALCSVLMAS 334

Query: 65  GVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRC 124
           GVPA ILTETINTVAE+IR N  NQE+F+ V APS PPR  IVVLLMSMVN+KQ + LRC
Sbjct: 335 GVPADILTETINTVAEVIRGNFSNQEYFSGVMAPSTPPRPVIVVLLMSMVNEKQPFLLRC 394

Query: 125 SVLYCFLCYLYRNENNQAKIIATLLPSAT 153
           SVLYCF C+L++NE  QA+++ TLLPS +
Sbjct: 395 SVLYCFQCFLFKNEFGQAQLVQTLLPSTS 423

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66534871|ref|XP_395962.2| PREDICTED: general vesicular transport factor p115 [Apis mellifera]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 112/141 (79%)

Query: 12  GWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACIL 71
            WS+Q+ SN+  +++VIR+LV P  PAQ VS+CQ +++  G+L +LCN+LMA+GVPA +L
Sbjct: 279 AWSSQKVSNVHCMVQVIRALVAPSGPAQAVSNCQRIMKACGLLQALCNILMASGVPADVL 338

Query: 72  TETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL 131
           TETINTVAE+IR N  NQE  A V APS+PPR AIVVLLMSMVN+KQ + LRCSVLYCF 
Sbjct: 339 TETINTVAEVIRGNSNNQEFLAGVMAPSNPPRPAIVVLLMSMVNEKQPFALRCSVLYCFQ 398

Query: 132 CYLYRNENNQAKIIATLLPSA 152
           C+LY+NE  Q+++I TLLP  
Sbjct: 399 CFLYKNEIGQSQLIQTLLPQG 419

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019104|ref|XP_003693455.1| PREDICTED: LOW QUALITY PROTEIN: general vesicular transport factor p115-like [Apis florea]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 111/141 (78%)

Query: 12  GWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACIL 71
            WS Q+ SN+  +++VIR+LV P  PAQ VS+CQ +++  G+L +LCN+LMA+GVPA +L
Sbjct: 279 AWSPQKVSNVHCMVQVIRALVAPSGPAQAVSNCQRIMKACGLLQALCNILMASGVPADVL 338

Query: 72  TETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL 131
           TETINTVAE+IR N  NQE  A V APS+PPR AIVVLLMSMVN+KQ + LRCSVLYCF 
Sbjct: 339 TETINTVAEVIRGNSNNQEFLAGVMAPSNPPRPAIVVLLMSMVNEKQPFALRCSVLYCFQ 398

Query: 132 CYLYRNENNQAKIIATLLPSA 152
           C+LY+NE  Q+++I TLLP  
Sbjct: 399 CFLYKNEIGQSQLIQTLLPQG 419

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711057|ref|XP_003394098.1| PREDICTED: general vesicular transport factor p115-like [Bombus terrestris]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 109/141 (77%)

Query: 12  GWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACIL 71
            WS Q+ SNI  +++VIR+LVTP   AQ VS+CQ +++  G+L +LCN+LMA GVPA +L
Sbjct: 279 AWSPQKVSNIHCMVQVIRALVTPSGSAQAVSNCQHIMRACGLLQALCNILMANGVPADVL 338

Query: 72  TETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL 131
           TETINTVAE+IR N  NQE  A V APS+PPR AIVVLLMSMVN+KQ + LRCSVLYCF 
Sbjct: 339 TETINTVAEVIRGNSSNQEFLAGVMAPSNPPRPAIVVLLMSMVNEKQPFALRCSVLYCFQ 398

Query: 132 CYLYRNENNQAKIIATLLPSA 152
           C+LY+NE  Q ++I TLLP  
Sbjct: 399 CFLYKNETGQTQLIQTLLPQG 419

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405956|ref|XP_003487607.1| PREDICTED: general vesicular transport factor p115-like [Bombus impatiens]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/140 (62%), Positives = 109/140 (77%)

Query: 13  WSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILT 72
           WS Q+ SNI  +++VIR+LVTP   AQ VS+CQ +++  G+L +LCN+LMA GVPA +LT
Sbjct: 280 WSPQKVSNIHCMVQVIRALVTPSGSAQAVSNCQHIMRACGLLQALCNILMANGVPADVLT 339

Query: 73  ETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLC 132
           ETINTVAE+IR N  NQE  A V APS+PPR AIVVLLMSMVN+KQ + LRCSVLYCF C
Sbjct: 340 ETINTVAEVIRGNSSNQEFLAGVMAPSNPPRPAIVVLLMSMVNEKQPFALRCSVLYCFQC 399

Query: 133 YLYRNENNQAKIIATLLPSA 152
           +LY+NE  Q ++I TLLP  
Sbjct: 400 FLYKNETGQTQLIQTLLPQG 419

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357629108|gb|EHJ78087.1| putative vesicle docking protein P115 [Danaus plexippus]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 116/150 (77%)

Query: 1   MLHLPECESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNL 60
           M ++PE   E GWS Q+  N+  +L+++R+LV+P N  Q++SSCQ +++  G+L +LCN+
Sbjct: 265 MFNIPENSEEVGWSPQKVVNVHCMLQLVRTLVSPSNSIQIISSCQKIMKNVGLLDALCNI 324

Query: 61  LMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSY 120
           LMA+GVPA ILTETINTV E++R +  NQ+   NV APS PPR AI+VLLMSMVN+KQ +
Sbjct: 325 LMASGVPADILTETINTVGEVVRGDATNQDFIGNVIAPSYPPRPAIIVLLMSMVNEKQPF 384

Query: 121 PLRCSVLYCFLCYLYRNENNQAKIIATLLP 150
            LRC+VLYCF CYLY NE++Q+ ++ TLLP
Sbjct: 385 ALRCAVLYCFQCYLYHNESSQSNLVQTLLP 414

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
FB|FBgn0040087	837	p115 "p115" [Drosophila melano	1.0	0.183	0.558	8e-42
MGI|MGI:1929095	959	Uso1 "USO1 vesicle docking fac	0.935	0.150	0.583	4.3e-41
UNIPROTKB|D4AAH7	897	Uso1 "General vesicular transp	0.935	0.160	0.576	9.5e-41
RGD|621604	959	Uso1 "USO1 vesicle transport f	0.935	0.150	0.576	1.2e-40
UNIPROTKB|P41542	959	Uso1 "General vesicular transp	0.935	0.150	0.576	1.2e-40
UNIPROTKB|F5GZ76	797	USO1 "General vesicular transp	0.935	0.180	0.569	1.7e-40
UNIPROTKB|P41541	961	USO1 "General vesicular transp	0.935	0.149	0.569	1.9e-40
UNIPROTKB|E2R8C6	963	USO1 "Uncharacterized protein"	0.935	0.149	0.569	1.9e-40
UNIPROTKB|J9P5F1	973	USO1 "Uncharacterized protein"	0.935	0.147	0.569	2e-40
UNIPROTKB|F5H4X1	947	USO1 "General vesicular transp	0.935	0.152	0.569	3e-40

FB|FBgn0040087 p115 "p115" [Drosophila melanogaster (taxid:7227)]

 Score = 451 (163.8 bits), Expect = 8.0e-42, P = 8.0e-42
 Identities = 86/154 (55%), Positives = 113/154 (73%)

Query:     1 MLHLPECESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNL 60
             M  L +   E GWS Q+ SN   LL+V+R+LVTP N  QVV++CQ V+Q S +L +LC +
Sbjct:   265 MFELSQDAEEVGWSPQKVSNFHCLLQVVRALVTPSNQQQVVAACQRVMQKSRLLHALCEI 324

Query:    61 LMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSY 120
             LM++GVPA ILTETIN VAE++R + +NQ+    V APS PPR AIVVLLMSM+N+KQ  
Sbjct:   325 LMSSGVPADILTETINAVAEVVRGDRDNQDELGRVMAPSSPPRPAIVVLLMSMINEKQLL 384

Query:   121 PLRCSVLYCFLCYLYRNENNQAKIIATLLPSATA 154
              LRC+VLYCF C+LYRN + Q  ++ TLLPS+ +
Sbjct:   385 ALRCAVLYCFECFLYRNADGQRAVVQTLLPSSAS 418

GO:0006904 "vesicle docking involved in exocytosis" evidence=ISS

GO:0005795 "Golgi stack" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0007030 "Golgi organization" evidence=IMP

GO:0008565 "protein transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

MGI|MGI:1929095 Uso1 "USO1 vesicle docking factor" [Mus musculus (taxid:10090)]

 Score = 446 (162.1 bits), Expect = 4.3e-41, P = 4.3e-41
 Identities = 84/144 (58%), Positives = 110/144 (76%)

Query:     8 ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
             E   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA G+P
Sbjct:   267 EENSGWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGIP 326

Query:    68 ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
             A ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct:   327 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386

Query:   128 YCFLCYLYRNENNQAKIIATLLPS 151
             YCF C+LY+NE  Q +I+ATLLPS
Sbjct:   387 YCFQCFLYKNEKGQGEIVATLLPS 410

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=ISO

GO:0008565 "protein transporter activity" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0045056 "transcytosis" evidence=ISO

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|D4AAH7 Uso1 "General vesicular transport factor p115" [Rattus norvegicus (taxid:10116)]

 Score = 442 (160.7 bits), Expect = 9.5e-41, P = 9.5e-41
 Identities = 83/144 (57%), Positives = 110/144 (76%)

Query:     8 ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
             +   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA G+P
Sbjct:   267 DENPGWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGIP 326

Query:    68 ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
             A ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct:   327 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386

Query:   128 YCFLCYLYRNENNQAKIIATLLPS 151
             YCF C+LY+NE  Q +I+ATLLPS
Sbjct:   387 YCFQCFLYKNEKGQGEIVATLLPS 410

GO:0000139 "Golgi membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

RGD|621604 Uso1 "USO1 vesicle transport factor" [Rattus norvegicus (taxid:10116)]

 Score = 442 (160.7 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 83/144 (57%), Positives = 110/144 (76%)

Query:     8 ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
             +   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA G+P
Sbjct:   267 DENPGWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGIP 326

Query:    68 ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
             A ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct:   327 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386

Query:   128 YCFLCYLYRNENNQAKIIATLLPS 151
             YCF C+LY+NE  Q +I+ATLLPS
Sbjct:   387 YCFQCFLYKNEKGQGEIVATLLPS 410

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006886 "intracellular protein transport" evidence=IEA;ISO

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=IDA

GO:0008565 "protein transporter activity" evidence=IEA;ISO

GO:0045056 "transcytosis" evidence=IDA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

UNIPROTKB|P41542 Uso1 "General vesicular transport factor p115" [Rattus norvegicus (taxid:10116)]

 Score = 442 (160.7 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 83/144 (57%), Positives = 110/144 (76%)

Query:     8 ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
             +   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA G+P
Sbjct:   267 DENPGWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGIP 326

Query:    68 ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
             A ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct:   327 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386

Query:   128 YCFLCYLYRNENNQAKIIATLLPS 151
             YCF C+LY+NE  Q +I+ATLLPS
Sbjct:   387 YCFQCFLYKNEKGQGEIVATLLPS 410

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

UNIPROTKB|F5GZ76 USO1 "General vesicular transport factor p115" [Homo sapiens (taxid:9606)]

 Score = 438 (159.2 bits), Expect = 1.7e-40, P = 1.7e-40
 Identities = 82/144 (56%), Positives = 110/144 (76%)

Query:     8 ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
             +   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA GVP
Sbjct:   102 DENSGWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGVP 161

Query:    68 ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
             A ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct:   162 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 221

Query:   128 YCFLCYLYRNENNQAKIIATLLPS 151
             YCF C+LY+N+  Q +I++TLLPS
Sbjct:   222 YCFQCFLYKNQKGQGEIVSTLLPS 245

GO:0000139 "Golgi membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

UNIPROTKB|P41541 USO1 "General vesicular transport factor p115" [Bos taurus (taxid:9913)]

 Score = 440 (159.9 bits), Expect = 1.9e-40, P = 1.9e-40
 Identities = 82/144 (56%), Positives = 110/144 (76%)

Query:     8 ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
             +   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA GVP
Sbjct:   267 DENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVP 326

Query:    68 ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
             A ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct:   327 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386

Query:   128 YCFLCYLYRNENNQAKIIATLLPS 151
             YCF C+LY+N+  Q +I++TLLPS
Sbjct:   387 YCFQCFLYKNQKGQGEIVSTLLPS 410

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0000139 "Golgi membrane" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

UNIPROTKB|E2R8C6 USO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 440 (159.9 bits), Expect = 1.9e-40, P = 1.9e-40
 Identities = 82/144 (56%), Positives = 110/144 (76%)

Query:     8 ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
             +   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA GVP
Sbjct:   267 DENSGWSAQKVTNLHVMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGVP 326

Query:    68 ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
             A ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct:   327 ADILTETINTVSEVIRGYQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386

Query:   128 YCFLCYLYRNENNQAKIIATLLPS 151
             YCF C+LY+N+  Q +I++TLLPS
Sbjct:   387 YCFQCFLYKNQKGQGEIVSTLLPS 410

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|J9P5F1 USO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 440 (159.9 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 82/144 (56%), Positives = 110/144 (76%)

Query:     8 ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
             +   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA GVP
Sbjct:   270 DENSGWSAQKVTNLHVMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGVP 329

Query:    68 ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
             A ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct:   330 ADILTETINTVSEVIRGYQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 389

Query:   128 YCFLCYLYRNENNQAKIIATLLPS 151
             YCF C+LY+N+  Q +I++TLLPS
Sbjct:   390 YCFQCFLYKNQKGQGEIVSTLLPS 413

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|F5H4X1 USO1 "General vesicular transport factor p115" [Homo sapiens (taxid:9606)]

 Score = 438 (159.2 bits), Expect = 3.0e-40, P = 3.0e-40
 Identities = 82/144 (56%), Positives = 110/144 (76%)

Query:     8 ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
             +   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA GVP
Sbjct:   252 DENSGWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGVP 311

Query:    68 ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
             A ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct:   312 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 371

Query:   128 YCFLCYLYRNENNQAKIIATLLPS 151
             YCF C+LY+N+  Q +I++TLLPS
Sbjct:   372 YCFQCFLYKNQKGQGEIVSTLLPS 395

GO:0000139 "Golgi membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z1Z0	USO1_MOUSE	No assigned EC number	0.5793	0.9415	0.1511	yes	N/A
P41542	USO1_RAT	No assigned EC number	0.5886	0.9155	0.1470	yes	N/A
O60763	USO1_HUMAN	No assigned EC number	0.5815	0.9155	0.1465	yes	N/A
P41541	USO1_BOVIN	No assigned EC number	0.5815	0.9155	0.1467	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	154
pfam04869	308	pfam04869, Uso1_p115_head, Uso1 / p115 like vesicl	4e-17

>gnl|CDD|218299 pfam04869, Uso1_p115_head, Uso1 / p115 like vesicle tethering protein, head region

 Score = 75.8 bits (187), Expect = 4e-17
 Identities = 33/83 (39%), Positives = 39/83 (46%), Gaps = 15/83 (18%)

Query: 84  SNHENQEHFANVYAP-------------SDPPRQAIVVLLMSMVNQK--QSYPLRCSVLY 128
            N  NQE FA V  P              DPP   IV LL  M+N+   Q + LRC+ LY
Sbjct: 1   GNARNQEEFAQVDVPYFDPSLPGQSQSNGDPPVPVIVALLNWMLNENSVQPFDLRCAALY 60

Query: 129 CFLCYLYRNENNQAKIIATLLPS 151
           C   YLY NE  Q   + T +PS
Sbjct: 61  CLKAYLYNNEEGQLHFLKTQIPS 83

Also known as General vesicular transport factor, Transcytosis associated protein (TAP) and Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the golgi stack. This family consists of part of the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering. The N-terminal part of the head region, not within this family, contains context-detected Armadillo/beta-catenin-like repeats (pfam00514). Length = 308

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
KOG0946|consensus	970		100.0
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	99.82
KOG2160|consensus	342		96.4
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	95.33
KOG2160|consensus	342		95.21
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	93.28
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	92.23
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	91.77
PF01365	207	RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi	91.11
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	90.34
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	90.2
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	87.36
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	87.03
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	85.87
PF08045	257	CDC14: Cell division control protein 14, SIN compo	83.1
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	81.01

>KOG0946|consensus

Probab=100.00  E-value=1.1e-45  Score=342.46  Aligned_cols=147  Identities=54%  Similarity=0.870  Sum_probs=143.7

Q ss_pred             CCccccchHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCH
Q psy13327          7 CESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNH   86 (154)
Q Consensus         7 ~~e~~~W~~Qk~~Ni~~~L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~   86 (154)
                      |+|+++|++||+.|++.+|+|||.||+|||++..|++||++|.+++++..||.++|++++|++|++++++|+|++||||.
T Consensus       270 d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~  349 (970)
T KOG0946|consen  270 DGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNA  349 (970)
T ss_pred             CcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhch
Confidence            55999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHhhcccCCCCC-ChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHHHhcCCCC
Q psy13327         87 ENQEHFANVYAPSDP-PRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATLLPSAT  153 (154)
Q Consensus        87 ~nQe~fa~~~vps~p-~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tllp~~~  153 (154)
                      .||++|+++++|+.| |+|+++|+||+|.||+|+|++|||+.|||+||+|+|.+||.+|++|++|+++
T Consensus       350 ~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~~  417 (970)
T KOG0946|consen  350 RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSST  417 (970)
T ss_pred             HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhhc
Confidence            999999999999876 8999999999999999999999999999999999999999999999999984

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=99.82  E-value=1.2e-20  Score=162.01  Aligned_cols=70  Identities=47%  Similarity=0.851  Sum_probs=57.9

Q ss_pred             cCHHhHHHhhcccCC-------------CCCChHHHHHHHHHHhhcC--CcchhHHHHHHHHHHHhccChhhHHHHHHHh
Q psy13327         84 SNHENQEHFANVYAP-------------SDPPRQAIVVLLMSMVNQK--QSYPLRCSVLYCFLCYLYRNENNQAKIIATL  148 (154)
Q Consensus        84 gn~~nQe~fa~~~vp-------------s~p~~p~i~vLLl~~~~s~--~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tl  148 (154)
                      ||+.|||+||+++||             +++++|++.+||..|++++  |+|++|+||+|||||||++|+++|++|++|+
T Consensus         1 gN~~~Q~~Fa~~~vp~~dp~~~~~~~~~~~~~~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~   80 (312)
T PF04869_consen    1 GNATNQEEFAQIDVPYFDPSLPGQVQAPSDPPVPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTL   80 (312)
T ss_dssp             --HHHHHHHHC-EE-------------SSSS-EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTT
T ss_pred             CCHHHHHHHhcceeecccccccccccCCCCCCccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            899999999999994             3567899999999998877  9999999999999999999999999999999


Q ss_pred             cCCCC
Q psy13327        149 LPSAT  153 (154)
Q Consensus       149 lp~~~  153 (154)
                      +|+++
T Consensus        81 i~~~~   85 (312)
T PF04869_consen   81 IPSYA   85 (312)
T ss_dssp             SSTT-
T ss_pred             hccCC
Confidence            99873

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>KOG2160|consensus

Probab=96.40  E-value=0.044  Score=48.37  Aligned_cols=90  Identities=16%  Similarity=0.196  Sum_probs=73.2

Q ss_pred             HHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHH
Q psy13327         46 FVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCS  125 (154)
Q Consensus        46 ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~A  125 (154)
                      .-|.+.|.+..++.  .-...+..||..|..++|-+.+.||..|+.+=....     .++    |+.++.+.++...|..
T Consensus       118 ndl~~~ggl~~ll~--~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~-----L~~----Ll~~ls~~~~~~~r~k  186 (342)
T KOG2160|consen  118 NDLISLGGLVPLLG--YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGA-----LSK----LLKILSSDDPNTVRTK  186 (342)
T ss_pred             HhHhhccCHHHHHH--HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHccc-----HHH----HHHHHccCCCchHHHH
Confidence            34678888888887  446889999999999999999999999998755442     122    3444446778999999


Q ss_pred             HHHHHHHHhccChhhHHHHHH
Q psy13327        126 VLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       126 a~~c~kay~~~N~~~q~~~i~  146 (154)
                      |+|-+-|-+-+|+.||..|..
T Consensus       187 aL~AissLIRn~~~g~~~fl~  207 (342)
T KOG2160|consen  187 ALFAISSLIRNNKPGQDEFLK  207 (342)
T ss_pred             HHHHHHHHHhcCcHHHHHHHh
Confidence            999999999999999999865

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=95.33  E-value=0.28  Score=33.79  Aligned_cols=87  Identities=15%  Similarity=0.211  Sum_probs=65.6

Q ss_pred             HHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHH
Q psy13327         48 LQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL  127 (154)
Q Consensus        48 l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~  127 (154)
                      +.+.|++..++++.....  .++|..|+.+++.+..+++...+.|-+..+     -|.    |+.++++. ..++|..|+
T Consensus         3 ~~~~~~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~-----i~~----l~~~l~~~-~~~v~~~a~   70 (120)
T cd00020           3 VIQAGGLPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVVEAGG-----LPA----LVQLLKSE-DEEVVKAAL   70 (120)
T ss_pred             HHHcCChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHCCC-----hHH----HHHHHhCC-CHHHHHHHH
Confidence            568899999999887665  789999999999999998888888865332     122    33333333 468889999


Q ss_pred             HHHHHHhccChhhHHHHHH
Q psy13327        128 YCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       128 ~c~kay~~~N~~~q~~~i~  146 (154)
                      .|+.....+.+..+..++.
T Consensus        71 ~~L~~l~~~~~~~~~~~~~   89 (120)
T cd00020          71 WALRNLAAGPEDNKLIVLE   89 (120)
T ss_pred             HHHHHHccCcHHHHHHHHH
Confidence            9999998888766555543

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2160|consensus

Probab=95.21  E-value=0.23  Score=43.94  Aligned_cols=56  Identities=21%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             cchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhccc
Q psy13327         40 VVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVY   96 (154)
Q Consensus        40 ~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~   96 (154)
                      |-|..|..+...|-+..|+.+.= +..|..+|++||.++.-+||.|+.-|+.|-.+.
T Consensus       154 NNP~~Qe~v~E~~~L~~Ll~~ls-~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~  209 (342)
T KOG2160|consen  154 NNPKSQEQVIELGALSKLLKILS-SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLN  209 (342)
T ss_pred             cCHHHHHHHHHcccHHHHHHHHc-cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence            66899999999999999988765 999999999999999999999999999997764

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=93.28  E-value=0.88  Score=38.30  Aligned_cols=133  Identities=22%  Similarity=0.300  Sum_probs=85.4

Q ss_pred             cccchHHHHHHHHHHHHHHH-------HHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHH
Q psy13327         10 EEGWSAQRESNILALLKVIR-------SLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEII   82 (154)
Q Consensus        10 ~~~W~~Qk~~Ni~~~L~ivr-------llV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlI   82 (154)
                      ...|+.|...++.++|+.-+       .+..=+| ...-+.||..+.+.|.+..+..+.=.+  ...+|..|+.+++++ 
T Consensus         6 ~~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n-~aaf~~nq~~Ir~~Ggi~lI~~lL~~p--~~~vr~~AL~aL~Nl-   81 (254)
T PF04826_consen    6 KNILEAQELQKLLCLLESTEDPFIQEKALIALGN-SAAFPFNQDIIRDLGGISLIGSLLNDP--NPSVREKALNALNNL-   81 (254)
T ss_pred             cCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh-hccChhHHHHHHHcCCHHHHHHHcCCC--ChHHHHHHHHHHHhc-
Confidence            34599999999999998432       2333333 336789999999999999999887665  458999999999987 


Q ss_pred             hcCHHhHHHhhcccCC-------CCC----ChHHHHHHHHHH--hhcCCcchhHHHHHHHHHHHhccChhhHHHHHHHh
Q psy13327         83 RSNHENQEHFANVYAP-------SDP----PRQAIVVLLMSM--VNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATL  148 (154)
Q Consensus        83 rgn~~nQe~fa~~~vp-------s~p----~~p~i~vLLl~~--~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tl  148 (154)
                      .++..||+.-. .-++       +.+    .+-+-.-+|.+|  .++.|.. ++-..-+++.-...+|...|...+..|
T Consensus        82 s~~~en~~~Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~-l~~~i~~ll~LL~~G~~~~k~~vLk~L  158 (254)
T PF04826_consen   82 SVNDENQEQIK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHM-LANYIPDLLSLLSSGSEKTKVQVLKVL  158 (254)
T ss_pred             CCChhhHHHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhh-HHhhHHHHHHHHHcCChHHHHHHHHHH
Confidence            77888887653 2333       222    122233335555  2233333 233344455555566666666555544

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=92.23  E-value=0.51  Score=29.59  Aligned_cols=52  Identities=6%  Similarity=0.171  Sum_probs=40.1

Q ss_pred             hhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHH
Q psy13327         69 CILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL  131 (154)
Q Consensus        69 ~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~k  131 (154)
                      +||..|+.++|.+..+.+...+.+          .|.++-.|+.++++.++ ++|.+|++++.
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~----------~~~~~~~L~~~L~d~~~-~VR~~A~~aLg   53 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPY----------LPELLPALIPLLQDDDD-SVRAAAAWALG   53 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHH----------HHHHHHHHHHHTTSSSH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHH----------HHHHHHHHHHHHcCCCH-HHHHHHHHHHh
Confidence            689999999999776666655443          35677778888877767 99999999985

...

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=91.77  E-value=1.5  Score=32.39  Aligned_cols=73  Identities=18%  Similarity=0.275  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHH-hhcCCcchhHHHHHHHHHHHhccChhhHHHHHHHh
Q psy13327         70 ILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSM-VNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATL  148 (154)
Q Consensus        70 Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~-~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tl  148 (154)
                      .|..-+..+|-+-..|+.+|+.+....-        +-.||-.. ..+..|| +|=-|..|++--+++|++.|.-+. .|
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~G--------i~liL~~c~iD~~nP~-irEwai~aiRnL~e~n~eNQ~~I~-~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGG--------IPLILSCCNIDDHNPF-IREWAIFAIRNLCEGNPENQEFIA-QL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCC--------hHHHHHhcCCCcccHH-HHHHHHHHHHHHHhCCHHHHHHHH-hc
Confidence            4778899999999999999999987654        22233222 2244555 899999999999999999997554 44


Q ss_pred             cCCC
Q psy13327        149 LPSA  152 (154)
Q Consensus       149 lp~~  152 (154)
                      -|+.
T Consensus        72 ~~~~   75 (102)
T PF09759_consen   72 EPQG   75 (102)
T ss_pred             cccC
Confidence            4443

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels

Probab=91.11  E-value=0.54  Score=37.49  Aligned_cols=55  Identities=20%  Similarity=0.129  Sum_probs=44.2

Q ss_pred             cchHHHHHHHHhcHHHHHHHHhcCcCCC----------------hhhHHHHHHHHHHHHhcCHHhHHHhhc
Q psy13327         40 VVSSCQFVLQVSGILGSLCNLLMAAGVP----------------ACILTETINTVAEIIRSNHENQEHFAN   94 (154)
Q Consensus        40 ~t~~nQ~~l~q~gll~~ll~Laf~~~~p----------------~~Ir~eAL~t~adlIrgn~~nQe~fa~   94 (154)
                      ..+.+|+.|..-|+++.++++.-.+...                ..|-..+..-+.-..|||+.||.+|++
T Consensus        31 ~~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~  101 (207)
T PF01365_consen   31 PNRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK  101 (207)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            3469999999999999988887664333                356778888899999999999999886

They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=90.34  E-value=1.4  Score=31.70  Aligned_cols=63  Identities=13%  Similarity=0.165  Sum_probs=50.0

Q ss_pred             CCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChh
Q psy13327         65 GVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNEN  139 (154)
Q Consensus        65 ~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~  139 (154)
                      .-..|||+.+|..+..+|+.+.     +...      ..|.+..+++..+.+..+| +=.+|..|+-+-...+|+
T Consensus        14 dp~~PvRa~gL~~L~~Li~~~~-----~~~~------~~~~il~l~l~~L~d~Dsy-VYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen   14 DPLPPVRAHGLVLLRKLIESKS-----EPVI------DIPKILDLFLSQLKDEDSY-VYLNAIKGLAALADRHPD   76 (92)
T ss_pred             CCCcchHHHHHHHHHHHHHcCC-----cchh------hHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHHHHChH
Confidence            4557799999999999999987     1111      3478888888888877776 468899999988888887

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=90.20  E-value=1.2  Score=38.80  Aligned_cols=95  Identities=15%  Similarity=0.226  Sum_probs=63.0

Q ss_pred             hcHHHHHHHHhcCcC--CChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCC------hHHHHHHHHHHhh--cCCcc
Q psy13327         51 SGILGSLCNLLMAAG--VPACILTETINTVAEIIRSNHENQEHFANVYAPSDPP------RQAIVVLLMSMVN--QKQSY  120 (154)
Q Consensus        51 ~gll~~ll~Laf~~~--~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~------~p~i~vLLl~~~~--s~~~f  120 (154)
                      ..++..|+++++...  -+.++|+.|+.+.--...+|+..|..|.+-.+|....      ..-+.--|++.-.  +..++
T Consensus        33 ~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy  112 (312)
T PF04869_consen   33 VPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPY  112 (312)
T ss_dssp             EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HH
T ss_pred             ccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHH
Confidence            347889999999976  7999999999999999999999999999999984321      1122222444211  33555


Q ss_pred             hhHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        121 PLRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       121 ~lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                      ..=+ |+..|--.+.+|++.|....+
T Consensus       113 ~~wf-Aa~il~hll~dn~~~Ke~al~  137 (312)
T PF04869_consen  113 RCWF-AAVILMHLLRDNPEAKEQALR  137 (312)
T ss_dssp             HHHH-HHHHHHHHHTT-HHHHHHHTT
T ss_pred             HHHH-HHHHHHHHHhcCHHHHHHHHc
Confidence            5434 556677778888888876643

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=87.36  E-value=2.9  Score=24.80  Aligned_cols=39  Identities=13%  Similarity=0.135  Sum_probs=34.4

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHH
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEII   82 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlI   82 (154)
                      +.|.+.+.++|.+..|+++.-  .-+..|+.+|.-+++.+-
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence            568899999999999999987  778899999999988763

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=87.03  E-value=2.5  Score=31.23  Aligned_cols=59  Identities=17%  Similarity=0.096  Sum_probs=51.0

Q ss_pred             chHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCC
Q psy13327         41 VSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPS   99 (154)
Q Consensus        41 t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps   99 (154)
                      -+.+|..+.+.|-+..+|+-----.-.+-+|=-|+.++=-+..||+.||+..+++....
T Consensus        17 ~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~~   75 (102)
T PF09759_consen   17 NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQG   75 (102)
T ss_pred             CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhccccC
Confidence            57899999999988888887655555566999999999999999999999999998753

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=85.87  E-value=5.5  Score=36.34  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=59.2

Q ss_pred             HhcHHHHHHHHhcCc--CCChhhHHHHHHHHHHHHhcCHH--hHHHhhcccC--CCCCChHHHHHHHHHHhhcCCc-chh
Q psy13327         50 VSGILGSLCNLLMAA--GVPACILTETINTVAEIIRSNHE--NQEHFANVYA--PSDPPRQAIVVLLMSMVNQKQS-YPL  122 (154)
Q Consensus        50 q~gll~~ll~Laf~~--~~p~~Ir~eAL~t~adlIrgn~~--nQe~fa~~~v--ps~p~~p~i~vLLl~~~~s~~~-f~l  122 (154)
                      +.+-+..+++-++..  ..+.++|..+|.+.+.++.....  ..+.++-..-  -.-...|... +++++.  +|| -|+
T Consensus       331 ~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~-~l~~~~--~qPF~el  407 (503)
T PF10508_consen  331 QGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSN-LLMSLL--KQPFPEL  407 (503)
T ss_pred             cchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHH-HHHHHh--cCCchHH
Confidence            345888899988884  77889999999999999754443  1111100000  0001112222 444444  788 689


Q ss_pred             HHHHHHHHHHHhccChhhHHHHHHH
Q psy13327        123 RCSVLYCFLCYLYRNENNQAKIIAT  147 (154)
Q Consensus       123 R~Aa~~c~kay~~~N~~~q~~~i~T  147 (154)
                      |+||...+++-+. ++-|+..+.++
T Consensus       408 r~a~~~~l~~l~~-~~Wg~~~i~~~  431 (503)
T PF10508_consen  408 RCAAYRLLQALAA-QPWGQREICSS  431 (503)
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHhC
Confidence            9999999998654 56777776653

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=83.10  E-value=7.8  Score=33.04  Aligned_cols=55  Identities=20%  Similarity=0.326  Sum_probs=49.4

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccC
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYA   97 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~v   97 (154)
                      +..|+.|.+.+-++.++++. ++.-+..|...+|.|+--+...++.|+..|-...=
T Consensus       123 p~Sr~lF~r~~~m~lll~LL-~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~G  177 (257)
T PF08045_consen  123 PPSRKLFHREQNMELLLDLL-SPSNPPAIQSACLDTLVCILLDSPENQRDFEELNG  177 (257)
T ss_pred             chHHHHHhhhhhHHHHHHHh-ccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCC
Confidence            56788999999999999998 66778999999999999999999999999988764

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=81.01  E-value=6.7  Score=34.61  Aligned_cols=101  Identities=12%  Similarity=0.152  Sum_probs=74.9

Q ss_pred             chHHHHHHHHhcHHHHHHHHhcCc--CCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCC
Q psy13327         41 VSSCQFVLQVSGILGSLCNLLMAA--GVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQ  118 (154)
Q Consensus        41 t~~nQ~~l~q~gll~~ll~Laf~~--~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~  118 (154)
                      .++|-+-||+-.+...++...+..  .....+|+.-|.+++-++++=|..      +..   +..|.+..||+.-+ +-.
T Consensus       308 ~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~------vl~---~~l~~LlPLLlqsL-~~~  377 (415)
T PF12460_consen  308 NHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKS------VLL---PELPTLLPLLLQSL-SLP  377 (415)
T ss_pred             ccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHH------HHH---HHHHHHHHHHHHHh-CCC
Confidence            468888899999888888777773  556668999999999998864421      111   12366777755433 222


Q ss_pred             cchhHHHHHHHHHHHhccChhhHHHHHHHhcCC
Q psy13327        119 SYPLRCSVLYCFLCYLYRNENNQAKIIATLLPS  151 (154)
Q Consensus       119 ~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tllp~  151 (154)
                      .=++|.+++.+++.++.++++.-..=++||+|.
T Consensus       378 ~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~  410 (415)
T PF12460_consen  378 DADVLLSSLETLKMILEEAPELISEHLSSLIPR  410 (415)
T ss_pred             CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            336999999999999999999999999999873

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	154
3gq2_A	651	Crystal Structure Of The Dimer Of The P115 Tether G		5e-45
2w3c_A	577	Globular Head Region Of The Human General Vesicular		9e-45

>pdb|3GQ2|A Chain A, Crystal Structure Of The Dimer Of The P115 Tether Globular Head Domain Length = 651

Iteration: 1
 Score =  176 bits (445), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 110/145 (75%)
Query: 8   ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
           +   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA GVP
Sbjct: 267 DENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVP 326
Query: 68  ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
           A ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct: 327 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386
Query: 128 YCFLCYLYRNENNQAKIIATLLPSA 152
           YCF C+LY+N+  Q +I++TLLPS 
Sbjct: 387 YCFQCFLYKNQKGQGEIVSTLLPST 411

>pdb|2W3C|A Chain A, Globular Head Region Of The Human General Vesicular Transport Factor P115 Length = 577

Iteration: 1
 Score =  175 bits (443), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 110/145 (75%)
Query: 8   ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
           +   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA GVP
Sbjct: 215 DENSGWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGVP 274
Query: 68  ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
           A ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct: 275 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 334
Query: 128 YCFLCYLYRNENNQAKIIATLLPSA 152
           YCF C+LY+N+  Q +I++TLLPS 
Sbjct: 335 YCFQCFLYKNQKGQGEIVSTLLPST 359

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-40

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score =  142 bits (358), Expect = 2e-40
 Identities = 82/148 (55%), Positives = 110/148 (74%)

Query: 4   LPECESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMA 63
               +   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA
Sbjct: 263 FEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA 322

Query: 64  AGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLR 123
            GVPA ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LR
Sbjct: 323 TGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLR 382

Query: 124 CSVLYCFLCYLYRNENNQAKIIATLLPS 151
           C+VLYCF C+LY+N+  Q +I++TLLPS
Sbjct: 383 CAVLYCFQCFLYKNQKGQGEIVSTLLPS 410

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
3grl_A	651	General vesicular transport factor P115; vesicle t	100.0
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.34
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	96.46
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	96.44
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	96.35
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	96.17
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	95.83
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.58
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	94.84
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	93.37
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	92.49
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	92.31
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	92.17
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	91.85
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	91.59
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	90.91
3grl_A	651	General vesicular transport factor P115; vesicle t	90.77
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	90.56
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	90.44
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	90.02
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	87.85
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	87.31
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	86.67
3nmz_A	458	APC variant protein; protein-protein complex, arma	85.47
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	84.98
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	84.74
3nmz_A	458	APC variant protein; protein-protein complex, arma	84.22
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	84.19
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	83.23
2xoa_A	559	Ryanodine receptor 1; metal transport, calcium cha	83.22
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	82.73
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	81.55

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=100.00  E-value=1.6e-42  Score=318.18  Aligned_cols=146  Identities=56%  Similarity=0.974  Sum_probs=141.7

Q ss_pred             CCccccchHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCH
Q psy13327          7 CESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNH   86 (154)
Q Consensus         7 ~~e~~~W~~Qk~~Ni~~~L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~   86 (154)
                      +++++.|++||++|++++|+|||+||+|+++.++++.||++|+++|+++.||+++|++++|.+||++||+|+||+||||+
T Consensus       266 ~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~  345 (651)
T 3grl_A          266 GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ  345 (651)
T ss_dssp             CSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             CccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH
Confidence            55678999999999999999999999999876679999999999999999999999999999999999999999999999


Q ss_pred             HhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHHHhcCCC
Q psy13327         87 ENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATLLPSA  152 (154)
Q Consensus        87 ~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tllp~~  152 (154)
                      .+|++|++++||++|++|+++++|++|++++|+|++|+||+|||||||++|+++|.++++|++|++
T Consensus       346 ~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~  411 (651)
T 3grl_A          346 VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPST  411 (651)
T ss_dssp             HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCC
T ss_pred             HHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999987

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.34  E-value=0.0019  Score=53.38  Aligned_cols=96  Identities=15%  Similarity=0.173  Sum_probs=76.1

Q ss_pred             cchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCc
Q psy13327         40 VVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQS  119 (154)
Q Consensus        40 ~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~  119 (154)
                      +.+.+|..+.++|.+..|+++.-+ ..+..+|.+|+.+++.++||++..++.|.+..     .-|    .|..++.+. .
T Consensus       112 ~n~~~~~~vv~~g~l~~Ll~LL~~-~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g-----gi~----~L~~lL~~~-d  180 (296)
T 1xqr_A          112 NVAAIQEQVLGLGALRKLLRLLDR-DACDTVRVKALFAISCLVREQEAGLLQFLRLD-----GFS----VLMRAMQQQ-V  180 (296)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-----HHH----HHHHHHHSS-C
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC-----CHH----HHHHHHcCC-C
Confidence            457899999999999999999864 34578999999999999999999999887631     122    333344443 7


Q ss_pred             chhHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        120 YPLRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       120 f~lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                      +++|..|+.++.....++++.+..+++
T Consensus       181 ~~v~~~A~~aLs~L~~~~~~~~~~vv~  207 (296)
T 1xqr_A          181 QKLKVKSAFLLQNLLVGHPEHKGTLCS  207 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            899999999999888888888777765

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=96.46  E-value=0.057  Score=39.81  Aligned_cols=93  Identities=15%  Similarity=0.164  Sum_probs=72.4

Q ss_pred             chHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcc
Q psy13327         41 VSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSY  120 (154)
Q Consensus        41 t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f  120 (154)
                      ...++..+.+.|.+..++++.-++  ...+|..|+.+++.+..+++.+++.+.+-.+     -|    .|+.++.+. ..
T Consensus        43 ~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~-----i~----~L~~lL~~~-~~  110 (210)
T 4db6_A           43 GNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGA-----LP----ALVQLLSSP-NE  110 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC-----HH----HHHHHTTCS-CH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCC-----HH----HHHHHHcCC-cH
Confidence            456788999999999999998765  6789999999999999999999888765433     22    234444443 46


Q ss_pred             hhHHHHHHHHHHHhccChhhHHHHH
Q psy13327        121 PLRCSVLYCFLCYLYRNENNQAKII  145 (154)
Q Consensus       121 ~lR~Aa~~c~kay~~~N~~~q~~~i  145 (154)
                      ++|..|+.++.....++++.+..++
T Consensus       111 ~v~~~a~~~L~~l~~~~~~~~~~~~  135 (210)
T 4db6_A          111 QILQEALWALSNIASGGNEQIQAVI  135 (210)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8899999999998888887765554

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=96.44  E-value=0.026  Score=46.51  Aligned_cols=107  Identities=13%  Similarity=0.125  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHH-HhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCC
Q psy13327         22 LALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCN-LLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSD  100 (154)
Q Consensus        22 ~~~L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~-Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~  100 (154)
                      ..+|+.+.-|+...       .|...|.+.|.+..++. +.-+  -...||..|..++|.+..+|+.+|+.+-+-.+   
T Consensus        58 ~~Al~~L~~lv~~~-------dna~~~~~~G~l~~Lv~~lL~s--~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~---  125 (296)
T 1xqr_A           58 EGALELLADLCENM-------DNAADFCQLSGMHLLVGRYLEA--GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGA---  125 (296)
T ss_dssp             HHHHHHHHHHHTSH-------HHHHHHHHTTHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH---
T ss_pred             HHHHHHHHHHHhCh-------hhHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC---
Confidence            44556665555522       37778899999999988 7543  35689999999999999999999998875432   


Q ss_pred             CChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        101 PPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       101 p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                        -|.++-+    +.+...-.+|..|++++-+...+|+..+..|++
T Consensus       126 --l~~Ll~L----L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~  165 (296)
T 1xqr_A          126 --LRKLLRL----LDRDACDTVRVKALFAISCLVREQEAGLLQFLR  165 (296)
T ss_dssp             --HHHHHHH----HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --HHHHHHH----HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence              3334333    332224578999999999999999998887765

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=96.35  E-value=0.11  Score=38.65  Aligned_cols=105  Identities=11%  Similarity=0.130  Sum_probs=80.4

Q ss_pred             HHHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCCh
Q psy13327         24 LLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPR  103 (154)
Q Consensus        24 ~L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~  103 (154)
                      ++..++-+....      +.+...+.+.|.+..++++.-++.  ..+|..|+.+++.+..+++.+++.+.+..+      
T Consensus        22 a~~~L~~l~~~~------~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~------   87 (252)
T 4hxt_A           22 AARDLAEIASGP------ASAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPDEAIKAIVDAGG------   87 (252)
T ss_dssp             HHHHHHHHHTSC------HHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH------
T ss_pred             HHHHHHHHhcCC------cHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCChHHHHHHHHCCC------
Confidence            444555554443      368889999999999999987654  899999999999999999999998875432      


Q ss_pred             HHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        104 QAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       104 p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                         +-.|+.++.+ ..-++|..|+.++.....++++.+..+++
T Consensus        88 ---i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  126 (252)
T 4hxt_A           88 ---VEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVD  126 (252)
T ss_dssp             ---HHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             ---HHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence               2334455544 35688999999999999888888876654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=96.17  E-value=0.067  Score=39.88  Aligned_cols=94  Identities=12%  Similarity=0.088  Sum_probs=72.6

Q ss_pred             cchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCc
Q psy13327         40 VVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQS  119 (154)
Q Consensus        40 ~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~  119 (154)
                      ..+.++..+.+.|.+..++++.-+..  ..++..|+.+++.+.++++.+.+.+.+-.         .+-.|+.++.+. .
T Consensus       116 ~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---------~i~~L~~ll~~~-~  183 (252)
T 4hxt_A          116 GPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPDEAIKAIVDAG---------GVEVLVKLLTST-D  183 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTT---------HHHHHHHHTTCS-C
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCHHHHHHHHHCc---------CHHHHHHHHCCC-C
Confidence            34678888999999999999887544  78999999999999999998877665422         233345555443 4


Q ss_pred             chhHHHHHHHHHHHhccChhhHHHHH
Q psy13327        120 YPLRCSVLYCFLCYLYRNENNQAKII  145 (154)
Q Consensus       120 f~lR~Aa~~c~kay~~~N~~~q~~~i  145 (154)
                      -++|..|+.++.....++++.+..++
T Consensus       184 ~~v~~~a~~~L~~l~~~~~~~~~~l~  209 (252)
T 4hxt_A          184 SEVQKEAARALANIASGPTSAIKAIV  209 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            58899999999999988888776654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=95.83  E-value=0.18  Score=37.97  Aligned_cols=91  Identities=14%  Similarity=0.174  Sum_probs=71.0

Q ss_pred             HHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhH
Q psy13327         44 CQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLR  123 (154)
Q Consensus        44 nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR  123 (154)
                      .+..+.+.|.+..|+++.-++  ...+|..|+.+++.+.++++.+.+.+.+-.+         +..|+.++.+. .-++|
T Consensus       130 ~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~---------i~~L~~ll~~~-~~~v~  197 (252)
T 4db8_A          130 QIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGA---------LPALVQLLSSP-NEQIL  197 (252)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC---------HHHHHHGGGCS-SHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCC---------HHHHHHHHCCC-CHHHH
Confidence            337889999999999988543  6789999999999999999988877665322         22344555444 56789


Q ss_pred             HHHHHHHHHHhccChhhHHHHHH
Q psy13327        124 CSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       124 ~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                      ..|+.++.....++++.+..+++
T Consensus       198 ~~a~~~L~~l~~~~~~~~~~~~~  220 (252)
T 4db8_A          198 QEALWALSNIASGGNEQKQAVKE  220 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHH
Confidence            99999999999999888777654

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.58  E-value=0.17  Score=37.15  Aligned_cols=94  Identities=13%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             chHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcc
Q psy13327         41 VSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSY  120 (154)
Q Consensus        41 t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f  120 (154)
                      ...++..+.+.|.+..++++.-++  ...+|..|..+++.+.++++...+.+.+-.         .+-.|+.++.+. ..
T Consensus        85 ~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---------~i~~L~~ll~~~-~~  152 (210)
T 4db6_A           85 GNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAG---------ALPALVQLLSSP-NE  152 (210)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---------HHHHHHHHTTCS-CH
T ss_pred             CcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHHcC---------cHHHHHHHHcCC-CH
Confidence            456778889999999999987655  589999999999999999998877664321         233345555443 56


Q ss_pred             hhHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        121 PLRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       121 ~lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                      ++|..|+.++.....++++.+..+++
T Consensus       153 ~v~~~a~~aL~~l~~~~~~~~~~~~~  178 (210)
T 4db6_A          153 QILQEALWALSNIASGGNEQKQAVKE  178 (210)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            88999999999999988888766543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=94.84  E-value=0.4  Score=36.04  Aligned_cols=91  Identities=13%  Similarity=0.166  Sum_probs=68.8

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcch
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYP  121 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~  121 (154)
                      ..+...+.+.|.+..++++.-++.  ..++..|+.+++.+..+++.+++.+.+..         .+-.|+.++.+. .-+
T Consensus        44 ~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g---------~i~~L~~lL~~~-~~~  111 (252)
T 4db8_A           44 NEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAG---------ALPALVQLLSSP-NEQ  111 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTT---------HHHHHHHGGGCS-CHH
T ss_pred             CchHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcC---------CHHHHHHHHcCC-CHH
Confidence            345677899999999999987665  88999999999999999999998876542         233345555543 457


Q ss_pred             hHHHHHHHHHHHhccChhhHHHH
Q psy13327        122 LRCSVLYCFLCYLYRNENNQAKI  144 (154)
Q Consensus       122 lR~Aa~~c~kay~~~N~~~q~~~  144 (154)
                      +|..|+.++.....+++..+..+
T Consensus       112 v~~~a~~~L~~l~~~~~~~~~~~  134 (252)
T 4db8_A          112 ILQEALWALSNIASGGNEQIQAV  134 (252)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCchHHHHH
Confidence            88889999888877766553443

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=93.37  E-value=0.31  Score=39.53  Aligned_cols=85  Identities=7%  Similarity=0.103  Sum_probs=61.4

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcch
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYP  121 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~  121 (154)
                      +.+.+.+.+.|++..++++.-++  ...+|-.|+.+++.+..+++.+++.+..-.+         +..|+.++.+...-+
T Consensus        97 ~~~~~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~---------i~~L~~~l~~~~~~~  165 (450)
T 2jdq_A           97 SLQTRIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNI---------LPPLLQLFSKQNRLT  165 (450)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC---------HHHHHHHTTSCCCHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCC---------HHHHHHHhcCCCCHH
Confidence            45566778899999999987654  6789999999999999999888887654222         222344444334567


Q ss_pred             hHHHHHHHHHHHhccC
Q psy13327        122 LRCSVLYCFLCYLYRN  137 (154)
Q Consensus       122 lR~Aa~~c~kay~~~N  137 (154)
                      +|..|+.|+..+..+.
T Consensus       166 v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          166 MTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            7888888888777654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=92.49  E-value=1.6  Score=35.28  Aligned_cols=89  Identities=17%  Similarity=0.175  Sum_probs=62.9

Q ss_pred             HHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhH
Q psy13327         44 CQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLR  123 (154)
Q Consensus        44 nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR  123 (154)
                      ....+.+.|++..++++.-++  ...+|.+|+.+++.+.+|++...+.+.+-.         ++-.|+.++.+. ..++|
T Consensus       268 ~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~---------~l~~L~~~l~~~-~~~v~  335 (450)
T 2jdq_A          268 QTQVILNCSALQSLLHLLSSP--KESIKKEACWTISNITAGNRAQIQTVIDAN---------IFPALISILQTA-EFRTR  335 (450)
T ss_dssp             HHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---------HHHHHHHHHHHS-CHHHH
T ss_pred             HHHHHHHCccHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---------CHHHHHHHHhcC-CHHHH
Confidence            344567889999999987654  578999999999999999987766554311         222344444333 56899


Q ss_pred             HHHHHHHHHHhcc-ChhhHHHH
Q psy13327        124 CSVLYCFLCYLYR-NENNQAKI  144 (154)
Q Consensus       124 ~Aa~~c~kay~~~-N~~~q~~~  144 (154)
                      .+|++++..+..+ +++....+
T Consensus       336 ~~a~~~L~~l~~~~~~~~~~~l  357 (450)
T 2jdq_A          336 KEAAWAITNATSGGSAEQIKYL  357 (450)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHH
Confidence            9999999998876 44443333

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=92.31  E-value=0.99  Score=37.46  Aligned_cols=93  Identities=14%  Similarity=0.180  Sum_probs=71.4

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcch
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYP  121 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~  121 (154)
                      +.++..+.+.|.+..++++.-++.  ..++..|+.+++.+..+++..++.+.+-.         .+-.|+.++.+. ..+
T Consensus        91 ~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g---------~i~~L~~ll~~~-~~~  158 (529)
T 1jdh_A           91 REGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAG---------GLQKMVALLNKT-NVK  158 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHHHHT---------HHHHHHHGGGCC-CHH
T ss_pred             chhHHHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcchHHHHHHcC---------CHHHHHHHHhcC-CHH
Confidence            458888999999999999876543  78999999999999998877777664322         233355555543 467


Q ss_pred             hHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        122 LRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       122 lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                      .|.+++.|+..+..+|++.+..+++
T Consensus       159 ~~~~~~~~L~~la~~~~~~~~~i~~  183 (529)
T 1jdh_A          159 FLAITTDCLQILAYGNQESKLIILA  183 (529)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            8899999999999999988887765

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=92.17  E-value=1.7  Score=36.65  Aligned_cols=92  Identities=14%  Similarity=0.233  Sum_probs=68.4

Q ss_pred             HHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhH
Q psy13327         44 CQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLR  123 (154)
Q Consensus        44 nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR  123 (154)
                      ....+.+.|++..|+.+.-++  ...|+..|+.+++.+..|+....+.+-+-         .++..|+.++.+.+..++|
T Consensus       278 ~~~~~~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~---------~~l~~L~~lL~~~~~~~v~  346 (528)
T 4b8j_A          278 KIQAVIEAGVCPRLVELLLHP--SPSVLIPALRTVGNIVTGDDAQTQCIIDH---------QALPCLLSLLTQNLKKSIK  346 (528)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHTT---------THHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHcCHHHHHHHHHcCC--ChhHHHHHHHHHHHHHcCCHHHHHHHHHh---------hhHHHHHHHHcCCCcHHHH
Confidence            345677889999999998765  46899999999999999998877665432         1233344555454467889


Q ss_pred             HHHHHHHHHHhccChhhHHHHHH
Q psy13327        124 CSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       124 ~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                      ..|+.++.....++++....+++
T Consensus       347 ~~A~~~L~nl~~~~~~~~~~~~~  369 (528)
T 4b8j_A          347 KEACWTISNITAGNKDQIQAVIN  369 (528)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999998888776655543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=91.85  E-value=0.81  Score=38.63  Aligned_cols=87  Identities=9%  Similarity=0.099  Sum_probs=60.6

Q ss_pred             chHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcc
Q psy13327         41 VSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSY  120 (154)
Q Consensus        41 t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f  120 (154)
                      ++.+...+.++|.+..++++.-++  ...||..|+.+++.+..+++.+++.+..-.+     -|.    |+.++.+...-
T Consensus       149 ~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~-----l~~----Ll~lL~~~~~~  217 (528)
T 4b8j_A          149 TSENTKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDLVLANGA-----LLP----LLAQLNEHTKL  217 (528)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTC-----HHH----HHHTCCTTCCH
T ss_pred             CHHHHHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHCCc-----HHH----HHHHHhcCCCH
Confidence            467888889999999999988764  5789999999999999999988887765322     111    23333222344


Q ss_pred             hhHHHHHHHHHHHhccCh
Q psy13327        121 PLRCSVLYCFLCYLYRNE  138 (154)
Q Consensus       121 ~lR~Aa~~c~kay~~~N~  138 (154)
                      .+|..|+.++...+.+.+
T Consensus       218 ~v~~~a~~~L~~L~~~~~  235 (528)
T 4b8j_A          218 SMLRNATWTLSNFCRGKP  235 (528)
T ss_dssp             HHHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            566666666666655543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=91.59  E-value=2.7  Score=35.54  Aligned_cols=108  Identities=9%  Similarity=0.128  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCC
Q psy13327         23 ALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPP  102 (154)
Q Consensus        23 ~~L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~  102 (154)
                      .++..+|-+++.+..     .+-..+.++|++..++++.-++ -...+|.+|+.+++.+..+++.....+..-.     .
T Consensus       106 ~A~~~L~~ll~~~~~-----~~~~~~~~~g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g-----~  174 (530)
T 1wa5_B          106 SATVKFRQILSREHR-----PPIDVVIQAGVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDAD-----A  174 (530)
T ss_dssp             HHHHHHHHHTCCSSS-----CSHHHHHHTTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-----C
T ss_pred             HHHHHHHHHhCCCCC-----ccHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC-----C
Confidence            345555655554311     1124577899999999876543 3578999999999999999988877664322     2


Q ss_pred             hHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        103 RQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       103 ~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                      -|.++-+|-    + ..-++|..|+.++.....++++.+..++.
T Consensus       175 i~~Lv~lL~----~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~  213 (530)
T 1wa5_B          175 VPLFIQLLY----T-GSVEVKEQAIWALGNVAGDSTDYRDYVLQ  213 (530)
T ss_dssp             HHHHHHHHH----H-CCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHc----C-CCHHHHHHHHHHHHHHhCCCccchHHHHH
Confidence            344444333    2 35678999999999999888777666543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=90.91  E-value=1.2  Score=37.04  Aligned_cols=94  Identities=14%  Similarity=0.181  Sum_probs=67.9

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHH---hHHHhhcccCCCCCChHHHHHHHHHHhhcCC
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHE---NQEHFANVYAPSDPPRQAIVVLLMSMVNQKQ  118 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~---nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~  118 (154)
                      +.+...+.+.|.+..++++.-.+.-...++..|+.+++.+..+++.   .|+.+....+         +-.|..++.+..
T Consensus       298 ~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~---------i~~L~~lL~~~~  368 (529)
T 1jdh_A          298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG---------LPVVVKLLHPPS  368 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTC---------HHHHHHTTSTTC
T ss_pred             HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCC---------hhHHHHHhcccc
Confidence            5688899999999999999887666689999999999999988765   3555543222         222455555544


Q ss_pred             cchhHHHHHHHHHHHhccChhhHHHHH
Q psy13327        119 SYPLRCSVLYCFLCYLYRNENNQAKII  145 (154)
Q Consensus       119 ~f~lR~Aa~~c~kay~~~N~~~q~~~i  145 (154)
                      ..++|.+|+.++.....+++ .|..++
T Consensus       369 ~~~v~~~a~~~l~nl~~~~~-~~~~~~  394 (529)
T 1jdh_A          369 HWPLIKATVGLIRNLALCPA-NHAPLR  394 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSGG-GHHHHH
T ss_pred             chHHHHHHHHHHHHHhcChh-hhHHHH
Confidence            45889999999988876544 444444

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=90.77  E-value=4.4  Score=37.43  Aligned_cols=128  Identities=16%  Similarity=0.145  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCc--------------cchHHHHHHHHhc---------HHHHHHHHhcCcCCChhhHHHHH
Q psy13327         19 SNILALLKVIRSLVTPGNPAQ--------------VVSSCQFVLQVSG---------ILGSLCNLLMAAGVPACILTETI   75 (154)
Q Consensus        19 ~Ni~~~L~ivrllV~p~n~~~--------------~t~~nQ~~l~q~g---------ll~~ll~Laf~~~~p~~Ir~eAL   75 (154)
                      ..-.++-.++|++.+++-+..              +-+.||..|.+--         ++..++. ...+.-+.++|++|.
T Consensus       308 ~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~-~~~~~~~~~lR~Aa~  386 (651)
T 3grl_A          308 FQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMS-MVNERQPFVLRCAVL  386 (651)
T ss_dssp             HHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHH-HTCTTSCHHHHHHHH
T ss_pred             HHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHH-HhcccccHHHHHHHH
Confidence            333445578898888764311              3368999998743         4444433 345677899999999


Q ss_pred             HHHHHHHhcCHHhHHHhhcccCCCCC-----ChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHHHhc
Q psy13327         76 NTVAEIIRSNHENQEHFANVYAPSDP-----PRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATLL  149 (154)
Q Consensus        76 ~t~adlIrgn~~nQe~fa~~~vps~p-----~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tll  149 (154)
                      .+..-...+|...|..+.+-.+|+..     +.+ .-.+|..-.-+..++..=+ |+-+|---+++|++.|..+..--+
T Consensus       387 ~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s-~g~ll~~~l~s~d~~~~wf-Aavil~hll~~n~~~K~~~l~v~l  463 (651)
T 3grl_A          387 YCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVS-AGQLLCGGLFSTDSLSNWC-AAVALAHALQENATQKEQLLRVQL  463 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSC-HHHHHHHHHTSSCHHHHHH-HHHHHHHHHTTCHHHHHHHTTCBC
T ss_pred             HHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCC-cchhhhhhhccCchHHHHH-HHHHHHHHHcCCHHHHHHHHhCcc
Confidence            99999999999999999999888532     122 2223332222456666556 556677778899999987765433

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=90.56  E-value=1.4  Score=37.39  Aligned_cols=85  Identities=9%  Similarity=0.111  Sum_probs=60.5

Q ss_pred             chHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcc
Q psy13327         41 VSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSY  120 (154)
Q Consensus        41 t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f  120 (154)
                      ++.+...+.+.|.+..++++.-++  ...||..|+.+++.+..+++.+++.+..-.+     -|.    |+.++.+ ..-
T Consensus       162 ~~~~~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~-----l~~----L~~ll~~-~~~  229 (530)
T 1wa5_B          162 TSAQTKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNA-----MEP----ILGLFNS-NKP  229 (530)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC-----HHH----HHHGGGS-CCH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCc-----HHH----HHHHhcc-CCH
Confidence            356777888999999999988753  6789999999999999999888887654322     122    3333333 345


Q ss_pred             hhHHHHHHHHHHHhccC
Q psy13327        121 PLRCSVLYCFLCYLYRN  137 (154)
Q Consensus       121 ~lR~Aa~~c~kay~~~N  137 (154)
                      ++|..|+.|+.....+.
T Consensus       230 ~v~~~a~~~L~~L~~~~  246 (530)
T 1wa5_B          230 SLIRTATWTLSNLCRGK  246 (530)
T ss_dssp             HHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            66777777777666544

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=90.44  E-value=1.6  Score=38.22  Aligned_cols=93  Identities=14%  Similarity=0.185  Sum_probs=70.4

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcch
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYP  121 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~  121 (154)
                      ..+...+.+.|.+..++++.-++  ...++..|+.+++.+..++...+..+.+-.         .+-.|+.++.+.. -+
T Consensus        88 ~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g---------~i~~Lv~lL~~~~-~~  155 (644)
T 2z6h_A           88 REGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAG---------GLQKMVALLNKTN-VK  155 (644)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---------HHHHHHHGGGCCC-HH
T ss_pred             hhhHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcchhHHHHHHCC---------ChHHHHHHHCcCC-HH
Confidence            34788889999999999987654  478999999999999998876666554321         2334555555553 37


Q ss_pred             hHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        122 LRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       122 lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                      +|.+++.|+.....+|++.+..+++
T Consensus       156 ~~~~a~~~L~~La~~~~~~~~~i~~  180 (644)
T 2z6h_A          156 FLAITTDCLQILAYGNQESKLIILA  180 (644)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            8899999999988889888877654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=90.02  E-value=1.2  Score=37.19  Aligned_cols=90  Identities=13%  Similarity=0.141  Sum_probs=71.3

Q ss_pred             chHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcc
Q psy13327         41 VSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSY  120 (154)
Q Consensus        41 t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f  120 (154)
                      ...++..+.++|.+..|+++.-+  -...++.+|..+++.+-.|++.++..+.+--         .+-.|..++.++ ..
T Consensus       252 ~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G---------~i~~Lv~LL~s~-~~  319 (354)
T 3nmw_A          252 NEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACGTLWNLSARNPKDQEALWDMG---------AVSMLKNLIHSK-HK  319 (354)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT---------HHHHHHTTTTCS-SH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcC--CChHHHHHHHHHHHHHhCCCHHHHHHHHHCC---------CHHHHHHHHhCC-CH
Confidence            45678889999999999999875  3467999999999999999999988875432         223355555555 56


Q ss_pred             hhHHHHHHHHHHHhccChhhHH
Q psy13327        121 PLRCSVLYCFLCYLYRNENNQA  142 (154)
Q Consensus       121 ~lR~Aa~~c~kay~~~N~~~q~  142 (154)
                      ++|-.|+..+...+.++++-+.
T Consensus       320 ~i~~~A~~aL~nL~~~~~~~~~  341 (354)
T 3nmw_A          320 MIAMGSAAALRNLMANRPAKYK  341 (354)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHh
Confidence            8899999999999999888655

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=87.85  E-value=11  Score=32.04  Aligned_cols=108  Identities=9%  Similarity=0.075  Sum_probs=76.7

Q ss_pred             HHHHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCC
Q psy13327         23 ALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPP  102 (154)
Q Consensus        23 ~~L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~  102 (154)
                      .++.-+|-|++.+..    +.- ..+.++|++..|+++.-.+ -...++-+|..+++.+-.|++.+...+..--      
T Consensus        95 ~a~~~~rklLs~~~~----~~i-~~ii~~G~ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~G------  162 (529)
T 3tpo_A           95 QATQAARKLLSREKQ----PPI-DNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGG------  162 (529)
T ss_dssp             HHHHHHHHHHTSSSC----CCH-HHHHHTTHHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHcCCCC----chH-HHHHHCCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC------
Confidence            456677777765421    222 3467899999999987543 4568999999999999999998876554321      


Q ss_pred             hHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        103 RQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       103 ~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                         .+..|+.++.+. .-++|..|+.++.....++++.|..+++
T Consensus       163 ---aip~Lv~LL~s~-~~~v~e~A~~aL~nLa~~~~~~r~~i~~  202 (529)
T 3tpo_A          163 ---AIPAFISLLASP-HAHISEQAVWALGNIAGAGSAFRDLVIK  202 (529)
T ss_dssp             ---HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---CHHHHHHHHcCC-CHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence               222344455444 4678899999999888888988887754

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=87.31  E-value=12  Score=31.78  Aligned_cols=108  Identities=9%  Similarity=0.082  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCC
Q psy13327         23 ALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPP  102 (154)
Q Consensus        23 ~~L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~  102 (154)
                      -+..-+|-+++...    .+.- ..+.++|++-.|.++.-.+. ...++-+|..+++.+-.|++.+.....+--      
T Consensus        76 ~a~~~~rklls~e~----~ppi-~~ii~~G~ip~LV~lL~~~~-~~~lq~~Aa~aL~nias~~~e~~~~vv~~G------  143 (510)
T 3ul1_B           76 QATQAARKLLSREK----QPPI-DNIIRAGLIPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQTKAVVDGG------  143 (510)
T ss_dssp             HHHHHHHHHHTCSS----CCCH-HHHHHTTHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTT------
T ss_pred             HHHHHHHHHhcCCC----CchH-HHHHHCCCHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCC------
Confidence            35566676666542    1222 34678999999999875443 457999999999999999999887664321      


Q ss_pred             hHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        103 RQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       103 ~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                         .+-.|+.++.+. .-++|..|+.++.-...++++.|..+++
T Consensus       144 ---aIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~  183 (510)
T 3ul1_B          144 ---AIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIK  183 (510)
T ss_dssp             ---HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---CHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence               122344444443 5678999999999888888888877654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=86.67  E-value=3.8  Score=37.31  Aligned_cols=93  Identities=15%  Similarity=0.207  Sum_probs=70.1

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcch
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYP  121 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~  121 (154)
                      ..|...+.+.|.+..|+++.=+.  ...++-+|+.+++.+..+++..+..+.+-.         ++-.|+.++.+. ..+
T Consensus       224 ~~~~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g---------~v~~Lv~lL~~~-~~~  291 (780)
T 2z6g_A          224 REGLLAIFKSGGIPALVNMLGSP--VDSVLFHAITTLHNLLLHQEGAKMAVRLAG---------GLQKMVALLNKT-NVK  291 (780)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---------HHHHHHHGGGCC-CHH
T ss_pred             chhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHcC---------CHHHHHHHHhcC-CHH
Confidence            45677888899999999988654  478999999999999998877766654321         233355555443 457


Q ss_pred             hHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        122 LRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       122 lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                      +|..|+.|+.....+|++++..+++
T Consensus       292 v~~~a~~aL~~La~~~~e~~~~i~~  316 (780)
T 2z6g_A          292 FLAITTDCLQILAYGNQESKLIILA  316 (780)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHH
Confidence            7888999999888899988887654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=85.47  E-value=3.8  Score=35.65  Aligned_cols=87  Identities=14%  Similarity=0.151  Sum_probs=68.2

Q ss_pred             chHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcc
Q psy13327         41 VSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSY  120 (154)
Q Consensus        41 t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f  120 (154)
                      .+.+...+.++|.+..|+++.-+  -+..++.+|..+++.+-.|++.++..+.+--         .+-.|..++.++ ..
T Consensus       368 ~~~~~~~i~~~G~i~~Lv~LL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G---------~I~~Lv~LL~s~-~~  435 (458)
T 3nmz_A          368 NEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACGTLWNLSARNPKDQEALWDMG---------AVSMLKNLIHSK-HK  435 (458)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHSSC--SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHT---------HHHHHHTTTTCS-SH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcC--CChHHHHHHHHHHHHHHcCCHHHHHHHHHCC---------CHHHHHHHHhCC-CH
Confidence            45678889999999999999864  3567999999999999999999998876532         233355555554 56


Q ss_pred             hhHHHHHHHHHHHhccChh
Q psy13327        121 PLRCSVLYCFLCYLYRNEN  139 (154)
Q Consensus       121 ~lR~Aa~~c~kay~~~N~~  139 (154)
                      ++|-.|+..+...+.+||.
T Consensus       436 ~v~~~Aa~AL~nL~~~~p~  454 (458)
T 3nmz_A          436 MIAMGSAAALRNLMANRPA  454 (458)
T ss_dssp             HHHHHHHHHHHHHHTCCSC
T ss_pred             HHHHHHHHHHHHHHcCCHh
Confidence            7889999999999888864

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=84.98  E-value=13  Score=30.98  Aligned_cols=96  Identities=13%  Similarity=0.129  Sum_probs=64.7

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCC---
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQ---  118 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~---  118 (154)
                      ..|...+.++|.+..|+++...+. ...++..|+.++..+-.++..|+..+...    .+.-|.++    .++.+..   
T Consensus       160 ~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~----~Gai~~Lv----~lL~~~~~~~  230 (354)
T 3nmw_A          160 VNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAV----DGALAFLV----GTLTYRSQTN  230 (354)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHS----TTHHHHHH----HHTTCCCSSS
T ss_pred             HHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHh----cCcHHHHH----HHhccCCCcc
Confidence            468889999999999999877544 45788899999999988898888776531    12223333    3333322   


Q ss_pred             cchhHHHHHHHHH---HHhccChhhHHHHHH
Q psy13327        119 SYPLRCSVLYCFL---CYLYRNENNQAKIIA  146 (154)
Q Consensus       119 ~f~lR~Aa~~c~k---ay~~~N~~~q~~~i~  146 (154)
                      ..+++-.|+.++.   +|+.++++.+..+++
T Consensus       231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~  261 (354)
T 3nmw_A          231 TLAIIESGGGILRNVSSLIATNEDHRQILRE  261 (354)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence            2356666666665   344578888877654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=84.74  E-value=2.2  Score=38.95  Aligned_cols=94  Identities=13%  Similarity=0.172  Sum_probs=65.9

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHh---HHHhhcccCCCCCChHHHHHHHHHHhhcCC
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHEN---QEHFANVYAPSDPPRQAIVVLLMSMVNQKQ  118 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~n---Qe~fa~~~vps~p~~p~i~vLLl~~~~s~~  118 (154)
                      ..++..+.+.|.+..|+++...+..+..||..|+.+++.+-.+++..   |..+..-.     .    +-.|+.++.+.+
T Consensus       431 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~-----~----l~~L~~lL~~~~  501 (780)
T 2z6g_A          431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY-----G----LPVVVKLLHPPS  501 (780)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT-----C----HHHHHHTTSTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC-----C----HHHHHHHhcCCC
Confidence            56788889999999999999876666799999999999998776553   33332211     1    222445555555


Q ss_pred             cchhHHHHHHHHHHHhccChhhHHHHH
Q psy13327        119 SYPLRCSVLYCFLCYLYRNENNQAKII  145 (154)
Q Consensus       119 ~f~lR~Aa~~c~kay~~~N~~~q~~~i  145 (154)
                      ..++|.+|+.++..... +++.|..++
T Consensus       502 ~~~v~~~A~~aL~nLa~-~~~~~~~i~  527 (780)
T 2z6g_A          502 HWPLIKATVGLIRNLAL-CPANHAPLR  527 (780)
T ss_dssp             CHHHHHHHHHHHHHHHS-SHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence            56889999999887765 445554444

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=84.22  E-value=15  Score=31.81  Aligned_cols=96  Identities=13%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCC---
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQ---  118 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~---  118 (154)
                      ..|...+.++|.+..|+++...+. ...++..|+.++..+-.++..|+..+...    .+.-|.++    .++.+..   
T Consensus       276 ~~~k~~I~~~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~~~nk~~I~~~----~Gal~~Lv----~LL~~~~~~~  346 (458)
T 3nmz_A          276 VNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAV----DGALAFLV----GTLTYRSQTN  346 (458)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHCHHHHHHHHHS----TTHHHHHH----HHTTCCCSSS
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHh----cCcHHHHH----HHhcCCCCcc
Confidence            468889999999999999987654 56788999999999998888898877531    11223333    3333222   


Q ss_pred             cchhHHHHHHHHH---HHhccChhhHHHHHH
Q psy13327        119 SYPLRCSVLYCFL---CYLYRNENNQAKIIA  146 (154)
Q Consensus       119 ~f~lR~Aa~~c~k---ay~~~N~~~q~~~i~  146 (154)
                      ..+++..|+.++.   +|+.++++.+..+++
T Consensus       347 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~  377 (458)
T 3nmz_A          347 TLAIIESGGGILRNVSSLIATNEDHRQILRE  377 (458)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence            2245666666655   355688888877654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=84.19  E-value=7.7  Score=33.09  Aligned_cols=56  Identities=14%  Similarity=0.097  Sum_probs=48.0

Q ss_pred             cchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccC
Q psy13327         40 VVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYA   97 (154)
Q Consensus        40 ~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~v   97 (154)
                      +++.+.+++.+.|.+..++++.-++  ...||-.|+.+++.+...++.+++.+.+--+
T Consensus       131 ~~~e~~~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~  186 (510)
T 3ul1_B          131 GTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGA  186 (510)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            4677889999999999999998653  5789999999999999999999998876544

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=83.23  E-value=4.5  Score=35.37  Aligned_cols=93  Identities=13%  Similarity=0.153  Sum_probs=64.9

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCH---HhHHHhhcccCCCCCChHHHHHHHHHHhhcCC
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNH---ENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQ  118 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~---~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~  118 (154)
                      +.++..+.+.|.+..|+++.-.......|+..|+.+++.+..+++   ..|..+....         .+-.|+.++.+..
T Consensus       295 ~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~---------~l~~L~~lL~~~~  365 (644)
T 2z6h_A          295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY---------GLPVVVKLLHPPS  365 (644)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT---------HHHHHHHTTSTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHcc---------ChHHHHHHhCccC
Confidence            567888999999999999988765556999999999999987655   3454333211         1223455555544


Q ss_pred             cchhHHHHHHHHHHHhccChhhHHHH
Q psy13327        119 SYPLRCSVLYCFLCYLYRNENNQAKI  144 (154)
Q Consensus       119 ~f~lR~Aa~~c~kay~~~N~~~q~~~  144 (154)
                      ..++|.+|+.++.....++ +.|..+
T Consensus       366 ~~~v~~~a~~~L~nLa~~~-~~~~~i  390 (644)
T 2z6h_A          366 HWPLIKATVGLIRNLALCP-ANHAPL  390 (644)
T ss_dssp             CHHHHHHHHHHHHHHTTSG-GGHHHH
T ss_pred             chHHHHHHHHHHHHHccCH-HHHHHH
Confidence            5688999999988776654 344444

>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus}

Probab=83.22  E-value=1.4  Score=39.71  Aligned_cols=54  Identities=22%  Similarity=0.238  Sum_probs=31.2

Q ss_pred             hHHHHHHHHhcHHHHHHHHhc----CcC-C--------C-----hhhHHHHHHHHHHHHhcCHHhHHHhhcc
Q psy13327         42 SSCQFVLQVSGILGSLCNLLM----AAG-V--------P-----ACILTETINTVAEIIRSNHENQEHFANV   95 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf----~~~-~--------p-----~~Ir~eAL~t~adlIrgn~~nQe~fa~~   95 (154)
                      ...|+.|..-|++..|+.+.-    .+. .        .     ..|-...-.-++-+||||..||.+|++-
T Consensus       472 r~RQkLlrEq~il~ll~~il~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~Y~LL~~~i~~N~~N~~y~~~~  543 (559)
T 2xoa_A          472 RNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIVNLLYELLASLIRGNRANCALFSTN  543 (559)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHTTSCC------CCCSTGGGTHHHHHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHHHhhhchHHHHHHHHHHhhccCchhhHHHhhcchhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            358999999999999999983    110 0        0     1255666677899999999999999984

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=82.73  E-value=11  Score=32.23  Aligned_cols=81  Identities=14%  Similarity=0.053  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCC-------------CccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHH
Q psy13327         15 AQRESNILALLKVIRSLVTPGNP-------------AQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEI   81 (154)
Q Consensus        15 ~Qk~~Ni~~~L~ivrllV~p~n~-------------~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adl   81 (154)
                      -+.+....++=.+|++|-..+++             ..+++.+.+++.+.|.+..++++.-++  ...++-.|+.+++.+
T Consensus       112 i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nL  189 (529)
T 3tpo_A          112 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNI  189 (529)
T ss_dssp             HHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence            34455544445566666444432             114567778999999999999977554  468999999999999


Q ss_pred             HhcCHHhHHHhhcccC
Q psy13327         82 IRSNHENQEHFANVYA   97 (154)
Q Consensus        82 Irgn~~nQe~fa~~~v   97 (154)
                      ...++.+++.+.+--+
T Consensus       190 a~~~~~~r~~i~~~g~  205 (529)
T 3tpo_A          190 AGAGSAFRDLVIKHGA  205 (529)
T ss_dssp             HTTCHHHHHHHHHTTC
T ss_pred             hccCHHHHHHHHHcCC
Confidence            9999999998866443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=81.55  E-value=2.1  Score=36.23  Aligned_cols=96  Identities=9%  Similarity=-0.017  Sum_probs=62.2

Q ss_pred             HHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHH
Q psy13327         45 QFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRC  124 (154)
Q Consensus        45 Q~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~  124 (154)
                      ...+|+.|.+..++.+.-.+.- ..++..|..+++.+.+|+......-++..+-....-|.+    +.++.+ ..+++|.
T Consensus       276 ~~~l~~~~~l~~L~~lL~~~~~-~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~L----v~LL~~-~~~~v~~  349 (457)
T 1xm9_A          276 SGWLYHSDAIRTYLNLMGKSKK-DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQI----ARLLQS-GNSDVVR  349 (457)
T ss_dssp             GGGGGSHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHH----HHHTTC-SCHHHHH
T ss_pred             HHHHhCcchHHHHHHHHhhcCC-HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHH----HHHHhC-CCHhHHH
Confidence            3578999999999998876543 589999999999999998543222222222122223433    333433 3678899


Q ss_pred             HHHHHHHHHhccChhhHHHHHHH
Q psy13327        125 SVLYCFLCYLYRNENNQAKIIAT  147 (154)
Q Consensus       125 Aa~~c~kay~~~N~~~q~~~i~T  147 (154)
                      .|+.++.-. ..+++.+..+-+.
T Consensus       350 ~A~~aL~nl-s~~~~~~~~i~~~  371 (457)
T 1xm9_A          350 SGASLLSNM-SRHPLLHRVMGNQ  371 (457)
T ss_dssp             HHHHHHHHH-HTSGGGHHHHHHH
T ss_pred             HHHHHHHHH-hcCHHHHHHHHHh
Confidence            999888755 4467777655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.79
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.27
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	94.71
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	92.44
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	92.11
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	91.5
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	84.2
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	83.63
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	82.87

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0057  Score=45.98  Aligned_cols=97  Identities=14%  Similarity=0.184  Sum_probs=75.0

Q ss_pred             cchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCc
Q psy13327         40 VVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQS  119 (154)
Q Consensus        40 ~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~  119 (154)
                      +.+.+|..+..+|.+..++++.- +..+..+|..|+.+++.++++++.++..|..-..         +-.|+.++.+. .
T Consensus        89 ~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~g---------i~~L~~lL~~~-~  157 (264)
T d1xqra1          89 NVAAIQEQVLGLGALRKLLRLLD-RDACDTVRVKALFAISCLVREQEAGLLQFLRLDG---------FSVLMRAMQQQ-V  157 (264)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHH-HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH---------HHHHHHHHHSS-C
T ss_pred             HHHHHHHHHHHcCchHHHHHHhh-cCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhh---------hhHHHHHHhcC-c
Confidence            45788999999999999999664 4456779999999999999999999999875432         22233444443 4


Q ss_pred             chhHHHHHHHHHHHhccChhhHHHHHHH
Q psy13327        120 YPLRCSVLYCFLCYLYRNENNQAKIIAT  147 (154)
Q Consensus       120 f~lR~Aa~~c~kay~~~N~~~q~~~i~T  147 (154)
                      -++|..++.++...+.++++.+..+++.
T Consensus       158 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (264)
T d1xqra1         158 QKLKVKSAFLLQNLLVGHPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            5678888999998888888888777653

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.011  Score=44.41  Aligned_cols=109  Identities=12%  Similarity=0.116  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCC
Q psy13327         21 ILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSD  100 (154)
Q Consensus        21 i~~~L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~  100 (154)
                      ...+|+.++-|+...       -|-..|.+.|-+..++.....+ -...||..|..+++.+.++|+..|..+..-.+   
T Consensus        34 ~~~Al~~L~~L~~~~-------d~a~~l~~~gg~~~ll~~ll~s-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~---  102 (264)
T d1xqra1          34 REGALELLADLCENM-------DNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGA---  102 (264)
T ss_dssp             HHHHHHHHHHHHTSH-------HHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH---
T ss_pred             HHHHHHHHHHHHcCH-------HHHHHHHHcCCHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc---
Confidence            455678888887543       2456788899888888766665 35789999999999999999999998876432   


Q ss_pred             CChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        101 PPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       101 p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                            +-.|+.++++.....+|..|++++...+.+|++++..+++
T Consensus       103 ------i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~  142 (264)
T d1xqra1         103 ------LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR  142 (264)
T ss_dssp             ------HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ------hHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHH
Confidence                  2224455555556788999999999999999999988754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.27  E-value=0.25  Score=37.53  Aligned_cols=129  Identities=11%  Similarity=0.123  Sum_probs=86.8

Q ss_pred             CCCCCCCCccccchHHHHHHHH---------HHHHHHHHHhcC-CCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhh
Q psy13327          1 MLHLPECESEEGWSAQRESNIL---------ALLKVIRSLVTP-GNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACI   70 (154)
Q Consensus         1 ~~~~~~~~e~~~W~~Qk~~Ni~---------~~L~ivrllV~p-~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~I   70 (154)
                      |-++-++++...|+-+...+..         -++..+|-+++- .|+      .-..+.++|++..|+++.-.+. ...|
T Consensus         1 ~~~~~~~~~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~------~~~~i~~~g~i~~Lv~lL~~~~-~~~v   73 (434)
T d1q1sc_           1 MADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP------PIDNIIRAGLIPKFVSFLGKTD-CSPI   73 (434)
T ss_dssp             CCCCCSTTSSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCC------CHHHHHHTTCHHHHHHHTTCGG-GHHH
T ss_pred             CCccccccchhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc------hHHHHHHCCCHHHHHHHHccCC-CHHH
Confidence            5567778888889755555443         245555544442 221      1246889999999999985433 4579


Q ss_pred             HHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHH
Q psy13327         71 LTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus        71 r~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                      +.+|..+++.+..+++.....+..-.         .+..|+.++.+. .-++|-.|+.+|.-..+++++.+..+.+
T Consensus        74 ~~~a~~~L~~la~~~~~~~~~i~~~~---------~i~~l~~~L~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~  139 (434)
T d1q1sc_          74 QFESAWALTNIASGTSEQTKAVVDGG---------AIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIK  139 (434)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHTT---------HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCChhhhhHhhhcc---------chhhhhhccccC-CHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            99999999999999988777765422         233344444443 4567788888888888888877765544

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.2  Score=36.99  Aligned_cols=86  Identities=8%  Similarity=0.035  Sum_probs=64.1

Q ss_pred             chHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcc
Q psy13327         41 VSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSY  120 (154)
Q Consensus        41 t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f  120 (154)
                      ...+|+.+.+.|.+..|.++. . .-...+|..|+.+++.+..+|+.+|..+.+-..     -|    .|+.+..+.+.-
T Consensus        33 ~~~~~~~i~~~g~i~~Lv~lL-~-~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~-----v~----~li~~l~~~~~~  101 (457)
T d1xm9a1          33 DESAKQQVYQLGGICKLVDLL-R-SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNG-----IR----EAVSLLRRTGNA  101 (457)
T ss_dssp             CSSHHHHHHHTTHHHHHHHHT-T-SSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTC-----HH----HHHHHHTTCCCH
T ss_pred             CHHHHHHHHHCCcHHHHHHHH-C-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-----hH----HHHHHHhccCcH
Confidence            467899999999999999985 3 345679999999999999999999999887543     11    233334344455


Q ss_pred             hhHHHHHHHHHHHhccC
Q psy13327        121 PLRCSVLYCFLCYLYRN  137 (154)
Q Consensus       121 ~lR~Aa~~c~kay~~~N  137 (154)
                      ++|..|+.++.....+.
T Consensus       102 ~~~~~a~~~l~~l~~~~  118 (457)
T d1xm9a1         102 EIQKQLTGLLWNLSSTD  118 (457)
T ss_dssp             HHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            67777777777765544

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.61  Score=36.85  Aligned_cols=93  Identities=14%  Similarity=0.175  Sum_probs=72.2

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcch
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYP  121 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~  121 (154)
                      ..++..+.++|.+..|+++.=  .-..+++..|+.+++.+-.+++..|..|..-.         .+..|+.++.+. ..+
T Consensus        91 ~~~~~~i~~~g~i~~Li~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g---------~i~~Lv~lL~~~-~~~  158 (529)
T d1jdha_          91 REGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG---------GLQKMVALLNKT-NVK  158 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT---------HHHHHHHGGGCC-CHH
T ss_pred             chhHHHHHHCCCHHHHHHHhC--CCCHHHHHHHHHHHHHhhcccchhhhHHHhcC---------CchHHHHHHHcc-ChH
Confidence            456788999999999999863  34568999999999999999999988875432         223355555544 468


Q ss_pred             hHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        122 LRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       122 lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                      +|..++.|+....+++++.+..++.
T Consensus       159 ~~~~a~~~L~~l~~~~~~~~~~~~~  183 (529)
T d1jdha_         159 FLAITTDCLQILAYGNQESKLIILA  183 (529)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHh
Confidence            8999999999998888888777654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.3  Score=35.95  Aligned_cols=79  Identities=5%  Similarity=0.021  Sum_probs=60.6

Q ss_pred             HHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhc
Q psy13327         56 SLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLY  135 (154)
Q Consensus        56 ~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~  135 (154)
                      .|+++.=  .-..+++..|..+++.+-.+|+.+|+.+.+.-.     -|.    |..++.+ ..-++|.+|+.|+....+
T Consensus         6 ~lv~~L~--~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~-----i~~----Lv~lL~~-~~~~v~~~a~~aL~~L~~   73 (457)
T d1xm9a1           6 KAVQYLS--SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGG-----ICK----LVDLLRS-PNQNVQQAAAGALRNLVF   73 (457)
T ss_dssp             HHHHHHH--SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTH-----HHH----HHHHTTS-SCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCc-----HHH----HHHHHCC-CCHHHHHHHHHHHHHHHc
Confidence            4555553  344789999999999999999999999986543     233    3344433 356789999999999999


Q ss_pred             cChhhHHHHHH
Q psy13327        136 RNENNQAKIIA  146 (154)
Q Consensus       136 ~N~~~q~~~i~  146 (154)
                      +|++.|..+++
T Consensus        74 ~~~~~~~~i~~   84 (457)
T d1xm9a1          74 RSTTNKLETRR   84 (457)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999888765

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.50  E-value=1.7  Score=34.01  Aligned_cols=110  Identities=10%  Similarity=0.149  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCC
Q psy13327         22 LALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDP  101 (154)
Q Consensus        22 ~~~L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p  101 (154)
                      ..++.-+|-+++..+.   .  .-..+.++|++..++++. ...-+..|+-+|+.+++.+..|++.....+..-.+    
T Consensus        94 ~~a~~~~r~~ls~~~~---~--~i~~ii~~g~i~~Lv~~l-~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~----  163 (503)
T d1wa5b_          94 LSATVKFRQILSREHR---P--PIDVVIQAGVVPRLVEFM-RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA----  163 (503)
T ss_dssp             HHHHHHHHHHTCCSSS---C--SHHHHHHTTCHHHHHHTT-STTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHhcCCC---c--hHHHHHHCCChHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCC----
Confidence            3455555555543321   1  235689999999999885 44567889999999999999999877776654332    


Q ss_pred             ChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHHH
Q psy13327        102 PRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIAT  147 (154)
Q Consensus       102 ~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~T  147 (154)
                       -|    ++..++++. ..++|..|+.|+.....++++.+..+++.
T Consensus       164 -i~----~l~~lL~s~-~~~i~~~a~~~L~nia~~~~~~r~~l~~~  203 (503)
T d1wa5b_         164 -VP----LFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQC  203 (503)
T ss_dssp             -HH----HHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             -hH----HHHHHhcCC-ChhHHHHHHHHHHHHhhhhHHHHHHHHhh
Confidence             22    333444333 45788999999988888888888877653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.20  E-value=6.4  Score=29.18  Aligned_cols=82  Identities=15%  Similarity=0.173  Sum_probs=59.8

Q ss_pred             HHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchh
Q psy13327         43 SCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPL  122 (154)
Q Consensus        43 ~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~l  122 (154)
                      .....+.+.|++..+.++.-  .-+..||..|+.+++.+.+++....+.+.+-.+         +-.++.+..+. .+++
T Consensus       263 ~~~~~~~~~~~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~---------i~~li~~l~~~-~~~v  330 (434)
T d1q1sc_         263 EQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL---------VPFLVGVLSKA-DFKT  330 (434)
T ss_dssp             HHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC---------HHHHHHHHHSS-CHHH
T ss_pred             HHHHHHHhccccchHHHhhc--ccchhhhHHHHHHHhhhccccchhHHHHhhhhh---------HHHHHHHHhcc-ChHH
Confidence            34556678899998888764  456689999999999999999988887765432         22344444333 5788


Q ss_pred             HHHHHHHHHHHhcc
Q psy13327        123 RCSVLYCFLCYLYR  136 (154)
Q Consensus       123 R~Aa~~c~kay~~~  136 (154)
                      |.+|+.++..+...
T Consensus       331 ~~~a~~~l~nl~~~  344 (434)
T d1q1sc_         331 QKEAAWAITNYTSG  344 (434)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            88888888877654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.63  E-value=8  Score=29.82  Aligned_cols=82  Identities=17%  Similarity=0.148  Sum_probs=57.6

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcch
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYP  121 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~  121 (154)
                      ......+.++|++..+..+.=  .-..+||.+++.+++.+..|++.....+.+-.+     -|.    ++.+.. ...++
T Consensus       320 ~~~~~~~~~~~~l~~l~~ll~--~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~-----l~~----li~~l~-~~~~~  387 (503)
T d1wa5b_         320 DLQTQVVINAGVLPALRLLLS--SPKENIKKEACWTISNITAGNTEQIQAVIDANL-----IPP----LVKLLE-VAEYK  387 (503)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC-----HHH----HHHHHH-HSCHH
T ss_pred             HHHHHhhhccchHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccHHHHHHHHHccc-----cch----hHHhcc-cCChh
Confidence            344556788999999888753  336789999999999999999988877765433     122    222222 23567


Q ss_pred             hHHHHHHHHHHHhc
Q psy13327        122 LRCSVLYCFLCYLY  135 (154)
Q Consensus       122 lR~Aa~~c~kay~~  135 (154)
                      +|..|++|+..+..
T Consensus       388 v~~~a~~~l~nl~~  401 (503)
T d1wa5b_         388 TKKEACWAISNASS  401 (503)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888876664

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.87  E-value=5.6  Score=30.91  Aligned_cols=93  Identities=16%  Similarity=0.148  Sum_probs=63.7

Q ss_pred             hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcch
Q psy13327         42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYP  121 (154)
Q Consensus        42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~  121 (154)
                      ..+|+.+.+.|.+..|+.+.=  .-...++..|..+++.+-.++...+..+.....     -+.++.+    ..+...-+
T Consensus       133 ~~~~~~~~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-----~~~L~~l----l~~~~~~~  201 (529)
T d1jdha_         133 EGAKMAVRLAGGLQKMVALLN--KTNVKFLAITTDCLQILAYGNQESKLIILASGG-----PQALVNI----MRTYTYEK  201 (529)
T ss_dssp             TTHHHHHHHHTHHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-----HHHHHHH----HHHCCCHH
T ss_pred             chhhhHHHhcCCchHHHHHHH--ccChHHHHHHHHHHHHHhhhhhHHHHHHHhccc-----chHHHHH----HHhhhhHH
Confidence            447788899999999999763  345789999999999999999988877765433     1222222    22233345


Q ss_pred             hHHHHHHHHHHHhccChhhHHHHHH
Q psy13327        122 LRCSVLYCFLCYLYRNENNQAKIIA  146 (154)
Q Consensus       122 lR~Aa~~c~kay~~~N~~~q~~~i~  146 (154)
                      +|..+..++. .+..+++.+..+++
T Consensus       202 ~~~~~~~~l~-~ls~~~~~~~~~~~  225 (529)
T d1jdha_         202 LLWTTSRVLK-VLSVCSSNKPAIVE  225 (529)
T ss_dssp             HHHHHHHHHH-HHTTSTTHHHHHHH
T ss_pred             HHHHHHHHHh-hhhccccccchhhh
Confidence            6777777765 44566777766654