Psyllid ID: psy13351
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 837 | 2.2.26 [Sep-21-2011] | |||||||
| A6SZQ1 | 248 | 30S ribosomal protein S2 | yes | N/A | 0.260 | 0.879 | 0.701 | 9e-96 | |
| A4G4S1 | 248 | 30S ribosomal protein S2 | yes | N/A | 0.260 | 0.879 | 0.697 | 1e-95 | |
| B2UB06 | 247 | 30S ribosomal protein S2 | yes | N/A | 0.259 | 0.878 | 0.682 | 6e-88 | |
| Q0KA16 | 248 | 30S ribosomal protein S2 | yes | N/A | 0.259 | 0.875 | 0.658 | 8e-87 | |
| Q8XZJ1 | 247 | 30S ribosomal protein S2 | yes | N/A | 0.259 | 0.878 | 0.672 | 2e-86 | |
| B3R2B7 | 247 | 30S ribosomal protein S2 | yes | N/A | 0.259 | 0.878 | 0.663 | 3e-86 | |
| Q2L162 | 249 | 30S ribosomal protein S2 | yes | N/A | 0.259 | 0.871 | 0.658 | 3e-86 | |
| Q470D7 | 247 | 30S ribosomal protein S2 | yes | N/A | 0.259 | 0.878 | 0.663 | 4e-86 | |
| Q1LNF8 | 247 | 30S ribosomal protein S2 | yes | N/A | 0.259 | 0.878 | 0.663 | 2e-85 | |
| Q63T12 | 246 | 30S ribosomal protein S2 | yes | N/A | 0.259 | 0.882 | 0.663 | 2e-85 |
| >sp|A6SZQ1|RS2_JANMA 30S ribosomal protein S2 OS=Janthinobacterium sp. (strain Marseille) GN=rpsB PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 352 bits (902), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 153/218 (70%), Positives = 192/218 (88%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ +IFGHRN+IHI+NLEKT+ MY++A++YI QL ++GT+L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPFIFGHRNRIHIVNLEKTMGMYQEAMKYIRQLSSNRGTVL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQAR IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKEM+ I +GS++K
Sbjct: 68 FVGTKRQARETIAAEAQRAGMPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASIEDGSVQK 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
LSKKEAL+F R+++KL + IGGIK+M IPDAIF++DVGYHKGA++EA KL IP+IGVVD
Sbjct: 128 LSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218
TNHSP+G+ YVIPGNDDS+K+I LY +G+ DA L+ +
Sbjct: 188 TNHSPEGVTYVIPGNDDSSKAIMLYARGVADAILEGRA 225
|
Janthinobacterium sp. (strain Marseille) (taxid: 375286) |
| >sp|A4G4S1|RS2_HERAR 30S ribosomal protein S2 OS=Herminiimonas arsenicoxydans GN=rpsB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (900), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 152/218 (69%), Positives = 191/218 (87%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ YIFGHRN+IHI+NLEKTL MY++A++YI QL ++GT+L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPYIFGHRNRIHIVNLEKTLGMYQEAMKYIKQLSSNRGTVL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQAR IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKE++ + +GS+ K
Sbjct: 68 FVGTKRQARETIAAEAARAGMPYVDQRWLGGMLTNFKTIKTSIKRLKELEALVEDGSMEK 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
LSKKEAL+F R+++KL + IGGIK+M IPDAIF++DVGYHKGA++EA KL IP+IGVVD
Sbjct: 128 LSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218
TNHSP+G+ Y+IPGNDDS+K+I LY +G+ DA L+ +
Sbjct: 188 TNHSPEGVAYIIPGNDDSSKAIMLYARGVADAILEGRA 225
|
Herminiimonas arsenicoxydans (taxid: 204773) |
| >sp|B2UB06|RS2_RALPJ 30S ribosomal protein S2 OS=Ralstonia pickettii (strain 12J) GN=rpsB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (834), Expect = 6e-88, Method: Composition-based stats.
Identities = 148/217 (68%), Positives = 186/217 (85%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL MY+ A++Y+ QL ++GT+L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMYQDALKYVRQLAANRGTIL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQ+R ++A EA RAGMPF+D RWLGG+LTNFKT+KTSI+RLK+M++ G+
Sbjct: 68 FVGTKRQSREILAEEAARAGMPFVDSRWLGGMLTNFKTVKTSIKRLKDMEVAKEAGATET 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
+SKKEAL+F R+ KL + IGGIK+M IPDAIF++DVGYHK AV+EA KL IP+IGVVD
Sbjct: 128 MSKKEALMFEREMDKLVKSIGGIKDMGGIPDAIFVVDVGYHKIAVTEAAKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 188 TNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224
|
Ralstonia pickettii (strain 12J) (taxid: 402626) |
| >sp|Q0KA16|RS2_CUPNH 30S ribosomal protein S2 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (825), Expect = 8e-87, Method: Composition-based stats.
Identities = 143/217 (65%), Positives = 186/217 (85%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAG HFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL M++ A++Y+ QL ++GT+L
Sbjct: 8 MLEAGCHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFQDAMKYVRQLAANRGTIL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+KTSI+RLK+M+ G++
Sbjct: 68 FVGTKRQSREILAEEAGRAGMPYVDARWLGGMLTNFKTVKTSIKRLKDMEAAKEAGALET 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
+SKKEAL+F R+ +KL + IGGIK+M +PDAIF++DVGYHK AV+EA KL +P+IGVVD
Sbjct: 128 MSKKEALMFEREMLKLEKSIGGIKDMGGVPDAIFVVDVGYHKIAVTEANKLGVPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 188 TNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224
|
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) |
| >sp|Q8XZJ1|RS2_RALSO 30S ribosomal protein S2 OS=Ralstonia solanacearum (strain GMI1000) GN=rpsB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (821), Expect = 2e-86, Method: Composition-based stats.
Identities = 146/217 (67%), Positives = 184/217 (84%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL MY A++Y+ QL ++GT+L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMYLDALKYVRQLAANRGTIL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+K SI+RLK+M+ G++
Sbjct: 68 FVGTKRQSREILAEEAARAGMPYVDSRWLGGMLTNFKTVKISIKRLKDMEAAKEAGALES 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
+SKKEAL+F R+ KL + IGGIK+M IPDAIF++DVGYHK AV+EA KL IP+IGVVD
Sbjct: 128 MSKKEALMFEREMEKLEKSIGGIKDMGGIPDAIFVVDVGYHKIAVTEAAKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 188 TNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224
|
Ralstonia solanacearum (strain GMI1000) (taxid: 267608) |
| >sp|B3R2B7|RS2_CUPTR 30S ribosomal protein S2 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (820), Expect = 3e-86, Method: Composition-based stats.
Identities = 144/217 (66%), Positives = 185/217 (85%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAG HFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL M++ A++Y+ QL ++GT+L
Sbjct: 8 MLEAGCHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFQDAMKYVRQLAANRGTIL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+KTSI+RLK+M+ G++
Sbjct: 68 FVGTKRQSREILAEEAGRAGMPYVDARWLGGMLTNFKTVKTSIKRLKDMEAAKEAGALET 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
+SKKEAL+F R+ +KL + IGGIK M +PDAIF++DVGYHK AV+EA KL IP+IGVVD
Sbjct: 128 MSKKEALMFEREMIKLEKSIGGIKEMGGVPDAIFVVDVGYHKIAVTEANKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 188 TNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224
|
Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546) |
| >sp|Q2L162|RS2_BORA1 30S ribosomal protein S2 OS=Bordetella avium (strain 197N) GN=rpsB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (820), Expect = 3e-86, Method: Composition-based stats.
Identities = 143/217 (65%), Positives = 183/217 (84%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTR+WNPKM+ YIFGHRNKIHIINLE+T+ Y++A +++ QL G +L
Sbjct: 7 MLEAGVHFGHQTRYWNPKMAPYIFGHRNKIHIINLEQTVAKYQEATKFVKQLAARGGNIL 66
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKR AR ++A EA R GMPF+D RWLGG+LTNFKT+K+SI+RLKEM++ + +GS+ +
Sbjct: 67 FVGTKRAARELVATEAERCGMPFVDARWLGGMLTNFKTVKSSIKRLKEMEVMVADGSVER 126
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L+KKE LLF R+ KLN+ IGGIK+MN +PDA+F+IDVGYHK AV+EA L IP++ VVD
Sbjct: 127 LTKKEGLLFQRELDKLNKAIGGIKDMNGLPDALFVIDVGYHKIAVAEARTLGIPVVAVVD 186
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TNHSPDG++Y+IPGNDDSA++IALY KGI DA L+ +
Sbjct: 187 TNHSPDGVDYIIPGNDDSARAIALYAKGIADAVLEGR 223
|
Bordetella avium (strain 197N) (taxid: 360910) |
| >sp|Q470D7|RS2_CUPPJ 30S ribosomal protein S2 OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=rpsB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (819), Expect = 4e-86, Method: Composition-based stats.
Identities = 144/217 (66%), Positives = 185/217 (85%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAG HFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL M++ A++Y+ QL ++GT++
Sbjct: 8 MLEAGCHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFQDALKYVRQLAANRGTIM 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+KTSI+RLK+M+ G++
Sbjct: 68 FVGTKRQSREILAEEAGRAGMPYVDARWLGGMLTNFKTVKTSIKRLKDMEAAKEAGALDT 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
+SKKEAL+F R+ +KL + IGGIK M IPDAIF++DVGYHK AV+EA KL IP+IGVVD
Sbjct: 128 MSKKEALMFEREMIKLEKSIGGIKEMGGIPDAIFVVDVGYHKIAVTEANKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 188 TNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224
|
Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198) |
| >sp|Q1LNF8|RS2_RALME 30S ribosomal protein S2 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rpsB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (814), Expect = 2e-85, Method: Composition-based stats.
Identities = 144/217 (66%), Positives = 184/217 (84%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAG HFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL M++ A++Y+ QL ++GT+L
Sbjct: 8 MLEAGCHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFQDALKYVRQLAANRGTVL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+K SI+RLK+M+ G++
Sbjct: 68 FVGTKRQSREILAEEAGRAGMPYVDARWLGGMLTNFKTVKISIKRLKDMEAAKEAGALET 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
+SKKEAL+F R+ KL + IGGIK+M IPDAIF++DVGYHK AV+EA KL IP+IGVVD
Sbjct: 128 MSKKEALMFEREMEKLEKSIGGIKDMGGIPDAIFVVDVGYHKIAVTEANKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 188 TNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224
|
Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264) |
| >sp|Q63T12|RS2_BURPS 30S ribosomal protein S2 OS=Burkholderia pseudomallei (strain K96243) GN=rpsB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats.
Identities = 144/217 (66%), Positives = 184/217 (84%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL MY A++Y+ QL ++GT+L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMYNDALKYVRQLAANRGTIL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQ+R IA EA+RAGMP+++ RWLGG+LTNFKT+K SI+RLK+M+ + G + K
Sbjct: 68 FVGTKRQSRDTIAQEALRAGMPYVNARWLGGMLTNFKTLKVSIKRLKDMEAAVEAGELEK 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
+SKKEALLF R+ KL + IGG+K+M IPDAIF++DVGYHK AV+EA KL +P+I VVD
Sbjct: 128 MSKKEALLFEREIAKLQKSIGGVKDMGGIPDAIFVVDVGYHKIAVTEANKLGVPVIAVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TNHSP+G++YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 188 TNHSPEGVDYVIPGNDDSSKAVALYAQGVADAILEGR 224
|
Burkholderia pseudomallei (strain K96243) (taxid: 272560) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 837 | ||||||
| 329912037 | 248 | SSU ribosomal protein S2p (SAe) [Oxaloba | 0.273 | 0.923 | 0.672 | 2e-94 | |
| 399017266 | 250 | ribosomal protein S2 [Herbaspirillum sp. | 0.260 | 0.872 | 0.715 | 2e-94 | |
| 152980757 | 264 | 30S ribosomal protein S2 [Janthinobacter | 0.260 | 0.825 | 0.701 | 6e-94 | |
| 209573709 | 248 | RecName: Full=30S ribosomal protein S2 | 0.260 | 0.879 | 0.701 | 6e-94 | |
| 340786521 | 250 | 30S ribosomal protein S2 [Collimonas fun | 0.260 | 0.872 | 0.706 | 9e-94 | |
| 134094560 | 248 | 30S ribosomal protein S2 [Herminiimonas | 0.260 | 0.879 | 0.697 | 1e-93 | |
| 398836105 | 247 | ribosomal protein S2 [Herbaspirillum sp. | 0.260 | 0.882 | 0.706 | 3e-93 | |
| 237747785 | 246 | 30S ribosomal subunit protein S2 [Oxalob | 0.274 | 0.934 | 0.661 | 2e-92 | |
| 409405990 | 259 | 30S ribosomal protein S2 [Herbaspirillum | 0.259 | 0.837 | 0.714 | 2e-90 | |
| 300311493 | 246 | 30S ribosomal protein S2 [Herbaspirillum | 0.259 | 0.882 | 0.714 | 7e-90 |
| >gi|329912037|ref|ZP_08275648.1| SSU ribosomal protein S2p (SAe) [Oxalobacteraceae bacterium IMCC9480] gi|327545760|gb|EGF30894.1| SSU ribosomal protein S2p (SAe) [Oxalobacteraceae bacterium IMCC9480] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 158/235 (67%), Positives = 195/235 (82%), Gaps = 6/235 (2%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ YIFGHRNKIHI+NLEKTL MY+ A++YI QL ++GT+L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPYIFGHRNKIHIVNLEKTLAMYQDAMKYIQQLSSNRGTIL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
VGTKRQAR ++A EA RAGMPF+DQRWLGG+LTNFKTIKTSI+RLKEM+ I +GS+ K
Sbjct: 68 MVGTKRQAREIVAAEAARAGMPFVDQRWLGGMLTNFKTIKTSIKRLKEMEASIADGSVEK 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
LSKKE L+F R+ +KL + IGGIK+M IPDAIF++DVGYHKGA++EA KL IP+IGVVD
Sbjct: 128 LSKKEGLMFEREMIKLQKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKK 235
TNHSP+G+ Y+IPGNDDS+K+I LY +G+ DA L E R+ +L ++E K
Sbjct: 188 TNHSPEGVTYIIPGNDDSSKAIMLYARGVADAIL------EGRASSLNDVVEAVK 236
|
Source: Oxalobacteraceae bacterium IMCC9480 Species: Oxalobacteraceae bacterium IMCC9480 Genus: Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|399017266|ref|ZP_10719463.1| ribosomal protein S2 [Herbaspirillum sp. CF444] gi|398104037|gb|EJL94194.1| ribosomal protein S2 [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 156/218 (71%), Positives = 190/218 (87%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY++A++Y+ QL ++GT+L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEALKYVRQLSSNRGTIL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQAR +A EA RAG+P++DQRWLGG+LTNFKTIKTSI+RLK+M+ I +GS K
Sbjct: 68 FVGTKRQARETVAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAIADGSNEK 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
LSKKEALLF R+Q KL + IGGIK+M IPDAIF+IDVGYHKGA++EA KL IP+IGVVD
Sbjct: 128 LSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218
TNHSP+G+ YVIPGNDDSAK+IALY +G+ DA L+ +
Sbjct: 188 TNHSPEGVTYVIPGNDDSAKAIALYARGVADAILEGRA 225
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152980757|ref|YP_001353748.1| 30S ribosomal protein S2 [Janthinobacterium sp. Marseille] gi|151280834|gb|ABR89244.1| small subunit ribosomal protein S2 [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 352 bits (902), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 153/218 (70%), Positives = 192/218 (88%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ +IFGHRN+IHI+NLEKT+ MY++A++YI QL ++GT+L
Sbjct: 24 MLEAGVHFGHQTRFWNPKMAPFIFGHRNRIHIVNLEKTMGMYQEAMKYIRQLSSNRGTVL 83
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQAR IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKEM+ I +GS++K
Sbjct: 84 FVGTKRQARETIAAEAQRAGMPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASIEDGSVQK 143
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
LSKKEAL+F R+++KL + IGGIK+M IPDAIF++DVGYHKGA++EA KL IP+IGVVD
Sbjct: 144 LSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVVD 203
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218
TNHSP+G+ YVIPGNDDS+K+I LY +G+ DA L+ +
Sbjct: 204 TNHSPEGVTYVIPGNDDSSKAIMLYARGVADAILEGRA 241
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|209573709|sp|A6SZQ1.2|RS2_JANMA RecName: Full=30S ribosomal protein S2 | Back alignment and taxonomy information |
|---|
Score = 352 bits (902), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 153/218 (70%), Positives = 192/218 (88%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ +IFGHRN+IHI+NLEKT+ MY++A++YI QL ++GT+L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPFIFGHRNRIHIVNLEKTMGMYQEAMKYIRQLSSNRGTVL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQAR IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKEM+ I +GS++K
Sbjct: 68 FVGTKRQARETIAAEAQRAGMPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASIEDGSVQK 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
LSKKEAL+F R+++KL + IGGIK+M IPDAIF++DVGYHKGA++EA KL IP+IGVVD
Sbjct: 128 LSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218
TNHSP+G+ YVIPGNDDS+K+I LY +G+ DA L+ +
Sbjct: 188 TNHSPEGVTYVIPGNDDSSKAIMLYARGVADAILEGRA 225
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|340786521|ref|YP_004751986.1| 30S ribosomal protein S2 [Collimonas fungivorans Ter331] gi|340551788|gb|AEK61163.1| SSU ribosomal protein S2p (SAe) [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 351 bits (901), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 154/218 (70%), Positives = 189/218 (86%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY++A++YI QL ++G +L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAMKYIRQLSSNRGNIL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQAR ++A EA R+G PF+DQRWLGG+LTNFKTIKTSI+RLKEM+ I +GS+ K
Sbjct: 68 FVGTKRQAREIVAAEAARSGSPFVDQRWLGGMLTNFKTIKTSIKRLKEMEASIEDGSVEK 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
LSKKE L+F R+ +KL + IGGIK+M IPDAIF+IDVGYHKGA++EA KL IP+IGVVD
Sbjct: 128 LSKKEGLMFQRELIKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218
TNHSPDG+ YVIPGNDDS+K+IALY +G+ DA L+ +
Sbjct: 188 TNHSPDGVTYVIPGNDDSSKAIALYARGVADAILEGRA 225
|
Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134094560|ref|YP_001099635.1| 30S ribosomal protein S2 [Herminiimonas arsenicoxydans] gi|166225279|sp|A4G4S1.1|RS2_HERAR RecName: Full=30S ribosomal protein S2 gi|133738463|emb|CAL61508.1| 30S ribosomal subunit protein S2 [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 152/218 (69%), Positives = 191/218 (87%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ YIFGHRN+IHI+NLEKTL MY++A++YI QL ++GT+L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPYIFGHRNRIHIVNLEKTLGMYQEAMKYIKQLSSNRGTVL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQAR IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKE++ + +GS+ K
Sbjct: 68 FVGTKRQARETIAAEAARAGMPYVDQRWLGGMLTNFKTIKTSIKRLKELEALVEDGSMEK 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
LSKKEAL+F R+++KL + IGGIK+M IPDAIF++DVGYHKGA++EA KL IP+IGVVD
Sbjct: 128 LSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218
TNHSP+G+ Y+IPGNDDS+K+I LY +G+ DA L+ +
Sbjct: 188 TNHSPEGVAYIIPGNDDSSKAIMLYARGVADAILEGRA 225
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398836105|ref|ZP_10593454.1| ribosomal protein S2 [Herbaspirillum sp. YR522] gi|398213936|gb|EJN00522.1| ribosomal protein S2 [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 154/218 (70%), Positives = 190/218 (87%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL ++++A +Y+ QL ++GT+L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGLFQEATKYVRQLSSNRGTIL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQAR ++A EA RAG+PF+DQRWLGG+LTNFKTIKTSI+RLK+M+ I +GS+ K
Sbjct: 68 FVGTKRQAREILAGEAQRAGVPFVDQRWLGGMLTNFKTIKTSIKRLKDMEASIEDGSVEK 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
LSKKE LLF R+ KL + IGGIK+M IPDAIF+IDVGYHKGA++EA KL IP+IGVVD
Sbjct: 128 LSKKEGLLFRRELEKLQKSIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218
TNHSP+G+NY+IPGNDDSAK+IALY +GI DA L+ +
Sbjct: 188 TNHSPEGVNYIIPGNDDSAKAIALYARGIADAVLEGRA 225
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|237747785|ref|ZP_04578265.1| 30S ribosomal subunit protein S2 [Oxalobacter formigenes OXCC13] gi|229379147|gb|EEO29238.1| 30S ribosomal subunit protein S2 [Oxalobacter formigenes OXCC13] | Back alignment and taxonomy information |
|---|
Score = 347 bits (889), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 156/236 (66%), Positives = 192/236 (81%), Gaps = 6/236 (2%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY A+ YI QL ++GT+L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLAMYNDAMNYIRQLAANRGTIL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
VGTKRQAR +IA EA RAGMPF+DQRWLGG+LTNFKTIKTSI+RLK+M+ I +GS+ K
Sbjct: 68 MVGTKRQARDIIAAEAQRAGMPFVDQRWLGGMLTNFKTIKTSIKRLKDMEAAIEDGSVEK 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
+SKKE L+F R+ KL + IGGIK+MN +PDAIF++DVGYHKGA++EA KL IP+IGVVD
Sbjct: 128 MSKKEGLMFSREVEKLQKSIGGIKDMNGLPDAIFVVDVGYHKGAITEAAKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKA 236
TNHSP+G+ YVIPGNDDS+K+I LY +G+ DA L E R+ + ++E K
Sbjct: 188 TNHSPEGLAYVIPGNDDSSKAIQLYARGVADAIL------EGRANAMHDVLEAAKG 237
|
Source: Oxalobacter formigenes OXCC13 Species: Oxalobacter formigenes Genus: Oxalobacter Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|409405990|ref|ZP_11254452.1| 30S ribosomal protein S2 [Herbaspirillum sp. GW103] gi|386434539|gb|EIJ47364.1| 30S ribosomal protein S2 [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 340 bits (872), Expect = 2e-90, Method: Composition-based stats.
Identities = 155/217 (71%), Positives = 192/217 (88%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY++A++Y+ QL ++GT+L
Sbjct: 21 MLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAVKYVRQLSANRGTIL 80
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQAR ++A EA RAG+P++DQRWLGG+LTNFKTIKTSI+RLK+M+ + +GS+ K
Sbjct: 81 FVGTKRQARDILAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAMEDGSVEK 140
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
LSKKEALLF R+Q KL + IGGIK+M IPDAIF+IDVGYHKGA++EA KL IP+IGVVD
Sbjct: 141 LSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVD 200
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TNHSP+G+ YVIPGNDDSAK+IALY +G+ DA L+ +
Sbjct: 201 TNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGR 237
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300311493|ref|YP_003775585.1| 30S ribosomal protein S2 [Herbaspirillum seropedicae SmR1] gi|124483406|emb|CAM32576.1| 30S ribosomal subunit protein S2 [Herbaspirillum seropedicae] gi|300074278|gb|ADJ63677.1| 30S ribosomal subunit protein S2 [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 338 bits (867), Expect = 7e-90, Method: Composition-based stats.
Identities = 155/217 (71%), Positives = 191/217 (88%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY++A +Y+ QL ++GT+L
Sbjct: 8 MLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAQKYVRQLSANRGTIL 67
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQAR ++A EA RAG+P++DQRWLGG+LTNFKTIKTSI+RLK+M+ + +GS+ K
Sbjct: 68 FVGTKRQAREILAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAVEDGSVEK 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
LSKKEALLF R+Q KL + IGGIK+M IPDAIF+IDVGYHKGA++EA KL IP+IGVVD
Sbjct: 128 LSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TNHSP+G+ YVIPGNDDSAK+IALY +G+ DA L+ +
Sbjct: 188 TNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGR 224
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 837 | ||||||
| UNIPROTKB|Q9KPV2 | 242 | rpsB "30S ribosomal protein S2 | 0.278 | 0.962 | 0.483 | 1.3e-59 | |
| TIGR_CMR|VC_2260 | 242 | VC_2260 "ribosomal protein S2" | 0.278 | 0.962 | 0.483 | 1.3e-59 | |
| TIGR_CMR|CPS_1553 | 242 | CPS_1553 "ribosomal protein S2 | 0.259 | 0.896 | 0.483 | 3.2e-58 | |
| TIGR_CMR|GSU_1921 | 251 | GSU_1921 "ribosomal protein S2 | 0.256 | 0.856 | 0.525 | 4e-58 | |
| TIGR_CMR|SO_1629 | 242 | SO_1629 "ribosomal protein S2" | 0.253 | 0.876 | 0.509 | 1.1e-57 | |
| UNIPROTKB|P0A7V0 | 241 | rpsB [Escherichia coli K-12 (t | 0.277 | 0.962 | 0.483 | 1.7e-57 | |
| TIGR_CMR|CHY_1787 | 232 | CHY_1787 "ribosomal protein S2 | 0.262 | 0.948 | 0.497 | 1.1e-55 | |
| TIGR_CMR|ECH_0514 | 288 | ECH_0514 "ribosomal protein S2 | 0.256 | 0.746 | 0.5 | 7.8e-55 | |
| TIGR_CMR|BA_3965 | 233 | BA_3965 "ribosomal protein S2" | 0.262 | 0.944 | 0.502 | 9.9e-55 | |
| TIGR_CMR|DET_0377 | 245 | DET_0377 "ribosomal protein S2 | 0.259 | 0.885 | 0.460 | 6.4e-53 |
| UNIPROTKB|Q9KPV2 rpsB "30S ribosomal protein S2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 116/240 (48%), Positives = 169/240 (70%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
ML AGVHFGHQTR+WNPKM +IFG RN++HIINLEKT+ M+ +A+ + ++G KG +L
Sbjct: 9 MLTAGVHFGHQTRYWNPKMKQFIFGARNRVHIINLEKTVPMFNEALAELAKVGEKKGKVL 68
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKR A + A+ + +++ RWLGG+LTN+KT++ SI+RLKE+++ T+G+ K
Sbjct: 69 FVGTKRAASESVKEAALASNQYYVNNRWLGGMLTNWKTVRQSIKRLKELEVQSTDGTFDK 128
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L+KKEAL+ R+ KL + +GGIK+M +PDA+F+ID + A+ EA L IP+ VVD
Sbjct: 129 LTKKEALMRTREMEKLEKSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAVVD 188
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 240
TN SPDG++Y+IPGNDD+ +++ LY A+ + E R+K +A + E K +EA
Sbjct: 189 TNSSPDGVDYIIPGNDDAIRAVQLYLNAA------AQAINEGRNKDVAAVAE-KDGFVEA 241
|
|
| TIGR_CMR|VC_2260 VC_2260 "ribosomal protein S2" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 116/240 (48%), Positives = 169/240 (70%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
ML AGVHFGHQTR+WNPKM +IFG RN++HIINLEKT+ M+ +A+ + ++G KG +L
Sbjct: 9 MLTAGVHFGHQTRYWNPKMKQFIFGARNRVHIINLEKTVPMFNEALAELAKVGEKKGKVL 68
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKR A + A+ + +++ RWLGG+LTN+KT++ SI+RLKE+++ T+G+ K
Sbjct: 69 FVGTKRAASESVKEAALASNQYYVNNRWLGGMLTNWKTVRQSIKRLKELEVQSTDGTFDK 128
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L+KKEAL+ R+ KL + +GGIK+M +PDA+F+ID + A+ EA L IP+ VVD
Sbjct: 129 LTKKEALMRTREMEKLEKSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAVVD 188
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 240
TN SPDG++Y+IPGNDD+ +++ LY A+ + E R+K +A + E K +EA
Sbjct: 189 TNSSPDGVDYIIPGNDDAIRAVQLYLNAA------AQAINEGRNKDVAAVAE-KDGFVEA 241
|
|
| TIGR_CMR|CPS_1553 CPS_1553 "ribosomal protein S2" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 105/217 (48%), Positives = 160/217 (73%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
ML+AGVHFGH+TR+WNPKM +IFG R+K+HIINLE+T+ M+ +A+ ++ + KG +L
Sbjct: 9 MLKAGVHFGHKTRYWNPKMKQFIFGARDKVHIINLEQTVPMFNEALAFVNNVSSKKGKVL 68
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKR A I + A+++ +++ RWLGG+LTN+KT++ SI+RLK+++ T+G+
Sbjct: 69 FVGTKRAASDAIKDAAIKSDQFYVNHRWLGGMLTNWKTVRQSIKRLKDLESQSTDGTFEA 128
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L+KKEAL+ R+ KL++ +GGIKNM +PD +FIID + A+ EA L IP+I VVD
Sbjct: 129 LTKKEALMRTREMEKLDKSLGGIKNMGGLPDVLFIIDADHEHIAIKEANNLGIPVISVVD 188
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TN +PDG++YV+PGNDD+ +++ LY + ++ L +
Sbjct: 189 TNSNPDGVDYVVPGNDDAIRAVTLYCDAVANSVLSGR 225
|
|
| TIGR_CMR|GSU_1921 GSU_1921 "ribosomal protein S2" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 113/215 (52%), Positives = 155/215 (72%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAGVHFGHQT+ WNPKM YIFG RN I+II+L+KT+ +++ A ++ + + T+L
Sbjct: 9 LLEAGVHFGHQTKRWNPKMKPYIFGARNGIYIIDLQKTVRLFKNAYNFVRENAQAGETML 68
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK+QA+ I EAVR GM F++QRWLGG+LTNF T+K SI RLK +D +GSI
Sbjct: 69 FVGTKKQAQDAIGEEAVRCGMYFVNQRWLGGMLTNFVTVKQSIDRLKRLDAMFADGSIEA 128
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
+KKEAL +++ KL +++GGIK M +P A+F+ID A+SEA KL IP++ VVD
Sbjct: 129 YTKKEALQLEKEREKLEKILGGIKGMGKLPGALFVIDPKNETIAISEAKKLGIPVVAVVD 188
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD 215
TN PD I+YVIPGNDD+ ++I L T + DA ++
Sbjct: 189 TNCDPDPIDYVIPGNDDAIRAIRLLTSKMADAVIE 223
|
|
| TIGR_CMR|SO_1629 SO_1629 "ribosomal protein S2" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 108/212 (50%), Positives = 151/212 (71%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
ML+AGVHFGHQTR+WNPKM +IFG RN +HIINLE T+ M+ +A+ +I + KG +L
Sbjct: 9 MLQAGVHFGHQTRYWNPKMKPFIFGARNGVHIINLEHTVPMFNEALAFISNVASKKGKVL 68
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKR A I A+ ++D RWLGG+LTN+KT++ SI+RLKE++ +G+ K
Sbjct: 69 FVGTKRAAGEAIKEAAISCDQYYVDHRWLGGMLTNWKTVRQSIKRLKELESQSVDGTFDK 128
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L+KKEAL+ R+ KL + +GGIKNM +PD +F+I + A+ EA L IP++ VVD
Sbjct: 129 LTKKEALMRTRELEKLEKSLGGIKNMGGLPDVLFVIGADHEHIAIKEANNLGIPVVAVVD 188
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDA 212
TN +PDG+NY++PGNDD+ ++I LYT + A
Sbjct: 189 TNSAPDGVNYIVPGNDDAMRAIRLYTTSVAAA 220
|
|
| UNIPROTKB|P0A7V0 rpsB [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 116/240 (48%), Positives = 168/240 (70%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
ML+AGVHFGHQTR+WNPKM +IFG RNK+HIINLEKT+ M+ +A+ + ++ KG +L
Sbjct: 9 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 68
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKR A + + A+ F++ RWLGG+LTN+KT++ SI+RLK+++ +G+ K
Sbjct: 69 FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 128
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L+KKEAL+ R+ KL +GGIK+M +PDA+F+ID + A+ EA L IP+ +VD
Sbjct: 129 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 188
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 240
TN PDG+++VIPGNDD+ +++ LY G V A TV E RS+ LA + +++ +EA
Sbjct: 189 TNSDPDGVDFVIPGNDDAIRAVTLYL-GAV-----AATVREGRSQDLAS--QAEESFVEA 240
|
|
| TIGR_CMR|CHY_1787 CHY_1787 "ribosomal protein S2" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 110/221 (49%), Positives = 155/221 (70%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAGVHFGHQTR WNPKM+ YIF RN I+II+L+KT E+A ++ +L GT+L
Sbjct: 9 LLEAGVHFGHQTRRWNPKMAEYIFTDRNGIYIIDLQKTAKKLEEAYSFVRELSAQGGTIL 68
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK+QA+ I EA R GM +++QRWLGG LTNFKTI+ ++RL E++ G++
Sbjct: 69 FVGTKKQAQDAIKEEAERCGMFYVNQRWLGGTLTNFKTIRKRVERLIEIEKMEQEGALSV 128
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L KKE +++ KL+R + GIK M +PDA+F++D K AV+EA KL+IP++ +VD
Sbjct: 129 LPKKEVAKILKEKEKLSRFLSGIKEMKKLPDALFVVDPRKEKIAVAEARKLDIPVVAIVD 188
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGE 221
TN PD ++YVIPGNDD+ +++ L T I DA ++ + GE
Sbjct: 189 TNCDPDEVDYVIPGNDDAIRAVKLITSKIADAVIEGRQ-GE 228
|
|
| TIGR_CMR|ECH_0514 ECH_0514 "ribosomal protein S2" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 108/216 (50%), Positives = 152/216 (70%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
++E+GVHFGH+ WNPKM+ YI+G N IHIINL+ T+ + + A++ +Y + +G +L
Sbjct: 12 LVESGVHFGHKASRWNPKMAPYIYGVHNDIHIINLQNTVVLLKNALKALYDIVLKRGRVL 71
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
F+GTK QA +IA+EAVR G +I+ RWLGG+LTN++TI SI++LKE + I N +
Sbjct: 72 FIGTKVQASAIIADEAVRCGQYYINNRWLGGMLTNWETISLSIKKLKEYEKLIENVD-NQ 130
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
+KKE LLF +K+ KL+R IGGI NM +P A+F+ID A+ EA KLNIP+I V+D
Sbjct: 131 FTKKELLLFEKKRAKLDRSIGGICNMGGLPHALFVIDTNKEHIAIKEANKLNIPVIAVLD 190
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDA 216
TN P GI+Y IPGNDD+ +SI + K + D L+A
Sbjct: 191 TNSDPAGIDYPIPGNDDAVRSIDFFCKIVSDTILEA 226
|
|
| TIGR_CMR|BA_3965 BA_3965 "ribosomal protein S2" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 111/221 (50%), Positives = 156/221 (70%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAGVHFGHQTR WNPKM YIF RN I+II+L+KT+ E+A + + + G +L
Sbjct: 9 LLEAGVHFGHQTRRWNPKMKRYIFTERNGIYIIDLQKTVKKVEEAFKVMRDIAAEGGDIL 68
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK+QA+ I EA RAGM F++QRWLGG LTNF+TI+ I+RLK+++ +G+
Sbjct: 69 FVGTKKQAQEAIKEEATRAGMYFVNQRWLGGTLTNFQTIQKRIKRLKDIERMQEDGTFEV 128
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L KKE + ++ +L + +GGIK+M +P A+F++D + AV+EA KL+IPIIG+VD
Sbjct: 129 LPKKEVVQLKKELERLEKFLGGIKDMKGLPSALFVVDPRKERIAVAEARKLHIPIIGIVD 188
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGE 221
TN PD I++VIP NDD+ +++ L T + DA L+AK GE
Sbjct: 189 TNCDPDEIDHVIPANDDAIRAVKLLTSKMADAILEAKQ-GE 228
|
|
| TIGR_CMR|DET_0377 DET_0377 "ribosomal protein S2" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 6.4e-53, Sum P(2) = 6.4e-53
Identities = 100/217 (46%), Positives = 145/217 (66%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAG HFGHQT W+P+M YIF RN IHII+LEKT+ M +KA YI Q+ G +L
Sbjct: 9 LLEAGAHFGHQTSRWHPRMKKYIFTKRNGIHIIDLEKTVVMLDKACNYINQVVSEGGKVL 68
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK+QA+ ++A EA R GM FI+QRW GG+LTNF +I++ I L ++ G +
Sbjct: 69 FVGTKKQAQEILAEEAKRCGMYFINQRWTGGILTNFHSIQSRIDYLVRLEDQQARGDFNR 128
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L KKEA + +LNR +GG K M +PD IF++D K A++EA ++ +P++ +VD
Sbjct: 129 LPKKEAQKLAEEIARLNRTMGGFKEMTRLPDVIFVVDPTKEKIAMAEAKRMGVPLVAMVD 188
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TN +PD ++Y IP NDD+ ++I L + D+ ++A+
Sbjct: 189 TNCNPDEVDYPIPSNDDAMRAIKLICSKMADSVIEAQ 225
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B1XTU3 | RS2_POLNS | No assigned EC number | 0.6284 | 0.2604 | 0.8755 | yes | N/A |
| A1V569 | RS2_BURMS | No assigned EC number | 0.6635 | 0.2592 | 0.8821 | yes | N/A |
| Q63T12 | RS2_BURPS | No assigned EC number | 0.6635 | 0.2592 | 0.8821 | yes | N/A |
| B4ECN1 | RS2_BURCJ | No assigned EC number | 0.6543 | 0.2592 | 0.8821 | yes | N/A |
| A4G4S1 | RS2_HERAR | No assigned EC number | 0.6972 | 0.2604 | 0.8790 | yes | N/A |
| Q1H139 | RS2_METFK | No assigned EC number | 0.6451 | 0.2592 | 0.8714 | yes | N/A |
| Q12A31 | RS2_POLSJ | No assigned EC number | 0.6513 | 0.2592 | 0.868 | yes | N/A |
| Q470D7 | RS2_CUPPJ | No assigned EC number | 0.6635 | 0.2592 | 0.8785 | yes | N/A |
| Q7WA60 | RS2_BORPA | No assigned EC number | 0.6405 | 0.2592 | 0.8714 | yes | N/A |
| B1XXJ5 | RS2_LEPCP | No assigned EC number | 0.6497 | 0.2580 | 0.8709 | yes | N/A |
| A2SB72 | RS2_BURM9 | No assigned EC number | 0.6635 | 0.2592 | 0.8821 | yes | N/A |
| Q0KA16 | RS2_CUPNH | No assigned EC number | 0.6589 | 0.2592 | 0.875 | yes | N/A |
| B9MGL7 | RS2_ACIET | No assigned EC number | 0.6635 | 0.2580 | 0.864 | yes | N/A |
| Q39F43 | RS2_BURS3 | No assigned EC number | 0.6543 | 0.2592 | 0.8821 | yes | N/A |
| Q0AEH4 | RS2_NITEC | No assigned EC number | 0.6129 | 0.2592 | 0.8645 | yes | N/A |
| A4JF75 | RS2_BURVG | No assigned EC number | 0.6589 | 0.2592 | 0.8821 | yes | N/A |
| A3NAU8 | RS2_BURP6 | No assigned EC number | 0.6635 | 0.2592 | 0.8821 | yes | N/A |
| B1YS74 | RS2_BURA4 | No assigned EC number | 0.6589 | 0.2592 | 0.8821 | yes | N/A |
| A1TN69 | RS2_ACIAC | No assigned EC number | 0.6559 | 0.2592 | 0.868 | yes | N/A |
| A0K8E3 | RS2_BURCH | No assigned EC number | 0.6543 | 0.2592 | 0.8821 | yes | N/A |
| Q1BHI2 | RS2_BURCA | No assigned EC number | 0.6543 | 0.2592 | 0.8821 | yes | N/A |
| Q8XZJ1 | RS2_RALSO | No assigned EC number | 0.6728 | 0.2592 | 0.8785 | yes | N/A |
| C5CKS0 | RS2_VARPS | No assigned EC number | 0.6497 | 0.2580 | 0.864 | yes | N/A |
| Q13XB6 | RS2_BURXL | No assigned EC number | 0.6635 | 0.2592 | 0.868 | yes | N/A |
| B2UB06 | RS2_RALPJ | No assigned EC number | 0.6820 | 0.2592 | 0.8785 | yes | N/A |
| A4SYV1 | RS2_POLSQ | No assigned EC number | 0.6284 | 0.2604 | 0.8755 | yes | N/A |
| A6SZQ1 | RS2_JANMA | No assigned EC number | 0.7018 | 0.2604 | 0.8790 | yes | N/A |
| B3R2B7 | RS2_CUPTR | No assigned EC number | 0.6635 | 0.2592 | 0.8785 | yes | N/A |
| Q7WJ94 | RS2_BORBR | No assigned EC number | 0.6405 | 0.2592 | 0.8714 | yes | N/A |
| A9BMN2 | RS2_DELAS | No assigned EC number | 0.6543 | 0.2580 | 0.864 | yes | N/A |
| A3NWN1 | RS2_BURP0 | No assigned EC number | 0.6635 | 0.2592 | 0.8821 | yes | N/A |
| Q2L162 | RS2_BORA1 | No assigned EC number | 0.6589 | 0.2592 | 0.8714 | yes | N/A |
| A1W918 | RS2_ACISJ | No assigned EC number | 0.6589 | 0.2580 | 0.864 | yes | N/A |
| B2T5J4 | RS2_BURPP | No assigned EC number | 0.6682 | 0.2592 | 0.868 | yes | N/A |
| B2JIC6 | RS2_BURP8 | No assigned EC number | 0.6589 | 0.2592 | 0.868 | yes | N/A |
| Q1LNF8 | RS2_RALME | No assigned EC number | 0.6635 | 0.2592 | 0.8785 | yes | N/A |
| Q2YBA7 | RS2_NITMU | No assigned EC number | 0.6543 | 0.2592 | 0.875 | yes | N/A |
| Q0BE15 | RS2_BURCM | No assigned EC number | 0.6589 | 0.2592 | 0.8821 | yes | N/A |
| A1WHU2 | RS2_VEREI | No assigned EC number | 0.6559 | 0.2592 | 0.868 | yes | N/A |
| A1K6S1 | RS2_AZOSB | No assigned EC number | 0.6422 | 0.2604 | 0.8685 | yes | N/A |
| A1VN40 | RS2_POLNA | No assigned EC number | 0.6376 | 0.2592 | 0.868 | yes | N/A |
| Q62JC4 | RS2_BURMA | No assigned EC number | 0.6635 | 0.2592 | 0.8821 | yes | N/A |
| Q21WY9 | RS2_RHOFD | No assigned EC number | 0.6330 | 0.2592 | 0.868 | yes | N/A |
| Q2SWZ8 | RS2_BURTA | No assigned EC number | 0.6543 | 0.2592 | 0.8821 | yes | N/A |
| Q7VYD0 | RS2_BORPE | No assigned EC number | 0.6405 | 0.2592 | 0.8714 | yes | N/A |
| A3MKU3 | RS2_BURM7 | No assigned EC number | 0.6635 | 0.2592 | 0.8821 | yes | N/A |
| B1JUF0 | RS2_BURCC | No assigned EC number | 0.6543 | 0.2592 | 0.8821 | yes | N/A |
| Q47F92 | RS2_DECAR | No assigned EC number | 0.6559 | 0.2604 | 0.8790 | yes | N/A |
| Q3JR28 | RS2_BURP1 | No assigned EC number | 0.6635 | 0.2592 | 0.8821 | yes | N/A |
| Q5NZH5 | RS2_AROAE | No assigned EC number | 0.6422 | 0.2604 | 0.8685 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.4 | 0.691 |
| 4th Layer | 2.7.4.22 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.7.2.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 837 | |||
| PRK05299 | 258 | PRK05299, rpsB, 30S ribosomal protein S2; Provisio | 1e-120 | |
| cd04254 | 231 | cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t | 1e-109 | |
| PRK00358 | 231 | PRK00358, pyrH, uridylate kinase; Provisional | 1e-103 | |
| COG0052 | 252 | COG0052, RpsB, Ribosomal protein S2 [Translation, | 6e-97 | |
| TIGR02075 | 232 | TIGR02075, pyrH_bact, uridylate kinase | 5e-94 | |
| TIGR01011 | 225 | TIGR01011, rpsB_bact, ribosomal protein S2, bacter | 2e-90 | |
| cd04239 | 229 | cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase | 7e-90 | |
| COG0528 | 238 | COG0528, PyrH, Uridylate kinase [Nucleotide transp | 9e-90 | |
| pfam00318 | 205 | pfam00318, Ribosomal_S2, Ribosomal protein S2 | 2e-84 | |
| PRK12311 | 326 | PRK12311, rpsB, 30S ribosomal protein S2/unknown d | 6e-76 | |
| PRK09377 | 290 | PRK09377, tsf, elongation factor Ts; Provisional | 7e-76 | |
| cd01425 | 193 | cd01425, RPS2, Ribosomal protein S2 (RPS2), involv | 4e-71 | |
| PRK00083 | 185 | PRK00083, frr, ribosome recycling factor; Reviewed | 5e-70 | |
| CHL00067 | 230 | CHL00067, rps2, ribosomal protein S2 | 2e-67 | |
| COG0264 | 296 | COG0264, Tsf, Translation elongation factor Ts [Tr | 2e-64 | |
| COG0233 | 187 | COG0233, Frr, Ribosome recycling factor [Translati | 5e-63 | |
| PRK14558 | 231 | PRK14558, pyrH, uridylate kinase; Provisional | 3e-60 | |
| pfam01765 | 165 | pfam01765, RRF, Ribosome recycling factor | 1e-58 | |
| PRK14556 | 249 | PRK14556, pyrH, uridylate kinase; Provisional | 1e-54 | |
| cd00520 | 179 | cd00520, RRF, Ribosome recycling factor (RRF) | 7e-53 | |
| TIGR00496 | 176 | TIGR00496, frr, ribosome recycling factor | 3e-48 | |
| PRK14557 | 247 | PRK14557, pyrH, uridylate kinase; Provisional | 1e-45 | |
| TIGR00116 | 291 | TIGR00116, tsf, translation elongation factor Ts | 4e-42 | |
| PRK12332 | 198 | PRK12332, tsf, elongation factor Ts; Reviewed | 2e-31 | |
| CHL00098 | 200 | CHL00098, tsf, elongation factor Ts | 4e-27 | |
| cd02115 | 248 | cd02115, AAK, Amino Acid Kinases (AAK) superfamily | 3e-21 | |
| pfam00696 | 230 | pfam00696, AA_kinase, Amino acid kinase family | 1e-20 | |
| cd04253 | 221 | cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP k | 3e-16 | |
| TIGR02076 | 221 | TIGR02076, pyrH_arch, uridylate kinase, putative | 1e-14 | |
| pfam00889 | 134 | pfam00889, EF_TS, Elongation factor TS | 1e-13 | |
| pfam00889 | 134 | pfam00889, EF_TS, Elongation factor TS | 2e-11 | |
| cd04246 | 239 | cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino | 2e-11 | |
| cd04261 | 239 | cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino | 4e-10 | |
| PRK12332 | 198 | PRK12332, tsf, elongation factor Ts; Reviewed | 1e-09 | |
| TIGR01012 | 196 | TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosol | 5e-09 | |
| TIGR00657 | 441 | TIGR00657, asp_kinases, aspartate kinase | 5e-08 | |
| PRK04020 | 204 | PRK04020, rps2P, 30S ribosomal protein S2; Provisi | 6e-08 | |
| TIGR00656 | 401 | TIGR00656, asp_kin_monofn, aspartate kinase, monof | 1e-07 | |
| COG0527 | 447 | COG0527, LysC, Aspartokinases [Amino acid transpor | 2e-07 | |
| cd04234 | 227 | cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa | 7e-07 | |
| cd04260 | 244 | cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A | 1e-06 | |
| PRK08210 | 403 | PRK08210, PRK08210, aspartate kinase I; Reviewed | 2e-06 | |
| PRK06635 | 404 | PRK06635, PRK06635, aspartate kinase; Reviewed | 9e-06 | |
| cd04258 | 292 | cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami | 1e-05 | |
| cd04243 | 293 | cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino | 1e-04 | |
| PRK07431 | 587 | PRK07431, PRK07431, aspartate kinase; Provisional | 3e-04 | |
| PRK09084 | 448 | PRK09084, PRK09084, aspartate kinase III; Validate | 7e-04 | |
| COG1608 | 252 | COG1608, COG1608, Predicted archaeal kinase [Gener | 0.001 | |
| cd04255 | 262 | cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD i | 0.001 | |
| cd04244 | 298 | cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino | 0.003 | |
| PRK08841 | 392 | PRK08841, PRK08841, aspartate kinase; Validated | 0.004 |
| >gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional | Back alignment and domain information |
|---|
Score = 363 bits (935), Expect = e-120
Identities = 119/217 (54%), Positives = 161/217 (74%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAGVHFGHQTR WNPKM YIFG RN IHII+L+KT+ M ++A ++ + + G +L
Sbjct: 9 LLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVAANGGKIL 68
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK+QA+ IA EA R GMP+++ RWLGG+LTNFKTI+ SI+RLKE++ +G+ K
Sbjct: 69 FVGTKKQAQEAIAEEAERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEK 128
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L+KKEAL+ R+ KL + +GGIK+M +PDA+F++D AV EA KL IP++ +VD
Sbjct: 129 LTKKEALMLTRELEKLEKSLGGIKDMGGLPDALFVVDPNKEHIAVKEARKLGIPVVAIVD 188
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TN PDG++Y IPGNDD+ +SI LYT I DA L+ +
Sbjct: 189 TNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGR 225
|
Length = 258 |
| >gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Score = 334 bits (858), Expect = e-109
Identities = 122/223 (54%), Positives = 163/223 (73%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEAL + + I+ ++ I EI E+V G+E+AIV+GGGNI RG S +DR+TAD
Sbjct: 9 GEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDRATAD 68
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
YMGMLAT+IN+LAL D L G+ + VMSAI ++ E YI AI++LE+G+VVIFAGG
Sbjct: 69 YMGMLATVINALALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGG 128
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 604
GNPFFTTDT AALRA EI A++ILKATKVDG+Y++DP K +A Y +T+DEV+SK L
Sbjct: 129 TGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSKGL 188
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647
++MD+TAF+ CRD LPI VF+I + G L + ++G+ GTL+
Sbjct: 189 KVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231
|
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231 |
| >gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 317 bits (815), Expect = e-103
Identities = 118/222 (53%), Positives = 161/222 (72%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEAL + I+ ++ I EI E+V G+E+AIV+GGGNI RG +DR+TAD
Sbjct: 9 GEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMDRATAD 68
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
YMGMLAT++N+LAL D L ++G+ + V SAI + + E YI AI++LE+G+VVIFA G
Sbjct: 69 YMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAG 128
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 604
GNPFFTTDT AALRA EI A+++LKAT VDG+Y++DP K A Y ++T+DEV+ K L
Sbjct: 129 TGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL 188
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
++MD+TA S RD K+PI VF++ K G LKRV++G++ GTLV
Sbjct: 189 KVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLV 230
|
Length = 231 |
| >gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 6e-97
Identities = 115/247 (46%), Positives = 163/247 (65%), Gaps = 3/247 (1%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAGVHFGHQTR WNPKM +IFG RN IHII+L+KTL +A +++ ++ + G +L
Sbjct: 9 LLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANGGKIL 68
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK+QA+ + A R G +++ RWLGG+LTNFKTI+ SI+RLKE++ +G
Sbjct: 69 FVGTKKQAQEPVKEFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDG-FDG 127
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L+KKEAL+ R+ KL + +GGIK+M +PD +F+ID K AV EA KL IP++ +VD
Sbjct: 128 LTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVD 187
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 240
TN PDG++YVIPGNDD+ +SIAL + A L+ + G + A I E ++
Sbjct: 188 TNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGR--GGALDEEEAAIEEDEEVEEFE 245
Query: 241 NGKLSKA 247
+ +
Sbjct: 246 AKEEAAE 252
|
Length = 252 |
| >gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase | Back alignment and domain information |
|---|
Score = 294 bits (754), Expect = 5e-94
Identities = 128/222 (57%), Positives = 157/222 (70%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEAL + I+ + I +EI E+V GIE+ IVIGGGNI RG+S IDR +AD
Sbjct: 10 GEALAGESQFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAAELGIDRVSAD 69
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
YMGMLAT+IN LAL D L K G+ + V+SAIS+ + ESYI AIK+LE+GKVVIF+GG
Sbjct: 70 YMGMLATVINGLALRDALEKLGLKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGG 129
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 604
GNPFFTTDT AALRA EI A++ILK T VDG+Y +DP K A Y IT++E + K L
Sbjct: 130 TGNPFFTTDTAAALRAIEINADVILKGTNVDGVYTADPKKNKDAKKYDTITYNEALKKNL 189
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
++MD TAF+ RD LPI VF+I K GALK+VI GK GTLV
Sbjct: 190 KVMDLTAFALARDNNLPIVVFNIDKPGALKKVILGKGIGTLV 231
|
This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232 |
| >gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type | Back alignment and domain information |
|---|
Score = 284 bits (728), Expect = 2e-90
Identities = 114/217 (52%), Positives = 160/217 (73%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAGVHFGHQTR WNPKM +IFG RN IHII+L+KTL + ++A ++ + + G +L
Sbjct: 7 LLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAANGGKIL 66
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK+QA+ +I EA R GM +++QRWLGG+LTNFKTI+ SI++LK+++ +G+
Sbjct: 67 FVGTKKQAKEIIKEEAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDD 126
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L+KKEAL+ R++ KL + +GGIK+M +PD +F+ID K AV+EA KL IP++ +VD
Sbjct: 127 LTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVD 186
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TN PD ++Y IPGNDD+ +SI L T I DA L+ K
Sbjct: 187 TNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGK 223
|
This model describes the bacterial, ribosomal, and chloroplast forms of ribosomal protein S2. TIGR01012 describes the archaeal and cytosolic forms [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 225 |
| >gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Score = 282 bits (725), Expect = 7e-90
Identities = 113/223 (50%), Positives = 160/223 (71%), Gaps = 1/223 (0%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEAL G+ I+ ++K I EI E+V G+E+AIV+GGGNI RG + + R+TAD
Sbjct: 8 GEALA-GEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRATAD 66
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
Y+GMLAT++N+LAL D L K G+ + VMSAI ++ E YI AI++LE+G++VIF GG
Sbjct: 67 YIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGG 126
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 604
GNP FTTDT AALRA EI A+++LKAT VDG+Y++DP K A Y +I++DE++ K L
Sbjct: 127 TGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL 186
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647
++MD+TA + CR K+PI VF+ +K G L R ++G++ GTL+
Sbjct: 187 KVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229
|
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229 |
| >gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 282 bits (725), Expect = 9e-90
Identities = 114/223 (51%), Positives = 156/223 (69%), Gaps = 1/223 (0%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEAL + I+ ++ I +EI E+V G+E+A+V+GGGNI RG +DR TAD
Sbjct: 14 GEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTAD 73
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
YMGMLAT++N+LAL D L + G+ + V SAI++ + E Y AI++LE+G+VVIF GG
Sbjct: 74 YMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGG 133
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKAT-KVDGIYNSDPNKCLSAIIYKKITFDEVISKK 603
GNP FTTDT AALRA EI+A+++LKAT KVDG+Y++DP K A Y +T+DEV+
Sbjct: 134 TGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIG 193
Query: 604 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
L++MD TAFS RD +PI VF+I K G LKR ++G+ GT+V
Sbjct: 194 LKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIV 236
|
Length = 238 |
| >gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2 | Back alignment and domain information |
|---|
Score = 267 bits (686), Expect = 2e-84
Identities = 111/217 (51%), Positives = 142/217 (65%), Gaps = 12/217 (5%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAGVHFGHQTR WNPKM YI+G RN IHII+LEKTL KA +I ++ G +L
Sbjct: 1 LLEAGVHFGHQTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRKAANFIKEIAAKGGKIL 60
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK+QA+ + A R G +++ RWLGG LTN+KTIK SI+RL+E
Sbjct: 61 FVGTKKQAQEAVKKFAKRTGQFYVNGRWLGGTLTNWKTIKKSIKRLEE------------ 108
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
LSKKEAL R+ KL + +GGIKNM +PD + ++D A+ EA KL IP+I +VD
Sbjct: 109 LSKKEALKLKRELEKLEKYLGGIKNMKKLPDLVIVVDPNKEHIAIKEASKLGIPVIAIVD 168
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TN PD I+Y IPGNDDS +SIAL + A L+ +
Sbjct: 169 TNCDPDLIDYPIPGNDDSIRSIALILWLLARAILEGR 205
|
Length = 205 |
| >gnl|CDD|183428 PRK12311, rpsB, 30S ribosomal protein S2/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 6e-76
Identities = 105/215 (48%), Positives = 148/215 (68%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAGVHFGHQ+ WNPKM+ YIFG RN IHII+L +T+ + +A++ + G +L
Sbjct: 4 LLEAGVHFGHQSHRWNPKMAPYIFGTRNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVL 63
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKRQA+ +A+ A R+ F++ RWLGG LTN+KTI SIQRL+++D +++G
Sbjct: 64 FVGTKRQAQDAVADAAKRSAQYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEANG 123
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
+KKE L R++ KL+R +GGIK+M +PD +F+ID A+ EA +L IP+ +VD
Sbjct: 124 YTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVD 183
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD 215
TN PDGI Y +PGNDD+ ++IALY I A +D
Sbjct: 184 TNCDPDGITYPVPGNDDAGRAIALYCDLIARAAID 218
|
Length = 326 |
| >gnl|CDD|236491 PRK09377, tsf, elongation factor Ts; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 7e-76
Identities = 89/213 (41%), Positives = 130/213 (61%), Gaps = 4/213 (1%)
Query: 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAI 274
A V ELR +T A +M+CKKAL EA+G + KA E LR K K + R A +G++A
Sbjct: 5 TAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAA 64
Query: 275 YISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVD 334
+ G LVE+N ETDFVAKN +F + ++A+ P +++ L LK+ TV+
Sbjct: 65 KVDGNKGVLVEVNSETDFVAKNEDFQALANEVAEAALAAKPADVEALLALKLDG--GTVE 122
Query: 335 EKCKELISRIGENIKIRRFKLFKTNNNLI-SYLHDN-KIGVIVEYNGDNESAVKDVAMHI 392
E ELI++IGENI +RRF + + ++ SYLH +IGV+V G +E KD+AMHI
Sbjct: 123 EARTELIAKIGENISLRRFARLEKDGGVVGSYLHGGGRIGVLVALEGGDEELAKDIAMHI 182
Query: 393 AAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 425
AAM P LS + +P +++EKE +A +A++ G
Sbjct: 183 AAMNPEYLSREDVPAEVVEKEREIAKEQAKEEG 215
|
Length = 290 |
| >gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 4e-71
Identities = 97/214 (45%), Positives = 130/214 (60%), Gaps = 22/214 (10%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAGVH GH+TR WNPKM YI+G RN IHII+LEKTL A+ +I + G +L
Sbjct: 1 LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKIL 60
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK QA+ + A R G +++ RWLGG LTN+KTI+ SI+RLK+++
Sbjct: 61 FVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLE---------- 110
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
+ KL + +GGIK+M +PD + ++D A+ EA KL IP+I +VD
Sbjct: 111 ------------KEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVD 158
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFL 214
TN PD I+Y IP NDDS +SIAL + A L
Sbjct: 159 TNCDPDLIDYPIPANDDSIRSIALILWLLARAIL 192
|
It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane and subsequent signalling events, and has been linked to several diseases. Some evidence also suggests that the precursor of 67LR, 37LRP is also present in the nucleus in animals, where it appears associated with histones. Length = 193 |
| >gnl|CDD|178850 PRK00083, frr, ribosome recycling factor; Reviewed | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 5e-70
Identities = 88/183 (48%), Positives = 132/183 (72%)
Query: 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 713
I++I K+ +++M ++ LK L K+RTGRAN +LD I+V Y+ T L ++A+I++
Sbjct: 2 INEILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPE 61
Query: 714 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 773
+ T+ IQP++K M I+KAI ++LGLNP+ G +I + IPPLT+ERR+E+VK +K
Sbjct: 62 ARTLLIQPWDKSMLKAIEKAIRASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEA 121
Query: 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833
EE K++IR IRRD+N+ LKKL K+K +S D RA+ +IQKLTDK+I +I++LL KEKE
Sbjct: 122 EEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELLAAKEKE 181
Query: 834 ILT 836
I+
Sbjct: 182 IME 184
|
Length = 185 |
| >gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2 | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 2e-67
Identities = 95/216 (43%), Positives = 133/216 (61%), Gaps = 4/216 (1%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
MLEAGVHFGHQTR WNPKM+ YI+ RN IHIINL +T +A ++ L
Sbjct: 13 MLEAGVHFGHQTRKWNPKMAPYIYAERNGIHIINLVQTARFLSEACDLVFDAASKGKKFL 72
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK+QA ++A+ A+RA ++++RWLGG+LTN+ T KT +Q+L+++ + G +
Sbjct: 73 FVGTKKQAADLVASAAIRARCHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLFNR 132
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L KKEA + R+ +L + +GGIK M +PD + IID A+ E KL IP I ++D
Sbjct: 133 LPKKEAAILKRQLSRLEKYLGGIKYMTKLPDIVIIIDQQEEYTALRECRKLGIPTISILD 192
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDA 216
TN PD + IP NDD+ SI L I++ A
Sbjct: 193 TNCDPDLADIPIPANDDAIASIKL----ILNKLTTA 224
|
Length = 230 |
| >gnl|CDD|223342 COG0264, Tsf, Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 2e-64
Identities = 93/216 (43%), Positives = 129/216 (59%), Gaps = 7/216 (3%)
Query: 216 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIY 275
A V ELR KT A +M+CKKAL EANG + KA E LR K K + R A +G+IA
Sbjct: 6 AALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAK 65
Query: 276 ISE--KVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTV 333
+ K LVE+NCETDFVAKN EF + + KIAK E P ++++L TV
Sbjct: 66 VDGDGKKAVLVEVNCETDFVAKNAEFQELANKIAKAALEKKPADVEELKAAFE-PGGKTV 124
Query: 334 DEKCKELISRIGENIKIRRFKLFKTNNNLI-SYLHDN-KIGVIVEYNGDNES--AVKDVA 389
+E+ LI++IGENI +RRF + + + ++ SYLH N +IGV+V G KD+A
Sbjct: 125 EEEIAALIAKIGENISLRRFAVLEAGDGVVGSYLHGNGRIGVLVALKGGAADEELAKDIA 184
Query: 390 MHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 425
MHIAAM P LS + +P +++EKE + + + + G
Sbjct: 185 MHIAAMNPQYLSREDVPAEVVEKEREIFLAQLKAEG 220
|
Length = 296 |
| >gnl|CDD|223311 COG0233, Frr, Ribosome recycling factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 5e-63
Identities = 88/186 (47%), Positives = 136/186 (73%)
Query: 651 IMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANIT 710
+M+I++I K+ ++KM ++ LK L K+RTGRAN +LD I V+Y+ T L ++A+I+
Sbjct: 1 MMMINEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASIS 60
Query: 711 LFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIK 770
+ + T+ I+PF+K M I+KAI +NLGLNP GN+I V +PPLT+ERR+E+VK+ K
Sbjct: 61 VPEARTLVIKPFDKSMVKAIEKAILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAK 120
Query: 771 NITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 830
EE K+++R IRRD+N+ +KKL K+K +S D +A+ +IQKLTD++I +I++LL +K
Sbjct: 121 KYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELLKDK 180
Query: 831 EKEILT 836
EKEI+
Sbjct: 181 EKEIME 186
|
Length = 187 |
| >gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 3e-60
Identities = 96/226 (42%), Positives = 137/226 (60%), Gaps = 10/226 (4%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEAL + + +++EI +V G ++ IVIG GN+ RG+ +++ + + AD
Sbjct: 9 GEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGV--ELKELSPTRAD 66
Query: 485 YMGMLATIINSLALFDILNKSG----IISHVMSAISIEKFLESYIPLNAIKYLEEGKVVI 540
+GML T+IN+L L DI KSG I+S +++ S+E I L Y G +VI
Sbjct: 67 QIGMLGTVINALYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIEL----YFRAGYIVI 122
Query: 541 FAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI 600
FAGG NPFFTTDT AALRA E+KA+I++KATKVDGIY+ DP K A +TF E I
Sbjct: 123 FAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAI 182
Query: 601 SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
L++MD+ AFS C+ + I V + + G L + ++G+N GTLV
Sbjct: 183 KMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLV 228
|
Length = 231 |
| >gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor | Back alignment and domain information |
|---|
Score = 196 bits (502), Expect = 1e-58
Identities = 82/164 (50%), Positives = 119/164 (72%)
Query: 672 LKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIK 731
LK+ L K+RTGRAN +LD I+V Y+ T L ++A+I++ + T+ I P++K + I+
Sbjct: 2 LKKELSKIRTGRANPSLLDGIRVDYYGSPTPLNQLASISVPEARTLLITPWDKSLIKAIE 61
Query: 732 KAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENL 791
KAI ++LGLNP G +I + IPPLT+ERR+E+VK K + EE K++IR IRRD+N+ L
Sbjct: 62 KAILASDLGLNPQNDGQVIRIPIPPLTEERRKELVKQAKKLAEEAKVAIRNIRRDANDKL 121
Query: 792 KKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 835
KKL K+K +S D RA+ +IQKLTDK+I +I++LL KEKEI+
Sbjct: 122 KKLEKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEKEIM 165
|
The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis. Length = 165 |
| >gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (480), Expect = 1e-54
Identities = 103/223 (46%), Positives = 143/223 (64%), Gaps = 1/223 (0%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQN-IDRSTA 483
GE+L + IN + II++I + + G+ELA+V+GGGNI RG N I R+TA
Sbjct: 24 GESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATA 83
Query: 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 543
D MGM+AT+IN+LAL D+L G+ + V SA ++ L+ + L +G+V+IFAG
Sbjct: 84 DSMGMIATMINALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAG 143
Query: 544 GIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 603
G GNPF TTDTTA+LRA EI A+ +LKAT V+G+Y+ DPNK A + K+TF EV+SK+
Sbjct: 144 GTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKE 203
Query: 604 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
L +MD AF+ CRD +PI VF + + AL + GT V
Sbjct: 204 LNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWV 246
|
Length = 249 |
| >gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF) | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 7e-53
Identities = 88/179 (49%), Positives = 128/179 (71%)
Query: 657 IKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHT 716
I K K+KM +++ LKE L K+RTGRAN +LD+I V+Y+ T L ++A+I++ T
Sbjct: 1 ILKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRT 60
Query: 717 ISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEET 776
I I PF+K I+KAI ++LGLNP G +I V++PPLT+ERR+E+VK K I EE
Sbjct: 61 IVINPFDKSAIKAIEKAILNSDLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEA 120
Query: 777 KISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 835
K++IR IRRD+N+ +KKL K K +S D +A+ D+QKLTD++I +I++LL +KEKE+L
Sbjct: 121 KVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELLKSKEKELL 179
|
Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species. Length = 179 |
| >gnl|CDD|129587 TIGR00496, frr, ribosome recycling factor | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 3e-48
Identities = 82/175 (46%), Positives = 129/175 (73%)
Query: 662 KQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQP 721
K++M +I+ LK L K+RTGRAN +LD I V+Y+ T L ++A++T+ ++ T+ IQP
Sbjct: 1 KERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQP 60
Query: 722 FEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIR 781
F+K + I+KAI ++LGLNP G++I V+ PPLT+ERR+E+VK K I E+ K+++R
Sbjct: 61 FDKSNINAIEKAIQRSDLGLNPNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVR 120
Query: 782 KIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILT 836
+RRD+N+ +KKL K+K +S D E R Q +IQKLTD++I +I+++L +KEKE++
Sbjct: 121 NVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEILKDKEKELME 175
|
This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily [Protein synthesis, Translation factors]. Length = 176 |
| >gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 1e-45
Identities = 92/234 (39%), Positives = 141/234 (60%), Gaps = 2/234 (0%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
G AL + NS +++I +EI IV GIE++IVIGGGNI RG + IDR AD
Sbjct: 13 GGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEAD 72
Query: 485 YMGMLATIINSLALFDIL-NKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 543
+G L TIINSL L +L +K+ VM++I E YI L A+ +L+ G +VIF G
Sbjct: 73 NIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGG 132
Query: 544 GIGNPFFTTDTTAALRAAEIKAEIILKATK-VDGIYNSDPNKCLSAIIYKKITFDEVISK 602
G G PF TTD + RA E+ ++ IL A + VDG++ SDP SA +Y+K+ +++V+ +
Sbjct: 133 GNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ 192
Query: 603 KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISD 656
+++MD A RD LP VF+ + G ++R+ G++ GTL+ + +++ +
Sbjct: 193 NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDASLLVHE 246
|
Length = 247 |
| >gnl|CDD|232832 TIGR00116, tsf, translation elongation factor Ts | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 4e-42
Identities = 82/214 (38%), Positives = 125/214 (58%), Gaps = 5/214 (2%)
Query: 216 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIY 275
A+ V ELR +T A +M+CKKAL+EANG KA + LR K K ++R A +GVI +
Sbjct: 6 AQLVKELRERTGAGMMDCKKALVEANGDFEKAIKWLREKGIAKAAKKADRVAAEGVIVLK 65
Query: 276 ISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDE 335
+VE+N ETDFVAKN F +F+ K+ + N L++L +++N E
Sbjct: 66 SDNHKAVIVEVNSETDFVAKNEGFKEFANKLLDELKANPITTLEELQKQELENK--EKVE 123
Query: 336 KCKELISRIGENIKIRRFKLFKTNNNLI-SYLHDN-KIGVIVEYNGD-NESAVKDVAMHI 392
L ++IGENI +RR + + +N+I SYLH N +IGV+VE G +E K +AMH+
Sbjct: 124 YLASLAAKIGENIVLRRVAVLEGQSNVIFSYLHANARIGVLVELKGKADEELAKHLAMHV 183
Query: 393 AAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGE 426
AA KP + D + ++ ++KE + +A+ G+
Sbjct: 184 AANKPQFIDQDDVSQEWVKKERQIITDQAELSGK 217
|
Translational elongation factor Ts (EF-Ts) catalyzes the exchange of GTP for the GDP of the EF-Tu.GDP complex as part of the cycle of translation elongation. This protein is found in Bacteria, mitochondria, and chloroplasts [Protein synthesis, Translation factors]. Length = 291 |
| >gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-31
Identities = 70/195 (35%), Positives = 90/195 (46%), Gaps = 56/195 (28%)
Query: 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNAKDG 270
AK V ELR KT A +M+CKKAL EANG + KA E LR K KK + R A +G
Sbjct: 4 TAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKK----AGRVAAEG 59
Query: 271 VIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP------------- 315
++ YI ++G LVE+NCETDFVA+ EF + +K IA I P
Sbjct: 60 LVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVI 119
Query: 316 -----INLDQLNNLK----------------------------IKNNLLTVDEKCKELIS 342
I Q N IK+ TV++ KE I+
Sbjct: 120 EKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFIKDPSKTVEDLIKEAIA 179
Query: 343 RIGENIKIRRFKLFK 357
+IGENI +RRF F+
Sbjct: 180 KIGENIVVRRFARFE 194
|
Length = 198 |
| >gnl|CDD|214362 CHL00098, tsf, elongation factor Ts | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-27
Identities = 73/191 (38%), Positives = 91/191 (47%), Gaps = 49/191 (25%)
Query: 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAI 274
A+ V ELR KT A +M+CKKAL EANG KA E LR K S R +G+I
Sbjct: 1 SAELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQKGLASANKKSTRITTEGLIES 60
Query: 275 YI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLI----------TENTP------- 315
YI K+G LVEINCETDFVA+ EF K +K IA I E+ P
Sbjct: 61 YIHTGGKLGVLVEINCETDFVARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLE 120
Query: 316 ----INLDQLNN-----------------LK---------IKNNLLTVDEKCKELISRIG 345
D L N LK I++ +TV+E K+ I+++G
Sbjct: 121 KKIESEKDDLQNKPEEIKEKIVEGRIKKRLKELSLLDQPFIRDQSITVEELIKQNIAKLG 180
Query: 346 ENIKIRRFKLF 356
ENI+IRRF F
Sbjct: 181 ENIQIRRFARF 191
|
Length = 200 |
| >gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 3e-21
Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 30/235 (12%)
Query: 441 IKNIISEISEIVSCGIELAIVIGGGN-----ICR-GISNKIQNIDRST---ADYMGMLAT 491
++N+ + ++ S G + +V G G + G R T D + +
Sbjct: 15 LRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGE 74
Query: 492 IINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAI---------KYLEEGKVVIFA 542
+++L + L + GI + + + + I LE G + I +
Sbjct: 75 GMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILS 134
Query: 543 GGIG--------NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKI 594
G G +D+TAAL AA +KA+ ++ T VDG+Y +DP K A + ++
Sbjct: 135 GFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSEL 194
Query: 595 TFDEV---ISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
T++E ++ A +P+R+ + GAL + GTL+
Sbjct: 195 TYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI 248
|
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248 |
| >gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 1e-20
Identities = 41/217 (18%), Positives = 87/217 (40%), Gaps = 27/217 (12%)
Query: 437 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL 496
+ IK + EI+++++ GI++ +V GGG + G ++ +
Sbjct: 14 DKDEIKRLAEEIAKLLALGIKVVVVSGGGGFTDKLLAAYGIEAGFVRHTAGATGLVLEAQ 73
Query: 497 ALFDILNKSG---------IISHVMSAISIEKFLESYIPLNAI-KYLEEGKVVIFAGGIG 546
++ ++ ++S + + AI + LE G V + G G
Sbjct: 74 LAAELNRIVVSLGERLGARAVALLLSDGGLPAVRLDLVDTEAIKELLEAGVVPVITGFGG 133
Query: 547 N---------PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD 597
++DT AAL A + A+ ++ T VDG+Y +DP K A + ++++D
Sbjct: 134 ENDTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADPRKNPDAKLIPELSYD 193
Query: 598 EV--------ISKKLEIMDSTAFSFCRDQKLPIRVFS 626
E ++ +++ A R +P+ + +
Sbjct: 194 EAEELLAAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230
|
This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230 |
| >gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 32/218 (14%)
Query: 441 IKNIISEISEIVSCGIELAIVIGGGNICR---GISNKIQNIDRSTADYMGMLATIINSLA 497
N++ +IS+ G ++A+V+GGG + R ++ K+ + D +G++AT +N+
Sbjct: 23 YANVLRKISD----GHKVAVVVGGGRLAREYISVARKL-GASEAFLDEIGIMATRLNARL 77
Query: 498 LFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAA 557
L L + SY A++ + GK+V+ GG P +TD AA
Sbjct: 78 LIAALGDA-----------YPPVPTSYEE--ALEAMFTGKIVV-MGGT-EPGQSTDAVAA 122
Query: 558 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE----VISKKL-----EIMD 608
L A + A++++ AT VDG+Y+ DP K A + +++ DE V E D
Sbjct: 123 LLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFD 182
Query: 609 STAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
A + V L+R ++G+ GT++
Sbjct: 183 PLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII 220
|
The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 221 |
| >gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 441 IKNIISEISEIVSCGIELAIVIGGGNICR---GISNKIQNIDRSTADYMGMLATIINSLA 497
NI+ ++S+ ++ +V+GGG R G++ ++ + D +G+ AT +N++
Sbjct: 22 FANILRKLSD----EHKVGVVVGGGKTARRYIGVAREL-GASETFLDEIGIDATRLNAML 76
Query: 498 LFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAA 557
L L + A++ + GK+V+ GG +P TTD AA
Sbjct: 77 LIAALGDDAYPKVPEN------------FEEALEAMSLGKIVV-MGGT-HPGHTTDAVAA 122
Query: 558 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE----VISKKL-----EIMD 608
L A KA++++ AT VDG+Y+ DP K A + K+T +E V S + E++D
Sbjct: 123 LLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVD 182
Query: 609 STAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
A K+ V + L++V++G++ GT++
Sbjct: 183 PLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220
|
This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 221 |
| >gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 1e-13
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 267 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIA 307
A +G++A+YI G LVE+NCETDFVAKN +F + +K IA
Sbjct: 1 AAEGLVAVYIDGNKGVLVEVNCETDFVAKNEKFQELAKDIA 41
|
Length = 134 |
| >gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-11
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 364 SYLHDNKIGVIVEYN------GDNES---AVKDVAMHIAAMKPIALSSDQIPKKIIEKEY 414
Y+ NK GV+VE N NE KD+AMHIAAM P LS D +P +++EKE
Sbjct: 8 VYIDGNK-GVLVEVNCETDFVAKNEKFQELAKDIAMHIAAMNPQYLSRDDVPAEVLEKER 66
Query: 415 SLAVLKAQQLG 425
+ +A++ G
Sbjct: 67 EILKAQAKEEG 77
|
Length = 134 |
| >gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 22/129 (17%)
Query: 530 IKYLEEGKVVIFAG--GI-GNPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 580
++ LEEG VV+ AG G+ + TT DTTA AA +KA+ T VDG+Y +
Sbjct: 120 LEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTA 179
Query: 581 DPNKCLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 637
DP A I++DE++ S +++ + + +P+RV S
Sbjct: 180 DPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFS-------- 231
Query: 638 EGKNEGTLV 646
+N GTL+
Sbjct: 232 --ENPGTLI 238
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239 |
| >gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
Query: 530 IKYLEEGKVVIFAG--GI-GNPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 580
+ LEEG VVI AG GI + TT DT+A AA + A+ T VDG+Y +
Sbjct: 120 RELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTA 179
Query: 581 DPNKCLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 637
DP A +I++DE++ S +++ + + +P+RV S
Sbjct: 180 DPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFS-------- 231
Query: 638 EGKNEGTLV 646
+ GTL+
Sbjct: 232 --EEPGTLI 238
|
In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239 |
| >gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 358 TNNNLI-SYLHDN-KIGVIVEYN--------GDN-ESAVKDVAMHIAAMKPIALSSDQIP 406
L+ SY+H +IGV+VE N + + KD+AM IAA P +S + +P
Sbjct: 56 AAEGLVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVP 115
Query: 407 KKIIEKEYSLAVLKAQQLGE 426
++IEKE + +AQ L E
Sbjct: 116 AEVIEKE--KEIYRAQALNE 133
|
Length = 198 |
| >gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal) | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 5e-09
Identities = 43/205 (20%), Positives = 77/205 (37%), Gaps = 51/205 (24%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNK-IHIINLEKTLYMYEKAIRYIYQLGFSKGTL 59
L AGVH G Q + M +I+ R+ +++++L KT A +++ + +
Sbjct: 9 YLAAGVHIGTQNK--TFDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVR--IEPQDI 64
Query: 60 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 119
L V + + + A G I R+ G TN K
Sbjct: 65 LVVSARIYGQKPVLKFAKYTGARAIAGRFTPGTFTN--------PMQKS----------- 105
Query: 120 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 179
+R+ P+ + + D AV EA ++ IPI+ +
Sbjct: 106 ----------FRE-----------------PEVVVVTDPRADHQAVKEASEVGIPIVALC 138
Query: 180 DTNHSPDGINYVIPGNDDSAKSIAL 204
DT++ ++ VIP N+ +S+AL
Sbjct: 139 DTDNPLRYVDLVIPTNNKGRRSLAL 163
|
This model describes the ribosomal protein of the cytosol and of Archaea, homologous to S2 of bacteria. It is designated typically as Sa in eukaryotes and Sa or S2 in the archaea. TIGR01011 describes the related protein of organelles and bacteria [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 196 |
| >gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-08
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 531 KYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSD 581
LEEG + + AG G TT D TAAL AA +KA+ T VDGIY +D
Sbjct: 163 PLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTD 222
Query: 582 PNKCLSAIIYKKITFDE---VISKKLEIMDSTAFSFCRDQKLPIRVFS 626
P A +I+++E + S +++ K+PI V S
Sbjct: 223 PRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKS 270
|
Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441 |
| >gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 6e-08
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 150 PDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIAL 204
PD + + D AV EAI++ IP++ + DT++ ++ VIP N+ K++AL
Sbjct: 115 PDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALAL 169
|
Length = 204 |
| >gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 533 LEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 583
LEEG +V+ AG G + TT D TAAL AA +KA+ + T V G+Y +DP
Sbjct: 126 LEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPR 185
Query: 584 KCLSAIIYKKITFDE---VISKKLEIMDSTAFSFCRDQKLPIRVFS 626
+A KI+++E + + +++ +PI V S
Sbjct: 186 VVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRS 231
|
This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401 |
| >gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 30/161 (18%)
Query: 530 IKYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 580
++ LEEGKV + AG G + TT D +AA AA + A+ + T VDG+Y +
Sbjct: 168 LRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTA 227
Query: 581 DPNKCLSAIIYKKITFDEVI------SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALK 634
DP A + +I+++E + +K L A +P+R+ K
Sbjct: 228 DPRIVPDARLLPEISYEEALELAYLGAKVLHP---RAVEPAMRSGIPLRI---------K 275
Query: 635 RVIEGKNEGTLVYEIYIM---IISDIKKNTKQKMLNTIKIL 672
GTL+ ++ I + ++
Sbjct: 276 NTFNPDAPGTLITAETESDEPVVKGIALDDNVALITVSGPG 316
|
Length = 447 |
| >gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 7e-07
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 534 EEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNK 584
E GKV + G IG + TT D +AA AA + A+ + T VDGIY +DP
Sbjct: 111 EIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170
Query: 585 CLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFS 626
A + +I++DE + +++ A R +PIRV +
Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKN 215
|
AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227 |
| >gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 492 IINSLALFDILNKSGIISHVMSA-----ISIEKFLESYI----PLNAIKYLEEGKVVIFA 542
II+++ L L G+ + ++ ++ + + + I P + L+EG VV+ A
Sbjct: 78 IISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVA 137
Query: 543 GGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKK 593
G G + TT DTTAA A + AE + T VDGI +DP +A I
Sbjct: 138 GFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDV 197
Query: 594 ITFDEV 599
++++EV
Sbjct: 198 VSYNEV 203
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244 |
| >gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 18/126 (14%)
Query: 492 IINSLALFDILNKSGIISHVMSA-----ISIEKFLESYI----PLNAIKYLEEGKVVIFA 542
II+S+ ++LN++GI + ++ I+ + F + I P ++ LEEG VV+ A
Sbjct: 80 IISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVA 139
Query: 543 GGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKK 593
G G N TT DTTAA +KAE + T VDGI +DP A +
Sbjct: 140 GFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDV 199
Query: 594 ITFDEV 599
++++EV
Sbjct: 200 VSYNEV 205
|
Length = 403 |
| >gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 9e-06
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 38/136 (27%)
Query: 531 KYLEEGKVVIFAG--GI---GNPFFTT------DTTAALRAAEIKA---EIILKATKVDG 576
+ L+EG VV+ AG G+ G TT DTTA AA +KA EI T VDG
Sbjct: 123 EALDEGDVVVVAGFQGVDEDGE--ITTLGRGGSDTTAVALAAALKADECEIY---TDVDG 177
Query: 577 IYNSDPNKCLSAIIYKKITFDEVI------SKKLEIMDSTAFSFCRDQKLPIRVFSIIKS 630
+Y +DP A KI+++E++ +K L + + + +P+RV S
Sbjct: 178 VYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHP---RSVEYAKKYNVPLRVRSSFSD 234
Query: 631 GALKRVIEGKNEGTLV 646
N GTL+
Sbjct: 235 ----------NPGTLI 240
|
Length = 404 |
| >gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 530 IKYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 580
+K L G VV+ G IG TT D +AAL A + AE + T V GIY +
Sbjct: 172 LKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTT 231
Query: 581 DPNKCLSAIIYKKITFDE 598
DP C +A K+I+F E
Sbjct: 232 DPRICPAARAIKEISFAE 249
|
AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292 |
| >gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 534 EEGKVVIFAGGIG-NPFFTT--------DTTAALRAAEIKAEIILKATKVDGIYNSDPNK 584
E GKVV+ G I N T D +AAL AA + AE + T VDG+Y +DP K
Sbjct: 177 EHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRK 236
Query: 585 CLSAIIYKKITFDE 598
A + K++++DE
Sbjct: 237 VPDARLLKELSYDE 250
|
These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293 |
| >gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 22/114 (19%)
Query: 531 KYLEEGKVVIFAG--GIGNPFF---TT------DTTAALRAAEIKAEIILKATKVDGIYN 579
++L+ GKVV+ AG GI TT DT+A AA + A+ T V G+
Sbjct: 123 RHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLT 182
Query: 580 SDPNKCLSAIIYKKITFDEVISKKLE-------IMDSTAFSFCRDQKLPIRVFS 626
+DP A + +I+ DE+ LE ++ A R+ +P+ V S
Sbjct: 183 TDPRLVPEAQLMDEISCDEM----LELASLGASVLHPRAVEIARNYGVPLVVRS 232
|
Length = 587 |
| >gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 7e-04
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 530 IKYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 580
+ L VV+ G IG TT D +AAL A + A + T V GIY +
Sbjct: 168 LLPLLAEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTT 227
Query: 581 DPNKCLSAIIYKKITFDE 598
DP +A +I+F+E
Sbjct: 228 DPRIVPAAKRIDEISFEE 245
|
Length = 448 |
| >gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 26/168 (15%)
Query: 500 DILNKSGI--ISHVMSAISIEKFLESYIPLNAIK-YLEEGKV------VIFAGGIGNPFF 550
D L +G+ +S V + S Y L AIK LE+G V V+ G
Sbjct: 88 DALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEII 147
Query: 551 TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEV----------- 599
+ D A E+K + ++ T VDG+Y+ DP K A + +I
Sbjct: 148 SGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTG 207
Query: 600 -ISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
I+KKLE R K + +F+ K + R + G+N GT +
Sbjct: 208 GIAKKLE----ALLEIARYGK-EVYIFNGNKPENIYRALRGENVGTRI 250
|
Length = 252 |
| >gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 532 YLEEGKVVIFAG-----------GIGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYN 579
+L+ G+ + +G G P TD A L A I A ++ DG+Y
Sbjct: 131 FLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYT 190
Query: 580 SDPNKCLSAIIYKKITFDEVISKKLE--IMDSTAFSFCRDQKL--PIRVFSIIKSGALKR 635
+DP K A +I+ E++ K L+ +++ ++ + +++ + + G L R
Sbjct: 191 ADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTR 250
Query: 636 VIEGKNEGTLVY 647
+ G++ GT++
Sbjct: 251 ALRGEHVGTIIR 262
|
The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 262 |
| >gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 533 LEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 583
LE+GK+ + G IG + TT D +A + A + A+ I VDG+ +DP
Sbjct: 181 LEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPR 240
Query: 584 KCLSAIIYKKITFDEVISKKL---EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK 640
A ++++ E + +++ ++ +P+RV K +
Sbjct: 241 IVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRV---------KNTFNPE 291
Query: 641 NEGTLV 646
GTL+
Sbjct: 292 APGTLI 297
|
The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298 |
| >gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 22/126 (17%)
Query: 533 LEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 583
LE+ ++VI AG G N TT DTTA A + A+ T VDG+Y DP
Sbjct: 125 LEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPR 184
Query: 584 KCLSAIIYKKITF---DEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK 640
+A I F + + K +++ + +P+RV S + G
Sbjct: 185 VVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEVG--------- 235
Query: 641 NEGTLV 646
EGTL+
Sbjct: 236 -EGTLI 240
|
Length = 392 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 837 | |||
| COG0052 | 252 | RpsB Ribosomal protein S2 [Translation, ribosomal | 100.0 | |
| PRK12311 | 326 | rpsB 30S ribosomal protein S2/unknown domain fusio | 100.0 | |
| TIGR01011 | 225 | rpsB_bact ribosomal protein S2, bacterial type. TI | 100.0 | |
| PRK05299 | 258 | rpsB 30S ribosomal protein S2; Provisional | 100.0 | |
| CHL00067 | 230 | rps2 ribosomal protein S2 | 100.0 | |
| PF00318 | 211 | Ribosomal_S2: Ribosomal protein S2; InterPro: IPR0 | 100.0 | |
| COG0233 | 187 | Frr Ribosome recycling factor [Translation, riboso | 100.0 | |
| cd01425 | 193 | RPS2 Ribosomal protein S2 (RPS2), involved in form | 100.0 | |
| COG0264 | 296 | Tsf Translation elongation factor Ts [Translation, | 100.0 | |
| TIGR01012 | 196 | Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archa | 100.0 | |
| TIGR00116 | 290 | tsf translation elongation factor Ts. This protein | 100.0 | |
| PRK09377 | 290 | tsf elongation factor Ts; Provisional | 100.0 | |
| PRK00083 | 185 | frr ribosome recycling factor; Reviewed | 100.0 | |
| PRK04020 | 204 | rps2P 30S ribosomal protein S2; Provisional | 100.0 | |
| TIGR00496 | 176 | frr ribosome recycling factor. This model finds on | 100.0 | |
| PTZ00254 | 249 | 40S ribosomal protein SA; Provisional | 100.0 | |
| cd00520 | 179 | RRF Ribosome recycling factor (RRF). Ribosome recy | 100.0 | |
| KOG0832|consensus | 251 | 100.0 | ||
| PF01765 | 165 | RRF: Ribosome recycling factor; InterPro: IPR02358 | 100.0 | |
| PRK12332 | 198 | tsf elongation factor Ts; Reviewed | 100.0 | |
| CHL00098 | 200 | tsf elongation factor Ts | 100.0 | |
| KOG4759|consensus | 263 | 100.0 | ||
| COG0528 | 238 | PyrH Uridylate kinase [Nucleotide transport and me | 100.0 | |
| KOG1071|consensus | 340 | 100.0 | ||
| PRK14556 | 249 | pyrH uridylate kinase; Provisional | 100.0 | |
| PF00889 | 221 | EF_TS: Elongation factor TS; InterPro: IPR014039 T | 100.0 | |
| PRK14558 | 231 | pyrH uridylate kinase; Provisional | 100.0 | |
| PRK00358 | 231 | pyrH uridylate kinase; Provisional | 100.0 | |
| cd04239 | 229 | AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik | 100.0 | |
| PRK14557 | 247 | pyrH uridylate kinase; Provisional | 100.0 | |
| cd04254 | 231 | AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi | 100.0 | |
| TIGR02075 | 233 | pyrH_bact uridylate kinase. This protein, also cal | 100.0 | |
| COG0263 | 369 | ProB Glutamate 5-kinase [Amino acid transport and | 99.97 | |
| cd04253 | 221 | AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP | 99.96 | |
| TIGR02076 | 221 | pyrH_arch uridylate kinase, putative. This family | 99.96 | |
| PRK12314 | 266 | gamma-glutamyl kinase; Provisional | 99.96 | |
| PTZ00489 | 264 | glutamate 5-kinase; Provisional | 99.95 | |
| PRK13402 | 368 | gamma-glutamyl kinase; Provisional | 99.95 | |
| cd04256 | 284 | AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase | 99.95 | |
| KOG0830|consensus | 254 | 99.95 | ||
| cd04242 | 251 | AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K | 99.95 | |
| cd02115 | 248 | AAK Amino Acid Kinases (AAK) superfamily, catalyti | 99.95 | |
| PRK05429 | 372 | gamma-glutamyl kinase; Provisional | 99.95 | |
| TIGR01027 | 363 | proB glutamate 5-kinase. Bacterial ProB proteins h | 99.95 | |
| cd04241 | 252 | AAK_FomA-like AAK_FomA-like: This CD includes a fo | 99.94 | |
| cd04261 | 239 | AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina | 99.94 | |
| cd04255 | 262 | AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th | 99.94 | |
| cd04246 | 239 | AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina | 99.94 | |
| COG1608 | 252 | Predicted archaeal kinase [General function predic | 99.94 | |
| PRK08841 | 392 | aspartate kinase; Validated | 99.93 | |
| COG0527 | 447 | LysC Aspartokinases [Amino acid transport and meta | 99.93 | |
| cd04234 | 227 | AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK) | 99.93 | |
| cd04260 | 244 | AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase | 99.92 | |
| PRK06635 | 404 | aspartate kinase; Reviewed | 99.92 | |
| cd04235 | 308 | AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot | 99.92 | |
| TIGR00746 | 310 | arcC carbamate kinase. The seed alignment for this | 99.92 | |
| PRK14058 | 268 | acetylglutamate/acetylaminoadipate kinase; Provisi | 99.92 | |
| COG0548 | 265 | ArgB Acetylglutamate kinase [Amino acid transport | 99.92 | |
| KOG1154|consensus | 285 | 99.92 | ||
| TIGR00656 | 401 | asp_kin_monofn aspartate kinase, monofunctional cl | 99.91 | |
| TIGR01092 | 715 | P5CS delta l-pyrroline-5-carboxylate synthetase. T | 99.91 | |
| PRK07431 | 587 | aspartate kinase; Provisional | 99.91 | |
| PRK12353 | 314 | putative amino acid kinase; Reviewed | 99.9 | |
| PRK08210 | 403 | aspartate kinase I; Reviewed | 99.9 | |
| CHL00202 | 284 | argB acetylglutamate kinase; Provisional | 99.9 | |
| PLN02512 | 309 | acetylglutamate kinase | 99.9 | |
| PLN02418 | 718 | delta-1-pyrroline-5-carboxylate synthase | 99.9 | |
| PRK12454 | 313 | carbamate kinase-like carbamoyl phosphate syntheta | 99.9 | |
| cd04250 | 279 | AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase | 99.89 | |
| cd04244 | 298 | AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina | 99.89 | |
| PRK00942 | 283 | acetylglutamate kinase; Provisional | 99.89 | |
| cd04259 | 295 | AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super | 99.89 | |
| PRK12686 | 312 | carbamate kinase; Reviewed | 99.88 | |
| TIGR00657 | 441 | asp_kinases aspartate kinase. The Lys-sensitive en | 99.88 | |
| cd04251 | 257 | AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina | 99.88 | |
| cd04238 | 256 | AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate | 99.87 | |
| cd04249 | 252 | AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina | 99.87 | |
| cd04257 | 294 | AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa | 99.87 | |
| cd04243 | 293 | AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina | 99.87 | |
| PRK06291 | 465 | aspartate kinase; Provisional | 99.86 | |
| cd04240 | 203 | AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin | 99.86 | |
| PF00696 | 242 | AA_kinase: Amino acid kinase family Match to Gluta | 99.86 | |
| cd04245 | 288 | AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki | 99.86 | |
| PRK08373 | 341 | aspartate kinase; Validated | 99.86 | |
| PLN02551 | 521 | aspartokinase | 99.86 | |
| cd04258 | 292 | AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki | 99.85 | |
| PRK12352 | 316 | putative carbamate kinase; Reviewed | 99.85 | |
| cd04247 | 306 | AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa | 99.85 | |
| TIGR02078 | 327 | AspKin_pair Pyrococcus aspartate kinase subunit, p | 99.84 | |
| PRK09034 | 454 | aspartate kinase; Reviewed | 99.84 | |
| PRK12354 | 307 | carbamate kinase; Reviewed | 99.84 | |
| PRK09084 | 448 | aspartate kinase III; Validated | 99.84 | |
| TIGR00761 | 231 | argB acetylglutamate kinase. This model describes | 99.84 | |
| PRK09411 | 297 | carbamate kinase; Reviewed | 99.84 | |
| cd04237 | 280 | AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) | 99.82 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 99.81 | |
| PRK05925 | 440 | aspartate kinase; Provisional | 99.81 | |
| PRK05279 | 441 | N-acetylglutamate synthase; Validated | 99.81 | |
| cd04252 | 248 | AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam | 99.81 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 99.8 | |
| TIGR01890 | 429 | N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi | 99.79 | |
| cd04236 | 271 | AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA | 99.79 | |
| PRK09181 | 475 | aspartate kinase; Validated | 99.78 | |
| COG0549 | 312 | ArcC Carbamate kinase [Amino acid transport and me | 99.78 | |
| PRK08961 | 861 | bifunctional aspartate kinase/diaminopimelate deca | 99.77 | |
| cd04248 | 304 | AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S | 99.75 | |
| KOG0456|consensus | 559 | 99.68 | ||
| PRK04531 | 398 | acetylglutamate kinase; Provisional | 99.66 | |
| COG2054 | 212 | Uncharacterized archaeal kinase related to asparto | 99.63 | |
| PLN02825 | 515 | amino-acid N-acetyltransferase | 99.57 | |
| PF00889 | 221 | EF_TS: Elongation factor TS; InterPro: IPR014039 T | 99.38 | |
| COG0264 | 296 | Tsf Translation elongation factor Ts [Translation, | 99.36 | |
| TIGR00116 | 290 | tsf translation elongation factor Ts. This protein | 99.34 | |
| PRK09377 | 290 | tsf elongation factor Ts; Provisional | 99.29 | |
| CHL00098 | 200 | tsf elongation factor Ts | 99.17 | |
| PRK12332 | 198 | tsf elongation factor Ts; Reviewed | 99.07 | |
| KOG2436|consensus | 520 | 98.0 | ||
| PF00627 | 37 | UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma | 97.26 | |
| PRK05441 | 299 | murQ N-acetylmuramic acid-6-phosphate etherase; Re | 96.84 | |
| PRK12570 | 296 | N-acetylmuramic acid-6-phosphate etherase; Reviewe | 96.52 | |
| cd05007 | 257 | SIS_Etherase N-acetylmuramic acid 6-phosphate ethe | 96.01 | |
| TIGR00274 | 291 | N-acetylmuramic acid 6-phosphate etherase. This pr | 95.88 | |
| PRK06369 | 115 | nac nascent polypeptide-associated complex protein | 95.29 | |
| TIGR00264 | 116 | alpha-NAC-related protein. This hypothetical prote | 95.05 | |
| KOG1071|consensus | 340 | 94.88 | ||
| smart00165 | 37 | UBA Ubiquitin associated domain. Present in Rad23, | 94.8 | |
| cd00194 | 38 | UBA Ubiquitin Associated domain. The UBA domain is | 94.53 | |
| COG1308 | 122 | EGD2 Transcription factor homologous to NACalpha-B | 87.42 | |
| PF14555 | 43 | UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A | 87.35 | |
| COG2103 | 298 | Predicted sugar phosphate isomerase [General funct | 84.86 | |
| PF13580 | 138 | SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_ | 83.48 | |
| PRK00414 | 192 | gmhA phosphoheptose isomerase; Reviewed | 81.9 | |
| TIGR03127 | 179 | RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of | 81.27 |
| >COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-73 Score=571.82 Aligned_cols=218 Identities=51% Similarity=0.849 Sum_probs=215.5
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||+||+||||++++|||+|+||||+.|||+|||||.+|+.+|+.|++++..++.++|+|||||||++++++|+++|++||
T Consensus 9 lLeAGvHfGhqtr~wnpkm~~fIf~~RngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~r~g 88 (252)
T COG0052 9 LLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAERTG 88 (252)
T ss_pred HHHcCccccccccccCCcccccceeecCCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+|||||||+||++++++|++++.+..++ |+.|+|||.+.+.|+.+||+++|||||+|+++||++||+||..
T Consensus 89 ~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~-~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~ 167 (252)
T COG0052 89 AYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDG-FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRK 167 (252)
T ss_pred CceecCcccCccccCchhHHHHHHHHHHHHHHhhcc-cccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEEEEeCCcH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
|++||+||+++||||||+|||||||+.||||||||||+++|+.|++|+|++||++|+.-
T Consensus 168 e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~~ 226 (252)
T COG0052 168 EKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGG 226 (252)
T ss_pred hHHHHHHHHHcCCCEEEEecCCCCCccCceeecCCChHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999863
|
|
| >PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=557.07 Aligned_cols=218 Identities=48% Similarity=0.827 Sum_probs=215.9
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||++|+||||++++|||+|+|||||.|||+|||||.+|+.+|++||++|.+++.++|+||||||+++++++|+++|++||
T Consensus 4 Ll~agvH~Gh~~~~wnpkM~~yIyg~R~gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~~~g 83 (326)
T PRK12311 4 LLEAGVHFGHQSHRWNPKMAPYIFGTRNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAKRSA 83 (326)
T ss_pred HHhCCeecccCCCCCCCcccCceecccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+|||||||+|+++++++|+.++.+...+.|+.|+|||.+.+.|+.+||+++|+|+++|+++||+|||+||..
T Consensus 84 ~~yV~~RWlgG~LTN~~ti~~si~~l~~l~~~~~~~~~~~~~kke~~~~~r~~~kl~k~l~Gi~~m~~~Pd~viv~d~~~ 163 (326)
T PRK12311 84 QYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVIDTNK 163 (326)
T ss_pred CeeeCCeecCcccCCHHHHHHHHHHHHHHHHHhhcCccccCCHHHHHHHHHHHHHHHHhccchhhcccCCCEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
|++||+||+++||||||||||||||++|||||||||||++|++|++++|+++|++|+.
T Consensus 164 e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP~NDds~~si~li~~~la~ai~~g~~ 221 (326)
T PRK12311 164 EDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAIDGIS 221 (326)
T ss_pred chHHHHHHHHcCCCEEEEeeCCCCccccceeecCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999985
|
|
| >TIGR01011 rpsB_bact ribosomal protein S2, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=528.56 Aligned_cols=217 Identities=53% Similarity=0.897 Sum_probs=214.8
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
|+++|+||||++++|||+|+|||||+|+|+|||||++|+.+|++||++++.+++++|+||||||+++++++|+++|+++|
T Consensus 7 ll~ag~H~Gh~~~~wnp~m~~yIyg~r~g~~IIdL~~T~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~~a~~~~ 86 (225)
T TIGR01011 7 LLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKEEAERCG 86 (225)
T ss_pred HHHcCcccccccCcCCcccccceeeeeCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||.++++++++|++++.+.+++.|+.++|||.+.+.|+.+||+++|+|+++|+++||+|||+||.+
T Consensus 87 ~~yv~~rWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~f~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~vii~d~~~ 166 (225)
T TIGR01011 87 MFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLFVIDPVK 166 (225)
T ss_pred CcccCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhccCccccccCCCEEEEeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~ 217 (837)
|++|++||.++||||||+|||||||++|||||||||||.+|++|++++|++||++|+
T Consensus 167 ~~~ai~Ea~~l~IP~I~ivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~g~ 223 (225)
T TIGR01011 167 EKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGK 223 (225)
T ss_pred cHHHHHHHHHcCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999996
|
TIGR01012 describes the archaeal and cytosolic forms. |
| >PRK05299 rpsB 30S ribosomal protein S2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-65 Score=534.36 Aligned_cols=218 Identities=55% Similarity=0.950 Sum_probs=215.5
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||++|+||||++++|||+|+|||||.|+|+|||||.+|+.+|++||++|+.++.++|+||||||+++++++|+++|++||
T Consensus 9 Ll~agvH~Gh~~~~wnp~m~~yIyg~r~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V~~~A~~~~ 88 (258)
T PRK05299 9 LLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAIAEEAERCG 88 (258)
T ss_pred HHhcCcccccccCcCCCccccceecccCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||+++++++++|++++.+...+.|+.++|||.+.+.|+++||+++|+|+++|+++||+|||+||..
T Consensus 89 ~~yv~~rWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~iii~d~~~ 168 (258)
T PRK05299 89 MPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDALFVVDPNK 168 (258)
T ss_pred CeeeCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHhccCccccccCCCEEEEeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
|++|++||.++||||||||||||||++|||||||||||++|++|++++|++||++|+.
T Consensus 169 ~~~ai~Ea~kl~IPiIaivDTn~dp~~IdypIP~Ndds~~si~li~~~l~~ai~~g~~ 226 (258)
T PRK05299 169 EHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGRQ 226 (258)
T ss_pred cHHHHHHHHHhCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999985
|
|
| >CHL00067 rps2 ribosomal protein S2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=512.65 Aligned_cols=217 Identities=43% Similarity=0.726 Sum_probs=214.5
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||++|+||||++++|||+|+|||||.|+|+|||||++|+.+|++||++++.+++++|+||||||+++++++|+++|+++|
T Consensus 13 Ll~a~~h~Gh~~~~~np~m~~yIyg~r~g~~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~~v~~~a~~~~ 92 (230)
T CHL00067 13 MLEAGVHFGHQTRKWNPKMAPYIYAERNGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAADLVASAAIRAR 92 (230)
T ss_pred HHhcCeEeccCcCcCCCchhhhhhcccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||.++++++++|++++.....+.|..++|||.+.+.|++.||+++|+|+++|+++||+|||+||..
T Consensus 93 ~~yv~~rWigG~LTN~~~i~~~i~~~~~l~~~~~~~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~m~~~P~~iiv~d~~~ 172 (230)
T CHL00067 93 CHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLPDIVIIIDQQE 172 (230)
T ss_pred CcCccCcccCCcccCHHHHHHHHHHHHHHHHHhhccchhcccHhHHHHHHHHHHHHHHhhccccccccCCCEEEEeCCcc
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~ 217 (837)
|++|++||.++||||||||||||||++|||||||||||.+|++|++++|++||.+|+
T Consensus 173 ~~~ai~Ea~~l~IPvIaivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~G~ 229 (230)
T CHL00067 173 EYTALRECRKLGIPTISILDTNCDPDLADIPIPANDDAIASIKLILNKLTTAICEGR 229 (230)
T ss_pred cHHHHHHHHHcCCCEEEEEeCCCCccccceeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999996
|
|
| >PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=475.96 Aligned_cols=211 Identities=49% Similarity=0.796 Sum_probs=202.2
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
|+++|+|+||++++|||+|+|||||.|+|+|||||++|+.+|++|+++|.+++.++|+||||||+++++++|+++|+++|
T Consensus 1 Ll~a~~HlG~~~~~~n~~m~~yI~g~r~g~~IidL~kT~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~~ 80 (211)
T PF00318_consen 1 LLKAGVHLGHKKSRWNPKMKPYIYGKRNGIHIIDLEKTLEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRTG 80 (211)
T ss_dssp HHHHTTTSCBSSSSSSGGGGGGEEEEETTEEEETHHHHHHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHHT
T ss_pred CcccceecCCCcCCCCCCcccceecccCceEEEEHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++|+++||+||+||||.++++++.+|++++.... ++||+...+.++++|++++|+|+++|+++||+||++||.+
T Consensus 81 ~~yi~~rWi~G~LTN~~~i~~~i~~l~~l~~~~~------~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~ 154 (211)
T PF00318_consen 81 SFYINERWIGGTLTNWKTIKKSIKKLKKLEKLFK------LTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNK 154 (211)
T ss_dssp CEEEESS-STTTTTTTTHCHHHHHHHHHHHHHTT------SSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTT
T ss_pred CCccCceecCcccCcHHHHHHHHHHHHHHHHhhh------ccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccc
Confidence 9999999999999999999999999999876554 8999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~ 217 (837)
|++|++||.++||||||+|||||||+.+||||||||||..|++|++++|++||++|+
T Consensus 155 ~~~~i~Ea~~l~IP~i~i~Dtn~~~~~i~ypIp~N~~s~~si~~i~~~l~~ai~~g~ 211 (211)
T PF00318_consen 155 NKNAIREANKLNIPTIAIVDTNCNPSLIDYPIPANDDSIKSIYLILNLLAKAILEGK 211 (211)
T ss_dssp THHHHHHHHHTTS-EEEEESTTS-GTTSSEEEES-SSSHHHHHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHhcCceEEEeecCCCCccccceEeecCCccHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999986
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B .... |
| >COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-56 Score=431.06 Aligned_cols=184 Identities=47% Similarity=0.738 Sum_probs=181.8
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++.+++++|++++++|+++|+++||||+||++||+|.|+|||.++||+|||+||+|++|+|+|+|||++++++|++|
T Consensus 4 ~~~i~~~~e~kM~k~~e~l~~~l~~iRTGRanp~lld~i~VeyYG~~tPl~qvAsIsvpe~r~l~I~p~Dks~~~~Ieka 83 (187)
T COG0233 4 INEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFDKSMVKAIEKA 83 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHhcceeeeecCCCCcHHHHhhccCCCcceEEeecCccchHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|+.|||||||.+||+.|||++|+||+|||++|+|.+|+++|++|++||||||++++++||+.|++.||||+.++++++||
T Consensus 84 I~~snLglnP~~dG~~IRv~~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~iQ 163 (187)
T COG0233 84 ILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQ 163 (187)
T ss_pred HHHcCCCCCcCcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|+++||++++.||||||+|
T Consensus 164 KlTd~yi~~iD~~~~~KEkEim~v 187 (187)
T COG0233 164 KLTDEYIKKIDELLKDKEKEIMEV 187 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
|
|
| >cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=453.05 Aligned_cols=193 Identities=50% Similarity=0.818 Sum_probs=187.1
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
|+++|+|+||++++|||+|+|||||+|+|+|||||++|+.+|++|++++.+++.++|+||||||+++++++|+++|+++|
T Consensus 1 ll~ag~h~G~~~~~wnp~m~~yiyg~r~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~ 80 (193)
T cd01425 1 LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTG 80 (193)
T ss_pred CCccceEeCCCcCCCCccchhheecccCCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++|+++||+||+||||.++++++.++++++. .|++++|+|+++|.++||+||++||..
T Consensus 81 ~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~----------------------~~~~k~~~g~~~~~~~Pdlviv~~~~~ 138 (193)
T cd01425 81 SFYVNGRWLGGTLTNWKTIRKSIKRLKKLEK----------------------EKLEKNLGGIKDMFRLPDLVIVLDPRK 138 (193)
T ss_pred CeeecCeecCCcCCCHHHHHHHHHHHHHHHH----------------------HHHHHhcccccccccCCCEEEEeCCcc
Confidence 9999999999999999999999998877532 678999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD 215 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~ 215 (837)
|++|++||.++||||||+|||||||++|||||||||||.+|++|++++|++|+++
T Consensus 139 ~~~ai~Ea~~l~IP~I~i~Dtn~~~~~i~ypIP~Nd~s~~si~li~~~l~~ai~~ 193 (193)
T cd01425 139 EHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSIRSIALILWLLARAILE 193 (193)
T ss_pred chHHHHHHHHcCCCEEEEecCCCCCccceEEeecCCchHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999864
|
It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an |
| >COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-56 Score=457.18 Aligned_cols=221 Identities=43% Similarity=0.618 Sum_probs=205.3
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEe--CCEEEEEEEecCCch
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDF 292 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~--~~~g~iveln~etdf 292 (837)
...+||+||++||++|||||+||.|+|||+|+|++|||++|+++|+||++|+|+||+|.+|++ ++.|+|||+||||||
T Consensus 5 ta~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ETDF 84 (296)
T COG0264 5 TAALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCETDF 84 (296)
T ss_pred cHHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEeccccc
Confidence 456899999999999999999999999999999999999999999999999999999999996 569999999999999
Q ss_pred hccchHHHHHHHHHHHHHHhcCCCChhhhhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCC-eEEEEeeC-Ce
Q psy13351 293 VAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN-NLISYLHD-NK 370 (837)
Q Consensus 293 va~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~-~i~~Y~H~-~~ 370 (837)
||+|+.|++|+++|+.++++..|.+++++...++.+ +.||++.+.++++++||||++|||..++.+. .+++|+|+ ||
T Consensus 85 VAkN~~F~~l~~~ia~~~l~~~~~~ve~l~~~~~~~-~~tv~e~~~~~~AkIGENi~lRR~~~~~~~~~~v~~Y~H~~gr 163 (296)
T COG0264 85 VAKNAEFQELANKIAKAALEKKPADVEELKAAFEPG-GKTVEEEIAALIAKIGENISLRRFAVLEAGDGVVGSYLHGNGR 163 (296)
T ss_pred eeCChhHHHHHHHHHHHHHHhCcccHHHHHhhhccc-CccHHHHHHHHHHHhccceeEEEEEEeecCcccEEEEEeCCCc
Confidence 999999999999999999999999999999888864 6799999999999999999999999999877 59999999 79
Q ss_pred EEEEEEecC--CChhHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhccCCCccccccchh
Q psy13351 371 IGVIVEYNG--DNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIK 442 (837)
Q Consensus 371 ~~~~v~~~~--~~~~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~g~~~~i~~~~i~ 442 (837)
|||||.+++ ..+.+|+++||||||++|.||++++||++++++|++++..++ ...|+|..+.+++++
T Consensus 164 iGVlv~~~~~~~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~Er~i~~~~~------~~~gKP~~i~eKiVe 231 (296)
T COG0264 164 IGVLVALKGGAADEELAKDIAMHIAAMNPQYLSREDVPAEVVEKEREIFLAQL------KAEGKPENIVEKIVE 231 (296)
T ss_pred EEEEEEEeccchHHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHH------HhcCChHHHHHHHHh
Confidence 999999998 566899999999999999999999999999999999988875 234788776666544
|
|
| >TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=429.95 Aligned_cols=168 Identities=24% Similarity=0.357 Sum_probs=161.0
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+ .|||+|+|||||+| ||+|||||++|+.+|++|++++.+++ +|+||||||+++++.+|+++|++|
T Consensus 9 ll~agvH~Gh~--~~np~M~~yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~--~~~ILfVgtk~~~~~~V~~~A~~~ 84 (196)
T TIGR01012 9 YLAAGVHIGTQ--NKTKDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIE--PEDILVVSARIYGQKPVLKFAKVT 84 (196)
T ss_pred HHhCCeecCCC--cCCCCCccceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhh--CCeEEEEecCHHHHHHHHHHHHHh
Confidence 68999999999 69999999999999 79999999999999999999999997 999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++|+++||+||+||||.+- .| ++||+|||+||.
T Consensus 85 g~~~v~~RWlgGtLTN~~~~-----------------~~-----------------------------~~Pdlliv~dp~ 118 (196)
T TIGR01012 85 GARAIAGRFTPGTFTNPMQK-----------------AF-----------------------------REPEVVVVTDPR 118 (196)
T ss_pred CCceECCeeCCCCCCCcccc-----------------cc-----------------------------CCCCEEEEECCc
Confidence 99999999999999999730 01 599999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
.|++||+||.++||||||||||||||++|||||||||||.+|++|++|+|+++|++++.
T Consensus 119 ~~~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~~Si~li~~lla~ail~~~g 177 (196)
T TIGR01012 119 ADHQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRHSLALIYWLLAREILRMRG 177 (196)
T ss_pred cccHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999985
|
TIGR01011 describes the related protein of organelles and bacteria. |
| >TIGR00116 tsf translation elongation factor Ts | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-53 Score=446.49 Aligned_cols=218 Identities=37% Similarity=0.542 Sum_probs=199.3
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEeCCEEEEEEEecCCchhc
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA 294 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~~~~g~iveln~etdfva 294 (837)
...++|+||++||+||++||+||.++|||+|+|++|||++|+++|+||++|.|+||+|++|++++.|+||||||||||||
T Consensus 4 sa~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRkkG~akA~Kk~~R~a~EG~V~~~~~~~~~~ivElncETDFVA 83 (290)
T TIGR00116 4 TAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRESGIAKAAKKADRVAAEGVIVLKSDGNKAVIVEVNSETDFVA 83 (290)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhHHHHhcccccCCcEEEEEEcCCEEEEEEEecCCcccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCCCChhhhhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeC-CeEEEEeeC-CeEE
Q psy13351 295 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTN-NNLISYLHD-NKIG 372 (837)
Q Consensus 295 ~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g-~~i~~Y~H~-~~~~ 372 (837)
||+.|++|+++|++++++.++.+++++.+..+. ++.|| |.+.+.++++||||+|+||.++..+ +.+++|+|+ ||||
T Consensus 84 rne~F~~l~~~ia~~~~~~~~~~~e~l~~~~~~-~~~tv-d~i~~~~a~iGEnI~lrR~~~~~~~~~~v~~Y~H~~gkig 161 (290)
T TIGR00116 84 KNAGFKEFANKLLDELKANKITTLEELQAQELE-NREKV-EYLAALAAKIGENINLRRVAVLEGDSNVIGSYLHAGARIG 161 (290)
T ss_pred CChHHHHHHHHHHHHHHhcCCCCHHHHhhcccc-CCCcH-HHHHHHHHHhccceEEEEEEEEecCCCcEEEEEcCCCcEE
Confidence 999999999999999999999999998887664 45699 9999999999999999999999853 479999996 6999
Q ss_pred EEEEecCC-ChhHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhccCCCccccccc
Q psy13351 373 VIVEYNGD-NESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSI 440 (837)
Q Consensus 373 ~~v~~~~~-~~~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~g~~~~i~~~~ 440 (837)
+||.+++. ++++|++||||||||+|.||++++||++++++|++++..++.. +|+|..+.+++
T Consensus 162 vlv~~~~~~~~~~ak~iAmhIaA~~P~~l~~~~vp~~vie~Erei~~~~~~~------~gKP~~i~eKI 224 (290)
T TIGR00116 162 VLVALKGKADEELAKHIAMHVAASKPQFIDPDDVSAEVVKKERQIQTDQAEL------SGKPKEIAEKM 224 (290)
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCccCchhhCCHHHHHHHHHHHHHHHHh------cCCcHHHHHHH
Confidence 99999985 4578999999999999999999999999999999998888533 47886555544
|
This protein is found in Bacteria, mitochondria, and chloroplasts. |
| >PRK09377 tsf elongation factor Ts; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=446.05 Aligned_cols=218 Identities=42% Similarity=0.611 Sum_probs=201.7
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEeCCEEEEEEEecCCchhc
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA 294 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~~~~g~iveln~etdfva 294 (837)
...++|+||++||+||++||+||.++|||+|+|++|||++|.++|+||++|.|+||+|+++++++.|+||||||||||||
T Consensus 5 s~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G~akA~Kk~~R~a~EG~I~~~~~~~~~~~vElncETDFVA 84 (290)
T PRK09377 5 TAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAAKVDGNKGVLVEVNSETDFVA 84 (290)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhhHHHhcCccccceEEEEEeCCCEEEEEEEecCCcccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCCCChhhhhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEee-CCeEEEEeeC-CeEE
Q psy13351 295 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKT-NNNLISYLHD-NKIG 372 (837)
Q Consensus 295 ~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~-g~~i~~Y~H~-~~~~ 372 (837)
||+.|++|+++|+.++++..|.+++++.+..+ ++.||+|.+.+.++++||||+|+||.+++. |+.+++|+|+ ||||
T Consensus 85 rne~F~~l~~~i~~~~l~~~~~~~e~ll~~~~--~g~tv~d~i~~~~~~iGEnI~l~R~~~~~~~~~~i~~Y~H~~gkig 162 (290)
T PRK09377 85 KNEDFQALANEVAEAALAAKPADVEALLALKL--DGGTVEEARTELIAKIGENISLRRFARLEKDGGVVGSYLHGGGRIG 162 (290)
T ss_pred CChHHHHHHHHHHHHHHhcCCCCHHHHHhccc--cCCcHHHHHHHHHHHhcCceEEEEEEEEeecCCEEEEEEcCCCcEE
Confidence 99999999999999999999999999877666 357999999999999999999999999974 6789999998 5999
Q ss_pred EEEEecCCChhHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhccCCCccccccc
Q psy13351 373 VIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSI 440 (837)
Q Consensus 373 ~~v~~~~~~~~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~g~~~~i~~~~ 440 (837)
+||.+++.++++|++||||||||+|.||++++||++++++|++++..++.. .|+|..+.+++
T Consensus 163 vlV~~~~~~~~~ak~iAMhIaA~~P~~l~~~~vp~~~i~~E~~i~~~~~~~------~gKP~~i~eKI 224 (290)
T PRK09377 163 VLVALEGGDEELAKDIAMHIAAMNPEYLSREDVPAEVVEKEREIAKEQAKE------EGKPEEIVEKI 224 (290)
T ss_pred EEEEEccCcHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHHHh------cCChHHHHHHH
Confidence 999999988889999999999999999999999999999999998888633 37776555544
|
|
| >PRK00083 frr ribosome recycling factor; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=417.62 Aligned_cols=183 Identities=48% Similarity=0.729 Sum_probs=180.4
Q ss_pred hhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHH
Q psy13351 655 SDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAI 734 (837)
Q Consensus 655 ~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI 734 (837)
++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+++|+|++++|++|+|+|||++++++|++||
T Consensus 3 ~~~~~~~~~~m~kai~~l~~~l~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~p~D~~~i~~I~kAI 82 (185)
T PRK00083 3 NEILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWDKSMLKAIEKAI 82 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEEECCCCccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHH
Q psy13351 735 NEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQK 814 (837)
Q Consensus 735 ~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~ 814 (837)
++||||+||+.||++||||||+||+|+|++++|.||+++|++|++||||||++++++|+++|++.+|||+.++++++||+
T Consensus 83 ~~s~lgl~P~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQk 162 (185)
T PRK00083 83 RASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQK 162 (185)
T ss_pred HHCCCCCCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 815 LTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 815 l~~~~~~~id~~~~~kekei~~~ 837 (837)
+||+|++++|+++++||||||+|
T Consensus 163 ltd~~i~~id~~~~~Kekeim~v 185 (185)
T PRK00083 163 LTDKYIKKIDELLAAKEKEIMEV 185 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986
|
|
| >PRK04020 rps2P 30S ribosomal protein S2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-53 Score=425.14 Aligned_cols=169 Identities=26% Similarity=0.400 Sum_probs=160.1
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+ .|||+|+|||||.| +|+|||||++|+.+|++||++|..+ ++|+||||||+++++.+|+++|+++
T Consensus 15 ll~ag~H~Gh~--~~np~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~--~~~~ILfVgTk~~~~~~v~k~A~~~ 90 (204)
T PRK04020 15 YLAAGVHIGTQ--QKTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRY--EPEKILVVSSRQYGQKPVQKFAEVV 90 (204)
T ss_pred HHhCCeEcCCC--cCCCCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 68999999999 47999999999999 6999999999999999999999997 6899999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++|+++||+||+||||+. + ++ .+||+||++||.
T Consensus 91 g~~~v~~RWlgG~LTN~~~-----~---------------------------------~~--------~~Pdliiv~dp~ 124 (204)
T PRK04020 91 GAKAITGRFIPGTLTNPSL-----K---------------------------------GY--------IEPDVVVVTDPR 124 (204)
T ss_pred CCeeecCccCCCcCcCcch-----h---------------------------------cc--------CCCCEEEEECCc
Confidence 9999999999999999972 0 00 399999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++||+||.++||||||||||||||++|||||||||||++|++|++|+|+++|++++..
T Consensus 125 ~~~~AI~EA~kl~IP~IaivDTn~dp~~VdypIP~Ndds~~SI~li~~ll~~aIl~~kg~ 184 (204)
T PRK04020 125 GDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALALVYWLLAREILRERGE 184 (204)
T ss_pred ccHHHHHHHHHhCCCEEEEEeCCCCcccCceeECCCCchHHHHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999999999999999999999999999843
|
|
| >TIGR00496 frr ribosome recycling factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=405.67 Aligned_cols=175 Identities=46% Similarity=0.731 Sum_probs=173.2
Q ss_pred HhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCcc
Q psy13351 663 QKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLN 742 (837)
Q Consensus 663 ~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~ 742 (837)
++|++++++|+++|+++|+||+||++||+|+|+|||+++||+++|+|+++++++|.|+|||++++++|++||++||||+|
T Consensus 2 ~~M~k~i~~~~~~l~~irtGra~p~ild~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~lgln 81 (176)
T TIGR00496 2 ERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDLGLN 81 (176)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHH
Q psy13351 743 PTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILE 822 (837)
Q Consensus 743 p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~ 822 (837)
|+.||++||||||+||+|+|++++|.+|+.+|++|++||||||++++++|+++|++.+|||+.++++++||++||+|+++
T Consensus 82 P~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~ 161 (176)
T TIGR00496 82 PNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKK 161 (176)
T ss_pred cccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcC
Q psy13351 823 INQLLINKEKEILTL 837 (837)
Q Consensus 823 id~~~~~kekei~~~ 837 (837)
+|+++++||||||+|
T Consensus 162 id~~~~~Kekeim~v 176 (176)
T TIGR00496 162 IDEILKDKEKELMEV 176 (176)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999986
|
This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily. |
| >PTZ00254 40S ribosomal protein SA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-52 Score=425.43 Aligned_cols=169 Identities=25% Similarity=0.364 Sum_probs=160.8
Q ss_pred CceeceeeccccCCCCCCCcCcccce-eCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGH-RNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~-r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||++|+||||+ +|||+|+|||||+ |+|+|||||.+|+.+|++|+++|..+ .+++.|||||||++++.+|+++|.++
T Consensus 18 lL~agvHlG~~--~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i-~~~~~Il~Vstr~~~~~~V~k~A~~t 94 (249)
T PTZ00254 18 MLACKCHIGTK--NLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAI-ENPADVVVVSSRPYGQRAVLKFAQYT 94 (249)
T ss_pred HHhcCceeccC--cCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHH-hCCCcEEEEEcCHHHHHHHHHHHHHh
Confidence 68999999985 8999999999997 59999999999999999999999998 67999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++||++||+||+||||.+- .| ++||+|||+||.
T Consensus 95 g~~~i~~Rw~pGtlTN~~~~-----------------~f-----------------------------~~P~llIV~Dp~ 128 (249)
T PTZ00254 95 GASAIAGRFTPGTFTNQIQK-----------------KF-----------------------------MEPRLLIVTDPR 128 (249)
T ss_pred CCeEECCcccCCCCCCcccc-----------------cc-----------------------------CCCCEEEEeCCC
Confidence 99999999999999999640 11 599999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
.|++||+||+++||||||||||||||++|||||||||||++||+|++|+|+++|+++++
T Consensus 129 ~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~Ndds~~SI~li~~lLar~Vl~~rG 187 (249)
T PTZ00254 129 TDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALMYWLLAREVLRLRG 187 (249)
T ss_pred cchHHHHHHHHhCCCEEEEecCCCCcccCceeeCCCCchHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999986
|
|
| >cd00520 RRF Ribosome recycling factor (RRF) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=399.02 Aligned_cols=178 Identities=49% Similarity=0.724 Sum_probs=175.7
Q ss_pred hhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhc
Q psy13351 658 KKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEA 737 (837)
Q Consensus 658 ~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s 737 (837)
+.+++++|++++++|+++|+++|+||+||++||+|+|+|||+++||+++|+|+++++++|+|+|||++++++|++||++|
T Consensus 2 ~~~~~~~m~k~i~~~~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Vsv~~~~~l~I~p~D~~~i~~I~kAI~~s 81 (179)
T cd00520 2 LKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNS 81 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEeecchhhHHHHHHHHHHC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHH
Q psy13351 738 NLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTD 817 (837)
Q Consensus 738 ~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~ 817 (837)
|||+||++||++|+||||+||+|+|++++|.||+.+|++|++|||+||++++++|++++++.+|||+.++++++||++||
T Consensus 82 ~l~l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd 161 (179)
T cd00520 82 DLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTD 161 (179)
T ss_pred CCCCCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy13351 818 KFILEINQLLINKEKEIL 835 (837)
Q Consensus 818 ~~~~~id~~~~~kekei~ 835 (837)
+|++++|++++.||||||
T Consensus 162 ~~i~~id~~~~~Kekeim 179 (179)
T cd00520 162 EYIKKIDELLKSKEKELL 179 (179)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999999997
|
Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species. |
| >KOG0832|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=401.70 Aligned_cols=190 Identities=35% Similarity=0.634 Sum_probs=172.0
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
|+.||+||||+++.|||.|+|||||+|+|+|||||++|..+|++|++|+.+++..+|.||||||++.....|..+|++++
T Consensus 53 L~~agvHlGh~t~~wn~~m~pyiyG~R~Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~ 132 (251)
T KOG0832|consen 53 LFNAGVHLGHKTGKWNPRMKPYIYGKRLGIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAG 132 (251)
T ss_pred HHhccccccccccccCcccchhhcccccCcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++|++.+|.||+||||.++...+.+ .|..++++- +| ..+.-||+|||+||.+
T Consensus 133 gy~~~~~w~~G~lTN~~~l~g~~~~-----------~~~~~pd~~-------------~f----~~t~~~D~vvvln~~e 184 (251)
T KOG0832|consen 133 GYSHNRKWLGGLLTNARELFGALVR-----------KFLSLPDAL-------------CF----LPTLTPDLVVVLNPEE 184 (251)
T ss_pred Cceeeeeeccceeecchhhcccccc-----------cccCCCcce-------------ee----cccCCcceeEecCccc
Confidence 9999999999999999987544332 222222211 11 1234679999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
++.|+.||.+++||||||+||||+|+++||||||||||+.|+.|+++++..|+.+|+.
T Consensus 185 ~~sAilEA~K~~IPTIgIVDtN~~P~liTYpVPaNDDs~~sv~f~~~l~k~ai~~g~~ 242 (251)
T KOG0832|consen 185 NHSAILEAAKMAIPTIGIVDTNCNPELITYPVPANDDSPASVEFILNLLKRAIARGKQ 242 (251)
T ss_pred ccHHHHHHHHhCCCeEEEecCCCCccceeeccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999974
|
|
| >PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=355.46 Aligned_cols=165 Identities=48% Similarity=0.713 Sum_probs=160.6
Q ss_pred HHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCccceecCCee
Q psy13351 671 ILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNII 750 (837)
Q Consensus 671 ~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~p~~~~~~i 750 (837)
||+++|+++|+||+||++||+|+|++||+.+||+++|+|+++++++|+|+|||++++++|++||++|+||+||+.||+.|
T Consensus 1 ~~~~~l~~ir~gr~~p~~ld~i~V~~~g~~~~L~~lA~V~~~~~~~l~I~~~d~~~i~~I~kAI~~s~l~l~p~~d~~~i 80 (165)
T PF01765_consen 1 HFKEELSKIRTGRANPAILDNIKVEYYGSKVPLNELAQVSVKDPRTLVITPYDPSLIKAIEKAIQKSNLNLNPQNDGNTI 80 (165)
T ss_dssp HHHHHHHTSSSSSSSGGGGTTSEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTHHHHHHHHHHHTTSSSEEEEETTEE
T ss_pred ChHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEeccccchHHHHHHHHHCCCCCCcccCCcEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 751 YVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 830 (837)
Q Consensus 751 ~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 830 (837)
+|+||+||+|+|++++|.||+.+|+||++||++|+++++++|++++++.+|+|+.++++++||++||+|++++|++++.|
T Consensus 81 ~v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 160 (165)
T PF01765_consen 81 RVPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKKK 160 (165)
T ss_dssp EEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q psy13351 831 EKEIL 835 (837)
Q Consensus 831 ekei~ 835 (837)
|||||
T Consensus 161 ekell 165 (165)
T PF01765_consen 161 EKELL 165 (165)
T ss_dssp HHHHC
T ss_pred HHhhC
Confidence 99998
|
Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A .... |
| >PRK12332 tsf elongation factor Ts; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=336.63 Aligned_cols=146 Identities=46% Similarity=0.636 Sum_probs=139.4
Q ss_pred ccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEe--CCEEEEEEEecCCchh
Q psy13351 216 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDFV 293 (837)
Q Consensus 216 g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~--~~~g~iveln~etdfv 293 (837)
..++|+||++||+||++||+||.+++||+|+|++|||++|+++|+||++|.|+||+|++|+| ++.|+|||||||||||
T Consensus 5 a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDFV 84 (198)
T PRK12332 5 AKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLVELNCETDFV 84 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEEEEeccCCcc
Confidence 45789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhcCCCChhh----------------------------------------------hhccccc
Q psy13351 294 AKNNEFIKFSKKIAKLITENTPINLDQ----------------------------------------------LNNLKIK 327 (837)
Q Consensus 294 a~n~~f~~la~~ia~~iaa~~p~~~~~----------------------------------------------l~q~~i~ 327 (837)
|||+.|++|+++||||||+++|.+++. +.|+|+.
T Consensus 85 a~n~~F~~lak~iamhIaA~~P~~l~~~~v~~~~i~~E~~i~~~~~~~~gKP~~i~ekiv~Grl~K~~~E~~Ll~Q~fv~ 164 (198)
T PRK12332 85 ARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVIEKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFIK 164 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhhCCccCChhhCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHHHHHHHhhhhhhcCcccC
Confidence 999999999999999999999976543 5789999
Q ss_pred CCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCe
Q psy13351 328 NNLLTVDEKCKELISRIGENIKIRRFKLFKTNNN 361 (837)
Q Consensus 328 d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~ 361 (837)
|++.||+|++.+.++++||||+|+||.||++|||
T Consensus 165 d~~~TV~e~l~e~~a~iGEnI~V~rF~R~evGeg 198 (198)
T PRK12332 165 DPSKTVEDLIKEAIAKIGENIVVRRFARFELGEG 198 (198)
T ss_pred CCCccHHHHHHHHHHHhCCCeEEEEEEEEEcCCC
Confidence 8889999999999999999999999999999985
|
|
| >CHL00098 tsf elongation factor Ts | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=330.13 Aligned_cols=147 Identities=45% Similarity=0.590 Sum_probs=140.2
Q ss_pred cchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEe--CCEEEEEEEecCCchhc
Q psy13351 217 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDFVA 294 (837)
Q Consensus 217 ~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~--~~~g~iveln~etdfva 294 (837)
.++|+||++||+||++||+||.++|||+|+|++|||++|+++|+||++|.|++|+|++|+| +++|||||+||||||||
T Consensus 3 ~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~~~a~kk~~r~~~eG~V~~yiH~~gk~gvlVeln~ETDfVA 82 (200)
T CHL00098 3 ELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQKGLASANKKSTRITTEGLIESYIHTGGKLGVLVEINCETDFVA 82 (200)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhccccccCeEEEEEecCCCEEEEEEEecCccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhc-CCCChhh----------------------------------------------hhccccc
Q psy13351 295 KNNEFIKFSKKIAKLITEN-TPINLDQ----------------------------------------------LNNLKIK 327 (837)
Q Consensus 295 ~n~~f~~la~~ia~~iaa~-~p~~~~~----------------------------------------------l~q~~i~ 327 (837)
||+.|++||++|||||||+ +|.+++. ++|+|++
T Consensus 83 rn~~F~~la~~IAmhiaA~p~p~~l~~~~vp~~~i~~E~~i~~~~~~~~gKp~~i~ekiv~Grl~k~~~e~~LLeQ~fv~ 162 (200)
T CHL00098 83 RREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLEKKIESEKDDLQNKPEEIKEKIVEGRIKKRLKELSLLDQPFIR 162 (200)
T ss_pred ccHHHHHHHHHHHHHHHcCCCCeEecHHHCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhhHHHHHHHHhhhhcCcccC
Confidence 9999999999999999999 6876543 7899999
Q ss_pred CCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeEE
Q psy13351 328 NNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI 363 (837)
Q Consensus 328 d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i~ 363 (837)
|++.||+|++++.++++||||+|+||.||++|||+.
T Consensus 163 D~~~TV~~~l~e~~akiGeni~V~rF~R~~vGegie 198 (200)
T CHL00098 163 DQSITVEELIKQNIAKLGENIQIRRFARFTLGEGEE 198 (200)
T ss_pred CCCccHHHHHHHHHHhcCCCcEEEEEEEEEecCCcc
Confidence 999999999999999999999999999999999863
|
|
| >KOG4759|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=328.92 Aligned_cols=182 Identities=40% Similarity=0.558 Sum_probs=175.7
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCC-cccHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKK 732 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d-~~~~~~I~k 732 (837)
...+..++.++|+++++.|+++|.++++||++|.+||+|.|+++|.++||++||+||.++|++|+|+||| |..+++|++
T Consensus 81 ~~~~~~~~~sqmek~ie~lke~~~k~~~gr~~~~~~d~I~vk~~g~~~~L~~IA~vS~K~p~~ilIn~~d~p~~ikai~k 160 (263)
T KOG4759|consen 81 ENAVEAKANSQMEKTIEALKEDFNKIRQGRFNPGMLDKIVVKANGPKRPLNEIAQVSLKGPQTILINPFDFPVDIKAILK 160 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhheeeecCCCcccHHHHHHHhcCCCceEEEecccCchHHHHHHH
Confidence 3567789999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHH
Q psy13351 733 AINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDI 812 (837)
Q Consensus 733 aI~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~i 812 (837)
||.+|+||+||++||.+|+|++||+|.|+|++|+|.+++++|++|++||++|++++++++|.++. +++|+++++++++
T Consensus 161 AI~~S~lnltP~~dg~~l~vsiP~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~--~~~D~vkkae~~l 238 (263)
T KOG4759|consen 161 AIEASGLNLTPNLDGTVLRVSIPPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS--LSEDEVKKAEAEL 238 (263)
T ss_pred HHHhCCCCCCcCCCCcEEEecCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877553 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 813 QKLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 813 q~l~~~~~~~id~~~~~kekei~~~ 837 (837)
|+++|+|++++|++++.||||||..
T Consensus 239 ~~l~k~~v~~ld~llkskeKellk~ 263 (263)
T KOG4759|consen 239 QKLAKDAVNKLDDLLKSKEKELLKQ 263 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999863
|
|
| >COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=320.93 Aligned_cols=233 Identities=50% Similarity=0.796 Sum_probs=222.3
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
++|+++|+ +|+.+..+.+..+|++.+++++++|+++.+.|+++.||+|||+.++++.....++++...|+++|+++++
T Consensus 5 ~~rillkL--sGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvm 82 (238)
T COG0528 5 YMRILLKL--SGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVM 82 (238)
T ss_pred eEEEEEEe--ecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHH
Confidence 46778887 7887777677889999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
|+.+|.+.|...|++++.+++..+..+..+++.+...++++.|.|+|++|+.|+|++|+|+.|+++|..++||.++..|+
T Consensus 83 Nal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn 162 (238)
T COG0528 83 NALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATN 162 (238)
T ss_pred HHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEecc
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999995
Q ss_pred -cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 574 -VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 574 -VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|||||++||+.+|+|++++++||.|+.+.+..++|++|+.+|+++++|++++|+.+++++.+++.|+..||+|.+
T Consensus 163 ~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~ 238 (238)
T COG0528 163 KVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP 238 (238)
T ss_pred CCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999863
|
|
| >KOG1071|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=328.69 Aligned_cols=187 Identities=33% Similarity=0.487 Sum_probs=164.6
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhh----hhhhhcccccCCCeeEEEEeCCEEEEEEEecCC
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGK----KILNISNRNAKDGVIAIYISEKVGSLVEINCET 290 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~----~a~kk~~r~~~eG~i~~y~~~~~g~iveln~et 290 (837)
+..++|+||++||++|++||+||+|+|||+..|.+||+|++++ +|+|+++|.|+||+|++|+|+..+|||||||||
T Consensus 46 ~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~~L~k~aqk~g~~~A~K~~sR~t~eGlIgv~~~~~r~vlvElNCET 125 (340)
T KOG1071|consen 46 SKALLKKLREKTGASMVNCKKALEECGGDLVLAEEWLHKKAQKEGWSKAAKKASRTTKEGLIGVLQEDGRTVLVELNCET 125 (340)
T ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhhHHhhhcccccccceeEEEEeCCeEEEEEeeccc
Confidence 4456899999999999999999999999999999999999654 699999999999999999997777999999999
Q ss_pred chhccchHHHHHHHHHHHHHHh------cCCCChh-------------------hhhcccccCCCccHHHHHHHHHHhhC
Q psy13351 291 DFVAKNNEFIKFSKKIAKLITE------NTPINLD-------------------QLNNLKIKNNLLTVDEKCKELISRIG 345 (837)
Q Consensus 291 dfva~n~~f~~la~~ia~~iaa------~~p~~~~-------------------~l~q~~i~d~~~tv~~~~~~~~~~~g 345 (837)
||||||+.|+.|+.+||+.+++ .+|..++ .+.+.+..+++.|++|.+++.++++|
T Consensus 126 DFVARn~~Fq~Lv~~iA~~~l~~~~~~~~~~s~~s~e~~l~~~~~g~kl~~~~~~l~~~~d~~gkvsl~d~l~~~i~~~G 205 (340)
T KOG1071|consen 126 DFVARNDIFQDLVDQIALSVLAHCQTLKTKHSSYSKEKELEMDGRGFKLSESLSLLPNLPDVEGKVSLKDQLALAIGKLG 205 (340)
T ss_pred chhhccchHHHHHHHHHHHHHHhhhhcccChhhhhhhhhccccchHHHhhHHHhhccCCCCcccceeHHHHHHHHHHHhc
Confidence 9999999999999999999887 2333222 15677777788899999999999999
Q ss_pred CceEEEEEEEEeeCCe--EEEEeeC------------CeEEEEEEecCCCh------hHHHHHHhhhhccCccccC
Q psy13351 346 ENIKIRRFKLFKTNNN--LISYLHD------------NKIGVIVEYNGDNE------SAVKDVAMHIAAMKPIALS 401 (837)
Q Consensus 346 e~i~l~rf~~~~~g~~--i~~Y~H~------------~~~~~~v~~~~~~~------~~~~~iamhi~a~~p~~l~ 401 (837)
||++++||.+|+.+++ +++|.|+ |++|++|+++...+ .+++.|+.||++|+|..+.
T Consensus 206 ENvkvrR~~~~ka~~g~~l~~y~H~A~q~agt~~l~~g~~~alvAi~~~~s~~~~~~~~~~~i~q~ivgm~p~s~~ 281 (340)
T KOG1071|consen 206 ENVKVRRAACMKAPSGTYLGSYSHGAPQSAGTHKLPLGEYGALVAINSVSSQLTSLEDVAKQICQHIVGMSPESVG 281 (340)
T ss_pred cceEEeEEEEEecCCCceEEeeecCCCCCccccccccccchhhhhhhhccchhhhHHHHHHHHHHHhhccChhhhc
Confidence 9999999999998664 9999995 37899998866443 4789999999999999887
|
|
| >PRK14556 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=319.65 Aligned_cols=234 Identities=44% Similarity=0.680 Sum_probs=218.2
Q ss_pred HHHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccc-cCCCcchHHHHHHHHH
Q psy13351 413 EYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-QNIDRSTADYMGMLAT 491 (837)
Q Consensus 413 ek~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~-~~~~~~~~~~~~~~~~ 491 (837)
.++|+++|+ +|+++..++...++++.+.+++++|+++.+.|+++.||+|||+.+++..... .++++...|+++|+++
T Consensus 14 ~~~rvllKl--sGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT 91 (249)
T PRK14556 14 KLKRILLKL--SGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIAT 91 (249)
T ss_pred hhCEEEEEE--ehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHH
Confidence 367889997 7887776677789999999999999999999999999999999999855553 4688999999999999
Q ss_pred HHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEe
Q psy13351 492 IINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA 571 (837)
Q Consensus 492 ~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liil 571 (837)
.+|+.+|.++|...|++++.+++.....+.++++.+.+.++++.|.|||+.|+.|+|++|+|++|+++|..++||.|+++
T Consensus 92 ~iNal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~ 171 (249)
T PRK14556 92 MINALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKA 171 (249)
T ss_pred HHHHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred eccCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 572 TKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 572 TDVdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
||||||||+||+.+|+|++++++++.+..+.+..++|+.|++.|.++|+|++|+|+.+|++|.+++.|+.+||+|.-
T Consensus 172 TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 172 TTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL 248 (249)
T ss_pred eCCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence 99999999999999999999999999888777788999999999999999999999999999999999999999963
|
|
| >PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=301.66 Aligned_cols=166 Identities=42% Similarity=0.672 Sum_probs=142.0
Q ss_pred cCCCeeEEEEeCCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhhhhcccccCCCccHHHHHHHHHHhhCC
Q psy13351 267 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGE 346 (837)
Q Consensus 267 ~~eG~i~~y~~~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~i~d~~~tv~~~~~~~~~~~ge 346 (837)
|+||+|+++++++.|+||||||||||||||++|++|+++||.+++...+.+++++.+..+.+ .||+|.+.++++++||
T Consensus 1 a~EG~V~~~v~~~~a~~vElncETDFVArn~~F~~l~~~ia~~~~~~~~~~~~~l~~~~~~~--~tv~d~i~~~i~~igE 78 (221)
T PF00889_consen 1 AAEGLVGIAVSGDKAAMVELNCETDFVARNEEFQNLAKEIADAALENKASDVEELLALPLAS--KTVKDAIAELIAKIGE 78 (221)
T ss_dssp --EEEEEEEEETTEEEEEEEEESSHHHHTSHHHHHHHHHHHHHHHCTTEESHHHHHHSB--S--SHHHHHHHHHHHHH-S
T ss_pred CCceEEEEEEeCCcEEEEEEEccccceecCHHHHHHHHHHHHHHHHhCCCCHHHHHhccccc--ccHHHHHHHHHHHhCC
Confidence 57999999999888999999999999999999999999999999988889999988877765 7999999999999999
Q ss_pred ceEEEEEEEEee-CCeEEEEeeC-CeEEEEEEecCCCh---hHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHH
Q psy13351 347 NIKIRRFKLFKT-NNNLISYLHD-NKIGVIVEYNGDNE---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA 421 (837)
Q Consensus 347 ~i~l~rf~~~~~-g~~i~~Y~H~-~~~~~~v~~~~~~~---~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~ 421 (837)
||+|+||.+++. ++.+++|+|+ ||+|+||.+++.++ ++|++||||||||+|.||++++||++++++|++++..++
T Consensus 79 nI~l~r~~~~~~~~~~v~~Y~H~~gkig~lV~~~~~~~~~~~~ak~iAmhIaA~~P~~l~~~~vp~~~~~~E~~i~~~~~ 158 (221)
T PF00889_consen 79 NIQLRRAARISAPNGFVGSYVHNNGKIGVLVALEGDNDSAKEFAKDIAMHIAAMNPKYLSEEDVPAEVLEKEKEIAKEQA 158 (221)
T ss_dssp -EEEEEEEEEE-TTSEEEEEEET-TTEEEEEEEET-SHGGHHHHHHHHHHHHHH--SBSSCTGS-CCHHHHHHHHHHHHH
T ss_pred CEEEeEEEEEeccCCEEEEEECCCCcEEEEEEEEcCcchHHHHHHHHHHHHhhhCccccCcccCCHHHHHHHHHHHHHHh
Confidence 999999999987 4679999999 89999999999887 799999999999999999999999999999999988886
Q ss_pred hhhhhhhccCCCccccccc
Q psy13351 422 QQLGEALMKGDAYNINSSI 440 (837)
Q Consensus 422 ~~~gs~~~~g~~~~i~~~~ 440 (837)
.. .|+|..+.+++
T Consensus 159 ~~------~gKpe~i~ekI 171 (221)
T PF00889_consen 159 KA------EGKPENIIEKI 171 (221)
T ss_dssp HT------TTS-HHHHHHH
T ss_pred hc------cCCcHHHHHHH
Confidence 43 37777665554
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the C-terminal dimerisation domain found primarily in EF-Tu (EF1A) proteins from bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular; PDB: 1XB2_B 3AVU_A 3AVW_A 3AGQ_A 3AGP_A 3AVT_A 3AVY_A 3AVX_A 3AVV_A 1TFE_A .... |
| >PRK14558 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=301.47 Aligned_cols=228 Identities=41% Similarity=0.664 Sum_probs=197.6
Q ss_pred HHHHHHhhhhhhhccCC-CccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGD-AYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~-~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
|+++| .|+++++++ +..++.+.+++++++|+++++.|++++||||||+.+++... .++++...+.+++..+.++
T Consensus 2 riviK---lGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~--~~~~~~~~d~ig~~~~~ln 76 (231)
T PRK14558 2 RVLLK---LSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVEL--KELSPTRADQIGMLGTVIN 76 (231)
T ss_pred eEEEE---eeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhc--cCCChHHHHHHHHHHHHHH
Confidence 56788 555666554 56799999999999999999999999999999987665332 2445556788888777778
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 574 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDV 574 (837)
+.++..+|..+|++++.+++........+.+.+.+..+++.|.|||++|+.|.+..++|++|+++|..|+||.+++||||
T Consensus 77 ~~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdV 156 (231)
T PRK14558 77 ALYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKV 156 (231)
T ss_pred HHHHHHHHHHcCCCeEEeccccccchhhhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecC
Confidence 88889999999999988876432211234457788999999999999999888999999999999999999999999999
Q ss_pred CccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 575 DGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 575 dGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|||||+||+.+|+|+++++++++|+.+.|..++|+.|+++|.++|++++|+||.+|+++.+++.|+.+||+|.+
T Consensus 157 dGvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 157 DGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP 230 (231)
T ss_pred CeeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999976
|
|
| >PRK00358 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=301.10 Aligned_cols=230 Identities=52% Similarity=0.834 Sum_probs=199.5
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINS 495 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (837)
++|+|. +|+.+...++..++.+.+++++++|+++++.|+++|||||||+.++++.....+++...++..+++++.+++
T Consensus 2 ~iViK~--GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 79 (231)
T PRK00358 2 RVLLKL--SGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMDRATADYMGMLATVMNA 79 (231)
T ss_pred eEEEEe--ccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCCChhhHHHHHHHHHHHHH
Confidence 356784 455444445667899999999999999999999999999999888876532234555678999999998999
Q ss_pred HHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccC
Q psy13351 496 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD 575 (837)
Q Consensus 496 ~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDVd 575 (837)
.+|+..|..+|+++..+++...+....++..+.+.+++++|.|||++|+.|+++.++|++|+++|..|+||+|+++||||
T Consensus 80 ~ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVd 159 (231)
T PRK00358 80 LALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVD 159 (231)
T ss_pred HHHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcC
Confidence 89999999999999876665554444455567788999999999999988888899999999999999999999999999
Q ss_pred ccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 576 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 576 GVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||++||+.+|+|++|++++++|+.+.|++++|++|+++|.++|++++|+||.+|+++.++++|+..||+|.
T Consensus 160 GVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 160 GVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred ceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 999999999999999999999998777888999999999999999999999999999999999999999984
|
|
| >cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=296.63 Aligned_cols=228 Identities=50% Similarity=0.821 Sum_probs=205.2
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL 496 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (837)
+|+| .|++.++++...++.+.+++++++|+++.+.|++++||||||..+.++.....++++..++++++.++.+++.
T Consensus 2 iViK---iGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 78 (229)
T cd04239 2 IVLK---LSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRATADYIGMLATVMNAL 78 (229)
T ss_pred EEEE---ECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCChhhHHHHHHHHHHHHHH
Confidence 4677 5555665655589999999999999999889999999999998877766655566667789999999999999
Q ss_pred HHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccCc
Q psy13351 497 ALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG 576 (837)
Q Consensus 497 ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDVdG 576 (837)
+|+.+|..+|+++..+++.++......++.+.+..+++.|.|||++|+.|.+..++|++|+++|..|+||+|+++|||||
T Consensus 79 l~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdG 158 (229)
T cd04239 79 ALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDG 158 (229)
T ss_pred HHHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCc
Confidence 99999999999999999988766656677888999999999999999989998999999999999999999999999999
Q ss_pred cccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 577 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 577 Vy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||+||+.+|+|++|++++++|+.+..++++|++|++++.++|++++|+||..|+++.++++|+..||+|.
T Consensus 159 vy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 229 (229)
T cd04239 159 VYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229)
T ss_pred ccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence 99999999999999999999999887779999999999999999999999999999999999998999983
|
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als |
| >PRK14557 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=297.51 Aligned_cols=237 Identities=39% Similarity=0.637 Sum_probs=205.3
Q ss_pred HHHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHH
Q psy13351 413 EYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATI 492 (837)
Q Consensus 413 ek~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (837)
.++++++|+ +|+++...+...++.+.+++++++|+++.+.|++++||||||+.+++......++++..+|.++++++.
T Consensus 3 ~~~riViKl--GG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~~~~~~D~ig~~g~~ 80 (247)
T PRK14557 3 PYKRVLIKL--SGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEADNIGTLGTI 80 (247)
T ss_pred cccEEEEEe--CceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 356788896 777776555567888999999999999999999999999999877743333345677788999999999
Q ss_pred HHHHHHHHHHHHc-CCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEe
Q psy13351 493 INSLALFDILNKS-GIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA 571 (837)
Q Consensus 493 ~~~~ll~~~L~~~-gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liil 571 (837)
+++.++..+|... +..+..++...+.....++....+...+++|.|||++|+.|.|++|+|++|+++|..++||+|+++
T Consensus 81 lna~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~ 160 (247)
T PRK14557 81 INSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVA 160 (247)
T ss_pred HHHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEe
Confidence 9999999999874 666666666666555566666677888999999999999999999999999999999999999999
Q ss_pred -eccCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEee
Q psy13351 572 -TKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY 650 (837)
Q Consensus 572 -TDVdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~ 650 (837)
||||||||+||+.+|+|++|+++++.|+...+..++++.|+++|.++|++++|+||.+|++|.++++|+.+||+|.+.+
T Consensus 161 ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~ 240 (247)
T PRK14557 161 KQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA 240 (247)
T ss_pred cCCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCc
Confidence 5999999999999999999999999888666667889999999999999999999999999999999999999999875
Q ss_pred e
Q psy13351 651 I 651 (837)
Q Consensus 651 ~ 651 (837)
.
T Consensus 241 ~ 241 (247)
T PRK14557 241 S 241 (247)
T ss_pred c
Confidence 4
|
|
| >cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=295.32 Aligned_cols=229 Identities=54% Similarity=0.873 Sum_probs=201.0
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL 496 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (837)
+++|+ +||.+...+|..++.+.+++++++|+++...|+++|||||||+.+++......+......++++++.+..++.
T Consensus 3 iViKl--GGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~~~~~~~~~~d~~g~~~~~~n~~ 80 (231)
T cd04254 3 VLLKL--SGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDRATADYMGMLATVINAL 80 (231)
T ss_pred EEEEe--CceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhhhcCCCchhhhHHHHHHHHHHHH
Confidence 56775 6666655567789999999999999999888899999999998754433333344444567888888888888
Q ss_pred HHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccCc
Q psy13351 497 ALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG 576 (837)
Q Consensus 497 ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDVdG 576 (837)
+++..|...|++++.+++.+.......++.+.+..+++.|.|||++|+.|.+.+++|++|+++|..|+||+++++|||||
T Consensus 81 ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVdG 160 (231)
T cd04254 81 ALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDG 160 (231)
T ss_pred HHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCE
Confidence 99999999999999999988644445577899999999999999999989999999999999999999999999999999
Q ss_pred cccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 577 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 577 Vy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
||++||+.+|+++++++++++++.+.|..++|++|++.|.++|++++|+||.+|++|.++|+|+.+||+|+
T Consensus 161 vy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 161 VYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred EEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 99999999999999999999999888888999999999999999999999999999999999999999984
|
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be |
| >TIGR02075 pyrH_bact uridylate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=294.64 Aligned_cols=231 Identities=57% Similarity=0.845 Sum_probs=202.6
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
+++|+|+ +|+++..+++..++.+.+++++++|+++...|+++|||||||+.+.++.....+.+...+++++++.++++
T Consensus 2 ~~iViKl--GGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~~~d~~g~~~~~l~ 79 (233)
T TIGR02075 2 KRVLLKL--SGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRVTADYMGMLATVIN 79 (233)
T ss_pred CEEEEEe--ChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 3567885 56665554566789999999999999998889999999999987666543333455555789999999999
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec-
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK- 573 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTD- 573 (837)
+.+|+.+|..+|++++.+++.+.......+..+.+..++++|.|||+.|+.|.+.+++|++|+++|..|+||+|+++||
T Consensus 80 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~ 159 (233)
T TIGR02075 80 GLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNG 159 (233)
T ss_pred HHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecc
Confidence 9999999999999999999988763333466788999999999999999988999999999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||||++||+.+|+++++++++++|+.+.|...+|++|+++|.++|++++|+||.+|++|.++++|+.+||+|+
T Consensus 160 VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 160 VDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred cCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 99999999999999999999999998887778899999999999999999999999999999999999999984
|
This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076. |
| >COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=275.34 Aligned_cols=230 Identities=18% Similarity=0.197 Sum_probs=190.6
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+++|+| +||+.++...+.++...++.++++|+.|+..|++||||+||. .+.+.......-.|..+...|++++.+
T Consensus 6 ~~riVvK---iGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGA-iaaG~~~Lg~~~rp~~l~~kQA~AAVG 81 (369)
T COG0263 6 ARRIVVK---IGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGA-IAAGRTRLGLPKRPKTLAEKQAAAAVG 81 (369)
T ss_pred ceEEEEE---ECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccch-hhhChhhcCCCCCCcchHHHHHHHHhC
Confidence 4678999 788888888889999999999999999999999999997772 222333332223456778899999999
Q ss_pred HHHHHHHH---HHHcCCce--eEeehhchhhhhhccc-hHHHHHHHhCCCEEEEeCCCCCCCC--------cchHHHHHH
Q psy13351 494 NSLALFDI---LNKSGIIS--HVMSAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIGNPFF--------TTDTTAALR 559 (837)
Q Consensus 494 ~~~ll~~~---L~~~gi~a--~~l~~~~~~~~~~~~~-~~~i~~ll~~g~VPVv~G~~G~~~~--------s~D~lAa~l 559 (837)
|..+|..| |..+|+.. +.++..++....+..| ...+..+++.|.||||.. |+.+ .||++|+.+
T Consensus 82 Q~~Lm~~y~~~f~~~g~~v~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIINE---NDtva~~EikfGDND~LsA~V 158 (369)
T COG0263 82 QVRLMQLYEELFARYGIKVGQILLTRDDFSDRRRYLNARNTLSALLELGVVPIINE---NDTVATEEIKFGDNDTLSALV 158 (369)
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeecC---CCceeeeeeeecCCchHHHHH
Confidence 99999988 88888876 5666666655444344 357888999999999943 2221 199999999
Q ss_pred HHHcCCcEEEEeeccCccccCCCCCCCCceeccccCH--HHHHH----------hccccchHHHHHHHHhCCCCEEEEEc
Q psy13351 560 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSI 627 (837)
Q Consensus 560 A~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng 627 (837)
|.+++||.|++||||||+||+||+.+|+|++|++++. +|+.. +|||.+|+.|+++|.++|++++|++|
T Consensus 159 A~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g 238 (369)
T COG0263 159 AILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASG 238 (369)
T ss_pred HHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecC
Confidence 9999999999999999999999999999999999863 34443 68999999999999999999999999
Q ss_pred cCcchHHHHHcCCccceEEEEee
Q psy13351 628 IKSGALKRVIEGKNEGTLVYEIY 650 (837)
Q Consensus 628 ~~~~~i~~al~Ge~~GT~I~~~~ 650 (837)
..|+.+.+++.|+..||+|.|..
T Consensus 239 ~~~~~i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 239 SKPDVILDALEGEAVGTLFEPQA 261 (369)
T ss_pred CCcchHHHHHhCCCCccEEecCC
Confidence 99999999999999999999763
|
|
| >cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-29 Score=257.64 Aligned_cols=209 Identities=26% Similarity=0.390 Sum_probs=175.1
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccccc--CCCcchHHHHHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIIN 494 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 494 (837)
+++|+ +|| ++.++. +.+.+++++++|+++.. |++++||||||+.++.+..... +.+...++++++.++.++
T Consensus 2 iViKl--GGs-~l~~~~---~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln 74 (221)
T cd04253 2 IVISL--GGS-VLAPEK---DADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLN 74 (221)
T ss_pred EEEEe--ccc-eeCCCC---ChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence 46774 455 444433 77889999999998765 7899999999988877654432 344456789999999999
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 574 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDV 574 (837)
+.++...+. .|++++.+ +.+.+.++++.|.|||++|+. |++|+|++|+++|..|+||.|+++|||
T Consensus 75 ~~~~~~~l~-~~~~~~~~------------~~~~~~~~l~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdV 139 (221)
T cd04253 75 ARLLIAALG-DAYPPVPT------------SYEEALEAMFTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNV 139 (221)
T ss_pred HHHHHHHHh-cCCCcCCC------------CHHHHHHHHHcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCC
Confidence 998887776 67765432 356677889999999999985 578999999999999999999999999
Q ss_pred CccccCCCCCCCCceeccccCHHHHHHh--------cc-ccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceE
Q psy13351 575 DGIYNSDPNKCLSAIIYKKITFDEVISK--------KL-EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL 645 (837)
Q Consensus 575 dGVy~~dP~~~~~a~~I~~is~~e~~~~--------G~-~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~ 645 (837)
||||++||+.+|++++|++++++|+.+. |+ +++|++|++++.++|++++|+||.+|++|.++++|+.+||+
T Consensus 140 dGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~ 219 (221)
T cd04253 140 DGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTI 219 (221)
T ss_pred CeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeE
Confidence 9999999999999999999999888762 33 68899999999999999999999999999999999999999
Q ss_pred EE
Q psy13351 646 VY 647 (837)
Q Consensus 646 I~ 647 (837)
|.
T Consensus 220 I~ 221 (221)
T cd04253 220 IE 221 (221)
T ss_pred eC
Confidence 83
|
The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi |
| >TIGR02076 pyrH_arch uridylate kinase, putative | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=254.43 Aligned_cols=209 Identities=26% Similarity=0.397 Sum_probs=175.6
Q ss_pred HHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccccc--CCCcchHHHHHHHHHHHHH
Q psy13351 418 VLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIINS 495 (837)
Q Consensus 418 v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 495 (837)
++| .|+++++++. +.+.+++++++|+++.++ ++++||||||+.++.+..... +.+....+++++..+.+++
T Consensus 2 ViK---lGGs~l~~~~---~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~ 74 (221)
T TIGR02076 2 VIS---LGGSVLSPEI---DAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNA 74 (221)
T ss_pred EEE---echhhcCCCC---CHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHH
Confidence 456 4445555543 788999999999998876 899999999988877654432 3355567899999999999
Q ss_pred HHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccC
Q psy13351 496 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD 575 (837)
Q Consensus 496 ~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDVd 575 (837)
.++...|...+++++.. +.....+++..|.+||++|+. |++|+|++|+++|.+++||+|+++||||
T Consensus 75 ~~l~~ll~~~~~~~~~~------------~~~~~~~~l~~g~ipv~~G~~--~~~s~D~~A~~lA~~l~A~~li~ltdVd 140 (221)
T TIGR02076 75 MLLIAALGDDAYPKVPE------------NFEEALEAMSLGKIVVMGGTH--PGHTTDAVAALLAEFSKADLLINATNVD 140 (221)
T ss_pred HHHHHHHHhcCCCCcCC------------CHHHHHHHHHcCCEEEEcCCC--CCCCcHHHHHHHHHHcCCCEEEEEeCCC
Confidence 98888887777776542 234456778999999999974 7899999999999999999999999999
Q ss_pred ccccCCCCCCCCceeccccCHHHHHHh--------c-cccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEE
Q psy13351 576 GIYNSDPNKCLSAIIYKKITFDEVISK--------K-LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646 (837)
Q Consensus 576 GVy~~dP~~~~~a~~I~~is~~e~~~~--------G-~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I 646 (837)
|||++||+.+|++++|++++++|+.+. | +|.+|++|++++.+.|++++|+||..|+++.+++.|+..||+|
T Consensus 141 Gvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 220 (221)
T TIGR02076 141 GVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220 (221)
T ss_pred cccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEe
Confidence 999999999999999999999887661 3 5688999999999999999999999999999999999999998
Q ss_pred E
Q psy13351 647 Y 647 (837)
Q Consensus 647 ~ 647 (837)
.
T Consensus 221 ~ 221 (221)
T TIGR02076 221 E 221 (221)
T ss_pred C
Confidence 3
|
This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP. |
| >PRK12314 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=258.49 Aligned_cols=230 Identities=17% Similarity=0.211 Sum_probs=172.5
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCc-chhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
+++|+| .|++.++++...++.+.+++++++|+++++.|+++|||+|| |...+...... . .+......+++++.+
T Consensus 10 ~~iViK---~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~-~-~~~~~~~~~a~aa~G 84 (266)
T PRK12314 10 KRIVIK---VGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLD-K-RPTSLAEKQALAAVG 84 (266)
T ss_pred CEEEEE---eCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccc-c-CCCCHHHHHHHHHHh
Confidence 467889 56666666667899999999999999999999999998555 44443333222 1 122233344444444
Q ss_pred H---HHHHHHHHHHcCCce--eEeehhchhhh-hhccchHHHHHHHhCCCEEEEeCC-----CC--CCCCcchHHHHHHH
Q psy13351 494 N---SLALFDILNKSGIIS--HVMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGG-----IG--NPFFTTDTTAALRA 560 (837)
Q Consensus 494 ~---~~ll~~~L~~~gi~a--~~l~~~~~~~~-~~~~~~~~i~~ll~~g~VPVv~G~-----~G--~~~~s~D~lAa~lA 560 (837)
+ ..++..+|..+|+++ +.++..++... ........+..+++.|+|||+++. .+ ....++|++|+++|
T Consensus 85 q~~l~~~~~~~~~~~g~~~~q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA 164 (266)
T PRK12314 85 QPELMSLYSKFFAEYGIVVAQILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIVA 164 (266)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHHH
Confidence 3 445556699999987 23333333221 111235678889999999999851 11 11345999999999
Q ss_pred HHcCCcEEEEeeccCccccCCCCCCCCceeccccCH--HHHHH----------hccccchHHHHHHHHhCCCCEEEEEcc
Q psy13351 561 AEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSII 628 (837)
Q Consensus 561 ~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~ 628 (837)
.+|+||.|+|+|||||||++||+.+|+|++|+.+++ .+..+ +|+|++|+.|+..|.++|++++|+||+
T Consensus 165 ~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~ 244 (266)
T PRK12314 165 KLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGF 244 (266)
T ss_pred HHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCC
Confidence 999999999999999999999999999999999875 43333 368999999999999999999999999
Q ss_pred CcchHHHHHcCCccceEEEEe
Q psy13351 629 KSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 629 ~~~~i~~al~Ge~~GT~I~~~ 649 (837)
+|+.|.+++.|+.+||+|.|.
T Consensus 245 ~~~~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 245 NPSDILDFLEGESIGTLFAPK 265 (266)
T ss_pred CchHHHHHHcCCCCceEEccC
Confidence 999999999999999999763
|
|
| >PTZ00489 glutamate 5-kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-28 Score=255.95 Aligned_cols=228 Identities=20% Similarity=0.288 Sum_probs=177.1
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+++|+| .|+++++++. .++...+..++++++++++ ++++||||||| .++++... ++........+++++.+
T Consensus 8 ~~riVIK---lG~Svit~~~-~~~~~~~~~l~~~i~~l~~-~~~vilVssGa-va~g~~~~--~~~~~~~~~~qa~aaiG 79 (264)
T PTZ00489 8 VKRIVVK---VGSSILVDNQ-EIAAHRIEALCRFIADLQT-KYEVILVTSGA-VAAGYTKK--EMDKSYVPNKQALASMG 79 (264)
T ss_pred CCEEEEE---eccceeeCCC-CcCHHHHHHHHHHHHHHhc-CCeEEEEecCh-HhcChhhc--CCCccccHHHHHHHHhC
Confidence 5678999 6777776643 5778889999999999976 79999998776 55555422 23334445667777777
Q ss_pred HHHHHHHH---HHHcCCceeEee--hhchhhhhh-ccchHHHHHHHhCCCEEEEeCCCCCCC----C-cchHHHHHHHHH
Q psy13351 494 NSLALFDI---LNKSGIISHVMS--AISIEKFLE-SYIPLNAIKYLEEGKVVIFAGGIGNPF----F-TTDTTAALRAAE 562 (837)
Q Consensus 494 ~~~ll~~~---L~~~gi~a~~l~--~~~~~~~~~-~~~~~~i~~ll~~g~VPVv~G~~G~~~----~-s~D~lAa~lA~~ 562 (837)
+..+|..| |..+|+.+..+. ..++..... ....+.+..+|++|.|||++|....+. + ++|++|+++|..
T Consensus 80 q~~L~~~y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~ 159 (264)
T PTZ00489 80 QPLLMHMYYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHH 159 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHH
Confidence 77777666 888999874333 333322211 123567889999999999987332222 2 699999999999
Q ss_pred cCCcEEEEeeccCccccCCCCCCCCcee---ccccCHHHHHH---------hccccchHHHHHHHHhCCCCEEEEEccCc
Q psy13351 563 IKAEIILKATKVDGIYNSDPNKCLSAII---YKKITFDEVIS---------KKLEIMDSTAFSFCRDQKLPIRVFSIIKS 630 (837)
Q Consensus 563 L~Ad~liilTDVdGVy~~dP~~~~~a~~---I~~is~~e~~~---------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~ 630 (837)
++||+|+++|||||||++||+.+|+|++ +++++.+++.. +|||.+|+.|+..|.++|++++|++|.+|
T Consensus 160 l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~ 239 (264)
T PTZ00489 160 FKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHL 239 (264)
T ss_pred hCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 9999999999999999999999999988 67788765521 79999999999999999999999999999
Q ss_pred chHHHHHcCC--ccceEEEEe
Q psy13351 631 GALKRVIEGK--NEGTLVYEI 649 (837)
Q Consensus 631 ~~i~~al~Ge--~~GT~I~~~ 649 (837)
+.|.+++.|+ ..||+|.|.
T Consensus 240 ~~i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 240 EKARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred hHHHHHHcCCCCCCceEEeec
Confidence 9999999875 379999874
|
|
| >PRK13402 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-28 Score=266.18 Aligned_cols=230 Identities=18% Similarity=0.231 Sum_probs=175.8
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+++|+| .|++.+++....++++.+.+++++|+++++.|+++||||||| .+.+...... .........+++++.+
T Consensus 5 ~kriVIK---iGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGa-va~G~~~l~~-~~~~~~~~~qalaavG 79 (368)
T PRK13402 5 WKRIVVK---VGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGA-VAAGYHKLGF-IDRPSVPEKQAMAAAG 79 (368)
T ss_pred CcEEEEE---EchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCh-hhcCccccCC-CCCCCccHHHHHHHhh
Confidence 3578999 566666666678999999999999999999999999999997 2222221110 1111233445555555
Q ss_pred HHHH---HHHHHHHcCCceeEe--ehhchhhhhhcc--chHHHHHHHhCCCEEEEeCCCCC-----CCCcchHHHHHHHH
Q psy13351 494 NSLA---LFDILNKSGIISHVM--SAISIEKFLESY--IPLNAIKYLEEGKVVIFAGGIGN-----PFFTTDTTAALRAA 561 (837)
Q Consensus 494 ~~~l---l~~~L~~~gi~a~~l--~~~~~~~~~~~~--~~~~i~~ll~~g~VPVv~G~~G~-----~~~s~D~lAa~lA~ 561 (837)
+..+ +...|..+|+++..+ +..++... ..+ -...+..+|+.|.|||++++... ...++|++|+++|.
T Consensus 80 q~~l~~~~~~~f~~~g~~~aqvLlT~~d~~~~-~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~ 158 (368)
T PRK13402 80 QGLLMATWSKLFLSHGFPAAQLLLTHGDLRDR-ERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAA 158 (368)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhhH-HHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHH
Confidence 5444 445599999998654 44443211 112 13678889999999999852111 11348999999999
Q ss_pred HcCCcEEEEeeccCccccCCCCCCCCceeccccCH--HHHHH----------hccccchHHHHHHHHhCCCCEEEEEccC
Q psy13351 562 EIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIK 629 (837)
Q Consensus 562 ~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~ 629 (837)
+++||.|+++|||||||++||+.+|++++|+++++ +++.. +|+|.+|+.|+..|.++|++++|+|+..
T Consensus 159 ~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~ 238 (368)
T PRK13402 159 LADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFT 238 (368)
T ss_pred HhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCC
Confidence 99999999999999999999999999999999985 45432 6789999999999999999999999999
Q ss_pred cchHHHHHcCCccceEEEEe
Q psy13351 630 SGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 630 ~~~i~~al~Ge~~GT~I~~~ 649 (837)
|+.|.+++.|+..||+|.+.
T Consensus 239 ~~~l~~~l~g~~~GT~i~~~ 258 (368)
T PRK13402 239 ADIFNQLLKGQNPGTYFTPE 258 (368)
T ss_pred chHHHHHhcCCCCceEEecC
Confidence 99999999999999999886
|
|
| >cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-28 Score=258.53 Aligned_cols=231 Identities=17% Similarity=0.155 Sum_probs=179.8
Q ss_pred HHHHHHHHHhhhhhhhccCCCc-cccccchhhhhhhhHHhhhcCceEEEEeCc-chhhhcccccc-----------cCC-
Q psy13351 413 EYSLAVLKAQQLGEALMKGDAY-NINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI-----------QNI- 478 (837)
Q Consensus 413 ek~~~v~k~~~~gs~~~~g~~~-~i~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~-----------~~~- 478 (837)
+.+++|+| .||++++.+.. .++.+.+.+++++|++|++.|+++|||+|| |...+.+.... .+.
T Consensus 7 ~~~~iVvK---iGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~ 83 (284)
T cd04256 7 HAKRIVVK---LGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQ 83 (284)
T ss_pred cCCEEEEE---eCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhccccc
Confidence 35778999 67787766544 799999999999999999999999966666 33333322211 111
Q ss_pred ---CcchHHHHHHHHHHHHHHHHHHH---HHHcCCce--eEeehhchhhh-hhccchHHHHHHHhCCCEEEEeCCCC---
Q psy13351 479 ---DRSTADYMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIG--- 546 (837)
Q Consensus 479 ---~~~~~~~~~~~~~~~~~~ll~~~---L~~~gi~a--~~l~~~~~~~~-~~~~~~~~i~~ll~~g~VPVv~G~~G--- 546 (837)
.+..+...+++++.++..+|..| |..+|+++ +.++..++... ........+..+|+.|+|||++|+..
T Consensus 84 ~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~ 163 (284)
T cd04256 84 LKDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVAQVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSP 163 (284)
T ss_pred ccCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHHHeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccc
Confidence 24556667888888888888886 88888876 23333333221 11223567888999999999996221
Q ss_pred -----------CCCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH----------hccc
Q psy13351 547 -----------NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLE 605 (837)
Q Consensus 547 -----------~~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~----------~G~~ 605 (837)
+..+++|++|+++|..++||.|+++|||||||++||+ .|++++|++++..+... +|+|
T Consensus 164 ~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM 242 (284)
T cd04256 164 PPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGM 242 (284)
T ss_pred cccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCc
Confidence 1235799999999999999999999999999999996 69999999998766532 6889
Q ss_pred cchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 606 IMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 606 v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
.+|+.|+..|.++|++++|++|..|++|.+++.|+.+||+|.
T Consensus 243 ~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~~ 284 (284)
T cd04256 243 EAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284 (284)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEeC
Confidence 999999999999999999999999999999999999999983
|
G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. |
| >KOG0830|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-28 Score=241.42 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=148.7
Q ss_pred CCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCCCCC
Q psy13351 16 NPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT 94 (837)
Q Consensus 16 np~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~LT 94 (837)
|.+|.+|+|+.| +|+|||||.+||+.|..|++.|..+ .|++.|..+++++.++.+|.|||..+|...|.+|++||+||
T Consensus 2 ~~~~~~y~~~~~~d~~~i~~~~~twekl~~aar~i~ai-enp~dv~v~ssr~~gqravlkfa~~tgatpiag~ftpg~ft 80 (254)
T KOG0830|consen 2 NFQMEQYIYKRRSDGIYIINLGRTWEKLLLAARAIVAI-ENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFT 80 (254)
T ss_pred CcccccccccccCCceEEeeccccHHHHHHHHHHHhhc-cCccceEEEccCCcchhHHHHHHHhhCCCcccccccccccc
Confidence 678999999998 7999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcchHHHHHhhcCCC
Q psy13351 95 NFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 174 (837)
Q Consensus 95 N~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~IP 174 (837)
|..+- .| +.|.++||+||+.|++++.|++..|+|
T Consensus 81 n~iq~-----------------~f-----------------------------~epr~lvvtdpr~d~q~~~E~s~~n~p 114 (254)
T KOG0830|consen 81 NQIQA-----------------AF-----------------------------REPRLLVVTDPRADHQPLTEASYVNLP 114 (254)
T ss_pred hHHHH-----------------hh-----------------------------cCCceeeecCcccccchhhhhhhcCCc
Confidence 97641 12 699999999999999999999999999
Q ss_pred EEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 175 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 175 ~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
||+|||||+...++|+.|||||++.+||.+++|+|++.+++.+.
T Consensus 115 ~ialcnTDSpL~~VDIAIPcNNKG~hSVgl~ww~LareVLrmrg 158 (254)
T KOG0830|consen 115 TIALCNTDSPLCYVDIAIPCNNKGAHSVGVMWWMLAREVLRMRG 158 (254)
T ss_pred eEEEecCCCccceeeeeeecCCCCcccchhhhhhhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999884
|
|
| >cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=250.56 Aligned_cols=226 Identities=19% Similarity=0.221 Sum_probs=168.1
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcc-hhhhcccccccCCCcchHHH-HHHHHHHH-
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGG-NICRGISNKIQNIDRSTADY-MGMLATII- 493 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 493 (837)
+|+| .|++.++++...++.+.+.+++++|+++++.|+++||||||| ...+......... ..+.. ..+++.++
T Consensus 2 iViK---~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~~~~~~--~~~~~~~~~~~~Gq~ 76 (251)
T cd04242 2 IVVK---VGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGLEKRP--KTLPEKQALAAVGQS 76 (251)
T ss_pred EEEE---eCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhhccCcCC--CchhHHHHHHHHhHH
Confidence 4677 445555554444688999999999999999999999999873 4333222221111 12222 23333333
Q ss_pred -HHHHHHHHHHHcCCceeE--eehhchhhhhhc-cchHHHHHHHhCCCEEEEeCCCC-----CCCCcchHHHHHHHHHcC
Q psy13351 494 -NSLALFDILNKSGIISHV--MSAISIEKFLES-YIPLNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAAEIK 564 (837)
Q Consensus 494 -~~~ll~~~L~~~gi~a~~--l~~~~~~~~~~~-~~~~~i~~ll~~g~VPVv~G~~G-----~~~~s~D~lAa~lA~~L~ 564 (837)
...++..+|..+|+++.. ++..++...... ...+.+..+++.|+|||+++... ....++|++|+++|.+|+
T Consensus 77 ~l~~~~~~~l~~~Gi~~~q~l~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~ 156 (251)
T cd04242 77 LLMALYEQLFAQYGIKVAQILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVN 156 (251)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcC
Confidence 344567779999999854 333333211111 12467888899999999985211 123469999999999999
Q ss_pred CcEEEEeeccCccccCCCCCCCCceeccccC--HHHHHH----------hccccchHHHHHHHHhCCCCEEEEEccCcch
Q psy13351 565 AEIILKATKVDGIYNSDPNKCLSAIIYKKIT--FDEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGA 632 (837)
Q Consensus 565 Ad~liilTDVdGVy~~dP~~~~~a~~I~~is--~~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~ 632 (837)
||+|+|+|||||||++||+.+|++++|++++ ++++.+ .|+|.+|+.|+..+.++|++++|+||..|++
T Consensus 157 Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~ 236 (251)
T cd04242 157 ADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDV 236 (251)
T ss_pred CCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence 9999999999999999999999999999999 777654 4778889999999999999999999999999
Q ss_pred HHHHHcCCccceEEE
Q psy13351 633 LKRVIEGKNEGTLVY 647 (837)
Q Consensus 633 i~~al~Ge~~GT~I~ 647 (837)
+.+++.|+..||+|.
T Consensus 237 i~~~l~g~~~GT~i~ 251 (251)
T cd04242 237 LLDILAGEAVGTLFL 251 (251)
T ss_pred HHHHHcCCCCCeEeC
Confidence 999999999999983
|
G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir |
| >cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=251.73 Aligned_cols=207 Identities=23% Similarity=0.297 Sum_probs=174.2
Q ss_pred cchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---------ccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCce
Q psy13351 439 SIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---------IQNIDRSTADYMGMLATIINSLALFDILNKSGIIS 509 (837)
Q Consensus 439 ~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a 509 (837)
+.+++++++|+.+.+.|+++|||||||.....+... ....+....+.+...+.+.++.+++++|..+|+++
T Consensus 13 ~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a 92 (248)
T cd02115 13 ERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIKA 92 (248)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 678999999999988899999999998444332211 11233445566666667778999999999999999
Q ss_pred eEeehhchhh---------hhhccchHHHHHHHhCCCEEEEeCCCCCC--------CCcchHHHHHHHHHcCCcEEEEee
Q psy13351 510 HVMSAISIEK---------FLESYIPLNAIKYLEEGKVVIFAGGIGNP--------FFTTDTTAALRAAEIKAEIILKAT 572 (837)
Q Consensus 510 ~~l~~~~~~~---------~~~~~~~~~i~~ll~~g~VPVv~G~~G~~--------~~s~D~lAa~lA~~L~Ad~liilT 572 (837)
..+++.+... ....++.+.+..+++.|.|||++|+.+.+ ..++|++|+.+|.+|+||+|+++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~t 172 (248)
T cd02115 93 VPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILT 172 (248)
T ss_pred EEEchHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEe
Confidence 9999876522 23455788999999999999999965432 466999999999999999999999
Q ss_pred ccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEE
Q psy13351 573 KVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646 (837)
Q Consensus 573 DVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I 646 (837)
||||||++||+.+|++++|++++++|+.+ .|+|+.|+.|+..+.++|++++|+|+.+|+.+ +++.++..||+|
T Consensus 173 dV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~~~GT~I 248 (248)
T cd02115 173 DVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI 248 (248)
T ss_pred cCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCCCCCCCC
Confidence 99999999999999999999999987766 68899999999999999999999999999999 999999999986
|
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. |
| >PRK05429 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=262.50 Aligned_cols=232 Identities=22% Similarity=0.248 Sum_probs=176.8
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+++|+| .|++.++++++.++++.+.+++++|+++++.|+++||||||+ ...+.........+..+...+++++.+
T Consensus 8 ~~~iVIK---iGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa-i~~g~~~l~l~~~~~~~~~~qa~aavG 83 (372)
T PRK05429 8 ARRIVVK---VGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA-VAAGRERLGLPERPKTLAEKQAAAAVG 83 (372)
T ss_pred CCEEEEE---eChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH-hhhhHhhcCCCCCCCchHHHHHHHHHh
Confidence 3567899 566666667778999999999999999999999999999884 212111111011122333445555444
Q ss_pred HHH---HHHHHHHHcCCceeEe--ehhchhhhhhccc-hHHHHHHHhCCCEEEEeCCCC-----CCCCcchHHHHHHHHH
Q psy13351 494 NSL---ALFDILNKSGIISHVM--SAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAAE 562 (837)
Q Consensus 494 ~~~---ll~~~L~~~gi~a~~l--~~~~~~~~~~~~~-~~~i~~ll~~g~VPVv~G~~G-----~~~~s~D~lAa~lA~~ 562 (837)
+.. .+..+|..+|+++..+ +..++.......+ ...+..+++.|+|||+++... ....++|++|+++|.+
T Consensus 84 q~~L~~~~~~~l~~~gi~~~qil~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~ 163 (372)
T PRK05429 84 QSRLMQAYEELFARYGITVAQILLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANL 163 (372)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHHH
Confidence 444 4556699999998664 4444432222223 467888899999999985211 1235699999999999
Q ss_pred cCCcEEEEeeccCccccCCCCCCCCceeccccCH--HHHHH----------hccccchHHHHHHHHhCCCCEEEEEccCc
Q psy13351 563 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKS 630 (837)
Q Consensus 563 L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~ 630 (837)
|+||.|+|+|||||||++||+.+|++++|+++++ +++.+ .|+|.+|+.|+..|.++|++++|+||..|
T Consensus 164 l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~ 243 (372)
T PRK05429 164 VEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREP 243 (372)
T ss_pred cCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence 9999999999999999999999999999999986 44433 57799999999999999999999999999
Q ss_pred chHHHHHcCCccceEEEEe
Q psy13351 631 GALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 631 ~~i~~al~Ge~~GT~I~~~ 649 (837)
+++.+++.|+..||+|.+.
T Consensus 244 ~~l~~~l~g~~~GT~i~~~ 262 (372)
T PRK05429 244 DVLLRLLAGEAVGTLFLPQ 262 (372)
T ss_pred cHHHHHhcCCCCCEEEeeC
Confidence 9999999999999999986
|
|
| >TIGR01027 proB glutamate 5-kinase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-27 Score=261.11 Aligned_cols=229 Identities=20% Similarity=0.199 Sum_probs=173.2
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhh-hcccccccCCCcchHHHHHHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNIC-RGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
++|+| .|++.++++...++.+.+..++++|+++++.|+++|||||||..+ +...... -.+..+...+++++.++
T Consensus 2 riVIK---iGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~~~g~~~lg~~--~~~~~l~~~qa~aa~Gq 76 (363)
T TIGR01027 2 RIVVK---VGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAIAAGFEALGLP--ERPKTLAEKQALAAVGQ 76 (363)
T ss_pred eEEEE---eccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHHhcCccccCCC--CCccchHHHHHHHHhCh
Confidence 45778 566666665555999999999999999999999999999997332 2222221 12233444555555555
Q ss_pred HHHHH---HHHHHcCCceeEe--ehhchhhhhhccch-HHHHHHHhCCCEEEEeCCC-----CCCCCcchHHHHHHHHHc
Q psy13351 495 SLALF---DILNKSGIISHVM--SAISIEKFLESYIP-LNAIKYLEEGKVVIFAGGI-----GNPFFTTDTTAALRAAEI 563 (837)
Q Consensus 495 ~~ll~---~~L~~~gi~a~~l--~~~~~~~~~~~~~~-~~i~~ll~~g~VPVv~G~~-----G~~~~s~D~lAa~lA~~L 563 (837)
..++. ..|..+|+++..+ +..++.......+. ..+..+++.|.|||++... +....++|++|+++|.++
T Consensus 77 ~~l~~~~~~~l~~~Gi~~aqillt~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l 156 (363)
T TIGR01027 77 VRLMQLYEQLFSQYGIKVAQILLTRADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILV 156 (363)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHHc
Confidence 55444 5599999997332 33333222122222 6778889999999998321 122346999999999999
Q ss_pred CCcEEEEeeccCccccCCCCCCCCceeccccCHH--HHHH----------hccccchHHHHHHHHhCCCCEEEEEccCcc
Q psy13351 564 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD--EVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSG 631 (837)
Q Consensus 564 ~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~--e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~ 631 (837)
+||.|+|+|||||||++||+.+|+|++|+++++. ++.. .|+|.+|+.|+..|.++|++++|+|+..|+
T Consensus 157 ~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~ 236 (363)
T TIGR01027 157 GADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPE 236 (363)
T ss_pred CCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 9999999999999999999999999999999853 2221 577999999999999999999999999999
Q ss_pred hHHHHHcCCccceEEEEe
Q psy13351 632 ALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 632 ~i~~al~Ge~~GT~I~~~ 649 (837)
++.+++.|+.+||+|.+.
T Consensus 237 ~l~~~l~g~~~GT~i~~~ 254 (363)
T TIGR01027 237 KIADALEGAPVGTLFHAQ 254 (363)
T ss_pred HHHHHhcCCCCcEEEeeC
Confidence 999999999999999986
|
Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family. |
| >cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-27 Score=250.49 Aligned_cols=221 Identities=19% Similarity=0.217 Sum_probs=173.9
Q ss_pred HHHHHhhhhhhhccC--CCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---cc---CCCcchHHHHHH
Q psy13351 417 AVLKAQQLGEALMKG--DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ---NIDRSTADYMGM 488 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g--~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~~---~~~~~~~~~~~~ 488 (837)
+++| .|++++++ .+..++.+.++++++++++++ |+++|||||||+..+..... .. ..++..+...++
T Consensus 2 iVIK---iGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~g~~~g~~~~~~~~l~~~~~ 76 (252)
T cd04241 2 IILK---LGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPDGDGSFSAEGVAETHE 76 (252)
T ss_pred EEEE---EeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHhCCCcCCCchhhhhHHHHHH
Confidence 3567 55555644 356799999999999999887 99999999998655432221 11 113344555555
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEeehhchhh----hhhccchHHHHHHHhCCCEEEEeCCCC------CCCCcchHHHHH
Q psy13351 489 LATIINSLALFDILNKSGIISHVMSAISIEK----FLESYIPLNAIKYLEEGKVVIFAGGIG------NPFFTTDTTAAL 558 (837)
Q Consensus 489 ~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~----~~~~~~~~~i~~ll~~g~VPVv~G~~G------~~~~s~D~lAa~ 558 (837)
.... .+..+.++|..+|+++.++++.++.. ....++.+.+..+++.|.|||++|..+ ..++++|++|+.
T Consensus 77 ~~~~-ln~~~~~~l~~~g~~a~~l~~~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~ 155 (252)
T cd04241 77 AMLE-LNSIVVDALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVE 155 (252)
T ss_pred HHHH-HHHHHHHHHHHCCCCeEEEChHHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHH
Confidence 4433 34467788999999999999987522 244567899999999999999987322 124579999999
Q ss_pred HHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH------------hccccchHHHHHHHHhCCCCEEEEE
Q psy13351 559 RAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS------------KKLEIMDSTAFSFCRDQKLPIRVFS 626 (837)
Q Consensus 559 lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~------------~G~~v~~~~Aa~~a~~~gi~v~I~n 626 (837)
+|..|+||+|+++|||||||++|| |++++|++++++++.+ .|+|..++.|+..+.++|++++|++
T Consensus 156 lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~ 232 (252)
T cd04241 156 LAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFN 232 (252)
T ss_pred HHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 999999999999999999999999 8899999998744322 4789999999999999999999999
Q ss_pred ccCcchHHHHHcCCccceEE
Q psy13351 627 IIKSGALKRVIEGKNEGTLV 646 (837)
Q Consensus 627 g~~~~~i~~al~Ge~~GT~I 646 (837)
|..|+.+.+++.|+.+||+|
T Consensus 233 g~~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 233 GDKPENLYRALLGNFIGTRI 252 (252)
T ss_pred CCCHHHHHHHHcCCCCceEC
Confidence 99999999999999999986
|
Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
| >cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=245.18 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=160.4
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCc-chhhhcccccc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI----QNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 511 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 511 (837)
+++.+++++++|..+.+.|+++|||||| |.....+.... ...+...++.+.......+..+++.+|..+|+++++
T Consensus 13 ~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~ 92 (239)
T cd04261 13 SIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQVSIALLAMALNRLGIKAIS 92 (239)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 4578999999999999899999999998 42222222111 112333444443333445777789999999999999
Q ss_pred eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC------CC---cchHHHHHHHHHcCCcEEEEeec
Q psy13351 512 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP------FF---TTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 512 l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~------~~---s~D~lAa~lA~~L~Ad~liilTD 573 (837)
+++.+.... +...+.+.+..+++.|.|||++|+.|.+ .+ ++|++|+.+|.+|+||.+++|||
T Consensus 93 l~~~~~~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~td 172 (239)
T cd04261 93 LTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTD 172 (239)
T ss_pred echhhCCEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeC
Confidence 999875321 1223568899999999999999975532 12 59999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||||++||+.+|+++++++++++|+.+ .|.+++|+.|+.+|.++|+|++|.|+.+|+ .||+|+
T Consensus 173 V~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~----------~gt~i~ 239 (239)
T cd04261 173 VDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE----------PGTLIT 239 (239)
T ss_pred CCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC----------CCcEeC
Confidence 9999999999999999999999998877 789999999999999999999999999872 699984
|
In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and |
| >cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=241.62 Aligned_cols=212 Identities=21% Similarity=0.295 Sum_probs=168.9
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc--ccccCCCcchHHHHHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS--NKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
+++| .|+++++++. .+.++++|++|+++.. |++++||||||+.++.+. ....+++....+..++.+++++
T Consensus 33 ~ViK---iGGSvitdk~----~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln 104 (262)
T cd04255 33 NVVK---IGGQSIIDRG----AEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQN 104 (262)
T ss_pred EEEE---eccceecCCc----HHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 5788 6777776653 3689999999999876 689999999998886544 2233566667788888888888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCC------------CCCCcchHHHHHHHHH
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG------------NPFFTTDTTAALRAAE 562 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G------------~~~~s~D~lAa~lA~~ 562 (837)
+.++...|..+|++++. ..+...+..+|+.|+|||++|+.+ .+++++|++|+++|..
T Consensus 105 ~lv~~~~l~~~g~~~i~-----------~~~~~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~ 173 (262)
T cd04255 105 AEMLATLLAKHGGSKVG-----------HGDLLQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEV 173 (262)
T ss_pred HHHHHHHHHHcCCCccc-----------cccHHHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHH
Confidence 88777778888887631 123346889999999999999742 4677899999999999
Q ss_pred cCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHHh--ccccchHHHHHHHH--hCCCCEEEEEccCcchHHHHHc
Q psy13351 563 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK--KLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIE 638 (837)
Q Consensus 563 L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~~--G~~v~~~~Aa~~a~--~~gi~v~I~ng~~~~~i~~al~ 638 (837)
++||.|+++|||||||++||+.+|++++|++++++++.+. +...++..+...++ +..++++|+||..|+++.+++.
T Consensus 174 l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~ 253 (262)
T cd04255 174 IGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALR 253 (262)
T ss_pred hCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHc
Confidence 9999999999999999999999999999999999887663 22234444444444 2236999999999999999999
Q ss_pred CCccceEEE
Q psy13351 639 GKNEGTLVY 647 (837)
Q Consensus 639 Ge~~GT~I~ 647 (837)
|+.+||+|.
T Consensus 254 g~~~GT~i~ 262 (262)
T cd04255 254 GEHVGTIIR 262 (262)
T ss_pred CCCCceEeC
Confidence 999999983
|
The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
| >cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=240.62 Aligned_cols=201 Identities=25% Similarity=0.333 Sum_probs=161.4
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCc-chhhhcccccc---c-CCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI---Q-NIDRSTADYMGMLATIINSLALFDILNKSGIISHV 511 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 511 (837)
+++.+++++++|+.+.+.|++++||||| |.....+.... . ..+...++.+.++....++.+++.+|..+|+++++
T Consensus 13 ~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~ 92 (239)
T cd04246 13 DIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQISAALLAMALNRLGIKAIS 92 (239)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEE
Confidence 4578999999999998889999999996 43322222211 1 11344455554444556788899999999999999
Q ss_pred eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---C---C---cchHHHHHHHHHcCCcEEEEeec
Q psy13351 512 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F---F---TTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 512 l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~---~---~---s~D~lAa~lA~~L~Ad~liilTD 573 (837)
+++.+.... +...+.+.+..++++|.|||++|+.|.+ . + ++|++|+.+|.+|+||+|+++||
T Consensus 93 l~~~~~~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~td 172 (239)
T cd04246 93 LTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTD 172 (239)
T ss_pred eccccCCEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEEC
Confidence 988875221 2233568899999999999999975421 1 2 48999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||||++||+.+|+++++++++++|+.+ .|.+++|+.|+++|.++|+|++|.|+++|+ .||+|+
T Consensus 173 V~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~----------~gt~i~ 239 (239)
T cd04246 173 VDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN----------PGTLIT 239 (239)
T ss_pred CCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC----------CCcEeC
Confidence 9999999999999999999999998876 789999999999999999999999998872 699984
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati |
| >COG1608 Predicted archaeal kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=233.56 Aligned_cols=223 Identities=22% Similarity=0.282 Sum_probs=170.6
Q ss_pred HHHHhhhhhhhccC--CCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCC-------CcchHHHHHH
Q psy13351 418 VLKAQQLGEALMKG--DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNI-------DRSTADYMGM 488 (837)
Q Consensus 418 v~k~~~~gs~~~~g--~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~-------~~~~~~~~~~ 488 (837)
++| .|+++++. .|..++++.++++|++|+. ..-.++|||||||++.+...... ++ ++.-.....
T Consensus 4 IlK---lGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~-~~~~~~~~~s~~G~~~~~- 76 (252)
T COG1608 4 ILK---LGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEF-GLEGLKNYLSPLGFSLTH- 76 (252)
T ss_pred EEE---ecceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccccCHHHHHh-CccccccccCccchHHHH-
Confidence 566 34445544 5778999999999999985 11136889999997665433321 21 111112222
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEeehhchhhh--hhccc-hHHHHHHHhCCCEEEEeC------CCCCCCCcchHHHHHH
Q psy13351 489 LATIINSLALFDILNKSGIISHVMSAISIEKF--LESYI-PLNAIKYLEEGKVVIFAG------GIGNPFFTTDTTAALR 559 (837)
Q Consensus 489 ~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~--~~~~~-~~~i~~ll~~g~VPVv~G------~~G~~~~s~D~lAa~l 559 (837)
.++..-+..++..|.++|++++...|.++... ...+. .+.+.++++.|+|||++| ..|...+|+|.++.+|
T Consensus 77 ~am~~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~L 156 (252)
T COG1608 77 LAMLELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHL 156 (252)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccCcceeecCCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHH
Confidence 22333455677889999999987667665211 11233 678899999999999999 2345578999999999
Q ss_pred HHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhCCCCEEEEEccCcch
Q psy13351 560 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGA 632 (837)
Q Consensus 560 A~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~ 632 (837)
|..|++|+++|+|||||||+.||...|+++.++++....... +|||.-|+.++....+.+.+++++||.+|++
T Consensus 157 A~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~n 236 (252)
T COG1608 157 AKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPEN 236 (252)
T ss_pred HHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHH
Confidence 999999999999999999999999999999999887643332 7899999999988889999999999999999
Q ss_pred HHHHHcCCccceEEE
Q psy13351 633 LKRVIEGKNEGTLVY 647 (837)
Q Consensus 633 i~~al~Ge~~GT~I~ 647 (837)
|.++|+|+.+||+|.
T Consensus 237 i~~~l~G~~vGT~I~ 251 (252)
T COG1608 237 IYRALRGENVGTRID 251 (252)
T ss_pred HHHHhcCCCCceEec
Confidence 999999999999985
|
|
| >PRK08841 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-25 Score=247.89 Aligned_cols=205 Identities=21% Similarity=0.267 Sum_probs=163.8
Q ss_pred cccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhcccccccC-CCcchHHHHHHHHHHHHHHHHHHHHHHcCCce
Q psy13351 435 NINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQN-IDRSTADYMGMLATIINSLALFDILNKSGIIS 509 (837)
Q Consensus 435 ~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a 509 (837)
.-+.+.+++++++|+.+.+.|+++||||||| +.+.+....... .++.+++.+...+...+..+++.+|+..|+++
T Consensus 13 v~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a 92 (392)
T PRK08841 13 VGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAGEQVSMALLAMTLNKLGYAA 92 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 3456789999999999999999999999984 333332221111 12334444444444457888999999999999
Q ss_pred eEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---CC------cchHHHHHHHHHcCCcEEEEe
Q psy13351 510 HVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---FF------TTDTTAALRAAEIKAEIILKA 571 (837)
Q Consensus 510 ~~l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~---~~------s~D~lAa~lA~~L~Ad~liil 571 (837)
+++++.+.... +...+.+.+..+++.|.|||++||.|.. .+ .+|++|+.+|..|+||.+++|
T Consensus 93 ~~l~~~~~~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~ 172 (392)
T PRK08841 93 RSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIF 172 (392)
T ss_pred EEEehhHcCEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEE
Confidence 99999885321 2224467888999999999999987631 22 389999999999999999999
Q ss_pred eccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 572 TKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 572 TDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|||||||++||+.+|+|+++++++++|+.+ .|++++|+.|+++|.++|+|++|.|++++ ..||+|..
T Consensus 173 TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~----------~~GT~I~~ 242 (392)
T PRK08841 173 TDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEV----------GEGTLIKG 242 (392)
T ss_pred eCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCC----------CCCeEEEe
Confidence 999999999999999999999999998876 79999999999999999999999999875 35999965
Q ss_pred e
Q psy13351 649 I 649 (837)
Q Consensus 649 ~ 649 (837)
+
T Consensus 243 ~ 243 (392)
T PRK08841 243 E 243 (392)
T ss_pred c
Confidence 4
|
|
| >COG0527 LysC Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=245.42 Aligned_cols=322 Identities=17% Similarity=0.207 Sum_probs=219.2
Q ss_pred ccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhcccc--------------------cccCC-------------
Q psy13351 436 INSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISN--------------------KIQNI------------- 478 (837)
Q Consensus 436 i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~--------------------~~~~~------------- 478 (837)
-+.+.+.+.++.+.+..+.|+++|+|++++ +.+..+.. .....
T Consensus 14 a~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~ 93 (447)
T COG0527 14 ADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILDPFIAARLAEVIAEF 93 (447)
T ss_pred CCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhcchhhhhHhhhHhhh
Confidence 456789999999999888899999999984 22222221 00011
Q ss_pred -------------CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHH-HHHHHhC
Q psy13351 479 -------------DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLN-AIKYLEE 535 (837)
Q Consensus 479 -------------~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~-i~~ll~~ 535 (837)
++...|.+...+...++.+|+.+|+..|+++..+++.+.+.. +.....+. +..+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~~ 173 (447)
T COG0527 94 KKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEE 173 (447)
T ss_pred hHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhcC
Confidence 223344444444445899999999999999999999876332 21223445 7788999
Q ss_pred CCEEEEeCCCCCCC---Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hc
Q psy13351 536 GKVVIFAGGIGNPF---FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KK 603 (837)
Q Consensus 536 g~VPVv~G~~G~~~---~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G 603 (837)
|.|||++||+|... ++ +|++|++||.+|+||++.||||||||||+||+..|+|++|+++||+|+.+ .|
T Consensus 174 ~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~G 253 (447)
T COG0527 174 GKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLG 253 (447)
T ss_pred CcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCC
Confidence 99999999988542 22 99999999999999999999999999999999999999999999999988 89
Q ss_pred cccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEeee---hhh------hhh--hhhHHHhHHHHHHHH
Q psy13351 604 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI---MII------SDI--KKNTKQKMLNTIKIL 672 (837)
Q Consensus 604 ~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~---~v~------~~i--~~~~~~~m~~~i~~~ 672 (837)
++++||.|+++|.+++||++|.|.++|+ ..||+|+++.. ..+ +.+ +.-....|....-.+
T Consensus 254 AkVLHprav~pa~~~~Ip~~i~~t~~p~---------~~GTlI~~~~~~~~~~v~gIa~~~~~~~i~v~~~~~~~~~g~~ 324 (447)
T COG0527 254 AKVLHPRAVEPAMRSGIPLRIKNTFNPD---------APGTLITAETESDEPVVKGIALDDNVALITVSGPGMNGMVGFA 324 (447)
T ss_pred chhcCHHHHHHHHhcCCcEEEEecCCCC---------CCceEEecCCcCCCCceEEEEeCCCeEEEEEEccCccccccHH
Confidence 9999999999999999999999999984 47999998721 111 100 111112233333334
Q ss_pred HHHHHhhhcCCCCcccc------ceeEEEecccccc-------------------cceeeeeeccCCceEEEecCCcccH
Q psy13351 673 KENLKKVRTGRANIGML------DNIQVKYHEHLTK-------------------LLKIANITLFNSHTISIQPFEKEMS 727 (837)
Q Consensus 673 ~~~l~~irtgr~~p~~l------d~i~V~~~g~~~~-------------------L~~lA~v~~~~~~~l~i~~~d~~~~ 727 (837)
.+-|.-+.-...++.++ +++...+.+...+ -.++|-|++-+..+- -.+...
T Consensus 325 a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~gm~----~~~gva 400 (447)
T COG0527 325 ARVFGILAEAGINVDLITQSISEVSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLALVSIVGAGMR----SNPGVA 400 (447)
T ss_pred HHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccccc----cCcCHH
Confidence 44455555556666666 2223323332221 113333333332211 136688
Q ss_pred HHHHHHHHhcCCCccceec-CCeeEEeCCCCCHHHHHHHHHHHHHHH
Q psy13351 728 SIIKKAINEANLGLNPTIQ-GNIIYVSIPPLTKERREEIVKLIKNIT 773 (837)
Q Consensus 728 ~~I~kaI~~s~l~~~p~~~-~~~i~v~iP~~T~E~R~~l~k~~k~~~ 773 (837)
..+.+|+.+.++|+--... .-.|.+.|+ ++..++.++.+.+.+
T Consensus 401 a~~f~aL~~~~ini~~issSe~~Is~vV~---~~~~~~av~~LH~~~ 444 (447)
T COG0527 401 ARIFQALAEENINIIMISSSEISISFVVD---EKDAEKAVRALHEAF 444 (447)
T ss_pred HHHHHHHHhCCCcEEEEEcCCceEEEEEc---cHHHHHHHHHHHHHH
Confidence 8999999988888777653 456666664 444555555555443
|
|
| >cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=229.50 Aligned_cols=192 Identities=23% Similarity=0.276 Sum_probs=155.3
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCcchh-hhcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehh
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGGGNI-CRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAI 515 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~ 515 (837)
+++.+++++++|+.+ +.|+++|||||||.. ...+.... .+..+....+..+++.+|..+|+++..+++.
T Consensus 13 ~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~---------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~ 82 (227)
T cd04234 13 SAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA---------LLLSFGERLSARLLAAALRDRGIKARSLDAR 82 (227)
T ss_pred CHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH---------HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHH
Confidence 346899999999999 889999999998522 11111110 2222333346788899999999999999998
Q ss_pred chhhh---------hhccchHHHHHHHhC-CCEEEEeCCCCCC---CC------cchHHHHHHHHHcCCcEEEEeeccCc
Q psy13351 516 SIEKF---------LESYIPLNAIKYLEE-GKVVIFAGGIGNP---FF------TTDTTAALRAAEIKAEIILKATKVDG 576 (837)
Q Consensus 516 ~~~~~---------~~~~~~~~i~~ll~~-g~VPVv~G~~G~~---~~------s~D~lAa~lA~~L~Ad~liilTDVdG 576 (837)
++... ....+.+.+..+++. |.|||++|+.|.+ .+ ++|++|+.+|.+|+||+|+++|||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~G 162 (227)
T cd04234 83 QAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDG 162 (227)
T ss_pred HCCEEcCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCc
Confidence 76322 334467889999999 9999999975532 22 38999999999999999999999999
Q ss_pred cccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 577 IYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 577 Vy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||+||+.+|+++++++++++|+.+ .|++++|+.|+++|.++|+|++|.|+.+|+ ..||+|.
T Consensus 163 vy~~dP~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~---------~~gT~I~ 227 (227)
T cd04234 163 IYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE---------APGTLIT 227 (227)
T ss_pred cCCCCCCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC---------CCCCEeC
Confidence 9999999999999999999998877 688999999999999999999999999874 4599984
|
AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd |
| >cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-25 Score=231.30 Aligned_cols=201 Identities=23% Similarity=0.341 Sum_probs=157.0
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCc-----chhh----hcccc-cccCCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGG-----GNIC----RGISN-KIQNIDRSTADYMGMLATIINSLALFDILNKSG 506 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGG-----G~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~g 506 (837)
+++.+++++++|+.+.+.|++++||||| |... .+... .....++..++.+.+......+.+++.+|..+|
T Consensus 13 ~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~G 92 (244)
T cd04260 13 TKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMSCGEIISAVVLTSTLRAQG 92 (244)
T ss_pred CHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHhCC
Confidence 4566899999999999999988888753 3211 11111 011233444455544344456668999999999
Q ss_pred CceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCC---CC---C---cchHHHHHHHHHcCCcEE
Q psy13351 507 IISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGN---PF---F---TTDTTAALRAAEIKAEII 568 (837)
Q Consensus 507 i~a~~l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~---~~---~---s~D~lAa~lA~~L~Ad~l 568 (837)
++++.+++.+...+ +..++.+.+..+++.|.|||++|+.|. .. + ++|++|+.+|.+|+||++
T Consensus 93 i~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l 172 (244)
T cd04260 93 LKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYV 172 (244)
T ss_pred CCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCEE
Confidence 99999998765321 234567889999999999999997442 11 2 489999999999999999
Q ss_pred EEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceE
Q psy13351 569 LKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL 645 (837)
Q Consensus 569 iilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~ 645 (837)
++||||||||++||+.+|++++|++++++|+.+ .|.+++|+.|++.|.++|+|++|.|+++|+ .||+
T Consensus 173 ~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~~----------~gt~ 242 (244)
T cd04260 173 EIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN----------PGTL 242 (244)
T ss_pred EEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC----------CCCE
Confidence 999999999999999999999999999988877 788999999999999999999999998762 5999
Q ss_pred EE
Q psy13351 646 VY 647 (837)
Q Consensus 646 I~ 647 (837)
|+
T Consensus 243 i~ 244 (244)
T cd04260 243 IT 244 (244)
T ss_pred eC
Confidence 84
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet |
| >PRK06635 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=243.78 Aligned_cols=266 Identities=22% Similarity=0.290 Sum_probs=198.1
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCcc-hhhhccccccc---C-CCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGGG-NICRGISNKIQ---N-IDRSTADYMGMLATIINSLALFDILNKSGIISHV 511 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGGG-~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 511 (837)
+++.+++++++|..+.+.|++++|||||| .....+..... . .+...++.+.+++...++.+++.+|..+|+++++
T Consensus 15 ~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~ 94 (404)
T PRK06635 15 DVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTGEQVSVALLAMALQSLGVKARS 94 (404)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEE
Confidence 46789999999999988899999999974 22221111111 1 1334445444444456788899999999999999
Q ss_pred eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---C---C---cchHHHHHHHHHcCCcEEEEeec
Q psy13351 512 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F---F---TTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 512 l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~---~---~---s~D~lAa~lA~~L~Ad~liilTD 573 (837)
+++.++... +...+.+.+..+++.|.|||++|+.|.+ . + ++|++|+++|..|+||.+++|||
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tD 174 (404)
T PRK06635 95 FTGWQAGIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTD 174 (404)
T ss_pred eChhhCCEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEc
Confidence 998876322 2234678899999999999999976633 1 2 48999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEee
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY 650 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~ 650 (837)
|||||++||+.+|+++++++++++|+.+ .|++++++.|+.++.++|+|++|.|++++ ..||+|.++.
T Consensus 175 V~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~~----------~~gT~i~~~~ 244 (404)
T PRK06635 175 VDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSD----------NPGTLITGEE 244 (404)
T ss_pred CCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCCC----------CCCCEEeeCC
Confidence 9999999999999999999999998877 78999999999999999999999999864 3599997642
Q ss_pred ehhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHH
Q psy13351 651 IMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSII 730 (837)
Q Consensus 651 ~~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I 730 (837)
. ..| ....+..|. -..+++.|++.+ -+-.+..+..|
T Consensus 245 ~-----------~~~-------------------~~~~i~~I~--------~~~~v~~Isv~g------~~~~~g~l~~i 280 (404)
T PRK06635 245 E-----------EIM-------------------EQPVVTGIA--------FDKDEAKVTVVG------VPDKPGIAAQI 280 (404)
T ss_pred c-----------ccc-------------------ccCceEEEE--------ecCCeEEEEECC------CCCCccHHHHH
Confidence 1 000 001111221 245677777755 13457788999
Q ss_pred HHHHHhcCCCccceecC------CeeEEeCCC
Q psy13351 731 KKAINEANLGLNPTIQG------NIIYVSIPP 756 (837)
Q Consensus 731 ~kaI~~s~l~~~p~~~~------~~i~v~iP~ 756 (837)
-+++.++++++.-...+ ..+.+.+|.
T Consensus 281 ~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~ 312 (404)
T PRK06635 281 FGALAEANINVDMIVQNVSEDGKTDITFTVPR 312 (404)
T ss_pred HHHHHHcCCeEEEEEecCCCCCceeEEEEEcH
Confidence 99999888877655332 467777754
|
|
| >cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-25 Score=234.78 Aligned_cols=223 Identities=22% Similarity=0.261 Sum_probs=167.1
Q ss_pred HHHHHhhhhhhhccCC---CccccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhcccccccCCCcchHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGD---AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGML 489 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~---~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~~ 489 (837)
+++++ +|.++...+ ....+.+.++..+++|+++.+.|++++||||+| +.+++........++.+++.+.+.
T Consensus 2 ivial--gGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~ 79 (308)
T cd04235 2 IVVAL--GGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAM 79 (308)
T ss_pred EEEEe--cHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcch
Confidence 45565 677776544 356888899999999999999999999999998 777765544323345556666666
Q ss_pred HHHHHHHHHHHH----HHHcCCceeEeehhchh-----------------hh----------------------------
Q psy13351 490 ATIINSLALFDI----LNKSGIISHVMSAISIE-----------------KF---------------------------- 520 (837)
Q Consensus 490 ~~~~~~~ll~~~----L~~~gi~a~~l~~~~~~-----------------~~---------------------------- 520 (837)
.+|+.+++|+.+ |...|++....+..+.. .+
T Consensus 80 ~~G~ig~~~~~al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrv 159 (308)
T cd04235 80 SQGMIGYMLQQALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV 159 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceee
Confidence 666666655444 67777766444332210 00
Q ss_pred ------hhccchHHHHHHHhCCCEEEEeCCCCCCCCc-------------chHHHHHHHHHcCCcEEEEeeccCccccCC
Q psy13351 521 ------LESYIPLNAIKYLEEGKVVIFAGGIGNPFFT-------------TDTTAALRAAEIKAEIILKATKVDGIYNSD 581 (837)
Q Consensus 521 ------~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s-------------~D~lAa~lA~~L~Ad~liilTDVdGVy~~d 581 (837)
..-++.+.+..+++.|+|||++|+.|+|.++ +|++|+++|..|+||.|+++|||||||+++
T Consensus 160 V~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~ 239 (308)
T cd04235 160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF 239 (308)
T ss_pred eCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCC
Confidence 0112356788899999999999988877543 499999999999999999999999999976
Q ss_pred CCCCCCceeccccCHHHHHH--------hccccchHHHHH-HHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 582 PNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFS-FCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 582 P~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~-~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
| .|++++|++++++++.+ .|+|.+|+.|+. ++.+.+.+++|++ ++++.++|.|+ .||+|.
T Consensus 240 ~--~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGK-AGTVIV 308 (308)
T ss_pred C--CCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence 5 48999999999988765 478999998774 5555567788865 67799999998 799983
|
Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK). |
| >TIGR00746 arcC carbamate kinase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=234.37 Aligned_cols=224 Identities=21% Similarity=0.241 Sum_probs=167.5
Q ss_pred HHHHHHhhhhhhhccCC-Cc--cccccchhhhhhhhHHhhhcCceEEEEeCcchh----hhcccccccCCCcchHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGD-AY--NINSSIIKNIISEISEIVSCGIELAIVIGGGNI----CRGISNKIQNIDRSTADYMGM 488 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~-~~--~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~----~~~~~~~~~~~~~~~~~~~~~ 488 (837)
|+|+|+ +|+++...+ .. .++...++.+|++|++|.+.|++++||||||.. ..+........++.+++.+.+
T Consensus 2 riVikl--GgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~~~~~~~p~~~~~A 79 (310)
T TIGR00746 2 RVVVAL--GGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAADSEVPAMPLDVLGA 79 (310)
T ss_pred eEEEEE--CHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhccccccccCCCCcchHHHH
Confidence 567785 566665432 32 466889999999999999999999999999733 333222222344556788888
Q ss_pred HHHHHHHHHHHHHHH----HcCCce--------eEeehhc--hhhhh---------------------------------
Q psy13351 489 LATIINSLALFDILN----KSGIIS--------HVMSAIS--IEKFL--------------------------------- 521 (837)
Q Consensus 489 ~~~~~~~~ll~~~L~----~~gi~a--------~~l~~~~--~~~~~--------------------------------- 521 (837)
..+++.+++++.+|. .+|++. +.++..| +....
T Consensus 80 ~~qg~lg~~~~~~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rr 159 (310)
T TIGR00746 80 MSQGMIGYMLQQALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRR 159 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceE
Confidence 888888888877766 777433 3333333 21110
Q ss_pred --------hccchHHHHHHHhCCCEEEEeCCCCCCC-------------CcchHHHHHHHHHcCCcEEEEeeccCccccC
Q psy13351 522 --------ESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIYNS 580 (837)
Q Consensus 522 --------~~~~~~~i~~ll~~g~VPVv~G~~G~~~-------------~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~ 580 (837)
..++.+.+..+|+.|.++|.+|+.|.|. +++|++|+++|..|+||+|+++|||||||++
T Consensus 160 vv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~ 239 (310)
T TIGR00746 160 VVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN 239 (310)
T ss_pred eecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC
Confidence 1134568889999999777776666553 2699999999999999999999999999997
Q ss_pred CCCCCCCceeccccCHHHHHH--------hccccchHHHH-HHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 581 DPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 581 dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa-~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++ .|++++|++++.+|+.. .|+|.+|+.|| +++.+.+.+++|++ ++++.++|.|+ .||+|.
T Consensus 240 ~~--~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 240 YG--KPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT 309 (310)
T ss_pred CC--CCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence 43 58899999999988765 38899999888 66666778899986 67899999999 999996
|
The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff. |
| >PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=231.96 Aligned_cols=200 Identities=17% Similarity=0.228 Sum_probs=161.2
Q ss_pred hhhhhhHHhhhcCceEEEEeCcchhhhcccccc---------------cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy13351 443 NIISEISEIVSCGIELAIVIGGGNICRGISNKI---------------QNIDRSTADYMGMLATIINSLALFDILNKSGI 507 (837)
Q Consensus 443 ~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi 507 (837)
+++.+|+.+.+.|.++|||||||.......... +-.++.+++.+.+... ..+..+.+.|.++|+
T Consensus 16 ~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~~-~ln~~lv~~L~~~Gv 94 (268)
T PRK14058 16 DALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAMA-LINKQLVERLQSLGV 94 (268)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHHH-HHHHHHHHHHHhCCC
Confidence 568999999889999999999985544322211 1125556666665555 555556679999999
Q ss_pred ceeEeehhchhhh--------------------------hhccchHHHHHHHhCCCEEEEeCCC----CCC-CCcchHHH
Q psy13351 508 ISHVMSAISIEKF--------------------------LESYIPLNAIKYLEEGKVVIFAGGI----GNP-FFTTDTTA 556 (837)
Q Consensus 508 ~a~~l~~~~~~~~--------------------------~~~~~~~~i~~ll~~g~VPVv~G~~----G~~-~~s~D~lA 556 (837)
+++++++.+.+.+ +..++.+.+..++++|.|||++|.. |.. ++++|++|
T Consensus 95 ~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A 174 (268)
T PRK14058 95 NAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAA 174 (268)
T ss_pred CccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHH
Confidence 9999999875221 2346788999999999999999832 122 35799999
Q ss_pred HHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-----hccccchHHHHHHHHhCCC-CEEEEEccCc
Q psy13351 557 ALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFSFCRDQKL-PIRVFSIIKS 630 (837)
Q Consensus 557 a~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-----~G~~v~~~~Aa~~a~~~gi-~v~I~ng~~~ 630 (837)
+.+|.+|+||+|+|+|||||||++||+ ++++|++++.+|+.+ .|+|..|+.|+..+.++|+ +++|++|..|
T Consensus 175 ~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~ 251 (268)
T PRK14058 175 AAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVD 251 (268)
T ss_pred HHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 999999999999999999999999884 478999999887765 6999999999999999999 7999999999
Q ss_pred chHHHHHcCCccceEEEE
Q psy13351 631 GALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 631 ~~i~~al~Ge~~GT~I~~ 648 (837)
+++.++|.|+ ||+|.+
T Consensus 252 ~~l~~~l~G~--GT~I~~ 267 (268)
T PRK14058 252 DPISAALAGE--GTVIVN 267 (268)
T ss_pred chHHHHhCCC--ceEEec
Confidence 9999999886 999975
|
|
| >COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-24 Score=222.09 Aligned_cols=214 Identities=19% Similarity=0.184 Sum_probs=177.1
Q ss_pred CCCccccccchhhhhhhhHHhhhcCceEEEEeCcchh---hhccccccc-------CCCcchHHHHHHHHHHHHHHHHHH
Q psy13351 431 GDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNI---CRGISNKIQ-------NIDRSTADYMGMLATIINSLALFD 500 (837)
Q Consensus 431 g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ll~~ 500 (837)
|+....+++..++++++|+.|+..|.++|||||||.. .+....... -.++.+++...++..+..+..+++
T Consensus 10 GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~G~vNk~iva 89 (265)
T COG0548 10 GGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLGGTVNKEIVA 89 (265)
T ss_pred CceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566778999999999999999999999999933 332223222 237888999999999898999999
Q ss_pred HHHHcCCceeEeehhchhhh------------------hhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHH
Q psy13351 501 ILNKSGIISHVMSAISIEKF------------------LESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAA 557 (837)
Q Consensus 501 ~L~~~gi~a~~l~~~~~~~~------------------~~~~~~~~i~~ll~~g~VPVv~G~----~G~~-~~s~D~lAa 557 (837)
.|+.+|..++++++.|.+.+ +..++++.+..++++|+|||+++. .|.. ++++|++|+
T Consensus 90 ~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~~~NvnaD~~A~ 169 (265)
T COG0548 90 RLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGETLNVNADTAAG 169 (265)
T ss_pred HHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCcEEeeCHHHHHH
Confidence 99999999999999885221 456789999999999999999982 2222 467999999
Q ss_pred HHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhCCC-CEEEEEccC
Q psy13351 558 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKL-PIRVFSIIK 629 (837)
Q Consensus 558 ~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~gi-~v~I~ng~~ 629 (837)
.+|.+|+|++|+++|||+|||+++|+ | .++++++.+++.+ .|+|++++.+|..|.+.|+ +++|+||..
T Consensus 170 ~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~ 245 (265)
T COG0548 170 ALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRV 245 (265)
T ss_pred HHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCC
Confidence 99999999999999999999998775 3 6888888877765 5899999999999999999 699999999
Q ss_pred cchHHH-HHcCCccceEEEE
Q psy13351 630 SGALKR-VIEGKNEGTLVYE 648 (837)
Q Consensus 630 ~~~i~~-al~Ge~~GT~I~~ 648 (837)
|+.+.. ++.+..+||.|.+
T Consensus 246 ~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 246 PHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred cchHHHHHhcCCCcceEecC
Confidence 999665 6778889999863
|
|
| >KOG1154|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-25 Score=217.96 Aligned_cols=233 Identities=19% Similarity=0.198 Sum_probs=175.2
Q ss_pred HHHHHHHHHhhhhhhhccCC-CccccccchhhhhhhhHHhhhcCceEEEEeCcc-hhhh---ccccccc-----C-CCcc
Q psy13351 413 EYSLAVLKAQQLGEALMKGD-AYNINSSIIKNIISEISEIVSCGIELAIVIGGG-NICR---GISNKIQ-----N-IDRS 481 (837)
Q Consensus 413 ek~~~v~k~~~~gs~~~~g~-~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG-~~~~---~~~~~~~-----~-~~~~ 481 (837)
...++|+| .||++.+++ .......++..+++++.+|+..|+++++|+||| ...+ .+..... . -++.
T Consensus 8 ka~rIVVK---LGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~~ 84 (285)
T KOG1154|consen 8 KAYRIVVK---LGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQS 84 (285)
T ss_pred cceEEEEE---ecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhCCcc
Confidence 34578899 677888664 456888999999999999999999999999996 2221 1111110 0 1334
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHcCCce--eEeehhchhhhhhccc-hHHHHHHHhCCCEEEEeCCCCC-----CCC
Q psy13351 482 TADYMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIGN-----PFF 550 (837)
Q Consensus 482 ~~~~~~~~~~~~~~~ll~~~---L~~~gi~a--~~l~~~~~~~~~~~~~-~~~i~~ll~~g~VPVv~G~~G~-----~~~ 550 (837)
.+...+++++.+++.+|+-| |..+|+.. +.++-.|+..-....+ ...+.++|..|.|||+...... ++-
T Consensus 85 ~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iAQvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~ 164 (285)
T KOG1154|consen 85 ELAEKRACAAVGQSGLMALYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFG 164 (285)
T ss_pred chhhHHHHHHhCcchHHHHHHHHHHHhccchheeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccC
Confidence 56777788888888888877 88888875 4444444432211112 3478899999999999642211 111
Q ss_pred ---cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHH-H----------hccccchHHHHHHHH
Q psy13351 551 ---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-S----------KKLEIMDSTAFSFCR 616 (837)
Q Consensus 551 ---s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~-~----------~G~~v~~~~Aa~~a~ 616 (837)
.||++||.+|.+++||+|+++|||||+||.+|.. ..+++++..+..+-. . +|||-.|+.||..|.
T Consensus 165 D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~-~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~ 243 (285)
T KOG1154|consen 165 DSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDA-DPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNAL 243 (285)
T ss_pred CCCcccHHHHHHHHHhccCEEEEEecccccccCCCCC-CcceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHHHh
Confidence 1999999999999999999999999999966653 457788777654332 1 689999999999999
Q ss_pred hCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 617 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 617 ~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
..|++++|+||..|++|.+++.|..+||.|...
T Consensus 244 ~~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~~ 276 (285)
T KOG1154|consen 244 NAGVSVIITNGDAPENITDIVEGKKVGTFFEQL 276 (285)
T ss_pred cCCceEEEeCCCChHHHHHHHhhhhhhhhhhhc
Confidence 999999999999999999999999999999754
|
|
| >TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-24 Score=240.98 Aligned_cols=203 Identities=22% Similarity=0.255 Sum_probs=162.5
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCcch-hhhcccccc-----cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGGGN-ICRGISNKI-----QNIDRSTADYMGMLATIINSLALFDILNKSGIISH 510 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGGG~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 510 (837)
+++.+++++++|+.+.+.|++++||||||. ....+.... ...+....+.+..++...++.+++.+|..+|++++
T Consensus 14 ~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~ 93 (401)
T TIGR00656 14 SGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKAI 93 (401)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceE
Confidence 457899999999999889999999999962 211111111 11233334555555555678999999999999999
Q ss_pred Eeehhchhhh---------hhccch-HHHHHHHhCCCEEEEeCCCCCC--C-C------cchHHHHHHHHHcCCcEEEEe
Q psy13351 511 VMSAISIEKF---------LESYIP-LNAIKYLEEGKVVIFAGGIGNP--F-F------TTDTTAALRAAEIKAEIILKA 571 (837)
Q Consensus 511 ~l~~~~~~~~---------~~~~~~-~~i~~ll~~g~VPVv~G~~G~~--~-~------s~D~lAa~lA~~L~Ad~liil 571 (837)
.+++.+.... +...+. +.+..+++.|.|||++|+.|.. + . .+|++|+.+|..|+||.+++|
T Consensus 94 ~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~ 173 (401)
T TIGR00656 94 WLDGGEAGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIY 173 (401)
T ss_pred EeccccceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 9987765211 222334 7899999999999999976521 2 1 279999999999999999999
Q ss_pred eccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 572 TKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 572 TDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|||||||++||+.+|+++++++++++|+.+ .|++++|+.|+.+|.++++|++|.|+++|+ .||+|.+
T Consensus 174 tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~----------~gT~I~~ 243 (401)
T TIGR00656 174 TDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE----------EGTLITN 243 (401)
T ss_pred ECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC----------CCeEEEe
Confidence 999999999999999999999999999987 799999999999999999999999999873 4999975
Q ss_pred e
Q psy13351 649 I 649 (837)
Q Consensus 649 ~ 649 (837)
.
T Consensus 244 ~ 244 (401)
T TIGR00656 244 S 244 (401)
T ss_pred C
Confidence 4
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. |
| >TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-24 Score=255.40 Aligned_cols=235 Identities=18% Similarity=0.186 Sum_probs=179.0
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCc-chhhhccccccc----C----CCcchHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQ----N----IDRSTAD 484 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~----~----~~~~~~~ 484 (837)
.+++|+| .||++++.+.+.++.+.+.+++++|+++++.|+++|||+|| |...+....... + -.+....
T Consensus 7 ~~~iViK---iGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~ 83 (715)
T TIGR01092 7 VKRIVVK---VGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPEL 83 (715)
T ss_pred CCEEEEE---eCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchH
Confidence 4678999 67777777677899999999999999999999999997776 333333222211 0 1234455
Q ss_pred HHHHHHHHHHHHHHHHH---HHHcCCcee--Eeehhchhhh-hhccchHHHHHHHhCCCEEEEeCCCCCC----------
Q psy13351 485 YMGMLATIINSLALFDI---LNKSGIISH--VMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIGNP---------- 548 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~---L~~~gi~a~--~l~~~~~~~~-~~~~~~~~i~~ll~~g~VPVv~G~~G~~---------- 548 (837)
..+++++.+++.++..| |..+++.+. .++..++... ........+..+|+.|.|||+++.....
T Consensus 84 ~~qa~aa~gq~~L~~~y~~~f~~~~i~~aQ~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~ 163 (715)
T TIGR01092 84 DGKACAAVGQSGLMALYETMFTQLDITAAQILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQ 163 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeEEEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCccccccccccccc
Confidence 67777777777777665 777787763 2333332221 1122356888999999999998622111
Q ss_pred --CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHH-H----------hccccchHHHHHHH
Q psy13351 549 --FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-S----------KKLEIMDSTAFSFC 615 (837)
Q Consensus 549 --~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~-~----------~G~~v~~~~Aa~~a 615 (837)
++++|++|+++|.+++||+|+++|||||||++||+ +|++++|++++..+.. . +|||..|+.|+..|
T Consensus 164 g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a 242 (715)
T TIGR01092 164 GIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWA 242 (715)
T ss_pred ceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHH
Confidence 35699999999999999999999999999999996 6999999988754322 1 58899999999999
Q ss_pred HhCCCCEEEEEccCcchHHHHHcCCccceEEEEeeeh
Q psy13351 616 RDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIM 652 (837)
Q Consensus 616 ~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~~ 652 (837)
.++|++++|+||..|+.|.+++.|+..||+|.++.+|
T Consensus 243 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~~~~ 279 (715)
T TIGR01092 243 AYGGTPVIIASGTAPKNITKVVEGKKVGTLFHEDAHL 279 (715)
T ss_pred HHCCCeEEEeCCCCcchHHHHhcCCCCceEecccchh
Confidence 9999999999999999999999999999999887544
|
This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region. |
| >PRK07431 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-23 Score=242.78 Aligned_cols=325 Identities=18% Similarity=0.206 Sum_probs=214.3
Q ss_pred ccccchhhhhhhhHHhhhcCceEEEEeCc-chhhhcccccccCC-CcchHHHHHHHHH-HH--HHHHHHHHHHHcCCcee
Q psy13351 436 INSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNI-DRSTADYMGMLAT-II--NSLALFDILNKSGIISH 510 (837)
Q Consensus 436 i~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~ll~~~L~~~gi~a~ 510 (837)
.+++.++++++.|+.+.+.|+++|||||| |.....+......+ ++...+...++.+ |+ +..+++.+|..+|++++
T Consensus 14 ~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~ 93 (587)
T PRK07431 14 GSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEISSNPPRREMDMLLSTGEQVSIALLSMALHELGQPAI 93 (587)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeE
Confidence 57789999999999998899999999996 54433322221111 2223333444444 33 56677788999999999
Q ss_pred Eeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCCC-----Cc------chHHHHHHHHHcCCcEEEE
Q psy13351 511 VMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-----FT------TDTTAALRAAEIKAEIILK 570 (837)
Q Consensus 511 ~l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~~-----~s------~D~lAa~lA~~L~Ad~lii 570 (837)
++++.++... +...+.+.+..+++.|.|||++|+.|... .+ +|++|+++|..|+||++++
T Consensus 94 ~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i 173 (587)
T PRK07431 94 SLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEI 173 (587)
T ss_pred EechhHcCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEE
Confidence 9999876322 22335678999999999999999766421 22 7999999999999999999
Q ss_pred eeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 571 ATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 571 lTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
||||||||++||+.+|++++|++++++|+.+ .|.+++|+.|+++|.++|+|++|.|++. +..||+|.
T Consensus 174 ~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~----------~~~GT~i~ 243 (587)
T PRK07431 174 YTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS----------DAPGTLVT 243 (587)
T ss_pred EeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCCC----------CCCCeEEE
Confidence 9999999999999999999999999999877 6889999999999999999999999873 23699998
Q ss_pred Eeeehh-----------------hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccc---------eeEEEeccccc
Q psy13351 648 EIYIMI-----------------ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLD---------NIQVKYHEHLT 701 (837)
Q Consensus 648 ~~~~~v-----------------~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld---------~i~V~~~g~~~ 701 (837)
+..... .+++..-.-..|......+.+=|..+.....++.++. ++.+-......
T Consensus 244 ~~~~~~~~~~~~~~~~~i~gi~~~~~~a~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~ 323 (587)
T PRK07431 244 SPPPRPRSLGGLELGKPVDGVELDEDQAKVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL 323 (587)
T ss_pred eCCcccccccchhcccccceEEEecCceEEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH
Confidence 652110 0110000001222222333333444444566666662 33333322211
Q ss_pred c-----cc----ee--eeeeccCC-ceEEEecC----CcccHHHHHHHHHhcCCCccce-ecCCeeEEeCCCCCHHHHHH
Q psy13351 702 K-----LL----KI--ANITLFNS-HTISIQPF----EKEMSSIIKKAINEANLGLNPT-IQGNIIYVSIPPLTKERREE 764 (837)
Q Consensus 702 ~-----L~----~l--A~v~~~~~-~~l~i~~~----d~~~~~~I~kaI~~s~l~~~p~-~~~~~i~v~iP~~T~E~R~~ 764 (837)
+ |+ ++ .+|++.+. ..+.|.-. .+.....+..|+.+.+.++--. ..+..|.+.+|. +..++
T Consensus 324 ~~~~~~l~~l~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~---~d~~~ 400 (587)
T PRK07431 324 KKAEAVAEAIAPALGGAEVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDA---EDGDK 400 (587)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEcH---HHHHH
Confidence 1 11 11 23444332 22222221 3677888889998776665433 345677777764 44556
Q ss_pred HHHHHHHHH
Q psy13351 765 IVKLIKNIT 773 (837)
Q Consensus 765 l~k~~k~~~ 773 (837)
.++.+++.+
T Consensus 401 av~~Lh~~f 409 (587)
T PRK07431 401 ALRAVCEAF 409 (587)
T ss_pred HHHHHHHHh
Confidence 666666555
|
|
| >PRK12353 putative amino acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=226.39 Aligned_cols=226 Identities=22% Similarity=0.216 Sum_probs=158.1
Q ss_pred HHHHHHHhhhhhhhccC-CCccccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhccccccc---CCCcchHHHH
Q psy13351 415 SLAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ---NIDRSTADYM 486 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g-~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~---~~~~~~~~~~ 486 (837)
+++|+|+ +|+++..+ ++..++.+.+.+++++|+.+.+.|+++||||||| +..++...... ..+....+..
T Consensus 3 ~~iVIkl--GG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (314)
T PRK12353 3 KKIVVAL--GGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKNKVPAMPLDVC 80 (314)
T ss_pred cEEEEEE--CHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCCCCCCchhHHH
Confidence 4578884 44444432 2345899999999999999999999999999995 44333222210 1112223333
Q ss_pred HHHHHHHHHH----HHHHHHHHcCCce--------eEeehhchh--h-------h------------------------h
Q psy13351 487 GMLATIINSL----ALFDILNKSGIIS--------HVMSAISIE--K-------F------------------------L 521 (837)
Q Consensus 487 ~~~~~~~~~~----ll~~~L~~~gi~a--------~~l~~~~~~--~-------~------------------------~ 521 (837)
.+...++.+. .+...|..+|+.. +.+++.+.. . + .
T Consensus 81 ~a~~qg~l~~~l~~~~~~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (314)
T PRK12353 81 GAMSQGYIGYHLQNALRNELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRGY 160 (314)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCcee
Confidence 3334443333 3344477766522 111222100 0 0 0
Q ss_pred ----------hccchHHHHHHHhCCCEEEEeCCCCCCC-------------CcchHHHHHHHHHcCCcEEEEeeccCccc
Q psy13351 522 ----------ESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIY 578 (837)
Q Consensus 522 ----------~~~~~~~i~~ll~~g~VPVv~G~~G~~~-------------~s~D~lAa~lA~~L~Ad~liilTDVdGVy 578 (837)
..++.+.+..+|+.|.|||++|+.|.|. +++|++|+++|.+|+||+|+++|||||||
T Consensus 161 r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy 240 (314)
T PRK12353 161 RRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVY 240 (314)
T ss_pred EeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 0134688999999999999998765553 34699999999999999999999999999
Q ss_pred cCCCCCCCCceeccccCHHHHHH--------hccccchHHHHHHHH--hCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 579 NSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 579 ~~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~~a~--~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
++|| .|++++|++++++++.+ .|+|.+|+.|+..+. +.|++++|++ ++++.++++|+ .||+|.|
T Consensus 241 ~~~~--~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 241 INFG--KPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIVK 314 (314)
T ss_pred CCCC--CCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEecC
Confidence 9766 38999999999877654 478999999886655 7799999996 67889999998 8999964
|
|
| >PRK08210 aspartate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=237.21 Aligned_cols=202 Identities=24% Similarity=0.376 Sum_probs=158.2
Q ss_pred ccchhhhhhhhHHhhhcCceEEEEeCc-ch----hh----hccccc-ccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy13351 438 SSIIKNIISEISEIVSCGIELAIVIGG-GN----IC----RGISNK-IQNIDRSTADYMGMLATIINSLALFDILNKSGI 507 (837)
Q Consensus 438 ~~~i~~la~~I~~l~~~G~~vVIVhGG-G~----~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi 507 (837)
++.+.+++++|+.+.+.|++++||||| |. .. .+.... ....++..++.+..++....+.+++.+|..+|+
T Consensus 16 ~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi 95 (403)
T PRK08210 16 EERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDLLMSCGEIISSVVFSNMLNENGI 95 (403)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHHHHhHhHHHHHHHHHHHHHhCCC
Confidence 355889999999999999999988865 21 11 111110 112234445554444444467789999999999
Q ss_pred ceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---C---C---cchHHHHHHHHHcCCcEEE
Q psy13351 508 ISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F---F---TTDTTAALRAAEIKAEIIL 569 (837)
Q Consensus 508 ~a~~l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~---~---~---s~D~lAa~lA~~L~Ad~li 569 (837)
+++++++.+.... +...+.+.+..+++.|.|||++|+.|.. . + ++|++|+.+|.+|+||+++
T Consensus 96 ~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~ 175 (403)
T PRK08210 96 KAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVD 175 (403)
T ss_pred CeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEE
Confidence 9999998765321 2334678899999999999999975422 1 2 4899999999999999999
Q ss_pred EeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEE
Q psy13351 570 KATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646 (837)
Q Consensus 570 ilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I 646 (837)
+||||||||++||+.+|++++|++++++|+.+ .|.+++|+.|+++|.++++|++|.|++++ ..||+|
T Consensus 176 i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~----------~~gT~I 245 (403)
T PRK08210 176 IYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSD----------SPGTLI 245 (403)
T ss_pred EEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEEEecCCC----------cCCcEE
Confidence 99999999999999999999999999998877 79999999999999999999999999864 249999
Q ss_pred EEe
Q psy13351 647 YEI 649 (837)
Q Consensus 647 ~~~ 649 (837)
.++
T Consensus 246 ~~~ 248 (403)
T PRK08210 246 TSL 248 (403)
T ss_pred Eec
Confidence 764
|
|
| >CHL00202 argB acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-23 Score=221.96 Aligned_cols=207 Identities=17% Similarity=0.155 Sum_probs=166.7
Q ss_pred ccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---c----cC---CCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy13351 438 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---I----QN---IDRSTADYMGMLATIINSLALFDILNKSGI 507 (837)
Q Consensus 438 ~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~----~~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi 507 (837)
+...+.++++|+.|...|.++|||||||+........ . .+ .++..++...++.++..+..+.+.|..+|+
T Consensus 38 ~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~rvT~~~~l~~~~~~l~g~ln~~lv~~L~~~Gv 117 (284)
T CHL00202 38 LILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGKVNKDLVGSINANGG 117 (284)
T ss_pred cchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeECCcccCCHHHHHHHHHHHhhHHHHHHHHHHHhCCC
Confidence 3456689999999999999999999999554332211 1 12 255667788888888888889999999999
Q ss_pred ceeEeehhchhhh---------------hhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHHHHHcCCcE
Q psy13351 508 ISHVMSAISIEKF---------------LESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAEI 567 (837)
Q Consensus 508 ~a~~l~~~~~~~~---------------~~~~~~~~i~~ll~~g~VPVv~G~----~G~~-~~s~D~lAa~lA~~L~Ad~ 567 (837)
+++++++.+.+.+ +..++.+.+..+++.|.|||++|. .|.. ++++|++|+.+|..|+||+
T Consensus 118 ~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~ 197 (284)
T CHL00202 118 KAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEK 197 (284)
T ss_pred CeeeeeeccCCEEEEEeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCE
Confidence 9999999875311 345678999999999999999983 1222 4679999999999999999
Q ss_pred EEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhCCCC-EEEEEccCcch-HHHHHc
Q psy13351 568 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGA-LKRVIE 638 (837)
Q Consensus 568 liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~gi~-v~I~ng~~~~~-i~~al~ 638 (837)
|+|+|||||||+++. +| .++|++++++|+.+ .|+|..|+.|+..+.++|++ ++|++|..|+. +.+++.
T Consensus 198 li~lTdv~Gv~~~~~--d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~ 274 (284)
T CHL00202 198 LILLTDTPGILADIN--DP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILT 274 (284)
T ss_pred EEEEeCChhhcCCCC--CC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhc
Confidence 999999999998532 12 37899999877655 58999999999999999986 78999999987 578999
Q ss_pred CCccceEEE
Q psy13351 639 GKNEGTLVY 647 (837)
Q Consensus 639 Ge~~GT~I~ 647 (837)
++..||+|.
T Consensus 275 ~~g~GT~i~ 283 (284)
T CHL00202 275 EKGIGSMLV 283 (284)
T ss_pred CCCCceEEe
Confidence 999999985
|
|
| >PLN02512 acetylglutamate kinase | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-23 Score=222.35 Aligned_cols=207 Identities=17% Similarity=0.181 Sum_probs=165.7
Q ss_pred cchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---cc----cC---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy13351 439 SIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KI----QN---IDRSTADYMGMLATIINSLALFDILNKSGII 508 (837)
Q Consensus 439 ~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~----~~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~ 508 (837)
+....++++|+.+...|.++|||||||.....+.. .. .+ .++..++.+.++..+..+..+.+.|.++|++
T Consensus 63 ~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~L~~~Gv~ 142 (309)
T PLN02512 63 ELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVSLINKAGGT 142 (309)
T ss_pred hHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHHHHHcCCC
Confidence 35567888888888889999999999965443222 11 11 2455566777777777888899999999999
Q ss_pred eeEeehhchh----------------hhhhccchHHHHHHHhCCCEEEEeCCC----CC-CCCcchHHHHHHHHHcCCcE
Q psy13351 509 SHVMSAISIE----------------KFLESYIPLNAIKYLEEGKVVIFAGGI----GN-PFFTTDTTAALRAAEIKAEI 567 (837)
Q Consensus 509 a~~l~~~~~~----------------~~~~~~~~~~i~~ll~~g~VPVv~G~~----G~-~~~s~D~lAa~lA~~L~Ad~ 567 (837)
++++++.+.+ ..+..++.+.+..+++.|.|||++|.. |. .++++|++|+++|..|+||+
T Consensus 143 av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~ 222 (309)
T PLN02512 143 AVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEK 222 (309)
T ss_pred eEEeehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCE
Confidence 9999998742 013456789999999999999999831 11 13579999999999999999
Q ss_pred EEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhCCCC-EEEEEccCcchHH-HHHc
Q psy13351 568 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGALK-RVIE 638 (837)
Q Consensus 568 liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~gi~-v~I~ng~~~~~i~-~al~ 638 (837)
|+|+|||||||+++| +++++|++++++|+.+ .|+|..|+.++..+.+.|++ ++|++|..|+.+. +++.
T Consensus 223 li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~ 299 (309)
T PLN02512 223 LILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILT 299 (309)
T ss_pred EEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhc
Confidence 999999999999864 3478999999887755 68999999999888889995 8999999998865 6788
Q ss_pred CCccceEEEE
Q psy13351 639 GKNEGTLVYE 648 (837)
Q Consensus 639 Ge~~GT~I~~ 648 (837)
++..||+|.+
T Consensus 300 ~~~~GT~I~~ 309 (309)
T PLN02512 300 DEGAGTMITG 309 (309)
T ss_pred CCCCeeEEeC
Confidence 8889999974
|
|
| >PLN02418 delta-1-pyrroline-5-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-23 Score=246.31 Aligned_cols=233 Identities=18% Similarity=0.215 Sum_probs=174.3
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCc----chhhhcccccccC----C--CcchH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG----GNICRGISNKIQN----I--DRSTA 483 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGG----G~~~~~~~~~~~~----~--~~~~~ 483 (837)
.+++|+| .|++.+.+..+.++...+.+++++|+++++.|+++|||+|| |....++...... + +....
T Consensus 15 ~~~iViK---~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~~~~~~~~~~~~~~~ 91 (718)
T PLN02418 15 VKRVVIK---VGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLVNSSFADLQKPQMEL 91 (718)
T ss_pred CCEEEEE---eCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhhhcccccCCCCcchH
Confidence 4578899 56666766667899999999999999999999999999998 4444433322111 1 22233
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHcCCceeE--eehhchhhh-hhccchHHHHHHHhCCCEEEEeCCCCCC---------
Q psy13351 484 DYMGMLATIINSL---ALFDILNKSGIISHV--MSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIGNP--------- 548 (837)
Q Consensus 484 ~~~~~~~~~~~~~---ll~~~L~~~gi~a~~--l~~~~~~~~-~~~~~~~~i~~ll~~g~VPVv~G~~G~~--------- 548 (837)
+. +++++.++.. ++..+|..+|+++.. ++..++... ........+..+|+.|.|||+++.....
T Consensus 92 ~~-qa~aa~Gq~~l~~~~~~~f~~~g~~~~qillT~~~~~~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~ 170 (718)
T PLN02418 92 DG-KACAAVGQSELMALYDTLFSQLDVTASQLLVTDSDFRDPDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDS 170 (718)
T ss_pred HH-HHHHHhhHHHHHHHHHHHHHHcCCeEEEEEecHhHhcchhHhHhHHHHHHHHHHCCCEEEEcCCCCccccccccccc
Confidence 43 4444444444 445559999997743 222333211 1122357888999999999998732111
Q ss_pred --CC-cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHH----H-------hccccchHHHHHH
Q psy13351 549 --FF-TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI----S-------KKLEIMDSTAFSF 614 (837)
Q Consensus 549 --~~-s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~----~-------~G~~v~~~~Aa~~ 614 (837)
.+ .+|++|+++|..++||.|+|+|||||||++||+ +|++++|++++..+.. . .|+|.+|+.|+..
T Consensus 171 ~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~ 249 (718)
T PLN02418 171 SGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVN 249 (718)
T ss_pred cCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHH
Confidence 22 499999999999999999999999999999997 5899999998653321 1 6899999999999
Q ss_pred HHhCCCCEEEEEccCcchHHHHHcCCccceEEEEeee
Q psy13351 615 CRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI 651 (837)
Q Consensus 615 a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~ 651 (837)
|.++|++++|+||..|+.+.+++.|+.+||+|.+..+
T Consensus 250 a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~ 286 (718)
T PLN02418 250 AASAGIPVVITSGYALDNIRKVLRGERVGTLFHQDAH 286 (718)
T ss_pred HHHCCCcEEEeCCCCcchHHHHhcCCCCceEeccccc
Confidence 9999999999999999999999999999999988633
|
|
| >PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-23 Score=220.90 Aligned_cols=225 Identities=21% Similarity=0.238 Sum_probs=170.3
Q ss_pred HHHHHHhhhhhhhccCCCccccc---cchhhhhhhhHHhhhcCceEEEEeCcch----hhhccccccc-CCCcchHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINS---SIIKNIISEISEIVSCGIELAIVIGGGN----ICRGISNKIQ-NIDRSTADYMG 487 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~---~~i~~la~~I~~l~~~G~~vVIVhGGG~----~~~~~~~~~~-~~~~~~~~~~~ 487 (837)
++|+.+ +|.++...+.....+ +.++..|++|+++.+.|++++|+||+|+ .+++...... +.++.+++.+.
T Consensus 4 ~ivval--gGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~ 81 (313)
T PRK12454 4 RIVIAL--GGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAG 81 (313)
T ss_pred eEEEEe--ChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhh
Confidence 566776 777777544322222 4899999999999999999999999974 5555333332 36778899999
Q ss_pred HHHHHHHHHHHHHH----HHHcCCceeEeehhch-----------------hhh--------------------------
Q psy13351 488 MLATIINSLALFDI----LNKSGIISHVMSAISI-----------------EKF-------------------------- 520 (837)
Q Consensus 488 ~~~~~~~~~ll~~~----L~~~gi~a~~l~~~~~-----------------~~~-------------------------- 520 (837)
+...|+.+++|+.+ |...|++....+..+. +.+
T Consensus 82 a~sqG~igy~l~~al~~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~R 161 (313)
T PRK12454 82 AMTQGWIGYMIQQALRNELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGWR 161 (313)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCceE
Confidence 99999988887766 6777765533332211 000
Q ss_pred --------hhccchHHHHHHHhCCCEEEEeCCCCCCCC-------------cchHHHHHHHHHcCCcEEEEeeccCcccc
Q psy13351 521 --------LESYIPLNAIKYLEEGKVVIFAGGIGNPFF-------------TTDTTAALRAAEIKAEIILKATKVDGIYN 579 (837)
Q Consensus 521 --------~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~-------------s~D~lAa~lA~~L~Ad~liilTDVdGVy~ 579 (837)
...++.+.+..+|+.|.|||++|+.|.|.+ ++|++|+++|..|+||+|+|+|||||||+
T Consensus 162 rvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~ 241 (313)
T PRK12454 162 RVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYL 241 (313)
T ss_pred EEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeC
Confidence 112346788999999999999998777653 25999999999999999999999999998
Q ss_pred CCCCCCCCceeccccCHHHHHH--------hccccchHHHH-HHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 580 SDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 580 ~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa-~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
+++ .|++++|++++.+|+.+ .|+|.+|+.|+ +++.+.+.+++|++ ++++.++|.|+ .||+|.+
T Consensus 242 ~~~--~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 242 NYG--KPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP 313 (313)
T ss_pred CCC--CCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence 743 47899999999988755 47899999888 55566667888874 66799999998 8999964
|
|
| >cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=219.46 Aligned_cols=218 Identities=20% Similarity=0.224 Sum_probs=166.8
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---c----cC---CCcchHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---I----QN---IDRSTADY 485 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~----~~---~~~~~~~~ 485 (837)
.+|+|. .|+. .++ ++..++++++++.+...|.++|||||||.....+... . .+ .++..++.
T Consensus 16 ~~ViKl--GGs~-i~~------~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~~~~~ 86 (279)
T cd04250 16 TVVIKY--GGNA-MKD------EELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETMEI 86 (279)
T ss_pred EEEEEE--ChHH-hcC------ccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHH
Confidence 567784 3443 222 2356678888888888899999999998554332211 1 11 23334455
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------------------hhccchHHHHHHHhCCCEEEEeCC
Q psy13351 486 MGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------------LESYIPLNAIKYLEEGKVVIFAGG 544 (837)
Q Consensus 486 ~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------------------~~~~~~~~i~~ll~~g~VPVv~G~ 544 (837)
..++.++..+..+++.|.+.|++++++++.+.+.+ +..++.+.+..+++.|.|||++|.
T Consensus 87 ~~~~~~g~ln~~l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~ 166 (279)
T cd04250 87 VEMVLVGKVNKEIVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPV 166 (279)
T ss_pred HHHHHcCchHHHHHHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCC
Confidence 55554455666678999999999999999864211 344678899999999999999983
Q ss_pred CCC--C----CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHH
Q psy13351 545 IGN--P----FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTA 611 (837)
Q Consensus 545 ~G~--~----~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~A 611 (837)
+. . ++++|++|+++|..|+||.|+++|||||||++||+ ++++|++++++|+.+ .|+|..++.+
T Consensus 167 -~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~ 242 (279)
T cd04250 167 -GVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEA 242 (279)
T ss_pred -ccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHH
Confidence 32 1 24699999999999999999999999999999984 478999999887755 6899999999
Q ss_pred HHHHHhCCCC-EEEEEccCcch-HHHHHcCCccceEE
Q psy13351 612 FSFCRDQKLP-IRVFSIIKSGA-LKRVIEGKNEGTLV 646 (837)
Q Consensus 612 a~~a~~~gi~-v~I~ng~~~~~-i~~al~Ge~~GT~I 646 (837)
|..+.++|++ ++|+||..|++ +.+++.++..||+|
T Consensus 243 a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 243 CIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 9998888886 99999999986 57888888899985
|
In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A |
| >cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=217.70 Aligned_cols=155 Identities=19% Similarity=0.319 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhh-------------ccchHHHHHHHhCCCEEEEeCCCCCC--
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLE-------------SYIPLNAIKYLEEGKVVIFAGGIGNP-- 548 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~-------------~~~~~~i~~ll~~g~VPVv~G~~G~~-- 548 (837)
+.+...+..+++.+++.+|+.+|++++++++.++..... ......+..+++.|.|||++||.|..
T Consensus 119 d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~~~~ 198 (298)
T cd04244 119 DYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATED 198 (298)
T ss_pred hHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCccccCCC
Confidence 444444455589999999999999999999987632100 00112345567889999999986632
Q ss_pred C----C---cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhC
Q psy13351 549 F----F---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQ 618 (837)
Q Consensus 549 ~----~---s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~ 618 (837)
+ + .+|++|+.+|.+|+|+.+++||||||||++||+.+|+++++++++++|+.+ +|++++|+.|+.+|.++
T Consensus 199 g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~ 278 (298)
T cd04244 199 GAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEK 278 (298)
T ss_pred CCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHc
Confidence 1 1 389999999999999999999999999999999999999999999999987 69999999999999999
Q ss_pred CCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 619 KLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 619 gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||++|.|+++|+ ..||+|+
T Consensus 279 ~Ipi~i~n~~~p~---------~~GT~I~ 298 (298)
T cd04244 279 GIPVRVKNTFNPE---------APGTLIT 298 (298)
T ss_pred CCcEEEeeCCCCC---------CCCCEeC
Confidence 9999999999984 5799984
|
The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. |
| >PRK00942 acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-23 Score=222.36 Aligned_cols=219 Identities=20% Similarity=0.193 Sum_probs=168.5
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---c----cC---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---I----QN---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~----~~---~~~~~~~ 484 (837)
+.+|+|. |++.++.+ +.+.+++++|+.+.+.|.++|||||||......... . .+ .++..++
T Consensus 24 ~~iViK~---GGs~l~~~------~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~~l~ 94 (283)
T PRK00942 24 KTIVIKY---GGNAMTDE------ELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAETME 94 (283)
T ss_pred CeEEEEE---ChHHhcCc------chHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHHHHH
Confidence 3567884 44433332 457789999999989999999999998544332221 1 01 1334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh----------------hhccchHHHHHHHhCCCEEEEeCCCCCC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF----------------LESYIPLNAIKYLEEGKVVIFAGGIGNP 548 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~----------------~~~~~~~~i~~ll~~g~VPVv~G~~G~~ 548 (837)
...++.++..+..+.+.|..+|++++++++.+.+.+ +..++.+.+..+++.|.|||+++. |.+
T Consensus 95 ~~~~a~~G~l~~~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~-~~~ 173 (283)
T PRK00942 95 VVEMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPI-GVG 173 (283)
T ss_pred HHHHHHcCchHHHHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcCc-EEC
Confidence 555555455566677899999999999998765221 345678999999999999999972 221
Q ss_pred ------CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHH
Q psy13351 549 ------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFC 615 (837)
Q Consensus 549 ------~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a 615 (837)
++++|++|+.+|..|+||+|+|+|||||||++ ++++|++++++|+.+ .|+|..++.++..+
T Consensus 174 ~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~ 247 (283)
T PRK00942 174 EDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDA 247 (283)
T ss_pred CCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 35699999999999999999999999999986 478999999887755 58899999999888
Q ss_pred HhCCC-CEEEEEccCcch-HHHHHcCCccceEEEEe
Q psy13351 616 RDQKL-PIRVFSIIKSGA-LKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 616 ~~~gi-~v~I~ng~~~~~-i~~al~Ge~~GT~I~~~ 649 (837)
.++|+ +++|++|..|++ +.+++.|+.+||+|.++
T Consensus 248 ~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 248 ARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred HHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 88887 599999999998 88999999999999863
|
|
| >cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-22 Score=214.17 Aligned_cols=203 Identities=19% Similarity=0.229 Sum_probs=154.2
Q ss_pred ccccchhhhhhhhHHhhhcCceEEEEeCc--c--hhhhccccc-------------------------------------
Q psy13351 436 INSSIIKNIISEISEIVSCGIELAIVIGG--G--NICRGISNK------------------------------------- 474 (837)
Q Consensus 436 i~~~~i~~la~~I~~l~~~G~~vVIVhGG--G--~~~~~~~~~------------------------------------- 474 (837)
-+.+.++++++.|..-.+.|.++++|+|+ | +........
T Consensus 12 ~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~~~~~L~~~~~~~i~~~~~ 91 (295)
T cd04259 12 SSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNLAEQLEVDADALLANDLA 91 (295)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 45667888888887655567789999997 5 111100000
Q ss_pred -----------ccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhh----------------hccchH
Q psy13351 475 -----------IQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFL----------------ESYIPL 527 (837)
Q Consensus 475 -----------~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~----------------~~~~~~ 527 (837)
....++...+.+...+..+++.+++.+|+..|+++..+.+.++.... ......
T Consensus 92 ~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~a~v~~~~~~~ 171 (295)
T cd04259 92 QLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADA 171 (295)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecccccccccccccceehhhhhHH
Confidence 00123333444444445558999999999999999999987752111 111234
Q ss_pred HHHHHHhC-CCEEEEeCCCCCC--C-C------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHH
Q psy13351 528 NAIKYLEE-GKVVIFAGGIGNP--F-F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD 597 (837)
Q Consensus 528 ~i~~ll~~-g~VPVv~G~~G~~--~-~------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~ 597 (837)
.+...+.. +.|||++||.|.. + + .+|++|+.+|.+|+||.+++||||||||++||+.+|+++++++++++
T Consensus 172 ~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ 251 (295)
T cd04259 172 LLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYD 251 (295)
T ss_pred HHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHH
Confidence 56666665 6799999998733 2 1 29999999999999999999999999999999999999999999999
Q ss_pred HHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 598 EVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 598 e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|+.+ .|++++|+.|+.+|.++|+|++|.|+++|+ ..||+|+
T Consensus 252 ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~I~ 295 (295)
T cd04259 252 EAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPE---------LSGTLIT 295 (295)
T ss_pred HHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCC---------CCCcEeC
Confidence 9877 699999999999999999999999999884 5799984
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. |
| >PRK12686 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-22 Score=214.71 Aligned_cols=224 Identities=17% Similarity=0.201 Sum_probs=166.2
Q ss_pred HHHHHHhhhhhhhccCC-CccccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhccccccc-CCCcchHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGD-AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ-NIDRSTADYMGML 489 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~-~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~-~~~~~~~~~~~~~ 489 (837)
++|+++ +|.++...+ ......+.++..|++|+.|.+.|+++||+||+| +.++....... ..++.+++.+.+.
T Consensus 4 ~iVial--GGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~ 81 (312)
T PRK12686 4 KIVIAL--GGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAM 81 (312)
T ss_pred EEEEEc--ChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhh
Confidence 456665 666666433 234455688999999999999999999999998 33332222222 3578899999999
Q ss_pred HHHHHHHHHHHH----HHHcCCce--e------Eeehhch-------------------------hh-h-----------
Q psy13351 490 ATIINSLALFDI----LNKSGIIS--H------VMSAISI-------------------------EK-F----------- 520 (837)
Q Consensus 490 ~~~~~~~ll~~~----L~~~gi~a--~------~l~~~~~-------------------------~~-~----------- 520 (837)
..|..+++|+.. |...+... + .++..+. +. +
T Consensus 82 sqg~iGy~~~q~l~~~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rrv 161 (312)
T PRK12686 82 SQGMIGYWLQNALNNELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRRV 161 (312)
T ss_pred ccchhhHHHHHHHHHHHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEEe
Confidence 999999988877 44444322 1 1111110 00 0
Q ss_pred h------hccchHHHHHHHhCCCEEEEeCCCCCC-------------CCcchHHHHHHHHHcCCcEEEEeeccCccccCC
Q psy13351 521 L------ESYIPLNAIKYLEEGKVVIFAGGIGNP-------------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSD 581 (837)
Q Consensus 521 ~------~~~~~~~i~~ll~~g~VPVv~G~~G~~-------------~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~d 581 (837)
+ .-++.+.+..++++|+|||.+|+.|.| .+++|++|++||..|+||+|+|+|||||||++
T Consensus 162 V~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~- 240 (312)
T PRK12686 162 VPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN- 240 (312)
T ss_pred eCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC-
Confidence 1 115678899999999999998875533 13579999999999999999999999999995
Q ss_pred CCCCCCceeccccCHHHHHH--------hccccchHHHHHHHHhC--CCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 582 PNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQ--KLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 582 P~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~~a~~~--gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|. .|++++|++++.+++.. .|+|.+|+.|+..+.+. |.+++|++ ++.+.++|.|+ .||+|.
T Consensus 241 ~~-~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 241 FN-KPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT 311 (312)
T ss_pred CC-CCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence 43 48899999999888755 48999999988887753 56788876 67788999998 899985
|
|
| >TIGR00657 asp_kinases aspartate kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-22 Score=225.82 Aligned_cols=312 Identities=17% Similarity=0.193 Sum_probs=205.0
Q ss_pred cccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhccccccc-CCCc-----------------------------
Q psy13351 435 NINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ-NIDR----------------------------- 480 (837)
Q Consensus 435 ~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~-~~~~----------------------------- 480 (837)
.-+.+.+.++++.|......|+++|+||||+ +.+........ ....
T Consensus 12 v~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~ 91 (441)
T TIGR00657 12 VGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILERLIPQAIAEELKRL 91 (441)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3456788999999998777889999999983 11111110000 0000
Q ss_pred ---------chHHHHHHHHHH--HHHHHHHHHHHHcCCceeEeehhchhhh----------hhccchHHHHHHHhCCCEE
Q psy13351 481 ---------STADYMGMLATI--INSLALFDILNKSGIISHVMSAISIEKF----------LESYIPLNAIKYLEEGKVV 539 (837)
Q Consensus 481 ---------~~~~~~~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~~----------~~~~~~~~i~~ll~~g~VP 539 (837)
.......+++.| .++.+++.+|+.+|++++++++.+.... ....+.+.+..+++.|.||
T Consensus 92 ~~~~~~~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~~~~vp 171 (441)
T TIGR00657 92 LDAELVLEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGIIP 171 (441)
T ss_pred HHHHHhhhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHhcCCEE
Confidence 011122333434 4788899999999999999999875321 3445678899999999999
Q ss_pred EEeCCCCCC---CC------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccc
Q psy13351 540 IFAGGIGNP---FF------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIM 607 (837)
Q Consensus 540 Vv~G~~G~~---~~------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~ 607 (837)
|++|+.|.+ .. .+|++|+.+|.+|+||.|++||||||||++||+.+|+++++++++++|+.+ .|++++
T Consensus 172 Vv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~ 251 (441)
T TIGR00657 172 VVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVL 251 (441)
T ss_pred EEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCccc
Confidence 999975522 11 279999999999999999999999999999999999999999999998877 789999
Q ss_pred hHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEeee----hhh------hhh--hhhHHHhHHHHHHHHHHH
Q psy13351 608 DSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI----MII------SDI--KKNTKQKMLNTIKILKEN 675 (837)
Q Consensus 608 ~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~----~v~------~~i--~~~~~~~m~~~i~~~~~~ 675 (837)
|+.|+.+|.++++|++|.|+.+|+ ..||+|.+... ..+ +.+ +.-.-..|.. ...+.+=
T Consensus 252 ~~~a~~~~~~~~i~i~i~~~~~~~---------~~GT~I~~~~~~~~~~~i~~It~~~~v~~Isv~g~~~~~-~g~la~i 321 (441)
T TIGR00657 252 HPRTLEPAMRAKIPIVVKSTFNPE---------APGTLIVASTKEMEEPIVKGLSLDRNQARVTVSGLGMKG-PGFLARV 321 (441)
T ss_pred CHHHHHHHHHcCCeEEEecCCCCC---------CCceEEEeCCCccccCccceEEEeCCEEEEEEECCCCCC-ccHHHHH
Confidence 999999999999999999999873 46999986521 100 111 0000011221 1222222
Q ss_pred HHhhhcCCCCccccc------eeEEEecccccc-----------cceeeeeeccCC-ceEEEe---cC-CcccHHHHHHH
Q psy13351 676 LKKVRTGRANIGMLD------NIQVKYHEHLTK-----------LLKIANITLFNS-HTISIQ---PF-EKEMSSIIKKA 733 (837)
Q Consensus 676 l~~irtgr~~p~~ld------~i~V~~~g~~~~-----------L~~lA~v~~~~~-~~l~i~---~~-d~~~~~~I~ka 733 (837)
|..+..-..++.++. ++.+-....... ...+..|++.++ ..+.|. .+ .+.....|.++
T Consensus 322 f~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~ 401 (441)
T TIGR00657 322 FGALAEAGINVDLITQSSSETSISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEA 401 (441)
T ss_pred HHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEEEEEEcCCCCCCCchHHHHHHH
Confidence 333333334444442 233333222111 123344555443 223331 12 47888899999
Q ss_pred HHhcCCCccce-ecCCeeEEeCCC
Q psy13351 734 INEANLGLNPT-IQGNIIYVSIPP 756 (837)
Q Consensus 734 I~~s~l~~~p~-~~~~~i~v~iP~ 756 (837)
+.+.++++.-. ..+..|.+.++.
T Consensus 402 La~~~Inv~~i~~se~~Is~vV~~ 425 (441)
T TIGR00657 402 LAQNGINIEMISSSEINISFVVDE 425 (441)
T ss_pred HHHCCCCEEEEEecCCcEEEEEeH
Confidence 98887777555 355678888864
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. |
| >cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC) | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-22 Score=212.47 Aligned_cols=192 Identities=19% Similarity=0.231 Sum_probs=152.8
Q ss_pred hhhhhhhHHhhhcCceEEEEeCcchhhhccccc---cc-------C-----CCcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy13351 442 KNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ-------N-----IDRSTADYMGMLATIINSLALFDILNKSG 506 (837)
Q Consensus 442 ~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~~-------~-----~~~~~~~~~~~~~~~~~~~ll~~~L~~~g 506 (837)
++++++|+.+ |.++|||||||+........ .. + .++.+++.+.++. +..+..+.+.|.++|
T Consensus 14 ~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~-~~ln~~iv~~L~~~G 89 (257)
T cd04251 14 DKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVM-GLINKKIVARLHSLG 89 (257)
T ss_pred HHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence 5789999987 88999999999554332211 11 2 2555666667666 555666788999999
Q ss_pred CceeEeehhchhh--------------------------hhhccchHHHHHHHhCCCEEEEeCCC----CC-CCCcchHH
Q psy13351 507 IISHVMSAISIEK--------------------------FLESYIPLNAIKYLEEGKVVIFAGGI----GN-PFFTTDTT 555 (837)
Q Consensus 507 i~a~~l~~~~~~~--------------------------~~~~~~~~~i~~ll~~g~VPVv~G~~----G~-~~~s~D~l 555 (837)
++++++++.+.+. .+..++.+.+..+++.|+|||++++. |. .++++|++
T Consensus 90 i~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~ 169 (257)
T cd04251 90 VKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRA 169 (257)
T ss_pred CCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHHH
Confidence 9999999977521 13456789999999999999998742 11 24679999
Q ss_pred HHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-----hccccchHHHHHHHHhCCC-CEEEEEccC
Q psy13351 556 AALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFSFCRDQKL-PIRVFSIIK 629 (837)
Q Consensus 556 Aa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-----~G~~v~~~~Aa~~a~~~gi-~v~I~ng~~ 629 (837)
|+.+|..|+||+|+|+|||||||++ ++++++++++|+.+ .|+|..|+.++..+.++|+ +++|++|..
T Consensus 170 A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~ 242 (257)
T cd04251 170 AAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARA 242 (257)
T ss_pred HHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999963 67899999877755 5999999999999999988 578899999
Q ss_pred cchHHHHHcCCccceEE
Q psy13351 630 SGALKRVIEGKNEGTLV 646 (837)
Q Consensus 630 ~~~i~~al~Ge~~GT~I 646 (837)
|+++.++|.|+ ||+|
T Consensus 243 ~~~l~~~l~g~--gT~i 257 (257)
T cd04251 243 DSPISSALNGG--GTVI 257 (257)
T ss_pred ccHHHHHHcCC--CcCC
Confidence 99999999985 9975
|
This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK). |
| >cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-22 Score=211.83 Aligned_cols=201 Identities=19% Similarity=0.183 Sum_probs=157.9
Q ss_pred cchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccc-------cC---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy13351 439 SIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QN---IDRSTADYMGMLATIINSLALFDILNKSGII 508 (837)
Q Consensus 439 ~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~ 508 (837)
+.+.+++++|+.+...|.++|||||||.......... .+ .++..++...++.++..+..+.++|..+|++
T Consensus 14 ~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln~~i~~~L~~~Gv~ 93 (256)
T cd04238 14 ELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVNKELVSLLNRAGGK 93 (256)
T ss_pred cHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHHHHHhCCCC
Confidence 3677899999988888999999999985543322211 01 1344455555554355666678999999999
Q ss_pred eeEeehhchhh-----------------hhhccchHHHHHHHhCCCEEEEeCCCCC--C----CCcchHHHHHHHHHcCC
Q psy13351 509 SHVMSAISIEK-----------------FLESYIPLNAIKYLEEGKVVIFAGGIGN--P----FFTTDTTAALRAAEIKA 565 (837)
Q Consensus 509 a~~l~~~~~~~-----------------~~~~~~~~~i~~ll~~g~VPVv~G~~G~--~----~~s~D~lAa~lA~~L~A 565 (837)
++++++.+.+. .+..++.+.+..+++.|.|||++|. |. . ++++|++|+++|..|+|
T Consensus 94 a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~-~~~~~g~~~~~~~D~~A~~lA~~l~a 172 (256)
T cd04238 94 AVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPI-AVDEDGETYNVNADTAAGAIAAALKA 172 (256)
T ss_pred CCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCc-EECCCCcEEEECHHHHHHHHHHHcCC
Confidence 99999987521 1345678999999999999999972 21 1 34599999999999999
Q ss_pred cEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhCCC-CEEEEEccCcchHHHHH
Q psy13351 566 EIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVI 637 (837)
Q Consensus 566 d~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~gi-~v~I~ng~~~~~i~~al 637 (837)
|.|+|+|||||||++ +++++++++++|+.+ .|+|..++.++..+.+.|+ +++|++|..|++|.++|
T Consensus 173 ~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l 246 (256)
T cd04238 173 EKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLEL 246 (256)
T ss_pred CEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHH
Confidence 999999999999987 268999999877654 5889999999988888776 69999999999999999
Q ss_pred cC-CccceEE
Q psy13351 638 EG-KNEGTLV 646 (837)
Q Consensus 638 ~G-e~~GT~I 646 (837)
.| +..||+|
T Consensus 247 ~~~~~~GT~i 256 (256)
T cd04238 247 FTDEGIGTMI 256 (256)
T ss_pred hcCCCCCCCC
Confidence 98 5689976
|
Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
| >cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-22 Score=211.83 Aligned_cols=200 Identities=18% Similarity=0.179 Sum_probs=149.6
Q ss_pred cchhhhhhhhHHhhh-cCceEEEEeCcchhhhccc---cccc----C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy13351 439 SIIKNIISEISEIVS-CGIELAIVIGGGNICRGIS---NKIQ----N---IDRSTADYMGMLATIINSLALFDILNKSGI 507 (837)
Q Consensus 439 ~~i~~la~~I~~l~~-~G~~vVIVhGGG~~~~~~~---~~~~----~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi 507 (837)
+.+++++++|+.+.. .|.++|||||||....... .... + .+...++...++..+..+..+.+.+.++|+
T Consensus 14 ~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~n~~lv~~l~~~Gv 93 (252)
T cd04249 14 AALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTANKQLMAQAIKAGL 93 (252)
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcccHHHHHHHHhCCC
Confidence 568889999998754 5789999999995532211 1111 1 234455555444444444555566668999
Q ss_pred ceeEeehhchhhh--------------hhccchHHHHHHHhCCCEEEEeCCCCC------CCCcchHHHHHHHHHcCCcE
Q psy13351 508 ISHVMSAISIEKF--------------LESYIPLNAIKYLEEGKVVIFAGGIGN------PFFTTDTTAALRAAEIKAEI 567 (837)
Q Consensus 508 ~a~~l~~~~~~~~--------------~~~~~~~~i~~ll~~g~VPVv~G~~G~------~~~s~D~lAa~lA~~L~Ad~ 567 (837)
+++++++.+.+.+ +..++.+.+..+++.|.|||++|. |. .++++|++|+++|..|+||
T Consensus 94 ~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~-g~~~~g~~~~~~~D~~A~~lA~~l~A~- 171 (252)
T cd04249 94 KPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSI-GADDQGQLMNVNADQAATAIAQLLNAD- 171 (252)
T ss_pred CceeeeccCCCEEEEEEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCC-EECCCCCEeeecHHHHHHHHHHHcCCC-
Confidence 9999999865211 345678999999999999999972 21 2466999999999999999
Q ss_pred EEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHH-HhCCCCEEEEEccCcchHHHHHcC
Q psy13351 568 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFC-RDQKLPIRVFSIIKSGALKRVIEG 639 (837)
Q Consensus 568 liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a-~~~gi~v~I~ng~~~~~i~~al~G 639 (837)
++++|||||||++|| ++|++++.+|+.+ .|+|..++.++..+ ...+++++|++|..|+.+.+++.|
T Consensus 172 ~i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g 245 (252)
T cd04249 172 LVLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAG 245 (252)
T ss_pred EEEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcC
Confidence 679999999998765 5788888777654 47788888766554 555689999999999999999999
Q ss_pred CccceEE
Q psy13351 640 KNEGTLV 646 (837)
Q Consensus 640 e~~GT~I 646 (837)
+.+||+|
T Consensus 246 ~~~GT~I 252 (252)
T cd04249 246 EPVGTKI 252 (252)
T ss_pred CCCCcCC
Confidence 9999986
|
There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK). |
| >cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=209.86 Aligned_cols=155 Identities=21% Similarity=0.281 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhC-CCEEEEeCCCCCC--CCc
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEE-GKVVIFAGGIGNP--FFT 551 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~i~~ll~~-g~VPVv~G~~G~~--~~s 551 (837)
+.+...+..+++.+|+.+|...|+++..+++.++-.. ........+..++.. +.|||++||.|.. +.+
T Consensus 118 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ 197 (294)
T cd04257 118 AKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGET 197 (294)
T ss_pred hhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCE
Confidence 3333344445899999999999999999998775110 111224566666665 8999999988732 222
Q ss_pred -------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 552 -------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 552 -------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+|++|+++|..|+||.+++||||||||++||+.+|+|++++.++++|+.+ .|.+++++.|+.+|.++|+|
T Consensus 198 ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ip 277 (294)
T cd04257 198 TTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIP 277 (294)
T ss_pred EECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCC
Confidence 79999999999999999999999999999999999999999999999887 79999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEE
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++|.|+++|+ ..||+|.
T Consensus 278 i~i~~~~~p~---------~~GT~I~ 294 (294)
T cd04257 278 ILIKNTFNPE---------APGTLIS 294 (294)
T ss_pred EEEeeCCCCC---------CCCCEeC
Confidence 9999999884 5799984
|
These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act |
| >cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=207.79 Aligned_cols=155 Identities=25% Similarity=0.296 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh-----hhcc----chHHHHHHHhC-CCEEEEeCCCCCC--CCc
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF-----LESY----IPLNAIKYLEE-GKVVIFAGGIGNP--FFT 551 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~-----~~~~----~~~~i~~ll~~-g~VPVv~G~~G~~--~~s 551 (837)
+.+...+..+++.+++.+|...|+++..+++.++-.. .... ....+..++.. +.|||++||.|.. +.+
T Consensus 117 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ 196 (293)
T cd04243 117 AEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGET 196 (293)
T ss_pred hHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCE
Confidence 4444444445899999999999999999998765110 0011 13467777776 8999999988632 222
Q ss_pred -------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 552 -------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 552 -------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+|++|+++|..|+||.+++||||||||++||+.+|+|+++++++++|+.+ .|.+++|+.|+.+|.++|+|
T Consensus 197 ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~ 276 (293)
T cd04243 197 TTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIP 276 (293)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCc
Confidence 69999999999999999999999999999999999999999999999887 79999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEE
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++|.|+++|+ ..||+|+
T Consensus 277 i~i~~~~~p~---------~~GT~I~ 293 (293)
T cd04243 277 IFIKNTFNPE---------APGTLIS 293 (293)
T ss_pred EEEecCCCCC---------CCCCEeC
Confidence 9999999984 5799984
|
These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK- |
| >PRK06291 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-21 Score=221.14 Aligned_cols=159 Identities=22% Similarity=0.296 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhh---------h----ccchHHHHHHHhCCCEEEEeCCCCCC
Q psy13351 482 TADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFL---------E----SYIPLNAIKYLEEGKVVIFAGGIGNP 548 (837)
Q Consensus 482 ~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~---------~----~~~~~~i~~ll~~g~VPVv~G~~G~~ 548 (837)
..|.+...+..+++.+|+.+|+..|++++++++.+++.+. . ......+..+++.|.|||++||.|..
T Consensus 121 ~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~ 200 (465)
T PRK06291 121 SRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGET 200 (465)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcC
Confidence 3444444445558999999999999999999998763210 0 11123566678899999999976532
Q ss_pred ---C---C---cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHH
Q psy13351 549 ---F---F---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCR 616 (837)
Q Consensus 549 ---~---~---s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~ 616 (837)
. + .+|++|+++|..|+||.+++||||||||++||+.+|+++++++++++|+.+ .|++++||.|+.+|.
T Consensus 201 ~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~ 280 (465)
T PRK06291 201 EEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAM 280 (465)
T ss_pred CCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHH
Confidence 1 2 389999999999999999999999999999999999999999999999887 699999999999999
Q ss_pred hCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 617 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 617 ~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++|+|++|.|+++|+ +.||+|.++
T Consensus 281 ~~~i~i~i~~~~~~~---------~~gt~i~~~ 304 (465)
T PRK06291 281 EKGIPVRVKNTFNPE---------FPGTLITSD 304 (465)
T ss_pred HcCCcEEEecCCCCC---------CCceEEEec
Confidence 999999999999884 579999864
|
|
| >cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=199.72 Aligned_cols=180 Identities=21% Similarity=0.250 Sum_probs=142.8
Q ss_pred hhhhhhhhHHhhhcCceEEEEeCcchhhhccccc--ccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchh
Q psy13351 441 IKNIISEISEIVSCGIELAIVIGGGNICRGISNK--IQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIE 518 (837)
Q Consensus 441 i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~ 518 (837)
+..+.+.+..+. |++++||.|||++++.+... ..++++...|+++++++.+++++|+..+...+
T Consensus 12 ~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~~~~~~~~------------ 77 (203)
T cd04240 12 AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLADLEPRLV------------ 77 (203)
T ss_pred HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccCCccc------------
Confidence 444555555442 88999999999985544433 44789999999999999999998764332221
Q ss_pred hhhhccchHHHHHHHhCCCEEEEeCC--------CCC-CCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCce
Q psy13351 519 KFLESYIPLNAIKYLEEGKVVIFAGG--------IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAI 589 (837)
Q Consensus 519 ~~~~~~~~~~i~~ll~~g~VPVv~G~--------~G~-~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~ 589 (837)
..+...+..++..|.+||+.+. .+. .++|+|++|+++|..|+|++|+++|||||||++| ++
T Consensus 78 ----~~~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~ 147 (203)
T cd04240 78 ----ARTLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GK 147 (203)
T ss_pred ----cCCHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC------Cc
Confidence 1234567788999999999873 111 2478999999999999999999999999999864 78
Q ss_pred eccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCC-ccceEE
Q psy13351 590 IYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK-NEGTLV 646 (837)
Q Consensus 590 ~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge-~~GT~I 646 (837)
++++++..++.. ...+|..+++.+.++|++++|+||..|+++.+++.|+ .+||+|
T Consensus 148 ~i~~i~~~e~~~--~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I 203 (203)
T cd04240 148 LVNEIAAAELLG--ETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred CccccCHHHhCC--CCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence 999999887653 4456777788899999999999999999999999998 789975
|
Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily. |
| >PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.8e-22 Score=208.64 Aligned_cols=201 Identities=20% Similarity=0.285 Sum_probs=147.0
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCC-----------cchHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNID-----------RSTADY 485 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~-----------~~~~~~ 485 (837)
+|+|. |++.+.+.+ ++ +.+++++|+.+.+.|+++|||||||.....+.... +.. ......
T Consensus 3 ~ViK~---GGs~l~~~~----~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~ 73 (242)
T PF00696_consen 3 IVIKL---GGSSLTDKD----EE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKY-GIEPKFVDGSRVTDIETGLI 73 (242)
T ss_dssp EEEEE----HHGHSSHS----HH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHC-THTTSEETHHCHBHHHHHHH
T ss_pred EEEEE---CchhhCCch----HH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhc-cCCcccchhhhhhhhhhhHH
Confidence 45673 444443332 35 99999999999999999999999986555443331 111 111222
Q ss_pred HHHHHHHHHHH-----HHHHHHHHcCCceeEeehhchhhhh-----hccchHHHHHHHhCCCEEEEeCCCC-----C---
Q psy13351 486 MGMLATIINSL-----ALFDILNKSGIISHVMSAISIEKFL-----ESYIPLNAIKYLEEGKVVIFAGGIG-----N--- 547 (837)
Q Consensus 486 ~~~~~~~~~~~-----ll~~~L~~~gi~a~~l~~~~~~~~~-----~~~~~~~i~~ll~~g~VPVv~G~~G-----~--- 547 (837)
....+....+. .+.+.+..++.+++.+.+.+.+... ..++.+.+..+++.|.|||++|+.+ .
T Consensus 74 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~ 153 (242)
T PF00696_consen 74 ITMAAAAELNRDALLDEIVSAGERLGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTT 153 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTEEE
T ss_pred HHHHHhhccccchhHHHHHHhhhhhhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCccc
Confidence 22222222222 5666788899988888777753321 2356789999999999999999542 1
Q ss_pred -CCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH--------hccc-cchHHHHHHHHh
Q psy13351 548 -PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLE-IMDSTAFSFCRD 617 (837)
Q Consensus 548 -~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~--------~G~~-v~~~~Aa~~a~~ 617 (837)
...++|++|+++|.+|+|+.|+|+|||||||++||+.+|+++++++++++|+.+ .|+| +.++.|.+.+++
T Consensus 154 ~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~ 233 (242)
T PF00696_consen 154 LGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEE 233 (242)
T ss_dssp EEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Confidence 245699999999999999999999999999999999999999999999998876 3444 555667788888
Q ss_pred CCCCEEEEE
Q psy13351 618 QKLPIRVFS 626 (837)
Q Consensus 618 ~gi~v~I~n 626 (837)
++++++|+|
T Consensus 234 ~~~~v~I~n 242 (242)
T PF00696_consen 234 GGIPVHIIN 242 (242)
T ss_dssp TTSEEEEEE
T ss_pred CCCcEEEeC
Confidence 899999986
|
In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A .... |
| >cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-21 Score=204.66 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=136.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCCC-
Q psy13351 480 RSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNPF- 549 (837)
Q Consensus 480 ~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~~- 549 (837)
+...+.+...+..+++.+|+.+|+..|+++..+++.+++.. +.....+.+.+.+..+.|||++||.|.+.
T Consensus 109 ~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~ 188 (288)
T cd04245 109 DYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKN 188 (288)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCC
Confidence 44556666666667899999999999999999999887322 11124567888888899999999988541
Q ss_pred --------CcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhC
Q psy13351 550 --------FTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQ 618 (837)
Q Consensus 550 --------~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~ 618 (837)
-++|+.|+.+|.+|+||.+.+||||||||++||+.+|+|+.+++++|+|+.+ +|++++|+.|+.+|.++
T Consensus 189 G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~ 268 (288)
T cd04245 189 GDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEA 268 (288)
T ss_pred CCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHC
Confidence 2499999999999999999999999999999999999999999999999988 79999999999999999
Q ss_pred CCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 619 KLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 619 gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++|++|.|.++|+ ..||+|.
T Consensus 269 ~Ipi~v~n~~~p~---------~~GT~I~ 288 (288)
T cd04245 269 GIPINIKNTNHPE---------APGTLIV 288 (288)
T ss_pred CCcEEEeeCCCCC---------CCCceeC
Confidence 9999999999885 5799984
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. |
| >PRK08373 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=206.18 Aligned_cols=157 Identities=24% Similarity=0.288 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh------------hhccchHHHHHHHhCCCEEEEeCCCCCC-
Q psy13351 482 TADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF------------LESYIPLNAIKYLEEGKVVIFAGGIGNP- 548 (837)
Q Consensus 482 ~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~------------~~~~~~~~i~~ll~~g~VPVv~G~~G~~- 548 (837)
..|.+...+...++.+++.+|...|+++..+++.++-.. ....+.+.+..+++.|.|||++|+.|+.
T Consensus 101 ~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~ 180 (341)
T PRK08373 101 LRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLN 180 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCC
Confidence 345555555556899999999999999999999765110 0113446788889999999999988742
Q ss_pred C-C------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhC
Q psy13351 549 F-F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQ 618 (837)
Q Consensus 549 ~-~------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~ 618 (837)
+ . ++|++|+.+|..|+|+.+++||||||||++||+.+|+|+++++++++|+.+ .|++++++.|.++|.+
T Consensus 181 G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~- 259 (341)
T PRK08373 181 GFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG- 259 (341)
T ss_pred CeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-
Confidence 2 1 279999999999999999999999999999999999999999999999987 7999999999999999
Q ss_pred CCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 619 KLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 619 gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++|++|.|.++| ..||+|.++
T Consensus 260 ~Ipi~v~~t~~~----------~~GT~I~~~ 280 (341)
T PRK08373 260 KIPIIFGRTRDW----------RMGTLVSNE 280 (341)
T ss_pred CCcEEEecCCCC----------CCCcEEecC
Confidence 999999998775 359999764
|
|
| >PLN02551 aspartokinase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-20 Score=212.14 Aligned_cols=227 Identities=18% Similarity=0.243 Sum_probs=164.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHH-----hCCCEEEEeCCC
Q psy13351 480 RSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYL-----EEGKVVIFAGGI 545 (837)
Q Consensus 480 ~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~i~~ll-----~~g~VPVv~G~~ 545 (837)
+...|.+...+..+++.+|+.+|+..|+++..+++.+++.+ +.......+...+ ..+.|||++||.
T Consensus 162 ~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFi 241 (521)
T PLN02551 162 PRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFL 241 (521)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCcc
Confidence 33344444445555899999999999999999999887322 1122233343433 356899999998
Q ss_pred CCC---C-Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHH
Q psy13351 546 GNP---F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAF 612 (837)
Q Consensus 546 G~~---~-~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa 612 (837)
|.. + ++ +|+.|+.+|.+|+|+.+.+||||||||++||+..|+|+++++++|+|+.+ +|++++||.|.
T Consensus 242 g~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai 321 (521)
T PLN02551 242 GKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSM 321 (521)
T ss_pred ccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHH
Confidence 843 2 22 99999999999999999999999999999999999999999999999988 79999999999
Q ss_pred HHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEeeehhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCcccccee
Q psy13351 613 SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNI 692 (837)
Q Consensus 613 ~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i 692 (837)
.+|++++||++|.|.++|+ ..||+|.++..+ +...+..|
T Consensus 322 ~pa~~~~Ipi~vknt~~p~---------~~GT~I~~~~~~--------------------------------~~~~v~~I 360 (521)
T PLN02551 322 RPAREGDIPVRVKNSYNPT---------APGTLITKTRDM--------------------------------SKAVLTSI 360 (521)
T ss_pred HHHHHCCceEEEEecCCCC---------CCCcEEeccccc--------------------------------CCCcccce
Confidence 9999999999999999873 579999653200 00001111
Q ss_pred EEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCcccee-cCCeeEEeCCCCCH
Q psy13351 693 QVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTI-QGNIIYVSIPPLTK 759 (837)
Q Consensus 693 ~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~p~~-~~~~i~v~iP~~T~ 759 (837)
.-.++++.|++.+..++- .+.....|..++.+.+.++.-.. ....|.+.+++-..
T Consensus 361 --------t~~~~v~li~i~~~~m~~----~~g~~arvf~~l~~~~I~Vd~IssSe~sIs~~v~~~~~ 416 (521)
T PLN02551 361 --------VLKRNVTMLDIVSTRMLG----QYGFLAKVFSTFEDLGISVDVVATSEVSISLTLDPSKL 416 (521)
T ss_pred --------ecCCCeEEEEEecCCCCC----cccHHHHHHHHHHHcCCcEEEEeccCCEEEEEEehhHh
Confidence 112444555544433222 35667788888888877655443 34678888877443
|
|
| >cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=202.74 Aligned_cols=158 Identities=26% Similarity=0.303 Sum_probs=129.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhh-----hcc----chHHHHH---HHhCCCEEEEeCCCCCC
Q psy13351 481 STADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFL-----ESY----IPLNAIK---YLEEGKVVIFAGGIGNP 548 (837)
Q Consensus 481 ~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~-----~~~----~~~~i~~---ll~~g~VPVv~G~~G~~ 548 (837)
...+.+...+..+++.+|+.+|+..|+++..+++.++-... ... ....+.. .+..+.|||++||.|.+
T Consensus 111 ~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~ 190 (292)
T cd04258 111 ASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGST 190 (292)
T ss_pred HhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccC
Confidence 34566666666678999999999999999999997761110 011 1111222 23467999999998854
Q ss_pred --C-Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHH
Q psy13351 549 --F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCR 616 (837)
Q Consensus 549 --~-~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~ 616 (837)
+ ++ +|++|+++|.+|+|+.+++||||||||++||+.+|+|++++.++|+|+.+ .|++++||.|..+|.
T Consensus 191 ~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~ 270 (292)
T cd04258 191 EKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAI 270 (292)
T ss_pred CCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHH
Confidence 2 22 79999999999999999999999999999999999999999999999988 799999999999999
Q ss_pred hCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 617 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 617 ~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++++|++|.|.++|+ ..||+|+
T Consensus 271 ~~~ipi~i~~~~~p~---------~~GT~I~ 292 (292)
T cd04258 271 RKNIPVFVGSSKDPE---------AGGTLIT 292 (292)
T ss_pred HcCCcEEEEeCCCCC---------CCCceeC
Confidence 999999999999884 5799984
|
AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. |
| >PRK12352 putative carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=202.50 Aligned_cols=225 Identities=17% Similarity=0.151 Sum_probs=158.0
Q ss_pred HHHHHHhhhhhhhccC-CCccc--cccchhhhhhhhHHhhhcCceEEEEeCcchh---hhcccccc---cCCCcchHHHH
Q psy13351 416 LAVLKAQQLGEALMKG-DAYNI--NSSIIKNIISEISEIVSCGIELAIVIGGGNI---CRGISNKI---QNIDRSTADYM 486 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g-~~~~i--~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~---~~~~~~~~---~~~~~~~~~~~ 486 (837)
++|+++ .|.++... -...+ ..+.+.+++++|+.|...|+++|||||||.. .+...... .+++..+++.+
T Consensus 4 ~iVI~l--GGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~~ 81 (316)
T PRK12352 4 LVVVAI--GGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANC 81 (316)
T ss_pred EEEEEE--ChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHHH
Confidence 467775 55555432 11122 3357899999999999999999999999822 22112221 23456666645
Q ss_pred HHHHHHH----HHHHHHHHHHHcCCce-------eEeehhchhh------------------------------------
Q psy13351 487 GMLATII----NSLALFDILNKSGIIS-------HVMSAISIEK------------------------------------ 519 (837)
Q Consensus 487 ~~~~~~~----~~~ll~~~L~~~gi~a-------~~l~~~~~~~------------------------------------ 519 (837)
.....+. ....|...|..+|..+ +.+++.|...
T Consensus 82 v~~~~g~i~~~i~~~L~~~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~ 161 (316)
T PRK12352 82 VADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGY 161 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCe
Confidence 5545543 3444566677777443 4445332210
Q ss_pred --------hhhccchHHHHHHHhCCCEEEEeCCCCCCC--------------CcchHHHHHHHHHcCCcEEEEeeccCcc
Q psy13351 520 --------FLESYIPLNAIKYLEEGKVVIFAGGIGNPF--------------FTTDTTAALRAAEIKAEIILKATKVDGI 577 (837)
Q Consensus 520 --------~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~--------------~s~D~lAa~lA~~L~Ad~liilTDVdGV 577 (837)
.++.++.+.|..+++.|+|||.+|+.|.|. +++|++|+.+|.+|+||+|+|+||||||
T Consensus 162 rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV 241 (316)
T PRK12352 162 RRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKV 241 (316)
T ss_pred EEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhh
Confidence 034567889999999999966665444331 4489999999999999999999999999
Q ss_pred ccCCCCCCCCceeccccCHHHHHH--------hccccchHHHHHHHHhCCC-CEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 578 YNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 578 y~~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~~a~~~gi-~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|+++|+ |++++|++++..|+.+ .|+|.+|+.||..+.+.|+ +++|++ ++.+.++|.|+ .||+|..
T Consensus 242 ~~d~~~--~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 242 CIHFGK--PQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK 315 (316)
T ss_pred ccCCCC--CCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence 988764 6788999999988755 3789999998865555555 788885 77799999998 8999974
|
|
| >cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=202.51 Aligned_cols=157 Identities=22% Similarity=0.296 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhh-------ccc---hHHHHHHHh--CCCEEEEeCCCCCC--C
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLE-------SYI---PLNAIKYLE--EGKVVIFAGGIGNP--F 549 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~-------~~~---~~~i~~ll~--~g~VPVv~G~~G~~--~ 549 (837)
+.+...+..+++.+|+.+|++.|+++..+++.++-.... .+. .+.+...+. .+.|||++||.|.. +
T Consensus 126 d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G 205 (306)
T cd04247 126 DLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGG 205 (306)
T ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEecCCCC
Confidence 344444444589999999999999999999877621100 111 111222222 57899999998843 2
Q ss_pred -Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCC
Q psy13351 550 -FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQK 619 (837)
Q Consensus 550 -~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~g 619 (837)
.+ +|++|+++|..|+|+.+++||||||||++||+.+|+|++|++++|+|+.+ +|++++||.|+.+|.+++
T Consensus 206 ~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~ 285 (306)
T cd04247 206 LLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKAR 285 (306)
T ss_pred CeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcC
Confidence 22 99999999999999999999999999999999999999999999999988 699999999999999999
Q ss_pred CCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 620 LPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 620 i~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
||++|.|.++|+ ..||+|.|.
T Consensus 286 Ipi~i~nt~~P~---------~~GT~I~~~ 306 (306)
T cd04247 286 IPIRIKNVENPR---------GEGTVIYPD 306 (306)
T ss_pred CcEEEecCCCCC---------CCCcEEcCC
Confidence 999999999884 579999763
|
Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. |
| >TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-20 Score=203.35 Aligned_cols=141 Identities=19% Similarity=0.235 Sum_probs=116.0
Q ss_pred HHHHHHcCCceeEeehhchhhh------------hhccchHHHHHHHhCCCEEEEeCCCCCC-C-C------cchHHHHH
Q psy13351 499 FDILNKSGIISHVMSAISIEKF------------LESYIPLNAIKYLEEGKVVIFAGGIGNP-F-F------TTDTTAAL 558 (837)
Q Consensus 499 ~~~L~~~gi~a~~l~~~~~~~~------------~~~~~~~~i~~ll~~g~VPVv~G~~G~~-~-~------s~D~lAa~ 558 (837)
++.|-..|+++..+++.++-.. ....+.+.+..+++.|.|||++|+.|+. + . ++|++|+.
T Consensus 108 Sa~Lla~gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~ 187 (327)
T TIGR02078 108 SAVIFAEGINGKVVDPWDIFFAKGDFGNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVA 187 (327)
T ss_pred HHHHHHccCCcEEEcHHHHhccCCcCCceeechhhhHhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHH
Confidence 3333345889999888765111 1123456777888999999999987743 1 1 38999999
Q ss_pred HHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHH
Q psy13351 559 RAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR 635 (837)
Q Consensus 559 lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~ 635 (837)
+|..|+||.+++||||||||++||+.+|+|+++++++++|+.+ .|++++|+.|+++|.++|+|++|.|.++|+
T Consensus 188 lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~~---- 263 (327)
T TIGR02078 188 LGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDWR---- 263 (327)
T ss_pred HHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCcC----
Confidence 9999999999999999999999999999999999999999876 677899999999999999999999998762
Q ss_pred HHcCCccceEEEEe
Q psy13351 636 VIEGKNEGTLVYEI 649 (837)
Q Consensus 636 al~Ge~~GT~I~~~ 649 (837)
.||+|+..
T Consensus 264 ------~GT~I~~~ 271 (327)
T TIGR02078 264 ------MGTLISNR 271 (327)
T ss_pred ------CCcEEecC
Confidence 59999754
|
This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between. |
| >PRK09034 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=212.07 Aligned_cols=266 Identities=17% Similarity=0.173 Sum_probs=180.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC--C-
Q psy13351 482 TADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP--F- 549 (837)
Q Consensus 482 ~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~--~- 549 (837)
..|.+...+..+++.+|+.+|+..|+++..+++.+++.. +.......+..++..+.|||++||.|.. +
T Consensus 111 ~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~ 190 (454)
T PRK09034 111 LLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQ 190 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCC
Confidence 344444444555899999999999999999999887332 1112345666666678899999998732 2
Q ss_pred C------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCC
Q psy13351 550 F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKL 620 (837)
Q Consensus 550 ~------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi 620 (837)
+ .+|+.|+.+|.+|+||.+.+||||||||++||+.+|+|+++++++|+|+.+ .|.+++||.|+.+|.++++
T Consensus 191 ~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~I 270 (454)
T PRK09034 191 IVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGI 270 (454)
T ss_pred EEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCC
Confidence 1 299999999999999999999999999999999999999999999999988 7999999999999999999
Q ss_pred CEEEEEccCcchHHHHHcCCccceEEEEeee----hhh------hhhh-hhHHH-hHHHHHHHHHHHHHhhhcCCCCccc
Q psy13351 621 PIRVFSIIKSGALKRVIEGKNEGTLVYEIYI----MII------SDIK-KNTKQ-KMLNTIKILKENLKKVRTGRANIGM 688 (837)
Q Consensus 621 ~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~----~v~------~~i~-~~~~~-~m~~~i~~~~~~l~~irtgr~~p~~ 688 (837)
|++|.|.++|+ ..||+|..... ..+ +.+. -.+.. .|......+.+=|.-+.....++.+
T Consensus 271 pi~v~~~~~p~---------~~GT~I~~~~~~~~~~~Vk~It~~~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~ 341 (454)
T PRK09034 271 PINIKNTNNPE---------DPGTLIVPDRDNKNKNPITGIAGDKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEH 341 (454)
T ss_pred CEEEEcCCCCC---------CCccEEEeccccCccccceEEEecCCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEE
Confidence 99999998873 56999986521 111 1110 01111 1333334444444445555666666
Q ss_pred cce----eEEEecccccc-------cce------eeeeeccCC-ceEEEe---c-CCcccHHHHHHHHHhcCCCcccee-
Q psy13351 689 LDN----IQVKYHEHLTK-------LLK------IANITLFNS-HTISIQ---P-FEKEMSSIIKKAINEANLGLNPTI- 745 (837)
Q Consensus 689 ld~----i~V~~~g~~~~-------L~~------lA~v~~~~~-~~l~i~---~-~d~~~~~~I~kaI~~s~l~~~p~~- 745 (837)
+.. +.+-....... +.+ ...|++.+. ..+.|. . -++.....+..++.+.++++.-..
T Consensus 342 i~ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq 421 (454)
T PRK09034 342 MPSGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ 421 (454)
T ss_pred EcCCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 633 44333322110 111 133444432 223331 1 246788889999987777664332
Q ss_pred --cCCeeEEeCCC
Q psy13351 746 --QGNIIYVSIPP 756 (837)
Q Consensus 746 --~~~~i~v~iP~ 756 (837)
....|.+.+|.
T Consensus 422 ~~Se~~Is~vV~~ 434 (454)
T PRK09034 422 GSSEISIMFGVKN 434 (454)
T ss_pred cCCcceEEEEEcH
Confidence 34567777765
|
|
| >PRK12354 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=200.82 Aligned_cols=224 Identities=22% Similarity=0.198 Sum_probs=159.6
Q ss_pred HHHHHhhhhhhhccC-CCcccc--ccchhhhhhhhHHhhhcCceEEEEeCcchh-h--hcccccccCCCcchHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKG-DAYNIN--SSIIKNIISEISEIVSCGIELAIVIGGGNI-C--RGISNKIQNIDRSTADYMGMLA 490 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g-~~~~i~--~~~i~~la~~I~~l~~~G~~vVIVhGGG~~-~--~~~~~~~~~~~~~~~~~~~~~~ 490 (837)
+|+++ +|+++... .+.... .+.++..|++|+++.+ ||++||+||+|.. . +.........++.+++.+.+..
T Consensus 3 iVial--GGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~s 79 (307)
T PRK12354 3 IVVAL--GGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAET 79 (307)
T ss_pred EEEEe--ccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhcccc
Confidence 35554 56666543 344555 3489999999999988 9999999999854 1 1111111122567888888888
Q ss_pred HHHHHHHHHHHHHHcC----CceeE----eehhc---------hhh---------------------------------h
Q psy13351 491 TIINSLALFDILNKSG----IISHV----MSAIS---------IEK---------------------------------F 520 (837)
Q Consensus 491 ~~~~~~ll~~~L~~~g----i~a~~----l~~~~---------~~~---------------------------------~ 520 (837)
.++.+++++..|.+.= +..+. +...+ ++. .
T Consensus 80 qg~iGy~l~q~l~~~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~g~rrVv~SP~P 159 (307)
T PRK12354 80 EGMIGYMLEQELGNLLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGDYFRRVVPSPRP 159 (307)
T ss_pred cchHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCCceEEEecCCCC
Confidence 8888888877753321 21111 11110 100 0
Q ss_pred hhccchHHHHHHHhCCCEEEEeCCCCCCC--------------CcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCC
Q psy13351 521 LESYIPLNAIKYLEEGKVVIFAGGIGNPF--------------FTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCL 586 (837)
Q Consensus 521 ~~~~~~~~i~~ll~~g~VPVv~G~~G~~~--------------~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~ 586 (837)
...++.+.+..++++|+|||.+|+.|.|. +++|++|++||..|+||.|+|+|||||||++++ .|
T Consensus 160 ~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p 237 (307)
T PRK12354 160 KRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KP 237 (307)
T ss_pred cceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CC
Confidence 11246788999999999988887666541 347999999999999999999999999999865 47
Q ss_pred CceeccccCHHHHHH----hccccchHHHHH-HHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 587 SAIIYKKITFDEVIS----KKLEIMDSTAFS-FCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 587 ~a~~I~~is~~e~~~----~G~~v~~~~Aa~-~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++++|++++.+++.+ .|+|.+|+.|+. ++.+.+.+++|. .++.+.++|.|+ .||+|.+.
T Consensus 238 ~~k~i~~it~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~---~~~~l~~al~G~-~GT~I~~~ 301 (307)
T PRK12354 238 TQRAIAQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIG---SLEDIQAILAGE-AGTRISPE 301 (307)
T ss_pred CCeECCCCCHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEEC---CHHHHHHHHCCC-CceEEecC
Confidence 899999999988876 689999999884 455556567764 356789999997 79999874
|
|
| >PRK09084 aspartate kinase III; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=211.80 Aligned_cols=157 Identities=22% Similarity=0.271 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhc-----c--------chHHHHHHHhCCCEEEEeCCCCCC-
Q psy13351 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLES-----Y--------IPLNAIKYLEEGKVVIFAGGIGNP- 548 (837)
Q Consensus 483 ~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~-----~--------~~~~i~~ll~~g~VPVv~G~~G~~- 548 (837)
.+.+...+..+++.+++.+|...|+++..+++.++-..... . ....+.++++.+ |||++||.|..
T Consensus 109 ~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~ 187 (448)
T PRK09084 109 TDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRFGRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDE 187 (448)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCCCcccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCC
Confidence 34444444445899999999999999999998775111000 0 113445556777 99999987742
Q ss_pred -CC-------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHh
Q psy13351 549 -FF-------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRD 617 (837)
Q Consensus 549 -~~-------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~ 617 (837)
+. .+|++|+++|..|+||.+++|||||||||+||+.+|+|+++++++|+|+.+ .|++++||.+..+|.+
T Consensus 188 ~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~ 267 (448)
T PRK09084 188 KGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVR 267 (448)
T ss_pred CCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 21 289999999999999999999999999999999999999999999999988 7999999999999999
Q ss_pred CCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 618 QKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 618 ~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
+++|++|.|+.+|+ ..||+|.+.
T Consensus 268 ~~i~i~i~~~~~~~---------~~GT~I~~~ 290 (448)
T PRK09084 268 SNIPVFVGSSKDPE---------AGGTWICND 290 (448)
T ss_pred cCCcEEEEeCCCCC---------CCceEEecC
Confidence 99999999999884 479999754
|
|
| >TIGR00761 argB acetylglutamate kinase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=197.95 Aligned_cols=178 Identities=21% Similarity=0.197 Sum_probs=138.3
Q ss_pred hhhhhhhhHHhhhcCceEEEEeCcchhhhcc---cccc----cC---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy13351 441 IKNIISEISEIVSCGIELAIVIGGGNICRGI---SNKI----QN---IDRSTADYMGMLATIINSLALFDILNKSGIISH 510 (837)
Q Consensus 441 i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~---~~~~----~~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 510 (837)
+.+++++|+.+++.|.++|||||||...... .... .+ .++..++...++..+..+..+.+.|..+|++++
T Consensus 15 ~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~~~i~~~L~~~G~~a~ 94 (231)
T TIGR00761 15 LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVNKELVALLNKHGINAI 94 (231)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchHHHHHHHHHhCCCCcc
Confidence 8899999999999999999999998443221 1111 11 233444555555554555667779999999999
Q ss_pred Eeehhchhhh---------------hhccchHHHHHHHhCCCEEEEeCCCCCC------CCcchHHHHHHHHHcCCcEEE
Q psy13351 511 VMSAISIEKF---------------LESYIPLNAIKYLEEGKVVIFAGGIGNP------FFTTDTTAALRAAEIKAEIIL 569 (837)
Q Consensus 511 ~l~~~~~~~~---------------~~~~~~~~i~~ll~~g~VPVv~G~~G~~------~~s~D~lAa~lA~~L~Ad~li 569 (837)
++++.+.+.+ +..++.+.+..++++|+|||++|. |.+ ++++|++|+.+|..|+||+|+
T Consensus 95 ~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~-~~~~~g~~~~l~sD~~A~~lA~~l~A~~li 173 (231)
T TIGR00761 95 GLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSL-ALTAEGQALNVNADTAAGALAAALGAEKLV 173 (231)
T ss_pred cccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCC-ccCCCCcEEEeCHHHHHHHHHHHcCCCEEE
Confidence 9988864221 344678899999999999999983 321 356999999999999999999
Q ss_pred EeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhCCCCEEE
Q psy13351 570 KATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLPIRV 624 (837)
Q Consensus 570 ilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I 624 (837)
|+|||||||++||+ ++|++++++|+.+ .|+|..|+.++..|.+.|++.+.
T Consensus 174 ~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v~ 230 (231)
T TIGR00761 174 LLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVH 230 (231)
T ss_pred EEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEEE
Confidence 99999999999873 6899999877655 58999999999999999997553
|
This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model. |
| >PRK09411 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-20 Score=194.66 Aligned_cols=216 Identities=21% Similarity=0.230 Sum_probs=163.7
Q ss_pred hhhhhccC-CCcccccc--chhhhhhhhHHhhhcCceEEEEeCcc----hhhhcccccccCCCcchHHHHHHHHHHHHHH
Q psy13351 424 LGEALMKG-DAYNINSS--IIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGMLATIINSL 496 (837)
Q Consensus 424 ~gs~~~~g-~~~~i~~~--~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (837)
+|.++... .+.....+ .++..|+.|+.+.+. |++||+||.| ......... ...++.+++.+++...|+.++
T Consensus 9 GGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~-~~~~~~pld~~~a~sqG~iGy 86 (297)
T PRK09411 9 GGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAW-KEVEPYPLDVLVAESQGMIGY 86 (297)
T ss_pred CchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhh-cCCCCCCchhhhhhcccHHHH
Confidence 55555542 23344444 788899999999887 9999999986 444432222 233788999999999999999
Q ss_pred HHHHHHHHcCCceeEe--------ehhch---------h---------------------------h------hhhccch
Q psy13351 497 ALFDILNKSGIISHVM--------SAISI---------E---------------------------K------FLESYIP 526 (837)
Q Consensus 497 ll~~~L~~~gi~a~~l--------~~~~~---------~---------------------------~------~~~~~~~ 526 (837)
+|+..|.+.++..-.. ++.|- + . ....++.
T Consensus 87 ~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~P~~iVe~ 166 (297)
T PRK09411 87 MLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDS 166 (297)
T ss_pred HHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCCCcceECH
Confidence 9999998887543111 11110 0 0 0133577
Q ss_pred HHHHHHHhCCCEEEEeCCCCCC----------CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCH
Q psy13351 527 LNAIKYLEEGKVVIFAGGIGNP----------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF 596 (837)
Q Consensus 527 ~~i~~ll~~g~VPVv~G~~G~~----------~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~ 596 (837)
+.|..++++|.|||.+|+.|.| ++++|++|+.||..|+||+|+|+|||||||++++ .|++++|++++.
T Consensus 167 ~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I~~it~ 244 (297)
T PRK09411 167 EAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAIRHATP 244 (297)
T ss_pred HHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCCCCcCH
Confidence 8999999999998888765544 2459999999999999999999999999998764 478899999999
Q ss_pred HHHHH----hccccchHHHH-HHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 597 DEVIS----KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 597 ~e~~~----~G~~v~~~~Aa-~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
+++.. .|+|.+|+.|+ +++.+.|.+++|.+ ++.+.+++.|+ .||+|.
T Consensus 245 ~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 245 DELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRIEETLAGE-AGTCIS 296 (297)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence 88865 68999999987 66676777887753 66788999998 799985
|
|
| >cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-20 Score=196.71 Aligned_cols=214 Identities=18% Similarity=0.162 Sum_probs=158.8
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc---cccc----C---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS---NKIQ----N---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~---~~~~----~---~~~~~~~ 484 (837)
+++++|+ .|+++. + +.+++++++|+.+.+.|+++|||||||.....+. .... + .++..++
T Consensus 19 ~~~VIKl--GG~ai~-~-------~~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~~l~ 88 (280)
T cd04237 19 KTFVIAF--GGEAVA-H-------PNFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAALE 88 (280)
T ss_pred CEEEEEE--ChHHhc-C-------chHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHHHHH
Confidence 4678884 444432 1 2457899999999999999999999994443322 1211 1 2556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehh-----chh------------------hhhhccchHHHHHHHhCCCEEEE
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAI-----SIE------------------KFLESYIPLNAIKYLEEGKVVIF 541 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~-----~~~------------------~~~~~~~~~~i~~ll~~g~VPVv 541 (837)
...++ .+..+..+.+.|+. |++++++++. +.. ..+..++.+.+..++++|++||+
T Consensus 89 ~~~~~-~g~v~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~ 166 (280)
T cd04237 89 CVKEA-AGAVRLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLL 166 (280)
T ss_pred HHHHH-HHHHHHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEE
Confidence 76666 46677778888855 8877654321 110 01344688999999999999999
Q ss_pred eCCC----CCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH--------hccccch
Q psy13351 542 AGGI----GNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMD 608 (837)
Q Consensus 542 ~G~~----G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~ 608 (837)
++.. |.. ++++|.+|+.||..|+|++|+|+|||||||++ +++++++++.+++.+ .|+|.+|
T Consensus 167 ~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~K 240 (280)
T cd04237 167 SPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARL 240 (280)
T ss_pred CCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHH
Confidence 8721 111 46799999999999999999999999999974 357889998766654 4889999
Q ss_pred HHHHHHHHhCCC-CEEEEEccCcchHHHHHc-CCccceEE
Q psy13351 609 STAFSFCRDQKL-PIRVFSIIKSGALKRVIE-GKNEGTLV 646 (837)
Q Consensus 609 ~~Aa~~a~~~gi-~v~I~ng~~~~~i~~al~-Ge~~GT~I 646 (837)
++++..+.+.|+ +++|+++..|+.+...|. .+..||+|
T Consensus 241 v~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 241 LQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 999999899999 799999999999887554 55689975
|
Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=209.66 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHH-hCCCEEEEeCCCCCC--C-C
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYL-EEGKVVIFAGGIGNP--F-F 550 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~i~~ll-~~g~VPVv~G~~G~~--~-~ 550 (837)
+.+...+..+++.+|+.+|.+.|+++..+++.++-.. ........+.+++ +.+.|||++||.|.. + .
T Consensus 120 d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ 199 (819)
T PRK09436 120 AAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGEL 199 (819)
T ss_pred hheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCE
Confidence 3333344445789999999999999999988765111 0112234555554 468999999987732 1 1
Q ss_pred c------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 551 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 551 s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+ +|++|+++|..|+||.+++|||||||||+||+.+|+|++|++++|+|+.+ .|.+++|+.|+.+|.++|+|
T Consensus 200 ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ip 279 (819)
T PRK09436 200 VTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIP 279 (819)
T ss_pred EEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCce
Confidence 1 89999999999999999999999999999999999999999999999987 69999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++|.|+++|+ ..||+|+.+
T Consensus 280 i~i~n~~~p~---------~~GT~I~~~ 298 (819)
T PRK09436 280 CLIKNTFNPQ---------APGTLIGAE 298 (819)
T ss_pred EEEccCCCCC---------CCceEEEec
Confidence 9999999884 469999764
|
|
| >PRK05925 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-19 Score=202.29 Aligned_cols=158 Identities=21% Similarity=0.194 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhh-----hccchH----HHHH-HHhCCCEEEEeCCCCCC--C-
Q psy13351 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFL-----ESYIPL----NAIK-YLEEGKVVIFAGGIGNP--F- 549 (837)
Q Consensus 483 ~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~-----~~~~~~----~i~~-ll~~g~VPVv~G~~G~~--~- 549 (837)
.+.+...+..+++.+|+.+|+..|+++..+++.++-... ...+.. .+.. .+..+.|||++||.|.. +
T Consensus 102 ~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~ 181 (440)
T PRK05925 102 QARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQGFIGANSSGK 181 (440)
T ss_pred hhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccCHHHHHHHHHHhhccCCcEEEecCcceeCCCCC
Confidence 344444444458999999999999999999997751110 011112 2222 34567899999998742 2
Q ss_pred Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCC
Q psy13351 550 FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKL 620 (837)
Q Consensus 550 ~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi 620 (837)
++ ||++|+++|.+|+||.+++|||||||||+||+.+|+|++|++++++|+.+ .|..+.++.++++|.++|+
T Consensus 182 ~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~I 261 (440)
T PRK05925 182 TTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGI 261 (440)
T ss_pred EEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCC
Confidence 11 99999999999999999999999999999999999999999999999877 6899999999999999999
Q ss_pred CEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 621 PIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 621 ~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
|++|.|+++|+ +.||+|.+.
T Consensus 262 pi~I~~~~~p~---------~~GT~i~~~ 281 (440)
T PRK05925 262 PIFVTSTFDVT---------KGGTWIYAS 281 (440)
T ss_pred cEEEecCCCCC---------CCccEEecC
Confidence 99999999985 479999763
|
|
| >PRK05279 N-acetylglutamate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=207.79 Aligned_cols=217 Identities=18% Similarity=0.159 Sum_probs=162.1
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc---cccc----C---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS---NKIQ----N---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~---~~~~----~---~~~~~~~ 484 (837)
+++|+|. +|+++ .. +.+++++.+|+.+.+.|.++|||||||.....+. .... + .++..++
T Consensus 26 ~~~VIk~--GG~~l-~~-------~~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~ 95 (441)
T PRK05279 26 KTFVIML--GGEAI-AH-------GNFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAAALE 95 (441)
T ss_pred CEEEEEE--Cchhc-cC-------hhHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHHHHH
Confidence 4678884 34433 22 1357899999999999999999999994433222 1111 1 2556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhch-----h------------------hhhhccchHHHHHHHhCCCEEEE
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISI-----E------------------KFLESYIPLNAIKYLEEGKVVIF 541 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~-----~------------------~~~~~~~~~~i~~ll~~g~VPVv 541 (837)
...++ .+..+..+.+.|+. |++++++++.++ . ..+..++.+.+..++++|+|||+
T Consensus 96 ~~~~~-~g~v~~~l~~~l~~-g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~ 173 (441)
T PRK05279 96 CVKQA-AGELRLDIEARLSM-GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLL 173 (441)
T ss_pred HHHHH-HHHHHHHHHHHHhc-cCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEE
Confidence 77776 46778888888854 888877544321 0 01334678999999999999999
Q ss_pred eCC----CCC-CCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH----------hcccc
Q psy13351 542 AGG----IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEI 606 (837)
Q Consensus 542 ~G~----~G~-~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~----------~G~~v 606 (837)
++. .|. -++++|++|+.||..|+||+|+|+|||||||++ ++++|++++.+++.+ .|+|.
T Consensus 174 ~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~ 247 (441)
T PRK05279 174 SPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTA 247 (441)
T ss_pred CCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHH
Confidence 762 121 146899999999999999999999999999953 367889998766543 48999
Q ss_pred chHHHHHHHHhCCC-CEEEEEccCcchHHHHHcCC-ccceEEEEe
Q psy13351 607 MDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGK-NEGTLVYEI 649 (837)
Q Consensus 607 ~~~~Aa~~a~~~gi-~v~I~ng~~~~~i~~al~Ge-~~GT~I~~~ 649 (837)
.|+.++..+.+.|+ +++|+++..|+++...|.++ ..||+|+++
T Consensus 248 ~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~ 292 (441)
T PRK05279 248 RFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME 292 (441)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence 99999888888899 79999999999999887765 479999986
|
|
| >cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=189.60 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=146.3
Q ss_pred hhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---ccc----C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy13351 441 IKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH 510 (837)
Q Consensus 441 i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~----~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 510 (837)
+++++++|+.|...|.++|||||||........ ... + .++..++...++.. ..+..+.+.|.++|++++
T Consensus 14 l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~-~vn~~iv~~l~~~g~~a~ 92 (248)
T cd04252 14 LDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFL-EENLKLVEALERNGARAR 92 (248)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHH-HHHHHHHHHHHhCCCCcc
Confidence 788999999998889999999999955443332 221 1 25566677776655 566678888999999999
Q ss_pred Eeehhchh------------hhhhccchHHHHHHHhCCCEEEEeCC----CCC-CCCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 511 VMSAISIE------------KFLESYIPLNAIKYLEEGKVVIFAGG----IGN-PFFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 511 ~l~~~~~~------------~~~~~~~~~~i~~ll~~g~VPVv~G~----~G~-~~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
++++..+. ..+..++.+.+..+|+.|+|||++|. .|. -++++|.+|+.+|..|+|++|+|+||
T Consensus 93 ~l~~~~~~a~~~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltd 172 (248)
T cd04252 93 PITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNE 172 (248)
T ss_pred cccCceEEEEECcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEEC
Confidence 98874221 01345788999999999999999982 221 24679999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHH-HH---HH----hccccchHHHHHHHHhC--C-CCEEEEEccCcchHHHHHcC-Cc
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFD-EV---IS----KKLEIMDSTAFSFCRDQ--K-LPIRVFSIIKSGALKRVIEG-KN 641 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~-e~---~~----~G~~v~~~~Aa~~a~~~--g-i~v~I~ng~~~~~i~~al~G-e~ 641 (837)
|||||++ +.++|++++.. +. .+ +|+|..|+.++..+.+. + ..++|++ ++.+...|.+ +.
T Consensus 173 v~GV~~~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g 243 (248)
T cd04252 173 TGGLLDG------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSG 243 (248)
T ss_pred CcccCCC------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCC
Confidence 9999975 24678888753 33 22 68999999988888776 3 3566665 5677665554 45
Q ss_pred cceEE
Q psy13351 642 EGTLV 646 (837)
Q Consensus 642 ~GT~I 646 (837)
.||+|
T Consensus 244 ~GT~i 248 (248)
T cd04252 244 AGTLI 248 (248)
T ss_pred CCccC
Confidence 89975
|
The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th |
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-19 Score=215.18 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh--------hhccchHHHHHHHhC--CCEEEEeCCCCCC--C-C
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF--------LESYIPLNAIKYLEE--GKVVIFAGGIGNP--F-F 550 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~--------~~~~~~~~i~~ll~~--g~VPVv~G~~G~~--~-~ 550 (837)
|.+...+..+++.+|+.+|+..|+++..+++.++-.. ........+..++.. +.|||++||+|.. + +
T Consensus 123 d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ 202 (810)
T PRK09466 123 AEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGET 202 (810)
T ss_pred hheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecCCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCE
Confidence 3333344445799999999999999999998775111 111134567776654 3899999998743 2 2
Q ss_pred c------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 551 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 551 s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+ +|++|+.+|..|+|+.+.+||||||||++||+.+|+|++|++++|+|+.+ +|++++||.|.++|.+++||
T Consensus 203 ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ip 282 (810)
T PRK09466 203 VLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDID 282 (810)
T ss_pred EEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCe
Confidence 2 89999999999999999999999999999999999999999999999988 89999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
++|.|.++|+ ..||+|..
T Consensus 283 i~V~ntf~p~---------~~GT~I~~ 300 (810)
T PRK09466 283 LQLRCSYQPE---------QGSTRIER 300 (810)
T ss_pred EEEecCCCCC---------CCceEEec
Confidence 9999999874 57999975
|
|
| >TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=197.78 Aligned_cols=218 Identities=19% Similarity=0.198 Sum_probs=160.5
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcc---ccccc-------CCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGI---SNKIQ-------NIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~---~~~~~-------~~~~~~~~ 484 (837)
+.+|+| .|++.+.+ +.+.+++++|+.|...|.++|||||||.....+ ..... -.++..++
T Consensus 18 ~~~ViK---~GG~~~~~-------~~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~ 87 (429)
T TIGR01890 18 KTFVVG---LGGELVEG-------GNLGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEASLE 87 (429)
T ss_pred CEEEEE---EChhhccC-------ccHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHH
Confidence 456788 44443322 123589999999999999999999999443322 22221 23677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeE-----eehhchh----------------hh--hhccchHHHHHHHhCCCEEEE
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHV-----MSAISIE----------------KF--LESYIPLNAIKYLEEGKVVIF 541 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~-----l~~~~~~----------------~~--~~~~~~~~i~~ll~~g~VPVv 541 (837)
...++ ++..+..|++.|... +++++ +++.+.+ .. +..++.+.+..+++.|+|||+
T Consensus 88 ~~~~~-~g~vn~~l~~~l~~~-~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi 165 (429)
T TIGR01890 88 QAQQA-AGTLRLAIEARLSMS-LSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLL 165 (429)
T ss_pred HHHHH-hChHHHHHHHHHHhc-CCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEE
Confidence 88876 777778888888776 44333 3443321 11 345688999999999999999
Q ss_pred eC-CC---CC-CCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-----hcc-ccchHH
Q psy13351 542 AG-GI---GN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKL-EIMDST 610 (837)
Q Consensus 542 ~G-~~---G~-~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-----~G~-~v~~~~ 610 (837)
++ +. |. -++++|++|+.||.+|+|++|+|+|||||||++ ++++|++++.+++.+ .|+ |..++.
T Consensus 166 ~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~ 239 (429)
T TIGR01890 166 SPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRRLLS 239 (429)
T ss_pred CCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHH
Confidence 87 22 21 257799999999999999999999999999964 256889998766644 244 589999
Q ss_pred HHHHHHhCCC-CEEEEEccCcchHHHHH-cCCccceEEEEee
Q psy13351 611 AFSFCRDQKL-PIRVFSIIKSGALKRVI-EGKNEGTLVYEIY 650 (837)
Q Consensus 611 Aa~~a~~~gi-~v~I~ng~~~~~i~~al-~Ge~~GT~I~~~~ 650 (837)
++..|.+.|+ +++|++|..|+.+...| ..+..||+|+.+.
T Consensus 240 ~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~ 281 (429)
T TIGR01890 240 AAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEA 281 (429)
T ss_pred HHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccc
Confidence 9999999996 68999999999988766 4566899999863
|
This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate. |
| >cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=184.43 Aligned_cols=195 Identities=11% Similarity=0.074 Sum_probs=149.4
Q ss_pred ccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehh
Q psy13351 436 INSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAI 515 (837)
Q Consensus 436 i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~ 515 (837)
.+++.++.+++.|+.|...|.++|||||||........ . .......++.. ..+..|+..|+.+|++++++++.
T Consensus 48 ~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~-~-----~~~~~~~~v~~-~~n~~Lv~~L~~~G~~A~gl~g~ 120 (271)
T cd04236 48 RSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS-D-----LELQAARSRLV-KDCKTLVEALQANSAAAHPLFSG 120 (271)
T ss_pred cCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc-C-----CcchheehhHH-HHHHHHHHHHHhCCCCeeeecCc
Confidence 35678899999999999999999999999965443222 1 11222333333 45677888999999999999886
Q ss_pred ch----------h--hhhhccchHHHHHHHhCCCEEEEeCC----CCC-CCCcchHHHHHHHHHcCCcEEEEeeccCccc
Q psy13351 516 SI----------E--KFLESYIPLNAIKYLEEGKVVIFAGG----IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIY 578 (837)
Q Consensus 516 ~~----------~--~~~~~~~~~~i~~ll~~g~VPVv~G~----~G~-~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy 578 (837)
.. + ..+..++.+.+..+++.|.|||+++. .|. -++++|++|+.+|.+|+|++|+|+|||+|||
T Consensus 121 ~~~i~a~~~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~ 200 (271)
T cd04236 121 ESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLR 200 (271)
T ss_pred cceEEEEEcccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceE
Confidence 31 0 01355789999999999999999981 111 1467999999999999999999999999999
Q ss_pred cCCCCCCCCceeccccCH-HHHHH-------hccc---cchHHHHHHHHhCCCCEEEEEccCcchH-HHHHcCCccceEE
Q psy13351 579 NSDPNKCLSAIIYKKITF-DEVIS-------KKLE---IMDSTAFSFCRDQKLPIRVFSIIKSGAL-KRVIEGKNEGTLV 646 (837)
Q Consensus 579 ~~dP~~~~~a~~I~~is~-~e~~~-------~G~~---v~~~~Aa~~a~~~gi~v~I~ng~~~~~i-~~al~Ge~~GT~I 646 (837)
+++ .++|++++. +|+.+ .||| +.++.++.-+...|++|+|++ |+.+ .+++.....||+|
T Consensus 201 ~~~------g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 201 DQK------HKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred CCC------CCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHHHHHHHhccCCCCCcC
Confidence 742 468888884 55543 6888 888889988899999988886 5554 4577777789986
|
Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF). |
| >PRK09181 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=191.67 Aligned_cols=225 Identities=12% Similarity=0.120 Sum_probs=160.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHh----CCCEEEEeCCCCCCC--Cc-
Q psy13351 479 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLE----EGKVVIFAGGIGNPF--FT- 551 (837)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~----~g~VPVv~G~~G~~~--~s- 551 (837)
++...|.+...+..+++.+|+.+|...|+++..+++..............+...+. .+.|||++||.|.+. ++
T Consensus 135 ~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itT 214 (475)
T PRK09181 135 LLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRT 214 (475)
T ss_pred ChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEe
Confidence 44455555555555689999999999999999866533211111113456666665 478999999875432 22
Q ss_pred -----chHHHHHHHHHcCCcEEEEeeccCccccCCCCCC--CCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 552 -----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC--LSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 552 -----~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~--~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+|++|+.+|.+|+||.+.+||||+ ||++||+.. |+|++|++++|+|+.+ +|++++||.|.++|.+++||
T Consensus 215 LGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ip 293 (475)
T PRK09181 215 FDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIP 293 (475)
T ss_pred cCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCe
Confidence 999999999999999999999997 999999999 6999999999999988 79999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEEEeeehhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEeccccc
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLT 701 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~ 701 (837)
++|.|.++|+ ..||+|.++..+. + . .++.- .
T Consensus 294 i~V~nt~~p~---------~~GT~I~~~~~~~----------------------------~----~---~ik~I-----t 324 (475)
T PRK09181 294 LRIKNTFEPE---------HPGTLITKDYVSE----------------------------Q----P---RVEII-----A 324 (475)
T ss_pred EEEecCCCCC---------CCCeEEecCcccc----------------------------c----c---cceeE-----e
Confidence 9999999874 5799997531100 0 0 01110 1
Q ss_pred ccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCcccee-cCCeeEEeCCCC
Q psy13351 702 KLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTI-QGNIIYVSIPPL 757 (837)
Q Consensus 702 ~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~p~~-~~~~i~v~iP~~ 757 (837)
-...++.|++.+..++- .+.....|..++.+.+.++.-+. ....|.+.++.-
T Consensus 325 ~~~~~~~i~i~~~~~~~----~~g~~~~if~~l~~~~i~v~~i~ss~~sis~~v~~~ 377 (475)
T PRK09181 325 GSDKVFALEVFDQDMVG----EDGYDLEILEILTRHKVSYISKATNANTITHYLWGS 377 (475)
T ss_pred ccCCEEEEEEcCCCCCC----cchHHHHHHHHHHHcCCeEEEEEecCcEEEEEEcCC
Confidence 12245666555443222 35566677788887776665443 235777777664
|
|
| >COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=177.07 Aligned_cols=219 Identities=23% Similarity=0.288 Sum_probs=166.1
Q ss_pred hhhhhccCCC---ccccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhccccc--ccCCCcchHHHHHHHHHHHH
Q psy13351 424 LGEALMKGDA---YNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNK--IQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 424 ~gs~~~~g~~---~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 494 (837)
+|.++..+++ .....+.++..+++|+.+.++|+++||.||.| ..+.+.... ..+.++.+++.++++..++.
T Consensus 8 GGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~AmsQG~I 87 (312)
T COG0549 8 GGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLVAMSQGMI 87 (312)
T ss_pred cchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHhHhhhhHH
Confidence 5566665433 33456678899999999999999999999986 444432221 23467789999999999999
Q ss_pred HHHHHHH----HHHcCCc---eeEee-----hhch---------h----------------------------hh-----
Q psy13351 495 SLALFDI----LNKSGII---SHVMS-----AISI---------E----------------------------KF----- 520 (837)
Q Consensus 495 ~~ll~~~----L~~~gi~---a~~l~-----~~~~---------~----------------------------~~----- 520 (837)
+++|+.. |...|+. +..++ ..|- + .+
T Consensus 88 Gy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~RRVVpSP~ 167 (312)
T COG0549 88 GYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYRRVVPSPK 167 (312)
T ss_pred HHHHHHHHHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCeeEecCCCC
Confidence 9998877 4555642 11111 1110 0 00
Q ss_pred -hhccchHHHHHHHhCCCEEEEeCCCCCCCC-------------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCC
Q psy13351 521 -LESYIPLNAIKYLEEGKVVIFAGGIGNPFF-------------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCL 586 (837)
Q Consensus 521 -~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~-------------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~ 586 (837)
.+-+..+.|..++++|.++|.+|+.|.|.+ .-|..|+.||..++||.|+|+||||+||-...+ |
T Consensus 168 P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gk--p 245 (312)
T COG0549 168 PVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGK--P 245 (312)
T ss_pred CccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCC--c
Confidence 112356789999999999999998887742 279999999999999999999999999999876 7
Q ss_pred CceeccccCHHHHHH--------hccccchHHH-HHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 587 SAIIYKKITFDEVIS--------KKLEIMDSTA-FSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 587 ~a~~I~~is~~e~~~--------~G~~v~~~~A-a~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
+.+.|++++.+|+.+ -|+|.+|++| +.++++.|.+.+|.+ .+++.++|.|+ .||.|++
T Consensus 246 ~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312)
T COG0549 246 NQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP 312 (312)
T ss_pred cchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence 889999999999765 5889999975 578888888888875 45688899997 7999964
|
|
| >PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-18 Score=211.95 Aligned_cols=152 Identities=20% Similarity=0.268 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEeehhchhhhhh-------------c----cchHHHHHHHhCC-CEEEEeCCCCCC--
Q psy13351 489 LATIINSLALFDILNKSGIISHVMSAISIEKFLE-------------S----YIPLNAIKYLEEG-KVVIFAGGIGNP-- 548 (837)
Q Consensus 489 ~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~-------------~----~~~~~i~~ll~~g-~VPVv~G~~G~~-- 548 (837)
.+..+++.+|+.+|++.|+++..+++.++..... . .+...+..++..+ .|||++||.|..
T Consensus 125 ~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~ 204 (861)
T PRK08961 125 QGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARNAD 204 (861)
T ss_pred ehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeCCC
Confidence 3344578899999999999999999876521100 0 1223444555554 599999998743
Q ss_pred C-Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhC
Q psy13351 549 F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQ 618 (837)
Q Consensus 549 ~-~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~ 618 (837)
+ ++ +|++|+.+|..|+||.+++|||||||||+||+.+|+|++|++++++|+.+ .|++++|+.|+++|.++
T Consensus 205 g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~ 284 (861)
T PRK08961 205 GGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDA 284 (861)
T ss_pred CCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHC
Confidence 2 11 99999999999999999999999999999999999999999999999876 79999999999999999
Q ss_pred CCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 619 KLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 619 gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
|||++|.|+.+|+ ..||+|.++
T Consensus 285 ~i~i~v~~~~~~~---------~~gT~I~~~ 306 (861)
T PRK08961 285 GIPMAILDTERPD---------LSGTSIDGD 306 (861)
T ss_pred CCCEEEEeCCCCC---------CCccEEeCC
Confidence 9999999998873 469999754
|
|
| >cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=176.36 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=127.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHh----CCCEEEEeCCCCCC-C-Cc-
Q psy13351 479 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLE----EGKVVIFAGGIGNP-F-FT- 551 (837)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~----~g~VPVv~G~~G~~-~-~s- 551 (837)
.+...+.+...+...++.+++.+|+..|+++..++...............+.+.+. .+.|||++||.+.. + ++
T Consensus 129 ~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itT 208 (304)
T cd04248 129 LLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMRE 208 (304)
T ss_pred CHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEE
Confidence 45566666666666689999999999999998855443221101112344444444 57899999986533 1 22
Q ss_pred -----chHHHHHHHHHcCCcEEEEeeccCccccCCCCCC--CCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 552 -----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC--LSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 552 -----~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~--~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+|+.|+.+|.+|+|+.+.|||||+ ||++||+.+ |+|+.|++++|+|+.+ .|++++||.|+++|.+++||
T Consensus 209 LGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IP 287 (304)
T cd04248 209 FDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIP 287 (304)
T ss_pred cCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCe
Confidence 999999999999999999999996 999999999 6899999999999988 79999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEE
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++|.|.++|+ ..||+|+
T Consensus 288 i~Vkntf~P~---------~~GTlIt 304 (304)
T cd04248 288 LRVKNTFEPD---------HPGTLIT 304 (304)
T ss_pred EEEecCCCCC---------CCCceeC
Confidence 9999999884 5799984
|
Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. |
| >KOG0456|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-16 Score=163.96 Aligned_cols=277 Identities=17% Similarity=0.259 Sum_probs=194.1
Q ss_pred CCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy13351 432 DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 511 (837)
Q Consensus 432 ~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 511 (837)
....+++.++..+.+.+.++.+. .....+++..+.|+...++..++.++++++|+..|.++..
T Consensus 158 ~e~~~d~~v~~~~le~leq~Lk~-----------------i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~ 220 (559)
T KOG0456|consen 158 HELIVDPAVIAKLLEGLEQLLKG-----------------IAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQ 220 (559)
T ss_pred HHhccCHHHHHHHHHHHHHHHHH-----------------HHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCcccee
Confidence 44456677777777776665431 1122355778889988888889999999999999999988
Q ss_pred eehhchhhhhh----------ccchHHHHHH----HhCCCEEEEeCCCCC--CC--Cc------chHHHHHHHHHcCCcE
Q psy13351 512 MSAISIEKFLE----------SYIPLNAIKY----LEEGKVVIFAGGIGN--PF--FT------TDTTAALRAAEIKAEI 567 (837)
Q Consensus 512 l~~~~~~~~~~----------~~~~~~i~~l----l~~g~VPVv~G~~G~--~~--~s------~D~lAa~lA~~L~Ad~ 567 (837)
+..+.++.... .+-+.....+ ...+.|||+.||.|. |. ++ +|..|+.+|.+|++|.
T Consensus 221 ~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~E 300 (559)
T KOG0456|consen 221 YDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDE 300 (559)
T ss_pred echhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchh
Confidence 87766533211 1111111111 235799999998773 21 22 8999999999999999
Q ss_pred EEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccce
Q psy13351 568 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT 644 (837)
Q Consensus 568 liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT 644 (837)
+-+|.|||||+|+||++.|.|++++.++++|+.+ +|..++||...+.+.+..||+.|-|..+|- .+||
T Consensus 301 iQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~---------~~GT 371 (559)
T KOG0456|consen 301 IQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPT---------APGT 371 (559)
T ss_pred hhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCC---------CCce
Confidence 9999999999999999999999999999999988 899999999999999999999999999883 5799
Q ss_pred EEEEeeehhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCc
Q psy13351 645 LVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEK 724 (837)
Q Consensus 645 ~I~~~~~~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~ 724 (837)
+|.|+..|. ..|-.+.-+=++|.+ +.+-+.|++.=.
T Consensus 372 vI~~d~~m~--------------------------k~~~TsI~lK~nv~m--------------ldI~Str~l~q~---- 407 (559)
T KOG0456|consen 372 VITPDRDMS--------------------------KAGLTSIVLKRNVTM--------------LDIASTRMLGQH---- 407 (559)
T ss_pred Eeccchhhh--------------------------hccceEEEEeccEEE--------------EEecccchhhhh----
Confidence 999863211 112222222233332 111122222211
Q ss_pred ccHHHHHHHHHhcCCCcccee-cCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13351 725 EMSSIIKKAINEANLGLNPTI-QGNIIYVSIPPLTKERREEIVKLIKNITEETKI 778 (837)
Q Consensus 725 ~~~~~I~kaI~~s~l~~~p~~-~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~ 778 (837)
..+..|..-+.+-++-+.... ..-.|...+|+..-..|+-+.+...+..|+-+.
T Consensus 408 GFLAkvFti~ek~~isVDvvaTSEV~iSltL~~~~~~sreliq~~l~~a~eeL~k 462 (559)
T KOG0456|consen 408 GFLAKVFTIFEKLGISVDVVATSEVSISLTLDPSKLDSRELIQGELDQAVEELEK 462 (559)
T ss_pred hHHHHHHHHHHHhCcEEEEEEeeeEEEEEecChhhhhhHHHHHhhHHHHHHHHHH
Confidence 234455443443344444443 445899999999999999888888877777543
|
|
| >PRK04531 acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-16 Score=172.30 Aligned_cols=191 Identities=17% Similarity=0.172 Sum_probs=136.1
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc---cccc----C---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS---NKIQ----N---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~---~~~~----~---~~~~~~~ 484 (837)
+.+|+| .|++.+.+ .++.++++|+.|...|.++|||||||....... +... + .++.+++
T Consensus 37 ~~~VIK---iGG~~l~~--------~~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~ 105 (398)
T PRK04531 37 RFAVIK---VGGAVLRD--------DLEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALA 105 (398)
T ss_pred cEEEEE---EChHHhhc--------CHHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHH
Confidence 456778 44444322 258899999999999999999999994433222 2211 1 3556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHH
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALR 559 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~----~G~~-~~s~D~lAa~l 559 (837)
...++.. ..+.-|+.. +..+++.|.|||+++. .|.. ++++|.+|+.+
T Consensus 106 vv~~~l~-~vn~~lv~~---------------------------I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~L 157 (398)
T PRK04531 106 IVRKVFQ-RSNLDLVEA---------------------------VESSLRAGSIPVIASLGETPSGQILNINADVAANEL 157 (398)
T ss_pred HHHHHHH-HHHHHHHHH---------------------------HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHH
Confidence 6666554 222222221 6778999999999772 1222 46799999999
Q ss_pred HHHcCCcEEEEeeccCccccCCCCCCCCceeccccCH-HHHHH-------hccccchHHHHHHHHhCCCCEEEEEccCcc
Q psy13351 560 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF-DEVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSG 631 (837)
Q Consensus 560 A~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~-~e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~ 631 (837)
|..|+|++|+++|||+|||+.+ +++|+.++. ++... .|+|..++.++..|.+...++.++++..|+
T Consensus 158 A~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~ 231 (398)
T PRK04531 158 VSALQPYKIIFLTGTGGLLDAD------GKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPS 231 (398)
T ss_pred HHHcCCCEEEEEECCCCccCCC------CCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 9999999999999999999743 567888875 33322 589999999988887654467777888899
Q ss_pred hHHHHHcCC-ccceEEEEee
Q psy13351 632 ALKRVIEGK-NEGTLVYEIY 650 (837)
Q Consensus 632 ~i~~al~Ge-~~GT~I~~~~ 650 (837)
++...|.++ ..||+|...+
T Consensus 232 ~Ll~eLft~~G~GT~I~~g~ 251 (398)
T PRK04531 232 DLAKELFTHKGSGTLVRRGE 251 (398)
T ss_pred HHHHHHccCCCCCeEEecCC
Confidence 998877655 5799999764
|
|
| >COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=142.89 Aligned_cols=173 Identities=20% Similarity=0.211 Sum_probs=134.4
Q ss_pred CceEEEEeCcchhhh--cccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHH
Q psy13351 455 GIELAIVIGGGNICR--GISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKY 532 (837)
Q Consensus 455 G~~vVIVhGGG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~l 532 (837)
+.++++|.|||.++. .......+++....+++.+.++...+.++++....+....+. .+ +..
T Consensus 26 ~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~lad~~~~~~~~tv~-ep---------------~~~ 89 (212)
T COG2054 26 QRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFYLADLASRFVTDTVT-EP---------------EDG 89 (212)
T ss_pred cceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhhhcccccceee-ch---------------hhc
Confidence 347999999995543 344455678889999999999998999888776554422110 11 112
Q ss_pred HhCCCEEEEeCC----CC-----CCCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHHhc
Q psy13351 533 LEEGKVVIFAGG----IG-----NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 603 (837)
Q Consensus 533 l~~g~VPVv~G~----~G-----~~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~~G 603 (837)
...+..||+-+. .- ...+|+|++|.++|.+++|..+++.|||||||+.+|+ ++++++|+..++.. |
T Consensus 90 i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~-~ 164 (212)
T COG2054 90 IKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT-G 164 (212)
T ss_pred cCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc-C
Confidence 333455555431 00 1247799999999999999999999999999998764 48999999998866 7
Q ss_pred cccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCc-cceEEEE
Q psy13351 604 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKN-EGTLVYE 648 (837)
Q Consensus 604 ~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~-~GT~I~~ 648 (837)
--..|+..-+++.+.++.++++||.+|+++..++.|++ +||+|++
T Consensus 165 ~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 165 ETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred cccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEeC
Confidence 78899999999999999999999999999999999976 5999986
|
|
| >PLN02825 amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-14 Score=160.16 Aligned_cols=202 Identities=17% Similarity=0.150 Sum_probs=146.9
Q ss_pred chhhhhhhhHHhhhcCceEEEEeCcchhh---hccccccc----C---CCcchHHHHHHHHHHHHHHHHHHH--------
Q psy13351 440 IIKNIISEISEIVSCGIELAIVIGGGNIC---RGISNKIQ----N---IDRSTADYMGMLATIINSLALFDI-------- 501 (837)
Q Consensus 440 ~i~~la~~I~~l~~~G~~vVIVhGGG~~~---~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~ll~~~-------- 501 (837)
.+.+++.+|+.|...|.++|||||||... ........ + .++.+++.. +.+.+..+..+.+.
T Consensus 33 ~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~~L~~~-~~~~G~v~~~i~a~Ls~~~~v~ 111 (515)
T PLN02825 33 HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSAALQAS-MEAAGKIRVMIEAKLSPGPSIP 111 (515)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHH-HHHHHHHHHHHHHhhccccchh
Confidence 57889999999999999999999999332 22222221 1 266667664 66677766666664
Q ss_pred -HHHcCCce----eEeehhchhhh------------------hhccchHHHHHHHhCCCEEEEeC-C---CCCC-CCcch
Q psy13351 502 -LNKSGIIS----HVMSAISIEKF------------------LESYIPLNAIKYLEEGKVVIFAG-G---IGNP-FFTTD 553 (837)
Q Consensus 502 -L~~~gi~a----~~l~~~~~~~~------------------~~~~~~~~i~~ll~~g~VPVv~G-~---~G~~-~~s~D 553 (837)
|..+|+++ +++++.+.+.+ ++.++.+.|..+|+.|.|||+++ + .|.. ++++|
T Consensus 112 ~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD 191 (515)
T PLN02825 112 NLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTY 191 (515)
T ss_pred HHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHH
Confidence 48888887 67766654111 45678999999999999999998 2 2222 46799
Q ss_pred HHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hc---------c--------------c--
Q psy13351 554 TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KK---------L--------------E-- 605 (837)
Q Consensus 554 ~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G---------~--------------~-- 605 (837)
.+|+.+|.+|+||+|||+|||+ +++.+ .++|++++.+|+.+ .+ . .
T Consensus 192 ~vA~avA~aL~A~KLI~ltd~~-~~~~~------g~li~~l~~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (515)
T PLN02825 192 EVATACALAIGADKLICIVDGP-ILDEN------GRLIRFMTLEEADMLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDS 264 (515)
T ss_pred HHHHHHHHHcCCCeEEEEeCcc-eecCC------CCCcCcCCHHHHHHHHHhhhhcchhhhhhhhhcccccccccccccc
Confidence 9999999999999999999977 55432 45777777665543 11 0 0
Q ss_pred ------------------------------c-------------------------chHHHHHHHHhCCCC-EEEEEccC
Q psy13351 606 ------------------------------I-------------------------MDSTAFSFCRDQKLP-IRVFSIIK 629 (837)
Q Consensus 606 ------------------------------v-------------------------~~~~Aa~~a~~~gi~-v~I~ng~~ 629 (837)
. .++.+|-.|.+.|++ ++++++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~ 344 (515)
T PLN02825 265 VNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTI 344 (515)
T ss_pred ccccccccccccccccccccccccccccccCcccccccccccccchhhchhhhhHHHHHHHHHHHHHcCCCeEEeccCCC
Confidence 0 014567777788995 99999999
Q ss_pred cchHH-HHHcCCccceEEEEe
Q psy13351 630 SGALK-RVIEGKNEGTLVYEI 649 (837)
Q Consensus 630 ~~~i~-~al~Ge~~GT~I~~~ 649 (837)
.+.+. .++.-+.+||.|..+
T Consensus 345 ~gall~elft~dg~gt~i~~~ 365 (515)
T PLN02825 345 EGVLLLELFTRDGMGTMIASD 365 (515)
T ss_pred CchHHHHhhccCCceeEeccC
Confidence 88876 567778899999987
|
|
| >PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-13 Score=137.72 Aligned_cols=90 Identities=28% Similarity=0.399 Sum_probs=73.2
Q ss_pred hhccccc-CCCeeEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh-----------------
Q psy13351 261 NISNRNA-KDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ----------------- 320 (837)
Q Consensus 261 kk~~r~~-~eG~i~~y~~--~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~----------------- 320 (837)
+++.++. .+|.+++|+| ||+|+||+++++++.. ++++++|||||+|++|.+++.
T Consensus 83 ~r~~~~~~~~~~v~~Y~H~~gkig~lV~~~~~~~~~------~~~ak~iAmhIaA~~P~~l~~~~vp~~~~~~E~~i~~~ 156 (221)
T PF00889_consen 83 RRAARISAPNGFVGSYVHNNGKIGVLVALEGDNDSA------KEFAKDIAMHIAAMNPKYLSEEDVPAEVLEKEKEIAKE 156 (221)
T ss_dssp EEEEEEE-TTSEEEEEEET-TTEEEEEEEET-SHGG------HHHHHHHHHHHHHH--SBSSCTGS-CCHHHHHHHHHHH
T ss_pred eEEEEEeccCCEEEEEECCCCcEEEEEEEEcCcchH------HHHHHHHHHHHhhhCccccCcccCCHHHHHHHHHHHHH
Confidence 4444444 4899999999 7999999999998864 689999999999999976543
Q ss_pred -----------------------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCC
Q psy13351 321 -----------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN 360 (837)
Q Consensus 321 -----------------------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~ 360 (837)
++|+|++|+++||+|++++..+. |+|.+|+||++||
T Consensus 157 ~~~~~gKpe~i~ekIv~Gkl~k~~~e~~Ll~Q~fv~D~~~tV~~~l~~~~~~----i~v~~F~R~~vGE 221 (221)
T PF00889_consen 157 QAKAEGKPENIIEKIVEGKLKKFYKENCLLEQPFVKDPKKTVKQYLKEVGKE----IKVVGFVRFEVGE 221 (221)
T ss_dssp HHHTTTS-HHHHHHHHHHHHHHHHHHCBTCCSBETTETTSBHHHHHHCTTHH-----EEEEEEEEETTT
T ss_pred HhhccCCcHHHHHHHhhhhHhheehheeecCCCccCCCCccHHHHHHhcCCC----cEEEEEEEEecCC
Confidence 78999999999999998876555 8999999999986
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the C-terminal dimerisation domain found primarily in EF-Tu (EF1A) proteins from bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular; PDB: 1XB2_B 3AVU_A 3AVW_A 3AGQ_A 3AGP_A 3AVT_A 3AVY_A 3AVX_A 3AVV_A 1TFE_A .... |
| >COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-12 Score=136.07 Aligned_cols=82 Identities=28% Similarity=0.411 Sum_probs=72.9
Q ss_pred CCeeEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh--------------------------
Q psy13351 269 DGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ-------------------------- 320 (837)
Q Consensus 269 eG~i~~y~~--~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~-------------------------- 320 (837)
+|.+++|+| +++||||++++. + ...++|++|||||||++|.+++.
T Consensus 151 ~~~v~~Y~H~~griGVlv~~~~~-~------~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~Er~i~~~~~~~~gKP~ 223 (296)
T COG0264 151 DGVVGSYLHGNGRIGVLVALKGG-A------ADEELAKDIAMHIAAMNPQYLSREDVPAEVVEKEREIFLAQLKAEGKPE 223 (296)
T ss_pred cccEEEEEeCCCcEEEEEEEecc-c------hHHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 478999999 689999999997 3 35689999999999999987654
Q ss_pred --------------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeEE
Q psy13351 321 --------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI 363 (837)
Q Consensus 321 --------------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i~ 363 (837)
|+|+|++|+++||++++++. ++++.+|+||++|+||.
T Consensus 224 ~i~eKiVeGr~~Kf~~E~~Ll~Q~fV~d~~~TV~~~lke~------~~~v~~FvR~evGegie 280 (296)
T COG0264 224 NIVEKIVEGRMNKFLAEVCLLEQPFVKDPKKTVEQLLKEA------NAKVTEFVRFEVGEGIE 280 (296)
T ss_pred HHHHHHHhHHHHHHHHHHhhccCceecCcchhHHHHHHhc------CceeeeeeeeeccCCce
Confidence 78999999999999999876 78999999999999984
|
|
| >TIGR00116 tsf translation elongation factor Ts | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-12 Score=137.24 Aligned_cols=88 Identities=24% Similarity=0.346 Sum_probs=74.0
Q ss_pred hhcccccC-CCeeEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh-----------------
Q psy13351 261 NISNRNAK-DGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ----------------- 320 (837)
Q Consensus 261 kk~~r~~~-eG~i~~y~~--~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~----------------- 320 (837)
++..++.. +|.+++|+| |++||||++++++|. +|+++|||||||++|.+++.
T Consensus 138 rR~~~~~~~~~~v~~Y~H~~gkigvlv~~~~~~~~--------~~ak~iAmhIaA~~P~~l~~~~vp~~vie~Erei~~~ 209 (290)
T TIGR00116 138 RRVAVLEGDSNVIGSYLHAGARIGVLVALKGKADE--------ELAKHIAMHVAASKPQFIDPDDVSAEVVKKERQIQTD 209 (290)
T ss_pred EEEEEEecCCCcEEEEEcCCCcEEEEEEEecCchH--------HHHHHHHHHHHhcCCccCchhhCCHHHHHHHHHHHHH
Confidence 34444443 379999999 799999999997662 58999999999999986544
Q ss_pred -----------------------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeE
Q psy13351 321 -----------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL 362 (837)
Q Consensus 321 -----------------------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i 362 (837)
|+|+|++|+++||.|++++ .+++|.+|+||++|+|+
T Consensus 210 ~~~~~gKP~~i~eKIv~Grl~Kf~~E~~Ll~Q~fv~D~~~tV~~~l~~------~~~~v~~F~R~~vGegi 274 (290)
T TIGR00116 210 QAELSGKPKEIAEKMVEGRMKKFLAEISLLGQKFVMDPSKTVGQFLKE------KNAKVTEFIRFEVGEGI 274 (290)
T ss_pred HHHhcCCcHHHHHHHhhhHHHHHhhhceeeecccccCCccCHHHHHHH------cCCEEEEEEEEEecCCc
Confidence 7899999999999999986 35899999999999985
|
This protein is found in Bacteria, mitochondria, and chloroplasts. |
| >PRK09377 tsf elongation factor Ts; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-12 Score=133.05 Aligned_cols=155 Identities=25% Similarity=0.293 Sum_probs=101.4
Q ss_pred EEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 175 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 175 ~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.-+++.-||.+++|. ++..+..|.-.+. .+++.... ....+..++-. .+..+..++..+.-+
T Consensus 70 ~~~~vElncETDFVA-------rne~F~~l~~~i~-~~~l~~~~---------~~~e~ll~~~~-~g~tv~d~i~~~~~~ 131 (290)
T PRK09377 70 KGVLVEVNSETDFVA-------KNEDFQALANEVA-EAALAAKP---------ADVEALLALKL-DGGTVEEARTELIAK 131 (290)
T ss_pred EEEEEEEecCCcccc-------CChHHHHHHHHHH-HHHHhcCC---------CCHHHHHhccc-cCCcHHHHHHHHHHH
Confidence 457777888777663 4444555544333 33333211 12221111111 233555555444433
Q ss_pred hh-hhhhhhccccc-CCCeeEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh----------
Q psy13351 255 LG-KKILNISNRNA-KDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ---------- 320 (837)
Q Consensus 255 g~-~~a~kk~~r~~-~eG~i~~y~~--~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~---------- 320 (837)
=. .-.-+|..++. ++|.|+.|+| |++||||+++++++ +|+++|||||+|++|.+++.
T Consensus 132 iGEnI~l~R~~~~~~~~~~i~~Y~H~~gkigvlV~~~~~~~---------~~ak~iAMhIaA~~P~~l~~~~vp~~~i~~ 202 (290)
T PRK09377 132 IGENISLRRFARLEKDGGVVGSYLHGGGRIGVLVALEGGDE---------ELAKDIAMHIAAMNPEYLSREDVPAEVVEK 202 (290)
T ss_pred hcCceEEEEEEEEeecCCEEEEEEcCCCcEEEEEEEccCcH---------HHHHHHHHHHHhcCCccCChhhCCHHHHHH
Confidence 11 11123444443 4789999999 79999999998642 58999999999999976543
Q ss_pred ------------------------------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeE
Q psy13351 321 ------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL 362 (837)
Q Consensus 321 ------------------------------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i 362 (837)
|+|+|++|++.||+|++++ .+++|.+|+||++||++
T Consensus 203 E~~i~~~~~~~~gKP~~i~eKIv~Grl~Kf~~e~~Ll~Q~fi~D~~~tV~~~l~~------~~i~v~~F~R~evGe~~ 274 (290)
T PRK09377 203 EREIAKEQAKEEGKPEEIVEKIVEGRLNKFLKEVVLLEQPFVKDPKKTVGQLLKE------AGAKVVGFVRFEVGEGI 274 (290)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHhHHHHHHhhhceeccCcccCCCCcCHHHHHHH------cCCEEEEEEEEEecCcc
Confidence 7899999999999999986 36899999999999975
|
|
| >CHL00098 tsf elongation factor Ts | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-11 Score=122.76 Aligned_cols=82 Identities=30% Similarity=0.433 Sum_probs=66.6
Q ss_pred EEEEeeCCeEEEEeeC-CeEEEEEEecCCCh---------hHHHHHHhhhhcc-CccccCcCcCchHHHHHHHHHHHHHH
Q psy13351 353 FKLFKTNNNLISYLHD-NKIGVIVEYNGDNE---------SAVKDVAMHIAAM-KPIALSSDQIPKKIIEKEYSLAVLKA 421 (837)
Q Consensus 353 f~~~~~g~~i~~Y~H~-~~~~~~v~~~~~~~---------~~~~~iamhi~a~-~p~~l~~~~vp~~~~~~ek~~~v~k~ 421 (837)
..|...++.+++|+|. +++||||++++..+ ++|++|||||||| +|.||++++||++++++|++++..++
T Consensus 49 ~~r~~~eG~V~~yiH~~gk~gvlVeln~ETDfVArn~~F~~la~~IAmhiaA~p~p~~l~~~~vp~~~i~~E~~i~~~~~ 128 (200)
T CHL00098 49 STRITTEGLIESYIHTGGKLGVLVEINCETDFVARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLEKKIESEKD 128 (200)
T ss_pred hccccccCeEEEEEecCCCEEEEEEEecCcccccccHHHHHHHHHHHHHHHcCCCCeEecHHHCCHHHHHHHHHHHHHHH
Confidence 3454445679999996 69999999987532 5789999999999 79999999999999999999988886
Q ss_pred hhhhhhhccCCCccccccc
Q psy13351 422 QQLGEALMKGDAYNINSSI 440 (837)
Q Consensus 422 ~~~gs~~~~g~~~~i~~~~ 440 (837)
.. .|+|..+-+++
T Consensus 129 ~~------~gKp~~i~eki 141 (200)
T CHL00098 129 DL------QNKPEEIKEKI 141 (200)
T ss_pred Hh------cCCcHHHHHHH
Confidence 33 37887665554
|
|
| >PRK12332 tsf elongation factor Ts; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-10 Score=116.81 Aligned_cols=82 Identities=35% Similarity=0.509 Sum_probs=65.5
Q ss_pred EEEEeeCCeEEEEeeC-CeEEEEEEecCC------Ch---hHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHh
Q psy13351 353 FKLFKTNNNLISYLHD-NKIGVIVEYNGD------NE---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQ 422 (837)
Q Consensus 353 f~~~~~g~~i~~Y~H~-~~~~~~v~~~~~------~~---~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~ 422 (837)
.-|....+-+++|+|. |+.|+||++... ++ .+|++||||||||+|.||++++||++++++|++++..++.
T Consensus 52 ~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDFVa~n~~F~~lak~iamhIaA~~P~~l~~~~v~~~~i~~E~~i~~~~~~ 131 (198)
T PRK12332 52 AGRVAAEGLVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVIEKEKEIYRAQAL 131 (198)
T ss_pred ccccccCceEEEEEecCCCEEEEEEEeccCCccccCHHHHHHHHHHHHHHHhhCCccCChhhCCHHHHHHHHHHHHHHHH
Confidence 4455555669999996 799999987654 33 4799999999999999999999999999999999888863
Q ss_pred hhhhhhccCCCccccccc
Q psy13351 423 QLGEALMKGDAYNINSSI 440 (837)
Q Consensus 423 ~~gs~~~~g~~~~i~~~~ 440 (837)
. .|+|..+.+++
T Consensus 132 ~------~gKP~~i~eki 143 (198)
T PRK12332 132 N------EGKPENIVEKI 143 (198)
T ss_pred h------cCCcHHHHHHH
Confidence 3 37776555544
|
|
| >KOG2436|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.9e-05 Score=88.23 Aligned_cols=147 Identities=13% Similarity=0.096 Sum_probs=101.0
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCcchhhhc---cccccc----CC---CcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRG---ISNKIQ----NI---DRSTADYMGMLATIINSLALFDILNKSG 506 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~---~~~~~~----~~---~~~~~~~~~~~~~~~~~~ll~~~L~~~g 506 (837)
.....+.++..++.+...|..+|||||+|....+ ...... +. ++..+...-....++++.-+...|+++|
T Consensus 107 ~t~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~~~~~~~E~n~~lv~nL~~~g 186 (520)
T KOG2436|consen 107 STSLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAAKESVSLEANLNLVINLSQLG 186 (520)
T ss_pred ccchHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHhhhcchhhhhhHHHHHHHHhh
Confidence 5666788889999999999999999999833222 222221 11 3333333333344555555777788888
Q ss_pred CceeEeehhchh--------------------hhhhccchHHHHHHHhCCCEEEEeC----CCCC-CCCcchHHHHHHHH
Q psy13351 507 IISHVMSAISIE--------------------KFLESYIPLNAIKYLEEGKVVIFAG----GIGN-PFFTTDTTAALRAA 561 (837)
Q Consensus 507 i~a~~l~~~~~~--------------------~~~~~~~~~~i~~ll~~g~VPVv~G----~~G~-~~~s~D~lAa~lA~ 561 (837)
-.+++.++.... .-+..++.+.+..+++.|.+|++.. .-|. -++++|+.|..+|.
T Consensus 187 ~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~ 266 (520)
T KOG2436|consen 187 TRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELAL 266 (520)
T ss_pred ceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHh
Confidence 887776654221 0145568899999999999999875 1222 13669999999999
Q ss_pred HcCCcEEEEeeccCccccCCCC
Q psy13351 562 EIKAEIILKATKVDGIYNSDPN 583 (837)
Q Consensus 562 ~L~Ad~liilTDVdGVy~~dP~ 583 (837)
.|+|+.+++++|+.-+...+|+
T Consensus 267 ~L~~~kli~l~d~g~~l~e~ge 288 (520)
T KOG2436|consen 267 ALGPDKLILLMDKGRILKENGE 288 (520)
T ss_pred ccCcceeEEecccccccccCcc
Confidence 9999999999998445555554
|
|
| >PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00025 Score=52.02 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=29.2
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEIL 251 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~L 251 (837)
.+++|+.. |++..+|++||..++||++.|++||
T Consensus 5 ~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 5 KVQQLMEM-GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 46677877 9999999999999999999999998
|
The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A .... |
| >PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.023 Score=62.15 Aligned_cols=195 Identities=17% Similarity=0.119 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCCCCCC-hHHHHHHHHHHHHHHHHh
Q psy13351 35 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTN-FKTIKTSIQRLKEMDLFI 113 (837)
Q Consensus 35 l~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~LTN-~~~i~~~i~~~~~~~~~~ 113 (837)
+...+..+.++...+.....++|+|.|+|......-.+..++....-+-+.-.++.|.+.. +..+...+.
T Consensus 41 v~~~l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e--------- 111 (299)
T PRK05441 41 VEKALPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVE--------- 111 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhccc---------
Confidence 4556777888888888888999999999999887766665554432222222234443321 121111100
Q ss_pred ccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC----CcchHHHHHhhcCCCEEEEecCCCCC--Cc
Q psy13351 114 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DG 187 (837)
Q Consensus 114 ~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~l~Dtn~~~--~~ 187 (837)
..++.. .-....+.- .++ ..-|++|++... +-..+++.|+..|.|+|+|++...+| ..
T Consensus 112 ---~~ed~~-----------~~~~~~l~~-~~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~ 175 (299)
T PRK05441 112 ---GAEDDA-----------ELGAADLKA-INL-TAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKE 175 (299)
T ss_pred ---ccCChH-----------HHHHHHHHh-cCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHh
Confidence 000000 000001100 011 367888888654 23457789999999999998644333 24
Q ss_pred ceEEccCCC-----------cchhhhhhhhhhchhhhhccc---------------------chhhhhcccCCChHHHHH
Q psy13351 188 INYVIPGND-----------DSAKSIALYTKGIVDAFLDAK---------------------TVGELRSKTLAPIMECKK 235 (837)
Q Consensus 188 i~ypIP~N~-----------~s~~si~~~~~~l~~ai~~g~---------------------~v~~lr~~t~~~~~~~k~ 235 (837)
.||+|.... .+..+..+++++|+..+..-. .++=+...||++..+|.+
T Consensus 176 aD~~I~~~~g~E~~~~st~~~s~taqk~iLn~lst~~~~~~gkv~~n~mvd~~~~n~kl~~ra~~i~~~~~~~~~~~a~~ 255 (299)
T PRK05441 176 ADIAIEVVVGPEVLTGSTRMKAGTAQKLVLNMISTGVMIRLGKVYGNLMVDVKATNEKLVDRAVRIVMEATGVSREEAEA 255 (299)
T ss_pred CCEEEEcCCCCccccccccccchhHHHHHHHHHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 677664432 244567777888777543222 112234457999999999
Q ss_pred HHHHhhccHHHHHHHHHHH
Q psy13351 236 ALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 236 al~~~~~d~~~A~~~Lr~~ 254 (837)
+|.+++|++..|+-.+...
T Consensus 256 ~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 256 ALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHhCCCcHHHHHHHHhC
Confidence 9999999999999877653
|
|
| >PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.075 Score=58.04 Aligned_cols=193 Identities=18% Similarity=0.158 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCC-CCCChHHHHHHHHHHHHHHHHhc
Q psy13351 36 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGG-LLTNFKTIKTSIQRLKEMDLFIT 114 (837)
Q Consensus 36 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G-~LTN~~~i~~~i~~~~~~~~~~~ 114 (837)
......|..+...+....+++|+|.++|....+.-.+...+....-+-+....+.| ++..+..+...+.
T Consensus 38 ~~~~~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~---------- 107 (296)
T PRK12570 38 EKVLPQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVE---------- 107 (296)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhccc----------
Confidence 34556788888888888899999999999987765545443333222221111222 2223332211100
Q ss_pred cCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC--Ccc
Q psy13351 115 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP--DGI 188 (837)
Q Consensus 115 ~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~--~~i 188 (837)
+ ..++ +.+ +.+ .+.. . .+ ..-|++|++....+. .+++.|+..|.|+|+|+....+| +..
T Consensus 108 -~-~ed~---~~~-~~~---~l~a-~----~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~a 172 (296)
T PRK12570 108 -G-AEDD---PEL-GAQ---DLKA-I----GL-TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIA 172 (296)
T ss_pred -c-cCCc---HHH-HHH---HHHH-c----CC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhC
Confidence 0 0000 000 000 0111 0 11 356899888765444 57899999999999998654433 346
Q ss_pred eEEccC---CC--------cchhhhhhhhhhchhhhhc--cc-----ch------hhhh--------cccCCChHHHHHH
Q psy13351 189 NYVIPG---ND--------DSAKSIALYTKGIVDAFLD--AK-----TV------GELR--------SKTLAPIMECKKA 236 (837)
Q Consensus 189 ~ypIP~---N~--------~s~~si~~~~~~l~~ai~~--g~-----~v------~~lr--------~~t~~~~~~~k~a 236 (837)
||+|.. .. .+..+..+++++|+..+.. |+ +| .+|+ +-||++..+|.++
T Consensus 173 D~~I~~~~g~E~~~~st~~~s~taqk~vLd~L~t~~~~r~Gk~~~n~mvd~~~~n~kl~~Ra~~i~~~~~~~~~~~a~~~ 252 (296)
T PRK12570 173 DIAISPVVGPEVLTGSTRLKSGTAQKMVLNMLSTASMIRLGKSYQNLMVDVKATNEKLVARAVRIVMQATGCSEDEAKEL 252 (296)
T ss_pred CEEEeeCcCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhcCeEEEeecchHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 777742 22 2456777888888775432 22 11 2333 3479999999999
Q ss_pred HHHhhccHHHHHHHHHH
Q psy13351 237 LIEANGKLSKAEEILRI 253 (837)
Q Consensus 237 l~~~~~d~~~A~~~Lr~ 253 (837)
|.+++|++.-|+-.+..
T Consensus 253 l~~~~~~vk~ai~~~~~ 269 (296)
T PRK12570 253 LKESDNDVKLAILMILT 269 (296)
T ss_pred HHHhCCccHHHHHHHHh
Confidence 99999999988886655
|
|
| >cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.046 Score=58.50 Aligned_cols=188 Identities=19% Similarity=0.140 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCCCCC-ChHHHHHHHHHHHHHHHHhc
Q psy13351 36 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT-NFKTIKTSIQRLKEMDLFIT 114 (837)
Q Consensus 36 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~LT-N~~~i~~~i~~~~~~~~~~~ 114 (837)
.+.+..|.+|+..+....+++|++.|+|......-.+...++...-+-....++.|.+. .+..+...+..
T Consensus 29 ~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~--------- 99 (257)
T cd05007 29 EAALPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEG--------- 99 (257)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccc---------
Confidence 34456788888888888899999999999988776655444443222221123333332 22222111100
Q ss_pred cCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC----CcchHHHHHhhcCCCEEEEecCCCCC--Ccc
Q psy13351 115 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DGI 188 (837)
Q Consensus 115 ~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i 188 (837)
..+. ... . ...+.. .++ ..-|++|++... .-..+++.|++.|.|+|+|+....+| ...
T Consensus 100 ---~edd---~~~-~---~~~l~a-----~~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~a 163 (257)
T cd05007 100 ---AEDD---EEA-G---AADLQA-----INL-TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLA 163 (257)
T ss_pred ---cCCh---HHH-H---HHHHHH-----cCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhC
Confidence 0000 000 0 000111 011 467888888644 33456789999999999998554333 135
Q ss_pred eEEccCCC-----------cchhhhhhhhhhchhhhhc--cc-----ch------hhh--------hcccCCChHHHHHH
Q psy13351 189 NYVIPGND-----------DSAKSIALYTKGIVDAFLD--AK-----TV------GEL--------RSKTLAPIMECKKA 236 (837)
Q Consensus 189 ~ypIP~N~-----------~s~~si~~~~~~l~~ai~~--g~-----~v------~~l--------r~~t~~~~~~~k~a 236 (837)
|++|.... .+..+..+++++|...+.. |+ ++ .+| .+-||++..+|.++
T Consensus 164 D~~I~~~~g~E~~~~st~~~s~~aqk~vLn~L~t~~~~~~g~v~~n~mvd~~~~n~kl~~ra~~i~~~~~~~~~~~a~~~ 243 (257)
T cd05007 164 DIAIALITGPEVVAGSTRLKAGTAQKLALNMLSTAVMIRLGKVYGNLMVDVRATNEKLRERAIRIVMEATGVSRDEAEAA 243 (257)
T ss_pred CEEEEcCCCCccccCccccccHHHHHHHHHHHHHHHHHHcchHHHHHHHHhhcCHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 66664432 2445677788877764433 22 11 123 34478999999999
Q ss_pred HHHhhccHHHHH
Q psy13351 237 LIEANGKLSKAE 248 (837)
Q Consensus 237 l~~~~~d~~~A~ 248 (837)
|.+++|++..|+
T Consensus 244 l~~~~~~~k~a~ 255 (257)
T cd05007 244 LEQAGGDVKTAI 255 (257)
T ss_pred HHHhCCCceeee
Confidence 999999887665
|
Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate. |
| >TIGR00274 N-acetylmuramic acid 6-phosphate etherase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.19 Score=54.77 Aligned_cols=192 Identities=15% Similarity=0.112 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHH---HcCCCcccCcccCCCC-CChHHHHHHHHHHHHHH
Q psy13351 35 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAV---RAGMPFIDQRWLGGLL-TNFKTIKTSIQRLKEMD 110 (837)
Q Consensus 35 l~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~---~~~~~~v~~rw~~G~L-TN~~~i~~~i~~~~~~~ 110 (837)
+...+..+.+|...+....+++|+|.|+|......-.+...++ +.|..+. .+.|.+ ..+..+.....-
T Consensus 36 v~~~l~~I~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~---~~~~~iaGg~~a~~~~~e~----- 107 (291)
T TIGR00274 36 IESVLPDIAAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPE---LVKGIIAGGECAILHAVEG----- 107 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHH---HhhHHhcCChHHHhccchh-----
Confidence 3445667788888888877899999999998766543443322 2232110 111111 111111101000
Q ss_pred HHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC-
Q psy13351 111 LFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP- 185 (837)
Q Consensus 111 ~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~- 185 (837)
+.+.+. .-..-+.. .++ ..-|++|++...-+ ..+++.|++.|.|+|+|+....++
T Consensus 108 -------~Ed~~~-------~~~~dl~~-----~~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~L 167 (291)
T TIGR00274 108 -------AEDSTE-------AGANDLQN-----IHL-TKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAA 167 (291)
T ss_pred -------hhcchH-------HHHHHHHh-----cCC-CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 000000 00000111 112 35688888865433 356789999999999997533222
Q ss_pred -CcceEEccCC-----------Ccchhhhhhhhhhchhhh--hccc-----ch------hhh--------hcccCCChHH
Q psy13351 186 -DGINYVIPGN-----------DDSAKSIALYTKGIVDAF--LDAK-----TV------GEL--------RSKTLAPIME 232 (837)
Q Consensus 186 -~~i~ypIP~N-----------~~s~~si~~~~~~l~~ai--~~g~-----~v------~~l--------r~~t~~~~~~ 232 (837)
+..|++|+.. -.|.-+..+++++|+..+ ..|+ +| .+| .+-|+++..+
T Consensus 168 a~~aD~~I~~~~g~E~~~~st~~~s~~aqk~iLd~L~t~~~~~~gk~~~n~mvd~~~~N~kl~~Ra~~i~~~~~~~~~~~ 247 (291)
T TIGR00274 168 SEIADIAIETIVGPEILTGSSRLKAGTAQKMVLNMLSTASMIKLGKVYENLMVDVQASNEKLKARAVRIVRQATDCNKEL 247 (291)
T ss_pred HHhCCEEEecCCCCccccccchhhHHHHHHHHHHHHHHHHHHhcchhhcCeEEeeecccHHHHHHHHHHHHHHhCcCHHH
Confidence 3466666542 134566667778777754 3333 11 123 3448999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHH
Q psy13351 233 CKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 233 ~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
|.++|.+++|++.-|+-.+...
T Consensus 248 a~~~l~~~~~~vk~Ai~~~~~~ 269 (291)
T TIGR00274 248 AEQTLLAADQNVKLAIVMILST 269 (291)
T ss_pred HHHHHHHhCCCcHHHHHHHHhC
Confidence 9999999999999999876653
|
This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity. |
| >PRK06369 nac nascent polypeptide-associated complex protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.013 Score=53.97 Aligned_cols=73 Identities=26% Similarity=0.276 Sum_probs=53.1
Q ss_pred CCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 173 IPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 173 IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
=|-|...++... -+|.|.|-..-.....- ...-.....|+.++++|+++..+|++||.++|||+-.|+-+|.
T Consensus 42 ~P~V~~m~~~g~---~tY~I~Ge~~~e~~~~~-----~~~~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~ 113 (115)
T PRK06369 42 NPQVTVMDAQGQ---KTYQIVGEPEEVEKEAE-----KEVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLS 113 (115)
T ss_pred CCeEEEEecCCC---cEEEEEeccEEeecccc-----ccCCCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHh
Confidence 366666666433 67888887544321110 0123455678889999999999999999999999999999997
Q ss_pred H
Q psy13351 253 I 253 (837)
Q Consensus 253 ~ 253 (837)
+
T Consensus 114 ~ 114 (115)
T PRK06369 114 S 114 (115)
T ss_pred c
Confidence 5
|
|
| >TIGR00264 alpha-NAC-related protein | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.016 Score=53.22 Aligned_cols=73 Identities=21% Similarity=0.249 Sum_probs=55.1
Q ss_pred cCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccchhhhhcccCCChHHHHHHHHHhhccHHHHHHH
Q psy13351 171 LNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEI 250 (837)
Q Consensus 171 l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~ 250 (837)
..-|.|.+.+.-- .-+|-|-|...... +. ...-.....|+.++++|+++..+|++||.++|||+-.|+-+
T Consensus 44 f~~p~V~~m~~~G---~~tYqI~G~~~~~~-~~------~~~~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~ 113 (116)
T TIGR00264 44 FENPKVQVMDILG---VKTYQITGKPKKEK-VE------EEEEITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMK 113 (116)
T ss_pred EecCeeEEEecCC---cEEEEEecccEEee-cc------cccCCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHH
Confidence 5678888887753 37888888765321 00 00124556788899999999999999999999999999999
Q ss_pred HHH
Q psy13351 251 LRI 253 (837)
Q Consensus 251 Lr~ 253 (837)
|.+
T Consensus 114 L~~ 116 (116)
T TIGR00264 114 LEE 116 (116)
T ss_pred hhC
Confidence 864
|
This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator. |
| >KOG1071|consensus | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.0052 Score=65.34 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=71.3
Q ss_pred hhccccc--CCCeeEEEEe-------------CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChh------
Q psy13351 261 NISNRNA--KDGVIAIYIS-------------EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLD------ 319 (837)
Q Consensus 261 kk~~r~~--~eG~i~~y~~-------------~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~------ 319 (837)
+|+-+.. ..+.++.|.| |++++||.+|.....++ .+..+++.|+.|++.|.|..+.
T Consensus 211 rR~~~~ka~~g~~l~~y~H~A~q~agt~~l~~g~~~alvAi~~~~s~~~---~~~~~~~~i~q~ivgm~p~s~~e~~k~e 287 (340)
T KOG1071|consen 211 RRAACMKAPSGTYLGSYSHGAPQSAGTHKLPLGEYGALVAINSVSSQLT---SLEDVAKQICQHIVGMSPESVGESLKDE 287 (340)
T ss_pred eEEEEEecCCCceEEeeecCCCCCccccccccccchhhhhhhhccchhh---hHHHHHHHHHHHhhccChhhhccccccc
Confidence 4444443 2456899998 36788888887665443 4677999999999999997665
Q ss_pred ----------hhhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCC
Q psy13351 320 ----------QLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN 360 (837)
Q Consensus 320 ----------~l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~ 360 (837)
-+.|+|+-|+.+||.+++. +-|.+|..|+||++|+
T Consensus 288 ~~~~~e~et~ll~q~~lld~~itv~~~l~------~~~~~V~DfvR~E~Ge 332 (340)
T KOG1071|consen 288 PGQGAEAETALLSQPSLLDPSITVKEYLD------PHNVSVVDFVRFEVGE 332 (340)
T ss_pred ccccccchhhheecHhhcCchhhHHHHhc------cCCcchHHHHHHHhcc
Confidence 1779999999999988887 6678899999999997
|
|
| >smart00165 UBA Ubiquitin associated domain | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.031 Score=40.79 Aligned_cols=26 Identities=38% Similarity=0.328 Sum_probs=24.7
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEIL 251 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~L 251 (837)
.|.+..+|+.||..++||+++|++||
T Consensus 11 mGf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 11 MGFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 48999999999999999999999998
|
Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin. |
| >cd00194 UBA Ubiquitin Associated domain | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.04 Score=40.43 Aligned_cols=27 Identities=30% Similarity=0.213 Sum_probs=25.5
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
.|.+..+|..||..++||+++|++||.
T Consensus 11 mGf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 11 MGFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 588999999999999999999999985
|
The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins. |
| >COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription] | Back alignment and domain information |
|---|
Probab=87.42 E-value=0.52 Score=43.72 Aligned_cols=35 Identities=29% Similarity=0.206 Sum_probs=30.1
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
.|+-.-++|+++..++++||+++|||+-.|+--|.
T Consensus 87 DIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L~ 121 (122)
T COG1308 87 DIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKLT 121 (122)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHhc
Confidence 35555678999999999999999999999997764
|
|
| >PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A | Back alignment and domain information |
|---|
Probab=87.35 E-value=0.52 Score=35.71 Aligned_cols=36 Identities=19% Similarity=-0.049 Sum_probs=28.6
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+.++..-||++...|...|+.+|||++.|++.-=.
T Consensus 3 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 3 KIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356677789999999999999999999999986543
|
|
| >COG2103 Predicted sugar phosphate isomerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.86 E-value=13 Score=39.47 Aligned_cols=195 Identities=17% Similarity=0.141 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhc
Q psy13351 35 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 114 (837)
Q Consensus 35 l~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~ 114 (837)
.++.+..+..|...+..-.++||+..++|-....+--|...++-..-|-+...-+=|.+--=.. .+.+. .+..+
T Consensus 39 V~~alp~Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~~---A~~~a--vEGaE- 112 (298)
T COG2103 39 VEAALPQIAAAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGEE---AILKA--VEGAE- 112 (298)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCHH---HHHHh--hcCcc-
Confidence 4677888889999999999999999999999988877776665444333333333333332221 11110 11000
Q ss_pred cCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEec----CCCcchHHHHHhhcCCCEEEE-ecCCCCCC-cc
Q psy13351 115 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID----VGYHKGAVSEAIKLNIPIIGV-VDTNHSPD-GI 188 (837)
Q Consensus 115 ~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~----~~~~~~ai~Ea~~l~IP~i~l-~Dtn~~~~-~i 188 (837)
+-.+- -+ .-+++ + ++ ..-|+||=+- ..+=.-++++|++.|..+|+| |+-++..+ ..
T Consensus 113 -----D~~~~-----g~--~dl~~-~-~l----t~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~A 174 (298)
T COG2103 113 -----DDEEL-----GE--ADLKN-I-GL----TAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIA 174 (298)
T ss_pred -----ccHHH-----HH--HHHHH-c-CC----CcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhhhhc
Confidence 00000 00 00100 0 11 3456666553 234456889999999999999 67776544 36
Q ss_pred eEEccC---------C--Ccchhhhhhhhhhchhhhh--ccc-------------------chhhhhcccCCChHHHHHH
Q psy13351 189 NYVIPG---------N--DDSAKSIALYTKGIVDAFL--DAK-------------------TVGELRSKTLAPIMECKKA 236 (837)
Q Consensus 189 ~ypIP~---------N--~~s~~si~~~~~~l~~ai~--~g~-------------------~v~~lr~~t~~~~~~~k~a 236 (837)
||+|-- . =++-.+-.+++|+|+.+.. -|+ .++=+.+.|++...++..+
T Consensus 175 d~~I~~~vGPEvltGSTRlKaGTAQKlvLNMlST~~Mi~lGKvy~NlMVDv~atN~KL~dRa~RIv~~aT~~~~~~A~~~ 254 (298)
T COG2103 175 DIAIEPVVGPEVLTGSTRLKAGTAQKLVLNMLSTGVMIKLGKVYGNLMVDVKATNEKLRDRAVRIVMEATGCSAEEAEAL 254 (298)
T ss_pred CcceeeccCccccccccccccchHHHHHHHHHHHHHHHHhcccccceEEEeecchHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 676632 2 2455677889999987543 232 2222334589999999999
Q ss_pred HHHhhccHHHHHHHHHH
Q psy13351 237 LIEANGKLSKAEEILRI 253 (837)
Q Consensus 237 l~~~~~d~~~A~~~Lr~ 253 (837)
|.+++++..-|+-.+..
T Consensus 255 L~~~~~~vK~AIvm~~~ 271 (298)
T COG2103 255 LEEAGGNVKLAIVMLLT 271 (298)
T ss_pred HHHcCCccHhHHHHHHh
Confidence 99999999999877655
|
|
| >PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D | Back alignment and domain information |
|---|
Probab=83.48 E-value=13 Score=35.62 Aligned_cols=115 Identities=18% Similarity=0.158 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcc-cCCCCCChHHHHHHHHHHHHHHHHhccCc
Q psy13351 39 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGGLLTNFKTIKTSIQRLKEMDLFITNGS 117 (837)
Q Consensus 39 ~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G~LTN~~~i~~~i~~~~~~~~~~~~~~ 117 (837)
...+.+|...+.....++|+|.++|+....... ..++.+.+..+-.+++ .+.+.-+-...... -..++ ....
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~---~~~~ 90 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCGNGHSAAIA-SHFAADLGGLFGVNRILLPAIALNDDALTAI---SNDLE---YDEG 90 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEESTHHHHHH-HHHHHHHHCHSSSTSSS-SEEETTSTHHHHH---HHHTT---GGGT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHH-HHHHHHHhcCcCCCcccccccccccchHhhh---hcccc---hhhH
Confidence 577899999999999999999999998775443 3344444333333344 33322221100000 00110 1111
Q ss_pred cccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC-Ccch---HHHHHhhcCCCEEEEe
Q psy13351 118 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG-YHKG---AVSEAIKLNIPIIGVV 179 (837)
Q Consensus 118 ~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~-~~~~---ai~Ea~~l~IP~i~l~ 179 (837)
| -+ .+...+.+ +.-|++|+++.. ++.. |+++|++.|.+||+|.
T Consensus 91 ~-----------~~---~~~~~~~~-----~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 91 F-----------AR---QLLALYDI-----RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp H-----------HH---HHHHHTT-------TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred H-----------HH---HHHHHcCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 1 11 12222221 578999998764 3333 5689999999999985
|
... |
| >PRK00414 gmhA phosphoheptose isomerase; Reviewed | Back alignment and domain information |
|---|
Probab=81.90 E-value=29 Score=35.32 Aligned_cols=128 Identities=11% Similarity=0.029 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcc-cCCC----CCChHHHHHHHHHHHHHHHH
Q psy13351 38 TLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGGL----LTNFKTIKTSIQRLKEMDLF 112 (837)
Q Consensus 38 T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G~----LTN~~~i~~~i~~~~~~~~~ 112 (837)
-...|.+|+..|.....++++|.|+|......-. +.++......| +| .+|. ++++..+.. +
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~G~G~S~~~A-~~~a~~l~~~~---~~~r~g~~~~~~~d~~~~~~-------~--- 91 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSCGNGGSHCDA-MHFAEELTGRY---RENRPGYPAIAISDVSHLSC-------V--- 91 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH-HHHHHHhcccc---cCCCCCceEEecCcHHHHhh-------h---
Confidence 3467899999999999999999999987754322 22332221101 11 1111 133221100 0
Q ss_pred hccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--C
Q psy13351 113 ITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--D 186 (837)
Q Consensus 113 ~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~ 186 (837)
.....+ ...+.+... .+-+..|++|+++..-+ ..+++.|+..|+|+|+|+....+| +
T Consensus 92 ~~d~~~-----------~~~~~~~~~------~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~ 154 (192)
T PRK00414 92 SNDFGY-----------DYVFSRYVE------AVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAG 154 (192)
T ss_pred hccCCH-----------HHHHHHHHH------HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 000000 000011111 11257789998875432 256788899999999998765443 2
Q ss_pred cceEEccCCC
Q psy13351 187 GINYVIPGND 196 (837)
Q Consensus 187 ~i~ypIP~N~ 196 (837)
..|+.|....
T Consensus 155 ~ad~~l~~~~ 164 (192)
T PRK00414 155 LADIEIRVPH 164 (192)
T ss_pred hCCEEEEeCC
Confidence 4566665555
|
|
| >TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase | Back alignment and domain information |
|---|
Probab=81.27 E-value=14 Score=36.92 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=28.0
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP 185 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~ 185 (837)
...|++|+++-..+ ..+++.|+..|+|||+|+|...+|
T Consensus 71 ~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 71 KKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 46688888864422 345677899999999999977655
|
Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 837 | ||||
| 3fih_B | 218 | Ternary Complex-Bound E.Coli 70s Ribosome. This Ent | 3e-62 | ||
| 1p87_B | 240 | Real Space Refined Coordinates Of The 30s Subunit F | 6e-62 | ||
| 1vs5_B | 241 | Crystal Structure Of The Bacterial Ribosome From Es | 6e-62 | ||
| 2gy9_B | 236 | Structure Of The 30s Subunit Of A Pre-Translocation | 6e-62 | ||
| 1pns_B | 234 | Crystal Structure Of A Streptomycin Dependent Ribos | 6e-55 | ||
| 1i94_B | 255 | Crystal Structures Of The Small Ribosomal Subunit W | 6e-55 | ||
| 1fjg_B | 256 | Structure Of The Thermus Thermophilus 30s Ribosomal | 6e-55 | ||
| 3fic_B | 235 | T. Thermophilus 70s Ribosome In Complex With Mrna, | 6e-55 | ||
| 2e5l_B | 227 | A Snapshot Of The 30s Ribosomal Subunit Capturing M | 1e-54 | ||
| 1x18_E | 231 | Contact Sites Of Era Gtpase On The Thermus Thermoph | 6e-53 | ||
| 3ek5_A | 243 | Unique Gtp-Binding Pocket And Allostery Of Ump Kina | 2e-43 | ||
| 1ybd_A | 239 | Crystal Structure Analysis Of Uridylate Kinase From | 2e-43 | ||
| 3bbn_B | 231 | Homology Model For The Spinach Chloroplast 30s Subu | 1e-41 | ||
| 3nwy_A | 281 | Structure And Allosteric Regulation Of The Uridine | 9e-40 | ||
| 2bnd_A | 241 | The Structure Of E.Coli Ump Kinase In Complex With | 1e-39 | ||
| 2bne_A | 241 | The Structure Of E. Coli Ump Kinase In Complex With | 2e-39 | ||
| 2a1f_A | 247 | Crystal Structure Of Uridylate Kinase Length = 247 | 8e-38 | ||
| 2bnf_A | 241 | The Structure Of E. Coli Ump Kinase In Complex With | 4e-35 | ||
| 1is1_A | 185 | Crystal Structure Of Ribosome Recycling Factor From | 6e-35 | ||
| 1ek8_A | 185 | Crystal Structure Of The Ribosome Recycling Factor | 6e-33 | ||
| 4gd1_Y | 183 | Structures Of The Bacterial Ribosome In Classical A | 8e-33 | ||
| 1ise_A | 185 | Crystal Structure Of A Mutant Of Ribosome Recycling | 4e-32 | ||
| 4a7w_A | 240 | Crystal Structure Of Uridylate Kinase From Helicoba | 2e-31 | ||
| 1eh1_A | 185 | Ribosome Recycling Factor From Thermus Thermophilus | 6e-31 | ||
| 4gfq_A | 209 | 2.65 Angstrom Resolution Crystal Structure Of Ribos | 1e-30 | ||
| 2jjx_A | 255 | The Crystal Structure Of Ump Kinase From Bacillus A | 2e-30 | ||
| 2va1_A | 256 | Crystal Structure Of Ump Kinase From Ureaplasma Par | 1e-29 | ||
| 1z9d_A | 252 | Crystal Structure Of A Putative Uridylate Kinase (U | 8e-29 | ||
| 3mmp_A | 678 | Structure Of The Qb Replicase, An Rna-Dependent Rna | 1e-27 | ||
| 3agp_A | 1289 | Structure Of Viral Polymerase Form I Length = 1289 | 1e-27 | ||
| 1efu_B | 282 | Elongation Factor Complex Ef-TuEF-Ts From Escherich | 5e-27 | ||
| 1wqf_A | 185 | Crystal Structure Of Ribosome Recycling Factor From | 2e-26 | ||
| 1dd5_A | 185 | Crystal Structure Of Thermotoga Maritima Ribosome R | 1e-25 | ||
| 1ge9_A | 184 | Solution Structure Of The Ribosome Recycling Factor | 1e-23 | ||
| 1aip_C | 196 | Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt | 7e-11 | ||
| 1aip_C | 196 | Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt | 1e-04 | ||
| 1y69_8 | 113 | Rrf Domain I In Complex With The 50s Ribosomal Subu | 7e-09 | ||
| 1xb2_B | 291 | Crystal Structure Of Bos Taurus Mitochondrial Elong | 2e-08 | ||
| 1vi6_A | 208 | Crystal Structure Of Ribosomal Protein S2p Length = | 2e-05 | ||
| 1vi5_A | 208 | Crystal Structure Of Ribosomal Protein S2p Length = | 3e-05 | ||
| 1tfe_A | 145 | Dimerization Domain Of Ef-Ts From T. Thermophilus L | 6e-05 | ||
| 1tfe_A | 145 | Dimerization Domain Of Ef-Ts From T. Thermophilus L | 1e-04 | ||
| 3lf9_A | 121 | Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1 | 1e-04 |
| >pdb|3FIH|B Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 218 | Back alignment and structure |
|
| >pdb|1P87|B Chain B, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome Length = 240 | Back alignment and structure |
|
| >pdb|1VS5|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 241 | Back alignment and structure |
|
| >pdb|2GY9|B Chain B, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 236 | Back alignment and structure |
|
| >pdb|1PNS|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 234 | Back alignment and structure |
|
| >pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 255 | Back alignment and structure |
|
| >pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 256 | Back alignment and structure |
|
| >pdb|3FIC|B Chain B, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 235 | Back alignment and structure |
|
| >pdb|2E5L|B Chain B, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via The Shine- Dalgarno Interaction Length = 227 | Back alignment and structure |
|
| >pdb|1X18|E Chain E, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 231 | Back alignment and structure |
|
| >pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram- Negative Phytopathogen Bacterium Length = 243 | Back alignment and structure |
|
| >pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From Neisseria Meningitidis Length = 239 | Back alignment and structure |
|
| >pdb|3BBN|B Chain B, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 231 | Back alignment and structure |
|
| >pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine Monophosphate Kinase From Mycobacterium Tuberculosis Length = 281 | Back alignment and structure |
|
| >pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp Length = 241 | Back alignment and structure |
|
| >pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump Length = 241 | Back alignment and structure |
|
| >pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase Length = 247 | Back alignment and structure |
|
| >pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp Length = 241 | Back alignment and structure |
|
| >pdb|1IS1|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Vibrio Parahaemolyticus Length = 185 | Back alignment and structure |
|
| >pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf) From Escherichia Coli Length = 185 | Back alignment and structure |
|
| >pdb|4GD1|Y Chain Y, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding Length = 183 | Back alignment and structure |
|
| >pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor From Escherichia Coli, Arg132gly Length = 185 | Back alignment and structure |
|
| >pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter Pylori Length = 240 | Back alignment and structure |
|
| >pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus Length = 185 | Back alignment and structure |
|
| >pdb|4GFQ|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Ribosome Recycling Factor (Frr) From Bacillus Anthracis Length = 209 | Back alignment and structure |
|
| >pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus Anthracis (Ba1797) Length = 255 | Back alignment and structure |
|
| >pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum Length = 256 | Back alignment and structure |
|
| >pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase (Ump-Kinase) From Streptococcus Pyogenes Length = 252 | Back alignment and structure |
|
| >pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678 | Back alignment and structure |
|
| >pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289 | Back alignment and structure |
|
| >pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 282 | Back alignment and structure |
|
| >pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Mycobacterium Tuberculosis Length = 185 | Back alignment and structure |
|
| >pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Recycling Factor, Rrf Length = 185 | Back alignment and structure |
|
| >pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor Length = 184 | Back alignment and structure |
|
| >pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 196 | Back alignment and structure |
|
| >pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 196 | Back alignment and structure |
|
| >pdb|1Y69|8 Chain 8, Rrf Domain I In Complex With The 50s Ribosomal Subunit From Deinococcus Radiodurans Length = 113 | Back alignment and structure |
|
| >pdb|1XB2|B Chain B, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 291 | Back alignment and structure |
|
| >pdb|1VI6|A Chain A, Crystal Structure Of Ribosomal Protein S2p Length = 208 | Back alignment and structure |
|
| >pdb|1VI5|A Chain A, Crystal Structure Of Ribosomal Protein S2p Length = 208 | Back alignment and structure |
|
| >pdb|1TFE|A Chain A, Dimerization Domain Of Ef-Ts From T. Thermophilus Length = 145 | Back alignment and structure |
|
| >pdb|1TFE|A Chain A, Dimerization Domain Of Ef-Ts From T. Thermophilus Length = 145 | Back alignment and structure |
|
| >pdb|3LF9|A Chain A, Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1is1a_001_c Length = 121 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Length = 256 | Back alignment and structure |
|---|
Score = 366 bits (942), Expect = e-122
Identities = 102/232 (43%), Positives = 149/232 (64%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAGVHFGH+ + WNPK + YI+ RN IHII+L+KT+ E+ R+I L GT+L
Sbjct: 10 LLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTIL 69
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK+QA+ ++ EA RAGMP+++QRWLGG+LTNFKTI + RL+E++ + I +
Sbjct: 70 FVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEE 129
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
KKE + + +L + + G + + +PDAIF++D AV EA KL IP+I + D
Sbjct: 130 RPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALAD 189
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIME 232
T+ PD ++Y+IPGNDD+ +SI L VD + A+ S + A + E
Sbjct: 190 TDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQE 241
|
| >3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 231 | Back alignment and structure |
|---|
Score = 361 bits (929), Expect = e-120
Identities = 83/217 (38%), Positives = 125/217 (57%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
M+EAGVHFGH TR WNP+MS YI IHIINL +T +A ++ L
Sbjct: 9 MMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFL 68
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
VGTK +A +A A+RA +++++WLGG+LTN+ T +T + + +++ + T G + +
Sbjct: 69 IVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLAR 128
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L K++A + R+ L +GGIK M +PD + I+D A+ E I L IP I ++D
Sbjct: 129 LPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLID 188
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
TN +PD + IP NDD+ SI L +V A + +
Sbjct: 189 TNCNPDLADISIPANDDAIASIRLILTKLVFAICEGR 225
|
| >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247 | Back alignment and structure |
|---|
Score = 243 bits (621), Expect = 8e-75
Identities = 103/224 (45%), Positives = 153/224 (68%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEAL D I+ +I+ + EI E+V G+E+++V+GGGN+ RG ++R D
Sbjct: 17 GEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGD 76
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
+MGMLAT++N LA+ D L ++ + + +MSA + ++Y AIK L E +VVIF+ G
Sbjct: 77 HMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAG 136
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 604
GNPFFTTD+TA LR EI+A+++LKATKVDG+Y+ DP K A +YK +++ EVI K+L
Sbjct: 137 TGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKEL 196
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648
++MD +AF+ RD +PIRVF++ K GAL++V+ G EGT + E
Sbjct: 197 KVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE 240
|
| >3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 8e-75
Identities = 111/222 (50%), Positives = 148/222 (66%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEALM Y I+ +I + E+ E G ++A+VIGGGNI RG +DR T D
Sbjct: 18 GEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVTGD 77
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
+MGMLAT+IN+LA+ D L K G VMSAI I E +I AI++LE+G++ IFA G
Sbjct: 78 HMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLEKGRIAIFAAG 137
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 604
GNPFFTTD+ AALRA EI A+++LKATKVDG+Y+ DP K A+ Y +T+DEVI + L
Sbjct: 138 TGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQGL 197
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
E+MD+ AF+ RD LP+R+F + + G L R++ G GTLV
Sbjct: 198 EVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLV 239
|
| >1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239 | Back alignment and structure |
|---|
Score = 239 bits (610), Expect = 2e-73
Identities = 123/223 (55%), Positives = 166/223 (74%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GE+LM D + IN I + EI+E+V G+++ IV+GGGNI RG+S + ++DR+TAD
Sbjct: 16 GESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATAD 75
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
YMGM+AT++N+LAL D GI + V SA+S+++ E+Y AI+YLEEGKVVIFA G
Sbjct: 76 YMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAG 135
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 604
GNPFFTTDT AALR AE+ +++LKAT VDG+Y +DP K SA Y+ ITFDE + K L
Sbjct: 136 TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNL 195
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647
++MD+TAF+ CR++KL I VF I K G+LKRVI G++EGTLV+
Sbjct: 196 KVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238
|
| >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281 | Back alignment and structure |
|---|
Score = 240 bits (614), Expect = 2e-73
Identities = 92/222 (41%), Positives = 146/222 (65%), Gaps = 1/222 (0%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GE G ++ ++ + +I+++V G+++A+VIGGGN RG + ++R+ +D
Sbjct: 59 GEMFG-GGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSD 117
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
YMGML T++NSLAL D L K GI++ V +AI++ + E Y+PL A+++LE+G+VVIF G
Sbjct: 118 YMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAG 177
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 604
+G P+F+TDTTAA RA EI A+++L A VDG++ DP A + ++ EV+ + L
Sbjct: 178 MGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGL 237
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
+ D+TAFS C D +PI VF+++ G + R + G+ GTLV
Sbjct: 238 RVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLV 279
|
| >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256 | Back alignment and structure |
|---|
Score = 239 bits (610), Expect = 4e-73
Identities = 96/258 (37%), Positives = 153/258 (59%), Gaps = 6/258 (2%)
Query: 393 AAMKPIALSSDQIPKKIIEKEYSLAVLKAQQL-GEALMKGDAYNINSSIIKNIISEISEI 451
++ SS +P+ V+K + G L + D+ I+ I ++ +I +I
Sbjct: 3 SSHHHHHHSSGLVPRGSHMMRKQRIVIK---ISGACLKQNDSSIIDFIKINDLAEQIEKI 59
Query: 452 VSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 511
I ++IV+GGGNI RG K ++DR+ AD MGM+ATIIN LAL + LN + + V
Sbjct: 60 SKKYI-VSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIV 118
Query: 512 MSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA 571
+SAI +K + N K +E+ +V+IF G G P+FTTD+ AA+RAAE ++ IIL
Sbjct: 119 LSAIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMG 178
Query: 572 TK-VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKS 630
VDG+Y+SDP +A Y+ ITF+ +++ L++MD+TA + C++ + + VF+I K
Sbjct: 179 KNGVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKP 238
Query: 631 GALKRVIEGKNEGTLVYE 648
A+ V+E KN+ T+V +
Sbjct: 239 NAIVDVLEKKNKYTIVSK 256
|
| >4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240 | Back alignment and structure |
|---|
Score = 237 bits (605), Expect = 1e-72
Identities = 104/224 (46%), Positives = 150/224 (66%), Gaps = 2/224 (0%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS-NKIQNIDRSTA 483
GEAL + + I+ ++ +I EI +V IE+ IVIGGGNI RG+S + I R++
Sbjct: 16 GEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSG 75
Query: 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 543
DYMGMLAT+IN++A+ + L G+ + V SAI I++ ESYI AI++LE+G+VVIF
Sbjct: 76 DYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGA 135
Query: 544 GIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 603
G GNPFFTTDT A LRA EI +++I+KATKVDGIY+ DPNK A +++++ +
Sbjct: 136 GTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGD 195
Query: 604 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEG-KNEGTLV 646
+E+MD TA S +D KLPI V ++ K G L +VI+ + ++V
Sbjct: 196 IEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239
|
| >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 6e-72
Identities = 94/223 (42%), Positives = 148/223 (66%), Gaps = 1/223 (0%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEAL I+ ++ I EI+E+ G+++A+VIGGGN+ RG +DR AD
Sbjct: 16 GEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQAD 75
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
Y GML T++N+L + D L G+ + V +AI ++ E YI A+++LE+ ++V+F G
Sbjct: 76 YTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAG 135
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKAT-KVDGIYNSDPNKCLSAIIYKKITFDEVISKK 603
IG+P+F+TDTTAALRAAEI+A+ IL A VDG+YN+DP K +A+ + ++T EVI +
Sbjct: 136 IGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRG 195
Query: 604 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
L+IMD+TA + D + + VF++ ++G ++RV+ G++ GT V
Sbjct: 196 LKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTV 238
|
| >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270 | Back alignment and structure |
|---|
Score = 235 bits (602), Expect = 8e-72
Identities = 41/229 (17%), Positives = 87/229 (37%), Gaps = 13/229 (5%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRST 482
G++++ + ++ EI +L I G G R + + +
Sbjct: 45 GQSVIDRGRAAVYP-----LVDEIVAARK-NHKLLIGTGAGTRARHLYSIAAGLGLPAGV 98
Query: 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 542
+G N+ L +L K GI + +S + + + K+ +
Sbjct: 99 LAQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGMPPYKLWMRP 158
Query: 543 GGIGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS 601
G P + TD L A + + ++ DG+Y ++P A +I+ DE+ +
Sbjct: 159 AAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKA 218
Query: 602 KKLE--IMDSTAFSFCRDQK--LPIRVFSIIKSGALKRVIEGKNEGTLV 646
K L I++ + + ++V + + G L R + G++ GT++
Sbjct: 219 KGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTII 267
|
| >2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255 | Back alignment and structure |
|---|
Score = 230 bits (587), Expect = 6e-70
Identities = 92/224 (41%), Positives = 136/224 (60%), Gaps = 2/224 (0%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
G AL + NS +++I +EI IV GIE++IVIGGGNI RG + IDR AD
Sbjct: 21 GGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEAD 80
Query: 485 YMGMLATIINSLALFDIL-NKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 543
+G L TIINSL L +L +K+ VM++I E YI L A+ +L+ G +VIF G
Sbjct: 81 NIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGG 140
Query: 544 GIGNPFFTTDTTAALRAAEIKAEIILKATK-VDGIYNSDPNKCLSAIIYKKITFDEVISK 602
G G PF TTD + RA E+ ++ IL A + VDG++ SDP SA +Y+K+ +++V+ +
Sbjct: 141 GNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ 200
Query: 603 KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
+++MD A RD LP VF+ + G ++R+ G++ GTL+
Sbjct: 201 NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLI 244
|
| >1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G Length = 185 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 2e-69
Identities = 72/184 (39%), Positives = 126/184 (68%)
Query: 652 MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITL 711
M + ++ T+ M ++++L+ NL +RTGRAN +L +++V+Y+ L +IA +T
Sbjct: 1 MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTA 60
Query: 712 FNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKN 771
+ T+ +Q +++ I+KAI +++LGLNP+ +G+ +Y++IPPLT+ERR+++V+ ++
Sbjct: 61 PDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQ 120
Query: 772 ITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKE 831
EE +++IR IRR++ + LKKL K LS D RA+ +IQK+TD+FI + +QL KE
Sbjct: 121 YAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKE 180
Query: 832 KEIL 835
+EIL
Sbjct: 181 QEIL 184
|
| >1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y Length = 185 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 8e-69
Identities = 79/183 (43%), Positives = 132/183 (72%)
Query: 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 713
I++IKK+ +++M +++ LK NL KVRTGRA+ +L I V+Y+ T L ++AN+ +
Sbjct: 2 INEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAED 61
Query: 714 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 773
+ T++I F+KE++ ++KAI ++LGLNP G II V +PPLT+ERR+++VK+++
Sbjct: 62 ARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEA 121
Query: 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833
E ++++R IRRD+N +LK LLK+K +S D + +AQ +IQKLTD + +I+++L KEKE
Sbjct: 122 EGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKE 181
Query: 834 ILT 836
++
Sbjct: 182 LME 184
|
| >4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis} Length = 209 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 8e-69
Identities = 73/190 (38%), Positives = 120/190 (63%), Gaps = 1/190 (0%)
Query: 647 YEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKI 706
++ M + K + +KM + L VR GRA+ +LD +QV Y+ T ++++
Sbjct: 20 FQSNAMG-QQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQL 78
Query: 707 ANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIV 766
ANIT+ + + IQP++K I+KAI +A+LGLNP+ G +I ++ P LT+ERR ++V
Sbjct: 79 ANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLV 138
Query: 767 KLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQL 826
K++K EE K+++R +RRD N++LKKL K ++ D+ DIQK TDK+I +++++
Sbjct: 139 KVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEI 198
Query: 827 LINKEKEILT 836
NKEKEI+
Sbjct: 199 AKNKEKEIME 208
|
| >1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A Length = 185 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 1e-68
Identities = 64/183 (34%), Positives = 111/183 (60%)
Query: 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 713
I + + ++KM + + +++L +RTGRAN GM I + Y+ T + ++A+I +
Sbjct: 2 IDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPE 61
Query: 714 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 773
+ + I+P+E I+ AI ++LG+NPT G +I V++P LT+ERR E+VK K+
Sbjct: 62 ARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKG 121
Query: 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833
EE K+S+R IRR + E L ++ K D RA+ D+ K T +++ +I++L+ +KE E
Sbjct: 122 EEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGE 181
Query: 834 ILT 836
+L
Sbjct: 182 LLE 184
|
| >1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8 Length = 185 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 2e-68
Identities = 73/182 (40%), Positives = 126/182 (69%)
Query: 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 713
ISDI+K+ + +M ++ K + K+RTGRA+ +LD I V+Y+ T L ++A++T+ +
Sbjct: 2 ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVED 61
Query: 714 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 773
S T+ I F++ MS ++KAI ++LGLNP G+ I V +PPLT+ERR+++ K+++
Sbjct: 62 SRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEA 121
Query: 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833
E+ ++++R + RD+N+ +K LLK+K +S D++ R+Q D+QKLTD I +I L +KE E
Sbjct: 122 EQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAE 181
Query: 834 IL 835
++
Sbjct: 182 LM 183
|
| >1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C Length = 185 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 2e-68
Identities = 68/182 (37%), Positives = 121/182 (66%)
Query: 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 713
++ K K+KM T++ +++ L+K+RTG+ + +L+ I+V Y+ T + ++A I++
Sbjct: 2 VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISE 61
Query: 714 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 773
T+ I+P++K + S+I+KAIN ++LGLNP GN+I + P T E+RE+ VK K I
Sbjct: 62 ERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIV 121
Query: 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833
EE KI+IR IRR+ + +K+ K ++ D+ R + +IQKLTD+FI +++++ K++E
Sbjct: 122 EEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEE 181
Query: 834 IL 835
I+
Sbjct: 182 IM 183
|
| >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 2e-67
Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 29/233 (12%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRST 482
G L+ + N + IK I +++++ E+A+V+GGG + R + N +
Sbjct: 28 GSVLV-PE--NPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETF 83
Query: 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 542
D++G+ T N++ L L + V A K ++ K+ +
Sbjct: 84 KDFIGIQITRANAMLLIAALREKAYPVVVED------------FWEAWKAVQLKKIPVMG 131
Query: 543 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-- 600
G +P TTD AAL A +KA++++ T VDG+Y +DP K +A KK+ +E++
Sbjct: 132 GT--HPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEI 189
Query: 601 -------SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
+ ++D A + V + L RVI+G + GT +
Sbjct: 190 VGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 242
|
| >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 2e-67
Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 31/234 (13%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRST 482
G+ + + + + I E+ G + IV GGG+ R + I +
Sbjct: 9 GKFFDEDNV-----DNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAY 63
Query: 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 542
D +G+ A+ +N+ + L + I+ GKVV+
Sbjct: 64 LDLLGIWASRLNAYLVMFSLQDLAYMHVP------------QSLEEFIQDWSHGKVVVTG 111
Query: 543 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE---- 598
G P +T AAL A ++ ++ AT VDG+Y DP + +T +
Sbjct: 112 GF--QPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKI 169
Query: 599 ------VISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
V + E++D A K+ + V + K + +++G+ +++
Sbjct: 170 LEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSII 223
|
| >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 2e-62
Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 34/233 (14%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRST 482
G L ++ I+ I + ++ +V+GGG + R + +
Sbjct: 9 GSVLS-NES-----EKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARELGASETF 61
Query: 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 542
DY+G+ AT +N++ L + + + A + + +VV+
Sbjct: 62 CDYIGIAATRLNAMLLISAIPSAAK-------------KVPVDFMEAEELSKLYRVVVMG 108
Query: 543 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK 602
G P TTD TAAL A IKA++ + AT VDG+Y++DP SA+ Y +++ +++
Sbjct: 109 GT--FPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEI 166
Query: 603 ---------KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
++D A K+ V + + ++G+ GT++
Sbjct: 167 VSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTVI 218
|
| >1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1 Length = 184 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 3e-62
Identities = 69/183 (37%), Positives = 118/183 (64%), Gaps = 4/183 (2%)
Query: 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 713
+ DI K ++ M ++ K + +RT RA+ +++ I+V+Y+ + ++ I++
Sbjct: 5 LEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPE 64
Query: 714 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 773
+ I IQ +++ I+KAI L LNPT+QGN+I V++PPLT+ERR E+V+L+ IT
Sbjct: 65 HNQIVIQVWDQNAVPAIEKAIR-EELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKIT 123
Query: 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833
EE ++ +R +RR++ E +++L +S D + RA +QKLTDK+I EIN+L+ KEKE
Sbjct: 124 EEARVRVRNVRREAKEMIEELEG---ISEDEKKRALERLQKLTDKYIDEINKLMEAKEKE 180
Query: 834 ILT 836
I++
Sbjct: 181 IMS 183
|
| >1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Length = 291 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 4e-60
Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 37/235 (15%)
Query: 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILN----ISNRNAKDG 270
+ + +LR KT + CKKAL G L +AE L + K+ + + R K+G
Sbjct: 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEG 63
Query: 271 VIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLK----- 325
+I + LVE+NCETDFV++N +F + +++A + DQL+
Sbjct: 64 LIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLN 123
Query: 326 ---------IKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN--NLISYLHDN----- 369
++ ++ I ++GEN+ ++R K + SY+H
Sbjct: 124 SSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPS 183
Query: 370 -------KIGVIVEYNGDNESAV-----KDVAMHIAAMKPIALSSDQIPKKIIEK 412
K G +V A + + H+ M P+++ S +
Sbjct: 184 LHNLVLGKYGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAE 238
|
| >1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Length = 208 | Back alignment and structure |
|---|
Score = 191 bits (486), Expect = 4e-56
Identities = 42/218 (19%), Positives = 85/218 (38%), Gaps = 51/218 (23%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 59
L AGVH G Q + + M +IF R + ++++++ K A +++ + + +
Sbjct: 16 YLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSR--YEPSKI 71
Query: 60 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 119
L V ++ A + + G +I R++ G LTN
Sbjct: 72 LLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNP----------------------- 108
Query: 120 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 179
+ + P+ +F+ D K AVSEA + IP++ +
Sbjct: 109 -----------------------MLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALC 145
Query: 180 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
D+N+S ++ VIP N+ +++A+ + +
Sbjct: 146 DSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIR 183
|
| >2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Length = 241 | Back alignment and structure |
|---|
Score = 185 bits (470), Expect = 2e-53
Identities = 49/233 (21%), Positives = 78/233 (33%), Gaps = 51/233 (21%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 59
+L + H T N +M YI N IH IN+E+T + A R I + + +
Sbjct: 13 LLASNCH--QATINLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAAVQHPEDVM 70
Query: 60 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 119
+ R I RW G LTN++T+K
Sbjct: 71 VVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLK------------------- 111
Query: 120 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 179
P + + D A+ EA +NIP+I +
Sbjct: 112 ---------------------------YEEPRVLIVTDPRSDFQAIKEASYVNIPVIALC 144
Query: 180 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIME 232
D++ ++ VIP N+ S +SI++ I + GEL +M
Sbjct: 145 DSDSPLAYVDVVIPCNNRSTESISMIYWMIAREVKILR--GELSKDEEWEVMV 195
|
| >3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Length = 252 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 5e-51
Identities = 40/218 (18%), Positives = 71/218 (32%), Gaps = 50/218 (22%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 59
+L A H G + Y+F R + +H+IN+ KT A R I + + +
Sbjct: 17 LLAANTHLGARN--VQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIP-NPEDV 73
Query: 60 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 119
+ + ++ + + A G I R+ G TN+ T
Sbjct: 74 VAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITR-------------------- 113
Query: 120 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 179
P + + D A+ EA +NIP+I +
Sbjct: 114 --------------------------SFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALT 147
Query: 180 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
D + + ++ IP N+ SI L + L +
Sbjct: 148 DLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLR 185
|
| >2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 295 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 2e-49
Identities = 42/233 (18%), Positives = 78/233 (33%), Gaps = 52/233 (22%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 59
L AG H G + +M YI+ + + I+IINL++T A R I + + +
Sbjct: 18 FLAAGTHLGGTN--LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIE-NPADV 74
Query: 60 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 119
+ ++ + + A G I R+ G TN
Sbjct: 75 SVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTN------------------------ 110
Query: 120 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 179
I+ P + + D ++EA +N+P I +
Sbjct: 111 ----------------------QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALC 148
Query: 180 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIME 232
+T+ ++ IP N+ A S+ L + L + G + + +M
Sbjct: 149 NTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMR--GTISREHPWEVMP 199
|
| >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 6e-49
Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 34/236 (14%)
Query: 431 GDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRSTADYMGM 488
G + + I ++ E+ +++ L I+ G G R + + + + +
Sbjct: 48 GRVMDRGADAILPLVEELRKLLP-EHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAA 106
Query: 489 LATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG----- 543
N L +L G+ + +L + V+ +
Sbjct: 107 SEAGQNGHILAAMLASEGV----------SYVEHPTVADQLAIHLSATRAVVGSAFPPYH 156
Query: 544 -----GIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCL--SAIIYKKITF 596
G P DT A L A A + VDGIY +DPN A + +
Sbjct: 157 HHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSA 216
Query: 597 DEVISKK------LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
++ + ++D A + + ++V + + G L + G++ GTL+
Sbjct: 217 TDLAKSEGPLPVDRALLDVMATARHIE---RVQVVNGLVPGRLTAALRGEHVGTLI 269
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 167 bits (423), Expect = 3e-46
Identities = 46/260 (17%), Positives = 79/260 (30%), Gaps = 62/260 (23%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 59
ML A VH G + + +M Y++ R + I+IINL KT + A R I + + +
Sbjct: 22 MLAADVHLGTKN--CDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIE-NPQDI 78
Query: 60 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 119
+ + + + A G I R G TN
Sbjct: 79 IVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTN------------------------ 114
Query: 120 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 179
++ P + + D + E+ NIP I
Sbjct: 115 ----------------------QLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFC 152
Query: 180 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIM-------- 231
DT+ ++ IP N+ +SI + L + G + +M
Sbjct: 153 DTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMR--GTILPGHKWDVMVDLFFYRD 210
Query: 232 --ECKKALIEANGKLSKAEE 249
E K+ E ++
Sbjct: 211 PEEAKEQEEEEAALVAPDYG 230
|
| >3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Length = 253 | Back alignment and structure |
|---|
Score = 162 bits (410), Expect = 4e-45
Identities = 40/218 (18%), Positives = 73/218 (33%), Gaps = 50/218 (22%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 59
L AG H G + +M YI+ + + I+IINL++T A R I + + +
Sbjct: 51 FLAAGTHLGGTN--LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIE-NPADV 107
Query: 60 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 119
+ ++ + + A G I R+ G TN
Sbjct: 108 SVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ----------------------- 144
Query: 120 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 179
I+ P + + D ++EA +N+P I +
Sbjct: 145 -----------------------IQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALC 181
Query: 180 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
+T+ ++ IP N+ A S+ L + L +
Sbjct: 182 NTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMR 219
|
| >3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8 Length = 123 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 4e-41
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 715 HTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITE 774
H SI K+ + KA+ L+ + P T+ER ++ +K+++ E
Sbjct: 5 HHGSISDIRKDAEVRMDKAVEAFKNKLDKF--KAAVRKVFP--TEERIKDWLKIVRGEAE 60
Query: 775 ETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834
+ ++++R + RD+N+ L K+K ++ + ++ +D+QKLTD I +I L + E +
Sbjct: 61 QARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIEAALADMEAWL 120
Query: 835 L 835
Sbjct: 121 T 121
|
| >3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene} Length = 121 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-37
Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 719 IQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 778
I +K+ + K++ L+ G T+ERR+++VK+++ E ++
Sbjct: 2 INEIKKDAQERMDKSVEALKNNLSKVRTGG-------GGTEERRKDLVKIVRGEAEGGRV 54
Query: 779 SIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILT 836
++R I RD+ +L L K+K ++ + +A ++IQKLTD + +I+++L KEKE++
Sbjct: 55 AVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVLAAKEKELME 112
|
| >1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 4e-28
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 216 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIY 275
+ + +LR T A +M+ K+AL +A KA ++LR + K ++R A++G+I Y
Sbjct: 4 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHY 63
Query: 276 ISE--KVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP--INLDQLNNLKIKN--N 329
I +VG LVE+NCETDFVA+N F +K +A I P ++ +++ +++
Sbjct: 64 IHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQ 123
Query: 330 LLTVDEKCKELISRIGENIKIRRFKLFKTNNNLIS--YLHDNKIGV 373
+ + +I E I R K + L+ ++ D+K+ V
Sbjct: 124 IYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKV 169
|
| >1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 5e-18
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 335 EKCKELISRIGENIKIRRFKLFKTNNNLISYLH-DNKIGVIVEYNGDNESA--------- 384
EK +L+ G ++ + Y+H + ++GV+VE N + +
Sbjct: 33 EKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNL 92
Query: 385 VKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 425
KD+AMHIA M P +S+++IP + +EKE + + A G
Sbjct: 93 AKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEG 133
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-26
Identities = 82/219 (37%), Positives = 120/219 (54%), Gaps = 17/219 (7%)
Query: 212 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNA 267
A + A V ELR +T A +M+CKKAL EANG + A E +R IK KK N+ A
Sbjct: 2 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNV----A 57
Query: 268 KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIK 327
DGVI I G ++E+NC+TDFVAK+ F F+ K+ +++ L
Sbjct: 58 ADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLK----- 112
Query: 328 NNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKD 387
+E+ L+++IGENI IRR + + L SY H +IGV+V G +E VK
Sbjct: 113 ---AQFEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVLVAAKGADEELVKH 168
Query: 388 VAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGE 426
+AMH+AA KP + + + +++EKEY + + A Q G+
Sbjct: 169 IAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGK 207
|
| >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 48/250 (19%), Positives = 88/250 (35%), Gaps = 30/250 (12%)
Query: 425 GEALM-KGDAYNINSSIIKNIISEISEIVSC------GIELAIVIGGGNICRGISNKIQN 477
G L K Y+I ++ I EI + I+L +V GGG ++ K
Sbjct: 15 GSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLK 74
Query: 478 IDRSTADYMGMLATI---------INSLALFDILNKSGIISHVMSAISIEKFLESYIPLN 528
I+ ++ M N++ + + + + + + + +
Sbjct: 75 IEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTS 134
Query: 529 AIKYLEEGKVV-------IFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSD 581
AIK + + +V + G + D A E+KA++IL AT VDG+ +
Sbjct: 135 AIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDN 194
Query: 582 PNKCLSAIIYKKITFDEVISKKLEIMDSTA-----FSFCRDQKLPIRVFSIIKSGALKRV 636
+ I I +D T R K VF+ K+ + +
Sbjct: 195 KP--IKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKA 252
Query: 637 IEGKNEGTLV 646
+ G+ EGT +
Sbjct: 253 LLGEVEGTEI 262
|
| >1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1 Length = 84 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 2e-23
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 682 GRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKKAINEANLG 740
G + LD+I V + L +I I++ + I + E ++ KAI E+ +
Sbjct: 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60
Query: 741 LNPTIQGNIIYVSIPPLTKERRE 763
LNP ++G +I V IP +T
Sbjct: 61 LNPEVEGTLIRVPIPKVTSGPSS 83
|
| >1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Length = 145 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 8e-14
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 10/72 (13%)
Query: 364 SYLH-DNKIGVIVEYNGDN---------ESAVKDVAMHIAAMKPIALSSDQIPKKIIEKE 413
Y+H + ++GV+VE N + ++ KD+AMHIA M P +S+++IP + +EKE
Sbjct: 8 HYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKE 67
Query: 414 YSLAVLKAQQLG 425
+ + A G
Sbjct: 68 RQIYIQAALNEG 79
|
| >1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Length = 145 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-09
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 48/139 (34%)
Query: 267 AKDGVIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP--------- 315
A++G+I YI +++VG LVE+NCETDFVA+N F +K +A I P
Sbjct: 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIP 60
Query: 316 ---------INLDQLNNL--------KI--------------------KNNLLTVDEKCK 338
I + N KI K++ + V E +
Sbjct: 61 AEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQ 120
Query: 339 ELISRIGENIKIRRFKLFK 357
+ I++IGENI +RRF F+
Sbjct: 121 QAIAKIGENIVVRRFCRFE 139
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 3e-12
Identities = 84/578 (14%), Positives = 169/578 (29%), Gaps = 159/578 (27%)
Query: 31 HIINLEKTLYMYEKAIRYIYQLGFSKGTLL---FVGTKRQAR-----GVIANEAVRAGMP 82
HII + ++ SK + FV + I E + M
Sbjct: 53 HIIMSKDA----VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 83 ---FIDQRWLGGLLTN---------------FKTIKTSIQRLKEMDLFITNG------SI 118
+I+QR L N + ++ ++ L+ + +G +
Sbjct: 109 TRMYIEQR---DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 119 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 178
++ + L Y+ Q K+ IF +++ + L ++
Sbjct: 166 --VA-LDVCLSYKVQCKM-------------DFKIFWLNLKNCNSPETVLEMLQ-KLLYQ 208
Query: 179 VDTNHS--PDGINYVIPGNDDSAKS------------IAL------YTKGIVDAF-LDAK 217
+D N + D I S ++ L +AF L K
Sbjct: 209 IDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 218 TVGELRSKT----LAPIMECKKALIEANGKLSKAE--EILRIKLGKKILNISN----RNA 267
+ R K L+ +L + L+ E +L K L+ R
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-----KYLDCRPQDLPREV 322
Query: 268 KDG---VIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQL--- 321
++I I+E S+ + D K+ K + I + P ++
Sbjct: 323 LTTNPRRLSI-IAE---SIRDGLATWDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 322 -----NNLKIKNNLLTV-----DEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKI 371
+ I LL++ + ++ N + + K +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVV----VNKLHKYSLVEKQPKESTISIPS--- 430
Query: 372 GVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKG 431
+ +E E + A+H + I++ Y++
Sbjct: 431 -IYLELKVKLE---NEYALH---------------RSIVDH-YNIP-KTFDSDDLIPPYL 469
Query: 432 DAYNINSSI---IKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGM 488
D Y S I +KNI E E ++ + + + R + KI++ + +
Sbjct: 470 DQY-FYSHIGHHLKNI--EHPERMTLFRMVFL-----DF-RFLEQKIRHDSTAWNASGSI 520
Query: 489 LATIINSLALFD--ILNKSGIISHVMSAISIEKFLESY 524
L T+ L + I + +++A I FL
Sbjct: 521 LNTLQQ-LKFYKPYICDNDPKYERLVNA--ILDFLPKI 555
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 7e-11
Identities = 99/688 (14%), Positives = 208/688 (30%), Gaps = 171/688 (24%)
Query: 196 DDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKL 255
D K I+ F DA +CK LSK EEI
Sbjct: 8 DFETGEHQYQYKDILSVFEDA----------FVDNFDCKDVQDMPKSILSK-EEI----- 51
Query: 256 GKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFS-KKIAKLITENT 314
I+ + + + + K +V+ E + + N +F+ K + + T
Sbjct: 52 -DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 315 PINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVI 374
+ ++Q + L N + K +SR+ +K+R+ L + L K V+
Sbjct: 110 RMYIEQRDRLYNDNQVFA-----KYNVSRLQPYLKLRQ-ALLE--------LRPAK-NVL 154
Query: 375 VEYNGDN--------ESAVKDVAMHIAAMKPI---ALSSDQIPKKIIEKEYSLAVLKAQQ 423
++ G + I L + P+ ++E L
Sbjct: 155 ID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 424 LGEALMKGDAYNINSSIIKNIISEI---SEIVSCGIELAIVIGGGNICRGISNKIQNIDR 480
+ I+ + + +C L ++ N+ +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVL---LNVQ----------NA 256
Query: 481 STADYMG----MLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEG 536
+ +L T + D L+ + + IS++ + P +E
Sbjct: 257 KAWNAFNLSCKILLTTRFK-QVTDFLS-----AATTTHISLDHHSMTLTP-------DEV 303
Query: 537 KVVIFAGGIGNPFFT----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYK 592
K + + TT R + I I DG+ D +K
Sbjct: 304 KS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR------DGLATWDN--------WK 348
Query: 593 KITFD---EVISKKLEIMDST-------AFS-FCRDQKLPIRVFSIIKSGALKRVIEGKN 641
+ D +I L +++ S F +P + S+I +K +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM--- 405
Query: 642 EGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLT 701
++++ + K L +++ K+ + +I ++ L
Sbjct: 406 ----------VVVNKLHK----YSL-----VEKQPKESTIS------IPSIYLELKVKLE 440
Query: 702 KLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPP-LTKE 760
+ H + + I K ++ L P Y I L
Sbjct: 441 NEYAL--------HRSIVDHYN-----IPKTFDSD---DLIPPYLDQYFYSHIGHHLKNI 484
Query: 761 RREEIVKLIKNITEETKISIRKIRRD-SNENLKKLLKNKILSVDNEYR-------AQYDI 812
E + L + + + + +KIR D + N + N + + Y+ +Y+
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPKYE- 542
Query: 813 QKLTD--KFILEINQ-LLINKEKEILTL 837
+ + F+ +I + L+ +K ++L +
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 8e-06
Identities = 105/669 (15%), Positives = 204/669 (30%), Gaps = 181/669 (27%)
Query: 106 LKEMDLFITNGSIRK-LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI----FIIDVGY 160
+ D + LSK+E I ++ + DA+ +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEE-----------------IDHIIMSKDAVSGTLRLFWTLL 72
Query: 161 HKGA------VSEAIKLNIPI----IGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIV 210
K V E +++N I S Y I D ++ K V
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAKYNV 131
Query: 211 DAFLDAKTVGELRSKTLAPIMECKKALIEAN-------------GKLSKAEEILR----- 252
R + P ++ ++AL+E GK A ++
Sbjct: 132 S-----------RLQ---PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 253 IKLGKKI--LNISNRNAKDGVIAIY--ISEKVGSLVEINCETDFVAKNN-EFIKFSKKIA 307
K+ KI LN+ N N+ + V+ + + ++ + K I+ ++
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELR 235
Query: 308 KLITENT-PINLDQLNNLKIKNNLLTVDEKCKELI-SR---IGENIKIRRFKLFKTNNNL 362
+L+ L L N++ + CK L+ +R + + + +++
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 363 ISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEK----EYSLAV 418
++ D ++++Y + + P LS I + I + + V
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLS--IIAESIRDGLATWDNWKHV 350
Query: 419 LKAQQLGEALMKGDAYNINSSIIKNIISEIS--EIVSCGIELAIVIGGGNICRGISNKIQ 476
+ ++II++ ++ + E L++ + I +
Sbjct: 351 NCDKL--------------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILL 392
Query: 477 NI---DRSTADYMGMLATIIN-SLALFDILNKSGIIS-HVMSAISIEKFLESYIPLNAIK 531
++ D +D M ++ + SL K IS SI +LE + L
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIP-----SI--YLELKVKLENEY 443
Query: 532 YLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG-IYNSDPNKCLSAII 590
L + ++ I F + D L +D Y+ I
Sbjct: 444 ALH--RSIVDHYNIPKTFDSDD---------------LIPPYLDQYFYSH--------IG 478
Query: 591 Y--KKITFDEVIS--KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
+ K I E ++ + + +D F F QK I
Sbjct: 479 HHLKNIEHPERMTLFRMV-FLD---FRFLE-QK-------IRHDSTAWNASGSILNTLQQ 526
Query: 647 YEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKI 706
+ Y I D ++++N I + L K+ N+ I KY T LL+I
Sbjct: 527 LKFYKPYICD-NDPKYERLVNAI---LDFLPKIEE---NL-----ICSKY----TDLLRI 570
Query: 707 ANITLFNSH 715
A L
Sbjct: 571 A---LMAED 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-05
Identities = 66/431 (15%), Positives = 134/431 (31%), Gaps = 152/431 (35%)
Query: 15 WNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIY------QLGFSKG---TLL--FVG 63
N K + F KI + K + + A + + + +LL ++
Sbjct: 254 QNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 64 TK-----RQAR-------GVIANEAVRAGMPFIDQRWLGGLLTNFK---------TIKTS 102
+ R+ +IA E++R G+ W N+K I++S
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIA-ESIRDGL----ATW-----DNWKHVNCDKLTTIIESS 362
Query: 103 IQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK 162
+ L+ + RK+ + +L ++F
Sbjct: 363 LNVLEPAEY-------RKM--------FD---RL---------------SVFPPSA---- 385
Query: 163 GAVSEAIKLNIP--IIGVVDTNHSPDGINYVIPGNDDSAKSIAL-----YTKGIVDAFLD 215
+IP ++ ++ + + V+ N S+ T I +L+
Sbjct: 386 ---------HIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 216 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIY 275
K +L ++ +++++ I ++ D +
Sbjct: 435 LKV--KLENEY-----ALHRSIVDH----------YNIPKTFDSDDLI-PPYLDQYFYSH 476
Query: 276 I---------SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPIN-----LDQL 321
I E++ + DF F++ K+ ++T N L+ L
Sbjct: 477 IGHHLKNIEHPERMTLFRMV--FLDF-----RFLE-----QKIRHDSTAWNASGSILNTL 524
Query: 322 NNLKI-KNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDN--KIGVIVEYN 378
LK K + D K + L++ I + F L K NLI + + +I ++ E
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILD------F-LPKIEENLICSKYTDLLRIALMAEDE 577
Query: 379 GDNESAVKDVA 389
E A K V
Sbjct: 578 AIFEEAHKQVQ 588
|
| >2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Length = 64 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 3e-11
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDG 270
+ + +LR KT + CKKAL G L +AE L + K+ + + G
Sbjct: 9 SKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64
|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 5e-08
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 31/133 (23%)
Query: 531 KYLEEGKVVIFAG--GIG--NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 580
+ L+EGK+ I AG G+ TT DTTA AA + A++ + VDG+Y +
Sbjct: 123 EALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTA 182
Query: 581 DPNKCLSAIIYKKITFDEVISKKLE-------IMDSTAFSFCRDQKLPIRVFSIIKSGAL 633
DP +A +K++F+E+ LE I+ + + R +P+RV S
Sbjct: 183 DPRIVPNAQKLEKLSFEEM----LELAAVGSKILVLRSVEYARAFNVPLRVRSSYS---- 234
Query: 634 KRVIEGKNEGTLV 646
+ GTL+
Sbjct: 235 ------NDPGTLI 241
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 531 KYLEEGKVVIFAG--GIGNPF---FTT------DTTAALRAAEIKAEIILKATKVDGIYN 579
+L EGKVV+ AG GI + TT DT+A AA +KA+ T V GI
Sbjct: 123 HHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILT 182
Query: 580 SDPNKCLSAIIYKKITFDE 598
+DP A + +IT DE
Sbjct: 183 TDPRLVPEAQLMAEITCDE 201
|
| >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* Length = 286 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 5e-07
Identities = 22/185 (11%), Positives = 58/185 (31%), Gaps = 14/185 (7%)
Query: 430 KGDAYNINSSIIKNIISEISEIVSCGIELAIVI-GGGNICRGISNKIQNIDRSTADYMGM 488
K + +++ + + + ++I GGG G + + +
Sbjct: 38 KDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHDSTHAFSLAGLTE 97
Query: 489 LATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIK----YLEEGKVVIFAG- 543
+ + L G+ + + ++ L + IP + L+ G + + AG
Sbjct: 98 ATFEVKKRWA-EKLRGIGVDAFPLQLAAMC-TLRNGIPQLRSEVLRDVLDHGALPVLAGD 155
Query: 544 -----GIGNPFFTTDTTAALRAAEIKAEI-ILKATKVDGIYNSDPNKCLSAIIYKKITFD 597
F++D + ++ + ++ T VDGI + +
Sbjct: 156 ALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPE 215
Query: 598 EVISK 602
+ +
Sbjct: 216 QAYAA 220
|
| >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 36/242 (14%)
Query: 430 KGDAYNINSSIIKNIISEISEIVSCGIELAIV----IGGGNICRGISNKIQNIDRSTADY 485
K + I++I+ +S +L V G+I + ++
Sbjct: 18 KSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSS-- 71
Query: 486 MGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAI----KYLEEGKV--- 538
+G + L ++ + +I M IS+ Y +Y++ G V
Sbjct: 72 IGYSIVHRDMENLDLMVIDA-MIEMGMRPISVPISALRYDGRFDYTPLIRYIDAGFVPVS 130
Query: 539 ---VIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKIT 595
V ++ D A A +K ++ + T VDGIY+ DP + A++ + I
Sbjct: 131 YGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID 190
Query: 596 FDEVISK-----------KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT 644
+ + K E + K + + + + + + GT
Sbjct: 191 TNITFDRVQNDVTGGIGKKFE----SMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGT 246
Query: 645 LV 646
++
Sbjct: 247 VI 248
|
| >3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 13/187 (6%)
Query: 423 QLGEALMKGDAYNINSSIIKNIISEISEI-VSCGIELAIVIGGGNICRGISNKIQNIDRS 481
++ + L +A+ N ++ IS+ EL I + + I+N +
Sbjct: 50 KITDLLYLCNAHVKNGIPFDDVFKLISQRYTEIVSELNIDMDIAYYLEKVKKNIENG--A 107
Query: 482 TADYMGMLATIINSLALFDILNKSGI-ISHVMSAISIEKFLESYIPLNAIKYLEEGKVVI 540
++DY +N + L LN I + V+ F E + + +
Sbjct: 108 SSDYAASRGEYLNGVILAKYLNAEFIDAAEVIFFDKSGCFDEKKSYEKIKEKVLSCNKAV 167
Query: 541 FAGGIG-NPFFTTDT--------TAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIY 591
G G + T T ++ +A + A++ T V G +DP +
Sbjct: 168 IPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTI 227
Query: 592 KKITFDE 598
KI++ E
Sbjct: 228 SKISYKE 234
|
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 514 AISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFT----------TDTTAALRAAEI 563
+E + ++ + V I G +G + T +D TA +
Sbjct: 185 GDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKAL 244
Query: 564 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE 598
+ I VDG+ DP A +TFDE
Sbjct: 245 GLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDE 279
|
| >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 533 LEEGKVVIFAGGIG-NPFFTTDT--------TAALRAAEIKAEIILKATKVDGIYNSDPN 583
+VI G IG T T TAAL A + A + T V GIY +DP
Sbjct: 173 RLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPR 232
Query: 584 KCLSAIIYKKITFDE 598
+A +I F E
Sbjct: 233 VVSAAKRIDEIAFAE 247
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 837 | |||
| 3bbn_B | 231 | Ribosomal protein S2; small ribosomal subunit, spi | 100.0 | |
| 2vqe_B | 256 | 30S ribosomal protein S2; tRNA-binding, rRNA-bindi | 100.0 | |
| 3r8n_B | 218 | 30S ribosomal protein S2; protein biosynthesis, RN | 100.0 | |
| 1dd5_A | 185 | Ribosome recycling factor; three-helix bundle, bet | 100.0 | |
| 4gfq_A | 209 | Ribosome-recycling factor; structural genomics, ni | 100.0 | |
| 1ise_A | 185 | Ribosome recycling factor; translation; 2.20A {Esc | 100.0 | |
| 1is1_A | 185 | Ribosome recycling factor; translation; 2.20A {Vib | 100.0 | |
| 1wqg_A | 185 | Ribosome recycling factor; translation factor, tri | 100.0 | |
| 1eh1_A | 185 | Ribosome recycling factor; translation, hinge vari | 100.0 | |
| 1ge9_A | 184 | Ribosome recycling factor; three-helix bundle; NMR | 100.0 | |
| 3bch_A | 253 | 40S ribosomal protein SA; laminin receptor, P40 ri | 100.0 | |
| 1vi6_A | 208 | 30S ribosomal protein S2P; structural genomics, ri | 100.0 | |
| 2xzm_B | 241 | RPS0E; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3j20_B | 202 | 30S ribosomal protein S2P; archaea, archaeal, KINK | 100.0 | |
| 3u5c_A | 252 | 40S ribosomal protein S0-A; translation, ribosome, | 100.0 | |
| 2zkq_b | 295 | 40S ribosomal protein SA; protein-RNA complex, 40S | 100.0 | |
| 3iz6_A | 305 | 40S ribosomal protein SA (S2P); eukaryotic ribosom | 100.0 | |
| 1xb2_B | 291 | EF-TS, elongation factor TS, mitochondrial, EF-TSM | 100.0 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 100.0 | |
| 1aip_C | 196 | EF-TS, elongation factor TS; nucleotide exchange, | 100.0 | |
| 3ek6_A | 243 | Uridylate kinase; UMPK unique GTP B site, alloster | 100.0 | |
| 4a7w_A | 240 | Uridylate kinase; transferase; HET: GTP; 1.80A {He | 100.0 | |
| 3nwy_A | 281 | Uridylate kinase; allosterically activated form, A | 100.0 | |
| 1ybd_A | 239 | Uridylate kinase; alpha/beta/alpha fold, hexamer, | 100.0 | |
| 2jjx_A | 255 | Uridylate kinase, UMP kinase; structural genomics, | 100.0 | |
| 2a1f_A | 247 | Uridylate kinase; PYRH, structural genomics, PSI, | 100.0 | |
| 1z9d_A | 252 | Uridylate kinase, UK, UMP kinase; structural genom | 100.0 | |
| 2va1_A | 256 | Uridylate kinase; UMPK, transferase, pyrimidine bi | 100.0 | |
| 2j4j_A | 226 | Uridylate kinase; transferase, nucleoside monophos | 99.97 | |
| 2brx_A | 244 | Uridylate kinase; UMP kinase, amino acid kinase, p | 99.97 | |
| 2ij9_A | 219 | Uridylate kinase; structural genomics, protein str | 99.96 | |
| 3ll9_A | 269 | Isopentenyl phosphate kinase; mevalonate biosynthe | 99.96 | |
| 2j5v_A | 367 | Glutamate 5-kinase; proline biosynthesis, gamma gl | 99.96 | |
| 3ll5_A | 249 | Gamma-glutamyl kinase related protein; alternate m | 99.95 | |
| 2rd5_A | 298 | Acetylglutamate kinase-like protein; protein-prote | 99.95 | |
| 1wih_A | 84 | Mitochondrial ribosome recycling factor; structura | 99.95 | |
| 2ako_A | 251 | Glutamate 5-kinase; structural genomics, PSI, prot | 99.95 | |
| 2ap9_A | 299 | NAG kinase, acetylglutamate kinase, AGK; structura | 99.95 | |
| 2v5h_A | 321 | Acetylglutamate kinase; amino-acid biosynthesis, t | 99.95 | |
| 2ogx_A | 276 | Molybdenum storage protein subunit alpha; open alp | 99.94 | |
| 3lf9_A | 121 | 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immu | 99.94 | |
| 3d40_A | 286 | FOMA protein; fosfomycin, antibiotic resistance, k | 99.94 | |
| 2ogx_B | 270 | Molybdenum storage protein subunit beta; open alph | 99.94 | |
| 2bty_A | 282 | Acetylglutamate kinase; N-acetyl-L-glutamate kinas | 99.94 | |
| 3k4o_A | 266 | Isopentenyl phosphate kinase; small molecule kinas | 99.93 | |
| 2egx_A | 269 | Putative acetylglutamate kinase; struc genomics, N | 99.93 | |
| 2e9y_A | 316 | Carbamate kinase; transferase, structural genomics | 99.93 | |
| 2we5_A | 310 | Carbamate kinase 1; arginine catabolism, arginine | 99.93 | |
| 3ab4_A | 421 | Aspartokinase; aspartate kinase, concerted inhibit | 99.93 | |
| 2buf_A | 300 | Acetylglutamate kinase; acetyglutamate kinase, ADP | 99.93 | |
| 3lhp_S | 123 | 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immun | 99.93 | |
| 1e19_A | 314 | Carbamate kinase-like carbamoylphosphate synthetas | 99.92 | |
| 3l76_A | 600 | Aspartokinase; allostery, ACT domains, kinase tran | 99.92 | |
| 1tfe_A | 145 | Elongation factor TS; 1.70A {Thermus thermophilus} | 99.91 | |
| 3kzf_A | 317 | Carbamate kinase; arginine dihydrolase pathway, gi | 99.9 | |
| 1gs5_A | 258 | Acetylglutamate kinase; carbamate kinase, amino ac | 99.9 | |
| 3d2m_A | 456 | Putative acetylglutamate synthase; protein-COA-Glu | 99.89 | |
| 4axs_A | 332 | Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm | 99.89 | |
| 3l86_A | 279 | Acetylglutamate kinase; ARGB, amino-acid biosynthe | 99.89 | |
| 3zzh_A | 307 | Acetylglutamate kinase; transferase, arginine bios | 99.89 | |
| 3c1m_A | 473 | Probable aspartokinase; allosteric inhibition, thr | 99.87 | |
| 2cdq_A | 510 | Aspartokinase; aspartate kinase, amino acid metabo | 99.87 | |
| 4ab7_A | 464 | Protein Arg5,6, mitochondrial; transferase, argini | 99.86 | |
| 3s6g_A | 460 | N-acetylglutamate kinase / N-acetylglutamate SYNT; | 99.85 | |
| 2j0w_A | 449 | Lysine-sensitive aspartokinase 3; feedback inhibit | 99.85 | |
| 3tvi_A | 446 | Aspartokinase; structural genomics, ACT domains, r | 99.84 | |
| 3s6k_A | 467 | Acetylglutamate kinase; synthase, transferase; 2.8 | 99.82 | |
| 2cp9_A | 64 | EF-TS, EF-TSMT, elongation factor TS, mitochondria | 99.5 | |
| 1xb2_B | 291 | EF-TS, elongation factor TS, mitochondrial, EF-TSM | 99.36 | |
| 1tfe_A | 145 | Elongation factor TS; 1.70A {Thermus thermophilus} | 99.29 | |
| 1aip_C | 196 | EF-TS, elongation factor TS; nucleotide exchange, | 99.18 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 98.89 | |
| 1nri_A | 306 | Hypothetical protein HI0754; structural genomics, | 96.21 | |
| 1z96_A | 40 | DNA-damage, UBA-domain protein MUD1; ubiquitin, th | 95.75 | |
| 1wj7_A | 104 | Hypothetical protein (RSGI RUH-015); UBA domain, u | 95.35 | |
| 2g3q_A | 43 | Protein YBL047C; endocytosis, solution structure, | 94.94 | |
| 1wgn_A | 63 | UBAP1, ubiquitin associated protein; ubiquitin ass | 94.26 | |
| 2bwb_A | 46 | Ubiquitin-like protein DSK2; UBA, signaling protei | 93.69 | |
| 1ify_A | 49 | HHR23A, UV excision repair protein RAD23 homolog A | 93.54 | |
| 2knz_A | 53 | Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc | 93.51 | |
| 2dna_A | 67 | Unnamed protein product; ubiquitin associated doma | 93.37 | |
| 2jy5_A | 52 | Ubiquilin-1; UBA, alternative splicing, cytoplasm, | 93.19 | |
| 1wji_A | 63 | Tudor domain containing protein 3; UBA domain, str | 93.0 | |
| 1wr1_B | 58 | Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu | 92.93 | |
| 2dah_A | 54 | Ubiquilin-3; UBA domain, structural genomics, NPPS | 92.78 | |
| 2dak_A | 63 | Ubiquitin carboxyl-terminal hydrolase 5; isopeptid | 92.63 | |
| 2cpw_A | 64 | CBL-interacting protein STS-1 variant; ubiquitin a | 91.91 | |
| 4ae4_A | 118 | Ubiquitin-associated protein 1; protein transport, | 91.76 | |
| 2crn_A | 64 | Ubash3A protein; compact three-helix bundle, struc | 91.64 | |
| 1whc_A | 64 | RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain | 91.24 | |
| 1vg5_A | 73 | RSGI RUH-014, rhomboid family protein; UBA domain, | 91.23 | |
| 1vej_A | 74 | Riken cDNA 4931431F19; UBA domain, three helix bun | 91.16 | |
| 2yva_A | 196 | DNAA initiator-associating protein DIAA; intermole | 91.05 | |
| 2dai_A | 83 | Ubadc1, ubiquitin associated domain containing 1; | 90.69 | |
| 2dag_A | 74 | Ubiquitin carboxyl-terminal hydrolase 5; isopeptid | 90.69 | |
| 1wiv_A | 73 | UBP14, ubiquitin-specific protease 14; ubiquitin a | 90.47 | |
| 1tr8_A | 102 | Conserved protein (MTH177); chaperones, nascent po | 90.34 | |
| 1veg_A | 83 | NEDD8 ultimate buster-1; ubiquitin associated doma | 89.21 | |
| 2ekk_A | 47 | UBA domain from E3 ubiquitin-protein ligase HUWE1; | 88.93 | |
| 2dkl_A | 85 | Trinucleotide repeat containing 6C protein; TNRC6C | 88.83 | |
| 2cwb_A | 108 | Chimera of immunoglobulin G binding protein G and | 87.92 | |
| 2d9s_A | 53 | CBL E3 ubiquitin protein ligase; UBA domain, dimer | 87.48 | |
| 2ooa_A | 52 | E3 ubiquitin-protein ligase CBL-B; alpha-helical d | 86.92 | |
| 1vek_A | 84 | UBP14, ubiquitin-specific protease 14, putative; U | 86.47 | |
| 1dv0_A | 47 | DNA repair protein HHR23A; helical bundle, DNA bin | 85.4 | |
| 4ae4_A | 118 | Ubiquitin-associated protein 1; protein transport, | 85.1 | |
| 2lbc_A | 126 | Ubiquitin carboxyl-terminal hydrolase 13; tandem U | 83.39 | |
| 1x92_A | 199 | APC5045, phosphoheptose isomerase; midwest centre | 82.45 | |
| 2lbc_A | 126 | Ubiquitin carboxyl-terminal hydrolase 13; tandem U | 82.17 | |
| 2oo9_A | 46 | E3 ubiquitin-protein ligase CBL; alpha-helical dom | 81.99 | |
| 3e21_A | 45 | HFAF1, FAS-associated factor 1; UBA, alternative s | 81.54 | |
| 1m3s_A | 186 | Hypothetical protein YCKF; structural genomics, PS | 81.53 | |
| 3sho_A | 187 | Transcriptional regulator, RPIR family; structural | 80.91 | |
| 2i2w_A | 212 | Phosphoheptose isomerase; lipopolysaccharide biosy | 80.38 |
| >3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-69 Score=549.38 Aligned_cols=218 Identities=38% Similarity=0.652 Sum_probs=215.6
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||+||+||||++++|||+|+|||||+|||+|||||++|+.+|++||++|.++++++|+||||||+++++++|+++|++||
T Consensus 9 lL~agvH~Gh~t~~wnpkM~~yIy~~RngihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~g 88 (231)
T 3bbn_B 9 MMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRAR 88 (231)
T ss_dssp HHHTSSSSCCCSSCCCGGGGGGEEEEETTEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHHHHHHHT
T ss_pred HHHhCeEecCCcCcCCcccccceecccCCcEEeeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||.|+++++++|++++.+...+.|+.++|||.+.+.|+++||+++|+|+++|+++||+|||+||..
T Consensus 89 ~~yv~~rWlgG~LTN~~ti~~~i~~~~~l~~~~~~g~~~~l~Kke~~~~~r~~~kl~k~lgGik~m~~~Pdll~v~Dp~~ 168 (231)
T 3bbn_B 89 CHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQE 168 (231)
T ss_dssp CEECCSSCCSCSSSCHHHHHHHHHHHHHHHHSTTSTTTTTSCHHHHHHHHHHHHHHTTSTTSTTSCCSCCSEEEESCTTT
T ss_pred CccccccccCCCCcCHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHhhhcccccccCCCEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
|++||+||.++||||||+|||||||++|||||||||||.+|+.|++++|++||++|+.
T Consensus 169 e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~IP~Ndds~~si~li~~~la~ai~~g~~ 226 (231)
T 3bbn_B 169 EYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRS 226 (231)
T ss_dssp THHHHHHHHTTTCCEEECCCSSSCCSSCSEECCCCSSSHHHHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHhCCCEEEEecCCCCccceeEEeeCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999975
|
| >2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-69 Score=554.94 Aligned_cols=218 Identities=45% Similarity=0.813 Sum_probs=215.9
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||+||+||||++++|||+|+|||||+|||+|||||++|+.+|++||++|..++.++|+||||||+++++.+|+++|++||
T Consensus 10 LL~AgvH~Gh~t~~wnpkM~~YIyg~RngihIIdL~kT~~~L~~A~~~i~~~a~~gg~iLfVgTk~~a~~~V~~~A~~~g 89 (256)
T 2vqe_B 10 LLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAG 89 (256)
T ss_dssp TTCSSTTCCCBSSSCCGGGSTTEEEEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTTTTTTTTSSS
T ss_pred HHHcCeeeccCcCCCCCccccceecccCCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||+|++++|++|++++.+...|.|+.|+|||.+.+.|+++||+++|+|+++|+++||+|||+||..
T Consensus 90 ~~yv~~RWlgG~LTN~~ti~~~i~~l~~le~~~~~g~f~~l~Kke~~~~~r~~~kL~k~lgGik~m~~~Pdll~V~Dp~~ 169 (256)
T 2vqe_B 90 MPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTK 169 (256)
T ss_dssp CCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTGGGCSSCCSEEEESCTTT
T ss_pred CeeecCeeCCCcccCHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHHhhcCccccccCCCEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
|++||+||.++||||||||||||||++|||||||||||.+|+.|++|+|++||++|+.
T Consensus 170 e~~Ai~EA~~l~IPvIaivDTn~dp~~VdypIP~NDds~~sI~Li~~~la~ai~~g~~ 227 (256)
T 2vqe_B 170 EAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARG 227 (256)
T ss_dssp THHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSCHHHHHHHHHHHHHHHHTTTS
T ss_pred chHHHHHHHHcCCCEEEEecCCCCchhcceEeecCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999985
|
| >1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-56 Score=436.71 Aligned_cols=184 Identities=37% Similarity=0.600 Sum_probs=181.1
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|++|
T Consensus 2 ~~~~~~~~~~~M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekA 81 (185)
T 1dd5_A 2 VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKA 81 (185)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCcccHHHceeeecCCCCEEEEEecCHhHHHHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++|||||||++||+.|||+||+||+|||++|+|.||+.+|++|++|||+||++++++|+++|++++|||+.++++++||
T Consensus 82 I~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQ 161 (185)
T 1dd5_A 82 INASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQ 161 (185)
T ss_dssp HHHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|+++||+++++||||||+|
T Consensus 162 kltd~~i~~id~~~~~KEkEim~v 185 (185)
T 1dd5_A 162 KLTDEFIEKLDEVFEIKKEEIMEF 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
|
| >4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-56 Score=442.45 Aligned_cols=186 Identities=39% Similarity=0.607 Sum_probs=183.3
Q ss_pred hhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHH
Q psy13351 652 MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIK 731 (837)
Q Consensus 652 ~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ 731 (837)
..+++++++++++|++++++|+.+|+++|||||||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|+
T Consensus 24 ~m~~~il~~a~ekM~kaie~lk~el~~iRtGRA~p~lLd~I~VdyYG~~tPL~qvA~Isvpe~rtl~I~p~D~s~i~~Ie 103 (209)
T 4gfq_A 24 AMGQQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIE 103 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCCSBSCCGGGGTTCEEESSSCEEEGGGGEEEEEEETTEEEEEESSGGGHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHhCCeEEeeCCCccchhhhheeecCCCCEEEEecCcHhhHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHH
Q psy13351 732 KAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYD 811 (837)
Q Consensus 732 kaI~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~ 811 (837)
+||++||||+||++||+.||||||+||+|||++|+|.||+.+|+||++||||||++++.+|+++|++++|||+.++++++
T Consensus 104 kAI~~S~LglnP~~dG~~Iri~iP~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~e 183 (209)
T 4gfq_A 104 KAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTED 183 (209)
T ss_dssp HHHHHHTSSCCCEECSSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCcCCCceeeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 812 IQKLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 812 iq~l~~~~~~~id~~~~~kekei~~~ 837 (837)
||++||+|+++||+++++||||||+|
T Consensus 184 iQklTd~~i~~iD~~l~~KEkEim~V 209 (209)
T 4gfq_A 184 IQKETDKYIAKVDEIAKNKEKEIMEV 209 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999987
|
| >1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-56 Score=436.49 Aligned_cols=184 Identities=40% Similarity=0.663 Sum_probs=181.2
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|++|
T Consensus 2 ~~~~~~~~~~~M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekA 81 (185)
T 1ise_A 2 ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKA 81 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEeccCHhHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++||||+||++||+.|||+||+||+|||++|+|.||+.+|++|++|||+||++++++|+++|++++|||+.++++++||
T Consensus 82 I~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQ 161 (185)
T 1ise_A 82 IMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQ 161 (185)
T ss_dssp HHTTCTTCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|+++||+++++||||||+|
T Consensus 162 kltd~~i~~id~~~~~KEkEim~v 185 (185)
T 1ise_A 162 KLTDAAIKKIEAALADKEAELMQF 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
|
| >1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-56 Score=436.15 Aligned_cols=184 Identities=43% Similarity=0.696 Sum_probs=181.4
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|++|
T Consensus 2 ~~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekA 81 (185)
T 1is1_A 2 INEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKA 81 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEEecCHhHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++|||||||++||+.|||+||+||+|||++|+|.||+.+|++|++|||+||++++++|+++|++++|||+.++++++||
T Consensus 82 I~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQ 161 (185)
T 1is1_A 82 IMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQ 161 (185)
T ss_dssp HHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|+++||+++++||||||+|
T Consensus 162 kltd~~i~~id~~~~~KEkEim~v 185 (185)
T 1is1_A 162 KLTDVAVKKIDEVLAAKEKELMEV 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
|
| >1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-56 Score=436.15 Aligned_cols=184 Identities=35% Similarity=0.583 Sum_probs=181.2
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|++|
T Consensus 2 ~~~~~~~~~~~M~kai~~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekA 81 (185)
T 1wqg_A 2 IDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETA 81 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEEeCCHhHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++||||+||++||+.|||+||+||+|||++|+|.||+.+|++|++|||+||++++++|+++|++++|||+.++++++||
T Consensus 82 I~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQ 161 (185)
T 1wqg_A 82 IRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLD 161 (185)
T ss_dssp HHHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|+++||+++++||||||+|
T Consensus 162 kltd~~i~~id~~~~~KEkEim~v 185 (185)
T 1wqg_A 162 KTTHQYVTQIDELVKHKEGELLEV 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
|
| >1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-56 Score=435.94 Aligned_cols=184 Identities=39% Similarity=0.649 Sum_probs=181.2
Q ss_pred hhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHH
Q psy13351 653 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKK 732 (837)
Q Consensus 653 v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~k 732 (837)
.+++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|++
T Consensus 2 ~~~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~Iek 81 (185)
T 1eh1_A 2 TLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEK 81 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEecCCHhHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHH
Q psy13351 733 AINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDI 812 (837)
Q Consensus 733 aI~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~i 812 (837)
||++|||||||++||+.|||+||+||+|||++|+|.||+.+|++|++|||+||++++++|+++|++++|||+.++++++|
T Consensus 82 AI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~i 161 (185)
T 1eh1_A 82 AIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEI 161 (185)
T ss_dssp HHSSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q psy13351 813 QKLTDKFILEINQLLINKEKEILT 836 (837)
Q Consensus 813 q~l~~~~~~~id~~~~~kekei~~ 836 (837)
|++||+|+++||+++++||||||+
T Consensus 162 Qkltd~~i~~id~~~~~KEkEim~ 185 (185)
T 1eh1_A 162 QKITDEFIAKADQLAEKKEQEILG 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999996
|
| >1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-54 Score=422.46 Aligned_cols=180 Identities=39% Similarity=0.653 Sum_probs=176.7
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++++++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|++|
T Consensus 5 ~~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~tpL~qvA~Isv~~~r~l~I~p~D~~~i~~IekA 84 (184)
T 1ge9_A 5 LEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKA 84 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecCHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++ |||+||++||+.|||+||+||+|||++|+|.||+.+|++|++|||+||++++++|+++ + +|||+.++++++||
T Consensus 85 I~~-dLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~--k-iseD~~k~~e~~iQ 160 (184)
T 1ge9_A 85 IRE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE--G-ISEDEKKRALERLQ 160 (184)
T ss_dssp HHH-HHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST--T-CCHHHHHHHHHHHH
T ss_pred HHh-CCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CChhHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999986 5 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|++++|+++++||||||+|
T Consensus 161 kltd~~i~~id~~~~~KEkEim~v 184 (184)
T 1ge9_A 161 KLTDKYIDEINKLMEAKEKEIMSV 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
|
| >3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-54 Score=439.96 Aligned_cols=170 Identities=23% Similarity=0.309 Sum_probs=162.3
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+ +|||+|+|||||+| ||+|||||++|+.+|++|+++|. .+.++|+|||||||++++.+|+++|++|
T Consensus 51 LL~AgvH~Gh~--~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~-~~~~~~~iLfVgTk~~aq~~V~~~A~~~ 127 (253)
T 3bch_A 51 FLAAGTHLGGT--NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIV-AIENPADVSVISSRNTGQRAVLKFAAAT 127 (253)
T ss_dssp HHHHTTTBCCS--CCCGGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHH-TCSSGGGEEEEECSHHHHHHHHHHHHHH
T ss_pred HHHcCEEecCC--cCCccccccEEeecCCCcEEEeHHHHHHHHHHHHHHHH-HHhCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 68999999995 89999999999999 99999999999999999999999 6789999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++||++||+||+||||.+. .| ++||+|||+||.
T Consensus 128 g~~yv~~RWlgG~LTN~~~~-----------------~f-----------------------------~~PdlliV~Dp~ 161 (253)
T 3bch_A 128 GATPIAGRFTPGTFTNQIQA-----------------AF-----------------------------REPRLLVVTDPR 161 (253)
T ss_dssp CCEEEESCCCTTTTTCCSCS-----------------TT-----------------------------CSCSEEEESCTT
T ss_pred CCeeecceecCCcccCcccc-----------------cc-----------------------------CCCCEEEEECCC
Confidence 99999999999999999852 11 589999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++||+||.++||||||||||||||++|||||||||||.+||.|++|+|++||++|+..
T Consensus 162 ~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~IP~Ndds~~SI~Li~~lla~aIl~grg~ 221 (253)
T 3bch_A 162 ADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGT 221 (253)
T ss_dssp TTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccchHHHHHHHhCCCEEEEEcCCCCcccCceEeecCCcchhhHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999999863
|
| >1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-54 Score=430.01 Aligned_cols=169 Identities=25% Similarity=0.414 Sum_probs=160.9
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+++ ||+|+|||||+| ||+|||||++|+.+|++|+++|..+ ++|+|||||||++++++|+++|++|
T Consensus 16 lL~AgvH~Gh~~~--npkM~~YIy~~R~~gihIIdL~kT~~~L~~A~~~i~~i--~~~~iLfVgTk~~~~~~V~~~A~~~ 91 (208)
T 1vi6_A 16 YLAAGVHIGTQIK--TGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY--EPSKILLVAARQYAHKPVQMFSKVV 91 (208)
T ss_dssp HHHHTTTBCCSCC--CTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS--CGGGEEEEECSGGGHHHHHHHHHHH
T ss_pred HHhcCeEEcCCcC--CCCccceEEeeeCCCcEEEcHHHHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 6899999999965 999999999999 9999999999999999999999999 8999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++|+++||+||+||||+. ..| ++||++||+||.
T Consensus 92 g~~~v~~rwlgG~LTN~~~-----------------~~f-----------------------------~~PdlliV~Dp~ 125 (208)
T 1vi6_A 92 GSDYIVGRFIPGTLTNPML-----------------SEY-----------------------------REPEVVFVNDPA 125 (208)
T ss_dssp CCEEEESSCCTTTTTCTTS-----------------TTC-----------------------------CCCSEEEESCTT
T ss_pred CCeeecCEECCCcccChhh-----------------Hhh-----------------------------CCCCEEEEECCC
Confidence 9999999999999999972 001 489999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++||+||.++||||||+|||||||++|||||||||||.+|+.|++|+|++||++|+..
T Consensus 126 ~e~~ai~EA~~l~IPvIalvDTn~~p~~Vd~~IP~Ndds~~SI~Li~~~la~ail~grg~ 185 (208)
T 1vi6_A 126 IDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQ 185 (208)
T ss_dssp TTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHhCCCEEEEeCCCCCccccCEEEeCCCCchhHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999853
|
| >2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-53 Score=433.48 Aligned_cols=170 Identities=25% Similarity=0.278 Sum_probs=162.0
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+ +|||+|+|||||+| ||+|||||++|+.+|++|+++|.. +.++|+|||||||++++.+|+++|++|
T Consensus 13 lL~AgvH~G~~--~wnpkM~~YIy~~R~nGihIIdL~kT~~~L~~A~~~i~~-i~~~~~iLfVgtk~~~~~~V~~~A~~~ 89 (241)
T 2xzm_B 13 LLASNCHQATI--NLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAA-VQHPEDVMVVCSRIYGQRAAIKFAGYT 89 (241)
T ss_dssp HHHTTTTEECS--CCCGGGTTTEEEECSSSCEEECHHHHHHHHHHHHHHHHH-CSSGGGEEEECCSHHHHHHHHHHHHHH
T ss_pred HHhcCeEeccC--cCCCCCcccEeeeeCCCcEEEeHHHHHHHHHHHHHHHHH-HhCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 68999999984 89999999999999 999999999999999999999999 588999999999999999999999999
Q ss_pred CCCcc-cCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecC
Q psy13351 80 GMPFI-DQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDV 158 (837)
Q Consensus 80 ~~~~v-~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~ 158 (837)
|++|+ ++||+||+||||++ +.| ++||+|||+||
T Consensus 90 g~~yv~~~RWlgG~LTN~~t-----------------~~~-----------------------------~~PdlliV~Dp 123 (241)
T 2xzm_B 90 HCKSTSSSRWTPGTLTNYQT-----------------LKY-----------------------------EEPRVLIVTDP 123 (241)
T ss_dssp TCBCCCCSSCCTTTTTCTTC-----------------TTC-----------------------------CCCSEEEESCT
T ss_pred CCEEeccccccCCcccCccc-----------------ccc-----------------------------CCCCEEEEECC
Confidence 99999 99999999999985 111 58999999999
Q ss_pred CCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 159 GYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 159 ~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
..|++||+||.++||||||||||||||++|||||||||||.+|+.|++++|++||++|+..
T Consensus 124 ~~e~~ai~EA~~l~IPvIalvDTn~~p~~VDy~IP~Ndds~~SI~Li~~~la~ail~~rg~ 184 (241)
T 2xzm_B 124 RSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNNRSTESISMIYWMIAREVKILRGE 184 (241)
T ss_dssp TTTHHHHHHHTTTTCCEEECCCSSSCCTTCCEECCSCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CcchHHHHHHHHhCCCEEEEecCCCCcccccEEEeCCCcccchHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999999999999999999999999863
|
| >3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-53 Score=421.22 Aligned_cols=169 Identities=24% Similarity=0.370 Sum_probs=160.5
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||++ |||+|+|||||+| ||+|||||++|+.+|++|+++|..+ ++|+|||||||++++.+|.++|+++
T Consensus 12 lL~AgvH~Gh~~--~np~M~~YIy~~r~~Gi~IIdL~kT~~~L~~A~~~i~~~--~~~~ilfV~tk~~~~~~V~k~A~~~ 87 (202)
T 3j20_B 12 YLAAGVHIGTQQ--KTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKF--EPQSILAVSVRLYGQKPVKKFGEVT 87 (202)
T ss_dssp HHHHTCSBCCSC--CCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHS--CSSCEEEECCCTTTHHHHHHHHHHH
T ss_pred HHhcCccccCCc--CCCCccccEeeeeCCCCEEECHHHHHHHHHHHHHHHHhh--CCCeEEEEecChHHHHHHHHHHHHH
Confidence 589999999995 6999999999999 8999999999999999999999987 7899999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++|+++||+||+||||.. ..| ++||++||+||.
T Consensus 88 g~~~v~~rw~gG~lTN~~~-----------------~~~-----------------------------~~Pdllvv~Dp~ 121 (202)
T 3j20_B 88 GARAIPGRFLPGTMTNPAV-----------------KNF-----------------------------FEPDVLIVTDPR 121 (202)
T ss_dssp SCCCCCSSCCSSSSSCSSS-----------------SSC-----------------------------CCCSEEEESCTT
T ss_pred CCceeCceecCCCcccHhH-----------------Hhc-----------------------------cCCCeEEEeCCc
Confidence 9999999999999999962 001 499999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++|++||+++||||||+|||||||++|||||||||||.+|+.|++|+|+++|++|+..
T Consensus 122 ~d~~ai~EA~~l~IP~Ial~DTn~~p~~Vd~~IP~Ndds~~Si~Li~~~la~avl~~rg~ 181 (202)
T 3j20_B 122 ADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGE 181 (202)
T ss_dssp TSHHHHHHHHHHTCCEEEEECTTCCCTTCCEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHcCCCEEEEEcCCCCccccCEEEeCCCCcHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999863
|
| >3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-53 Score=431.35 Aligned_cols=170 Identities=24% Similarity=0.347 Sum_probs=162.2
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+ +|||+|+|||||+| ||+|||||.+|+.+|++|+++|..+ .++++|||||||++++.+|.++|+++
T Consensus 17 lL~AGvH~G~~--~wnpkM~~YIy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i-~~~~~vlfVgTk~~~q~~V~k~A~~~ 93 (252)
T 3u5c_A 17 LLAANTHLGAR--NVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAI-PNPEDVVAISSRTFGQRAVLKFAAHT 93 (252)
T ss_dssp HHHHTTTEECS--SCCCTTCCCEEEEETTTEEEECHHHHHHHHHHHHHHHTTS-SSGGGEEEEECSHHHHHHHHHHHHHS
T ss_pred HHHCCeeccCC--cCCcCchhheecccCCCcEEecHHHHHHHHHHHHHHHHHH-hcCCEEEEEeCCcHHHHHHHHHHHHh
Confidence 68999999976 89999999999999 8999999999999999999999987 68999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++||++||+||+||||++. .| ++||+|||+||.
T Consensus 94 g~~~v~~rwlgGtLTN~~t~-----------------~f-----------------------------~~PdllvV~Dp~ 127 (252)
T 3u5c_A 94 GATPIAGRFTPGSFTNYITR-----------------SF-----------------------------KEPRLVIVTDPR 127 (252)
T ss_dssp SCEEEESCCCTTSSSCTTST-----------------TC-----------------------------CCCSEEEESCTT
T ss_pred CCceecCcccCCcccChhhh-----------------hc-----------------------------cCCceEEEeCCc
Confidence 99999999999999999851 11 599999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++||+||+++||||||||||||||++|||||||||||.+|+.|++|+|+++|+++++.
T Consensus 128 ~d~~ai~EA~~l~IP~Ial~DTn~~p~~VD~~IP~Ndds~~SI~Li~~~La~aVl~~rg~ 187 (252)
T 3u5c_A 128 SDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGA 187 (252)
T ss_dssp TTHHHHHHHHTTTCCEEEEECTTCCCTTCSSEEECCTTSTTHHHHHHHHHHHHHHSSSSS
T ss_pred cchHHHHHHHHcCCCEEEEEcCCCCcccCCEEEeCCCCCcchHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999864
|
| >2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-53 Score=440.25 Aligned_cols=170 Identities=23% Similarity=0.309 Sum_probs=161.4
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||++|+||||+ +|||+|+|||||+| ||+|||||.+|+.+|++|+++|. .+.++++|||||||++++.+|+++|++|
T Consensus 18 LL~AgvH~Gh~--~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~-~i~~~~~ILfVgTk~~aq~~V~k~A~~~ 94 (295)
T 2zkq_b 18 FLAAGTHLGGT--NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIV-AIENPADVSVISSRNTGQRAVLKFAAAT 94 (295)
T ss_dssp HHHHTTTBCCS--CCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHH-HSSCGGGEEEEECSHHHHHHHHHHHHHH
T ss_pred HHhcCEEecCC--cCCccccceEEeecCCCCEEEeHHHHHHHHHHHHHHHH-HHhCCCeEEEEeCcHHHHHHHHHHHHHh
Confidence 68999999995 89999999999999 99999999999999999999999 6689999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++||++||+||+||||++. .| ++||+|||+||.
T Consensus 95 g~~yv~~RWlgG~LTN~~t~-----------------~f-----------------------------~~PdlliV~Dp~ 128 (295)
T 2zkq_b 95 GATPIAGRFTPGTFTNQIQA-----------------AF-----------------------------REPRLLVVTDPR 128 (295)
T ss_dssp CCEEEESSCCCC-CCCTTCS-----------------SC-----------------------------CCCSEEEESCTT
T ss_pred CCceecceEecccccCcccc-----------------cc-----------------------------cCCCeEEEeCCC
Confidence 99999999999999999852 11 589999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++||+||+++||||||||||||||++|||||||||||.+||.|++++|+++|++|+..
T Consensus 129 ~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~IP~Ndds~~SI~Li~~lla~aIl~~rg~ 188 (295)
T 2zkq_b 129 ADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGT 188 (295)
T ss_dssp TTHHHHHHHHHHTCCEEEEECTTCCCTTCSEEEESCSSCHHHHHHHHHHHHHHHHHCCSS
T ss_pred cchhHHHHHHHhCCCEEEEecCCCCcccCCEEEeCCCCccchHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999999863
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-52 Score=428.50 Aligned_cols=170 Identities=25% Similarity=0.297 Sum_probs=162.3
Q ss_pred CceeceeeccccCCCCCCCcCcccceeC-CeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRN-KIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~-g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||++|+||||+ +|||+|++||||+|+ |+|||||++|+.+|++|+++|..+ .++++|||||||++++.+|.++|++|
T Consensus 22 LLaAGvH~Gt~--~wNpkM~pYIyg~RndGIhIIdL~kT~e~L~~Aa~~I~~i-~~~~~ILfVgTk~~aq~aV~k~A~~t 98 (305)
T 3iz6_A 22 MLAADVHLGTK--NCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAI-ENPQDIIVQSARPYGQRAVLKFAQYT 98 (305)
T ss_dssp HHHHHHSSCBS--CCCTTTTTSCCEEETTTEEECCHHHHHHHHHHHHHHHHHT-TSSCCEEEECCSHHHHHHHHHHHHHH
T ss_pred HHHcCeeccCC--cCCcCccccEEeeecCCceEECHHHHHHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHHh
Confidence 68999999976 899999999999996 999999999999999999999997 78999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++||++||+|||||||++. .| ++||+|||+||+
T Consensus 99 G~~yV~~RWlgGtLTN~~t~-----------------~f-----------------------------~ePdllvV~Dp~ 132 (305)
T 3iz6_A 99 GAHAIAGRHTPGTFTNQLQT-----------------SF-----------------------------SEPRLLILTDPR 132 (305)
T ss_dssp TCEEECSCCCTTTTTTTTTS-----------------CS-----------------------------SCCSEEEESCTT
T ss_pred CCccccCcccCCcccCcccc-----------------cc-----------------------------cCCceeEEeCcc
Confidence 99999999999999999862 11 599999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++||+||+++||||||||||||||++|||||||||||.+||.|++++|+++|++++..
T Consensus 133 ~d~qAI~EA~~lnIPtIALvDTnsdp~~VDy~IP~NDds~rSI~Li~~lLA~aVl~~rgt 192 (305)
T 3iz6_A 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192 (305)
T ss_dssp TTHHHHHHHHHHTCCEEEEECTTSCGGGCSEEEESCCSSTHHHHHHHHHHHHHHHHTTSS
T ss_pred cchHHHHHHHHcCCCEEEEEcCCCCccccceEEeCCCCCccHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999863
|
| >1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=428.14 Aligned_cols=190 Identities=27% Similarity=0.387 Sum_probs=177.0
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH----HhhhhhhhhcccccCCCeeEEEEeCCEEEEEEEecCC
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI----KLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCET 290 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~----~g~~~a~kk~~r~~~eG~i~~y~~~~~g~iveln~et 290 (837)
...+||+||++||+|||||||||.|+|||+|+|++|||+ +|+++|+||++|.|+||+|++|++++.||||||||||
T Consensus 4 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a~kkG~akAaKka~R~aaEGlV~~~~~~~~gvlvEvNcET 83 (291)
T 1xb2_B 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEGDTTVLVEVNCET 83 (291)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEETTEEEEEEEEESC
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHhccccccceEEEEEEcCCEEEEEEEeccc
Confidence 356799999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred chhccchHHHHHHHHHHHHHHhcCCC-------------ChhhhhcccccCCCcc--HHHHHHHHHHhhCCceEEEEEEE
Q psy13351 291 DFVAKNNEFIKFSKKIAKLITENTPI-------------NLDQLNNLKIKNNLLT--VDEKCKELISRIGENIKIRRFKL 355 (837)
Q Consensus 291 dfva~n~~f~~la~~ia~~iaa~~p~-------------~~~~l~q~~i~d~~~t--v~~~~~~~~~~~ge~i~l~rf~~ 355 (837)
||||||+.|++|+++||+++++.+|. +++++.+..+.+ +.| |+|.+.++++++||||+|+||.+
T Consensus 84 DFVArN~~F~~l~~~ia~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~-~~t~tv~d~i~~~ia~iGEni~lrR~~~ 162 (291)
T 1xb2_B 84 DFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELPAGP-EREGSLKDQLALAIGKLGENMILKRAAW 162 (291)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSBCCS-SSCSBHHHHHHHHHHHHCSCEEEEEEEE
T ss_pred ceeeCCHHHHHHHHHHHHHHHhcCCcccccccccccccCCHHHHhhccccc-CcchhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999998887 788887776643 346 99999999999999999999999
Q ss_pred EeeC--CeEEEEeeC------------CeEEEEEEecCCC-----hhHHHHHHhhhhccCccccCcCcC
Q psy13351 356 FKTN--NNLISYLHD------------NKIGVIVEYNGDN-----ESAVKDVAMHIAAMKPIALSSDQI 405 (837)
Q Consensus 356 ~~~g--~~i~~Y~H~------------~~~~~~v~~~~~~-----~~~~~~iamhi~a~~p~~l~~~~v 405 (837)
++.+ +.+++|+|+ |||||||.+++.+ ++++++||||||||+|.||++++|
T Consensus 163 ~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~~~~l~~~ak~iAmHIaA~~P~~l~~~~v 231 (291)
T 1xb2_B 163 VKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDD 231 (291)
T ss_dssp EECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSCGGGCHHHHHHHHHHHHHHCCSBCCCTTS
T ss_pred hcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCccchHHHHHHHHHHHHHhcCCcccCHHHh
Confidence 9854 579999995 5999999999876 789999999999999999999988
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=473.62 Aligned_cols=211 Identities=37% Similarity=0.558 Sum_probs=196.0
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEeCCEEEEEEEecCCchhc
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA 294 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~~~~g~iveln~etdfva 294 (837)
...+||+||++||++||||||||+|+|||+|+|++|||++|+++|+||++|.|+||+|++|+|++.||||||||||||||
T Consensus 5 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LRkkG~akAaKka~R~aaEGlv~~~i~~~~g~lvEvNcETDFVA 84 (1289)
T 3avx_A 5 TASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVA 84 (1289)
T ss_dssp CCSCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHHTTHHHHHHHHTTSCCCEEEEEEEECSSEEEEEEEEESCHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHhCcchhhHhcCccccCceEEEEEcCCEEEEEEEEcccccee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCCCChhhhhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeEEEEeeCCeEEEE
Q psy13351 295 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVI 374 (837)
Q Consensus 295 ~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i~~Y~H~~~~~~~ 374 (837)
||++|++|+++||.++++.+|.+++.+.+. |+|.+.+.++++||||+|+||.+++ ++.+++|+|++|||||
T Consensus 85 kn~~F~~l~~~ia~~~~~~~~~~~e~l~~~--------v~~~~~~~ia~iGEni~lrR~~~~~-~~~v~~Y~Hg~kigvl 155 (1289)
T 3avx_A 85 KDAGFQAFADKVLDAAVAGKITDVEVLKAQ--------FEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVL 155 (1289)
T ss_dssp TSHHHHHHHHHHHHHHHTTTCCCHHHHHHT--------TSTTTTTTTTTTCSCCEEEEEEEEE-CSEEEEEEETTTEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCHHHHHHH--------HHHHHHHHHhhhccceEEeEEEEEE-CCEEEEEecCCeEEEE
Confidence 999999999999999999999999988764 5677788999999999999999998 5789999998899999
Q ss_pred EEecCCChhHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhccCCCccccccc
Q psy13351 375 VEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSI 440 (837)
Q Consensus 375 v~~~~~~~~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~g~~~~i~~~~ 440 (837)
|++++.++++||+||||||||+|.||++++||++++++|++++..++.. +|+|..+.+++
T Consensus 156 V~~~~~~~~~ak~iAMhIaA~~P~~l~~~~vp~~~ve~E~~i~~~~a~~------~gKPe~i~eKi 215 (1289)
T 3avx_A 156 VAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQ------SGKPKEIAEKM 215 (1289)
T ss_dssp EEEESCCHHHHHHHHHHHHHHCCSBSSTTTSCTTHHHHHHHHHHHHHHH------HTCCHHHHHHH
T ss_pred EEecCCcHHHHHHHHHHHHhcCCeecchhhCCHHHHHHHHHHHHHHHHh------cCCcHHHHHHH
Confidence 9999988899999999999999999999999999999999998888643 36776655543
|
| >1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=362.47 Aligned_cols=145 Identities=37% Similarity=0.549 Sum_probs=138.8
Q ss_pred ccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEe--CCEEEEEEEecCCchh
Q psy13351 216 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDFV 293 (837)
Q Consensus 216 g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~--~~~g~iveln~etdfv 293 (837)
..+||+||++||+||||||+||.|+|||+|+|++|||++|+++|+||++|.|+||+|++|+| ++.|||||||||||||
T Consensus 4 a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~kG~akAaKka~R~aaEGlV~~~i~~~~~~gvlvEvNcETDFV 83 (196)
T 1aip_C 4 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCETDFV 83 (196)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEECSSHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHcCCchhhHhccccccCCeEEEEEecCCCEEEEEEEecCCccc
Confidence 45799999999999999999999999999999999999999999999999999999999997 7899999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhcCCCChhh----------------------------------------------hhccccc
Q psy13351 294 AKNNEFIKFSKKIAKLITENTPINLDQ----------------------------------------------LNNLKIK 327 (837)
Q Consensus 294 a~n~~f~~la~~ia~~iaa~~p~~~~~----------------------------------------------l~q~~i~ 327 (837)
|||+.|++|+++|||||||++|.+++. ++|+|++
T Consensus 84 Arn~~F~~lakdiAMhiAA~~P~~l~~~~vp~~~ve~E~~i~~~~~~~~gKPe~i~eKiveGrl~Kf~~e~~Ll~Q~fvk 163 (196)
T 1aip_C 84 ARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVK 163 (196)
T ss_dssp HTSHHHHHHHHHHHHHHHHHCCSBSSSTTSCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHBTTTSBCTT
T ss_pred cCCHHHHHHHHHHHHHHHHhCCccCChhhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhHhhhhcCCccC
Confidence 999999999999999999999987532 7899999
Q ss_pred CCCccHHHHHHHHHHhhCCceEEEEEEEEeeCC
Q psy13351 328 NNLLTVDEKCKELISRIGENIKIRRFKLFKTNN 360 (837)
Q Consensus 328 d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~ 360 (837)
|+++||+|++++.++++||||+|+||+||++|+
T Consensus 164 d~~~tV~~~l~~~~~~~G~~i~v~~F~R~~vG~ 196 (196)
T 1aip_C 164 DDKVKVKELIQQAIAKIGENIVVRRFCRFELGA 196 (196)
T ss_dssp CTTSBHHHHHHHHHHHHCSCCEEEEEEEEETTC
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEEEEEeCC
Confidence 999999999999999999999999999999983
|
| >3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=323.81 Aligned_cols=233 Identities=49% Similarity=0.788 Sum_probs=212.5
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
++++|+|+ +|+++....++.++++.++++|++|+++++.|++++||||||+.++++.....+++....++++++++.+
T Consensus 9 ~~riViKl--GGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~~~~g~~~~~~d~~g~l~t~~ 86 (243)
T 3ek6_A 9 YRRILLKL--SGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVTGDHMGMLATVI 86 (243)
T ss_dssp CSEEEEEE--CGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTTSCSSSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEE--chhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 46789995 5555554456689999999999999999999999999999998876665555577777888999999999
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
|+.+++.+|+..|++++++++.+...+..+++.+.+..+|+.|.|||++|+.|.+++++|++|+++|.+|+||+|+++||
T Consensus 87 N~~~l~~al~~~G~~a~~~~~~~~~~v~~~~~~~~~~~lL~~g~IpVv~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTd 166 (243)
T 3ek6_A 87 NALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATK 166 (243)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHcCCCeEEechhhcCcccCcCCHHHHHHHHHCCcEEEEECCCCCCcCChHHHHHHHHHHcCCCEEEEEeC
Confidence 99989999999999999999999887777888899999999999999999988999999999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|||||++||+.+|+|+++++++++|+.+.|.+++++.|+++|.++|++++|+|+++|+++.+++.|+.+||+|.+
T Consensus 167 VdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 167 VDGVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp SSSCBSSCGGGCTTCCBCSEECHHHHHHHTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred CCccCCCCCCCCCCceecccccHHHHHhCCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 999999999999999999999999998888889999999999999999999999999999999999999999976
|
| >4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=315.81 Aligned_cols=232 Identities=45% Similarity=0.717 Sum_probs=203.7
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccC-CCcchHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQN-IDRSTADYMGMLATI 492 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 492 (837)
.+++|+|. +|+++....++.++++.+++++++|+.+++.|+++|||||||+.++++.....+ ++..+.+.++++++.
T Consensus 7 ~k~iViKi--GGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~~~~G~~~~~~~~~~~~la~~ 84 (240)
T 4a7w_A 7 NKRVLVKF--SGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATV 84 (240)
T ss_dssp CCEEEEEE--CGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC---------CCCHHHHHHHHHHHHH
T ss_pred CCEEEEEE--CHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhHHHhcCCCCCCCHHHHHHHHHH
Confidence 45788995 555554445678999999999999999999999999999999888877644446 777788899998888
Q ss_pred HHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEee
Q psy13351 493 INSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKAT 572 (837)
Q Consensus 493 ~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilT 572 (837)
+|+.+++.+|+.+|++++++++.++....++++.+.+..+|+.|.|||++|+.|.+++++|++|+++|.+|+||+|+++|
T Consensus 85 ~n~~l~~~~l~~~G~~av~lt~~d~~~~~~~~~~~~i~~lL~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lT 164 (240)
T 4a7w_A 85 INAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKAT 164 (240)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCTTSCHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEecHHHcCcccCcCcHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHcCCCEEEEcc
Confidence 89888889999999999999999988777778899999999999999999988889999999999999999999999999
Q ss_pred ccCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCC-ccceEEE
Q psy13351 573 KVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK-NEGTLVY 647 (837)
Q Consensus 573 DVdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge-~~GT~I~ 647 (837)
||||||++||+.+|++++|++++++|+.+.|..++++.|+..|.++|++++|+||+.|+++.+++.|+ .+||.|.
T Consensus 165 dVdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i~ 240 (240)
T 4a7w_A 165 KVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK 240 (240)
T ss_dssp SSSSEESSCTTTCTTCCEESEECHHHHHHSSCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEEC
T ss_pred CCCceECCCCCCCCCCeEcceecHHHHHhcCccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceeeC
Confidence 99999999999999999999999999988888889999999999999999999999999999999987 4799983
|
| >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=319.80 Aligned_cols=231 Identities=42% Similarity=0.774 Sum_probs=202.2
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
++++|+| .|++.++++...++++.+++++++|++++++|+++|||||||+.++++.....+++..+.++++++++.+
T Consensus 50 ~krIViK---lGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~~gl~~~~~d~~g~lat~~ 126 (281)
T 3nwy_A 50 YSRVLLK---LGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVM 126 (281)
T ss_dssp CSEEEEE---ECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTTTTTCCHHHHHHHHHHHHHH
T ss_pred CcEEEEE---EchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHHhcCCCccchhHHHHHHHHH
Confidence 5778999 5556666655789999999999999999999999999999999988886555678888889999999999
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
|+.+++..|..+|++++.+++.+...+..++....+..+|++|.|||++|+.|.+++++|++|+++|.+|+||+|+++||
T Consensus 127 n~~~l~~~L~~~Gi~a~~~~~~~~~~~~~~~~~~~~l~lL~~g~IpVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD 206 (281)
T 3nwy_A 127 NSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKA 206 (281)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCGGGSEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEecccccccccccchHHHHHHHHcCCeEEEECCCCCCCCCHHHHHHHHHHHcCCCEEEEeec
Confidence 99999999999999999999988877766664444558999999999999888999999999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||||++||+.+|+|++|+++++.|+.+.|++++|+.|+.+|.++|++++|+|+++|++|.+++.|+.+||+|.
T Consensus 207 VdGVy~~dP~~~p~A~~i~~is~~e~~~~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 207 VDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp SSSCBCC-----CCCCBCSEECHHHHHTTTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred cCccccCCCCcCCCCeEcccccHHHHHHcCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999985
|
| >1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=297.96 Aligned_cols=232 Identities=54% Similarity=0.869 Sum_probs=199.4
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
+++|+|. +|+++...++..++.+.+++++++|+.+.+.|+++|||||||+.+.+......++++.+.+.++++++.++
T Consensus 8 ~~iViK~--GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (239)
T 1ybd_A 8 KRVLLKL--SGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMN 85 (239)
T ss_dssp SEEEEEE--CGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEE--chHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchhHHHcCCCCccHHHHHHHHHHHH
Confidence 4578895 55555444456788999999999999999999999999999988776532223566667778888888888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 574 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDV 574 (837)
..++..+|..+|++++++++.+...+..++....+..+++.|.|||++|+.|.+.+++|++|+++|.+|+||+|+|||||
T Consensus 86 ~~l~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ipVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~liilTdV 165 (239)
T 1ybd_A 86 ALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNV 165 (239)
T ss_dssp HHHHHHHHHHTTCCEEEEESSCBSSSCEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECSS
T ss_pred HHHHHHHHHHcCCCeEEEeeecccccccchhHHHHHHHHhCCcEEEEECCccCCCCCcHHHHHHHHHhcCCCEEEEeeCC
Confidence 88889999999999999998877554334433333478999999999998888889999999999999999999999999
Q ss_pred CccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 575 DGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 575 dGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
||||++||+.+|++++|++++++|+.+.|.+++|+.|+.+|.++|++++|+|+.+|+.+.+++.|+.+||+|.+
T Consensus 166 dGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 166 DGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp SSCBSSCGGGCTTCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred CccCCCCCCCCCCCeEccccCHHHHHHhcccccCHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 99999999999999999999999998888888999999999999999999999999999999999999999974
|
| >2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=300.55 Aligned_cols=234 Identities=40% Similarity=0.654 Sum_probs=203.0
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+++|+|. +|+++...++..++++.+++++++|+.+.+.|+++|||||||+.+.+......++++...+.++++++.+
T Consensus 12 ~~~iViKi--GGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 89 (255)
T 2jjx_A 12 YKRVLIKL--SGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEADNIGTLGTII 89 (255)
T ss_dssp CSEEEEEE--CGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEE--CHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhHHHHcCCCCCChHHHhHHHHHH
Confidence 35678885 5555544446778999999999999999989999999999997765543223356666667788888888
Q ss_pred HHHHHHHHHHH-cCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEee
Q psy13351 494 NSLALFDILNK-SGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKAT 572 (837)
Q Consensus 494 ~~~ll~~~L~~-~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilT 572 (837)
++.+|+.+|.. +|+++.++++.+...+..+++...+..+++.|.|||++|+.|++.+++|++|+++|.+|+||+|++||
T Consensus 90 ~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~~~~~~~~~~lL~~g~IpVi~gg~g~~~vttD~~Aa~lA~~l~Ad~liilT 169 (255)
T 2jjx_A 90 NSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAK 169 (255)
T ss_dssp HHHHHHHHHHHHCSSCEEEEESSCCCSSSEECCHHHHHHHHHTTCEEEEESTTSCSSCCSHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHhhcCCceEEecHHHcCcccCcccHHHHHHHHhCCcEEEEeCCCCCCccchHHHHHHHHHhcCCCEEEEEe
Confidence 99889999999 99999999998876444456666677899999999999877788899999999999999999999999
Q ss_pred -ccCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 573 -KVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 573 -DVdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
||||||++||+.+|++++|++++++|+.+.|..++++.|+++|.+.|++++|+|+.+|+++.+++.|+.+||+|.++
T Consensus 170 ~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~G~~~m~~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 170 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp SSCCSCBSSCTTTCSSCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred CCcCeeECCCCCCCCCCeEeeEecHHHHHHcCCccCHHHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999875
|
| >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=296.53 Aligned_cols=232 Identities=45% Similarity=0.756 Sum_probs=194.3
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
+++|+|. +|+++...++..++++.+++++++|+.+.+.|+++|||||||+.+.+......++++.+.+.++++++.++
T Consensus 9 k~iViKl--GGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~g~~~~~~d~~~~~~~~~~ 86 (247)
T 2a1f_A 9 KRILLKL--SGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMN 86 (247)
T ss_dssp SEEEEEE--CGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEE--ChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHcCCCCCcHHHHHHHHHHHH
Confidence 4578995 55555444556789999999999999999999999999999987665532233566777888888888888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 574 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDV 574 (837)
..++..+|...|++++++++.+...+...+....+..+++.|.|||++|+.|.+.+++|++|+++|.+|+||+|+|+|||
T Consensus 87 ~~ll~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~liilTDV 166 (247)
T 2a1f_A 87 GLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKV 166 (247)
T ss_dssp HHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHcCCCeEEecccccccccchhhHHHHHHHHhCCCEEEEeCCcCCCCCCcHHHHHHHHHhCCCCEEEEEeCC
Confidence 88899999999999999999887644333434556788999999999998888889999999999999999999999999
Q ss_pred CccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 575 DGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 575 dGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
||||++||+.+|++++|++++++|+.+.|.+++|++|+.+|.++|++++|+|+.+|+.+.+++.|+.+||+|..
T Consensus 167 dGvy~~dP~~~p~a~~i~~i~~~e~~~~g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~ 240 (247)
T 2a1f_A 167 DGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE 240 (247)
T ss_dssp SSCBCC-------CCBCSEECHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECC
T ss_pred CcccCCCCCCCCCCeEcccCCHHHHHHcCccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEee
Confidence 99999999999999999999999998888888999999999999999999999999999999999999999964
|
| >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=292.57 Aligned_cols=233 Identities=41% Similarity=0.673 Sum_probs=199.3
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
+++|+|+ +|+++...++..++.+.+.+++++|+.+.+.|+++|||||||+.+.+......++++.+.+.++++++.++
T Consensus 8 k~iViKl--GGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~lg~~~~~~~~~~~~~~~~~ 85 (252)
T 1z9d_A 8 QRILIKL--SGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMN 85 (252)
T ss_dssp SEEEEEE--CGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEE--chHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHHcCCCCCchHHHHHHHHHHH
Confidence 4578895 55555444556789999999999999999999999999999976555421223566667778888888888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEee-c
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKAT-K 573 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilT-D 573 (837)
..++..+|...|++++++++.+...+...+....+..+|+.|.|||++|+.|.+++++|++|+++|.+|+||+|+|+| |
T Consensus 86 ~~ll~~al~~~G~~~~~~~~~~~~~~~~~~~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilT~D 165 (252)
T 1z9d_A 86 ALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNG 165 (252)
T ss_dssp HHHHHHHHHTTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHcCCCeEEEeccccccccCcchHHHHHHHHhCCCEEEEeCCcCCCCCChHHHHHHHHHhcCCCEEEEecCC
Confidence 888999999999999999988765442233334557899999999999988888899999999999999999999999 9
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
|||||++||+.+|++++|++++++|+.+.|...+|++|+.+|.++|++++|+|+.+|+.+.+++.|+.+||+|.++
T Consensus 166 VdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 241 (252)
T 1z9d_A 166 VDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK 241 (252)
T ss_dssp CCSCBSSCTTTCTTCCBCSEEEHHHHHTTTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred CCeeeCCCCCCCCCCeEeeEecHHHHHhccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecC
Confidence 9999999999999999999999999988776777999999999999999999999999999999999999999875
|
| >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-33 Score=292.77 Aligned_cols=231 Identities=40% Similarity=0.600 Sum_probs=189.4
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+++|+|+ +|+++...++..++++.+++++++|+.+. .|+++|||||||+.+.+......++++.+.+.++++++.+
T Consensus 24 ~k~iVIKi--GGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~~~~~g~~~~~~~~~~~l~~~~ 100 (256)
T 2va1_A 24 KQRIVIKI--SGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATII 100 (256)
T ss_dssp CSEEEEEE--CGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCEEEEEe--chhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccchHHHcCCCCCchhHHHHHHHHH
Confidence 35679995 55555444456789999999999999998 8999999999998766643223366666777888888888
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
+..++..+|..+|++++++++.+...+..++....+..+|+.|.|||++|+.|.+..++|++|+++|.+|+||+|+++||
T Consensus 101 n~~l~~~~l~~~Gi~a~~~~~~t~~~~~~~~~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD 180 (256)
T 2va1_A 101 NGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKN 180 (256)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCCTTTCEECCHHHHHHHHHTTCEEEEESTTSSSSCCHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEEeeeecccccchhhHHHHHHHHhCCcEEEEECCCCCCCCChhHHHHHHHHhCCCCEEEEeec
Confidence 88888999999999999999887755543443344578999999999999888888999999999999999999999999
Q ss_pred -cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 574 -VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 574 -VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||||++||+.+|++++|++++++|+.+.+...+|+.|+.+|.++|++++|+|+.+|+++.+++.|+.+||+|.
T Consensus 181 ~VdGVy~~dP~~~p~a~~i~~is~~e~~~~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 181 GVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp SCCSBCSCC--------CBSEEEHHHHHHHTCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred ccCeEEcCCCCCCCCCEEccEEcHHHHHHhccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 99999999999999999999999998775444559999999999999999999999999999999999999996
|
| >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=278.57 Aligned_cols=211 Identities=22% Similarity=0.329 Sum_probs=180.0
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc--ccccCCCcchHHHHHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS--NKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
+|+|. +|++ +.++ +++.+++++++|+.+.+.|+++|||||||..+.++. ....++++.+++.++++++.++
T Consensus 3 iViK~--GGs~-l~~~----~~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 75 (226)
T 2j4j_A 3 IILKI--SGKF-FDED----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLN 75 (226)
T ss_dssp EEEEE--CTHH-HHTC----CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEe--cccc-ccCC----CHHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 45673 4444 4333 678899999999999888999999999998777641 2233567778899999888888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 574 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDV 574 (837)
+.+++.+|..+|+++ .+++.+.+..+++.|.|||++| |.+++++|++|+++|.+|+||+|++||||
T Consensus 76 ~~l~~~~l~~~g~~~------------~~~~~~~i~~ll~~g~ipVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liilTdV 141 (226)
T 2j4j_A 76 AYLVMFSLQDLAYMH------------VPQSLEEFIQDWSHGKVVVTGG--FQPGQSTAAVAALVAEASSSKTLVVATNV 141 (226)
T ss_dssp HHHHHHHHTTSBCSC------------CCSSHHHHHHHHTTSSBEEECC--CSTTSCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHhCCCC------------CcCCHHHHHHHHHCCCEEEEcC--CCCCCCcHHHHHHHHHhcCCCEEEEeecc
Confidence 988888899988854 2466788999999999999999 67889999999999999999999999999
Q ss_pred CccccCCCCCCCCceeccccCHHHHHH--------hccc--cchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccce
Q psy13351 575 DGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLE--IMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT 644 (837)
Q Consensus 575 dGVy~~dP~~~~~a~~I~~is~~e~~~--------~G~~--v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT 644 (837)
||||++||+.+|++++|++++++|+.+ .|+| ++|++|+.+|.++|++++|+|+.+|+.+.+++.|+.+||
T Consensus 142 dGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT 221 (226)
T 2j4j_A 142 DGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSS 221 (226)
T ss_dssp SSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCE
T ss_pred ceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCce
Confidence 999999999999999999999988766 2677 999999999999999999999999999999999999999
Q ss_pred EEEE
Q psy13351 645 LVYE 648 (837)
Q Consensus 645 ~I~~ 648 (837)
+|.+
T Consensus 222 ~i~~ 225 (226)
T 2j4j_A 222 IIEP 225 (226)
T ss_dssp EEEC
T ss_pred EEee
Confidence 9975
|
| >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=279.81 Aligned_cols=215 Identities=26% Similarity=0.348 Sum_probs=184.6
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcc--cccccCCCcchHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGI--SNKIQNIDRSTADYMGMLAT 491 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~--~~~~~~~~~~~~~~~~~~~~ 491 (837)
.+++|+|+ |++.+.++. ++++.+++++++|+.+.+ |+++|||||||..+.++ .....+++...++..+++++
T Consensus 19 ~k~iViKl---GGs~l~~~~--~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~~gl~~~~~~~~~~~~~ 92 (244)
T 2brx_A 19 HMRIVFDI---GGSVLVPEN--PDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQIT 92 (244)
T ss_dssp CCEEEEEE---CHHHHCSSS--CCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEe---chhhcCCCC--CCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhchHHHHHHcCCCcccHHHHHHHHH
Confidence 35678994 444454443 888999999999999988 99999999999877763 12334678888899999988
Q ss_pred HHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEe
Q psy13351 492 IINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA 571 (837)
Q Consensus 492 ~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liil 571 (837)
.+++.++..+|..+|++. .+++.+.+..+|+.|.|||++| |.+..++|++|+++|.+|+||+|+++
T Consensus 93 ~~~~~l~~~~l~~~g~~~------------~~~~~~~i~~lL~~g~IpVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liil 158 (244)
T 2brx_A 93 RANAMLLIAALREKAYPV------------VVEDFWEAWKAVQLKKIPVMGG--THPGHTTDAVAALLAEFLKADLLVVI 158 (244)
T ss_dssp HHHHHHHHHHHGGGBCSS------------CBCSHHHHHHHHHTTCBCEECC--CSTTCCHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCC------------CcCCHHHHHHHHhCCCEEEEcC--CCCCCCchHHHHHHHHHcCCCEEEEE
Confidence 888888888899988753 2467788899999999999998 67778999999999999999999999
Q ss_pred eccCccccCCCCCCCCceeccccCHHHHHHh----c-----cccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCcc
Q psy13351 572 TKVDGIYNSDPNKCLSAIIYKKITFDEVISK----K-----LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNE 642 (837)
Q Consensus 572 TDVdGVy~~dP~~~~~a~~I~~is~~e~~~~----G-----~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~ 642 (837)
|||||||++||+.+|++++|++++++|+.+. | ++++++.|++++.+.|++++|+||+.|+.+.+++.|+.+
T Consensus 159 TDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~ 238 (244)
T 2brx_A 159 TNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHN 238 (244)
T ss_dssp CSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSS
T ss_pred eCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCC
Confidence 9999999999999999999999999888662 2 278899999999999999999999999999999999999
Q ss_pred ceEEEE
Q psy13351 643 GTLVYE 648 (837)
Q Consensus 643 GT~I~~ 648 (837)
||+|.+
T Consensus 239 GT~i~~ 244 (244)
T 2brx_A 239 GTTIEP 244 (244)
T ss_dssp SEEECC
T ss_pred ceEecC
Confidence 999964
|
| >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=261.51 Aligned_cols=193 Identities=26% Similarity=0.397 Sum_probs=167.3
Q ss_pred ccchhhhhhhhHHhhhcCceEEEEeCcchhhhcc--cccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehh
Q psy13351 438 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGI--SNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAI 515 (837)
Q Consensus 438 ~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~ 515 (837)
++.+++++++|+.+.+ |+++|||||||..+.++ .....++++..++.++++++.+++.+++.++... +..
T Consensus 16 ~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~------ 87 (219)
T 2ij9_A 16 SEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSA-AKK------ 87 (219)
T ss_dssp HHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCTTB-CSS------
T ss_pred HHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHcCCCccchHHHHHHHHHHHHHHHHHHHHHh-cCC------
Confidence 6789999999999988 99999999999877763 2233467888899999998888998888766443 110
Q ss_pred chhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccC
Q psy13351 516 SIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKIT 595 (837)
Q Consensus 516 ~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is 595 (837)
.+++.+.+..+|+.|.|||++| |.+..++|++|+++|..|+||+|+++|||||||++||+.+|++++|++++
T Consensus 88 ------~~~~~~~i~~ll~~g~ipVi~~--g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~ 159 (219)
T 2ij9_A 88 ------VPVDFMEAEELSKLYRVVVMGG--TFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLS 159 (219)
T ss_dssp ------CCSSHHHHHHHHTTCSEEEECC--CSSSSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEEC
T ss_pred ------CcCCHHHHHHHHHCCCEEEEeC--CCCCCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeC
Confidence 3567888999999999999999 67777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh----cc-----ccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 596 FDEVISK----KL-----EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 596 ~~e~~~~----G~-----~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++|+.+. |. +++++.|++++.+.|++++|+|| +|+.+.+++.|+.+||+|+
T Consensus 160 ~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 160 PQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp HHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred HHHHHHHHhcCCCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 9988762 33 78999999999999999999999 9999999999999999984
|
| >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-29 Score=264.78 Aligned_cols=228 Identities=20% Similarity=0.234 Sum_probs=174.2
Q ss_pred HHHHHHhhhhhhhccC-CCcc-ccccchhhhhhhhHHhhhcCceEEEEeCcchhhh---cccccccCCCcch---HHHHH
Q psy13351 416 LAVLKAQQLGEALMKG-DAYN-INSSIIKNIISEISEIVSCGIELAIVIGGGNICR---GISNKIQNIDRST---ADYMG 487 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g-~~~~-i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~---~~~~~~~~~~~~~---~~~~~ 487 (837)
++|+|+ +|+++... .+.. ++++.+++++++|+.+. +.++|||||||+... +......++...+ .++.+
T Consensus 4 ~iVIKl--GG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~~~~~~gi~~~~~~~~g~~~~~~G 79 (269)
T 3ll9_A 4 MIILKL--GGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHPFAGEYRIGSEIENEEDLRRRRFG 79 (269)
T ss_dssp CEEEEE--CHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHHHHHHHTTTSCCCSHHHHHHHHHH
T ss_pred EEEEEE--ChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHHHHHHcCCCcccccCcccccccch
Confidence 457784 45544433 3455 99999999999999876 579999999985544 3333333443221 22344
Q ss_pred HHHHHH----HHHHHHHHHHHcCCceeEeehhchhhh----hhccchHHHHHHHhCCCEEEEeCCCC--------CCCCc
Q psy13351 488 MLATII----NSLALFDILNKSGIISHVMSAISIEKF----LESYIPLNAIKYLEEGKVVIFAGGIG--------NPFFT 551 (837)
Q Consensus 488 ~~~~~~----~~~ll~~~L~~~gi~a~~l~~~~~~~~----~~~~~~~~i~~ll~~g~VPVv~G~~G--------~~~~s 551 (837)
+..+.. .+..++++|.++|++++++++.+.... +..++.+.+..+|+.|.|||++|+.+ ..+++
T Consensus 80 ~rvT~~~~~~ln~~l~~~L~~~G~~a~~l~g~~~~~~~~g~v~~v~~~~i~~lL~~g~ipVi~~~~~~~~~~~g~~~~~~ 159 (269)
T 3ll9_A 80 FALTQNWVKKLNSHVCDALLAEGIPAVSMQPSAFIRAHAGRISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVIS 159 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEEECCHHHHHHHHTTCEEEEECEEEEBSCTTTSEEEEC
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCcEEEEcchHcCeEecCeeeeecHHHHHHHHHCCCEEEECCCEEecccccCcceecc
Confidence 444442 344578889999999999999887432 45678899999999999999998322 12467
Q ss_pred chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH----------hccccchHHHHHHHHhCCCC
Q psy13351 552 TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 552 ~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~----------~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+|++|+++|.+|+||+|+++|||||||++||+.+|++++|+++++.|+.+ .|+|.+|+.|+..+.++|++
T Consensus 160 ~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~Gv~ 239 (269)
T 3ll9_A 160 GDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVE 239 (269)
T ss_dssp HHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHhCCCe
Confidence 99999999999999999999999999999999999999999999876643 48899999999999899999
Q ss_pred EEEEEccCcchHHHHHcCCcc-ceEEE
Q psy13351 622 IRVFSIIKSGALKRVIEGKNE-GTLVY 647 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~-GT~I~ 647 (837)
++|+||+.|+++.+++.|+.+ ||+|.
T Consensus 240 v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 240 SEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp EEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred EEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 999999999999999999998 99986
|
| >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-29 Score=273.79 Aligned_cols=230 Identities=19% Similarity=0.171 Sum_probs=153.4
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcch-hhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGN-ICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
+++|+| .|++.++++...++.+.+.+++++|+.+++.|+++|||||||. ..+..... .-.+..++..+++++.+
T Consensus 5 k~iVIK---iGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGgi~~g~~~lg~--~~~~~~l~~~qa~aavG 79 (367)
T 2j5v_A 5 QTLVVK---LGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGY--PELPATIASKQLLAAVG 79 (367)
T ss_dssp CEEEEE---ECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTS--CCCCSSHHHHHHHHHHH
T ss_pred CEEEEE---ECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHcCC--CCCCCCHHHHHHHHHHH
Confidence 457888 5555565555679999999999999999999999999999972 22221111 12345677777776554
Q ss_pred H---HHHHHHHHHHcCCceeE--eehhchhhhhhccch-HHHHHHHhCCCEEEEeCCCC-----CCCCcchHHHHHHHHH
Q psy13351 494 N---SLALFDILNKSGIISHV--MSAISIEKFLESYIP-LNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAAE 562 (837)
Q Consensus 494 ~---~~ll~~~L~~~gi~a~~--l~~~~~~~~~~~~~~-~~i~~ll~~g~VPVv~G~~G-----~~~~s~D~lAa~lA~~ 562 (837)
+ ...+..+|..+|+++.. ++..++.......+. ..+..+|+.|.|||+++... ....++|++|+++|.+
T Consensus 80 q~~l~~~~~~~l~~~G~~~~qvllt~~d~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~~el~~gd~D~lAa~vA~~ 159 (367)
T 2j5v_A 80 QSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAIL 159 (367)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCCGGGCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCceEEEEEecccccCceEEEhHHHHHHHHHHCCCEEEECCCCceecccccCCCHHHHHHHHHHh
Confidence 4 44556669999998753 233333222223343 67888999999999985311 2245699999999999
Q ss_pred cCCcEEEEeeccCccccCCCCCCCCceeccccCH--HHHHH----------hccccchHHHHHHHHhCCCCEEEEEccCc
Q psy13351 563 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKS 630 (837)
Q Consensus 563 L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~ 630 (837)
++||.|+|||||||||++||+.+|++++|+++++ +|+.+ .|+|.+|+.|+..|.++|++++|+||..|
T Consensus 160 l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~ 239 (367)
T 2j5v_A 160 AGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKP 239 (367)
T ss_dssp HTCSEEEEEECC------------------------------------------CHHHHHHHHHHHHTTCEEEEEETTST
T ss_pred cCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999999999999999999999999999 77654 36788899999999999999999999999
Q ss_pred chHHHHHcCCccceEEEEe
Q psy13351 631 GALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 631 ~~i~~al~Ge~~GT~I~~~ 649 (837)
+.|.+++.|+.+||+|.+.
T Consensus 240 ~~L~~~l~g~~~GT~i~~~ 258 (367)
T 2j5v_A 240 GVIGDVMEGISVGTLFHAQ 258 (367)
T ss_dssp THHHHHHHTCCCSEEECCC
T ss_pred hHHHHHhcCCCCcEEEEcC
Confidence 9999999999999999886
|
| >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=256.70 Aligned_cols=221 Identities=16% Similarity=0.185 Sum_probs=169.7
Q ss_pred HHHHHHHhhhhhhhcc-CCCccccccchhhhhhhhHHhhhcCceEE-EEeCcchhhhcccccccCCCcc-------hHHH
Q psy13351 415 SLAVLKAQQLGEALMK-GDAYNINSSIIKNIISEISEIVSCGIELA-IVIGGGNICRGISNKIQNIDRS-------TADY 485 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~-g~~~~i~~~~i~~la~~I~~l~~~G~~vV-IVhGGG~~~~~~~~~~~~~~~~-------~~~~ 485 (837)
+++|+|. +|+++.. ++++.++++.+++++++|+. |+++| ||||||+....+... .++++. .+..
T Consensus 4 k~iViKi--GG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~~~~~~~~-~gi~~~~~~~d~~gl~~ 76 (249)
T 3ll5_A 4 TMMILKI--GGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHIKAME-FGLPGPKNPRSSIGYSI 76 (249)
T ss_dssp CCEEEEE--CHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGGTHHHHHH-HTCSEECCHHHHHHHHH
T ss_pred eEEEEEE--CccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHHHHHHHHH-hCCCcCCCccccccHHH
Confidence 4678885 5555543 24577999999999999985 99999 999998766553222 233332 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCC------CCCCcchHHHHHH
Q psy13351 486 MGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG------NPFFTTDTTAALR 559 (837)
Q Consensus 486 ~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G------~~~~s~D~lAa~l 559 (837)
..+....++.. +..+|..+|++++++++.++....+. +.+.+..+|+.|.|||++|+.+ .+++++|++|+++
T Consensus 77 t~~~~~~ln~~-~v~~l~~~G~~a~~l~~~~~~~~g~v-~~~~i~~ll~~g~ipVi~~~~~~~~~~~~~~~~~D~~Aa~l 154 (249)
T 3ll5_A 77 VHRDMENLDLM-VIDAMIEMGMRPISVPISALRYDGRF-DYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADM 154 (249)
T ss_dssp HHHHHHHHHHH-HHHHHHHTTCCEEECCGGGSCBSSSB-CCHHHHHHHHTTCEEEEECEEEEEETTEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHCCCcEEEEcHHHcccccEE-cHHHHHHHHHCCCEEEECCCEEEcCCCceeeecHHHHHHHH
Confidence 33332234444 44889999999999999887554444 7889999999999999997321 2246799999999
Q ss_pred HHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHH---H----hccccchHHHHHHH-HhCCCCEEEEEccCcc
Q psy13351 560 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI---S----KKLEIMDSTAFSFC-RDQKLPIRVFSIIKSG 631 (837)
Q Consensus 560 A~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~---~----~G~~v~~~~Aa~~a-~~~gi~v~I~ng~~~~ 631 (837)
|.+|+||.|+++|||||||++||+.+|+++++++++. ++. + .|+|.+|+.||..+ .++|++++|+||+.|+
T Consensus 155 A~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~~-~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~~ 233 (249)
T 3ll5_A 155 AELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDT-NITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPE 233 (249)
T ss_dssp HHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEECC-CC-------------HHHHHHHHHHHTTCTTCEEEEETTSGG
T ss_pred HHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHHH-HHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCChh
Confidence 9999999999999999999999999999999999853 221 1 68999999999888 8999999999999999
Q ss_pred hHHHHHcCCcc-ceEE
Q psy13351 632 ALKRVIEGKNE-GTLV 646 (837)
Q Consensus 632 ~i~~al~Ge~~-GT~I 646 (837)
++.+ |.|+.+ ||+|
T Consensus 234 ~l~~-l~g~~~~GT~i 248 (249)
T 3ll5_A 234 RIGD-IGKESFIGTVI 248 (249)
T ss_dssp GGGG-TTSTTCCSEEE
T ss_pred HHHH-hCCCCCCCEEe
Confidence 9999 999988 9998
|
| >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=259.39 Aligned_cols=222 Identities=18% Similarity=0.213 Sum_probs=179.9
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccc----------cCCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI----------QNIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~----------~~~~~~~~~ 484 (837)
+++|+|+ +|+++ . +++.+..++++|+.+.+.|+++|||||||+......... +..++.+++
T Consensus 37 k~iVIKl--GGs~l-~------~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~~g~R~t~~~~l~ 107 (298)
T 2rd5_A 37 KTIVVKY--GGAAM-T------SPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTME 107 (298)
T ss_dssp CEEEEEE--CTHHH-H------CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHH
T ss_pred CEEEEEE--Cchhh-C------ChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCccccCCcccCCHHHHH
Confidence 4578885 44443 2 245788999999999999999999999985443222211 112567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhh----------------hhhccchHHHHHHHhCCCEEEEeCC----
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEK----------------FLESYIPLNAIKYLEEGKVVIFAGG---- 544 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~----------------~~~~~~~~~i~~ll~~g~VPVv~G~---- 544 (837)
.+++++++..+..++..|..+|++++++++.+... .+..++.+.+..+|+.|.|||++|.
T Consensus 108 ~~~~~~~G~~n~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~ 187 (298)
T 2rd5_A 108 IVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADD 187 (298)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEESEEECT
T ss_pred HHHHHHhchHHHHHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcCeeECC
Confidence 88888877777789999999999999998875421 1234678889999999999999983
Q ss_pred CCCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHH
Q psy13351 545 IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCR 616 (837)
Q Consensus 545 ~G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~ 616 (837)
.|.. ++++|++|+++|.+|+||+|+|+|||||||++||+ | +++|++++++|+.+ .|+|.+|+.|+..+.
T Consensus 188 ~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~~a~ 264 (298)
T 2rd5_A 188 SGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSL 264 (298)
T ss_dssp TSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHH
T ss_pred CCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHHHHH
Confidence 2333 24799999999999999999999999999999997 4 89999999988866 367999999999999
Q ss_pred hCCCC-EEEEEccCcchH-HHHHcCCccceEEEE
Q psy13351 617 DQKLP-IRVFSIIKSGAL-KRVIEGKNEGTLVYE 648 (837)
Q Consensus 617 ~~gi~-v~I~ng~~~~~i-~~al~Ge~~GT~I~~ 648 (837)
++|++ ++|+||..|+.| .+++.|+.+||+|.+
T Consensus 265 ~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 265 AQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp HTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred HcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 99998 999999999998 889999999999974
|
| >1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-29 Score=212.29 Aligned_cols=82 Identities=28% Similarity=0.408 Sum_probs=80.8
Q ss_pred CCCCccccceeEEEecccccccceeeeeeccCCceEEEecCC-cccHHHHHHHHHhcCCCccceecCCeeEEeCCCCCHH
Q psy13351 682 GRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKE 760 (837)
Q Consensus 682 gr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d-~~~~~~I~kaI~~s~l~~~p~~~~~~i~v~iP~~T~E 760 (837)
||+||++||+|+|+|||.++||+|+|+|+++++|+|+|+||| ++++++|+|||++||||+||++||+.|||+||+||+|
T Consensus 1 GRa~p~lld~I~V~yyG~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP~lTeE 80 (84)
T 1wih_A 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG 80 (84)
T ss_dssp CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred CCCChHHhCCEEEEECCCCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCCCCChh
Confidence 899999999999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred HHH
Q psy13351 761 RRE 763 (837)
Q Consensus 761 ~R~ 763 (837)
||+
T Consensus 81 rR~ 83 (84)
T 1wih_A 81 PSS 83 (84)
T ss_dssp SCC
T ss_pred ccC
Confidence 996
|
| >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=253.07 Aligned_cols=223 Identities=15% Similarity=0.128 Sum_probs=167.2
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchh-hhcccccccCCCcchHHHHHHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNI-CRGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
++|+|+ +|+++. +...++++.+++++++|+.+.+. +++|||||||.. ......... ....+. +++++..+
T Consensus 3 ~iViKl--GGs~l~--~~~~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg~~~~~~~~g~~~---~~~~~~-~~l~~~~q 73 (251)
T 2ako_A 3 RIVVKV--GSHVIS--EENTLSFERLKNLVAFLAKLMEK-YEVILVTSAAISAGHTKLDIDR---KNLINK-QVLAAIGQ 73 (251)
T ss_dssp EEEEEE--CHHHHB--CSSSBCHHHHHHHHHHHHHHHHH-SEEEEEECCHHHHHHHHCCCCS---SSHHHH-HHHHHHHH
T ss_pred EEEEEe--CcceeC--CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHhCCcc---CCchHH-HHHHHHHH
Confidence 457784 555554 33468889999999999999888 999999998722 221222211 122222 33333333
Q ss_pred ---HHHHHHHHHHcCCceeEeehhch--hhhhhccch-HHHHHHHhCCCEEEEeCCCC--C---CCCcchHHHHHHHHHc
Q psy13351 495 ---SLALFDILNKSGIISHVMSAISI--EKFLESYIP-LNAIKYLEEGKVVIFAGGIG--N---PFFTTDTTAALRAAEI 563 (837)
Q Consensus 495 ---~~ll~~~L~~~gi~a~~l~~~~~--~~~~~~~~~-~~i~~ll~~g~VPVv~G~~G--~---~~~s~D~lAa~lA~~L 563 (837)
...+..+|..+|+++..+...+. .......+. +.+..+++.|.|||++|+.. . ...++|++|+++|.+|
T Consensus 74 ~~l~~~~~~~l~~~G~~~~~i~~~~~~~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~~~~~~~~~D~~Aa~lA~~l 153 (251)
T 2ako_A 74 PFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFF 153 (251)
T ss_dssp HHHHHHHHHHHGGGTCCEEEEEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeccchhcCcceEehHHHHHHHHHHCCCEEEEeCCCceeecceeecCchHHHHHHHHhc
Confidence 33456679999999865543321 111223334 77888899999999996421 1 2567999999999999
Q ss_pred CCcEEEEeeccCccccCCCCCCCCceeccccCHH--HHHH----------hccccchHHHHHHHHhCCCCEEEEEccCcc
Q psy13351 564 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD--EVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSG 631 (837)
Q Consensus 564 ~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~--e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~ 631 (837)
+||+|+++|||||||++||+.+|++++|+++++. |+.+ .|+|.+|+.|+..|.++|++++|+||..|+
T Consensus 154 ~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~~ 233 (251)
T 2ako_A 154 DADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLS 233 (251)
T ss_dssp TCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred CCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCChh
Confidence 9999999999999999999999999999999987 6543 367999999999999999999999999999
Q ss_pred hHHH--HHcCCccceEEE
Q psy13351 632 ALKR--VIEGKNEGTLVY 647 (837)
Q Consensus 632 ~i~~--al~Ge~~GT~I~ 647 (837)
++.+ ++.|+.+||+|.
T Consensus 234 ~l~~~~~~~g~~~GT~i~ 251 (251)
T 2ako_A 234 VAKTFLLEDKQIGGTLFE 251 (251)
T ss_dssp HHHHHHHSCCCCSSEEEC
T ss_pred hhhhhHHhcCCCCceEeC
Confidence 9999 999999999983
|
| >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-28 Score=259.95 Aligned_cols=224 Identities=17% Similarity=0.206 Sum_probs=180.0
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---ccc-------CCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ-------NIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~-------~~~~~~~~ 484 (837)
+++|+|. +|++ +. +++.++.++++|+.+.+.|+++|||||||+....... ... ..++.+++
T Consensus 26 k~iViKl--GGs~-l~------~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~~g~R~t~~~~l~ 96 (299)
T 2ap9_A 26 KVVVVKY--GGNA-MT------DDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEVLD 96 (299)
T ss_dssp CEEEEEE--CTHH-HH------SHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCCCSSSSCCBCHHHHH
T ss_pred CeEEEEE--Cchh-hC------CchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCcccccCCcccCCHHHHH
Confidence 3578884 4444 32 2357888999999999999999999999854332211 111 12456778
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhh---------------------hccchHHHHHHHhCCCEEEEeC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFL---------------------ESYIPLNAIKYLEEGKVVIFAG 543 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~---------------------~~~~~~~i~~ll~~g~VPVv~G 543 (837)
.+++++++..+..++..|..+|++++++++.+.+.+. ..++.+.+..+|+.|.|||++|
T Consensus 97 ~~~~~~~G~l~~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVv~~ 176 (299)
T 2ap9_A 97 VARMVLFGQVGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVST 176 (299)
T ss_dssp HHHHHHHHTHHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHhhHHHHHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEEECC
Confidence 8888888877777899999999999999998853221 1146889999999999999998
Q ss_pred C----CCCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-----hccccchHHHHH
Q psy13351 544 G----IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFS 613 (837)
Q Consensus 544 ~----~G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-----~G~~v~~~~Aa~ 613 (837)
+ .|.. ++++|++|+.+|.+|+||+|+|||||||||++||+ ++++|++++++|+.+ .|+|.+|+.|+.
T Consensus 177 v~~~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~aa~ 253 (299)
T 2ap9_A 177 LAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVEACL 253 (299)
T ss_dssp EEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHHHHH
T ss_pred eeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHHHHH
Confidence 3 2222 24799999999999999999999999999999997 478999999998876 478999999999
Q ss_pred HHHhCCCC-EEEEEccCcchH-HHHHcCCccceEEEEee
Q psy13351 614 FCRDQKLP-IRVFSIIKSGAL-KRVIEGKNEGTLVYEIY 650 (837)
Q Consensus 614 ~a~~~gi~-v~I~ng~~~~~i-~~al~Ge~~GT~I~~~~ 650 (837)
.|.++|++ ++|+||..|+++ .+++.|+.+||+|.+++
T Consensus 254 ~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~~ 292 (299)
T 2ap9_A 254 RAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRGE 292 (299)
T ss_dssp HHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECCC
T ss_pred HHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecCC
Confidence 99999998 999999999986 78999999999998764
|
| >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=258.59 Aligned_cols=223 Identities=17% Similarity=0.156 Sum_probs=180.0
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---ccc----C---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~----~---~~~~~~~ 484 (837)
+++|+|+ +|++ +.+ ++.+..++++|+.+.+.|+++|||||||+....... ... + .++.+++
T Consensus 50 k~iVIKl--GGs~-l~~------~~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g~Rvt~~~~l~ 120 (321)
T 2v5h_A 50 RTVVVKY--GGAA-MKQ------EELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTME 120 (321)
T ss_dssp CEEEEEE--CTHH-HHS------HHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCBSSSSBCBCHHHHH
T ss_pred CeEEEEE--Cchh-hCC------chHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCccccCCcccCCHHHHH
Confidence 3578884 4443 322 467889999999999999999999999855432222 111 1 2457788
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------------hhccchHHHHHHHhCCCEEEEeC----CC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------LESYIPLNAIKYLEEGKVVIFAG----GI 545 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------------~~~~~~~~i~~ll~~g~VPVv~G----~~ 545 (837)
.++++++|..+..++..|..+|++++++++.+...+ +..++.+.+..+|+.|.|||+++ ..
T Consensus 121 ~~~~~~~G~in~~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~~ 200 (321)
T 2v5h_A 121 VVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADEN 200 (321)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEESEEECTT
T ss_pred HHHHHHhChHHHHHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecHHHHHHHHHCCCeEEEeCceECCC
Confidence 888888888788899999999999999987754211 22356788999999999999996 22
Q ss_pred CCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHh
Q psy13351 546 GNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRD 617 (837)
Q Consensus 546 G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~ 617 (837)
|.. ++++|++|+++|.+|+||+|+|+|||||||++||+ ++++|++++++|+.+ .|+|.+|+.|+..|.+
T Consensus 201 G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~a~~ 277 (321)
T 2v5h_A 201 GQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLA 277 (321)
T ss_dssp SCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHH
T ss_pred CCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHHHHH
Confidence 333 35899999999999999999999999999999997 589999999988766 3679999999999999
Q ss_pred CCCC-EEEEEccCcchH-HHHHcCCccceEEEEe
Q psy13351 618 QKLP-IRVFSIIKSGAL-KRVIEGKNEGTLVYEI 649 (837)
Q Consensus 618 ~gi~-v~I~ng~~~~~i-~~al~Ge~~GT~I~~~ 649 (837)
+|++ ++|+||..|+.+ .+++.|+..||+|.++
T Consensus 278 ~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 278 QGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp TTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred cCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence 9998 999999999988 7889998899999875
|
| >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-27 Score=252.00 Aligned_cols=216 Identities=19% Similarity=0.201 Sum_probs=170.2
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc--cccCCCcchHHHHHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 493 (837)
++|+| .|+++. ++. .+.+.+++++|+.+. .|+++|||||||..++.+.. ...+++...++.+++.+...
T Consensus 41 ~iVIK---iGGsl~-~~~----~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~~~~~~~~~~~gl~~~~l~~v~~~~~~~ 111 (276)
T 2ogx_A 41 LQVVK---IGGRVM-DRG----ADAILPLVEELRKLL-PEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQ 111 (276)
T ss_dssp EEEEE---ECHHHH-TTT----HHHHHHHHHHHHHHT-TTCEEEEEECCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eEEEE---EChhhc-CCC----HHHHHHHHHHHHHHh-CCCeEEEEECcHHHHHHHHhccCcCCCCHHHHHHHHHHHHHH
Confidence 67899 455544 322 678999999999998 79999999999865554333 23456667778888776666
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCC----------CCCCcchHHHHHHHHHc
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG----------NPFFTTDTTAALRAAEI 563 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G----------~~~~s~D~lAa~lA~~L 563 (837)
+..+++..+...|++.+.+ ..+.+.+..+|+.|.|||++|+.+ .+++++|++|+++|.+|
T Consensus 112 n~~l~~~ll~~~g~~~v~~----------~~~~~~i~~lL~~g~IpVi~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l 181 (276)
T 2ogx_A 112 NGHILAAMLASEGVSYVEH----------PTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAF 181 (276)
T ss_dssp HHHHHHHHHGGGTCCBCCH----------HHHHHHHHHHHHHSSEEEEESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccc----------cChHHHHHHHHhCCCEEEEcCCcccccccccCCcCCCCChHHHHHHHHHHc
Confidence 6666666666888875432 124677899999999999999421 25678999999999999
Q ss_pred CCcEEEEeeccCccccCCCC--CCCCceeccccCHHHHHHh-ccccchHHHHHHHH--hCCCCEEEEEccCcchHHHHHc
Q psy13351 564 KAEIILKATKVDGIYNSDPN--KCLSAIIYKKITFDEVISK-KLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIE 638 (837)
Q Consensus 564 ~Ad~liilTDVdGVy~~dP~--~~~~a~~I~~is~~e~~~~-G~~v~~~~Aa~~a~--~~gi~v~I~ng~~~~~i~~al~ 638 (837)
+||+|+++|||||||++||+ .+|++++|++++++|+.+. |..++++.+...+. +.|++++|+||..|+++.+++.
T Consensus 182 ~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~ 261 (276)
T 2ogx_A 182 GAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALR 261 (276)
T ss_dssp TCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSCSCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHT
T ss_pred CCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHhCcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHc
Confidence 99999999999999999998 8899999999999998874 34445555555555 6688999999999999999999
Q ss_pred CCccceEEEEee
Q psy13351 639 GKNEGTLVYEIY 650 (837)
Q Consensus 639 Ge~~GT~I~~~~ 650 (837)
|+.+||+|.+++
T Consensus 262 g~~~GT~i~~~~ 273 (276)
T 2ogx_A 262 GEHVGTLIRTGV 273 (276)
T ss_dssp TCCCSEEEECSC
T ss_pred CCCCceEEccCC
Confidence 999999998753
|
| >3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-27 Score=206.69 Aligned_cols=112 Identities=38% Similarity=0.586 Sum_probs=107.8
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++|.++++.+|+++++.|+.+++++||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 31 (121)
T 3lf9_A 2 INEIKKDAQERMDKSVEALKNNLSKVRTGG-------------------------------------------------- 31 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSS--------------------------------------------------
T ss_pred chHHHhhHHHHHHHHHHHHHHhhHhhcCCC--------------------------------------------------
Confidence 467888999999999999999999999985
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|||+|||++|+|.|++++|++|++||||||++++.+|++.|++.+|||+.++++++||
T Consensus 32 ----------------------plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQ 89 (121)
T 3lf9_A 32 ----------------------GGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQ 89 (121)
T ss_dssp ----------------------BCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHH
T ss_pred ----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|+++||++++.||||||.|
T Consensus 90 KLTDkyIkkID~ll~~KEKEI~~~ 113 (121)
T 3lf9_A 90 KLTDVAVKKIDEVLAAKEKELMEV 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986
|
| >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-27 Score=257.01 Aligned_cols=244 Identities=11% Similarity=0.099 Sum_probs=176.5
Q ss_pred hhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhccC-CCccccccchhhhhhhhHHhhhcCc-eEEEEeCcchh
Q psy13351 390 MHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGI-ELAIVIGGGNI 467 (837)
Q Consensus 390 mhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~g-~~~~i~~~~i~~la~~I~~l~~~G~-~vVIVhGGG~~ 467 (837)
-|-.+.-|+|+.+ .++++|+|+ +|+++... .+..++.+.+++++++|+.+.+.|+ ++|||||||..
T Consensus 9 ~~~~~~~~~~~~~----------~~~~iVIKl--GGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~ 76 (286)
T 3d40_A 9 HHSSGLVPRGSHM----------TPDFLAIKV--GGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAF 76 (286)
T ss_dssp ---CCCCCCSTTS----------CCSEEEEEE--CGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC
T ss_pred ccccccchhhhcc----------CCCEEEEEe--CchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHH
Confidence 3556666777774 234679995 55554432 2567899999999999999999998 69999999976
Q ss_pred hhcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhh---hhhccchHHHHHHHhCCCEEEEeCC
Q psy13351 468 CRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEK---FLESYIPLNAIKYLEEGKVVIFAGG 544 (837)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~---~~~~~~~~~i~~ll~~g~VPVv~G~ 544 (837)
.+.+.... +.++...+....+..+.....+..+|..+|++++.+++.+... -...++.+.+..+|+.|.|||++|+
T Consensus 77 ~~~~l~~~-~~~~~~~~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~dg~~~~~~~~i~~lL~~g~IpVi~gd 155 (286)
T 3d40_A 77 GHGAIRDH-DSTHAFSLAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRDVLDHGALPVLAGD 155 (286)
T ss_dssp -------------CCTTHHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEECCSHHHHHHHTTCEEEEECE
T ss_pred HHHHHHHc-CCCcccchhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccCCeEEehHHHHHHHHHCcCEEEEcCC
Confidence 66543321 2211111112222334445677888999999999887765421 0344567789999999999999983
Q ss_pred CC-----C-CCCcchHHHHHHHHH-cCCcEEEEeeccCccccCCCCCCCCceeccccCHHH---HHH----------hcc
Q psy13351 545 IG-----N-PFFTTDTTAALRAAE-IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE---VIS----------KKL 604 (837)
Q Consensus 545 ~G-----~-~~~s~D~lAa~lA~~-L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e---~~~----------~G~ 604 (837)
.+ . .++++|++|+++|.+ |+||+|+|+|||||||++||+ ++++|+++++.| +.+ .|+
T Consensus 156 ~~~~~~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tgg 232 (286)
T 3d40_A 156 ALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGA 232 (286)
T ss_dssp EEEBTTSCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CH
T ss_pred eEEcCCCCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCc
Confidence 32 1 236799999999999 999999999999999999998 899999998754 322 278
Q ss_pred ccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcC-----Ccc-ceEEEEe
Q psy13351 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEG-----KNE-GTLVYEI 649 (837)
Q Consensus 605 ~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~G-----e~~-GT~I~~~ 649 (837)
|.+|+.|+..|.++|++++|+||..|+++.+++.+ +++ ||.|...
T Consensus 233 M~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t~~~~~~~~~~~t~i~~~ 283 (286)
T 3d40_A 233 MHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTT 283 (286)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGSCGGGSCTTCCCEEEEC-
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhcCcccCcccccceeeeec
Confidence 88999999999999999999999999999999999 886 9999753
|
| >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=244.62 Aligned_cols=214 Identities=21% Similarity=0.272 Sum_probs=167.2
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc--cccCCCcchHHHHHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+|+|+ +|++ +.++. .+.+.+++++|+.+.+. +++|||||||..++.+.. ...+++...++...+.+.++
T Consensus 38 ~iVIKl--GGs~-l~~~~----~~~~~~la~~I~~l~~~-~~vVlVhGGg~~~~~~~~~~~~~g~~~~~~~~~~~~a~G~ 109 (270)
T 2ogx_B 38 ATVIKI--GGQS-VIDRG----RAAVYPLVDEIVAARKN-HKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQ 109 (270)
T ss_dssp EEEEEE--CTTT-TGGGC----HHHHHHHHHHHHHHTTT-CEEEEEECCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEe--chHH-hCCCC----HHHHHHHHHHHHHHhcC-CcEEEEECChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 568884 4444 33321 57899999999999876 999999999976544322 12355666677888888888
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCC------------CCCCcchHHHHHHHH
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG------------NPFFTTDTTAALRAA 561 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G------------~~~~s~D~lAa~lA~ 561 (837)
++.++...|..+|++.+ ...+...+..+++.|.|||++|+.| ++++++|++|+++|.
T Consensus 110 ~~l~~~~~l~~~G~~~v-----------t~~d~~~i~~lL~~g~ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~ 178 (270)
T 2ogx_B 110 NAAMLGQLLAKHGIPVV-----------GGAGLSAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAE 178 (270)
T ss_dssp HHHHHHHHHGGGTCCBC-----------CSSTTCHHHHHCTTCCEEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcee-----------cHhhHHHHHHHHhCCCEEEEeCCccccccccccccccCCCCCcHHHHHHHHH
Confidence 88888777888888721 2234456899999999999998643 345789999999999
Q ss_pred HcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHHh--ccccchHHHHHHHHh--CCCCEEEEEccCcchHHHHH
Q psy13351 562 EIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK--KLEIMDSTAFSFCRD--QKLPIRVFSIIKSGALKRVI 637 (837)
Q Consensus 562 ~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~~--G~~v~~~~Aa~~a~~--~gi~v~I~ng~~~~~i~~al 637 (837)
+|+||+|+++|||||||++||+.+|++++|++++++|+.+. ++.+++..+...+.. .+++++|+|+..|+++.+++
T Consensus 179 ~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l 258 (270)
T 2ogx_B 179 QFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRAL 258 (270)
T ss_dssp HHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCCTTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHH
T ss_pred hcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCCCcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHH
Confidence 99999999999999999999999999999999999988772 222444444433333 56799999999999999999
Q ss_pred cCCccceEEEE
Q psy13351 638 EGKNEGTLVYE 648 (837)
Q Consensus 638 ~Ge~~GT~I~~ 648 (837)
.|+.+||+|.+
T Consensus 259 ~g~~~GT~i~~ 269 (270)
T 2ogx_B 259 AGEHVGTIITA 269 (270)
T ss_dssp TTCCCSEEEEC
T ss_pred cCCCCCeEecC
Confidence 99999999975
|
| >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=248.51 Aligned_cols=220 Identities=20% Similarity=0.160 Sum_probs=176.6
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---cc-------cCCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KI-------QNIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~-------~~~~~~~~~ 484 (837)
+++|+|. +|+++ .+ ++.+.+++++|+.+.+.|+++|||||||+....... .. +..++.+++
T Consensus 22 ~~iViKl--GGs~l-~~------~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~~~~~~~~g~r~t~~~~l~ 92 (282)
T 2bty_A 22 KTFVIKF--GGSAM-KQ------ENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTME 92 (282)
T ss_dssp CEEEEEE--CSHHH-HS------HHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCBSSSSBCBCHHHHH
T ss_pred CeEEEEE--Cchhh-CC------hhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCCccccCCcccCCHHHHH
Confidence 4578884 44443 22 457889999999999999999999999854432211 11 112467788
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh----------------hhccchHHHHHHHhCCCEEEEeCC----
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF----------------LESYIPLNAIKYLEEGKVVIFAGG---- 544 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~----------------~~~~~~~~i~~ll~~g~VPVv~G~---- 544 (837)
.++++++|..+..++..|..+|++++++++.+...+ +..++.+.+..+|+.|.|||++|+
T Consensus 93 ~~~~~~~G~~~~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~v~~~~ 172 (282)
T 2bty_A 93 IVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGE 172 (282)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESEEECS
T ss_pred HHHHHHhhHHHHHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECCCccCC
Confidence 888888777778899999999999999988754211 224578899999999999999983
Q ss_pred CCCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHH
Q psy13351 545 IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCR 616 (837)
Q Consensus 545 ~G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~ 616 (837)
.|.. ++++|++|+++|.+|+||+|+++|||||||++ | ++|++++++|+.+ .|+|.+|+.|+..|.
T Consensus 173 ~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-----~--~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a~ 245 (282)
T 2bty_A 173 DGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD-----G--KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAV 245 (282)
T ss_dssp SSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET-----T--EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHH
T ss_pred CCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC-----c--hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 2322 25899999999999999999999999999997 3 8999999998866 366999999999999
Q ss_pred hCCCC-EEEEEccCcchH-HHHHcCCccceEEEEee
Q psy13351 617 DQKLP-IRVFSIIKSGAL-KRVIEGKNEGTLVYEIY 650 (837)
Q Consensus 617 ~~gi~-v~I~ng~~~~~i-~~al~Ge~~GT~I~~~~ 650 (837)
++|++ ++|+||..|+.+ .+++.|+..||+|.++|
T Consensus 246 ~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~~ 281 (282)
T 2bty_A 246 RGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKELE 281 (282)
T ss_dssp HTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCCC
T ss_pred HhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeCC
Confidence 99998 999999999998 78888988999998753
|
| >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-27 Score=248.31 Aligned_cols=222 Identities=21% Similarity=0.193 Sum_probs=166.8
Q ss_pred HHHHHhhhhhhhccC--CCccccccchhhhhhhhHHhhhcC------ceEEEEeCcchhhhcccccccCCCcc---hHHH
Q psy13351 417 AVLKAQQLGEALMKG--DAYNINSSIIKNIISEISEIVSCG------IELAIVIGGGNICRGISNKIQNIDRS---TADY 485 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g--~~~~i~~~~i~~la~~I~~l~~~G------~~vVIVhGGG~~~~~~~~~~~~~~~~---~~~~ 485 (837)
+|+| .|++.+++ .+..++++.+++++++|+.+...| .++|||||||+.+.++.... ++++. +.+.
T Consensus 9 iVIK---lGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~~~~~l-gi~~~~~~~~~~ 84 (266)
T 3k4o_A 9 TILK---LGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKY-LKIEDGKKIFIN 84 (266)
T ss_dssp EEEE---ECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHGGG-EEECSSSEEECC
T ss_pred EEEE---EchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHHHHHHHHHc-CCCcccCccccc
Confidence 4778 45555554 367899999999999999998888 99999999997766532221 22111 0110
Q ss_pred --HHHHHHH----HHHHHHHHHHHHcCCceeEeehhchhhhh--hccchHHHHHHHhCCCEEEEeCCCC------CCCCc
Q psy13351 486 --MGMLATI----INSLALFDILNKSGIISHVMSAISIEKFL--ESYIPLNAIKYLEEGKVVIFAGGIG------NPFFT 551 (837)
Q Consensus 486 --~~~~~~~----~~~~ll~~~L~~~gi~a~~l~~~~~~~~~--~~~~~~~i~~ll~~g~VPVv~G~~G------~~~~s 551 (837)
.++..+. ..+..++++|..+|++++++++.++.... ..++.+.+..+|+.|.|||++|+.+ ..+++
T Consensus 85 ~~~G~r~T~~a~~~ln~~l~~~l~~~G~~a~~l~~~d~~~~~~g~~v~~~~i~~lL~~g~ipVi~~~~~~~~~g~~~~~~ 164 (266)
T 3k4o_A 85 MEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIIS 164 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEECGGGTCEESSSCBCCCHHHHHHHHTTCEEEEECEEEEESSSCEEEEC
T ss_pred ccCceeHHHHHHHHHHHHHHHHHHHCCCcEEEeeHHHcCcccCceEecHHHHHHHHHCCCEEEEeCCEEEcCCCCeeeeC
Confidence 2222222 23344788899999999999998875333 5678899999999999999998322 23467
Q ss_pred chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH----------hccccchHHHHHHHHhCCCC
Q psy13351 552 TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 552 ~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~----------~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+|++|+++|.+|+||+|+++||||||| .||+..|++.. -.++++.+ .|+|.+|+.|+..+.+ +
T Consensus 165 ~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~i~~~~~---~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~---~ 237 (266)
T 3k4o_A 165 GDDIVPYLANELKADLILYATDVDGVL-IDNKPIKRIDK---NNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC---R 237 (266)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESSSSSB-SSSSBCSEECT---TTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC---E
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCeEE-eCCeecCcCCH---HHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc---C
Confidence 999999999999999999999999999 88876554432 11233322 4679999999877766 9
Q ss_pred EEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++|+||+.|+.|.+++.|+.+||+|.|.
T Consensus 238 v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 238 GFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp EEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred EEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 9999999999999999999999999874
|
| >2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-26 Score=247.65 Aligned_cols=226 Identities=17% Similarity=0.152 Sum_probs=173.2
Q ss_pred HHHHHHHhhhhhhhcc-CCCcc--ccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---ccC-CCcchHHHHH
Q psy13351 415 SLAVLKAQQLGEALMK-GDAYN--INSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQN-IDRSTADYMG 487 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~-g~~~~--i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~~~-~~~~~~~~~~ 487 (837)
+++|+|+ +|+++.. +.+.. .+.+.+++++++|+.+.+.|+++|||||||.....+... ... .++.+++..+
T Consensus 5 ~~iVIKl--GGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~~~~~t~~~~l~~~~ 82 (316)
T 2e9y_A 5 RLAVIAL--GGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPERPRQPLYIAT 82 (316)
T ss_dssp CEEEEEC--CHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHTSCTTSCCCCHHHHH
T ss_pred CEEEEEE--ChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCCCCCCCCHHHHHHHH
Confidence 3568884 4444431 22223 334789999999999999999999999998655432222 111 3567888888
Q ss_pred HHHHHHHH----HHHHHHHHHcCCce--------eEeehhchh---------h-------------h-------------
Q psy13351 488 MLATIINS----LALFDILNKSGIIS--------HVMSAISIE---------K-------------F------------- 520 (837)
Q Consensus 488 ~~~~~~~~----~ll~~~L~~~gi~a--------~~l~~~~~~---------~-------------~------------- 520 (837)
++++++.+ ..+...|...|+++ +.+++.+.. . .
T Consensus 83 ~~~~G~i~~~l~~~l~~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r 162 (316)
T 2e9y_A 83 AMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFR 162 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEE
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccce
Confidence 88877754 44556688899987 677766620 0 0
Q ss_pred --------hhccchHHHHHHHhCCCEEEEeCCCCCC--------------CCcchHHHHHHHHHcCCcEEEEeeccCccc
Q psy13351 521 --------LESYIPLNAIKYLEEGKVVIFAGGIGNP--------------FFTTDTTAALRAAEIKAEIILKATKVDGIY 578 (837)
Q Consensus 521 --------~~~~~~~~i~~ll~~g~VPVv~G~~G~~--------------~~s~D~lAa~lA~~L~Ad~liilTDVdGVy 578 (837)
+..++.+.+..+|+.|.|||++|+.|.| ++++|++|+++|.+|+||+|+|+|||||||
T Consensus 163 ~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~LiilTdVdGVy 242 (316)
T 2e9y_A 163 RVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVA 242 (316)
T ss_dssp EEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEEECTTSCEEECSCCCCHHHHHHHHHHHTTCSEEEEEESSSSCE
T ss_pred ecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCeeECCCCCeecceeeeCHHHHHHHHHHHcCCCEEEEEeCchHhh
Confidence 1114778899999999999999766543 137999999999999999999999999999
Q ss_pred cCCCCCCCCceeccccCHHHHHHh--------ccccchHHHHHHHHhCCC-CEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 579 NSDPNKCLSAIIYKKITFDEVISK--------KLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 579 ~~dP~~~~~a~~I~~is~~e~~~~--------G~~v~~~~Aa~~a~~~gi-~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
+ ||+ +|++++|++++++|+.+. |+|.+|+.||..+.++|+ +++|++ ++++.+++.| ..||+|.+
T Consensus 243 ~-dp~-~p~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 243 V-NYG-REGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp E-TTT-STTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHHHHTT-SSSEEEEC
T ss_pred C-CCC-CCCCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHHHHcC-CCCeEEec
Confidence 9 784 789999999999888662 789999999988888898 899987 5668899998 78999975
|
| >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-26 Score=248.02 Aligned_cols=222 Identities=15% Similarity=0.089 Sum_probs=169.5
Q ss_pred HHHHHHhhhhhhhccCCCccccc----cchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---ccc--CCCcchHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINS----SIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ--NIDRSTADYM 486 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~----~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~--~~~~~~~~~~ 486 (837)
++|+|+ +|++ +.+. ..+. +.+++++++|+.+.+.|+++|||||||.....+.. ... ..++.+++.+
T Consensus 4 ~iVIKl--GGs~-l~~~--~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~~~~~~~~~~~~~~l~~~ 78 (310)
T 2we5_A 4 KMVVAL--GGNA-ILSN--DASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTC 78 (310)
T ss_dssp EEEEEC--CGGG-GCCS--SCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTCSSSSCCCCHHHH
T ss_pred EEEEEE--ChHH-hcCC--CCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHHcCCCCCCCCCHHHHHHH
Confidence 467884 4444 4332 2332 78999999999999999999999999855443221 111 2366788999
Q ss_pred HHHHHHHHHHHHH----HHHHHcCCce------------------------eE--eehhchh------h-----------
Q psy13351 487 GMLATIINSLALF----DILNKSGIIS------------------------HV--MSAISIE------K----------- 519 (837)
Q Consensus 487 ~~~~~~~~~~ll~----~~L~~~gi~a------------------------~~--l~~~~~~------~----------- 519 (837)
.++++++.+..+. ..|...|++. ++ +++.+.. .
T Consensus 79 ~a~~~G~l~~~i~~al~~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~~t~~da~~l~~~~~~~~~~~~~~~~ 158 (310)
T 2we5_A 79 VAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWR 158 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEEECHHHHHHHHTTTCCEEECTTSCEE
T ss_pred HHHhhhHHHHHHHHHHHHHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEeccHHHHHHHHhccccccccCCccee
Confidence 8888888766555 4477777753 11 1222210 0
Q ss_pred -------hhhccchHHHHHHHhCCCEEEEeCCCCCCC-----------CcchHHHHHHHHHcCCcEEEEeeccCccccCC
Q psy13351 520 -------FLESYIPLNAIKYLEEGKVVIFAGGIGNPF-----------FTTDTTAALRAAEIKAEIILKATKVDGIYNSD 581 (837)
Q Consensus 520 -------~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~-----------~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~d 581 (837)
.+..++.+.+..+|++|.|||++|+.|.|. +++|++|+++|.+|+||+|+++|||||||+ |
T Consensus 159 ~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-d 237 (310)
T 2we5_A 159 KVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI-N 237 (310)
T ss_dssp EEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-S
T ss_pred eccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-C
Confidence 011157889999999999999998766443 669999999999999999999999999999 7
Q ss_pred CCCCCCceeccccCHHHHHHh--------ccccchHHHHHHHHhCCC--CEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 582 PNKCLSAIIYKKITFDEVISK--------KLEIMDSTAFSFCRDQKL--PIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 582 P~~~~~a~~I~~is~~e~~~~--------G~~v~~~~Aa~~a~~~gi--~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
| .+|++++|++++++|+.+. |+|.+|+.||..+.++|+ +++|++ ++++.+++.|+..||+|.
T Consensus 238 p-~~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 238 Y-GKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp T-TSTTCEECCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBCCSEEEE
T ss_pred C-CCCCCeECCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCCCCeEEe
Confidence 8 4789999999999888662 889999999999999898 899986 566888999988999996
|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=243.25 Aligned_cols=279 Identities=20% Similarity=0.264 Sum_probs=197.3
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCc-chh---hhccccc-ccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGG-GNI---CRGISNK-IQNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 511 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 511 (837)
+.+.+++++++|+.+.+.|+++|||||| |.. ....... ....++..++.+..++...+..+++.+|..+|+++++
T Consensus 15 ~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~ 94 (421)
T 3ab4_A 15 SAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQS 94 (421)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence 3578999999999998899999999985 432 2222111 1122344555555444455777899999999999999
Q ss_pred eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---C----C---cchHHHHHHHHHcCCcEEEEee
Q psy13351 512 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F----F---TTDTTAALRAAEIKAEIILKAT 572 (837)
Q Consensus 512 l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~---~----~---s~D~lAa~lA~~L~Ad~liilT 572 (837)
+++.+.... +...+.+.+..+|+.|.|||++|+.|.+ + + .+|++|+.+|.+|+||.|++||
T Consensus 95 l~~~~~~~~t~~~~~~~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~T 174 (421)
T 3ab4_A 95 FTGSQAGVLTTERHGNARIVDVTPGRVREALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYS 174 (421)
T ss_dssp CCCC-----------------CCHHHHHHHHHTTCEEEC------------------CCHHHHHHHHHHHHTCSEEEEEE
T ss_pred EehhhceEEeccCCCCeeechhhHHHHHHHHhCCCEEEEeCCcCcCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEE
Confidence 998776321 2234678899999999999999986532 1 2 4899999999999999999999
Q ss_pred ccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 573 KVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 573 DVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
||||||++||+.+|++++|++++++|+.+ .|.+++|+.|+++|.++|+|++|.|+++| ..||+|.++
T Consensus 175 DVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 175 DVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSN----------DPGTLIAGS 244 (421)
T ss_dssp SCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESSSC----------CCCEEECSC
T ss_pred CCCccCcCCCCCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCcCC----------CCCeEEEec
Confidence 99999999999999999999999999887 68999999999999999999999999886 479999763
Q ss_pred eehhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHH
Q psy13351 650 YIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSI 729 (837)
Q Consensus 650 ~~~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~ 729 (837)
.. . . . .....+..+.. .+++++|++.+ .|..+.....
T Consensus 245 ~~-------~----~-----------------~-~~~~~i~~i~~--------~~~~~~i~v~~------~~~~~g~~~~ 281 (421)
T 3ab4_A 245 ME-------D----I-----------------P-VEEAVLTGVAT--------DKSEAKVTVLG------ISDKPGEAAK 281 (421)
T ss_dssp GG-------G----S-----------------C-TTTCCCCEEEE--------ECSEEEEEEEE------EESSTTHHHH
T ss_pred Cc-------c----c-----------------c-cccCccceEEe--------eCCEEEEEEec------cCCcccHHHH
Confidence 10 0 0 0 00001222222 34566665553 2556888889
Q ss_pred HHHHHHhcCCCccce--e-----cC-CeeEEeCCCCCHHHHHHHHHH
Q psy13351 730 IKKAINEANLGLNPT--I-----QG-NIIYVSIPPLTKERREEIVKL 768 (837)
Q Consensus 730 I~kaI~~s~l~~~p~--~-----~~-~~i~v~iP~~T~E~R~~l~k~ 768 (837)
|.+++.+.++++.-. . +| ..|++.+|.-..+.-+++++.
T Consensus 282 If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~ 328 (421)
T 3ab4_A 282 VFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKK 328 (421)
T ss_dssp HHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHH
Confidence 999999998877643 2 12 479999987555544444443
|
| >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=241.80 Aligned_cols=220 Identities=15% Similarity=0.152 Sum_probs=176.0
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc---ccc-------cCCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS---NKI-------QNIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~---~~~-------~~~~~~~~~ 484 (837)
+++|+|+ |++.+. +++.+..++++|+.+.+.|+++|||||||+...... ... +-.++.+++
T Consensus 27 k~iVIKl---GGs~l~------~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g~rvt~~~~l~ 97 (300)
T 2buf_A 27 KTLVIKY---GGNAME------SEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMD 97 (300)
T ss_dssp CEEEEEE---CCTTTT------SSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBSSSSBCBCHHHHH
T ss_pred CeEEEEE---CchhhC------CchHHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccCCeecCCHHHHH
Confidence 4578884 333332 245788999999999999999999999985433221 111 112466788
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------------------------hhccchHHHHHHHhCCC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------------------LESYIPLNAIKYLEEGK 537 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------------------------~~~~~~~~i~~ll~~g~ 537 (837)
.++++++|..+..++..|..+|++++++++.+.... +..++.+.+..+|+.|.
T Consensus 98 ~~~~~~~G~~~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ 177 (300)
T 2buf_A 98 VVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDF 177 (300)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECHHHHHHHHHCCC
Confidence 899988888899999999999999999987643211 12457788999999999
Q ss_pred EEEEeC----CCCCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccc
Q psy13351 538 VVIFAG----GIGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLE 605 (837)
Q Consensus 538 VPVv~G----~~G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~ 605 (837)
|||+++ ..|.. ++++|++|+++|.+|+||.|+++|||||||++ ++++|++++++|+.+ .|+|
T Consensus 178 IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM 251 (300)
T 2buf_A 178 IPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGM 251 (300)
T ss_dssp EEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTH
T ss_pred EEEEcCceeCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCcc
Confidence 999995 22333 35899999999999999999999999999986 378999999988866 3678
Q ss_pred cchHHHHHHHHhCCCC-EEEEEccCcchH-HHHHcCCccceEEEEe
Q psy13351 606 IMDSTAFSFCRDQKLP-IRVFSIIKSGAL-KRVIEGKNEGTLVYEI 649 (837)
Q Consensus 606 v~~~~Aa~~a~~~gi~-v~I~ng~~~~~i-~~al~Ge~~GT~I~~~ 649 (837)
.+|+.|+..+.++|++ ++|+||..|+.+ .+++.|+..||+|.++
T Consensus 252 ~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 252 LPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred HHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence 8999999999999998 999999999987 7888898899999864
|
| >3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-26 Score=205.24 Aligned_cols=90 Identities=26% Similarity=0.376 Sum_probs=87.8
Q ss_pred ecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHH
Q psy13351 745 IQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEIN 824 (837)
Q Consensus 745 ~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id 824 (837)
.++++|||+|| |+|+|++|+|.|++++|++|++||||||++++.+|++.|++++|||+.++++++||+|||+|+++||
T Consensus 33 ~~~~~IRl~iP--TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKLTDkyIkkID 110 (123)
T 3lhp_S 33 KFKAAVRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIE 110 (123)
T ss_dssp HHHHHHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhc
Q psy13351 825 QLLINKEKEILT 836 (837)
Q Consensus 825 ~~~~~kekei~~ 836 (837)
++++.||||||+
T Consensus 111 ~ll~~KEKEIm~ 122 (123)
T 3lhp_S 111 AALADMEAWLTQ 122 (123)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999996
|
| >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=243.89 Aligned_cols=224 Identities=20% Similarity=0.202 Sum_probs=168.8
Q ss_pred HHHHHHhhhhhhhccCC----CccccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhccccccc--CCCcchHHH
Q psy13351 416 LAVLKAQQLGEALMKGD----AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ--NIDRSTADY 485 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~----~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~--~~~~~~~~~ 485 (837)
++|+|+ +|+ .+.++ ...++.+.+++++++|+.+++.|+++||||||| ..+.++..... ..++.+++.
T Consensus 4 ~iViK~--GGs-al~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~~~~~~~~~~l~~ 80 (314)
T 1e19_A 4 RVVIAL--GGN-ALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQATYGIPAQPMDV 80 (314)
T ss_dssp EEEEEC--CGG-GTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_pred EEEEEE--ChH-HhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCccccCCCChhHHHH
Confidence 467784 444 44422 234677899999999999999999999999998 33332211111 135677888
Q ss_pred HHHHHHHHHHH----HHHHHHHHcCCce--------eEeehhch---------hh-------------h-----------
Q psy13351 486 MGMLATIINSL----ALFDILNKSGIIS--------HVMSAISI---------EK-------------F----------- 520 (837)
Q Consensus 486 ~~~~~~~~~~~----ll~~~L~~~gi~a--------~~l~~~~~---------~~-------------~----------- 520 (837)
..++.+++.+. .+...|..+|+++ +.+++.+. +. .
T Consensus 81 ~~a~~~G~i~~~l~~~l~~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~ 160 (314)
T 1e19_A 81 AGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRG 160 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCcccccccccc
Confidence 88777775433 3446688999886 56665551 00 0
Q ss_pred ----------hhccchHHHHHHHhCCCEEEEeCCCCCCC-------------CcchHHHHHHHHHcCCcEEEEeeccCcc
Q psy13351 521 ----------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGI 577 (837)
Q Consensus 521 ----------~~~~~~~~i~~ll~~g~VPVv~G~~G~~~-------------~s~D~lAa~lA~~L~Ad~liilTDVdGV 577 (837)
+..++.+.+..+|++|.|||++||.|.|. +++|++|+++|.+|+||+|+++||||||
T Consensus 161 ~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGv 240 (314)
T 1e19_A 161 WRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA 240 (314)
T ss_dssp EEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred ccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeEECCCCcceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEE
Confidence 11246788999999999999998766552 4479999999999999999999999999
Q ss_pred ccCCCCCCCCceeccccCHHHHHHh--------ccccchHHHH-HHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 578 YNSDPNKCLSAIIYKKITFDEVISK--------KLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 578 y~~dP~~~~~a~~I~~is~~e~~~~--------G~~v~~~~Aa-~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|++|| +|++++|++++++|+.+. |+|.+|+.|+ +++.+.+++++|+++ +.+.+++.| ..||+|.+
T Consensus 241 y~~~p--~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 241 ALYYG--TEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp EETTT--STTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GGHHHHHTT-SSSEEEEC
T ss_pred ECCCC--CCCCeECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecH---HHHHHHHcC-CCCeEEcC
Confidence 99999 489999999999888762 7899999877 557778899999985 458889998 48999974
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=254.90 Aligned_cols=203 Identities=24% Similarity=0.258 Sum_probs=163.5
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCc-chhhhcccccc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI----QNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 511 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 511 (837)
+++.++++++.|+.+++.|++++||||| |.....+.... ...++..++.+..++...++.+++.+|+.+|+++++
T Consensus 15 ~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~ 94 (600)
T 3l76_A 15 TVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISPNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAIS 94 (600)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEE
Confidence 4589999999999999999999999999 85544333221 112223333333333335788889999999999999
Q ss_pred eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC-----CCc------chHHHHHHHHHcCCcEEEEe
Q psy13351 512 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP-----FFT------TDTTAALRAAEIKAEIILKA 571 (837)
Q Consensus 512 l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~-----~~s------~D~lAa~lA~~L~Ad~liil 571 (837)
+++.+.... +...+++.+..+|+.|.|||++|+.|.+ .++ +|++|+++|.+|+||.|++|
T Consensus 95 l~~~~~~l~~~~~~~~~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~ 174 (600)
T 3l76_A 95 LTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIY 174 (600)
T ss_dssp EEGGGTEEEEC-------CCEEEECCHHHHHTTTCEEEEECEEEC----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEE
T ss_pred echhHcceEEecCCCCceeccccHHHHHHHHhCCCEEEEECCeecCCCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEE
Confidence 999886322 2233457899999999999999976632 233 69999999999999999999
Q ss_pred eccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 572 TKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 572 TDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|||||||++||+.+|+|++|++++++|+.+ .|..++++.|+++|.++|+|++|.|++++ ..||+|.+
T Consensus 175 TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~~~~----------~~GT~I~~ 244 (600)
T 3l76_A 175 TDVPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD----------EPGTKVVA 244 (600)
T ss_dssp ESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEETTCC----------SCCEEEEC
T ss_pred ECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEECCCC----------CCCeEEec
Confidence 999999999999999999999999999988 78899999999999999999999999874 47999986
Q ss_pred e
Q psy13351 649 I 649 (837)
Q Consensus 649 ~ 649 (837)
+
T Consensus 245 ~ 245 (600)
T 3l76_A 245 P 245 (600)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-25 Score=211.22 Aligned_cols=97 Identities=39% Similarity=0.654 Sum_probs=89.4
Q ss_pred cCCCeeEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCCh--h-----------------------
Q psy13351 267 AKDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINL--D----------------------- 319 (837)
Q Consensus 267 ~~eG~i~~y~~--~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~--~----------------------- 319 (837)
|+||+|++|+| |++|||||+||||||||||+.|++|+++||||+||++|.++ +
T Consensus 1 a~EG~v~~yiH~~gkigvlVeln~eTDFVArne~F~~la~~iAm~iaA~~p~~v~~e~vp~~~~e~E~~i~~~~~~~~gK 80 (145)
T 1tfe_A 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGK 80 (145)
T ss_dssp CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCcEEEEEEecCCCEEEEEEEecCCcccccchHHHHHHHHHHHHHHHcCCcccchhhCCHHHHHHHHHHHHHHHHhcCC
Confidence 57999999999 89999999999999999999999999999999999999887 3
Q ss_pred ---------------------hhhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeEE
Q psy13351 320 ---------------------QLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI 363 (837)
Q Consensus 320 ---------------------~l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i~ 363 (837)
-++|+|++|++.||+|++++.++++||||+|+||.||++|+|++
T Consensus 81 Pe~i~ekiv~Grl~Kf~~e~~Ll~Q~fv~d~~~tV~~~l~~~~~~iGeni~v~rf~r~~vGegi~ 145 (145)
T 1tfe_A 81 PQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGAMMC 145 (145)
T ss_dssp CHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccCCCccHHHHHHHHHHhhCCCeEEEEEEEEEeCCCCC
Confidence 26799999999999999999999999999999999999999874
|
| >3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-24 Score=227.95 Aligned_cols=226 Identities=15% Similarity=0.134 Sum_probs=169.4
Q ss_pred HHHHHHhhhhhhhcc-CCC--ccccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhcccccccCCCcchHHHHHH
Q psy13351 416 LAVLKAQQLGEALMK-GDA--YNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGM 488 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~-g~~--~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~ 488 (837)
++++++ +|.++.. |.+ .....+.++..|++|+++.+.|++++|+||+| +..++........++.+++.+.+
T Consensus 7 ~ivval--gGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~~~~~~~pld~~~A 84 (317)
T 3kzf_A 7 TVVIAL--GGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGA 84 (317)
T ss_dssp EEEEEC--CSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTTSSSCCCCHHHHHH
T ss_pred EEEEEc--ChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCccccCc
Confidence 456665 6667654 232 23455578999999999999999999999995 65554332222346788999999
Q ss_pred HHHHHHHHHHHHH----HHHcCCceeEeehhch-----------------h---------hh------------------
Q psy13351 489 LATIINSLALFDI----LNKSGIISHVMSAISI-----------------E---------KF------------------ 520 (837)
Q Consensus 489 ~~~~~~~~ll~~~----L~~~gi~a~~l~~~~~-----------------~---------~~------------------ 520 (837)
..+|+.+++|+.+ |...|++....+..+. + ..
T Consensus 85 ~sqG~igy~l~~al~~~l~~~g~~~~v~t~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~~ed~grg~R 164 (317)
T 3kzf_A 85 MSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWR 164 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEECC--------------------------CCC
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeEeecCCCCee
Confidence 9999988877444 6677765432222111 0 00
Q ss_pred --------hhccchHHHHHHHhCCCEEEEeCCCCCCC-------------CcchHHHHHHHHHcCCcEEEEeeccCcccc
Q psy13351 521 --------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIYN 579 (837)
Q Consensus 521 --------~~~~~~~~i~~ll~~g~VPVv~G~~G~~~-------------~s~D~lAa~lA~~L~Ad~liilTDVdGVy~ 579 (837)
...++.+.|..+|+.|.|||++||.|.|. +++|++|+++|.+|+||+|+|+|||||||+
T Consensus 165 rvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~ 244 (317)
T 3kzf_A 165 VVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI 244 (317)
T ss_dssp CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE
T ss_pred eecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC
Confidence 11235588999999999999998777653 239999999999999999999999999999
Q ss_pred CCCCCCCCceeccccCHHHHHH--------hccccchHHHHHHHH-hCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 580 SDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCR-DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 580 ~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~~a~-~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
||+ .|++++|++++.+|+.+ .|+|.+|+.|+..+. +.+.+++|+|+ +.+.+++.|+ .||+|.++
T Consensus 245 -dp~-~p~a~~I~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G~-~GT~I~~d 317 (317)
T 3kzf_A 245 -NYK-KPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNGK-CGTRIIKD 317 (317)
T ss_dssp -SSS-CSSCEECCEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTTS-SSEEEECC
T ss_pred -CCC-CCCCeECcCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCCC-CCeEEecC
Confidence 888 69999999999988765 378999999887764 46678999986 3577899998 89999874
|
| >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=218.66 Aligned_cols=203 Identities=17% Similarity=0.172 Sum_probs=153.2
Q ss_pred ccchhhhhhhhHHhhhcCc-eEEEEeCcchhhhcccc-------cccCC---CcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy13351 438 SSIIKNIISEISEIVSCGI-ELAIVIGGGNICRGISN-------KIQNI---DRSTADYMGMLATIINSLALFDILNKSG 506 (837)
Q Consensus 438 ~~~i~~la~~I~~l~~~G~-~vVIVhGGG~~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~ll~~~L~~~g 506 (837)
++.+++++++|+.+.+.|. ++|||||||.....+.. ...++ +...++...++..+..+..|.+.|..+|
T Consensus 17 ~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~~~~glr~t~~~~l~~~~~~l~~~~n~~l~~~l~~~G 96 (258)
T 1gs5_A 17 EEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQ 96 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcceeCCEeeCCHHHHHHHHHHHhccchHHHHHHHHHCC
Confidence 4778999999998877655 58999999955432221 11122 2233333334444444445556789999
Q ss_pred CceeEeehhchhhh--------------hhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHHHHHcCCcE
Q psy13351 507 IISHVMSAISIEKF--------------LESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAEI 567 (837)
Q Consensus 507 i~a~~l~~~~~~~~--------------~~~~~~~~i~~ll~~g~VPVv~G~----~G~~-~~s~D~lAa~lA~~L~Ad~ 567 (837)
++++++++.+.+.+ ...++++.+..+++.|.|||++|+ .|.. ++++|++|+.+|.+|+||
T Consensus 97 ~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~Aa~lA~~l~Ad- 175 (258)
T 1gs5_A 97 IAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGAD- 175 (258)
T ss_dssp CCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCE-
T ss_pred CCeEEEeecCCCEEEEEEcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCcCCCCCcEEEecHHHHHHHHHHHhCCc-
Confidence 99999998875311 235678899999999999999985 2222 456999999999999999
Q ss_pred EEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHH-HHHHhCCCCEEEEEccCcchHHHHHcC
Q psy13351 568 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEG 639 (837)
Q Consensus 568 liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa-~~a~~~gi~v~I~ng~~~~~i~~al~G 639 (837)
++++|||||||++| +++|++++++|+.+ .|+|.+++.++ +.+.+.+++++|+|+.+|+.+.+++.|
T Consensus 176 li~ltdV~Gv~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~ 249 (258)
T 1gs5_A 176 LILLSDVSGILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNG 249 (258)
T ss_dssp EEEEESSSSCBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTT
T ss_pred EEEEeCCCceECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcC
Confidence 99999999999875 57899999988866 35566666554 556677999999999999999999999
Q ss_pred CccceEEE
Q psy13351 640 KNEGTLVY 647 (837)
Q Consensus 640 e~~GT~I~ 647 (837)
+.+||+|.
T Consensus 250 ~~~GT~i~ 257 (258)
T 1gs5_A 250 MPMGTRIL 257 (258)
T ss_dssp CCSSEEEC
T ss_pred CCCcEEEe
Confidence 99999985
|
| >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-23 Score=237.27 Aligned_cols=219 Identities=14% Similarity=0.139 Sum_probs=166.0
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhc---cccccc----C---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRG---ISNKIQ----N---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~---~~~~~~----~---~~~~~~~ 484 (837)
+++|+|+ |++.+.. ++ +..++++|+.+.+.|+++|||||||..... ...... + .++.+++
T Consensus 44 ~~iViK~---GG~~l~~------~~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~l~ 113 (456)
T 3d2m_A 44 TTLVAGI---DGRLLEG------GT-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHYCRGLRVTDETSLG 113 (456)
T ss_dssp CEEEEEE---CGGGGTS------TH-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTTTCCCCCGGGCCCBCHHHHH
T ss_pred CEEEEEE---ChHHhcC------ch-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHCCCCCEeeCCeecCCHHHHH
Confidence 4578884 4444432 12 789999999999999999999999855322 222111 1 2456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCce----eEeehhchhh------------------hhhccchHHHHHHHhCCCEEEEe
Q psy13351 485 YMGMLATIINSLALFDILNKSGIIS----HVMSAISIEK------------------FLESYIPLNAIKYLEEGKVVIFA 542 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a----~~l~~~~~~~------------------~~~~~~~~~i~~ll~~g~VPVv~ 542 (837)
..++++ +..+..+.+.|. .|+++ +++++.+... .+..++.+.+..+|+.|.|||++
T Consensus 114 ~~~~~~-G~~~~~l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ipIi~ 191 (456)
T 3d2m_A 114 QAQQFA-GTVRSRFEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVWMP 191 (456)
T ss_dssp HHHHHH-HHHHHHHHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHHHHHHHTTCEEEEC
T ss_pred HHHHHH-hHHHHHHHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHHHHHHHCCCeEEEC
Confidence 776665 666777788888 88888 6666665321 12346788999999999999999
Q ss_pred CC----CCCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-----hccccchHHHH
Q psy13351 543 GG----IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAF 612 (837)
Q Consensus 543 G~----~G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-----~G~~v~~~~Aa 612 (837)
+. .|.. ++++|++|+.+|.+|+||.|+|+|||||||++ ++++|++++++|+.+ .|+|.+|+.||
T Consensus 192 ~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa 265 (456)
T 3d2m_A 192 PLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSA 265 (456)
T ss_dssp SEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHH
Confidence 62 2222 36799999999999999999999999999986 578999999988876 28899999999
Q ss_pred HHHHhCCCC-EEEEEccCcchH-HHHHcCCccceEEEEeee
Q psy13351 613 SFCRDQKLP-IRVFSIIKSGAL-KRVIEGKNEGTLVYEIYI 651 (837)
Q Consensus 613 ~~a~~~gi~-v~I~ng~~~~~i-~~al~Ge~~GT~I~~~~~ 651 (837)
..|.++|++ ++|+|+..|+++ ..++.|+..||+|.++..
T Consensus 266 ~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~~ 306 (456)
T 3d2m_A 266 VAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAF 306 (456)
T ss_dssp HHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCCC
T ss_pred HHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecccc
Confidence 999999995 999999999998 566788889999998743
|
| >4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-23 Score=223.33 Aligned_cols=225 Identities=17% Similarity=0.143 Sum_probs=160.7
Q ss_pred HHHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchh----hhc--cccc-ccCCCcchHHH
Q psy13351 413 EYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNI----CRG--ISNK-IQNIDRSTADY 485 (837)
Q Consensus 413 ek~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~----~~~--~~~~-~~~~~~~~~~~ 485 (837)
.-+|+|+|+ +|.++ .+ +.....+.++.+|++|+.|.+.|+++|||||||.. ... .... ....+..+++.
T Consensus 23 ~MkRIVIkl--GGnAL-~~-~~~~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~~~~~~~l~~ 98 (332)
T 4axs_A 23 HMSRIVIAL--GGNAL-GD-NPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAE 98 (332)
T ss_dssp ---CEEEEE--CGGGG-CS-SHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTSCCCCCCHHH
T ss_pred CcceEEEEE--Chhhc-CC-ChHHHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccCCCCCchhHH
Confidence 335689995 44554 32 22345678899999999999999999999999832 221 1111 22345667777
Q ss_pred HHHHHHHHHHHHHHHH----HHHcCCce--------eEeehhchh-----------------------------------
Q psy13351 486 MGMLATIINSLALFDI----LNKSGIIS--------HVMSAISIE----------------------------------- 518 (837)
Q Consensus 486 ~~~~~~~~~~~ll~~~----L~~~gi~a--------~~l~~~~~~----------------------------------- 518 (837)
+.++..+...+.|+.. |...|+.. +.+++.|..
T Consensus 99 ~~a~tqg~ig~~l~~~l~~~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~~~~~~~~g~ 178 (332)
T 4axs_A 99 AGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSVIVEDAGRGF 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCEEEEccCCCc
Confidence 7777777666555444 56666543 333333210
Q ss_pred -------hhhhccchHHHHHHHhCCCEEEEeCCCCCC-------------CCcchHHHHHHHHHcCCcEEEEeeccCccc
Q psy13351 519 -------KFLESYIPLNAIKYLEEGKVVIFAGGIGNP-------------FFTTDTTAALRAAEIKAEIILKATKVDGIY 578 (837)
Q Consensus 519 -------~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~-------------~~s~D~lAa~lA~~L~Ad~liilTDVdGVy 578 (837)
.....++.+.+..++++|+|||++|+.|.| ++.+|++|+.||.+|+||.|+|||||||||
T Consensus 179 rrvV~sp~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiLTdV~gv~ 258 (332)
T 4axs_A 179 RKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVY 258 (332)
T ss_dssp -CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEECSCSSCE
T ss_pred eEECCCCCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEEecCCceE
Confidence 001124567899999999999987754433 345999999999999999999999999999
Q ss_pred cCCCCCCCCceeccccCHHHHHH--------hccccchHHHHHHHHhCCC--CEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 579 NSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQKL--PIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 579 ~~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~~a~~~gi--~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
+++|+ |++++|++++.+|+.+ .|+|.+|+.||..+.+.|. .++|.+ ++.+.+++.|+ .||+|+
T Consensus 259 ~~~~~--~~~~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l~g~-~GT~Iv 331 (332)
T 4axs_A 259 VDFNK--PTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDALKGL-SGTKII 331 (332)
T ss_dssp ESTTS--TTCEECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHTTTS-SSEEEB
T ss_pred cCCCC--cchhhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHCCC-CCcEEe
Confidence 99886 7899999999988865 4789999999887777654 455543 55689999997 799996
|
| >3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-23 Score=221.23 Aligned_cols=204 Identities=17% Similarity=0.191 Sum_probs=158.9
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhh---hcccccccC-------CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNIC---RGISNKIQN-------IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~---~~~~~~~~~-------~~~~~~~ 484 (837)
+++|+| .|++.++. .+++++++|+.|++.|+++|||||||... +........ .++..++
T Consensus 37 k~iVIK---iGGs~l~~--------~~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg~~~~~~~G~Rvtd~~~l~ 105 (279)
T 3l86_A 37 DIIVIK---IGGVASQQ--------LSGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRVTSKDDMV 105 (279)
T ss_dssp CEEEEE---ECTTGGGS--------CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHH
T ss_pred ceEEEE---EChHHHHh--------HHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcCCCCccCCCcccCcHHHHH
Confidence 467889 45554433 26789999999999999999999997332 211221111 2445667
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------------hhccchHHHHHHHhCCCEEEEeC----CC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------LESYIPLNAIKYLEEGKVVIFAG----GI 545 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------------~~~~~~~~i~~ll~~g~VPVv~G----~~ 545 (837)
..+++.++..+..+.+.|..+|++++.+++.+.+.+ +..++.+.+..+|+.|.|||++| ..
T Consensus 106 ~v~~~l~G~ln~~i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~~v~~~~~ 185 (279)
T 3l86_A 106 LVSHALLDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKE 185 (279)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECHHHHHHHHHTTCEEEEESEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhHHHHHHHHhCCcEEEECCcEECCC
Confidence 777777777677789999999999999998876432 22357899999999999999998 11
Q ss_pred CCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHh
Q psy13351 546 GNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRD 617 (837)
Q Consensus 546 G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~ 617 (837)
|.. ++++|++|+.+|.+|+||+|+|+|||||||+ ++++|++++++|+.+ .|+|.+|+.|+..|.+
T Consensus 186 G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~ 258 (279)
T 3l86_A 186 GDMLNINADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVA 258 (279)
T ss_dssp SCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHH
T ss_pred CCEeecCHHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHH
Confidence 221 3479999999999999999999999999995 468899998877655 4899999999999999
Q ss_pred CCCC-EEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 618 QKLP-IRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 618 ~gi~-v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
+|++ ++|+|++. . ||+|+.
T Consensus 259 ~Gv~~v~I~~~~~-----------~-GT~i~~ 278 (279)
T 3l86_A 259 AGVGQVLIGDNLL-----------T-GTLITA 278 (279)
T ss_dssp TTCSEEEEESSSS-----------C-SEEEEC
T ss_pred cCCCEEEEeccCC-----------C-CeEEec
Confidence 9998 99999876 2 999974
|
| >3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-23 Score=221.63 Aligned_cols=201 Identities=15% Similarity=0.143 Sum_probs=156.6
Q ss_pred hhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---cc-------CCCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy13351 441 IKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ-------NIDRSTADYMGMLATIINSLALFDILNKSGIISH 510 (837)
Q Consensus 441 i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 510 (837)
+++++++|+.+...|.++|||||||+........ .. -.++.+++.+.++.. ..+..++..|.++|++++
T Consensus 64 ~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~~~~G~RvTd~~~l~vv~m~~~-~vn~~lv~~L~~~G~~Av 142 (307)
T 3zzh_A 64 LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFL-EQNLKLVTALEQLGVRAR 142 (307)
T ss_dssp HHHHHHHHHHHHHBTCCEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHHHHHHHHH-HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHcCCCccccCCeecCCHHHHHHHHHHHH-HHHHHHHHHHHhCCCCee
Confidence 7899999999999999999999999554433222 11 125677888887765 456777889999999999
Q ss_pred Eeehhch----------h--hhhhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 511 VMSAISI----------E--KFLESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 511 ~l~~~~~----------~--~~~~~~~~~~i~~ll~~g~VPVv~G~----~G~~-~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
++++.-+ + ..+..++++.+..+|+.|.|||++|. .|.. ++++|++|+.+|.+|+||+|+|+||
T Consensus 143 ~l~gg~~~a~~~~~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~~g~~~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTd 222 (307)
T 3zzh_A 143 PITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNE 222 (307)
T ss_dssp EECSSSEEEEESCHHHHBSBEEEEEECCHHHHHHHHHTCEEEECCCEECTTCBEEBCCHHHHHHHHHHHHCCSEEEEECS
T ss_pred EEcCCcEEEEecCccccCccccccccCHHHHHHHHHCCCEEEEeCCeECCCCcEEecCHHHHHHHHHHhCCCCEEEEEeC
Confidence 9986221 0 01345788999999999999999983 1221 3679999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHH-HHH-------hccccchHHHHHHHHhC---CCCEEEEEccCcchHH-HHHcCCc
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDE-VIS-------KKLEIMDSTAFSFCRDQ---KLPIRVFSIIKSGALK-RVIEGKN 641 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e-~~~-------~G~~v~~~~Aa~~a~~~---gi~v~I~ng~~~~~i~-~al~Ge~ 641 (837)
|||||++ |++++|++++..| +.+ .|+|.+|+.|++.|.+. |.+++|++ |+.+. .++.++.
T Consensus 223 V~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~---~~~ll~elft~~g 294 (307)
T 3zzh_A 223 KGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSG 294 (307)
T ss_dssp SCSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCTTCCEEEEC---GGGHHHHHHSCCC
T ss_pred CcceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhccCeEEEEeC---ccHHHHHHhcCCC
Confidence 9999986 5789999999865 332 58899999876666544 88899987 66764 5667888
Q ss_pred cceEEEEee
Q psy13351 642 EGTLVYEIY 650 (837)
Q Consensus 642 ~GT~I~~~~ 650 (837)
+||+|.+.+
T Consensus 295 ~GT~I~~~~ 303 (307)
T 3zzh_A 295 AGTMIRRGY 303 (307)
T ss_dssp CSEEEECCC
T ss_pred CcEEEecCC
Confidence 999998764
|
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-22 Score=227.12 Aligned_cols=267 Identities=18% Similarity=0.222 Sum_probs=178.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhh---------cc----chHHHHH-HHhCCCEEEEeCC
Q psy13351 479 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLE---------SY----IPLNAIK-YLEEGKVVIFAGG 544 (837)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~---------~~----~~~~i~~-ll~~g~VPVv~G~ 544 (837)
++...+.+.+.+...++.+++.+|..+|++++++++.+++.... .. ....+.. +++.|.|||++||
T Consensus 136 ~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf 215 (510)
T 2cdq_A 136 TLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGF 215 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCc
Confidence 34445666666666689999999999999999999998732210 11 1234443 6689999999998
Q ss_pred CCC-C---CCc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHH
Q psy13351 545 IGN-P---FFT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTA 611 (837)
Q Consensus 545 ~G~-~---~~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~A 611 (837)
.|. + .++ +|++|+++|.+|+||.+++||||||||++||+.+|+|++|++++++|+.+ +|.+++++.|
T Consensus 216 ~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a 295 (510)
T 2cdq_A 216 LGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQS 295 (510)
T ss_dssp EEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHH
T ss_pred cccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHH
Confidence 763 2 122 89999999999999999999999999999999999999999999999877 6899999999
Q ss_pred HHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEeee---hhh------hh--hhhhHHHhHHHHHHHHHHHHHhhh
Q psy13351 612 FSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI---MII------SD--IKKNTKQKMLNTIKILKENLKKVR 680 (837)
Q Consensus 612 a~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~---~v~------~~--i~~~~~~~m~~~i~~~~~~l~~ir 680 (837)
+++|.++|+|++|.|+++|+ ..||+|.++.. ..+ +. .+.-....|......+.+=|..+.
T Consensus 296 ~~~a~~~gIpv~I~n~~~p~---------~~GT~I~~~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la 366 (510)
T 2cdq_A 296 MRPAREGEIPVRVKNSYNPK---------APGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFE 366 (510)
T ss_dssp HHHHHHHTCCEEEEETTSTT---------SCCEEEESCCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEccCcCC---------CCCeEEeccccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHH
Confidence 99999999999999999884 57999987521 100 00 000001123322333333444444
Q ss_pred cCCCCcccc----ceeEEEeccccc---------------ccceeeeeeccCC-ceEEEecC---CcccHHHHHHHHHhc
Q psy13351 681 TGRANIGML----DNIQVKYHEHLT---------------KLLKIANITLFNS-HTISIQPF---EKEMSSIIKKAINEA 737 (837)
Q Consensus 681 tgr~~p~~l----d~i~V~~~g~~~---------------~L~~lA~v~~~~~-~~l~i~~~---d~~~~~~I~kaI~~s 737 (837)
.-..+.+++ .+|.+-.+.... .|.....|.+.+. ..+.|--. -+.....+.+|+.++
T Consensus 367 ~~~I~vd~I~sse~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~ 446 (510)
T 2cdq_A 367 ELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGNVQHSSLILERAFHVLYTK 446 (510)
T ss_dssp HTTCCEEEEEEETTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEEeCCCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEEEECCCChhHHHHHHHHHHHC
Confidence 455666666 334443332210 0222234444321 12222111 245567788889888
Q ss_pred CCCccceecC---CeeEEeC
Q psy13351 738 NLGLNPTIQG---NIIYVSI 754 (837)
Q Consensus 738 ~l~~~p~~~~---~~i~v~i 754 (837)
+.|+.-...| ..|.+.|
T Consensus 447 ~InI~mIsqGsSei~Is~vV 466 (510)
T 2cdq_A 447 GVNVQMISQGASKVNISFIV 466 (510)
T ss_dssp TCCCSEEEECTTCSEEEEEE
T ss_pred CCCEEEEEecCCcceEEEEE
Confidence 8887766654 3556555
|
| >4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-22 Score=223.16 Aligned_cols=215 Identities=16% Similarity=0.165 Sum_probs=164.0
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---cc----C---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ----N---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~~----~---~~~~~~~ 484 (837)
+.+|+|. |++.+.+ .+++++++|+.+...|.++|||||||......... .. + .++.+++
T Consensus 49 ~~iVIK~---GGsv~~~--------~l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~RvTd~~tl~ 117 (464)
T 4ab7_A 49 QFAVIKV---GGAIISD--------NLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMA 117 (464)
T ss_dssp CCEEEEE---CHHHHHH--------CHHHHHHHHHHHHHTTCCCEEEECCCHHHHHHHHHTTCCCCEETTEECBCHHHHH
T ss_pred ceEEEEE---CHHHhhc--------hHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccCCeecCCHHHHH
Confidence 4568884 4444432 26899999999999999999999999554433222 11 1 3667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhch----------h--hhhhccchHHHHHHHhCCCEEEEeCC----CCCC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISI----------E--KFLESYIPLNAIKYLEEGKVVIFAGG----IGNP 548 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~----------~--~~~~~~~~~~i~~ll~~g~VPVv~G~----~G~~ 548 (837)
.+.|+.. ..+..++..|.++|++++++++.-+ + ..+..++++.+..+|+.|.|||++|. .|..
T Consensus 118 vv~mv~~-~vn~~lv~~L~~~G~~Avglsgg~~~a~~~~~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~~g~~~~G~~ 196 (464)
T 4ab7_A 118 VVRKCFL-EQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQM 196 (464)
T ss_dssp HHHHHHH-HHHHHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSBEEEEEECCHHHHHHHHTTCEEEEESEEECTTCBE
T ss_pred HHHHHHH-HHHHHHHHHHHhCCCCeEEECCCcEEEEecCccccCCcCcccccCHHHHHHHHHCCcEEEEcCCcCCCCCCE
Confidence 8888765 4557788999999999999986221 0 01345788999999999999999983 2221
Q ss_pred -CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHH-HHH-------hccccchHHHHHHHHhC-
Q psy13351 549 -FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE-VIS-------KKLEIMDSTAFSFCRDQ- 618 (837)
Q Consensus 549 -~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e-~~~-------~G~~v~~~~Aa~~a~~~- 618 (837)
++++|++|+.+|.+|+||+|+++|||||||++ |++++|++++.+| +.. .|||.+|+.|++.|.+.
T Consensus 197 ~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v 271 (464)
T 4ab7_A 197 LNVNADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYL 271 (464)
T ss_dssp EECCHHHHHHHHHHHHCCSEEEEEESSCSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTS
T ss_pred EEecHHHHHHHHHHHcCCCEEEEEecccccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 36799999999999999999999999999986 4688999999865 332 47799999988777764
Q ss_pred --CCCEEEEEccCcchHH-HHHcCCccceEEEEe
Q psy13351 619 --KLPIRVFSIIKSGALK-RVIEGKNEGTLVYEI 649 (837)
Q Consensus 619 --gi~v~I~ng~~~~~i~-~al~Ge~~GT~I~~~ 649 (837)
|.+++|++ ++.+. .++.++.+||+|.++
T Consensus 272 ~~g~~v~I~~---~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 272 PRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp CTTCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred ccCcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence 78899987 45555 556788899999987
|
| >3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=221.43 Aligned_cols=203 Identities=14% Similarity=0.096 Sum_probs=159.7
Q ss_pred hhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---ccc----C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy13351 441 IKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH 510 (837)
Q Consensus 441 i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~----~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 510 (837)
+++++++|+.+...|.++|||||||+....... ... + .++..++.+.++.. ..+..|++.|.++|++++
T Consensus 74 l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~RvTd~~~l~vv~~~lg-~vn~~lv~aL~~~G~~Av 152 (460)
T 3s6g_A 74 LPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERVDGLRVTRDEAMPIIRDTLT-QANLALVDAIRDAGGRAA 152 (460)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHSCCCCCCSSSCCBCTTTHHHHHHHHH-HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHH-HHHHHHHHHHHhCCCCce
Confidence 699999999999999999999999854433221 111 1 36677888877764 556667779999999999
Q ss_pred Eeehhch--h----------hhhhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 511 VMSAISI--E----------KFLESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 511 ~l~~~~~--~----------~~~~~~~~~~i~~ll~~g~VPVv~G~----~G~~-~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
++++..+ . ..+..++.+.+..+|+.|.|||+++. .|.. ++++|++|+.+|.+|+||+|+++||
T Consensus 153 ~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p~g~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTd 232 (460)
T 3s6g_A 153 AVPRGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTG 232 (460)
T ss_dssp EECSSSEEEEESCTTTTBSEEEEEEECCHHHHHHHHTTCEEEEECEEECTTCCEEEECHHHHHHHHHHHHCCSEEEEECS
T ss_pred EEecCeEEEEEecCcccCccCcceEEcHHHHHHHHHCCcEEEEECceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeC
Confidence 9998332 1 01345788999999999999999962 1221 3569999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHH-HHHH-------hccccchHHHHHHHHhCCCCEEEEEccCcchHHH-HHcCCccce
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFD-EVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR-VIEGKNEGT 644 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~-e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~-al~Ge~~GT 644 (837)
|||||++ ++++|++++.. ++.. .|+|.+++.|+..|.+.+.+++++++..|+.+.. ++.++.+||
T Consensus 233 v~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT 306 (460)
T 3s6g_A 233 TGGLLDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGT 306 (460)
T ss_dssp SCSCBCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSE
T ss_pred CccccCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCce
Confidence 9999984 46789999875 5433 5889999999988888544789999999999875 667888999
Q ss_pred EEEEee
Q psy13351 645 LVYEIY 650 (837)
Q Consensus 645 ~I~~~~ 650 (837)
+|.+.+
T Consensus 307 ~i~~~e 312 (460)
T 3s6g_A 307 LIRRGE 312 (460)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999873
|
| >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-21 Score=217.54 Aligned_cols=263 Identities=17% Similarity=0.205 Sum_probs=172.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh------hhcc--c----h-HHHHHHHhCCCEEEEeCCCC-
Q psy13351 481 STADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF------LESY--I----P-LNAIKYLEEGKVVIFAGGIG- 546 (837)
Q Consensus 481 ~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~------~~~~--~----~-~~i~~ll~~g~VPVv~G~~G- 546 (837)
...+.+.+.+...++.+++.+|..+|++++++++.++-.. .... + . ..+..+++ +.|||++|+.|
T Consensus 109 ~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~IpVv~Gf~g~ 187 (449)
T 2j0w_A 109 ALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLN-EGLVITQGFIGS 187 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCTTSCCBCHHHHHHHHHHHTHHHHH-HSEEEEESSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCCCCCccccHhHhHHHHHHHHHHHhc-CCEEEEeCCeee
Confidence 4445555555666888999999999999999999887111 0111 0 1 23344444 45999999877
Q ss_pred CC-C-C---c---chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHH
Q psy13351 547 NP-F-F---T---TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFC 615 (837)
Q Consensus 547 ~~-~-~---s---~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a 615 (837)
++ + . . +|++|+++|.+|+||.+++||||||||++||+.+|++++|++++++|+.+ .|.+++++.|+++|
T Consensus 188 ~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a 267 (449)
T 2j0w_A 188 ENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPA 267 (449)
T ss_dssp CTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHH
T ss_pred CCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHH
Confidence 33 2 1 2 79999999999999999999999999999999999999999999999887 58899999999999
Q ss_pred HhCCCCEEEEEccCcchHHHHHcCCccceEEEEee--ehhh------hh--hhhhHHHhHHHHHHHHHHHHHhhhcCCCC
Q psy13351 616 RDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY--IMII------SD--IKKNTKQKMLNTIKILKENLKKVRTGRAN 685 (837)
Q Consensus 616 ~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~--~~v~------~~--i~~~~~~~m~~~i~~~~~~l~~irtgr~~ 685 (837)
.++|+|++|.|+++|+ .+||+|.++. ...+ +. .+.-....|......+.+=|..+..-..+
T Consensus 268 ~~~gi~v~I~~~~~p~---------~~GT~I~~~~~~~~~v~gIa~~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~ 338 (449)
T 2j0w_A 268 VRSDIPVFVGSSKDPR---------AGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNIS 338 (449)
T ss_dssp HHHTCCEEEEESSCTT---------SCCEEEESCCSSCCSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCC
T ss_pred HHCCCeEEEEECCCCC---------CCeeEEecccccccccccceeeCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCC
Confidence 9999999999999884 5799998752 1111 01 11111122444445555555666666777
Q ss_pred ccccc----eeEEEeccccc-------c-------cceeeeeeccCC-ceEEEecC----CcccHHHHHHHHHhcCCCcc
Q psy13351 686 IGMLD----NIQVKYHEHLT-------K-------LLKIANITLFNS-HTISIQPF----EKEMSSIIKKAINEANLGLN 742 (837)
Q Consensus 686 p~~ld----~i~V~~~g~~~-------~-------L~~lA~v~~~~~-~~l~i~~~----d~~~~~~I~kaI~~s~l~~~ 742 (837)
++++. ++.+-.+.... - |..+..|.+.++ ..+.|--. .+.....+.+|+. +.|+.
T Consensus 339 vd~i~ss~~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~--~ini~ 416 (449)
T 2j0w_A 339 VDLITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLE--PFNIR 416 (449)
T ss_dssp CSEEEEETTEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCT--TSCCC
T ss_pred EEEEEeCCCeEEEEEeccccchhhHHHHHHHHHHHhccCCeEEEeCCeEEEEEECCCccccccHHHHHHHHHh--CCCeE
Confidence 77773 24444333211 0 222344555422 22333222 2455666666663 34444
Q ss_pred ceecC---CeeEEeCC
Q psy13351 743 PTIQG---NIIYVSIP 755 (837)
Q Consensus 743 p~~~~---~~i~v~iP 755 (837)
-...| ..|.+.|+
T Consensus 417 mIsqg~Se~~Is~vV~ 432 (449)
T 2j0w_A 417 MICYGASSHNLCFLVP 432 (449)
T ss_dssp EEEESSCTTEEEEEEE
T ss_pred EEEecCCCcEEEEEEe
Confidence 44433 46666664
|
| >3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-21 Score=216.55 Aligned_cols=256 Identities=16% Similarity=0.177 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhh------hhhccchHHHHHHHhCCCEEEEeCCCCC-C--CCc--
Q psy13351 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEK------FLESYIPLNAIKYLEEGKVVIFAGGIGN-P--FFT-- 551 (837)
Q Consensus 483 ~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~------~~~~~~~~~i~~ll~~g~VPVv~G~~G~-~--~~s-- 551 (837)
.|.+...+..+++.+|+.+| ++.++++.++.. ....++.+.+..+++.|.|||++||.|. + .++
T Consensus 109 ~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~v~Vv~Gf~g~~~~g~~~tl 183 (446)
T 3tvi_A 109 SDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFDKSGCFDEKKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKTF 183 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBCC--CBCHHHHHHHHHHHTTTCSSEECCCSEEECTTSCEEEC
T ss_pred HHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeCCCCceehHhhHHHHHHHHhcCCeEEeeCceecCCCCCeEEE
Confidence 44444444444788888886 466666766532 2334466789999999999999998763 2 222
Q ss_pred ----chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEE
Q psy13351 552 ----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRV 624 (837)
Q Consensus 552 ----~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I 624 (837)
+|++|+++|.+|+||.+++||||||||++||+.+|+|++|++++++|+.+ .|.+++|+.|+++|.++|+|++|
T Consensus 184 ~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~i 263 (446)
T 3tvi_A 184 SRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPINI 263 (446)
T ss_dssp SSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEEE
T ss_pred ccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEEE
Confidence 89999999999999999999999999999999999999999999999988 68889999999999999999999
Q ss_pred EEccCcchHHHHHcCCccceEEEEeee---h--hh------hhh--hhhHHHhHHHHHHHHHHHHHhhhcCCCCccccc-
Q psy13351 625 FSIIKSGALKRVIEGKNEGTLVYEIYI---M--II------SDI--KKNTKQKMLNTIKILKENLKKVRTGRANIGMLD- 690 (837)
Q Consensus 625 ~ng~~~~~i~~al~Ge~~GT~I~~~~~---~--v~------~~i--~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld- 690 (837)
.|+++|+ ..||+|.++.. . .+ +.+ +.-....|......+.+=|..+..-..+++++.
T Consensus 264 ~~~~~p~---------~~GT~i~~~~~~~~~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~ 334 (446)
T 3tvi_A 264 KNTNKPS---------DPGTLILSDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPS 334 (446)
T ss_dssp EETTBTT---------SCCEEEECTTTSCCCTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCE
T ss_pred ecCCCCC---------CCCEEEecCCcccccCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEec
Confidence 9999884 57999997621 1 11 000 000011233333333444444445555655543
Q ss_pred ---eeEEEecccccc------c---------------ceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCccceec
Q psy13351 691 ---NIQVKYHEHLTK------L---------------LKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQ 746 (837)
Q Consensus 691 ---~i~V~~~g~~~~------L---------------~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~p~~~ 746 (837)
++.+-+...... + ..+|-|++.+..+- --|.....+.+|+.+.+.|+.-..+
T Consensus 335 ~~~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~----~~~Gvaarif~aLa~~~InI~mIsq 410 (446)
T 3tvi_A 335 GVDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMA----KTKGIANKIFTALSKENVNIRMIDQ 410 (446)
T ss_dssp ETTEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGS----SCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCcc----CChhHHHHHHHHHHHCCCCEEEEEe
Confidence 344433222111 1 12333333332211 1377888999999998888766553
Q ss_pred ---CCeeEEeCCC
Q psy13351 747 ---GNIIYVSIPP 756 (837)
Q Consensus 747 ---~~~i~v~iP~ 756 (837)
...|.+.|+.
T Consensus 411 gtSei~Is~vV~~ 423 (446)
T 3tvi_A 411 GSSEINVIVGVET 423 (446)
T ss_dssp CSCTTEEEEEEEG
T ss_pred cCCCceEEEEEcH
Confidence 3467776653
|
| >3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-21 Score=219.27 Aligned_cols=203 Identities=15% Similarity=0.144 Sum_probs=157.1
Q ss_pred hhhhhhhhHHhhhcCceEEEEeCcchhhhcc---ccccc----C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy13351 441 IKNIISEISEIVSCGIELAIVIGGGNICRGI---SNKIQ----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH 510 (837)
Q Consensus 441 i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~---~~~~~----~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 510 (837)
+++++++|+.+...|.++|||||||+..... ..... + .++..++.+.++.. ..+..|++.|.++|++++
T Consensus 77 l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~~gi~~~f~~G~RvTd~~~l~vv~~~~g-~vn~~Lv~aL~~~G~~Av 155 (467)
T 3s6k_A 77 LEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNGLRVTSPHALAIVRKVFQ-ASNLKLVEALQQNGARAT 155 (467)
T ss_dssp CHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHTTSCCCCCCSSSCCBCHHHHHHHHHHHH-HHHHHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHH-HHHHHHHHHHHhCCCCce
Confidence 6899999999999999999999999544332 22221 1 25566777777664 556667779999999999
Q ss_pred Eeehhch--h----------hhhhccchHHHHHHHhCCCEEEEeC--C--CCCC-CCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 511 VMSAISI--E----------KFLESYIPLNAIKYLEEGKVVIFAG--G--IGNP-FFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 511 ~l~~~~~--~----------~~~~~~~~~~i~~ll~~g~VPVv~G--~--~G~~-~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
++++..+ . ..+..++.+.+..+|+.|.|||+++ . .|.. ++++|++|+.+|.+|+||+|+++||
T Consensus 156 ~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pvg~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTd 235 (467)
T 3s6k_A 156 SITGGVFEAEYLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQILNVNADFAANELVQELQPYKIIFLTG 235 (467)
T ss_dssp CCCSSSBCCCBSCSSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSCCCCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCS
T ss_pred EEcCccEEEEeccCcccCccceEEEEcHHHHHHHHHCCCEEEEECceECCCCcEEecCHHHHHHHHHHhcCCCEEEEEec
Confidence 9988433 1 1144578899999999999999994 2 2222 4669999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHH-HHHH-------hccccchHHHHHHHHhCCCCEEEEEccCcchHHH-HHcCCccce
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFD-EVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR-VIEGKNEGT 644 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~-e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~-al~Ge~~GT 644 (837)
|||||++| +++|++++.. ++.. .|+|.+++.|+..|.+.+.+++++++..|+.+.. ++.++.+||
T Consensus 236 v~Gv~~~~------~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT 309 (467)
T 3s6k_A 236 TGGLLDAE------GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGT 309 (467)
T ss_dssp SCSCCCSS------CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSC
T ss_pred ccceeCCC------CCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcce
Confidence 99999853 5677777763 3322 5889999999998888555789999999999875 567888999
Q ss_pred EEEEee
Q psy13351 645 LVYEIY 650 (837)
Q Consensus 645 ~I~~~~ 650 (837)
+|.+.+
T Consensus 310 ~i~~~e 315 (467)
T 3s6k_A 310 LVRRGE 315 (467)
T ss_dssp CBCCCC
T ss_pred EEeCCC
Confidence 999873
|
| >2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-15 Score=117.88 Aligned_cols=55 Identities=29% Similarity=0.335 Sum_probs=52.0
Q ss_pred ccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCC
Q psy13351 216 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDG 270 (837)
Q Consensus 216 g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG 270 (837)
...|++||++||++|++||+||.++|||+++|++|||++|++++.+|++++++.|
T Consensus 10 ~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg~~~a~kKA~k~~~~~ 64 (64)
T 2cp9_A 10 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64 (64)
T ss_dssp CHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCCSSSCCCCCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHhccCCCC
Confidence 4578999999999999999999999999999999999999999999999998765
|
| >1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-13 Score=139.96 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhhh-hhhhhcccccC--CCeeEEEEe-------------CCEEEEEEEecCCchhccchHHHHHHHHHH
Q psy13351 244 LSKAEEILRIKLGK-KILNISNRNAK--DGVIAIYIS-------------EKVGSLVEINCETDFVAKNNEFIKFSKKIA 307 (837)
Q Consensus 244 ~~~A~~~Lr~~g~~-~a~kk~~r~~~--eG~i~~y~~-------------~~~g~iveln~etdfva~n~~f~~la~~ia 307 (837)
++.++..+--+=.. -.-+++.++.. +|.|++|+| ||+||||+++++.+. +.+.+++++||
T Consensus 140 v~d~i~~~ia~iGEni~lrR~~~~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~~----~~l~~~ak~iA 215 (291)
T 1xb2_B 140 LKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSELK----ANLADLGRRLG 215 (291)
T ss_dssp HHHHHHHHHHHHCSCEEEEEEEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSCG----GGCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCcc----chHHHHHHHHH
Confidence 77777666554222 22344444443 489999999 789999999986431 22457999999
Q ss_pred HHHHhcCCCChhh-------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeEE
Q psy13351 308 KLITENTPINLDQ-------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI 363 (837)
Q Consensus 308 ~~iaa~~p~~~~~-------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i~ 363 (837)
|||||++|.++++ |+|+|++|+++||+|++++ .+++|++|+||++|||+.
T Consensus 216 mHIaA~~P~~l~~~~v~~gf~~E~~Ll~Q~fv~D~~~tV~~~l~~------~~i~V~~F~RfevGEgie 278 (291)
T 1xb2_B 216 QHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSITLGQYVQP------HGVSVVDFVRFECGEGED 278 (291)
T ss_dssp HHHHHHCCSBCCCTTSCCCGGGCCBGGGSBCTTCTTSBHHHHHGG------GTCEEEEEEEEETTCC--
T ss_pred HHHHhcCCcccCHHHhhccchhheeeccCcccCCCCcCHHHHHHh------CCCEEEEEEEEEecCccc
Confidence 9999999998752 7899999999999999985 379999999999999864
|
| >1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-12 Score=123.35 Aligned_cols=74 Identities=35% Similarity=0.585 Sum_probs=62.2
Q ss_pred eEEEEeeC-CeEEEEEEecCC-C--------hhHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhcc
Q psy13351 361 NLISYLHD-NKIGVIVEYNGD-N--------ESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMK 430 (837)
Q Consensus 361 ~i~~Y~H~-~~~~~~v~~~~~-~--------~~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~ 430 (837)
.+++|+|+ ||+||||++++. + .+++++|||||||++|.++++++||++++++|++++..++. ..
T Consensus 5 ~v~~yiH~~gkigvlVeln~eTDFVArne~F~~la~~iAm~iaA~~p~~v~~e~vp~~~~e~E~~i~~~~~~------~~ 78 (145)
T 1tfe_A 5 IIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAAL------NE 78 (145)
T ss_dssp EEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHH------TT
T ss_pred EEEEEEecCCCEEEEEEEecCCcccccchHHHHHHHHHHHHHHHcCCcccchhhCCHHHHHHHHHHHHHHHH------hc
Confidence 48999996 699999999875 2 36899999999999999999999999999999999888753 34
Q ss_pred CCCccccccc
Q psy13351 431 GDAYNINSSI 440 (837)
Q Consensus 431 g~~~~i~~~~ 440 (837)
|+|..+-+++
T Consensus 79 gKPe~i~eki 88 (145)
T 1tfe_A 79 GKPQQIAEKI 88 (145)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7887554443
|
| >1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-11 Score=120.86 Aligned_cols=77 Identities=35% Similarity=0.565 Sum_probs=64.4
Q ss_pred CCeEEEEeeC-CeEEEEEEecCCC------h---hHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhh
Q psy13351 359 NNNLISYLHD-NKIGVIVEYNGDN------E---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEAL 428 (837)
Q Consensus 359 g~~i~~Y~H~-~~~~~~v~~~~~~------~---~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~ 428 (837)
.+-+++|+|. +++|+||++++.. + .++++|||||||++|.|+++++||++++++|++++..++.
T Consensus 57 EGlV~~~i~~~~~~gvlvEvNcETDFVArn~~F~~lakdiAMhiAA~~P~~l~~~~vp~~~ve~E~~i~~~~~~------ 130 (196)
T 1aip_C 57 EGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAAL------ 130 (196)
T ss_dssp CCEEEEEECTTSSEEEEEEEECSSHHHHTSHHHHHHHHHHHHHHHHHCCSBSSSTTSCHHHHHHHHHHHHHHHH------
T ss_pred CCeEEEEEecCCCEEEEEEEecCCccccCCHHHHHHHHHHHHHHHHhCCccCChhhCCHHHHHHHHHHHHHHHH------
Confidence 3459999996 6999999998754 3 5789999999999999999999999999999999888863
Q ss_pred ccCCCccccccch
Q psy13351 429 MKGDAYNINSSII 441 (837)
Q Consensus 429 ~~g~~~~i~~~~i 441 (837)
..|+|..+-++++
T Consensus 131 ~~gKPe~i~eKiv 143 (196)
T 1aip_C 131 NEGKPQQIAEKIA 143 (196)
T ss_dssp TTTCCHHHHHHHH
T ss_pred HcCCcHHHHHHHH
Confidence 3478876665553
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-09 Score=132.72 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=71.5
Q ss_pred hcccccCCCeeEEEEeC-CEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh--------------------
Q psy13351 262 ISNRNAKDGVIAIYISE-KVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ-------------------- 320 (837)
Q Consensus 262 k~~r~~~eG~i~~y~~~-~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~-------------------- 320 (837)
+..++. .|.|++|+|| ++||||++++. | .++|++|||||||++|.+++.
T Consensus 134 R~~~~~-~~~v~~Y~Hg~kigvlV~~~~~-~--------~~~ak~iAMhIaA~~P~~l~~~~vp~~~ve~E~~i~~~~a~ 203 (1289)
T 3avx_A 134 RVAALE-GDVLGSYQHGARIGVLVAAKGA-D--------EELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAM 203 (1289)
T ss_dssp EEEEEE-CSEEEEEEETTTEEEEEEEESC-C--------HHHHHHHHHHHHHHCCSBSSTTTSCTTHHHHHHHHHHHHHH
T ss_pred EEEEEE-CCEEEEEecCCeEEEEEEecCC-c--------HHHHHHHHHHHHhcCCeecchhhCCHHHHHHHHHHHHHHHH
Confidence 444444 3899999997 99999999974 2 168999999999999986443
Q ss_pred --------------------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeEE
Q psy13351 321 --------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI 363 (837)
Q Consensus 321 --------------------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i~ 363 (837)
++|+|++|+++||++++++. ++++++|.||++|+++.
T Consensus 204 ~~gKPe~i~eKiveGrl~Kf~~E~~Ll~Q~fv~d~~~TV~~llke~------~a~V~~FvRfEVGEGIE 266 (1289)
T 3avx_A 204 QSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGIE 266 (1289)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHTBSTTSBCTTSTTSBHHHHHHTT------TCEEEEEEEEETTTTCC
T ss_pred hcCCcHHHHHHHHHHHHHhhhhhhhccCCceeecCccCHHHHHHhc------CcEEEEeeeEecccccc
Confidence 68999999999999988753 68999999999998763
|
| >1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.009 Score=64.10 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=51.2
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--CcceEEccCCC-----------cchhhhhhhhhhch
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGND-----------DSAKSIALYTKGIV 210 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N~-----------~s~~si~~~~~~l~ 210 (837)
..-|++|+++...+ ..+++.|+..|.|||+|++...+| ...|++|+... +|..+..+++++|.
T Consensus 139 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~~~st~~~s~ta~~~vl~~L~ 218 (306)
T 1nri_A 139 SKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEILTGSSRLKSGTAQKMVLNMLT 218 (306)
T ss_dssp CTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSSTTCTTTHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccccCcccchhHHHHHHHHHHHH
Confidence 46788888865433 346688899999999998865443 23555554331 23344457777776
Q ss_pred hhhhcc---------------------cchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 211 DAFLDA---------------------KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 211 ~ai~~g---------------------~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
.++... |...-++..|+++..+|+++|.+++|++..|+-.+.
T Consensus 219 ~~~~~~~g~~~~~~m~~~~~~n~kl~~r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~ 281 (306)
T 1nri_A 219 TASMILLGKCYENLMVDVQASNEKLKARAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMIL 281 (306)
T ss_dssp HHHHHHTTSCBTTBCTTCCCCSHHHHHHHHHHHHHHSCCCC----------------------
T ss_pred HHHHHHccHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHHH
Confidence 655432 112334556899999999999999999999988764
|
| >1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0074 Score=43.85 Aligned_cols=32 Identities=34% Similarity=0.339 Sum_probs=28.5
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEIL 251 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~L 251 (837)
+.+|... |.+..+|++||..++||++.|++||
T Consensus 8 i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 8 IAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5566665 8999999999999999999999998
|
| >1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0092 Score=52.56 Aligned_cols=38 Identities=29% Similarity=0.262 Sum_probs=35.2
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
.|+.|.+.||++..+|+.||.++|||++.|++.|.+..
T Consensus 42 kVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 42 KVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 47888999999999999999999999999999999864
|
| >2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.018 Score=42.56 Aligned_cols=34 Identities=29% Similarity=0.156 Sum_probs=28.6
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
+.+|.. -|.+..+|++||..++||++.|++||-.
T Consensus 8 i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 8 VEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 344444 4889999999999999999999999964
|
| >1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.026 Score=44.42 Aligned_cols=29 Identities=7% Similarity=-0.044 Sum_probs=25.8
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
-|.....+++||+++|||+|.|.+||=..
T Consensus 29 MGFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 29 MGYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 37888999999999999999999999543
|
| >2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.052 Score=40.78 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=26.1
Q ss_pred hhhhhcccCC-ChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 219 VGELRSKTLA-PIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 219 v~~lr~~t~~-~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
+.+|+.. |. ....+.+||..++||++.|++||-
T Consensus 11 i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 11 LRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4555553 54 456789999999999999999995
|
| >1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=93.54 E-value=0.035 Score=42.35 Aligned_cols=33 Identities=21% Similarity=0.020 Sum_probs=28.0
Q ss_pred hhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 220 GELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 220 ~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+|-. -|.+..+|++||..++||++.|++||-.
T Consensus 13 ~~L~~-MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 13 TEIMS-MGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHH-TTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 33433 4889999999999999999999999965
|
| >2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.052 Score=42.09 Aligned_cols=35 Identities=26% Similarity=0.138 Sum_probs=29.0
Q ss_pred hhhhhcccCC-ChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLA-PIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~-~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
+.+|.. -|. +...|.+||..++||++.|++||-..
T Consensus 15 l~~L~~-MGF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 15 LEQLNS-MGFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 455555 366 88999999999999999999999763
|
| >2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.054 Score=43.93 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=27.9
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
+.+|+..-=.....+.+||..++||++.|++||-..
T Consensus 23 l~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 23 MECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 445555333456677999999999999999999874
|
| >2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B | Back alignment and structure |
|---|
Probab=93.19 E-value=0.064 Score=41.44 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=27.5
Q ss_pred hhhhhcccCC-ChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 219 VGELRSKTLA-PIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 219 v~~lr~~t~~-~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
+.+|.. -|. +...|.+||..++||++.|++||-
T Consensus 16 l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 16 LEQLSA-MGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445554 367 889999999999999999999994
|
| >1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.082 Score=42.56 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=29.5
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
+.+|-. -|++..+|++||..++||++.|++||-..
T Consensus 13 I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 13 LKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 333433 58899999999999999999999999875
|
| >1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=92.93 E-value=0.07 Score=42.14 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=27.7
Q ss_pred chhhhhcccCC-ChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 218 TVGELRSKTLA-PIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 218 ~v~~lr~~t~~-~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+.+|+.. |. ....+.+||..++||++.|++||-.
T Consensus 20 qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 20 QLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34556654 43 5667899999999999999999975
|
| >2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=92.78 E-value=0.077 Score=41.30 Aligned_cols=36 Identities=31% Similarity=0.217 Sum_probs=27.4
Q ss_pred hhhhhcccCCCh-HHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 219 VGELRSKTLAPI-MECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 219 v~~lr~~t~~~~-~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
+.+|+.. |..- ..+.+||..++||++.|++||-..+
T Consensus 13 l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 13 LEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4555553 5533 4579999999999999999998653
|
| >2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.061 Score=43.30 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=28.9
Q ss_pred hhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 220 GELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 220 ~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.+|-. -|.+..+|++||..++||++.|++||-..
T Consensus 14 ~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 14 TTIVS-MGFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp HHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34443 47899999999999999999999999875
|
| >2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=91.91 E-value=0.11 Score=41.90 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=28.8
Q ss_pred hhhhhcccCCChHHHHHHHHHhhc-cHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANG-KLSKAEEILRI 253 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~-d~~~A~~~Lr~ 253 (837)
+.+|-. -|.+..+|++||..++| |++.|++||-.
T Consensus 23 i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 23 LDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 444544 48999999999999998 99999999965
|
| >4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.1 Score=47.51 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=27.0
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
-|.+...+|+||..+|||+++|++||-..
T Consensus 86 MGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 86 MGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 57899999999999999999999999875
|
| >2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=91.64 E-value=0.13 Score=41.59 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=29.3
Q ss_pred hhhhhcccCCChHHHHHHHHHhhc-cHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANG-KLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~-d~~~A~~~Lr~~ 254 (837)
+.+|-. -|.+...|++||..++| |++.|++||-+.
T Consensus 13 v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 13 LEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp HHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 344444 58999999999999987 999999999875
|
| >1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=91.24 E-value=0.14 Score=41.32 Aligned_cols=35 Identities=23% Similarity=0.116 Sum_probs=29.2
Q ss_pred hhhhhcccCCChHHHHHHHHHh-hccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEA-NGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~-~~d~~~A~~~Lr~~ 254 (837)
+.+|-. -|.+...|++||..+ |||++.|++||-+.
T Consensus 13 v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 13 LESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp HHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 344443 588999999999999 79999999999875
|
| >1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=91.23 E-value=0.14 Score=42.36 Aligned_cols=28 Identities=29% Similarity=0.162 Sum_probs=26.1
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
-|++..++++||..++||++.|++||-.
T Consensus 39 MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 39 MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4789999999999999999999999975
|
| >1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=91.16 E-value=0.14 Score=42.40 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=27.9
Q ss_pred chhhhhcccCC-ChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 218 TVGELRSKTLA-PIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 218 ~v~~lr~~t~~-~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+.+|+.. |. ....+.+||..++||++.|++||-.
T Consensus 32 qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 32 ELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34556654 54 5678899999999999999999964
|
| >2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.05 E-value=1.7 Score=42.52 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=42.0
Q ss_pred CCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC-------CcceEEccCCCcchh--hhhhhhhhchhhh
Q psy13351 148 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP-------DGINYVIPGNDDSAK--SIALYTKGIVDAF 213 (837)
Q Consensus 148 ~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~-------~~i~ypIP~N~~s~~--si~~~~~~l~~ai 213 (837)
..-|++|+++...+. .+++.|+..|+|||+|++...+| ..+.+.+|.+..+.- +.-+++..|...+
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~~~~~~~~~~l~~~~~L~~~~ 186 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLI 186 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCCChhHHHHHHHHHHHHHHHHH
Confidence 466888888765443 36688899999999999875432 334556666655543 3344445454444
|
| >2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.69 E-value=0.17 Score=43.12 Aligned_cols=35 Identities=23% Similarity=0.104 Sum_probs=29.5
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
+.+|-. -|.+...|++||..++||++.|++||-+.
T Consensus 33 i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 33 LRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 334443 48999999999999999999999999875
|
| >2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.69 E-value=0.17 Score=42.07 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=29.6
Q ss_pred hhhhhcccCCChHHHHHHHHHhhc-cHHHHHHHHHHHh
Q psy13351 219 VGELRSKTLAPIMECKKALIEANG-KLSKAEEILRIKL 255 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~-d~~~A~~~Lr~~g 255 (837)
+.+|-. -|.+...|++||..++| |++.|++||-+..
T Consensus 13 v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 13 IIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp HHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 344444 48899999999999996 8999999998853
|
| >1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=90.47 E-value=0.18 Score=41.77 Aligned_cols=35 Identities=26% Similarity=0.159 Sum_probs=29.0
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
+.+|-. -|.+..+|++||..++||++.|++||-..
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 344443 48899999999999999999999999764
|
| >1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.12 Score=45.69 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=43.2
Q ss_pred cceEEccCCCcchhhhhhhhhhchhhhhcccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHH
Q psy13351 187 GINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEIL 251 (837)
Q Consensus 187 ~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~L 251 (837)
.-+|.|.|....... . ...-..-..+..+.++++++..++++||.++|||+-.|+-+|
T Consensus 44 ~~Ty~I~Ge~~~~d~-~------~e~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 44 QKTYQVTGKARERSL-E------AEMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp EEEEEEESCEEEEEE-E------EECCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CcEEEEEcCceeecc-c------ccCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 357888887544311 0 112334456788899999999999999999999999999877
|
| >1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=89.21 E-value=0.26 Score=41.72 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=26.9
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
-|++...+++||..++||++.|++||-..
T Consensus 39 MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 39 MGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 37899999999999999999999999875
|
| >2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.93 E-value=0.24 Score=37.23 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=24.0
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
-|.+...|++||..+| |++.|++||-.
T Consensus 19 MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 19 MGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 4788999999999995 99999999953
|
| >2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=88.83 E-value=0.28 Score=41.86 Aligned_cols=34 Identities=26% Similarity=0.165 Sum_probs=28.8
Q ss_pred hhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 220 GELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 220 ~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.+|-. -|.+...|++||..++||++.|++||-.+
T Consensus 26 ~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 26 KQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 33433 48899999999999999999999999875
|
| >2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A | Back alignment and structure |
|---|
Probab=87.92 E-value=0.38 Score=42.84 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=28.5
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.+.+|+..--.....+.+||..++||++.|++||-..
T Consensus 69 qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 69 QLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3455555333456789999999999999999999764
|
| >2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=87.48 E-value=0.53 Score=35.96 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=27.8
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
-|++..+..+||..++||+|-|-.+||+-.
T Consensus 19 lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 19 QGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 488999999999999999999999999864
|
| >2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A | Back alignment and structure |
|---|
Probab=86.92 E-value=0.61 Score=35.47 Aligned_cols=29 Identities=31% Similarity=0.202 Sum_probs=27.1
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
-|++..+..+||..++||++-|-.+|+|-
T Consensus 21 mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 21 EGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 58899999999999999999999999984
|
| >1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Probab=86.47 E-value=0.47 Score=40.39 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=28.1
Q ss_pred hhhhcccCCChHHHHHHHHHhh-ccHHHHHHHHHHH
Q psy13351 220 GELRSKTLAPIMECKKALIEAN-GKLSKAEEILRIK 254 (837)
Q Consensus 220 ~~lr~~t~~~~~~~k~al~~~~-~d~~~A~~~Lr~~ 254 (837)
.+|-. -|.+...|++||..++ ||++.|++||-..
T Consensus 34 ~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 34 AQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34443 4889999999999995 7999999999875
|
| >1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A | Back alignment and structure |
|---|
Probab=85.40 E-value=0.38 Score=36.18 Aligned_cols=27 Identities=15% Similarity=-0.013 Sum_probs=25.2
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
-|.+...|.+||..+++|.+.|.+||=
T Consensus 14 mGF~~~~a~~Al~a~~~n~e~A~~~Lf 40 (47)
T 1dv0_A 14 LGFPESLVIQAYFACEKNENLAANFLL 40 (47)
T ss_dssp TTCCHHHHHHHHTTTTSCHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 489999999999999999999999984
|
| >4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* | Back alignment and structure |
|---|
Probab=85.10 E-value=0.54 Score=42.72 Aligned_cols=30 Identities=10% Similarity=-0.060 Sum_probs=27.8
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
-|+|...|++||..+++|.++|++||-...
T Consensus 18 MGFp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 18 MGYSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp TTCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 589999999999999999999999998863
|
| >2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.39 E-value=0.71 Score=42.41 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=29.0
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
+.+|.. -|++...|++||..++||++.|.+||-.
T Consensus 82 v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 82 VAIITS-MGFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 444544 4889999999999999999999999965
|
| >1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A | Back alignment and structure |
|---|
Probab=82.45 E-value=10 Score=36.91 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=33.8
Q ss_pred CCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC--Cc---ceEEccCCCc
Q psy13351 148 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP--DG---INYVIPGNDD 197 (837)
Q Consensus 148 ~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~--~~---i~ypIP~N~~ 197 (837)
..-|++|+++...+. .+++.|+..|+|||+|++...+| +. .|+.|+....
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~ 170 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSK 170 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCC
Confidence 467888888765443 36788899999999999876543 12 4555544433
|
| >2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.17 E-value=0.95 Score=41.57 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=27.2
Q ss_pred cCCChHHHHHHHHHhhc-cHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEANG-KLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~-d~~~A~~~Lr~~g 255 (837)
-|.+...|++||..++| |++.|++||-...
T Consensus 13 MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~ 43 (126)
T 2lbc_A 13 MGFPLEACRKAVYFTGNMGAEVAFNWIIVHM 43 (126)
T ss_dssp TSSCCHHHHHHHHHHTSCCHHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 68999999999999966 9999999998864
|
| >2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.99 E-value=1.4 Score=32.46 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=27.6
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
-|+...+..+||.-+++|++.|-+.||+-.
T Consensus 14 ~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 14 QGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp TTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 478899999999999999999999999863
|
| >3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.54 E-value=0.71 Score=34.34 Aligned_cols=33 Identities=21% Similarity=0.100 Sum_probs=28.1
Q ss_pred cchhhhhcccCCC-hHHHHHHHHHhhccHHHHHH
Q psy13351 217 KTVGELRSKTLAP-IMECKKALIEANGKLSKAEE 249 (837)
Q Consensus 217 ~~v~~lr~~t~~~-~~~~k~al~~~~~d~~~A~~ 249 (837)
..+.++..-||.. +.+|+.-|+.+|||++.|+.
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 4567778889955 69999999999999999974
|
| >1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A | Back alignment and structure |
|---|
Probab=81.53 E-value=5.4 Score=38.48 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=33.8
Q ss_pred CCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC----CcceEEccCCCc
Q psy13351 148 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP----DGINYVIPGNDD 197 (837)
Q Consensus 148 ~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~----~~i~ypIP~N~~ 197 (837)
..-|++|+++...+. .++++|+..|.|+|+|+|...+| ..+.+.+|+...
T Consensus 78 ~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~ 135 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPK 135 (186)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCSC
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCccc
Confidence 356888888765443 36788999999999999875443 124445565443
|
| >3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=80.91 E-value=6.4 Score=37.92 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=39.3
Q ss_pred CCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC--Cc--ceEEccCCC----cchhhhhhhhhhchhhh
Q psy13351 149 IPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP--DG--INYVIPGND----DSAKSIALYTKGIVDAF 213 (837)
Q Consensus 149 ~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~--~~--i~ypIP~N~----~s~~si~~~~~~l~~ai 213 (837)
.-|++|+++...+. .+++.|...|+|+|+|.|...+| +. +.+++|.+. +|.-+.-+++.+|...+
T Consensus 87 ~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~S~~~~~~l~d~L~~~~ 163 (187)
T 3sho_A 87 PTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRGVGHSLSPVGLIAVVNLLLAEI 163 (187)
T ss_dssp TTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCCSSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCCCcccccHhHHHHHHHHHHHHH
Confidence 55788888655333 45678889999999999876544 12 444455543 23334444444444444
|
| >2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A | Back alignment and structure |
|---|
Probab=80.38 E-value=7 Score=38.74 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=32.2
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--CcceEEccC
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPG 194 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~ 194 (837)
..-|++|+++...+ ..++++|+..|.|||+|++...+| +..|+.|+.
T Consensus 130 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~ 182 (212)
T 2i2w_A 130 REGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRV 182 (212)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEc
Confidence 46788888876543 346788899999999999876433 234554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 837 | ||||
| d2gy9b1 | 218 | c.23.15.1 (B:8-225) Ribosomal protein S2 {Escheric | 7e-66 | |
| d2uubb1 | 234 | c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus | 2e-64 | |
| d1wqga1 | 183 | d.67.3.1 (A:2-184) Ribosome recycling factor, RRF | 2e-43 | |
| d1eh1a_ | 185 | d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther | 1e-42 | |
| d1is1a_ | 185 | d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibr | 2e-42 | |
| d1vi6a_ | 193 | c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Arch | 3e-41 | |
| d1ek8a_ | 185 | d.67.3.1 (A:) Ribosome recycling factor, RRF {Esch | 1e-40 | |
| d1dd5a_ | 184 | d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther | 1e-39 | |
| d1ge9a_ | 184 | d.67.3.1 (A:) Ribosome recycling factor, RRF {Aqui | 5e-38 | |
| d2a1fa1 | 236 | c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi | 2e-35 | |
| d1ybda1 | 236 | c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri | 5e-34 | |
| d1z9da1 | 238 | c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc | 1e-31 | |
| d2ij9a1 | 219 | c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog | 1e-27 | |
| d1xb2b2 | 111 | d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), | 1e-22 | |
| d1efub4 | 85 | d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), | 9e-22 | |
| d1wiha_ | 84 | d.67.3.1 (A:) Ribosome recycling factor, RRF {Mous | 2e-19 | |
| d2brxa1 | 225 | c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc | 8e-19 | |
| d2cdqa1 | 304 | c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar | 1e-13 | |
| d1efub2 | 143 | d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), | 2e-12 | |
| d1xb2b1 | 56 | a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N | 4e-11 | |
| d1aipc1 | 52 | a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-t | 4e-11 | |
| d1efub3 | 54 | a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-t | 5e-11 | |
| d2hmfa1 | 302 | c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja | 1e-10 | |
| d2j0wa1 | 292 | c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli | 1e-09 | |
| d1tfea_ | 142 | d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimeri | 7e-08 | |
| d1tfea_ | 142 | d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimeri | 9e-05 | |
| d1xb2b3 | 109 | d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), | 9e-06 |
| >d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Ribosomal protein S2 family: Ribosomal protein S2 domain: Ribosomal protein S2 species: Escherichia coli [TaxId: 562]
Score = 216 bits (552), Expect = 7e-66
Identities = 104/218 (47%), Positives = 154/218 (70%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
ML+AGVHFGHQTR+WNPKM +IFG RNK+HIINLEKT+ M+ +A+ + ++ KG +L
Sbjct: 1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 60
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKR A + + A+ F++ RWLGG+LTN+KT++ SI+RLK+++ +G+ K
Sbjct: 61 FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 120
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L+KKEAL+ R+ KL +GGIK+M +PDA+F+ID + A+ EA L IP+ +VD
Sbjct: 121 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 180
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218
TN PDG+++VIPGNDD+ +++ LY + + ++
Sbjct: 181 TNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRS 218
|
| >d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Ribosomal protein S2 family: Ribosomal protein S2 domain: Ribosomal protein S2 species: Thermus thermophilus [TaxId: 274]
Score = 213 bits (544), Expect = 2e-64
Identities = 99/217 (45%), Positives = 144/217 (66%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAGVHFGH+ + WNPK + YI+ RN IHII+L+KT+ E+ R+I L GT+L
Sbjct: 4 LLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTIL 63
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK+QA+ ++ EA RAGMP+++QRWLGG+LTNFKTI + RL+E++ + I +
Sbjct: 64 FVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEE 123
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
KKE + + +L + + G + + +PDAIF++D AV EA KL IP+I + D
Sbjct: 124 RPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALAD 183
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
T+ PD ++Y+IPGNDD+ +SI L VD + A+
Sbjct: 184 TDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 220
|
| >d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 153 bits (387), Expect = 2e-43
Identities = 64/182 (35%), Positives = 111/182 (60%)
Query: 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 713
I + + ++KM + + +++L +RTGRAN GM I + Y+ T + ++A+I +
Sbjct: 1 IDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPE 60
Query: 714 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 773
+ + I+P+E I+ AI ++LG+NPT G +I V++P LT+ERR E+VK K+
Sbjct: 61 ARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKG 120
Query: 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833
EE K+S+R IRR + E L ++ K D RA+ D+ K T +++ +I++L+ +KE E
Sbjct: 121 EEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGE 180
Query: 834 IL 835
+L
Sbjct: 181 LL 182
|
| >d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Thermus thermophilus [TaxId: 274]
Score = 151 bits (382), Expect = 1e-42
Identities = 72/184 (39%), Positives = 126/184 (68%)
Query: 652 MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITL 711
M + ++ T+ M ++++L+ NL +RTGRAN +L +++V+Y+ L +IA +T
Sbjct: 1 MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTA 60
Query: 712 FNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKN 771
+ T+ +Q +++ I+KAI +++LGLNP+ +G+ +Y++IPPLT+ERR+++V+ ++
Sbjct: 61 PDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQ 120
Query: 772 ITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKE 831
EE +++IR IRR++ + LKKL K LS D RA+ +IQK+TD+FI + +QL KE
Sbjct: 121 YAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKE 180
Query: 832 KEIL 835
+EIL
Sbjct: 181 QEIL 184
|
| >d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Vibrio parahaemolyticus [TaxId: 670]
Score = 150 bits (380), Expect = 2e-42
Identities = 79/183 (43%), Positives = 132/183 (72%)
Query: 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 713
I++IKK+ +++M +++ LK NL KVRTGRA+ +L I V+Y+ T L ++AN+ +
Sbjct: 2 INEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAED 61
Query: 714 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 773
+ T++I F+KE++ ++KAI ++LGLNP G II V +PPLT+ERR+++VK+++
Sbjct: 62 ARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEA 121
Query: 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833
E ++++R IRRD+N +LK LLK+K +S D + +AQ +IQKLTD + +I+++L KEKE
Sbjct: 122 EGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKE 181
Query: 834 ILT 836
++
Sbjct: 182 LME 184
|
| >d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Ribosomal protein S2 family: Ribosomal protein S2 domain: Ribosomal protein S2 species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 147 bits (372), Expect = 3e-41
Identities = 42/218 (19%), Positives = 85/218 (38%), Gaps = 51/218 (23%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 59
L AGVH G Q + + M +IF R + ++++++ K A +++ + + +
Sbjct: 11 YLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSR--YEPSKI 66
Query: 60 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 119
L V ++ A + + G +I R++ G LTN
Sbjct: 67 LLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNP----------------------- 103
Query: 120 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 179
+ + P+ +F+ D K AVSEA + IP++ +
Sbjct: 104 -----------------------MLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALC 140
Query: 180 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
D+N+S ++ VIP N+ +++A+ + +
Sbjct: 141 DSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIR 178
|
| >d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Escherichia coli [TaxId: 562]
Score = 145 bits (366), Expect = 1e-40
Identities = 74/183 (40%), Positives = 128/183 (69%)
Query: 653 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 712
+ISDI+K+ + +M ++ K + K+RTGRA+ +LD I V+Y+ T L ++A++T+
Sbjct: 1 MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE 60
Query: 713 NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 772
+S T+ I F++ MS ++KAI ++LGLNP G+ I V +PPLT+ERR+++ K+++
Sbjct: 61 DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120
Query: 773 TEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 832
E+ ++++R +RRD+N+ +K LLK+K +S D++ R+Q D+QKLTD I +I L +KE
Sbjct: 121 AEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180
Query: 833 EIL 835
E++
Sbjct: 181 ELM 183
|
| >d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Thermotoga maritima [TaxId: 2336]
Score = 142 bits (359), Expect = 1e-39
Identities = 68/182 (37%), Positives = 121/182 (66%)
Query: 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 713
++ K K+KM T++ +++ L+K+RTG+ + +L+ I+V Y+ T + ++A I++
Sbjct: 1 VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISE 60
Query: 714 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 773
T+ I+P++K + S+I+KAIN ++LGLNP GN+I + P T E+RE+ VK K I
Sbjct: 61 ERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIV 120
Query: 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833
EE KI+IR IRR+ + +K+ K ++ D+ R + +IQKLTD+FI +++++ K++E
Sbjct: 121 EEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEE 180
Query: 834 IL 835
I+
Sbjct: 181 IM 182
|
| >d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Aquifex aeolicus [TaxId: 63363]
Score = 138 bits (348), Expect = 5e-38
Identities = 71/186 (38%), Positives = 121/186 (65%), Gaps = 4/186 (2%)
Query: 651 IMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANIT 710
I + DI K ++ M ++ K + +RT RA+ +++ I+V+Y+ + ++ I+
Sbjct: 2 IKELEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTIS 61
Query: 711 LFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIK 770
+ + I IQ +++ I+KAI E L LNPT+QGN+I V++PPLT+ERR E+V+L+
Sbjct: 62 VPEHNQIVIQVWDQNAVPAIEKAIRE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLH 120
Query: 771 NITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 830
ITEE ++ +R +RR++ E +++L + +S D + RA +QKLTDK+I EIN+L+ K
Sbjct: 121 KITEEARVRVRNVRREAKEMIEEL---EGISEDEKKRALERLQKLTDKYIDEINKLMEAK 177
Query: 831 EKEILT 836
EKEI++
Sbjct: 178 EKEIMS 183
|
| >d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Haemophilus influenzae [TaxId: 727]
Score = 132 bits (332), Expect = 2e-35
Identities = 102/222 (45%), Positives = 152/222 (68%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEAL D I+ +I+ + EI E+V G+E+++V+GGGN+ RG ++R D
Sbjct: 14 GEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGD 73
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
+MGMLAT++N LA+ D L ++ + + +MSA + ++Y AIK L E +VVIF+ G
Sbjct: 74 HMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAG 133
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 604
GNPFFTTD+TA LR EI+A+++LKATKVDG+Y+ DP K A +YK +++ EVI K+L
Sbjct: 134 TGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKEL 193
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
++MD +AF+ RD +PIRVF++ K GAL++V+ G EGT +
Sbjct: 194 KVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI 235
|
| >d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Neisseria meningitidis [TaxId: 487]
Score = 128 bits (321), Expect = 5e-34
Identities = 123/223 (55%), Positives = 166/223 (74%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GE+LM D + IN I + EI+E+V G+++ IV+GGGNI RG+S + ++DR+TAD
Sbjct: 13 GESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATAD 72
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
YMGM+AT++N+LAL D GI + V SA+S+++ E+Y AI+YLEEGKVVIFA G
Sbjct: 73 YMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAG 132
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 604
GNPFFTTDT AALR AE+ +++LKAT VDG+Y +DP K SA Y+ ITFDE + K L
Sbjct: 133 TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNL 192
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647
++MD+TAF+ CR++KL I VF I K G+LKRVI G++EGTLV+
Sbjct: 193 KVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 235
|
| >d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Streptococcus pyogenes [TaxId: 1314]
Score = 121 bits (304), Expect = 1e-31
Identities = 84/223 (37%), Positives = 138/223 (61%), Gaps = 1/223 (0%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEAL I+ ++ I EI+E+ G+++A+VIGGGN+ RG +DR AD
Sbjct: 13 GEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQAD 72
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
Y GML T++N+L + D L G+ + V +AI ++ E YI A+++LE+ ++V+F G
Sbjct: 73 YTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAG 132
Query: 545 IGNPFFTTD-TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 603
IG+P+F+TD T A A I++ VDG+YN+DP K +A+ + ++T EVI +
Sbjct: 133 IGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRG 192
Query: 604 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
L+IMD+TA + D + + VF++ ++G ++RV+ G++ GT V
Sbjct: 193 LKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTV 235
|
| >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 109 bits (273), Expect = 1e-27
Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 34/233 (14%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRST 482
G L S I+ I + ++ +V+GGG + R + +
Sbjct: 9 GSVLSN------ESEKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARELGASETF 61
Query: 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 542
DY+G+ AT +N++ L + + V + A + + +VV+
Sbjct: 62 CDYIGIAATRLNAMLLISAIPSAAKKVPVD-------------FMEAEELSKLYRVVVMG 108
Query: 543 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK 602
G P TTD TAAL A IKA++ + AT VDG+Y++DP SA+ Y +++ +++
Sbjct: 109 GT--FPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEI 166
Query: 603 KLE---------IMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
++D A K+ V + + ++G+ GT++
Sbjct: 167 VSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTVI 218
|
| >d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 111 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 91.2 bits (226), Expect = 1e-22
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 265 RNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNL 324
R K+G+I + LVE+NCETDFV++N +F + +++A + DQL+
Sbjct: 2 RKTKEGLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTY 61
Query: 325 K--------------IKNNLLTVDEKCKELISRIGENIKIRRFKLFK 357
++ ++ I ++GEN+ ++R K
Sbjct: 62 SKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVK 108
|
| >d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Escherichia coli [TaxId: 562]
Score = 88.0 bits (218), Expect = 9e-22
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 267 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKI 326
A DGVI I G ++E+NC+TDFVAK+ F F+ K+ +++ L
Sbjct: 2 AADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKA--- 58
Query: 327 KNNLLTVDEKCKELISRIGENIKIRRFKLF 356
+E+ L+++IGENI IRR
Sbjct: 59 -----QFEEERVALVAKIGENINIRRVAAL 83
|
| >d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Length = 84 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]
Score = 81.0 bits (200), Expect = 2e-19
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 682 GRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKKAINEANLG 740
G + LD+I V + L +I I++ + I + E ++ KAI E+ +
Sbjct: 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60
Query: 741 LNPTIQGNIIYVSIPPLTKERRE 763
LNP ++G +I V IP +T
Sbjct: 61 LNPEVEGTLIRVPIPKVTSGPSS 83
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Score = 83.9 bits (206), Expect = 8e-19
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 29/234 (12%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS--NKIQNIDRST 482
G L+ N + IK I +++++ E+A+V+GGG + R + N +
Sbjct: 9 GSVLVPE---NPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETF 64
Query: 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 542
D++G+ T N++ L L + V K ++ I
Sbjct: 65 KDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLK--------------KIPV 110
Query: 543 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS- 601
G +P TTD AAL A +KA++++ T VDG+Y +DP K +A KK+ +E++
Sbjct: 111 MGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEI 170
Query: 602 --------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647
++D A + V + L RVI+G + GT +
Sbjct: 171 VGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE 224
|
| >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 70.6 bits (172), Expect = 1e-13
Identities = 33/227 (14%), Positives = 74/227 (32%), Gaps = 29/227 (12%)
Query: 440 IIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATI------- 492
+K + + S I++ EL ++ G + + ++ + ++ S + +
Sbjct: 80 TVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIG 139
Query: 493 INSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGN----- 547
+ + + +E + ++ + V I G +G
Sbjct: 140 VKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTG 199
Query: 548 -----PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-- 600
+D TA + + I VDG+ DP A +TFDE
Sbjct: 200 AVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAEL 259
Query: 601 -SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
+++ + R+ ++P+RV + K GT++
Sbjct: 260 AYFGAQVLHPQSMRPAREGEIPVRVKNS---------YNPKAPGTII 297
|
| >d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Escherichia coli [TaxId: 562]
Score = 63.4 bits (154), Expect = 2e-12
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 364 SYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQ 423
SY H +IGV+V G +E VK +AMH+AA KP + + + +++EKEY + + A Q
Sbjct: 5 SYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQ 64
|
| >d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 56 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: TS-N domain domain: Elongation factor Ts (EF-Ts), N-terminal domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 56.5 bits (137), Expect = 4e-11
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNR 265
+ + +LR KT + CKKAL G L +AE L + K+ + + R
Sbjct: 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAAR 54
|
| >d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 52 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: TS-N domain domain: Elongation factor Ts (EF-Ts), N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 56.5 bits (137), Expect = 4e-11
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNR 265
+ + +LR T A +M+ K+AL +A KA ++LR + K ++R
Sbjct: 2 QMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADR 52
|
| >d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 54 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: TS-N domain domain: Elongation factor Ts (EF-Ts), N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 56.5 bits (137), Expect = 5e-11
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 212 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKK 258
A + A V ELR +T A +M+CKKAL EANG + A E +R K
Sbjct: 1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIK 47
|
| >d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Score = 61.0 bits (147), Expect = 1e-10
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 530 IKYLEEGKVVIFAGGIGN---------PFFTTDTTAALRAAEIKAEIILKATKVDGIYNS 580
+ L+EG + + G IG +D +AAL + A+II T V G+Y +
Sbjct: 178 LPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTT 237
Query: 581 DPNKCLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 637
DP +A K+++ E + +++ ++ +PI V +
Sbjct: 238 DPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNT---------F 288
Query: 638 EGKNEGTLV 646
E ++EGTL+
Sbjct: 289 EPESEGTLI 297
|
| >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Score = 58.3 bits (140), Expect = 1e-09
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 548 PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI---SKKL 604
+D TAAL A + A + T V GIY +DP +A +I F E +
Sbjct: 195 GRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGA 254
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
+++ +P+ V S + + GTLV
Sbjct: 255 KVLHPATLLPAVRSDIPVFVGSS---------KDPRAGGTLV 287
|
| >d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Thermus thermophilus [TaxId: 274]
Score = 50.1 bits (119), Expect = 7e-08
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 48/139 (34%)
Query: 267 AKDGVIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP-------IN 317
A++G+I YI +++VG LVE+NCETDFVA+N F +K +A I P I
Sbjct: 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIP 60
Query: 318 LDQLNNLK---------------------------------------IKNNLLTVDEKCK 338
++L + +K++ + V E +
Sbjct: 61 AEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQ 120
Query: 339 ELISRIGENIKIRRFKLFK 357
+ I++IGENI +RRF F+
Sbjct: 121 QAIAKIGENIVVRRFCRFE 139
|
| >d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Thermus thermophilus [TaxId: 274]
Score = 41.2 bits (96), Expect = 9e-05
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 364 SYLH-DNKIGVIVEYNGDNESA---------VKDVAMHIAAMKPIALSSDQIPKKIIEKE 413
Y+H + ++GV+VE N + + KD+AMHIA M P +S+++IP + +EKE
Sbjct: 8 HYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKE 67
Query: 414 YSLAVLKAQQLGEA 427
+ + A G+
Sbjct: 68 RQIYIQAALNEGKP 81
|
| >d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 109 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 42.9 bits (101), Expect = 9e-06
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 18/70 (25%)
Query: 364 SYLHDN------------KIGVIVEYNGDNESA-----VKDVAMHIAAMKPIALSSDQIP 406
SY+H K G +V A + + H+ M P+++ S
Sbjct: 6 SYVHGAMHSPSLHNLVLGKYGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDDE 65
Query: 407 KKIIEKEYSL 416
E E +
Sbjct: 66 PG-GEAETKM 74
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 837 | |||
| d2uubb1 | 234 | Ribosomal protein S2 {Thermus thermophilus [TaxId: | 100.0 | |
| d2gy9b1 | 218 | Ribosomal protein S2 {Escherichia coli [TaxId: 562 | 100.0 | |
| d1is1a_ | 185 | Ribosome recycling factor, RRF {Vibrio parahaemoly | 100.0 | |
| d1wqga1 | 183 | Ribosome recycling factor, RRF {Mycobacterium tube | 100.0 | |
| d1dd5a_ | 184 | Ribosome recycling factor, RRF {Thermotoga maritim | 100.0 | |
| d1vi6a_ | 193 | Ribosomal protein S2 {Archaeon Archaeoglobus fulgi | 100.0 | |
| d1ek8a_ | 185 | Ribosome recycling factor, RRF {Escherichia coli [ | 100.0 | |
| d1eh1a_ | 185 | Ribosome recycling factor, RRF {Thermus thermophil | 100.0 | |
| d1ge9a_ | 184 | Ribosome recycling factor, RRF {Aquifex aeolicus [ | 100.0 | |
| d2a1fa1 | 236 | Uridylate kinase PyrH {Haemophilus influenzae [Tax | 99.97 | |
| d2brxa1 | 225 | Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: | 99.97 | |
| d2ij9a1 | 219 | Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax | 99.97 | |
| d1ybda1 | 236 | Uridylate kinase PyrH {Neisseria meningitidis [Tax | 99.97 | |
| d1z9da1 | 238 | Uridylate kinase PyrH {Streptococcus pyogenes [Tax | 99.95 | |
| d2akoa1 | 250 | Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1 | 99.94 | |
| d1wiha_ | 84 | Ribosome recycling factor, RRF {Mouse (Mus musculu | 99.91 | |
| d2bufa1 | 300 | N-acetyl-l-glutamate kinase {Pseudomonas aeruginos | 99.9 | |
| d2ap9a1 | 291 | N-acetyl-l-glutamate kinase {Mycobacterium tubercu | 99.89 | |
| d2btya1 | 282 | N-acetyl-l-glutamate kinase {Thermotoga maritima [ | 99.89 | |
| d1e19a_ | 313 | Carbamate kinase {Archaeon Pyrococcus furiosus [Ta | 99.88 | |
| d2j0wa1 | 292 | Aspartokinase {Escherichia coli [TaxId: 562]} | 99.88 | |
| d2hmfa1 | 302 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 99.88 | |
| d2cdqa1 | 304 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 99.87 | |
| d1xb2b2 | 111 | Elongation factor Ts (EF-Ts), dimerisation domain | 99.87 | |
| d1tfea_ | 142 | Elongation factor Ts (EF-Ts), dimerisation domain | 99.84 | |
| d1efub4 | 85 | Elongation factor Ts (EF-Ts), dimerisation domain | 99.83 | |
| d1b7ba_ | 307 | Carbamate kinase {Enterococcus faecium [TaxId: 135 | 99.83 | |
| d1gs5a_ | 258 | N-acetyl-l-glutamate kinase {Escherichia coli [Tax | 99.71 | |
| d1aipc1 | 52 | Elongation factor Ts (EF-Ts), N-terminal domain {T | 99.66 | |
| d1xb2b1 | 56 | Elongation factor Ts (EF-Ts), N-terminal domain {C | 99.64 | |
| d1efub2 | 143 | Elongation factor Ts (EF-Ts), dimerisation domain | 99.64 | |
| d1efub3 | 54 | Elongation factor Ts (EF-Ts), N-terminal domain {E | 99.62 | |
| d1xb2b3 | 109 | Elongation factor Ts (EF-Ts), dimerisation domain | 99.61 | |
| d1efub2 | 143 | Elongation factor Ts (EF-Ts), dimerisation domain | 99.58 | |
| d1tfea_ | 142 | Elongation factor Ts (EF-Ts), dimerisation domain | 99.4 | |
| d1xb2b3 | 109 | Elongation factor Ts (EF-Ts), dimerisation domain | 98.9 | |
| d2cpwa1 | 51 | Cbl-interacting protein p70, STS1 {Human (Homo sap | 94.46 | |
| d1wgna_ | 63 | Ubiquitin-associated protein 1, UBAP1 {Human (Homo | 94.25 | |
| d1oqya1 | 41 | DNA repair protein Hhr23a {Human (Homo sapiens) [T | 94.18 | |
| d1wjia_ | 63 | Tudor domain containing protein 3, TDRD3 {Human (H | 93.89 | |
| d1vg5a_ | 73 | Rhomboid family protein At3g58460 {Thale cress (Ar | 93.03 | |
| d1wiva_ | 73 | Ubiquitin isopeptidase T {Thale cress (Arabidopsis | 92.57 | |
| d2daha1 | 41 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 92.31 | |
| d1x94a_ | 191 | Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T | 91.66 | |
| d1whca_ | 64 | UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta | 91.51 | |
| d2crna1 | 51 | Suppressor of T-cell receptor signaling 2 (STS-2) | 91.05 | |
| d1x92a_ | 194 | Phosphoheptose isomerase GmhA1 {Pseudomonas aerugi | 90.66 | |
| d2g3qa1 | 43 | Endocytic protein Ede1, YBL047C {Saccharomyces cer | 90.54 | |
| d2bwba1 | 44 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.62 | |
| d2dnaa1 | 50 | Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus | 88.5 | |
| d1wj7a1 | 91 | Ubiquitin-associated protein 2-like Ubap2l {Mouse | 87.42 | |
| d1tk9a_ | 188 | Phosphoheptose isomerase GmhA1 {Campylobacter jeju | 87.38 | |
| d1veja1 | 61 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 86.73 | |
| d1v92a_ | 46 | NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { | 85.39 | |
| d1veka_ | 84 | Ubiquitin isopeptidase T {Thale cress (Arabidopsis | 84.24 |
| >d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Ribosomal protein S2 family: Ribosomal protein S2 domain: Ribosomal protein S2 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.4e-67 Score=538.00 Aligned_cols=218 Identities=45% Similarity=0.813 Sum_probs=216.1
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||+||+||||++++|||+|+|||||.|||+|||||++|+.+|++|+++|..++.+||+||||||+++++++|+++|+++|
T Consensus 4 ll~ag~H~Gh~~~~wnpkm~~yIyg~rngihIIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~i~~~A~~~~ 83 (234)
T d2uubb1 4 LLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAG 83 (234)
T ss_dssp SSCTTSTTBCCCSCCCGGGGGGEEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCCEEEECCSSSSHHHHHHHHHSSS
T ss_pred HHhCCCcccCCcCcCCCCCccceecccCCcEEEcHHHHHHHHHHHHHHHHHHHhcCCceeEEeccHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||.++++++++|++++.....+.++.++|||...+.|++.||+++|+|+++|+++||+|||+||..
T Consensus 84 ~~yv~~RWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~tkke~~~~~~~~~kl~k~~~Gi~~m~~~Pd~viv~d~~~ 163 (234)
T d2uubb1 84 MPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTK 163 (234)
T ss_dssp CCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHHSSTTGGGSCHHHHTHHHHHHHHHHHHSTTGGGCSSCCSEEEESCTTT
T ss_pred CEEeccceeCCccccccccchhhhhhHHHHHHhhcCcccccchHHHHHHHHHHHHHHHhhccchhhhhcceeEEEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
|++||+||.++||||||||||||||++|||||||||||.+|++||+++|++||++|+.
T Consensus 164 ~~~Ai~Ea~~l~IPvIaivDTn~dp~~vdypIP~NDds~~sI~li~~~l~~ai~~gk~ 221 (234)
T d2uubb1 164 EAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARG 221 (234)
T ss_dssp THHHHHHHHHHTCCEEEEECTTSCGGGCSEEEESCSSCHHHHHHHHHHHHHHHHTTSS
T ss_pred cHHHHHHHHhhCCCEEEEeecCCCccCCcEEEECCCchHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999985
|
| >d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Ribosomal protein S2 family: Ribosomal protein S2 domain: Ribosomal protein S2 species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-66 Score=529.70 Aligned_cols=217 Identities=48% Similarity=0.874 Sum_probs=215.3
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||+||+||||++++|||+|+|||||.|+|+|||||++|+.+|++|++++..++.++|+||||||+++++++|+++|++||
T Consensus 1 ll~ag~H~Gh~~~~wnp~m~~yIyg~r~gi~IIdL~~T~~~L~~A~~~l~~~~~~~g~iLfVgTk~~~~~~i~~~a~~~~ 80 (218)
T d2gy9b1 1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCD 80 (218)
T ss_dssp SCCTTSSSCCCSSCCCGGGGGGBCCCBTTBCCBCHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSTTSHHHHHHHHHHTT
T ss_pred CCccccccCcccCccCCCcccceecccCCcEEEcHHHHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||+++++++++|+.++.....+.|+.++|||.+.+.|++.||+++|+|+++|+++||+|||+||..
T Consensus 81 ~~yvn~rWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~~~~~~Kke~~~~~~~~~kl~~~~~Gi~~m~~lPd~vii~d~~~ 160 (218)
T d2gy9b1 81 QFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADH 160 (218)
T ss_dssp CEEECSCCCTTTTTTHHHHHHHHHHHHHHHHHHSSTTSSSSCHHHHHHHHHHHHHHHHHSSSGGGCCCCCCEEEESCTTT
T ss_pred CceecceeecCcccchhhhhhHHHHHHHHHHHhhcCcccccchHHHHHHHHHHHHHHHhhcCccCCCCCCceeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~ 217 (837)
|+.|++||.++||||||||||||||+.|||||||||||++|++|++++|++||++|+
T Consensus 161 ~~~ai~Ea~~l~IP~I~ivDTn~dp~~idypIP~Ndds~~sI~li~~~l~~ai~~G~ 217 (218)
T d2gy9b1 161 EHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 217 (218)
T ss_dssp THHHHHHHHHTTCCEEECCCSSSCGGGCTEECCSCSSCHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHcCCCEEEEeeCCCCCccCceeeecCCcHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999997
|
| >d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Vibrio parahaemolyticus [TaxId: 670]
Probab=100.00 E-value=3.2e-52 Score=412.90 Aligned_cols=184 Identities=43% Similarity=0.696 Sum_probs=181.7
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++.+++++|++++++|+.+|+++||||+||++||+|+|+|||+++||+++|+|+++++++|+|+|||++++++|++|
T Consensus 2 ~~~i~~~~~~kM~kai~~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekA 81 (185)
T d1is1a_ 2 INEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKA 81 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhCCeEEEECCCCccHHHHhhhccCCCceEEEEecccchHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++||||+||+.||+.||||||+||+|+|++++|.||+.+|++|++|||+||++++.+|+++|++.+|||+.++++++||
T Consensus 82 I~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~akv~iRniRr~~~~~ikk~~k~~~iseD~~k~~~~~iq 161 (185)
T d1is1a_ 82 IMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQ 161 (185)
T ss_dssp HHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHhcccccccccCCceeeecCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|++++|++++.||||||+|
T Consensus 162 ~ltd~~~~~id~~~~~KekEim~v 185 (185)
T d1is1a_ 162 KLTDVAVKKIDEVLAAKEKELMEV 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999987
|
| >d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=8.3e-52 Score=409.20 Aligned_cols=183 Identities=35% Similarity=0.583 Sum_probs=180.3
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++.+++++|++++++|+.+|+++||||+||++||+|+|+|||+++||+++|+|++++|++|+|+|||++++++|++|
T Consensus 1 i~~~l~~~~~kM~kai~~l~~el~~irtGRasp~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekA 80 (183)
T d1wqga1 1 IDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETA 80 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEeeCCCcccHHHHHhhhccCcceEEEeecchhhHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++||||+||+.||+.|+||||+||+|+|++++|.||+.+|++|++|||+||++++++|+++|++.+|||+.++++++||
T Consensus 81 I~~s~lglnP~~dg~~Irv~iP~lT~E~R~elvK~ak~~~E~aKv~iRniR~~~~~~lk~~~k~~~iseD~~~~~~~~iq 160 (183)
T d1wqga1 81 IRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLD 160 (183)
T ss_dssp HHHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCcCCceeeeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q psy13351 814 KLTDKFILEINQLLINKEKEILT 836 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~ 836 (837)
++||+|++++|+++++||||||+
T Consensus 161 ~ltd~~~~~id~~~~~KekEil~ 183 (183)
T d1wqga1 161 KTTHQYVTQIDELVKHKEGELLE 183 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999984
|
| >d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.2e-51 Score=408.54 Aligned_cols=184 Identities=37% Similarity=0.600 Sum_probs=180.9
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++++++++|++++++|+.+|+++||||+||++||+|+|++||.++||+++|+|+++++++|+|+|||++++++|++|
T Consensus 1 i~~~~~~~~~kM~~ai~~l~~el~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~I~kA 80 (184)
T d1dd5a_ 1 VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKA 80 (184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHCceEEeeCCCcccHHHHhhhccCCcceeEeeccchhhHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++||||+||++||+.|+||||+||+|+|++++|.||+.+|+||++||++||++++++|+++|++++|||+.++++++||
T Consensus 81 I~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iR~iR~~~~~~lk~~~k~~~iseD~~k~~~~~iq 160 (184)
T d1dd5a_ 81 INASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQ 160 (184)
T ss_dssp HHHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHhcccCCCCccCcccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|++++|+++++||||||+.
T Consensus 161 ~ltd~~~~~id~~~~~Kekeim~~ 184 (184)
T d1dd5a_ 161 KLTDEFIEKLDEVFEIKKEEIMEF 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999973
|
| >d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Ribosomal protein S2 family: Ribosomal protein S2 domain: Ribosomal protein S2 species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.9e-52 Score=414.69 Aligned_cols=168 Identities=25% Similarity=0.402 Sum_probs=159.4
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+.++|| |+|||||.| ||+|||||++|+.+|++|++++..+ ++|+||||||+++++.+|+++|+++
T Consensus 11 ll~agvH~G~~~~~~~--M~~YIy~~r~ngi~IIdL~kT~~~L~~A~~~l~~~--~~~~ILfVgtk~~~~~~v~~~A~~~ 86 (193)
T d1vi6a_ 11 YLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY--EPSKILLVAARQYAHKPVQMFSKVV 86 (193)
T ss_dssp HHHHTTTBCCSCCCTT--TGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS--CGGGEEEEECSGGGHHHHHHHHHHH
T ss_pred HHHhCeeeCCCcCCCC--CccccccccCCCeEEeeHHHHHHHHHHHHHHHHHh--ccCceEEeecccchHHHHHHHHHhc
Confidence 5899999999987776 999999998 7999999999999999999999976 6799999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++|+++||+||+||||.+. +.++||++||+||.
T Consensus 87 g~~~v~~RWlgG~LTN~~~~----------------------------------------------~~~~P~~liv~dp~ 120 (193)
T d1vi6a_ 87 GSDYIVGRFIPGTLTNPMLS----------------------------------------------EYREPEVVFVNDPA 120 (193)
T ss_dssp CCEEEESSCCTTTTTCTTST----------------------------------------------TCCCCSEEEESCTT
T ss_pred CCCcccccccCCcccchHHh----------------------------------------------hcccceEEEEEcCc
Confidence 99999999999999998731 23699999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
.|++||+||.++||||||+|||||||++|||||||||||.+|++|++++|+++++++|.
T Consensus 121 ~d~~ai~Ea~~l~IPvI~ivDTn~~p~~vdy~IP~Ndds~~Si~li~~~l~~ai~~~k~ 179 (193)
T d1vi6a_ 121 IDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRG 179 (193)
T ss_dssp TTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCeeeEeccCCCCcccceEEeCCCChHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999985
|
| >d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-51 Score=405.36 Aligned_cols=184 Identities=40% Similarity=0.673 Sum_probs=181.1
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++++++++|++++++|+.+|+++||||+||++||+|+|+|||.++||++||+|+++++++|+|+|||++.+++|++|
T Consensus 2 i~~i~~~~~~kM~k~ie~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekA 81 (185)
T d1ek8a_ 2 ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKA 81 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCTTTTTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCeeEEeeCCCcccHHHHhhhccCcchheeeeechHhhHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++||||+||+.||+.|||+||+||+|+|++++|.+|+.+|++|++||++||++++++|+++|++++|||+.++++++||
T Consensus 82 I~~s~lgl~p~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~~kv~iR~iRr~~~~~ik~~~k~~~iseD~~k~~~~~iq 161 (185)
T d1ek8a_ 82 IMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQ 161 (185)
T ss_dssp HHHTCSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHhccCCCCCCccccceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|++++|++++.||||||+.
T Consensus 162 ~ltd~~~~~id~~~~~Kekeil~~ 185 (185)
T d1ek8a_ 162 KLTDAAIKKIEAALADKEAELMQF 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999973
|
| >d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.7e-51 Score=404.49 Aligned_cols=185 Identities=39% Similarity=0.653 Sum_probs=181.7
Q ss_pred hhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHH
Q psy13351 652 MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIK 731 (837)
Q Consensus 652 ~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ 731 (837)
|.+++++.+++++|++++++|+++|+++||||+||++||+|+|++||+++||++||+|+++++++|+|+|||++++++|+
T Consensus 1 m~~~~~~~~~~~~M~k~i~~l~~~l~~irtGra~p~lld~i~V~~~g~~~pL~~lA~Isv~~~~~l~I~~~D~~~v~~I~ 80 (185)
T d1eh1a_ 1 MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIE 80 (185)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHcCCeEEeeCCCcccHHHHhhhccCCcceEEeeccchHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHH
Q psy13351 732 KAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYD 811 (837)
Q Consensus 732 kaI~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~ 811 (837)
+||++||||+||+.||+.|+||||+||+|+|++++|.||+.+|++|++||++||++++++|+++|++.+|||+.++++++
T Consensus 81 kAI~~s~l~l~p~~dg~~Irv~iP~lT~E~R~elvK~~k~~~E~akv~iR~iR~~~~~~ikk~~k~~~iseD~~k~~~~e 160 (185)
T d1eh1a_ 81 KAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAE 160 (185)
T ss_dssp HHHSSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHhcCcccccccCccceeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q psy13351 812 IQKLTDKFILEINQLLINKEKEILT 836 (837)
Q Consensus 812 iq~l~~~~~~~id~~~~~kekei~~ 836 (837)
||++||+|++++|+++++||||||.
T Consensus 161 iq~ltd~~~~~id~~~~~KekEilg 185 (185)
T d1eh1a_ 161 IQKITDEFIAKADQLAEKKEQEILG 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999984
|
| >d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=7.8e-50 Score=395.36 Aligned_cols=181 Identities=38% Similarity=0.632 Sum_probs=176.0
Q ss_pred hhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHH
Q psy13351 653 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKK 732 (837)
Q Consensus 653 v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~k 732 (837)
.+++++++++++|++++++|+.+|+++||||+||++||+|+|+|||+++||+++|+|+++++++|+|+|||++++++|++
T Consensus 4 ~~~~i~~~~~~~m~k~i~~l~~el~~irtGRasp~lld~i~V~~yg~~~pL~~lA~Is~~~~~~l~i~~~D~~~v~~Iek 83 (184)
T d1ge9a_ 4 ELEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEK 83 (184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEeeCCCcccHHHHHHhhcCCcceeeeecccHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHH
Q psy13351 733 AINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDI 812 (837)
Q Consensus 733 aI~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~i 812 (837)
|| .|+||+||+.+|+.||||||+||+|+|++++|.||+.+|+||++|||+||++++++|+++ .+|||+.++++++|
T Consensus 84 AI-~s~lglnp~~~g~~Iri~iP~lT~E~R~~lvK~ak~~~E~aKv~iRniR~~~~~~lKk~k---~iseD~~k~~~~~i 159 (184)
T d1ge9a_ 84 AI-REELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE---GISEDEKKRALERL 159 (184)
T ss_dssp HH-HHHHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST---TCCHHHHHHHHHHH
T ss_pred HH-hccCCCCCCCCCcceeccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 99 479999999999999999999999999999999999999999999999999999999773 49999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 813 QKLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 813 q~l~~~~~~~id~~~~~kekei~~~ 837 (837)
|++||+|++++|+++++||||||+|
T Consensus 160 qkltd~~~~~id~~~~~Kekeim~v 184 (184)
T d1ge9a_ 160 QKLTDKYIDEINKLMEAKEKEIMSV 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999987
|
| >d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Haemophilus influenzae [TaxId: 727]
Probab=99.97 E-value=2.2e-31 Score=276.47 Aligned_cols=232 Identities=45% Similarity=0.762 Sum_probs=178.6
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
++|+|+|. +|+++..+++..++.+++++++++|+++++.|+++++|+||+..+..........+..............
T Consensus 5 ~kRIViKi--Ggs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vivVssg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (236)
T d2a1fa1 5 YKRILLKL--SGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVM 82 (236)
T ss_dssp CSEEEEEE--CGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEE--ccceecCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecccccchhhhhhhcCCCchhhHHHHHHHHHH
Confidence 46789994 4555555555569999999999999999999999999998853332222222233333334444444444
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
....+...+..........................+...++.+.+|++.+..+.+..+||++|+++|.+++||.|+++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dnD~laa~vA~~~~Ad~lii~TD 162 (236)
T d2a1fa1 83 NGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATK 162 (236)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHhhccccchhhhhhhhhhHHHhhhhhhhhhhhhcccccccccccCCCCCCcHHHHHHHHHhchhHHHHhhc
Confidence 55555555666666655555544444445556677888889999999988777778899999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
||||||+||+.+|+|+++++++++|+.+.|+|++|++|+++|.++|++++|+||++|++|.++++|+.+||+|+
T Consensus 163 VdGvyt~dP~~~~~A~~i~~i~~~e~l~~G~~v~k~~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI~ 236 (236)
T d2a1fa1 163 VDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 236 (236)
T ss_dssp SSSCBCC-------CCBCSEECHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEEC
T ss_pred ccccccccccccccccccccccHHHHHhcCCceeHHHHHHHHHHCCCeEEEEeCCCCcHHHHHHcCCCCcceeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=4.4e-31 Score=272.24 Aligned_cols=211 Identities=27% Similarity=0.367 Sum_probs=171.9
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccccc--CCCcchHHHHHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIIN 494 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 494 (837)
+|+| .|+++++++. .+.+.+.+++++|+++.+ |+++|||||||+.++++..... +.++...+..+...+..+
T Consensus 3 IViK---iGGs~l~~~~--~~~~~i~~l~~~I~~l~~-~~~~viV~ggG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (225)
T d2brxa1 3 IVFD---IGGSVLVPEN--PDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRAN 76 (225)
T ss_dssp EEEE---ECHHHHCSSS--CCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEE---eehhhcCCCC--CCHHHHHHHHHHHHHHHc-CCcEEEEECccHHHHHHHHhhhhcchhhHHHHHhhhhHHHHH
Confidence 4677 4555665443 356789999999999866 6899999999988887665433 345555677777788888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 574 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDV 574 (837)
+.++++.|...|++... .+.....++++.+.|||++++ .++.+||++|+++|..|+||+|+++|||
T Consensus 77 ~~~~~~~l~~~~~~~~~------------~~~~~~~~~l~~~~ipv~~~~--~~~~~~D~lAa~lA~~l~Ad~lii~TDV 142 (225)
T d2brxa1 77 AMLLIAALREKAYPVVV------------EDFWEAWKAVQLKKIPVMGGT--HPGHTTDAVAALLAEFLKADLLVVITNV 142 (225)
T ss_dssp HHHHHHHHGGGBCSSCB------------CSHHHHHHHHHTTCBCEECCC--STTCCHHHHHHHHHHHTTCSEEEEECSS
T ss_pred HHHHHHHHHhhhccccc------------ccHHHHHHHHHhcccccccCC--CCCcchhHHHHHHHHHhCchhhhhhhhh
Confidence 88888889988877432 122334567899999999654 4677899999999999999999999999
Q ss_pred CccccCCCCCCCCceeccccCHHHHHH----------hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccce
Q psy13351 575 DGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT 644 (837)
Q Consensus 575 dGVy~~dP~~~~~a~~I~~is~~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT 644 (837)
|||||+||+.+|+|++|++++++|+.+ +|+|..+. |++.|.++|++++|+||++|++|.++++|+.+||
T Consensus 143 dGVyt~dP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~~k~-Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT 221 (225)
T d2brxa1 143 DGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPL-AAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGT 221 (225)
T ss_dssp SSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHH-HHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSE
T ss_pred hhhhhcccccccccccceEEecchHHHHhccCccccCCCCcccHH-HHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCc
Confidence 999999999999999999999998876 34565554 8999999999999999999999999999999999
Q ss_pred EEEE
Q psy13351 645 LVYE 648 (837)
Q Consensus 645 ~I~~ 648 (837)
+|.|
T Consensus 222 ~i~P 225 (225)
T d2brxa1 222 TIEP 225 (225)
T ss_dssp EECC
T ss_pred EecC
Confidence 9976
|
| >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=8.9e-31 Score=268.87 Aligned_cols=206 Identities=26% Similarity=0.410 Sum_probs=172.6
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccc--cCCCcchHHHHHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI--QNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 494 (837)
+|+| .|+++++++ .+.+++++++|+++.+.| +++||||||+.++++.... .+.++...+++++.++..+
T Consensus 3 IViK---iGgs~l~~~-----~~~i~~la~~i~~l~~~~-~~vIVvsgG~~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (219)
T d2ij9a1 3 VVLS---LGGSVLSNE-----SEKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLN 73 (219)
T ss_dssp EEEE---ECSSTTTTC-----HHHHHHHHHHHHHHHHHS-EEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred EEEE---ecccccCCc-----HHHHHHHHHHHHHHHcCC-cEEEEECCCccccchhhhhhhcCccHHHHHHHHHHHHHhh
Confidence 4677 555555543 467899999999998754 8999999999888765543 3567778888888888888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 574 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDV 574 (837)
+.+++..|...+... ..+.....++++.+.+||+.+. .+..++|++|+++|..++||.|+++|||
T Consensus 74 ~~~~~~~l~~~~~~~-------------~~~~~~~~~l~~~~~v~v~~~~--~~~~stD~laa~vA~~l~Ad~liilTDV 138 (219)
T d2ij9a1 74 AMLLISAIPSAAKKV-------------PVDFMEAEELSKLYRVVVMGGT--FPGHTTDATAALLAEFIKADVFINATNV 138 (219)
T ss_dssp HHHHHHHCTTBCSSC-------------CSSHHHHHHHHTTCSEEEECCC--SSSSCTHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHhhhccchh-------------hHHHHHHHHHhccCCceEECCC--CCCCcccHHHHHHHHHcCchHhhhccCc
Confidence 888887776666542 2334556778889999998765 4678899999999999999999999999
Q ss_pred CccccCCCCCCCCceeccccCHHHHHH---------hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceE
Q psy13351 575 DGIYNSDPNKCLSAIIYKKITFDEVIS---------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL 645 (837)
Q Consensus 575 dGVy~~dP~~~~~a~~I~~is~~e~~~---------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~ 645 (837)
|||||+||+.+|+|++|++++++|+.+ .|+|++|+.|+++|.++|++++|+||. |++|.++++|+.+||+
T Consensus 139 DGvYt~dP~~~~~A~~i~~is~~e~~~~~~~~~~~~~gg~~~k~~Aa~~a~~~gi~~~I~~g~-~~ni~~~l~Ge~vGT~ 217 (219)
T d2ij9a1 139 DGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILGT-PENIMKAVKGEAVGTV 217 (219)
T ss_dssp SSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEECC-HHHHHHHHTTCCCSEE
T ss_pred ccccccccccCcccccccccCHHHHHHHhhccCccCCCCCcchHHHHHHHHHcCCcEEEecCC-CcHHHHHHCCCCCceE
Confidence 999999999999999999999998876 577899999999999999999999995 7899999999999999
Q ss_pred EE
Q psy13351 646 VY 647 (837)
Q Consensus 646 I~ 647 (837)
|.
T Consensus 218 Is 219 (219)
T d2ij9a1 218 IA 219 (219)
T ss_dssp EC
T ss_pred eC
Confidence 84
|
| >d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Neisseria meningitidis [TaxId: 487]
Probab=99.97 E-value=4e-30 Score=266.45 Aligned_cols=232 Identities=54% Similarity=0.885 Sum_probs=189.8
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
++|+|+|+ +||++...++..++.+.++++|++|+++.+.|+++++|+|||..++.+.....+.+..............
T Consensus 4 ~krIViKi--Ggs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vviVssG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (236)
T d1ybda1 4 YKRVLLKL--SGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVM 81 (236)
T ss_dssp CSEEEEEE--CGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEE--CcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccccchhhHHHHHHHHH
Confidence 35778895 5677776666679999999999999999999999999999975555444433333333333333333334
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
....+...+...+......................+...++.+.+|++....+.+..+||++|+++|..++||.|+++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdnD~laa~vA~~~~ad~liilTd 161 (236)
T d1ybda1 82 NALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATN 161 (236)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCBSSSCEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHHHHhcCcchhhhhhhhhhhhhhhHHHHHHHhhhccCceeccccccccccccchHHHHHHHHHhCccceeeccC
Confidence 45555556777788777766665555555566677788889999999887766777889999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
||||||+||+.+|+|++++.++++|..+.|.+++|++|++.|.++|++++|+||++|++|.++++|+.+||+|.
T Consensus 162 VdGvy~~dP~~~~~a~~~~~~~~~e~~~~g~~~m~~~Aa~~a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh 235 (236)
T d1ybda1 162 VDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 235 (236)
T ss_dssp SSSCBSSCGGGCTTCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred ccchhhccccccccceeeccccHHHHHhcCchHHHHHHHHHHHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996
|
| >d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.95 E-value=2.5e-27 Score=244.87 Aligned_cols=234 Identities=36% Similarity=0.589 Sum_probs=181.8
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+|+|+|+ +|+.+...++..++.++++++|++|++++++|+++++|+|||..++.+.....+..........+.+...
T Consensus 4 ~krIViKi--Ggs~lt~~~~~~l~~~~l~~ia~~I~~l~~~g~~Vv~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (238)
T d1z9da1 4 YQRILIKL--SGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVM 81 (238)
T ss_dssp CSEEEEEE--CGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEE--CcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecccccccceeccccCCcchhHHHHHHHHHHH
Confidence 35788994 3444444455559999999999999999999999999999976555444444455555556666666666
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCC-CCCCcchHHHHHHHHHcCCcEEEEee
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG-NPFFTTDTTAALRAAEIKAEIILKAT 572 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G-~~~~s~D~lAa~lA~~L~Ad~liilT 572 (837)
...+.+..+..+|+..............................+++.....+ ....++|.+|+++|..++||.++++|
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~a~~~~a~~li~~t 161 (238)
T d1z9da1 82 NALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKN 161 (238)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHhhCCccchhhhhhhhHHHHhhhhHHHHHhhhccccccceecceeccCCCCchHHHHHHHHHhhhhhhcccc
Confidence 66666777889999887766655544333333333333344444444443322 33456999999999999999999999
Q ss_pred ccCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 573 KVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 573 DVdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
|||||||+||+.+++|++++.+++.+....|+|++|++|++.|.++|++++|+||++|++|.++++|+.+||+|+.+
T Consensus 162 dVdGvy~~~P~~~~~a~~~~~~~~~~~~~~g~~~~k~~Aa~~a~~~gi~v~I~nG~~p~~i~~~l~Ge~~GTlIt~~ 238 (238)
T d1z9da1 162 GVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK 238 (238)
T ss_dssp SCCSCBSSCTTTCTTCCBCSEEEHHHHHTTTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred cccceecccccccccchhhccccccchhccCcchhHHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCceEeccC
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999853
|
| >d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Glutamate 5-kinase species: Campylobacter jejuni [TaxId: 197]
Probab=99.94 E-value=1.3e-26 Score=242.49 Aligned_cols=222 Identities=17% Similarity=0.196 Sum_probs=164.2
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcc-hhhhcccccccCCCcchHHHHHHHHHH--
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGG-NICRGISNKIQNIDRSTADYMGMLATI-- 492 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG-~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 492 (837)
|+|+| .|+++++++. .++.+++.+++++|+++.+ |++++|||||| ...+..... ........+++++.
T Consensus 2 rIViK---lGGs~it~k~-~~~~~~l~~~~~~I~~l~~-~~~~vIV~gGa~~~G~~~~~~----~~~~~~~~~~~~~~g~ 72 (250)
T d2akoa1 2 RIVVK---VGSHVISEEN-TLSFERLKNLVAFLAKLME-KYEVILVTSAAISAGHTKLDI----DRKNLINKQVLAAIGQ 72 (250)
T ss_dssp EEEEE---ECHHHHBCSS-SBCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHCCC----CSSSHHHHHHHHHHHH
T ss_pred EEEEE---eccCeeeCCC-CcCHHHHHHHHHHHHHHHc-CCeEEEEEcCccccccccccc----ccchhhhhhhhhcccc
Confidence 46778 4555555543 6889999999999999975 78999998875 444433332 23334444444333
Q ss_pred -HHHHHHHHHHHHcCCceeEeehhchh---hhhhccchHHHHHHHhCCCEEEEeCCCCC-----CCCcchHHHHHHHHHc
Q psy13351 493 -INSLALFDILNKSGIISHVMSAISIE---KFLESYIPLNAIKYLEEGKVVIFAGGIGN-----PFFTTDTTAALRAAEI 563 (837)
Q Consensus 493 -~~~~ll~~~L~~~gi~a~~l~~~~~~---~~~~~~~~~~i~~ll~~g~VPVv~G~~G~-----~~~s~D~lAa~lA~~L 563 (837)
....++...|..+|..+......... ........+.+..+++.+.+||+++.... ...++|++|+++|..+
T Consensus 73 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ipv~~~~~~~~~~~~~~~~~D~~A~~lA~~~ 152 (250)
T d2akoa1 73 PFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFF 152 (250)
T ss_dssp HHHHHHHHHHHGGGTCCEEEEEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHHHT
T ss_pred hhHHHHHHHHhhhcccccccccccccchhhhhhhhhhhHHHHHHHHhCcccccccCccccccccccccchhhHHHHHHhc
Confidence 33445566788888887544322211 11222345678889999999999763211 1245999999999999
Q ss_pred CCcEEEEeeccCccccCCCCCCCCceeccccCH--HHHHH----------hccccchHHHHHHHHhCCCCEEEEEccCcc
Q psy13351 564 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSG 631 (837)
Q Consensus 564 ~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~ 631 (837)
+|++|+++||||||||+||+.+|+|++|+++++ ++..+ +|||..|+.|+..|.++|++|+|+||++|+
T Consensus 153 ~a~~li~~tdVdGVyd~dP~~~~~Ak~i~~It~~~~~~~~~~~~~~s~~~tGGM~~Kl~aa~~~~~~gi~v~I~nG~~~~ 232 (250)
T d2akoa1 153 DADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLS 232 (250)
T ss_dssp TCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred ccceeeeccCCCceeeCCCcccccccchhhccccchHHhhhhcccCCCCCCCchHHHHHHHHHHHHCCCCEEEecCCCcc
Confidence 999999999999999999999999999999986 33221 588999999999999999999999999999
Q ss_pred hHHHHHc-CCc-cceEE
Q psy13351 632 ALKRVIE-GKN-EGTLV 646 (837)
Q Consensus 632 ~i~~al~-Ge~-~GT~I 646 (837)
++.+++. |+. .||+|
T Consensus 233 ~l~~~l~~~~~~~GTv~ 249 (250)
T d2akoa1 233 VAKTFLLEDKQIGGTLF 249 (250)
T ss_dssp HHHHHHHSCCCCSSEEE
T ss_pred HHHHHHhCCCCCCceEe
Confidence 9999874 544 59998
|
| >d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Ribosome recycling factor, RRF family: Ribosome recycling factor, RRF domain: Ribosome recycling factor, RRF species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]
Probab=99.91 E-value=2.8e-26 Score=194.61 Aligned_cols=82 Identities=28% Similarity=0.408 Sum_probs=80.2
Q ss_pred CCCCccccceeEEEecccccccceeeeeeccCCceEEEecCC-cccHHHHHHHHHhcCCCccceecCCeeEEeCCCCCHH
Q psy13351 682 GRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKE 760 (837)
Q Consensus 682 gr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d-~~~~~~I~kaI~~s~l~~~p~~~~~~i~v~iP~~T~E 760 (837)
||+||++||+|+|+|||.++||+|+|+|+++++++|.|+||| +++++.|++||++||||+||+.||+.|||+||+||.|
T Consensus 1 Gra~p~lld~I~V~~yg~~~pL~qlA~Isv~~~~~l~I~~~D~~~~~~~i~kAI~~S~LglnP~~dG~~Iri~iP~lT~~ 80 (84)
T d1wiha_ 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG 80 (84)
T ss_dssp CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred CCCChHHcCceEEEECCCcccHHHHhhhhcCCCceEEEEEeecccccHHHHHHHHhcCCCCCcccCCCEEEEECCCCCCC
Confidence 899999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHH
Q psy13351 761 RRE 763 (837)
Q Consensus 761 ~R~ 763 (837)
.|+
T Consensus 81 ~~~ 83 (84)
T d1wiha_ 81 PSS 83 (84)
T ss_dssp SCC
T ss_pred cCC
Confidence 874
|
| >d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=1.9e-23 Score=223.59 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=170.9
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhc---cccccc-------CCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRG---ISNKIQ-------NIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~---~~~~~~-------~~~~~~~~ 484 (837)
+++|+|+ |++.+ .+++...+++++|+.|...|.++|||||||..... ...... -.++..++
T Consensus 27 ktiVIKl---GG~~l------~~~~~~~~~~~dIa~L~~~G~~vViVhGgg~~i~~~l~~~gi~~~~~~g~RvT~~~~l~ 97 (300)
T d2bufa1 27 KTLVIKY---GGNAM------ESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMD 97 (300)
T ss_dssp CEEEEEE---CCTTT------TSSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBSSSSBCBCHHHHH
T ss_pred CEEEEEE---ChHHh------CChhHHHHHHHHHHHHHHcCCcEEEecChHHHHHHHHHhcccCceecCCcccccchhHH
Confidence 5678884 43333 24566789999999999999999999999843322 112111 22566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------------------------hhccchHHHHHHHhCCC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------------------LESYIPLNAIKYLEEGK 537 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------------------------~~~~~~~~i~~ll~~g~ 537 (837)
...++..+..+..+.+.|...|++++++++.+...+ +..++.+.+..+++.|.
T Consensus 98 ~~~~~~~g~vn~~lv~~l~~~g~~a~~l~~~d~~~i~~~~~~~~~~~~~~~~~~~id~g~~G~v~~v~~~~i~~ll~~g~ 177 (300)
T d2bufa1 98 VVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDF 177 (300)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHhcCCcccccCCCccceEEeecccccccCcccccccccccCcccceeecchhHHHHHhcCCC
Confidence 777777777778888999999999999998775211 33367889999999999
Q ss_pred EEEEeC-C---CCCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccc
Q psy13351 538 VVIFAG-G---IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLE 605 (837)
Q Consensus 538 VPVv~G-~---~G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~ 605 (837)
|||+++ + .|.. ++++|.+|+.+|.+|+||+|+|+|||||||+.++ +++++++.+++.+ .|+|
T Consensus 178 Ipvis~~~~~~~G~~~nin~D~~Aa~lA~~L~AdkLI~Ltdv~Gv~~~~g------~~~~~l~~~~~~~li~~~~i~gGM 251 (300)
T d2bufa1 178 IPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQG------QVLTGLSTEQVNELIADGTIYGGM 251 (300)
T ss_dssp EEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCTTS------CBCCEECHHHHHHHHHTTCSCTTH
T ss_pred eEEecccccCcccchhcccHHHHHHHHHHHcCCCeEEEEcCCCccccCCC------cchhhccHHHHHHHHHcCCcCchH
Confidence 999987 1 1221 3669999999999999999999999999997654 4567777766654 5889
Q ss_pred cchHHHHHHHHhCCCC-EEEEEccCcchHH-HHHcCCccceEEEEe
Q psy13351 606 IMDSTAFSFCRDQKLP-IRVFSIIKSGALK-RVIEGKNEGTLVYEI 649 (837)
Q Consensus 606 v~~~~Aa~~a~~~gi~-v~I~ng~~~~~i~-~al~Ge~~GT~I~~~ 649 (837)
.+|+.||..|.+.|++ ++|+||..|+.|. ++++++.+||.|+++
T Consensus 252 ~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~~~ 297 (300)
T d2bufa1 252 LPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHcCCCCceeEEecC
Confidence 9999999999999996 9999999999876 567788899999875
|
| >d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=2.4e-23 Score=222.15 Aligned_cols=222 Identities=17% Similarity=0.214 Sum_probs=169.2
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhc---ccccc-------cCCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRG---ISNKI-------QNIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~---~~~~~-------~~~~~~~~~ 484 (837)
+++|+| .|+++++ +++.+.+++++|+.|++.|.++|||||||..... ..... +..++..++
T Consensus 26 ktiVIK---lGGsvl~------~~~~~~~l~~dia~L~~~G~~vVlVhGg~~~i~~~l~~~~~~~~~~~~~r~t~~~~~~ 96 (291)
T d2ap9a1 26 KVVVVK---YGGNAMT------DDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEVLD 96 (291)
T ss_dssp CEEEEE---ECTHHHH------SHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCCCSSSSCCBCHHHHH
T ss_pred CEEEEE---ECcHHhc------CHHHHHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHcCCCcccccccccCcHHHHH
Confidence 567788 4444443 4567889999999999999999999999733222 11111 112455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------------------hhccchHHHHHHHhCCCEEEEeC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------------LESYIPLNAIKYLEEGKVVIFAG 543 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------------------~~~~~~~~i~~ll~~g~VPVv~G 543 (837)
.+.++..+.....+.+.+...|..+.++++.+.... +..++...+..+++.|.|||+++
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~G~v~~v~~~~I~~ll~~g~ipvi~~ 176 (291)
T d2ap9a1 97 VARMVLFGQVGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVST 176 (291)
T ss_dssp HHHHHHHHTHHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEEES
T ss_pred HHHHhhhhHHHHHHHHHHHhcCCccccchhhhcccccccccccccccccccceeecccccchHHHHHHHHhcCCCcccCc
Confidence 666666666778888889999999988876654211 33456788999999999999998
Q ss_pred CCC-CC----CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-----hccccchHHHHH
Q psy13351 544 GIG-NP----FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFS 613 (837)
Q Consensus 544 ~~G-~~----~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-----~G~~v~~~~Aa~ 613 (837)
... .. +.++|.+|+.+|.+++||.|+|+|||||||+++|+.. ..++.++..++.+ .|+|.+|+.||.
T Consensus 177 ~~~~~~g~~~n~d~D~lAa~lA~~l~AdkLI~LTdv~Gv~~~~~~~~---~~~~~~~~~~~~~~~~~~~gGM~~Kl~aA~ 253 (291)
T d2ap9a1 177 LAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDRD---SLVSEIDTGTLAQLLPTLELGMVPKVEACL 253 (291)
T ss_dssp EEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTCTT---CEESEEEHHHHHHHGGGSCTTTHHHHHHHH
T ss_pred cccCCccccccccHHHHHHHHHHhcCCcEEEEeeccCcccccccccc---cccccCCHHHHHHHHhhhhCchHHHHHHHH
Confidence 321 11 3459999999999999999999999999999988654 3555666555544 689999999999
Q ss_pred HHHhCCCC-EEEEEccCcchHHH-HHcCCccceEEEE
Q psy13351 614 FCRDQKLP-IRVFSIIKSGALKR-VIEGKNEGTLVYE 648 (837)
Q Consensus 614 ~a~~~gi~-v~I~ng~~~~~i~~-al~Ge~~GT~I~~ 648 (837)
.|.++|++ |+|+||+.|+.|.. +++++.+||+|..
T Consensus 254 ~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~r 290 (291)
T d2ap9a1 254 RAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVR 290 (291)
T ss_dssp HHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEEC
T ss_pred HHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCceEEec
Confidence 99999997 99999999998875 6788889999974
|
| >d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=3.5e-23 Score=219.88 Aligned_cols=220 Identities=20% Similarity=0.164 Sum_probs=170.8
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc---cccc-------CCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS---NKIQ-------NIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~---~~~~-------~~~~~~~~ 484 (837)
+++|+| .|+++++ ++..+++++++|+.|...|.++|||||||....... .... -.+...++
T Consensus 22 k~iVIK---lGgsvi~------~~~~~~~l~~dIa~L~~~G~~iVlVhGg~~~~~~~l~~~~i~~~~~~~~~~t~~~~~~ 92 (282)
T d2btya1 22 KTFVIK---FGGSAMK------QENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTME 92 (282)
T ss_dssp CEEEEE---ECSHHHH------SHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCBSSSSBCBCHHHHH
T ss_pred CEEEEE---ECchHhC------ChhHHHHHHHHHHHHHHCCCeEEEEECCCccchhhHHHcCCcceeccCccccchhhHH
Confidence 567888 4554443 345788999999999999999999999984432211 1111 12444556
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhh----------------hhhccchHHHHHHHhCCCEEEEeCCC-CC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEK----------------FLESYIPLNAIKYLEEGKVVIFAGGI-GN 547 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~----------------~~~~~~~~~i~~ll~~g~VPVv~G~~-G~ 547 (837)
...+...+..+..+...|..+|++++++++.+... .+..++.+.+..+++.|.|||+++.. +.
T Consensus 93 ~~~~~~~~~~n~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~d~~~~g~~~~v~~~~i~~lL~~~~ipvi~~~~~~~ 172 (282)
T d2btya1 93 IVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGE 172 (282)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESEEECS
T ss_pred HHHHHHhchhhHHHHHHHHhcCCCeeeeeccccceeEeccccccccccccccccccChHHHHHHHhCCCceeecCcccCC
Confidence 66666667777788889999999999998865421 14556788999999999999999831 11
Q ss_pred C----CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHH
Q psy13351 548 P----FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCR 616 (837)
Q Consensus 548 ~----~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~ 616 (837)
. +.++|.+|+.+|..++||.|||+|||||||+ +.+++++++..++.. .|+|..|+.||..|.
T Consensus 173 ~g~~~nl~~d~~aa~iA~~l~AdkLI~ltdv~Gl~~-------d~~~i~~~~~~~~~~~~~~~~~tgGM~~Kl~aA~~A~ 245 (282)
T d2btya1 173 DGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLK-------DGKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAV 245 (282)
T ss_dssp SSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEE-------TTEECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHH
T ss_pred cceeeeccccchhHHHhhhcCCceeEEeccccceec-------CccccccCCHHHHHHHHHcCCcCchHHHHHHHHHHHH
Confidence 1 3559999999999999999999999999995 246788888777644 688999999999999
Q ss_pred hCCCC-EEEEEccCcchHHH-HHcCCccceEEEEee
Q psy13351 617 DQKLP-IRVFSIIKSGALKR-VIEGKNEGTLVYEIY 650 (837)
Q Consensus 617 ~~gi~-v~I~ng~~~~~i~~-al~Ge~~GT~I~~~~ 650 (837)
++|++ |+|+||..|+.|.. +++++.+||+|++.|
T Consensus 246 ~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I~~~e 281 (282)
T d2btya1 246 RGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKELE 281 (282)
T ss_dssp HTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCCC
T ss_pred HcCCCEEEEeCCCCCCHHHHHHhCCCCceEEEEeCC
Confidence 99997 99999999998865 567888999998754
|
| >d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.88 E-value=8.4e-23 Score=220.22 Aligned_cols=225 Identities=19% Similarity=0.166 Sum_probs=153.6
Q ss_pred HHHHHHHhhhhhhhccCCCcccc----ccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc------ccccCCCcch--
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNIN----SSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS------NKIQNIDRST-- 482 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~----~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~------~~~~~~~~~~-- 482 (837)
++||+| .|++.++.+....+ .+.+++++++|+.|++.|+++|||||||...-... ....+..+.+
T Consensus 2 KrIVIK---iGgs~l~~~~~~~~~~~~~~~l~~~~~~Ia~L~~~G~~vVlVhGGgpqi~~~l~~~~~~~~~~~~~~~~~~ 78 (313)
T d1e19a_ 2 KRVVIA---LGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQATYGIPAQPMD 78 (313)
T ss_dssp CEEEEE---CCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_pred CEEEEE---eChHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCCccccCCCcccccH
Confidence 356888 55555544433322 36799999999999999999999999983321111 1111111222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhch--------h----------------------------------
Q psy13351 483 --ADYMGMLATIINSLALFDILNKSGIISHVMSAISI--------E---------------------------------- 518 (837)
Q Consensus 483 --~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~--------~---------------------------------- 518 (837)
.........+.....+...+...+++....+.... .
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (313)
T d1e19a_ 79 VAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGR 158 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHhhHHHHhhhhhhHHHHhhccCceeehhhhhhHHHHHHhhcCceeeeccCc
Confidence 22222333333444556666677765433221110 0
Q ss_pred ---------hhhhccchHHHHHHHhCCCEEEEeCCC------------CCC-CCcchHHHHHHHHHcCCcEEEEeeccCc
Q psy13351 519 ---------KFLESYIPLNAIKYLEEGKVVIFAGGI------------GNP-FFTTDTTAALRAAEIKAEIILKATKVDG 576 (837)
Q Consensus 519 ---------~~~~~~~~~~i~~ll~~g~VPVv~G~~------------G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdG 576 (837)
......+...+..+++++.+|++.+.. |.. ++++|++|+.+|.+++||.|+|+|||||
T Consensus 159 ~~~~~v~~~~~~~~v~~~~i~~~~~~~~i~vl~~~~~~~v~~~~~~~~G~~~ninaD~lAa~vA~~l~Ad~LIlLTdv~G 238 (313)
T d1e19a_ 159 GWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNG 238 (313)
T ss_dssp CEEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred cceeeccCCCceeEecccceeeccccchhhhhccCCCCCccccCCCcCceEEecchhHHHHHHHHHHHHHHHHhccCCcc
Confidence 001124567889999999999987621 222 4569999999999999999999999999
Q ss_pred cccCCCCCCCCceeccccCHHHHHH--------hccccchHHHHHHHHhCCC-CEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 577 IYNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 577 Vy~~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~~a~~~gi-~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
||+++|+ +++++|++++.+++.+ .|+|.+|+.||..|.+.|+ +|+|.+ ++.+.++++|+ .||+|.
T Consensus 239 v~~~~~~--~~~~~i~~l~~~e~~~li~~g~~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~---~~~i~~~l~g~-~GT~i~ 312 (313)
T d1e19a_ 239 AALYYGT--EKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAH---LEKAVEALEGK-TGTQVL 312 (313)
T ss_dssp CEETTTS--TTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEE---GGGHHHHHTTS-SSEEEE
T ss_pred eeccCCC--cccceeeeCCHHHHHHHhhCCCcccCChHHHHHHHHHHHHhCCCEEEECC---hHHHHHHHCCC-CCCEEc
Confidence 9998775 6789999999888765 5789999999987777776 466644 56799999996 799998
Q ss_pred E
Q psy13351 648 E 648 (837)
Q Consensus 648 ~ 648 (837)
|
T Consensus 313 P 313 (313)
T d1e19a_ 313 P 313 (313)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.6e-22 Score=215.30 Aligned_cols=157 Identities=24% Similarity=0.270 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhh-----hcc--------chHHHHHHHhCCCEEEEeCCCCCC-
Q psy13351 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFL-----ESY--------IPLNAIKYLEEGKVVIFAGGIGNP- 548 (837)
Q Consensus 483 ~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~-----~~~--------~~~~i~~ll~~g~VPVv~G~~G~~- 548 (837)
.+.+...+..+++.+|+.+|+..|+++..+++.++.... ... ....+...+.. .|||++||.|..
T Consensus 109 ~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~i~Vv~GFig~~~ 187 (292)
T d2j0wa1 109 TDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNE-GLVITQGFIGSEN 187 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCTTSCCBCHHHHHHHHHHHTHHHHHH-SEEEEESSEEECT
T ss_pred HHHHHhhhHHHhHHHHHHHHHhcCCCccccchhheeecCCccccccchhhhhhhhhhhhhhhhhcc-ccccccccccccc
Confidence 344444445558999999999999999999988762210 011 11223333344 589999988743
Q ss_pred -C-Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHh
Q psy13351 549 -F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRD 617 (837)
Q Consensus 549 -~-~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~ 617 (837)
+ .+ +|++|+.+|.+|+|+.+.+||||||||++||+..|+|++|++++|+|+.+ +|++++||.|+.+|.+
T Consensus 188 ~G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taDP~~v~~A~~i~~lsy~EA~ela~~GakVlhp~ti~p~~~ 267 (292)
T d2j0wa1 188 KGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVR 267 (292)
T ss_dssp TSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHH
T ss_pred CCceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeechhhcCCCceEcceeCHHHHHHHHhCCccccCHHHHHHHHH
Confidence 2 22 99999999999999999999999999999999999999999999999988 8999999999999999
Q ss_pred CCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 618 QKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 618 ~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
+|||++|.|.++|+ ..||+|+++
T Consensus 268 ~~Ipi~i~nt~~p~---------~~GT~I~~~ 290 (292)
T d2j0wa1 268 SDIPVFVGSSKDPR---------AGGTLVCNK 290 (292)
T ss_dssp HTCCEEEEESSCTT---------SCCEEEESC
T ss_pred cCCcEEEeeCCCCC---------CCCCeEecC
Confidence 99999999999984 689999865
|
| >d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=99.88 E-value=2.5e-22 Score=214.52 Aligned_cols=157 Identities=23% Similarity=0.298 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh----------hhccchHHHHHHHhCCCEEEEeCCCCCC--CC-
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF----------LESYIPLNAIKYLEEGKVVIFAGGIGNP--FF- 550 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~----------~~~~~~~~i~~ll~~g~VPVv~G~~G~~--~~- 550 (837)
|.+...+..+++.+|+.+|+..|+++..+.+.++... ......+.+..++..+.|||++||.|.. +.
T Consensus 122 D~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~v~Vv~GFig~~~~G~~ 201 (302)
T d2hmfa1 122 DYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYI 201 (302)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTCCEEEECTTTTTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEECTTCCE
T ss_pred HHHhhhhhhHHhHHHHHHHHHcCCceEEeeccccccccCCccchhhhhhhhhHHHHHHHHhcCCeEEeecccccCCCCCE
Confidence 3344444445899999999999999999988775221 1111235677888999999999988743 21
Q ss_pred c------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 551 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 551 s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+ +|++|+.+|.+|+|+.+.+||||||||++||+.+|+|++++.++|+|+.+ .|++++||.|+.+|.++|+|
T Consensus 202 ttLgRgGSD~tA~~la~~l~A~~~~i~tdv~gi~~~dP~~~~~a~~~~~~~y~ea~eLa~~g~~v~h~~~~~~~~~~~i~ 281 (302)
T d2hmfa1 202 TTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIP 281 (302)
T ss_dssp EECCTTTHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHTTCC
T ss_pred EEEeccCcccHHHHHHHHhccHHHHHHhccchhccchhhcCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHcCCC
Confidence 1 99999999999999999999999999999999999999999999999987 79999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++|.|..+| +.+||+|+++
T Consensus 282 i~v~~~~~~---------~~~gT~i~~~ 300 (302)
T d2hmfa1 282 ILVKNTFEP---------ESEGTLITND 300 (302)
T ss_dssp EEEEETTST---------TSCCEEEESC
T ss_pred EEEeeCCCC---------CCCCCEEcCC
Confidence 999999887 3689999865
|
| >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.87 E-value=4.2e-22 Score=212.95 Aligned_cols=160 Identities=20% Similarity=0.265 Sum_probs=132.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------h-----hccchHHHHHHHhCCCEEEEeCCCC
Q psy13351 481 STADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------L-----ESYIPLNAIKYLEEGKVVIFAGGIG 546 (837)
Q Consensus 481 ~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~-----~~~~~~~i~~ll~~g~VPVv~G~~G 546 (837)
...+.+...+..+++.+++.+|...|+++..+.+.+.... . .......+..+++.+.|||++||.|
T Consensus 114 ~~~D~ils~GE~lSa~ll~~~L~~~gi~a~~~d~~~~~iit~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~v~vv~Gfig 193 (304)
T d2cdqa1 114 RTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLG 193 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEE
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHcCCceEEEeecccccccccccccccccccchhhhHHHHhhhhhccCcEEEeecccc
Confidence 3345555555556899999999999999999988875211 0 0111234556678999999999876
Q ss_pred C---CCCc-------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHH
Q psy13351 547 N---PFFT-------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFS 613 (837)
Q Consensus 547 ~---~~~s-------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~ 613 (837)
. .+.. +|++|+.+|.+|+|+.+.+||||||||++||+.+|+|++|++++|+|+.+ +|++++||.|+.
T Consensus 194 ~~~~~G~~ttLGRgGSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~v~~a~~i~~lsy~EA~ela~~GakvlHp~ti~ 273 (304)
T d2cdqa1 194 KGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMR 273 (304)
T ss_dssp EETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHH
T ss_pred ccCcCCceeeeccCccccHHHHHHHHhCchHHHHhcCcchheeccccccCCceEcCccCHHHHHHHHhCCCcccCHHHHH
Confidence 3 2322 99999999999999999999999999999999999999999999999988 799999999999
Q ss_pred HHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 614 FCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 614 ~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++.+.+||++|.|.++|+ .+||+|+++
T Consensus 274 p~~~~~Ipi~i~nt~~p~---------~~GT~I~~~ 300 (304)
T d2cdqa1 274 PAREGEIPVRVKNSYNPK---------APGTIITKT 300 (304)
T ss_dssp HHHHHTCCEEEEETTSTT---------SCCEEEESC
T ss_pred HHHHCCCcEEEecCCCCC---------CCCCEEeCC
Confidence 999999999999999984 689999865
|
| >d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.87 E-value=1e-22 Score=184.35 Aligned_cols=96 Identities=26% Similarity=0.359 Sum_probs=84.6
Q ss_pred ccccCCCeeEEEEeCCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh--------------hhcccccCC
Q psy13351 264 NRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ--------------LNNLKIKNN 329 (837)
Q Consensus 264 ~r~~~eG~i~~y~~~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~--------------l~q~~i~d~ 329 (837)
||.|+||+|++|.+++.||||||||||||||||+.|++|+++||+++++..|...+. .++++..++
T Consensus 1 GR~a~EG~I~i~~~~~~~~ivElNcETDFVArn~~F~~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (111)
T d1xb2b2 1 GRKTKEGLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELPAGPER 80 (111)
T ss_dssp TSCCCEEEEEEEEETTEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSBCCSSS
T ss_pred CccccccEEEEEeCCCeEEEEEEecccchhhccHHHHHHHHHHHHHHHHcCcchHHHHhhhhhhhhcccchhhhhccccC
Confidence 799999999999999999999999999999999999999999999999876643322 234555567
Q ss_pred CccHHHHHHHHHHhhCCceEEEEEEEEeeC
Q psy13351 330 LLTVDEKCKELISRIGENIKIRRFKLFKTN 359 (837)
Q Consensus 330 ~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g 359 (837)
+.||+|.+.++++++||||+|+||.+|+..
T Consensus 81 ~~tv~d~i~~~ia~iGEnI~lrR~~~~~~p 110 (111)
T d1xb2b2 81 EGSLKDQLALAIGKLGENMILKRAAWVKVP 110 (111)
T ss_dssp CSBHHHHHHHHHHHHCSCEEEEEEEEEECC
T ss_pred CCcHHHHHHHHhhhhCCCEEEEEEEEEecC
Confidence 889999999999999999999999999753
|
| >d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=1.6e-21 Score=183.47 Aligned_cols=94 Identities=40% Similarity=0.674 Sum_probs=88.5
Q ss_pred cCCCeeEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh------------------------
Q psy13351 267 AKDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ------------------------ 320 (837)
Q Consensus 267 ~~eG~i~~y~~--~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~------------------------ 320 (837)
+.||+|++|+| +++||||+++|++||+++|+.|++|+++||||+||++|.+++.
T Consensus 1 a~eG~v~~YiH~~gkigvlv~l~~~~d~~~~~~~~~~~ak~iAmhiaA~~P~~i~~~~v~~~~i~~E~ei~~~~~~~~gK 80 (142)
T d1tfea_ 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGK 80 (142)
T ss_dssp CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCEEEEEEcCCCcEEEEEEEEeccchhhhhhHHHHHHHHHHhhhhhcCcccCChhHCCHHHHHHHHHHHHHHhhcccc
Confidence 46899999999 6999999999999999999999999999999999999986553
Q ss_pred ----------------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCC
Q psy13351 321 ----------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN 360 (837)
Q Consensus 321 ----------------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~ 360 (837)
++|+|++|+++||+|++++..+++|++|+|++|+||++|.
T Consensus 81 P~~i~ekIv~Gk~~Kf~~E~~LleQ~fv~D~~~tV~~~l~~~~~~~g~~i~i~~F~R~~vG~ 142 (142)
T d1tfea_ 81 PQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA 142 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcccCCCccHHHHHHHHHHhcCCCcEEEEEEEEEecC
Confidence 7899999999999999999999999999999999999873
|
| >d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=9.2e-21 Score=161.71 Aligned_cols=84 Identities=36% Similarity=0.602 Sum_probs=79.0
Q ss_pred ccCCCeeEEEEeCCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhhhhcccccCCCccHHHHHHHHHHhhC
Q psy13351 266 NAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIG 345 (837)
Q Consensus 266 ~~~eG~i~~y~~~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~i~d~~~tv~~~~~~~~~~~g 345 (837)
+++||+|++|++++.|+||||||||||||||++|++|++++++++++.+|.+++.+. .|++|.+.++++++|
T Consensus 1 vA~EG~I~~~~~~~~~~ivEvncETDFVAkne~F~~l~~~i~~~~~~~~~~~~~~~~--------~~v~e~~~~~iakiG 72 (85)
T d1efub4 1 VAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLK--------AQFEEERVALVAKIG 72 (85)
T ss_dssp CCCEEEEEEEEETTEEEEEEEEESCHHHHTCHHHHHHHHHHHHHHHHTTCCCHHHHH--------HHHHHHHHHHHHHHC
T ss_pred CccceEEEEEEcCCeEEEEEEeccCcchhcchHHHHHHHHHHHHHHhcCcccHHHHh--------chHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999999998887764 389999999999999
Q ss_pred CceEEEEEEEEe
Q psy13351 346 ENIKIRRFKLFK 357 (837)
Q Consensus 346 e~i~l~rf~~~~ 357 (837)
|||+|+||.+++
T Consensus 73 EnI~irR~~~~e 84 (85)
T d1efub4 73 ENINIRRVAALE 84 (85)
T ss_dssp SCCEEEEEEEEE
T ss_pred CCEEEeEEEEee
Confidence 999999999986
|
| >d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Enterococcus faecium [TaxId: 1352]
Probab=99.83 E-value=5.4e-21 Score=205.34 Aligned_cols=225 Identities=15% Similarity=0.081 Sum_probs=147.4
Q ss_pred HHHHHHhhhhhhhccC-CCccccccchhhhhhhhHHhhhcCceEEEEeCcchh----hhcccccccCC-CcchHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNI----CRGISNKIQNI-DRSTADYMGML 489 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g-~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~----~~~~~~~~~~~-~~~~~~~~~~~ 489 (837)
++|+|+ +|+++... .+...+.+.+++++++|+.|++.|+++|||||||.. +.........+ .....+.....
T Consensus 3 ~iVIK~--GGsal~~~~~~~~~~~~~l~~~~~~Ia~L~~~G~~vViVHGGgpqi~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (307)
T d1b7ba_ 3 KMVVAL--GGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTCVAM 80 (307)
T ss_dssp EEEEEE--CHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTCSSSSCCCCHHHHHHH
T ss_pred EEEEEE--ChhhhCCCCCCchHHHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcCCCCcccccccccchHHHH
Confidence 467884 44555543 344466789999999999999999999999999843 22222221111 11122111111
Q ss_pred HHHHHHH----HHHHHHHHcCC------------------------ceeEeehhchh-----------------------
Q psy13351 490 ATIINSL----ALFDILNKSGI------------------------ISHVMSAISIE----------------------- 518 (837)
Q Consensus 490 ~~~~~~~----ll~~~L~~~gi------------------------~a~~l~~~~~~----------------------- 518 (837)
....... ........... .++++.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (307)
T d1b7ba_ 81 TQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWRKVV 160 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHTTTCCEEEETTTEEEEEE
T ss_pred HHHHHHHHHhhhhHHHHhhcccchhhhhhhhhhhHHHHHHHHHccCcceeeecccchHHHHHHhhcceeccccccceeec
Confidence 1111111 11111112222 22332221110
Q ss_pred ---hhhhccchHHHHHHHhCCCEEEEeCC----------CCCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCC
Q psy13351 519 ---KFLESYIPLNAIKYLEEGKVVIFAGG----------IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNK 584 (837)
Q Consensus 519 ---~~~~~~~~~~i~~ll~~g~VPVv~G~----------~G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~ 584 (837)
......+...+...+..+.+|++.+. .|.. ++++|++|+.+|..|+||+|+|+|||||||+++|+
T Consensus 161 ~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~ninaD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~- 239 (307)
T d1b7ba_ 161 PSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGK- 239 (307)
T ss_dssp CCCCEEEETTHHHHHHHHHTTEEEECSGGGCEEEETTTTEECSCCCCHHHHHHHHHHHHTCSEEEEECSSSSCEETTTS-
T ss_pred CcCceeeeechhhhhhhhhcCceeeccCCccccccccCCCCcEEecchhHHHHHHHHHhhhhheeeccccCceeeCCCc-
Confidence 00112356778888999999987541 1122 45699999999999999999999999999999886
Q ss_pred CCCceeccccCHHHHHH--------hccccchHHHHHHHHhCCCC-EEEEEccCcchHHHHHcCCccceEE
Q psy13351 585 CLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGALKRVIEGKNEGTLV 646 (837)
Q Consensus 585 ~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~~a~~~gi~-v~I~ng~~~~~i~~al~Ge~~GT~I 646 (837)
|+.++++.++.+|+.+ .|||.+|+.||..|.++|+. ++|+++ ++.+.+++.|+.+||.|
T Consensus 240 -~~~~~i~~l~~~e~~~l~~~g~~~~GGM~pKl~aA~~al~~Gv~~~~ii~~--~~~l~~l~~~~~~GT~I 307 (307)
T d1b7ba_ 240 -PDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS--LENLGSMSGDEIVGTVV 307 (307)
T ss_dssp -TTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHTTSTTCEEEEEC--HHHHTTCSSCSCEEECC
T ss_pred -ccccccccCCHHHHHHHHHCCCcccCChHHHHHHHHHHHHcCCCeEEEECC--HHHHHHHHcCCCCCCCC
Confidence 6778899999887755 58899999999999999985 677765 45677888899999986
|
| >d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=2e-17 Score=171.53 Aligned_cols=216 Identities=17% Similarity=0.158 Sum_probs=155.0
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCce-EEEEeCcchhhhcccccc---cC-------CCcchHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIE-LAIVIGGGNICRGISNKI---QN-------IDRSTAD 484 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~-vVIVhGGG~~~~~~~~~~---~~-------~~~~~~~ 484 (837)
++|+| .|++.++ +++.+++++++|+.+++.|++ +|||||||.....+.... .. .+.....
T Consensus 4 ~IVIK---iGgs~lt------~~~~~~~~~~~ia~l~~~g~~~vvvvhG~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 74 (258)
T d1gs5a_ 4 PLIIK---LGGVLLD------SEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQID 74 (258)
T ss_dssp CEEEE---ECGGGGG------CHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHH
T ss_pred CEEEE---ECchhcc------CHHHHHHHHHHHHHHHHCCCceEEEECCCchhhhcchhhhccccccccccchhhHHHHH
Confidence 46788 4555543 356789999999999999977 788999975433222211 11 1233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh--------------hhccchHHHHHHHhCCCEEEEeCCCC-CC-
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF--------------LESYIPLNAIKYLEEGKVVIFAGGIG-NP- 548 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~--------------~~~~~~~~i~~ll~~g~VPVv~G~~G-~~- 548 (837)
....+..+.....+...+...|.++...+....... ....+...+...++.+.+|++.+... ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~v~~~~~~~~~~ 154 (258)
T d1gs5a_ 75 IITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEG 154 (258)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHhccCccccccccccccccccccccccccccccccccccchHHHHHhccccccccccccccCC
Confidence 445555555666677778888998877776543211 22345678889999999999987211 11
Q ss_pred ---CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhC
Q psy13351 549 ---FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQ 618 (837)
Q Consensus 549 ---~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~ 618 (837)
...+|.+|+.+|..++|+.+ ++||++|+|..++... +.+...+... .|||..|+.||..|.++
T Consensus 155 ~~~~~~~~~~a~~~a~~l~a~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~ 227 (258)
T d1gs5a_ 155 QLMNVNADQAATALAATLGADLI-LLSDVSGILDGKGQRI------AEMTAAKAEQLIEQGIITDGMIVKVNAALDAART 227 (258)
T ss_dssp CEEECCHHHHHHHHHHHHTCEEE-EEESSSSCBCTTSCBC------CEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHH
T ss_pred cEEEechhhhhhhHHHHHHhhhh-hhcccccccccccccc------cccchHHHHHHHhCCcccchHHHHHHHHHHHHHc
Confidence 24499999999999999875 5799999998766532 2333333322 68899999999999999
Q ss_pred CCC-EEEEEccCcchHHHHHcCCccceEEE
Q psy13351 619 KLP-IRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 619 gi~-v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|++ |+|+||+.|+.|.++++|+.+||+|.
T Consensus 228 Gv~~v~I~~g~~~~~L~~l~~g~~~GT~i~ 257 (258)
T d1gs5a_ 228 LGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred CCCEEEEEeCCCchHHHHHhcCCCCceEEe
Confidence 985 89999999999999999999999985
|
| >d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: TS-N domain domain: Elongation factor Ts (EF-Ts), N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=2e-17 Score=124.90 Aligned_cols=49 Identities=31% Similarity=0.331 Sum_probs=47.4
Q ss_pred cchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhccc
Q psy13351 217 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNR 265 (837)
Q Consensus 217 ~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r 265 (837)
.+||+||++||+||++||+||+++|||+|+|++|||++|.++|.||++|
T Consensus 4 elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~Lr~~G~~kA~Kk~~R 52 (52)
T d1aipc1 4 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADR 52 (52)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHhcCC
Confidence 4689999999999999999999999999999999999999999999987
|
| >d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: TS-N domain domain: Elongation factor Ts (EF-Ts), N-terminal domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.64 E-value=2.7e-17 Score=125.88 Aligned_cols=52 Identities=31% Similarity=0.346 Sum_probs=49.3
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccc
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRN 266 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~ 266 (837)
...+|++||++||+||++||+||.++|||+|+|++|||++|.++|.||++|+
T Consensus 4 s~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~LrkkG~a~a~kKa~Rl 55 (56)
T d1xb2b1 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARL 55 (56)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3457899999999999999999999999999999999999999999999986
|
| >d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=7.3e-17 Score=150.01 Aligned_cols=75 Identities=36% Similarity=0.585 Sum_probs=66.2
Q ss_pred CeEEEEeeCCeEEEEEEecCCChhHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhccCCCcccccc
Q psy13351 360 NNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSS 439 (837)
Q Consensus 360 ~~i~~Y~H~~~~~~~v~~~~~~~~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~g~~~~i~~~ 439 (837)
+.+|+|+|+|||||||.+++.++++|++||||||||+|.++++++||++++++|++++..++.. +|+|..+-++
T Consensus 1 ~vi~sYiH~gkigvlV~~~~~~~e~ak~iAMHIAA~~P~~l~~~~vp~~~i~kE~~i~~~q~~~------~gKPe~i~eK 74 (143)
T d1efub2 1 DVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQ------SGKPKEIAEK 74 (143)
T ss_dssp SEEEEEEETTTEEEEEEEESCCHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHH------TTCCHHHHHH
T ss_pred CeEEEEecCCEEEEEEEecCccHHHHHHHHHHHhccCCcccccccCCHHHHHHHHHHhHhhhhc------ccchHHHHHH
Confidence 3589999999999999999999999999999999999999999999999999999988888532 3788765554
Q ss_pred c
Q psy13351 440 I 440 (837)
Q Consensus 440 ~ 440 (837)
+
T Consensus 75 I 75 (143)
T d1efub2 75 M 75 (143)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: TS-N domain domain: Elongation factor Ts (EF-Ts), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=7.2e-17 Score=122.76 Aligned_cols=50 Identities=42% Similarity=0.470 Sum_probs=47.5
Q ss_pred ccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhccc
Q psy13351 216 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNR 265 (837)
Q Consensus 216 g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r 265 (837)
..+||+||++||+||++||+||.+++||+|+|++|||++|.++|.||+|.
T Consensus 5 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~Lr~kG~~~A~Kk~Gn 54 (54)
T d1efub3 5 ASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGN 54 (54)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHhcCC
Confidence 45789999999999999999999999999999999999999999999873
|
| >d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.61 E-value=3.8e-16 Score=139.59 Aligned_cols=82 Identities=12% Similarity=0.284 Sum_probs=71.3
Q ss_pred CeeEEEEe-------------CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh-------------hhc
Q psy13351 270 GVIAIYIS-------------EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ-------------LNN 323 (837)
Q Consensus 270 G~i~~y~~-------------~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~-------------l~q 323 (837)
+.|++|+| ||+||||+++++.+ ++.+.+|+++|||||||++|.++.+ ++|
T Consensus 2 ~~igsYiHg~~~~~~~~~~~lGkig~lv~~~~~~~----~~~~~~l~k~iAmhIaA~~P~~i~~~~~~~~~~~E~~Ll~Q 77 (109)
T d1xb2b3 2 FYVGSYVHGAMHSPSLHNLVLGKYGALVICETSEL----KANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQ 77 (109)
T ss_dssp EEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSC----GGGCHHHHHHHHHHHHHHCCSBCCCTTSCCCGGGCCBGGGS
T ss_pred CEEEEEeCCCcccccccccccccEEEEEEEccCCC----ccCHHHHHHHHHHHHHhcCCcccCccccccccchhheeccc
Confidence 57999999 48999999988643 3456789999999999999987643 889
Q ss_pred ccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCe
Q psy13351 324 LKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNN 361 (837)
Q Consensus 324 ~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~ 361 (837)
+|++|+++||+|+|++ ++++|.+|+||++|||
T Consensus 78 ~fvkD~~~tV~~~l~~------~~i~v~~F~Rf~vGEG 109 (109)
T d1xb2b3 78 PYLLDPSITLGQYVQP------HGVSVVDFVRFECGEG 109 (109)
T ss_dssp BCTTCTTSBHHHHHGG------GTCEEEEEEEEETTCC
T ss_pred ccccCCccCHHHHHHH------CCCEEEEEEEEEecCC
Confidence 9999999999999975 5799999999999986
|
| >d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=7.8e-16 Score=142.98 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=68.6
Q ss_pred eeEEEEe-CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh-----------------------------
Q psy13351 271 VIAIYIS-EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ----------------------------- 320 (837)
Q Consensus 271 ~i~~y~~-~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~----------------------------- 320 (837)
+|++|+| ||+||||+++|+++ +|+++|||||||++|.+++.
T Consensus 2 vi~sYiH~gkigvlV~~~~~~~---------e~ak~iAMHIAA~~P~~l~~~~vp~~~i~kE~~i~~~q~~~~gKPe~i~ 72 (143)
T d1efub2 2 VLGSYQHGARIGVLVAAKGADE---------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIA 72 (143)
T ss_dssp EEEEEEETTTEEEEEEEESCCH---------HHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred eEEEEecCCEEEEEEEecCccH---------HHHHHHHHHHhccCCcccccccCCHHHHHHHHHHhHhhhhcccchHHHH
Confidence 6899999 79999999999753 68999999999999986544
Q ss_pred -----------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeE
Q psy13351 321 -----------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL 362 (837)
Q Consensus 321 -----------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i 362 (837)
|+|+|++|+++||+|++++ .+++|.+|+||++||||
T Consensus 73 eKIveGkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~~------~~~~v~~FvRfevGEGi 125 (143)
T d1efub2 73 EKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKE------HNAEVTGFIRFEVGEGI 125 (143)
T ss_dssp HHHHHHHHHHHHHHHBTTTSEETTEEEEEHHHHHHT------TTCEEEEEEEEETTTTS
T ss_pred HHHHHHHHHHHHHhhhhcccccccCCceeHHHHHHh------CCCEEEEEEEEEecCce
Confidence 7899999999999999975 46899999999999997
|
| >d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=9e-14 Score=130.04 Aligned_cols=83 Identities=34% Similarity=0.595 Sum_probs=67.1
Q ss_pred CeEEEEeeC-CeEEEEEEecCCCh---------hHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhc
Q psy13351 360 NNLISYLHD-NKIGVIVEYNGDNE---------SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALM 429 (837)
Q Consensus 360 ~~i~~Y~H~-~~~~~~v~~~~~~~---------~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~ 429 (837)
+.+++|+|+ ||+||||.+++..+ +++++|||||||++|.++++++||++++++|++++..++..
T Consensus 4 G~v~~YiH~~gkigvlv~l~~~~d~~~~~~~~~~~ak~iAmhiaA~~P~~i~~~~v~~~~i~~E~ei~~~~~~~------ 77 (142)
T d1tfea_ 4 GIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALN------ 77 (142)
T ss_dssp EEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHT------
T ss_pred CEEEEEEcCCCcEEEEEEEEeccchhhhhhHHHHHHHHHHhhhhhcCcccCChhHCCHHHHHHHHHHHHHHhhc------
Confidence 369999996 59999999987653 58899999999999999999999999999999998888633
Q ss_pred cCCCccccccc----hhhhhhhh
Q psy13351 430 KGDAYNINSSI----IKNIISEI 448 (837)
Q Consensus 430 ~g~~~~i~~~~----i~~la~~I 448 (837)
+|+|..+-+++ ++++..++
T Consensus 78 ~gKP~~i~ekIv~Gk~~Kf~~E~ 100 (142)
T d1tfea_ 78 EGKPQQIAEKIAEGRLKKYLEEV 100 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHh
Confidence 47887665443 44444444
|
| >d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: EF-Ts domain-like superfamily: Elongation factor Ts (EF-Ts), dimerisation domain family: Elongation factor Ts (EF-Ts), dimerisation domain domain: Elongation factor Ts (EF-Ts), dimerisation domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=98.90 E-value=3.6e-10 Score=100.32 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=40.9
Q ss_pred CCeEEEEeeC------------CeEEEEEEecCCC-----hhHHHHHHhhhhccCccccCcCcCc
Q psy13351 359 NNNLISYLHD------------NKIGVIVEYNGDN-----ESAVKDVAMHIAAMKPIALSSDQIP 406 (837)
Q Consensus 359 g~~i~~Y~H~------------~~~~~~v~~~~~~-----~~~~~~iamhi~a~~p~~l~~~~vp 406 (837)
|..||+|+|+ ||+|+||.++++. ++++|+||||||||+|.++++.+..
T Consensus 1 G~~igsYiHg~~~~~~~~~~~lGkig~lv~~~~~~~~~~~~~l~k~iAmhIaA~~P~~i~~~~~~ 65 (109)
T d1xb2b3 1 GFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDDE 65 (109)
T ss_dssp TEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSCGGGCHHHHHHHHHHHHHHCCSBCCCTTSC
T ss_pred CCEEEEEeCCCcccccccccccccEEEEEEEccCCCccCHHHHHHHHHHHHHhcCCcccCccccc
Confidence 5679999997 5999999997753 4789999999999999999876543
|
| >d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: Cbl-interacting protein p70, STS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.46 E-value=0.013 Score=43.19 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=24.6
Q ss_pred cCCChHHHHHHHHHhhc-cHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANG-KLSKAEEILR 252 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~-d~~~A~~~Lr 252 (837)
-|.+...|++||..++| |+|.|.+||-
T Consensus 22 MGF~~~~a~~AL~~t~n~~ve~A~~WLl 49 (51)
T d2cpwa1 22 MGFPRARAQKALASTGGRSVQTACDWLF 49 (51)
T ss_dssp HTCCHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 47899999999999987 9999999994
|
| >d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: Ubiquitin-associated protein 1, UBAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=0.012 Score=45.57 Aligned_cols=29 Identities=7% Similarity=-0.044 Sum_probs=26.9
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
-|.+..+|++||..++||++.|++||-..
T Consensus 29 MGF~~~~a~~AL~~~~~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 29 MGYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 47899999999999999999999999875
|
| >d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: DNA repair protein Hhr23a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.0063 Score=42.81 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=24.8
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEIL 251 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~L 251 (837)
-|.+..+|++||..++||+|.|++||
T Consensus 14 MGF~~~~a~~AL~~~~~N~e~A~~~L 39 (41)
T d1oqya1 14 MGYERERVVAALRASYNNPHRAVEYL 39 (41)
T ss_dssp TTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 58899999999999999999999998
|
| >d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: Tudor domain containing protein 3, TDRD3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.018 Score=44.44 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=27.5
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
-|.+...|++||..++||++.|++||-+..
T Consensus 19 MGF~~~~a~~AL~~~~~~~e~A~~wL~~~~ 48 (63)
T d1wjia_ 19 MGFSKEASRQALMDNGNNLEAALNVLLTSN 48 (63)
T ss_dssp TTCCHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 478999999999999999999999998863
|
| >d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: Rhomboid family protein At3g58460 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.03 E-value=0.03 Score=44.52 Aligned_cols=29 Identities=28% Similarity=0.173 Sum_probs=26.4
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
-|++...|++||..++||+|.|++||-..
T Consensus 39 MGF~~~~a~~AL~~~~~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 39 MGFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp TTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 57899999999999999999999999653
|
| >d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: Ubiquitin isopeptidase T species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.57 E-value=0.038 Score=43.88 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=26.7
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
-|.+...|++||..++||++.|++||-..
T Consensus 39 MGF~~~~a~~AL~~~~~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 39 FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 47899999999999999999999999764
|
| >d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: Ubiquilin-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.063 Score=37.41 Aligned_cols=34 Identities=32% Similarity=0.311 Sum_probs=27.3
Q ss_pred hhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 220 GELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 220 ~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+||..-=.....|-.||..++||+++|++.|.+
T Consensus 7 ~~L~~MGF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~ 40 (41)
T d2daha1 7 EQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ 40 (41)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3455544456778999999999999999999975
|
| >d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SIS domain superfamily: SIS domain family: mono-SIS domain domain: Phosphoheptose isomerase GmhA1 species: Vibrio cholerae [TaxId: 666]
Probab=91.66 E-value=0.8 Score=42.86 Aligned_cols=133 Identities=10% Similarity=0.039 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHH---HHHHHHHcCCCcccCcccCCCCCChHHHHHHHHHHHHHHHH
Q psy13351 36 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGV---IANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLF 112 (837)
Q Consensus 36 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~---v~~~a~~~~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~ 112 (837)
+.....+.+|+..+.....++|+|+|.|+...+... ...+........-.-.|+. ++|...+....
T Consensus 24 ~~~~~~I~~aa~~i~~~~~~~~kI~~~G~GgSa~~A~h~a~~~~~~~~~~~~~~~~~~--~~~~~~~ta~~--------- 92 (191)
T d1x94a_ 24 DHNIAQIEAAAKLIADSFKQGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPGIA--ISDPSHLSCVS--------- 92 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCEEEECSSSHHHHHHHHHHHHHHHHCTTCSSCSEEE--C-------------------
T ss_pred hhhHHHHHHHHHHHHHHHHcCCEEEEEeCCCCcccHhHHhHhccccccccccccceec--ccchhHHHHhh---------
Confidence 444567999999999999999999999999865433 2223222221111112222 23332211110
Q ss_pred hccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCC----
Q psy13351 113 ITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHS---- 184 (837)
Q Consensus 113 ~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~---- 184 (837)
.+..|+ ..+.+..+.+ .+.-|++|++....+. .|++.|++.|++||+|+..+.+
T Consensus 93 -nd~~~~-----------~~~~~~l~~~------~~~gDvli~iS~SG~s~~ii~a~~~Ak~~g~~~i~it~~~~~~l~~ 154 (191)
T d1x94a_ 93 -NDFGYD-----------YVFSRYVEAV------GAKGDVLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGKDGGKMAG 154 (191)
T ss_dssp ------C-----------CHHHHHHHHH------CCTTCEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTT
T ss_pred -cccchH-----------HHHHHHHHHh------CCCCCEEEEEecCCccccchhhHHHHHhCCCeEEEEecCCCCcccc
Confidence 011111 1111222222 2577999999766553 4567889999999999976532
Q ss_pred CCcceEEccCCCc
Q psy13351 185 PDGINYVIPGNDD 197 (837)
Q Consensus 185 ~~~i~ypIP~N~~ 197 (837)
...+.+.||..+.
T Consensus 155 ~~D~~I~vps~~~ 167 (191)
T d1x94a_ 155 LADVEIRVPHFGY 167 (191)
T ss_dssp TSSEEEEESCCSC
T ss_pred cCCEEEEeCCCCc
Confidence 2224555564443
|
| >d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: UBA/UBX 33.3 kDa protein species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.51 E-value=0.062 Score=41.46 Aligned_cols=30 Identities=20% Similarity=0.048 Sum_probs=27.0
Q ss_pred cCCChHHHHHHHHHhhc-cHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEANG-KLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~-d~~~A~~~Lr~~g 255 (837)
-|.+...|++||..++| |++.|++||-...
T Consensus 19 MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~ 49 (64)
T d1whca_ 19 MGFPRGRAEKALALTGNQGIEAAMDWLMEHE 49 (64)
T ss_dssp TTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHhCCCCHHHHHHHHHHCC
Confidence 58999999999999977 8999999998753
|
| >d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: Suppressor of T-cell receptor signaling 2 (STS-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.05 E-value=0.079 Score=38.85 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=25.8
Q ss_pred cCCChHHHHHHHHHhh-ccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEAN-GKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~-~d~~~A~~~Lr~~ 254 (837)
-|.+...|++||..++ ++++.|.+||-+.
T Consensus 12 MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h 41 (51)
T d2crna1 12 MGFPVHTALKALAATGRKTAEEALAWLHDH 41 (51)
T ss_dssp TSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHCCCCHHHHHHHHHHc
Confidence 5889999999999985 5999999999875
|
| >d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SIS domain superfamily: SIS domain family: mono-SIS domain domain: Phosphoheptose isomerase GmhA1 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.66 E-value=1.7 Score=40.61 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCC-CC-CChHHHHHHHHHHHHHHHHhccCc
Q psy13351 40 YMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGG-LL-TNFKTIKTSIQRLKEMDLFITNGS 117 (837)
Q Consensus 40 ~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G-~L-TN~~~i~~~i~~~~~~~~~~~~~~ 117 (837)
..+.+|+..+.....++|+|+|+|..-.+...-.-.+...+.+.....-+|. .| +|...+.... .+..
T Consensus 26 ~~i~~a~~~i~~~~~~~~kif~~GnGgSas~A~h~a~dl~~~~~~~r~~~~~i~l~~~~s~~ta~~----------Nd~g 95 (194)
T d1x92a_ 26 PYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIA----------NDYS 95 (194)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHH----------HHTC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHhhhhccccccccceeecccchhHHHhhc----------cccC
Confidence 5688999999999999999999999987665533333334332222111221 22 3333221111 1222
Q ss_pred cccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcch----HHHHHhhcCCCEEEEecCCCC-------CC
Q psy13351 118 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKG----AVSEAIKLNIPIIGVVDTNHS-------PD 186 (837)
Q Consensus 118 ~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~----ai~Ea~~l~IP~i~l~Dtn~~-------~~ 186 (837)
|+.. +.|+++ . +.+.-|++|.+...-+.. |++.|+..|+.||+++-.+.+ ..
T Consensus 96 ~~~~-------f~~ql~----~------~~~~gDvli~iS~SG~S~nvi~a~~~Ak~~g~~~i~ltG~~gg~~~~l~~~~ 158 (194)
T d1x92a_ 96 YNEV-------FSKQIR----A------LGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPE 158 (194)
T ss_dssp GGGT-------THHHHH----H------HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTT
T ss_pred HHHH-------HHHHHH----H------hcCCCcEEEEEecCCCcchhHHHHHHHHhcCceEEEEEecCCchHhhhccCC
Confidence 3222 122221 1 236789999998765543 678899999999999866542 23
Q ss_pred cceEEccCCCc
Q psy13351 187 GINYVIPGNDD 197 (837)
Q Consensus 187 ~i~ypIP~N~~ 197 (837)
.+.+.||.++-
T Consensus 159 Di~i~ips~~~ 169 (194)
T d1x92a_ 159 DVEIRVPSKIT 169 (194)
T ss_dssp CEEEECSCSCH
T ss_pred CEEEEeCCCCh
Confidence 46778887753
|
| >d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: Endocytic protein Ede1, YBL047C species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=90.54 E-value=0.11 Score=35.88 Aligned_cols=28 Identities=25% Similarity=0.065 Sum_probs=24.7
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
-|..-.++++||+.+|||++.|..+|-+
T Consensus 14 MGF~e~~A~~AL~k~~wnleaAtN~LLd 41 (43)
T d2g3qa1 14 MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3677889999999999999999999854
|
| >d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: DSK2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.62 E-value=0.13 Score=36.22 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=26.2
Q ss_pred hhhhcccCCChHHHHHHHHHhhccHHHHHHHH
Q psy13351 220 GELRSKTLAPIMECKKALIEANGKLSKAEEIL 251 (837)
Q Consensus 220 ~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~L 251 (837)
.+|+..-=.....|-+||..++||++.|++.|
T Consensus 10 ~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~L 41 (44)
T d2bwba1 10 RQLNDMGFFDFDRNVAALRRSGGSVQGALDSL 41 (44)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 44555444677889999999999999999987
|
| >d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: Ubiquilin-like protein Ubqlnl species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.50 E-value=0.19 Score=36.31 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=28.8
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
..+|+..-=.....|-+||..++||++.|++.|...
T Consensus 12 L~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~ 47 (50)
T d2dnaa1 12 MECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 47 (50)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 344555444677889999999999999999999764
|
| >d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: Ubiquitin-associated protein 2-like Ubap2l species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.42 E-value=0.17 Score=41.00 Aligned_cols=39 Identities=28% Similarity=0.242 Sum_probs=35.9
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhh
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLG 256 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~ 256 (837)
.|++|...|+....+|-=||.++|+|+..|+++|-|-+.
T Consensus 35 kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lLEg~~ 73 (91)
T d1wj7a1 35 KVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP 73 (91)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred HHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHHHHhcCC
Confidence 478899999999999999999999999999999998543
|
| >d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SIS domain superfamily: SIS domain family: mono-SIS domain domain: Phosphoheptose isomerase GmhA1 species: Campylobacter jejuni [TaxId: 197]
Probab=87.38 E-value=3.5 Score=38.10 Aligned_cols=133 Identities=19% Similarity=0.174 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCCC-CCChHHHHHHHHHHHHHHHHhccC
Q psy13351 38 TLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGL-LTNFKTIKTSIQRLKEMDLFITNG 116 (837)
Q Consensus 38 T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~-LTN~~~i~~~i~~~~~~~~~~~~~ 116 (837)
....+.++...+.....++|+|+++|....+.....-.+...+.+-...+-+|.. |+.-..+...+ ..+.
T Consensus 24 ~~~~I~~~~~~i~~~l~~ggkI~~~GnGgSa~~A~h~a~el~~~~~~~r~~l~~i~l~~~~a~~ta~---------~nd~ 94 (188)
T d1tk9a_ 24 LKGQIAKVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAI---------GNDY 94 (188)
T ss_dssp GHHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHH---------HHHT
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEECCCCcchhhhHHHHhhcCCccccccccccccCCCcccccccc---------cccc
Confidence 3577889999999999999999999999988777665566565544443334432 33222111111 1111
Q ss_pred ccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC----Ccc
Q psy13351 117 SIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP----DGI 188 (837)
Q Consensus 117 ~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~----~~i 188 (837)
.|+.. +.|++ +.+ .+.-|++|.+....+. .|++.|++.|++||+++-.+.+. ..+
T Consensus 95 ~~e~~-------f~~ql----~~~------~~~gDili~iS~SG~S~nii~a~~~Ak~~g~~ti~ltg~~~~~l~~~~D~ 157 (188)
T d1tk9a_ 95 GFEFV-------FSRQV----EAL------GNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDH 157 (188)
T ss_dssp CGGGH-------HHHHH----HHH------CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSE
T ss_pred CHHHH-------HHHHH----HHh------cCCCcEEEEecCCCCCchhHHHHHHHHhhcceEEEEeCCCCchhHHhCCE
Confidence 12111 22222 222 2577999999776554 46789999999999998555432 224
Q ss_pred eEEccCCC
Q psy13351 189 NYVIPGND 196 (837)
Q Consensus 189 ~ypIP~N~ 196 (837)
.+.||.++
T Consensus 158 ~i~i~s~~ 165 (188)
T d1tk9a_ 158 NLVVPSDD 165 (188)
T ss_dssp EEEESCSC
T ss_pred EEEECCCC
Confidence 55556553
|
| >d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: 4931431F19Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.73 E-value=0.23 Score=37.45 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=26.8
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
..+|+..-=.....|-+||..+|||++.|+++|-
T Consensus 26 L~qL~eMGF~d~~~Nl~AL~~t~Gdv~~Aie~Ll 59 (61)
T d1veja1 26 LEELKALGFANRDANLQALVATDGDIHAAIEMLL 59 (61)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 4445554445678889999999999999999984
|
| >d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: TAP-C domain-like domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.39 E-value=0.24 Score=35.32 Aligned_cols=39 Identities=18% Similarity=-0.070 Sum_probs=33.5
Q ss_pred cchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 217 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 217 ~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
.+|.+...-||+....++.-|+.+|||++.|+..--+.|
T Consensus 7 ~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~yfe~g 45 (46)
T d1v92a_ 7 DALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHHhcC
Confidence 356777788999999999999999999999998766554
|
| >d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: UBA-like family: UBA domain domain: Ubiquitin isopeptidase T species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.24 E-value=0.39 Score=38.83 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=26.2
Q ss_pred cCCChHHHHHHHHHhh-ccHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEAN-GKLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~-~d~~~A~~~Lr~~g 255 (837)
-|.+...|++||..++ +|++.|++||-+..
T Consensus 39 MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~ 69 (84)
T d1veka_ 39 MGFSQLHCQKAAINTSNAGVEEAMNWLLSHM 69 (84)
T ss_dssp HTCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 4789999999999985 59999999998864
|