Psyllid ID: psy13355

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASSTDLIYH
cEEEEEccHHHHHHHHHHHcccccccccHHHcccEEEEEEccEEEEEEEcccEEEEEEEEcEEccccEEEEEEccHHHHHHHcccccccEEEEEcccEEEEEEccEEEEEccccccccccccccccccEEEEEcHHHHHHHHccEEEEEccccccccEEEEEEEEEccEEEEEEEcccccEEEEEEccccccccccEEEccHHHHHHHHHcccccccEEEEEEccEEEEEEccEEEEEEEcccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEEccccccEEEEEEEcc
cEEEEEEEHHHHHHHHHHHHcccccccccHHHHEEEEEEEccEEEEEEEcccEEEEEEEEcccccEcEEEEEEHHHHHHHHHHcccccEEEEEEEccEEEEEEccEEEEEEcEcHHHcccccccccccEEEEEEHHHHHHHHHccHHHcccccccccccEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHccccccEEEEEEcccEEEEEEccEEEEEEcEccccccHHHHccccccEEEEEEHHHHHHHHHHHHHHccccccEEEEEEEccEEEEEEEcccccEEHEEEEEcc
mqlvvnteknailhPLQMVISIVEKKNILPILSNILVcknsekisflstdTEVQITTYTAVGYGNSSINIIVAARKFIDILRslpetekvTIYIENKHMFiksgkskftlqtldakeypimtlnskydfeFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSfqkkniiavssdghrltYYQVNIdkkfsscsdiiiprkTVFTLQRLLEnkenpvelkisnnQIKIIFSNIEIISKLIdgkfldykYVISNKYEKSFLVNRNKLLRSLQRISIIsndklkgvrlvikpnYLKITvsssnrekasstdliyh
mqlvvnteknailhpLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTavgygnssINIIVAARKFIDILRSLPETEKVTIYIENKhmfiksgkskftlQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKkfsscsdiiiPRKTVFTLQRLLENKenpvelkisnnqiKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRisiisndklkgvrlVIKPNylkitvsssnrekasstdliyh
MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQikiifsnieiiskliDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASSTDLIYH
*****NTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV****************
MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN*****SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT*********SSTDLIYH
MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS***************
MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASSTDLIYH
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MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASSTDLIYH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query314 2.2.26 [Sep-21-2011]
P0A988366 DNA polymerase III subuni N/A N/A 0.945 0.811 0.357 2e-56
P0A989366 DNA polymerase III subuni yes N/A 0.945 0.811 0.357 2e-56
P0A990366 DNA polymerase III subuni N/A N/A 0.945 0.811 0.357 2e-56
P26464366 DNA polymerase III subuni yes N/A 0.945 0.811 0.354 1e-55
Q9I7C4367 DNA polymerase III subuni yes N/A 0.917 0.784 0.335 2e-51
P0A121367 DNA polymerase III subuni yes N/A 0.917 0.784 0.342 3e-51
P0A120367 DNA polymerase III subuni yes N/A 0.917 0.784 0.342 3e-51
Q9KVX5366 DNA polymerase III subuni yes N/A 0.945 0.811 0.327 1e-50
P22838367 DNA polymerase III subuni yes N/A 0.945 0.809 0.34 1e-50
P43744366 DNA polymerase III subuni yes N/A 0.958 0.822 0.351 2e-49
>sp|P0A988|DPO3B_ECOLI DNA polymerase III subunit beta OS=Escherichia coli (strain K12) GN=dnaN PE=1 SV=1 Back     alignment and function desciption
 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)

Query: 8   EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
           E+  +L PLQ V   +  +  LPIL N+L+      +S   TD E+++    A+   +  
Sbjct: 6   EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65

Query: 68  INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
               V ARKF DI R LPE  ++ + +E + M ++SG+S+F+L TL A ++P +  + + 
Sbjct: 66  GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124

Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
           + EFTL Q T+K ++    FS+A QD+RYYLNG+L   + + +  V++DGHRL    + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184

Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
            +   S S +I+PRK V  L R+L+  +NP+ ++I +N I+    +    SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243

Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
           Y+ V+    +K      + L ++  R +I+SN+K +GVRL +  N LKIT ++  +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP-independent) along duplex DNA.
Escherichia coli (strain K12) (taxid: 83333)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7
>sp|P0A989|DPO3B_ECOL6 DNA polymerase III subunit beta OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dnaN PE=3 SV=1 Back     alignment and function description
>sp|P0A990|DPO3B_ECO57 DNA polymerase III subunit beta OS=Escherichia coli O157:H7 GN=dnaN PE=3 SV=1 Back     alignment and function description
>sp|P26464|DPO3B_SALTY DNA polymerase III subunit beta OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dnaN PE=3 SV=3 Back     alignment and function description
>sp|Q9I7C4|DPO3B_PSEAE DNA polymerase III subunit beta OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dnaN PE=3 SV=1 Back     alignment and function description
>sp|P0A121|DPO3B_PSEPU DNA polymerase III subunit beta OS=Pseudomonas putida GN=dnaN PE=3 SV=1 Back     alignment and function description
>sp|P0A120|DPO3B_PSEPK DNA polymerase III subunit beta OS=Pseudomonas putida (strain KT2440) GN=dnaN PE=3 SV=1 Back     alignment and function description
>sp|Q9KVX5|DPO3B_VIBCH DNA polymerase III subunit beta OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=dnaN PE=3 SV=1 Back     alignment and function description
>sp|P22838|DPO3B_PROMI DNA polymerase III subunit beta OS=Proteus mirabilis GN=dnaN PE=3 SV=1 Back     alignment and function description
>sp|P43744|DPO3B_HAEIN DNA polymerase III subunit beta OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaN PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
399020746368 DNA polymerase III, beta subunit [Herbas 0.968 0.826 0.529 2e-93
152980594368 DNA polymerase III subunit beta [Janthin 0.968 0.826 0.526 9e-93
134093296368 DNA polymerase III subunit beta [Hermini 0.968 0.826 0.522 2e-92
398836813368 DNA polymerase III, beta subunit [Herbas 0.968 0.826 0.522 6e-92
340785199368 DNA polymerase III subunit beta [Collimo 0.968 0.826 0.532 9e-92
415952618368 DNA polymerase III, beta subunit [Herbas 0.968 0.826 0.522 1e-91
409408602368 DNA polymerase III subunit beta [Herbasp 0.968 0.826 0.522 1e-91
300309348368 DNA polymerase III subunit beta [Herbasp 0.968 0.826 0.522 2e-91
427400238368 DNA polymerase III, beta subunit [Massil 0.968 0.826 0.516 4e-90
395764323368 DNA polymerase III subunit beta [Janthin 0.968 0.826 0.513 1e-88
>gi|399020746|ref|ZP_10722871.1| DNA polymerase III, beta subunit [Herbaspirillum sp. CF444] gi|398093977|gb|EJL84349.1| DNA polymerase III, beta subunit [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/306 (52%), Positives = 236/306 (77%), Gaps = 2/306 (0%)

Query: 1   MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
           MQLV  T+++ +L PLQ+V  IVE+++ LPIL+NIL+ K+ EK+SFLSTD EVQITT+  
Sbjct: 1   MQLV-KTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAE 59

Query: 61  VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
           VG G+ +    VAARK +DILR+LP++ +VT+ + NK + ++SGKS+F LQTL A+E+P 
Sbjct: 60  VGSGSEATATTVAARKLLDILRALPDSGEVTVTLSNKRLTVQSGKSRFALQTLAAEEFPT 119

Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
           +     Y+ + TL QKTLK + NMV+FS+AQQDIRYYLNGLLL  + KN+IAV++DGHRL
Sbjct: 120 VAQAEHYNAQVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRL 179

Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
            + QV  +++F    ++IIPRKT+  LQRLL+  ++PV+L+I+NNQ+K+ F++IE+ISKL
Sbjct: 180 AFCQVATEQEFPR-QEVIIPRKTIIELQRLLDESDDPVQLEIANNQVKLTFADIELISKL 238

Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
           ++GKF DY  V+   Y+ +F + R +LLRSLQR +I+++DK KGVR VI P  LKI+ ++
Sbjct: 239 VEGKFPDYTRVVPKGYKNNFTIGREQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTN 298

Query: 301 SNREKA 306
           +++E+A
Sbjct: 299 ADQEEA 304

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|152980594|ref|YP_001351692.1| DNA polymerase III subunit beta [Janthinobacterium sp. Marseille] gi|151280671|gb|ABR89081.1| DNA polymerase III beta subunit [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|134093296|ref|YP_001098371.1| DNA polymerase III subunit beta [Herminiimonas arsenicoxydans] gi|133737199|emb|CAL60242.1| DNA polymerase III, beta subunit [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|398836813|ref|ZP_10594141.1| DNA polymerase III, beta subunit [Herbaspirillum sp. YR522] gi|398210879|gb|EJM97513.1| DNA polymerase III, beta subunit [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|340785199|ref|YP_004750664.1| DNA polymerase III subunit beta [Collimonas fungivorans Ter331] gi|340550466|gb|AEK59841.1| DNA polymerase III beta subunit [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
>gi|415952618|ref|ZP_11557186.1| DNA polymerase III, beta subunit [Herbaspirillum frisingense GSF30] gi|407757355|gb|EKF67351.1| DNA polymerase III, beta subunit [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|409408602|ref|ZP_11257037.1| DNA polymerase III subunit beta [Herbaspirillum sp. GW103] gi|386431924|gb|EIJ44752.1| DNA polymerase III subunit beta [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|300309348|ref|YP_003773440.1| DNA polymerase III subunit beta [Herbaspirillum seropedicae SmR1] gi|300072133|gb|ADJ61532.1| DNA polymerase III subunit beta protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|427400238|ref|ZP_18891476.1| DNA polymerase III, beta subunit [Massilia timonae CCUG 45783] gi|425720978|gb|EKU83893.1| DNA polymerase III, beta subunit [Massilia timonae CCUG 45783] Back     alignment and taxonomy information
>gi|395764323|ref|ZP_10444992.1| DNA polymerase III subunit beta [Janthinobacterium lividum PAMC 25724] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
TIGR_CMR|SO_0009366 SO_0009 "DNA polymerase III, b 0.968 0.830 0.346 3.3e-47
TIGR_CMR|CBU_0002369 CBU_0002 "DNA polymerase III, 0.958 0.815 0.336 1.4e-46
UNIPROTKB|P0A988366 dnaN [Escherichia coli K-12 (t 0.968 0.830 0.342 4.8e-46
UNIPROTKB|Q9KVX5366 dnaN "DNA polymerase III subun 0.942 0.808 0.326 9.3e-43
TIGR_CMR|VC_0013366 VC_0013 "DNA polymerase III, b 0.942 0.808 0.326 9.3e-43
TIGR_CMR|SPO_0150372 SPO_0150 "DNA polymerase III, 0.936 0.790 0.254 1.6e-31
TIGR_CMR|ECH_1009369 ECH_1009 "DNA polymerase III, 0.942 0.802 0.255 1.3e-29
TIGR_CMR|GSU_0001372 GSU_0001 "DNA polymerase III, 0.942 0.795 0.278 1.6e-29
TIGR_CMR|APH_1097375 APH_1097 "DNA polymerase III, 0.936 0.784 0.243 7.6e-25
TIGR_CMR|BA_0002379 BA_0002 "DNA polymerase III, b 0.936 0.775 0.234 2.9e-23
TIGR_CMR|SO_0009 SO_0009 "DNA polymerase III, beta subunit" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 107/309 (34%), Positives = 181/309 (58%)

Query:     8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN-S 66
             +++A+L PLQ+V   VE+++ LPIL+N+LV  +   +    TD EV++    AV +G+  
Sbjct:     6 DRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQ-AVIHGDIE 64

Query:    67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
                  V A+K +DI++SLPE  ++ +  ++    ++SG+S+F+L TL A+EYP +    +
Sbjct:    65 EGRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWLLRSGRSRFSLATLPAEEYPNVEA-FQ 123

Query:   127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
              + EFTL Q  LK +++   FS+A QD+RYYLNGLL+  +   + A+++DGHRL      
Sbjct:   124 AEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLIETEGNMLRAIATDGHRLALSHRV 183

Query:   187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFL 246
             I+ +      +I+PRK V  + RLLE  +  + + I +N                DG+F 
Sbjct:   184 IEAQLPE-KQVIVPRKGVMEMARLLETDDLDIAISIGDNAIRATTSTTVFTSKLVDGRFP 242

Query:   247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
             DY+ V+    +K  + +RN   ++L R SI+SN+K +GVR+ ++   LKIT ++  +E+A
Sbjct:   243 DYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITANNPEQEEA 302

Query:   307 SST-DLIYH 314
                 D+ Y+
Sbjct:   303 EEIIDVDYN 311
GO:0006260 "DNA replication" evidence=ISS
GO:0009360 "DNA polymerase III complex" evidence=ISS
TIGR_CMR|CBU_0002 CBU_0002 "DNA polymerase III, beta subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|P0A988 dnaN [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVX5 dnaN "DNA polymerase III subunit beta" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0013 VC_0013 "DNA polymerase III, beta chain" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0150 SPO_0150 "DNA polymerase III, beta subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_1009 ECH_1009 "DNA polymerase III, beta subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0001 GSU_0001 "DNA polymerase III, beta subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|APH_1097 APH_1097 "DNA polymerase III, beta subunit" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0002 BA_0002 "DNA polymerase III, beta subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P29439DPO3B_BUCAP2, ., 7, ., 7, ., 70.33210.89170.7650yesN/A
Q9KVX5DPO3B_VIBCH2, ., 7, ., 7, ., 70.32770.94580.8114yesN/A
P0A121DPO3B_PSEPU2, ., 7, ., 7, ., 70.34250.91710.7847yesN/A
P0A120DPO3B_PSEPK2, ., 7, ., 7, ., 70.34250.91710.7847yesN/A
P22838DPO3B_PROMI2, ., 7, ., 7, ., 70.340.94580.8092yesN/A
Q9Z8K0DPO3B_CHLPN2, ., 7, ., 7, ., 70.24670.93310.8005yesN/A
Q89B36DPO3B_BUCBP2, ., 7, ., 7, ., 70.34420.92990.7870yesN/A
P0A989DPO3B_ECOL62, ., 7, ., 7, ., 70.35780.94580.8114yesN/A
P43744DPO3B_HAEIN2, ., 7, ., 7, ., 70.35170.95850.8224yesN/A
Q9I7C4DPO3B_PSEAE2, ., 7, ., 7, ., 70.33560.91710.7847yesN/A
P57127DPO3B_BUCAI2, ., 7, ., 7, ., 70.30200.91080.7814yesN/A
P26464DPO3B_SALTY2, ., 7, ., 7, ., 70.35450.94580.8114yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.766
4th Layer2.7.7.70.824

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
PRK05643367 PRK05643, PRK05643, DNA polymerase III subunit bet 2e-99
cd00140365 cd00140, beta_clamp, Beta clamp domain 3e-87
smart00480345 smart00480, POL3Bc, DNA polymerase III beta subuni 3e-69
COG0592364 COG0592, DnaN, DNA polymerase sliding clamp subuni 2e-59
TIGR00663367 TIGR00663, dnan, DNA polymerase III, beta subunit 2e-55
PRK14940367 PRK14940, PRK14940, DNA polymerase III subunit bet 9e-38
PRK14943374 PRK14943, PRK14943, DNA polymerase III subunit bet 3e-35
pfam02767116 pfam02767, DNA_pol3_beta_2, DNA polymerase III bet 7e-26
PRK14941374 PRK14941, PRK14941, DNA polymerase III subunit bet 4e-23
pfam00712120 pfam00712, DNA_pol3_beta, DNA polymerase III beta 3e-20
PRK14945362 PRK14945, PRK14945, DNA polymerase III subunit bet 6e-20
PRK06673376 PRK06673, PRK06673, DNA polymerase III subunit bet 4e-18
PRK14942373 PRK14942, PRK14942, DNA polymerase III subunit bet 2e-16
PRK14944375 PRK14944, PRK14944, DNA polymerase III subunit bet 8e-11
PRK07761376 PRK07761, PRK07761, DNA polymerase III subunit bet 2e-08
PRK14947384 PRK14947, PRK14947, DNA polymerase III subunit bet 5e-08
pfam02768121 pfam02768, DNA_pol3_beta_3, DNA polymerase III bet 1e-05
>gnl|CDD|235541 PRK05643, PRK05643, DNA polymerase III subunit beta; Validated Back     alignment and domain information 
 Score =  296 bits (761), Expect = 2e-99
 Identities = 124/307 (40%), Positives = 197/307 (64%), Gaps = 5/307 (1%)

Query: 1   MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
           M+  ++  +NA+L  LQ+V   VE++N +PILSN+L+     K+S  +TD E+ I T   
Sbjct: 1   MKFTIS--RNALLKALQLVQGAVERRNTIPILSNVLIEAEGGKLSLTATDLEISIETTIP 58

Query: 61  VGYGNSSINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYP 119
                   +I V A+K +DI+R LP+  ++T+ + EN  + IKSGKS+F L TL A+++P
Sbjct: 59  AEVEVEEGSITVPAKKLLDIVRKLPDGAEITLELEENNRLTIKSGKSRFNLPTLPAEDFP 118

Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
            +    + +  FTL QKTLK ++    F+++ Q+ RYYLNG+LL  +   + AV++DGHR
Sbjct: 119 NLP-EIEEEVSFTLPQKTLKRLIEKTQFAMSTQETRYYLNGVLLEIEGNELRAVATDGHR 177

Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
           L   ++ +++       +IIPRKT+  LQ+LL++ E PVE+ IS+NQI   F N    SK
Sbjct: 178 LAVRKLELEEGSLGDFSVIIPRKTLLELQKLLDD-EEPVEIFISDNQILFEFGNTIFTSK 236

Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
           LIDGKF DY+ VI  +++K   V+R +LL++L+R SI+SN+K +GV+L +    LKI+ +
Sbjct: 237 LIDGKFPDYRRVIPKEFDKKLTVDRKELLQALERASILSNEKSRGVKLSLSEGQLKISAN 296

Query: 300 SSNREKA 306
           +  + +A
Sbjct: 297 NPEQGEA 303

Length = 367
>gnl|CDD|238082 cd00140, beta_clamp, Beta clamp domain Back     alignment and domain information
>gnl|CDD|214686 smart00480, POL3Bc, DNA polymerase III beta subunit Back     alignment and domain information
>gnl|CDD|223665 COG0592, DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233078 TIGR00663, dnan, DNA polymerase III, beta subunit Back     alignment and domain information
>gnl|CDD|184904 PRK14940, PRK14940, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|184907 PRK14943, PRK14943, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|202381 pfam02767, DNA_pol3_beta_2, DNA polymerase III beta subunit, central domain Back     alignment and domain information
>gnl|CDD|184905 PRK14941, PRK14941, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|216076 pfam00712, DNA_pol3_beta, DNA polymerase III beta subunit, N-terminal domain Back     alignment and domain information
>gnl|CDD|184909 PRK14945, PRK14945, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|135998 PRK06673, PRK06673, DNA polymerase III subunit beta; Validated Back     alignment and domain information
>gnl|CDD|184906 PRK14942, PRK14942, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|184908 PRK14944, PRK14944, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|236089 PRK07761, PRK07761, DNA polymerase III subunit beta; Validated Back     alignment and domain information
>gnl|CDD|237861 PRK14947, PRK14947, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|111641 pfam02768, DNA_pol3_beta_3, DNA polymerase III beta subunit, C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
PRK14944375 DNA polymerase III subunit beta; Provisional 100.0
PRK14942373 DNA polymerase III subunit beta; Provisional 100.0
PRK14947384 DNA polymerase III subunit beta; Provisional 100.0
PRK06673376 DNA polymerase III subunit beta; Validated 100.0
PRK14946366 DNA polymerase III subunit beta; Provisional 100.0
PRK14940367 DNA polymerase III subunit beta; Provisional 100.0
PRK07761376 DNA polymerase III subunit beta; Validated 100.0
PRK14945362 DNA polymerase III subunit beta; Provisional 100.0
PRK14941374 DNA polymerase III subunit beta; Provisional 100.0
PRK05643367 DNA polymerase III subunit beta; Validated 100.0
TIGR00663367 dnan DNA polymerase III, beta subunit. University) 100.0
smart00480345 POL3Bc DNA polymerase III beta subunit. 100.0
PRK14943374 DNA polymerase III subunit beta; Provisional 100.0
cd00140365 beta_clamp Beta clamp domain. The beta subunit (pr 100.0
COG0592364 DnaN DNA polymerase sliding clamp subunit (PCNA ho 100.0
PF00712120 DNA_pol3_beta: DNA polymerase III beta subunit, N- 99.96
PF02767116 DNA_pol3_beta_2: DNA polymerase III beta subunit, 99.96
PRK05643367 DNA polymerase III subunit beta; Validated 99.94
PRK14945362 DNA polymerase III subunit beta; Provisional 99.94
smart00480345 POL3Bc DNA polymerase III beta subunit. 99.93
cd00140365 beta_clamp Beta clamp domain. The beta subunit (pr 99.93
TIGR00663 367 dnan DNA polymerase III, beta subunit. University) 99.91
PRK07761376 DNA polymerase III subunit beta; Validated 99.89
PRK14943 374 DNA polymerase III subunit beta; Provisional 99.88
PRK14941374 DNA polymerase III subunit beta; Provisional 99.88
PRK14940367 DNA polymerase III subunit beta; Provisional 99.87
PRK01115247 DNA polymerase sliding clamp; Validated 99.86
PRK14942373 DNA polymerase III subunit beta; Provisional 99.77
PRK14944375 DNA polymerase III subunit beta; Provisional 99.75
cd00577248 PCNA Proliferating Cell Nuclear Antigen (PCNA) dom 99.74
PRK06673376 DNA polymerase III subunit beta; Validated 99.73
PRK14946366 DNA polymerase III subunit beta; Provisional 99.72
PRK14947384 DNA polymerase III subunit beta; Provisional 99.72
PF00712120 DNA_pol3_beta: DNA polymerase III beta subunit, N- 99.62
PF02767116 DNA_pol3_beta_2: DNA polymerase III beta subunit, 99.52
COG0592 364 DnaN DNA polymerase sliding clamp subunit (PCNA ho 99.45
PRK01115247 DNA polymerase sliding clamp; Validated 99.41
cd00577248 PCNA Proliferating Cell Nuclear Antigen (PCNA) dom 99.22
PF02768121 DNA_pol3_beta_3: DNA polymerase III beta subunit, 99.14
PLN00057263 proliferating cell nuclear antigen; Provisional 98.79
PTZ00113275 proliferating cell nuclear antigen; Provisional 98.79
TIGR00590259 pcna proliferating cell nuclear antigen (pcna). Al 98.75
PHA03383262 PCNA-like protein; Provisional 98.69
PTZ00483264 proliferating cell nuclear antigen; Provisional 98.57
PHA03383262 PCNA-like protein; Provisional 98.33
TIGR00590259 pcna proliferating cell nuclear antigen (pcna). Al 98.31
PF02768121 DNA_pol3_beta_3: DNA polymerase III beta subunit, 98.27
PLN00057263 proliferating cell nuclear antigen; Provisional 98.23
PTZ00113275 proliferating cell nuclear antigen; Provisional 98.21
PTZ00483264 proliferating cell nuclear antigen; Provisional 98.13
PHA02545223 45 sliding clamp; Provisional 98.1
KOG1636|consensus260 96.95
KOG1636|consensus260 96.3
PF00705127 PCNA_N: Proliferating cell nuclear antigen, N-term 95.82
PF04139252 Rad9: Rad9; InterPro: IPR007268 Rad9 is required f 95.24
PF00705127 PCNA_N: Proliferating cell nuclear antigen, N-term 93.15
PF02747128 PCNA_C: Proliferating cell nuclear antigen, C-term 92.44
PF02747128 PCNA_C: Proliferating cell nuclear antigen, C-term 82.27
>PRK14944 DNA polymerase III subunit beta; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.8e-65  Score=477.14  Aligned_cols=306  Identities=19%  Similarity=0.346  Sum_probs=285.6

Q ss_pred             CeEeEEeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEe---eeeccceEEEEechHH
Q psy13355          1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAV---GYGNSSINIIVAARKF   77 (314)
Q Consensus         1 Mk~~~~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~---~~~~~~G~~~v~~k~l   77 (314)
                      |||  +|+|++|.++|+++++++++|++.|+|+||+|++++++|+++|||+++++++++++   ++. ++|+++||||+|
T Consensus         1 Mkf--~i~k~~L~~~l~~v~~~v~~k~~~piL~~ili~a~~~~l~l~atD~ei~i~~~i~~~~~~v~-e~G~v~v~ak~l   77 (375)
T PRK14944          1 MYL--EINKDIFLEQLLKIQKILPQKTFFPIFNALKIQTKKNFLILEANNGNIAIKIEIKDESLKIK-KEGKIACLGRYF   77 (375)
T ss_pred             CEE--EEeHHHHHHHHHHHHhHhcCCCCchhhcCEEEEEECCEEEEEEECccEEEEEEEeCCcceee-cceEEEEehHhH
Confidence            999  99999999999999999999999999999999999999999999999999999997   466 899999999999


Q ss_pred             HHHHhcCCCCCcEEEEEe-CCEEEEEECCeEEEEecCCCCCCCCCcC-CCCCceEEEEeHHHHHHHHhhhcccccccccc
Q psy13355         78 IDILRSLPETEKVTIYIE-NKHMFIKSGKSKFTLQTLDAKEYPIMTL-NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIR  155 (314)
Q Consensus        78 ~~iik~l~~~~~v~l~~~-~~~l~I~~g~~~~~l~~~~~~~fP~~~~-~~~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~  155 (314)
                      .+++|+||++. |+++.+ ++.++|+||+++|+|+++++++||.++. .+. ...+.+++..|++++++|.||+|++++|
T Consensus        78 ~~ivk~Lp~~~-I~~~~~~~~~l~I~s~~s~f~L~~~~~~~fP~~~~~~~~-~~~~~i~~~~l~~~i~~t~fa~s~de~r  155 (375)
T PRK14944         78 IEIIKKINDSL-IKMTVMENNFLVIKTEFCEYKLKLMDLCNFLELDFFFEK-KEFFEIKTHFFKKIIKEINISTSKNEKR  155 (375)
T ss_pred             HHHHHhCCCCc-EEEEEcCCCEEEEEECcEEEEEcCCCHHHCCCCCcccCc-CeEEEECHHHHHHHHhheeEEEccccCc
Confidence            99999999885 999985 6799999999999999999999999997 454 6789999999999999999999999999


Q ss_pred             ceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceEEEehhhHHHHHhhhcC-CCCcEEEEEeCcEEEEEECCE
Q psy13355        156 YYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLEN-KENPVELKISNNQIKIIFSNI  234 (314)
Q Consensus       156 ~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~iip~~~l~~l~k~l~~-~~~~v~i~~~~~~~~~~~~~~  234 (314)
                      |+|+||+|+++++.|+++|||||||++++.+++.... +++++||+|.+.++.|+|++ .++.|+|+++++++.|++++.
T Consensus       156 ~~L~Gv~~~~~~~~l~~vATDghRLa~~~~~~~~~~~-~~~~iIP~k~l~el~kll~~~~~~~v~i~~~~~~i~f~~~~~  234 (375)
T PRK14944        156 PILTGLNLIYQKNLLKALATDSFRMSQKKIKLDFNYH-NFNIVIPNKSLEELSKILEYYQSKNLKIYSDSKKIFLKIDNL  234 (375)
T ss_pred             cceeEEEEEEECCEEEEEEEccceeEEEEeccCCCCC-ceEEEEECchHHHHHHHhccCCCCcEEEEEcCCEEEEEECCE
Confidence            9999999999999999999999999999988864433 67899999999999999974 357899999999999999999


Q ss_pred             EEEEEeccccCCCcccccccCcceEEEEehHHHHHHHhHHhhhhcCC---CCeEEEEEE-CCEEEEEEecCCcceeEEEE
Q psy13355        235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDK---LKGVRLVIK-PNYLKITVSSSNREKASSTD  310 (314)
Q Consensus       235 ~~~~~li~g~yP~~~~v~p~~~~~~~~v~~~~l~~al~rv~~~~~~~---~~~v~l~~~-~~~l~l~~~~~d~G~a~e~~  310 (314)
                      ++++|+++|+||||++++|++++..+.++|.+|++||+|++++++++   ++.|.|.+. ++.|++++.++|.|+|+|++
T Consensus       235 ~~~srLieG~fPdy~~viP~~~~~~~~i~r~~l~~al~Rvslls~~~~~~~~~v~l~~~~~~~l~iss~~~e~G~a~e~i  314 (375)
T PRK14944        235 WFQTSLLEGNYPQIQEIKLTNFPFSIHLNKDDLMKALERVSLLFSKEQNNTNVVKFILTKEKSIEISSSNESLGTALEKI  314 (375)
T ss_pred             EEEEEeecccCCChhhhCCCCCCeEEEEeHHHHHHHHHHHHHHhccccCCCceEEEEEcCCCEEEEEEcCcccCeEEEEE
Confidence            99999999999999999999999999999999999999999999753   377999995 78999999999999999985


Q ss_pred             -ee
Q psy13355        311 -LI  312 (314)
Q Consensus       311 -~~  312 (314)
                       ++
T Consensus       315 ~~~  317 (375)
T PRK14944        315 IPL  317 (375)
T ss_pred             ecc
Confidence             64

>PRK14942 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14947 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK06673 DNA polymerase III subunit beta; Validated Back     alignment and domain information
>PRK14946 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14940 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK07761 DNA polymerase III subunit beta; Validated Back     alignment and domain information
>PRK14945 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14941 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK05643 DNA polymerase III subunit beta; Validated Back     alignment and domain information
>TIGR00663 dnan DNA polymerase III, beta subunit Back     alignment and domain information
>smart00480 POL3Bc DNA polymerase III beta subunit Back     alignment and domain information
>PRK14943 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>cd00140 beta_clamp Beta clamp domain Back     alignment and domain information
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III Back     alignment and domain information
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III Back     alignment and domain information
>PRK05643 DNA polymerase III subunit beta; Validated Back     alignment and domain information
>PRK14945 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>smart00480 POL3Bc DNA polymerase III beta subunit Back     alignment and domain information
>cd00140 beta_clamp Beta clamp domain Back     alignment and domain information
>TIGR00663 dnan DNA polymerase III, beta subunit Back     alignment and domain information
>PRK07761 DNA polymerase III subunit beta; Validated Back     alignment and domain information
>PRK14943 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14941 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14940 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK01115 DNA polymerase sliding clamp; Validated Back     alignment and domain information
>PRK14942 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14944 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea Back     alignment and domain information
>PRK06673 DNA polymerase III subunit beta; Validated Back     alignment and domain information
>PRK14946 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14947 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III Back     alignment and domain information
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III Back     alignment and domain information
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK01115 DNA polymerase sliding clamp; Validated Back     alignment and domain information
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea Back     alignment and domain information
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III Back     alignment and domain information
>PLN00057 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>PTZ00113 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>TIGR00590 pcna proliferating cell nuclear antigen (pcna) Back     alignment and domain information
>PHA03383 PCNA-like protein; Provisional Back     alignment and domain information
>PTZ00483 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>PHA03383 PCNA-like protein; Provisional Back     alignment and domain information
>TIGR00590 pcna proliferating cell nuclear antigen (pcna) Back     alignment and domain information
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III Back     alignment and domain information
>PLN00057 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>PTZ00113 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>PTZ00483 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>PHA02545 45 sliding clamp; Provisional Back     alignment and domain information
>KOG1636|consensus Back     alignment and domain information
>KOG1636|consensus Back     alignment and domain information
>PF00705 PCNA_N: Proliferating cell nuclear antigen, N-terminal domain; InterPro: IPR022648 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication [] Back     alignment and domain information
>PF04139 Rad9: Rad9; InterPro: IPR007268 Rad9 is required for transient cell-cycle arrests and transcriptional induction of DNA repair in response to DNA damage Back     alignment and domain information
>PF00705 PCNA_N: Proliferating cell nuclear antigen, N-terminal domain; InterPro: IPR022648 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication [] Back     alignment and domain information
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication [] Back     alignment and domain information
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
3qsb_B366 Structure Of E. Coli Poliiibeta With (Z)-5-(1-((4'- 9e-54
3q4l_A368 Structure Of A Small Peptide Ligand Bound To E.Coli 2e-53
2pol_A366 Three-Dimensional Structure Of The Beta Subunit Of 2e-53
3pwe_A366 Crystal Structure Of The E. Coli Beta Clamp Mutant 3e-53
2xur_B373 The G157c Mutation In The Escherichia Coli Sliding 3e-52
1jql_A366 Mechanism Of Processivity Clamp Opening By The Delt 7e-51
3f1v_A366 E. Coli Beta Sliding Clamp, 148-153 Ala Mutant Leng 1e-49
2awa_A390 Crystal Structure Of Dna Polymerase Iii, Beta Chain 6e-18
2avt_A378 Crystal Structure Of The Beta Subunit From Dna Poly 2e-16
1vpk_A378 Crystal Structure Of Dna Polymerase Iii, Beta Subun 7e-15
3t0p_A371 Crystal Structure Of A Putative Dna Polymerase Iii 5e-11
3p16_A408 Crystal Structure Of Dna Polymerase Iii Sliding Cla 7e-08
3rb9_A395 Crystal Structure Of The M. Tuberculosis Beta Clamp 7e-08
>pdb|3QSB|B Chain B, Structure Of E. Coli Poliiibeta With (Z)-5-(1-((4'-Fluorobiphenyl-4- Yl)methoxyimino)butyl)-2,2-Dimethyl-4, 6-Dioxocyclohexanecarbonitrile Length = 366 Back     alignment and structure 
Iteration: 1

 Score =  206 bits (525), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 169/299 (56%), Gaps = 2/299 (0%)
Query: 8   EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
           E+  +L PLQ V   +  +  LPIL N+L+      +S   TD E+++    A+   +  
Sbjct: 6   EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68  INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
               V ARKF DI R LPE  ++ + +E + M ++SG+S+F+L TL A ++P +  + + 
Sbjct: 66  GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
           + EFTL Q T+K ++    FS+A QD+RYYLNG+L   + + +  V++DGHRL    + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFLD 247
            +   S S +I+PRK V  L R+L+  +NP+ ++I +N                DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
           Y+ V+    +K      + L ++  R +I+SN+K +GVRL +  N LKIT ++  +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGXDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>pdb|3Q4L|A Chain A, Structure Of A Small Peptide Ligand Bound To E.Coli Dna Sliding Clamp Length = 368 Back     alignment and structure
>pdb|2POL|A Chain A, Three-Dimensional Structure Of The Beta Subunit Of Escherichia Coli Dna Polymerase Iii Holoenzyme: A Sliding Dna Clamp Length = 366 Back     alignment and structure
>pdb|3PWE|A Chain A, Crystal Structure Of The E. Coli Beta Clamp Mutant R103c, I305c, C260s, C333s At 2.2a Resolution Length = 366 Back     alignment and structure
>pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta Subunit Wrench Of The Clamp Loader Complex Of E. Coli Dna Polymerase Iii: Structure Of Beta-Delta (1-140) Length = 366 Back     alignment and structure
>pdb|3F1V|A Chain A, E. Coli Beta Sliding Clamp, 148-153 Ala Mutant Length = 366 Back     alignment and structure
>pdb|2AWA|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec 2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae Tigr4 At 2.50 A Resolution Length = 390 Back     alignment and structure
>pdb|2AVT|A Chain A, Crystal Structure Of The Beta Subunit From Dna Polymerase Of Streptococcus Pyogenes Length = 378 Back     alignment and structure
>pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit (Tm0262) From Thermotoga Maritima At 2.00 A Resolution Length = 378 Back     alignment and structure
>pdb|3T0P|A Chain A, Crystal Structure Of A Putative Dna Polymerase Iii Beta Subunit (Eubrec_0002; Ere_29750) From Eubacterium Rectale Atcc 33656 At 2.26 A Resolution Length = 371 Back     alignment and structure
>pdb|3P16|A Chain A, Crystal Structure Of Dna Polymerase Iii Sliding Clamp Length = 408 Back     alignment and structure
>pdb|3RB9|A Chain A, Crystal Structure Of The M. Tuberculosis Beta Clamp Length = 395 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
3d1g_A366 DNA polymerase III subunit beta; chemical probe, D 1e-107
1vpk_A378 DNA polymerase III, beta subunit; TM0262, structur 2e-99
2avt_A378 DNA polymerase III beta subunit; beta clamp, slidi 5e-96
3t0p_A371 DNA polymerase III, beta subunit; DNA clamp, struc 1e-93
3p16_A408 DNA polymerase III subunit beta; DNA polymerase II 2e-89
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A* Length = 366 Back     alignment and structure
 Score =  315 bits (809), Expect = e-107
 Identities = 108/307 (35%), Positives = 178/307 (57%), Gaps = 4/307 (1%)

Query: 1   MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
           M+  V   +  +L PLQ V   +  +  LPIL N+L+      +S   TD E+++    A
Sbjct: 1   MKFTVE--REHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA 58

Query: 61  VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
           +   +      V ARKF DI R LPE  ++ + +E + M ++SG+S+F+L TL A ++P 
Sbjct: 59  LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118

Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
           +  + + + EFTL Q T+K ++    FS+A QD+RYYLNG+L   + + +  V++DGHRL
Sbjct: 119 LD-DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177

Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
               + I +   S S +I+PRK V  L R+L+  +NP+ ++I +N I+    +    SKL
Sbjct: 178 AVCSMPIGQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKL 236

Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
           +DG+F DY+ V+    +K      + L ++  R +I+SN+K +GVRL +  N LKIT ++
Sbjct: 237 VDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANN 296

Query: 301 SNREKAS 307
             +E+A 
Sbjct: 297 PEQEEAE 303
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 Length = 378 Back     alignment and structure
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A* Length = 378 Back     alignment and structure
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale} Length = 371 Back     alignment and structure
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A* Length = 408 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
3t0p_A371 DNA polymerase III, beta subunit; DNA clamp, struc 100.0
3d1g_A366 DNA polymerase III subunit beta; chemical probe, D 100.0
2avt_A378 DNA polymerase III beta subunit; beta clamp, slidi 100.0
3p16_A408 DNA polymerase III subunit beta; DNA polymerase II 100.0
1vpk_A378 DNA polymerase III, beta subunit; TM0262, structur 100.0
1vpk_A 378 DNA polymerase III, beta subunit; TM0262, structur 99.92
3aiz_C246 DNA polymerase sliding clamp C; protein-protein co 99.92
3k4x_A798 PCNA, proliferating cell nuclear antigen; DNA repl 99.91
1rwz_A245 DNA polymerase sliding clamp; torus, processivity 99.9
1iz5_A249 Proliferating cell nuclear antigen; DNA, replicati 99.9
1ud9_A245 DNA polymerase sliding clamp A; DNA-binding, DNA r 99.89
2ijx_A244 DNA polymerase sliding clamp A; PCNA3 subunit, pro 99.89
3aiz_A248 DNA polymerase sliding clamp B; protein-protein co 99.88
2zvv_A276 PCNA 1, proliferating cellular nuclear antigen 1; 99.85
3t0p_A371 DNA polymerase III, beta subunit; DNA clamp, struc 99.84
3d1g_A366 DNA polymerase III subunit beta; chemical probe, D 99.82
1plq_A258 Proliferating cell nuclear antigen (PCNA); DNA-bin 99.82
1u7b_A261 PCNA, cyclin, proliferating cell nuclear antigen; 99.81
3fds_D245 DNA polymerase sliding clamp C; protein-protein co 99.81
3ifv_A247 PCNA; processivity factor, sliding clamp, halophil 99.8
2avt_A378 DNA polymerase III beta subunit; beta clamp, slidi 99.79
3p16_A408 DNA polymerase III subunit beta; DNA polymerase II 99.77
3k4x_A 798 PCNA, proliferating cell nuclear antigen; DNA repl 99.75
3lx2_A259 DNA polymerase sliding clamp 2; PCNA, DNA processi 99.73
3p91_A265 Proliferating cell nuclear antigen; DNA binding pr 99.71
3aiz_C246 DNA polymerase sliding clamp C; protein-protein co 99.51
1iz5_A249 Proliferating cell nuclear antigen; DNA, replicati 99.48
1rwz_A245 DNA polymerase sliding clamp; torus, processivity 99.39
2ijx_A244 DNA polymerase sliding clamp A; PCNA3 subunit, pro 99.39
3aiz_A248 DNA polymerase sliding clamp B; protein-protein co 99.38
2zvv_A276 PCNA 1, proliferating cellular nuclear antigen 1; 99.38
3fds_D245 DNA polymerase sliding clamp C; protein-protein co 99.36
1ud9_A245 DNA polymerase sliding clamp A; DNA-binding, DNA r 99.31
1plq_A258 Proliferating cell nuclear antigen (PCNA); DNA-bin 99.29
3lx2_A259 DNA polymerase sliding clamp 2; PCNA, DNA processi 99.29
1u7b_A261 PCNA, cyclin, proliferating cell nuclear antigen; 99.28
3ifv_A247 PCNA; processivity factor, sliding clamp, halophil 99.13
3p91_A265 Proliferating cell nuclear antigen; DNA binding pr 99.13
3fds_C249 DNA polymerase sliding clamp B; protein-protein co 98.87
3fds_C249 DNA polymerase sliding clamp B; protein-protein co 98.64
3a1j_A266 Cell cycle checkpoint control protein RAD9A; DNA d 98.41
3a1j_C263 Cell cycle checkpoint protein RAD1; DNA damage, DN 98.39
1b77_A228 GP45, protein (sliding clamp); replisome; 2.10A {E 97.87
3g65_A296 Cell cycle checkpoint control protein RAD9A; PCNA, 97.66
3a1j_C263 Cell cycle checkpoint protein RAD1; DNA damage, DN 97.58
3a1j_A266 Cell cycle checkpoint control protein RAD9A; DNA d 96.87
3a1j_B281 HHUS1, checkpoint protein HUS1; DNA damage, DNA re 96.6
3g65_A296 Cell cycle checkpoint control protein RAD9A; PCNA, 94.25
3a1j_B281 HHUS1, checkpoint protein HUS1; DNA damage, DNA re 92.39
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale} Back     alignment and structure
Probab=100.00  E-value=4.4e-68  Score=493.35  Aligned_cols=306  Identities=24%  Similarity=0.421  Sum_probs=289.8

Q ss_pred             CeEeEEeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEeeeeccceEEEEechHHHHH
Q psy13355          1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDI   80 (314)
Q Consensus         1 Mk~~~~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~~~~~G~~~v~~k~l~~i   80 (314)
                      |||  +|+|+.|.++|+++++++++|++.|+|+||+|++++++|+++|||+++++++++++++. ++|+++||||+|.+|
T Consensus         2 Mkf--~i~r~~L~~~l~~v~~~v~~r~t~pIL~~ili~a~~~~L~ltatD~ei~i~~~i~a~v~-~~G~~~v~ak~l~di   78 (371)
T 3t0p_A            2 MKL--ICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGTIE-ERGIIALDAKIFSEI   78 (371)
T ss_dssp             CEE--EEEHHHHHHHHHHHGGGSCSSCSSGGGGEEEEEESSSSEEEEEECSSEEEEEEECCEEE-ECEEEEEEHHHHHHH
T ss_pred             eEE--EEEHHHHHHHHHHHHhhcCCCCChHHhCCEEEEEECCEEEEEEeCcEEEEEEEEEEEEc-cCeEEEEEHHHHHHH
Confidence            999  99999999999999999999999999999999999999999999999999999999987 899999999999999


Q ss_pred             HhcCCCCCcEEEEEeCC-EEEEEECCeEEEEecCCCCCCCCCcCCCCCceEEEEeHHHHHHHHhhhccccccccccceee
Q psy13355         81 LRSLPETEKVTIYIENK-HMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLN  159 (314)
Q Consensus        81 ik~l~~~~~v~l~~~~~-~l~I~~g~~~~~l~~~~~~~fP~~~~~~~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~~~l~  159 (314)
                      +|+||+++ |+|+.+++ ++.|+||+++|+|+++++++||.+|..+. ...+.+++..|+++|+++.||+|++++||+|+
T Consensus        79 vr~Lp~~~-i~l~~~~~~~l~I~~g~s~f~l~~~~~~dfP~lp~~~~-~~~~~i~~~~L~~~I~~t~fA~s~de~r~~L~  156 (371)
T 3t0p_A           79 VRKLPDND-VTIETDASFKTVISCEKAKFNIIGKSGDDFSYIPYVER-NESIVLSQFTLKEVIRQTIFSIADNDNNKLMT  156 (371)
T ss_dssp             HHHSCSSE-EEEEECTTCEEEEEETTEEEEEECBCGGGSCCCCCCCC-CSEEEEEHHHHHHHHHTTGGGSCSSSSSTGGG
T ss_pred             HHhCCCCc-EEEEECCCCeEEEEECCEEEEEccCCHHHCCCCCCCCC-CeEEEECHHHHHHHHhheeEEeeCCCCchhce
Confidence            99999996 99999765 99999999999999999999999999886 67999999999999999999999999999999


Q ss_pred             eEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceEEEehhhHHHHHhhhc-CCCCcEEEEEeCcEEEEEECCEEEEE
Q psy13355        160 GLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLE-NKENPVELKISNNQIKIIFSNIEIIS  238 (314)
Q Consensus       160 gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~iip~~~l~~l~k~l~-~~~~~v~i~~~~~~~~~~~~~~~~~~  238 (314)
                      ||+|+++++.|+++|||||||++++.+++...+ +.+++||+|.+.++.|+|+ +.+++|+|+++++++.|++++.++++
T Consensus       157 Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~-~~~~iIP~k~l~el~kll~~~~~~~V~i~~~~~~i~f~~~~~~~~s  235 (371)
T 3t0p_A          157 GELFEIEENKLRVVSLDGHRISIRYIEMKNHYD-SKKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVVS  235 (371)
T ss_dssp             EEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEE-EEEEEEEHHHHHHHHHHCCCCTTSEEEEEEETTEEEEEETTEEEEE
T ss_pred             EEEEEEECCEEEEEEecceEEEEEEeccCCCCC-ceEEEEEHHHHHHHHHhcCcCCCceEEEEEcCCEEEEEECCEEEEE
Confidence            999999999999999999999999998874323 5789999999999999997 34689999999999999999999999


Q ss_pred             EeccccCCCcccccccCcceEEEEehHHHHHHHhHHhhhhcCC-CCeEEEEEECCEEEEEEecCCcceeEEEEeec
Q psy13355        239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDK-LKGVRLVIKPNYLKITVSSSNREKASSTDLIY  313 (314)
Q Consensus       239 ~li~g~yP~~~~v~p~~~~~~~~v~~~~l~~al~rv~~~~~~~-~~~v~l~~~~~~l~l~~~~~d~G~a~e~~~~~  313 (314)
                      |+++|+||||++++|++++..+.++|.+|++||+|++++++++ ++.|+|++++++|++++.+ |.|+++|++++.
T Consensus       236 rLidG~fPdy~~viP~~~~~~~~v~r~~l~~al~Rvs~ls~e~~~~~V~l~~~~~~l~i~~~~-~~g~a~E~i~~~  310 (371)
T 3t0p_A          236 RLIEGEYFKIDQMLSSDYDTKVRINKRELLDCIDRATLLVKEGDKKPIIMNITDGNMELRINS-FIGSMNEDIDID  310 (371)
T ss_dssp             ECCCSCCCCCGGGCCCCCSEEEEEEHHHHHHHHHHHHTTCCC-CCCCEEEEEETTEEEEEEEC-SSEEEEEEEECE
T ss_pred             EEecccCCChhhhccccCCEEEEEEHHHHHHHHHHHHHhhccCCCceEEEEEeCCEEEEEEeC-CCCcEEEEEEEE
Confidence            9999999999999999999999999999999999999999765 5789999999999999986 899999999863
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A* Back     alignment and structure
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A* Back     alignment and structure
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A* Back     alignment and structure
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 Back     alignment and structure
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 Back     alignment and structure
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A* Back     alignment and structure
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A* Back     alignment and structure
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A* Back     alignment and structure
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2 Back     alignment and structure
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C* Back     alignment and structure
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B* Back     alignment and structure
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A Back     alignment and structure
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale} Back     alignment and structure
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A* Back     alignment and structure
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B Back     alignment and structure
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A* Back     alignment and structure
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B* Back     alignment and structure
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A Back     alignment and structure
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A* Back     alignment and structure
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A* Back     alignment and structure
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis} Back     alignment and structure
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica} Back     alignment and structure
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A* Back     alignment and structure
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A* Back     alignment and structure
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A* Back     alignment and structure
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C* Back     alignment and structure
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B* Back     alignment and structure
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A Back     alignment and structure
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B* Back     alignment and structure
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2 Back     alignment and structure
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B Back     alignment and structure
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis} Back     alignment and structure
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A* Back     alignment and structure
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A Back     alignment and structure
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica} Back     alignment and structure
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C* Back     alignment and structure
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C* Back     alignment and structure
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A Back     alignment and structure
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C Back     alignment and structure
>1b77_A GP45, protein (sliding clamp); replisome; 2.10A {Enterobacteria phage RB69} SCOP: d.131.1.2 d.131.1.2 PDB: 1b8h_A* 1czd_A* 3u5z_G* 3u60_G* 3u61_G* Back     alignment and structure
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens} Back     alignment and structure
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C Back     alignment and structure
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A Back     alignment and structure
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B Back     alignment and structure
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens} Back     alignment and structure
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 314
d1ok7a1122 d.131.1.1 (A:1-122) DNA polymerase III, beta subun 2e-23
d1ok7a2122 d.131.1.1 (A:123-244) DNA polymerase III, beta sub 7e-22
d1vpka2123 d.131.1.1 (A:121-243) DNA polymerase III, beta sub 3e-21
d1vpka1120 d.131.1.1 (A:1-120) DNA polymerase III, beta subun 5e-20
d1ok7a3122 d.131.1.1 (A:245-366) DNA polymerase III, beta sub 2e-04
d1vpka3123 d.131.1.1 (A:244-366) DNA polymerase III, beta sub 4e-04
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Length = 123 Back     information, alignment and structure
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Length = 120 Back     information, alignment and structure
>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Length = 123 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
d1vpka2123 DNA polymerase III, beta subunit {Thermotoga marit 99.96
d1ok7a2122 DNA polymerase III, beta subunit {Escherichia coli 99.96
d1ok7a1122 DNA polymerase III, beta subunit {Escherichia coli 99.96
d1vpka1120 DNA polymerase III, beta subunit {Thermotoga marit 99.95
d1vpka1120 DNA polymerase III, beta subunit {Thermotoga marit 99.72
d1ok7a1122 DNA polymerase III, beta subunit {Escherichia coli 99.72
d1vpka2123 DNA polymerase III, beta subunit {Thermotoga marit 99.62
d1ok7a2122 DNA polymerase III, beta subunit {Escherichia coli 99.59
d1vpka3123 DNA polymerase III, beta subunit {Thermotoga marit 99.18
d1ok7a3122 DNA polymerase III, beta subunit {Escherichia coli 99.15
d1vpka3123 DNA polymerase III, beta subunit {Thermotoga marit 98.2
d1ok7a3122 DNA polymerase III, beta subunit {Escherichia coli 98.13
d1rwza1122 Proliferating cell nuclear antigen (PCNA) {Archaeo 98.13
d1rwza1122 Proliferating cell nuclear antigen (PCNA) {Archaeo 97.39
d1iz5a1119 Proliferating cell nuclear antigen (PCNA) {Archaeo 97.32
d1ud9a1119 Proliferating cell nuclear antigen (PCNA) {Archaeo 97.0
d1plqa1126 Proliferating cell nuclear antigen (PCNA) {Baker's 96.78
d1u7ba1126 Proliferating cell nuclear antigen (PCNA) {Human ( 96.74
d1ud9a1119 Proliferating cell nuclear antigen (PCNA) {Archaeo 95.46
d1iz5a1119 Proliferating cell nuclear antigen (PCNA) {Archaeo 94.61
d1u7ba1126 Proliferating cell nuclear antigen (PCNA) {Human ( 94.59
d1plqa1126 Proliferating cell nuclear antigen (PCNA) {Baker's 93.95
d1iz5a2121 Proliferating cell nuclear antigen (PCNA) {Archaeo 93.77
d1plqa2132 Proliferating cell nuclear antigen (PCNA) {Baker's 93.29
d1u7ba2129 Proliferating cell nuclear antigen (PCNA) {Human ( 93.0
d1rwza2122 Proliferating cell nuclear antigen (PCNA) {Archaeo 92.06
d1iz5a2121 Proliferating cell nuclear antigen (PCNA) {Archaeo 90.98
d1rwza2122 Proliferating cell nuclear antigen (PCNA) {Archaeo 90.4
d1plqa2132 Proliferating cell nuclear antigen (PCNA) {Baker's 89.78
d1u7ba2129 Proliferating cell nuclear antigen (PCNA) {Human ( 88.43
d1ud9a2119 Proliferating cell nuclear antigen (PCNA) {Archaeo 87.32
d1ud9a2119 Proliferating cell nuclear antigen (PCNA) {Archaeo 86.68
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=2e-29  Score=195.86  Aligned_cols=119  Identities=22%  Similarity=0.460  Sum_probs=112.3

Q ss_pred             ceEEEEeHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceEEEehhhHHHH
Q psy13355        128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTL  207 (314)
Q Consensus       128 ~~~~~v~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~iip~~~l~~l  207 (314)
                      +..|.|+++.|.++|++|.||+|++++||+|+||+|++++|.++++|||||||+..+.+++.. + +.+++||+|.+.++
T Consensus         4 ~~~f~i~~~~L~~~I~~v~fA~s~d~~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~-~-~~~~iiP~k~l~el   81 (123)
T d1vpka2           4 GITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVASDGFRLALAEEQIENE-E-EASFLLSLKSMKEV   81 (123)
T ss_dssp             SEEEEEEHHHHHHHHHHHGGGSCCCTTCTTTSEEEEEEETTEEEEEEECSSEEEEEEEECCCC-S-CEEEEEEHHHHHHH
T ss_pred             ceEEEECHHHHHHHHhheeEEeccCCccceEEeEEEEEecCceEEEEEeeeeeeeeehhcccC-C-cccEEEeechhhHH
Confidence            678999999999999999999999999999999999999999999999999999999998764 2 68999999999999


Q ss_pred             HhhhcCC-CCcEEEEEeCcEEEEEECCEEEEEEeccccCCCc
Q psy13355        208 QRLLENK-ENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY  248 (314)
Q Consensus       208 ~k~l~~~-~~~v~i~~~~~~~~~~~~~~~~~~~li~g~yP~~  248 (314)
                      .|++++. +++|+|+++++++.|++++.++.+|+++|+||||
T Consensus        82 ~k~l~~~~~~~v~i~~~~~~i~~~~~~~~~~srlieG~fPdY  123 (123)
T d1vpka2          82 QNVLDNTTEPTITVRYDGRRVSLSTNDVETVMRVVDAEFPDY  123 (123)
T ss_dssp             HHHHHTCCCSEEEEEECSSEEEEECSSEEEEEECCSSCCCCG
T ss_pred             HhhhcccccceEEEEECCCEEEEEECCEEEEEEeeCccCCCC
Confidence            9999863 4689999999999999999999999999999998
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure