Psyllid ID: psy13362

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFHHFNKPSQIERLNFDDGSISTSGLKANSNKDLEDFLMLEREKAKMTAQTGSTCFISPRVITLGLRFGFGYKILRIHAFARISTSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGLD
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcHHccccHHHHcEcccccccEccccccccccccHHHHHHHHHHHHHHHcccccccEccHHHHHHHHHHHHHHHHHHcccHcHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MLEREKAKMTAQMFEFNdicwdkcmtdkpgqrldsktetcivncvdsfpvfhhfnkpsqierlnfddgsistsglkansnkdLEDFLMLEREKAKMtaqtgstcfisprvitlglrfgfgYKILRIHAFARIStsglkansnkdLEDFLMLEREKAKMTAQMFEFNdicwdkcmtdkpgqrldsktetciVNCVDRFIDISMFIANRLtqrtngld
Flexible Loop (DISEMBL)
MLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFHHFNKPSQIERLNFDDGSistsglkansnkdLEDFLMLEREKAKmtaqtgstcfispRVITLGLRFGFGYKILRIHAFARistsglkansnkDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDkpgqrldsktetCIVNCVDRFIDISMFIanrltqrtngld
Low Complexity Region (SEG)
MLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFHHFNKPSQIERLNFDDGSISTSGLKANSNKDLEDFLMLEREKAKMTAQTGSTCFISPRVITLGLRFGFGYKILRIHAFARISTSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGLD
Disordered region (IsUnstruct)
***********QMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFHHFNKPSQIERL**********************************AQTGSTCFISPRVITLGLRFGFGYKILRIHAFARISTSGLKAN**KDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRL********
Disordered Region (DISOPRED)
**********AQMFEFNDICWDKCM*************TCIVNCVDSFPVFHHFN******************************FLM**R*************FISPRVITLGLRFGFGYKIL**************************************FEFNDICWDKCM*************TCIVNCVDRFIDISMFIAN**********
Disordered Region (DISEMBL)
*********TAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFHHFNKPSQIERLNFDDGSISTSGLKANSNKDLEDFLMLEREKAKMTAQTGSTCFISPRVITLGLRFGFGYKILRIHAFARISTSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGLD
Disordered Region (DISPRO)
MLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFHHFNKPSQIERLNFDDGSISTSGLKANSNKDLEDFLMLEREKAKMTAQTGSTCFISPRVITLGLRFGFGYKILRIHAFARISTSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRT****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFHHFNKPSQIERLNFDDGSISTSGLKANSNKDLEDFLMLEREKAKMTAQTGSTCFISPRVITLGLRFGFGYKILRIHAFARISTSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q9Y1A3	88	Mitochondrial import inne	yes	N/A	0.328	0.806	0.513	4e-17
Q66L32	94	Mitochondrial import inne	N/A	N/A	0.361	0.829	0.468	8e-17
Q90YI5	90	Mitochondrial import inne	N/A	N/A	0.365	0.877	0.475	9e-16
Q6DEM5	90	Mitochondrial import inne	no	N/A	0.337	0.811	0.486	5e-15
P62078	83	Mitochondrial import inne	yes	N/A	0.305	0.795	0.492	4e-14
P62077	83	Mitochondrial import inne	yes	N/A	0.305	0.795	0.492	4e-14
Q9Y5J9	83	Mitochondrial import inne	no	N/A	0.305	0.795	0.492	4e-14
Q3SZ93	83	Mitochondrial import inne	yes	N/A	0.305	0.795	0.492	4e-14
O60220	97	Mitochondrial import inne	no	N/A	0.347	0.773	0.467	9e-14
Q4FZG7	97	Putative mitochondrial im	no	N/A	0.328	0.731	0.472	1e-13

>sp|Q9Y1A3|TIM8_DROME Mitochondrial import inner membrane translocase subunit Tim8 OS=Drosophila melanogaster GN=Tim8 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 56/72 (77%), Gaps = 1/72 (1%)

Query: 139 ANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFI 198
           + ++K+L++FL++E++KA++ AQ+ EFN+ICW+KC+  KP  +LD  TETC+ NCVDRFI
Sbjct: 8   SGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCI-GKPSTKLDHATETCLSNCVDRFI 66

Query: 199 DISMFIANRLTQ 210
           D S+ I  R  Q
Sbjct: 67  DTSLLITQRFAQ 78

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The Tim8-Tim13 complex mediates the import of some proteins while the predominant Tim9-Tim10 70 kDa complex mediates the import of much more proteins.
Drosophila melanogaster (taxid: 7227)

>sp|Q66L32|TIM8A_XENLA Mitochondrial import inner membrane translocase subunit Tim8 A OS=Xenopus laevis GN=timm8a PE=3 SV=1

 Score = 87.0 bits (214), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 57/79 (72%), Gaps = 1/79 (1%)

Query: 132 ISTSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIV 191
           ++ +G       +L+  L +E++KA+ TAQ+  F D+CWDKC+ D+PG +LDS+TE+C+V
Sbjct: 10  LAGTGASPAEAAELQRMLAVEQQKAQFTAQVHNFMDVCWDKCI-DRPGNKLDSRTESCLV 68

Query: 192 NCVDRFIDISMFIANRLTQ 210
           +CVDRFID ++ I NR  Q
Sbjct: 69  SCVDRFIDTTLSITNRFAQ 87

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of some proteins while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Xenopus laevis (taxid: 8355)

>sp|Q90YI5|TIM8A_TAKRU Mitochondrial import inner membrane translocase subunit Tim8 A OS=Takifugu rubripes GN=timm8a PE=3 SV=1

 Score = 83.6 bits (205), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 3/82 (3%)

Query: 135 SGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCV 194
           +G  A+++  L+ F+ +E +K +    +    ++CWDKCM DKPG +LDS+ E C VNCV
Sbjct: 2   NGQGASADPQLQQFIEIESQKQRFQQLVHHMTEVCWDKCM-DKPGPKLDSRAEMCFVNCV 60

Query: 195 DRFIDISMFIANRL--TQRTNG 214
           +RFID S FI NRL  TQR+ G
Sbjct: 61  ERFIDTSQFILNRLEQTQRSKG 82

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of some proteins while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Takifugu rubripes (taxid: 31033)

>sp|Q6DEM5|TIM8A_DANRE Mitochondrial import inner membrane translocase subunit Tim8 A OS=Danio rerio GN=timm8a PE=3 SV=1

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 3/76 (3%)

Query: 141 SNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDI 200
           ++  L+ F+ +E +K +    + +  ++CW+KCM DKPG +LDS+TE C VNCV+RFID 
Sbjct: 8   TDPQLQQFIEIESQKQRFQQLVHQMTEVCWEKCM-DKPGPKLDSRTEVCFVNCVERFIDT 66

Query: 201 SMFIANRL--TQRTNG 214
           S FI NRL  TQR+ G
Sbjct: 67  SQFILNRLEQTQRSRG 82

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of some proteins while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Danio rerio (taxid: 7955)

>sp|P62078|TIM8B_RAT Mitochondrial import inner membrane translocase subunit Tim8 B OS=Rattus norvegicus GN=Timm8b PE=3 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 49/67 (73%), Gaps = 1/67 (1%)

Query: 144 DLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMF 203
           +L+  +  E++KA+ TAQ+  F ++CWDKC+ +KPG RLDS+TE C+ +CVDRFID ++ 
Sbjct: 11  ELQRLVAAEQQKAQFTAQVHHFMELCWDKCV-EKPGSRLDSRTENCLSSCVDRFIDTTLA 69

Query: 204 IANRLTQ 210
           I  R  Q
Sbjct: 70  ITGRFAQ 76

Probable mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Rattus norvegicus (taxid: 10116)

>sp|P62077|TIM8B_MOUSE Mitochondrial import inner membrane translocase subunit Tim8 B OS=Mus musculus GN=Timm8b PE=3 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 49/67 (73%), Gaps = 1/67 (1%)

Query: 144 DLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMF 203
           +L+  +  E++KA+ TAQ+  F ++CWDKC+ +KPG RLDS+TE C+ +CVDRFID ++ 
Sbjct: 11  ELQRLVAAEQQKAQFTAQVHHFMELCWDKCV-EKPGSRLDSRTENCLSSCVDRFIDTTLA 69

Query: 204 IANRLTQ 210
           I  R  Q
Sbjct: 70  ITGRFAQ 76

Probable mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Mus musculus (taxid: 10090)

>sp|Q9Y5J9|TIM8B_HUMAN Mitochondrial import inner membrane translocase subunit Tim8 B OS=Homo sapiens GN=TIMM8B PE=1 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 50/67 (74%), Gaps = 1/67 (1%)

Query: 144 DLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMF 203
           +L+  +  E++KA+ TAQ+  F ++CWDKC+ +KPG RLDS+TE C+ +CVDRFID ++ 
Sbjct: 11  ELQRLVAAEQQKAQFTAQVHHFMELCWDKCV-EKPGNRLDSRTENCLSSCVDRFIDTTLA 69

Query: 204 IANRLTQ 210
           I +R  Q
Sbjct: 70  ITSRFAQ 76

Probable mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Homo sapiens (taxid: 9606)

>sp|Q3SZ93|TIM8B_BOVIN Mitochondrial import inner membrane translocase subunit Tim8 B OS=Bos taurus GN=TIMM8B PE=3 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 50/67 (74%), Gaps = 1/67 (1%)

Query: 144 DLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMF 203
           +L+  +  E++KA+ TAQ+  F ++CWDKC+ +KPG RLDS+TE C+ +CVDRFID ++ 
Sbjct: 11  ELQRLVAAEQQKAQFTAQVHHFMELCWDKCV-EKPGNRLDSRTENCLSSCVDRFIDTTLA 69

Query: 204 IANRLTQ 210
           I +R  Q
Sbjct: 70  ITSRFAQ 76

Probable mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Bos taurus (taxid: 9913)

>sp|O60220|TIM8A_HUMAN Mitochondrial import inner membrane translocase subunit Tim8 A OS=Homo sapiens GN=TIMM8A PE=1 SV=1

 Score = 77.0 bits (188), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 2/77 (2%)

Query: 134 TSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNC 193
            +GL A  +  L+ F+ +E +K +    + +  ++CW+KCM DKPG +LDS+ E C VNC
Sbjct: 9   AAGLGA-VDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCM-DKPGPKLDSRAEACFVNC 66

Query: 194 VDRFIDISMFIANRLTQ 210
           V+RFID S FI NRL Q
Sbjct: 67  VERFIDTSQFILNRLEQ 83

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of proteins such as TIMM23, SLC25A12/ARALAR1 and SLC25A13/ARALAR2, while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins. Probably necessary for normal neurologic development.

Homo sapiens (taxid: 9606)

>sp|Q4FZG7|TI8AB_MOUSE Putative mitochondrial import inner membrane translocase subunit Tim8 A-B OS=Mus musculus GN=Timm8a2 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 139 ANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFI 198
            +S+  L+ F+  E +K ++   +    ++CW+KCM DKPG RLD + E C+VNCV+RFI
Sbjct: 13  GSSDPQLQRFMEAEVQKQRVQLLIHHMTELCWEKCM-DKPGPRLDGRAELCLVNCVERFI 71

Query: 199 DISMFIANRLTQ 210
           D S FI NRL Q
Sbjct: 72  DTSQFILNRLEQ 83

Putative mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
242009508	105	mitochondrial import inner membrane tran	0.347	0.714	0.564	5e-20
157112310	89	mitochondrial inner membrane protein tra	0.333	0.808	0.616	1e-19
332374588	93	unknown [Dendroctonus ponderosae]	0.398	0.924	0.511	3e-19
91080627	92	PREDICTED: similar to translocase of inn	0.375	0.880	0.548	4e-19
170066886	89	mitochondrial import inner membrane tran	0.324	0.786	0.619	6e-19
312372807	199	hypothetical protein AND_19675 [Anophele	0.356	0.386	0.538	1e-18
118785374	90	AGAP010606-PA [Anopheles gambiae str. PE	0.333	0.8	0.575	1e-18
170066884	89	mitochondrial inner membrane protein tra	0.324	0.786	0.605	2e-18
357605529	82	translocase of inner mitochondrial membr	0.324	0.853	0.591	4e-18
340714941	90	PREDICTED: mitochondrial import inner me	0.319	0.766	0.585	5e-18

>gi|242009508|ref|XP_002425526.1| mitochondrial import inner membrane translocase subunit Tim8, putative [Pediculus humanus corporis] gi|212509395|gb|EEB12788.1| mitochondrial import inner membrane translocase subunit Tim8, putative [Pediculus humanus corporis]

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 62/78 (79%), Gaps = 3/78 (3%)

Query: 135 SGLKANSN---KDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIV 191
           S + +N+N   ++L+DFLM+E++KA+  AQ+ EFND CW+KC++DKP  +LD KTETC+ 
Sbjct: 19  SAVSSNNNNIDQELQDFLMIEKQKAQFNAQIHEFNDFCWEKCISDKPKSKLDGKTETCLN 78

Query: 192 NCVDRFIDISMFIANRLT 209
           NCVDRFID+S+FI NR  
Sbjct: 79  NCVDRFIDVSLFITNRYA 96

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112310|ref|XP_001657489.1| mitochondrial inner membrane protein translocase, 8kD-subunit, putative [Aedes aegypti] gi|94468592|gb|ABF18145.1| mitochondrial import inner membrane translocase subunit TIM8 [Aedes aegypti] gi|108883762|gb|EAT47987.1| AAEL000941-PA [Aedes aegypti]

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 60/73 (82%), Gaps = 1/73 (1%)

Query: 138 KANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRF 197
           K + + +L+DFLM E++KA+++AQ+ EFNDICWDKCM DKPG +LDS+TETC+ NCV+RF
Sbjct: 9   KGSVDPELQDFLMAEKQKAQLSAQIHEFNDICWDKCM-DKPGSKLDSRTETCLNNCVNRF 67

Query: 198 IDISMFIANRLTQ 210
           ID S+FI  R  Q
Sbjct: 68  IDTSLFITTRFAQ 80

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374588|gb|AEE62435.1| unknown [Dendroctonus ponderosae]

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 66/90 (73%), Gaps = 4/90 (4%)

Query: 129 FARISTSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTET 188
           F   S+       +K+L++FLM+E++KA+  AQ+ EFND CWDKC+ +KPG +LDS+TET
Sbjct: 5   FGDFSSELSSKGDDKELQEFLMVEKQKAQFNAQIHEFNDFCWDKCV-EKPGNKLDSRTET 63

Query: 189 CIVNCVDRFIDISMFIANR---LTQRTNGL 215
           C+ NCVDRFID+S+ I NR   L Q++ G+
Sbjct: 64  CLTNCVDRFIDVSLLITNRFAQLLQKSGGM 93

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080627|ref|XP_974324.1| PREDICTED: similar to translocase of inner mitochondrial membrane 8 homolog b [Tribolium castaneum] gi|270005506|gb|EFA01954.1| hypothetical protein TcasGA2_TC007570 [Tribolium castaneum]

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 61/82 (74%), Gaps = 1/82 (1%)

Query: 129 FARISTSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTET 188
           F    +SG     +K+L++FLM+E++KA+  AQ+ EFND CWDKC+ +K G +LDSKTET
Sbjct: 4   FGDSFSSGEHKAGDKELQEFLMVEKQKAQFNAQIHEFNDFCWDKCV-EKTGNKLDSKTET 62

Query: 189 CIVNCVDRFIDISMFIANRLTQ 210
           C+ NCVDRFID+S+ I NR  Q
Sbjct: 63  CLTNCVDRFIDVSLLITNRFAQ 84

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170066886|ref|XP_001868262.1| mitochondrial import inner membrane translocase subunit Tim8 A [Culex quinquefasciatus] gi|167863070|gb|EDS26453.1| mitochondrial import inner membrane translocase subunit Tim8 A [Culex quinquefasciatus]

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 59/71 (83%), Gaps = 1/71 (1%)

Query: 140 NSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFID 199
           N + +L+DFLM E++KA+++AQ+ EFNDICW+KCM DKP  +LDS+TETC+ NCV+RFID
Sbjct: 12  NVDPELQDFLMAEKQKAQLSAQIHEFNDICWEKCM-DKPSNKLDSRTETCLNNCVNRFID 70

Query: 200 ISMFIANRLTQ 210
            S+FIA R  Q
Sbjct: 71  TSLFIATRFAQ 81

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312372807|gb|EFR20685.1| hypothetical protein AND_19675 [Anopheles darlingi]

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 59/78 (75%), Gaps = 1/78 (1%)

Query: 133 STSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVN 192
           S+ G K   + +L+DFLM E E+A+++AQ+ EF DICWDKC+ DKPG +LDS+TE+C+ N
Sbjct: 6   SSEGSKPAVDPELQDFLMAENERARLSAQIHEFTDICWDKCV-DKPGSKLDSRTESCLSN 64

Query: 193 CVDRFIDISMFIANRLTQ 210
           CV+RF+D S+ I  R  Q
Sbjct: 65  CVNRFVDTSLLITQRFAQ 82

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118785374|ref|XP_314568.3| AGAP010606-PA [Anopheles gambiae str. PEST] gi|116128054|gb|EAA09982.3| AGAP010606-PA [Anopheles gambiae str. PEST]

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 58/73 (79%), Gaps = 1/73 (1%)

Query: 138 KANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRF 197
           KAN + +L+DFLM E E+A+++AQ+ EFNDICWDKC+ +KP  +LDS+TETC+ NCV+RF
Sbjct: 11  KANVDPELQDFLMAENERARLSAQIHEFNDICWDKCV-EKPSNKLDSRTETCLANCVNRF 69

Query: 198 IDISMFIANRLTQ 210
           +D S+ I  R  Q
Sbjct: 70  VDTSLLITQRFAQ 82

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170066884|ref|XP_001868261.1| mitochondrial inner membrane protein translocase, 8kD-subunit [Culex quinquefasciatus] gi|167863069|gb|EDS26452.1| mitochondrial inner membrane protein translocase, 8kD-subunit [Culex quinquefasciatus]

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 58/71 (81%), Gaps = 1/71 (1%)

Query: 140 NSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFID 199
           N + +L+DFLM E++KA+++AQ+ EFNDICW+KCM DKP  +LDS+TETC+ NCV+RFID
Sbjct: 12  NVDPELQDFLMAEKQKAQLSAQIHEFNDICWEKCM-DKPSNKLDSRTETCLNNCVNRFID 70

Query: 200 ISMFIANRLTQ 210
            S+F A R  Q
Sbjct: 71  TSLFTATRFAQ 81

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605529|gb|EHJ64660.1| translocase of inner mitochondrial membrane 8-like protein b [Danaus plexippus]

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 140 NSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFID 199
             + +L+DFL+ E++KA+  AQ+ EFND CWDKC+ DKPG +LDS+TETCI NCV+RFID
Sbjct: 4   GGDSELQDFLIAEKQKAQFNAQIHEFNDFCWDKCV-DKPGAKLDSRTETCISNCVERFID 62

Query: 200 ISMFIANRLTQ 210
           +S+ I NR  Q
Sbjct: 63  VSLLITNRFAQ 73

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714941|ref|XP_003395980.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim8-like [Bombus terrestris]

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 141 SNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDI 200
           +  +L++F M E++KA++ AQ+ EFNDICW+KC+ DKPG +LDS+TETC+ NCVDRFID+
Sbjct: 13  AEAELQEFFMAEKQKAQIQAQIHEFNDICWEKCV-DKPGVKLDSRTETCLSNCVDRFIDV 71

Query: 201 SMFIANRLTQ 210
           S+ I NR  Q
Sbjct: 72  SLLITNRFAQ 81

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
FB|FBgn0027359	88	Tim8 "Tim8" [Drosophila melano	0.328	0.806	0.513	2.8e-18
ZFIN|ZDB-GENE-031019-1	95	timm8b "translocase of inner m	0.342	0.778	0.513	2.5e-17
ZFIN|ZDB-GENE-040801-158	90	timm8a "translocase of inner m	0.370	0.888	0.458	8.6e-17
UNIPROTKB|F1NIC5	96	TIMM8A "Uncharacterized protei	0.351	0.791	0.474	7.7e-16
UNIPROTKB|O60220	97	TIMM8A "Mitochondrial import i	0.351	0.783	0.474	1.3e-15
UNIPROTKB|Q3ZBS8	97	TIMM8A "Mitochondrial import i	0.351	0.783	0.461	1.6e-15
UNIPROTKB|E2RPC9	97	TIMM8A "Uncharacterized protei	0.351	0.783	0.461	1.6e-15
UNIPROTKB|Q3SZ93	83	TIMM8B "Mitochondrial import i	0.305	0.795	0.492	2.6e-15
UNIPROTKB|J9P4N5	83	TIMM8B "Uncharacterized protei	0.305	0.795	0.492	2.6e-15
UNIPROTKB|G3XAN8	98	TIMM8B "Translocase of inner m	0.305	0.673	0.492	2.6e-15

FB|FBgn0027359 Tim8 "Tim8" [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 37/72 (51%), Positives = 56/72 (77%)

Query:   139 ANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFI 198
             + ++K+L++FL++E++KA++ AQ+ EFN+ICW+KC+  KP  +LD  TETC+ NCVDRFI
Sbjct:     8 SGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCI-GKPSTKLDHATETCLSNCVDRFI 66

Query:   199 DISMFIANRLTQ 210
             D S+ I  R  Q
Sbjct:    67 DTSLLITQRFAQ 78

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS;NAS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

ZFIN|ZDB-GENE-031019-1 timm8b "translocase of inner mitochondrial membrane 8 homolog B (yeast)" [Danio rerio (taxid:7955)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 39/76 (51%), Positives = 56/76 (73%)

Query:   135 SGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCV 194
             S  KA +  +L+  L +E++KA+  AQ+  F D+CWDKC+ DKP  +LDS+TETC+V+CV
Sbjct:    15 SSEKAEA-AELQRMLAVEQQKAQFQAQVHNFTDVCWDKCV-DKPSSKLDSRTETCLVSCV 72

Query:   195 DRFIDISMFIANRLTQ 210
             +RFID ++ I NR TQ
Sbjct:    73 ERFIDTTLTITNRFTQ 88

GO:0006810 "transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-040801-158 timm8a "translocase of inner mitochondrial membrane 8 homolog A (yeast)" [Danio rerio (taxid:7955)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 39/85 (45%), Positives = 57/85 (67%)

Query:   132 ISTSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIV 191
             + T G+   ++  L+ F+ +E +K +    + +  ++CW+KCM DKPG +LDS+TE C V
Sbjct:     1 MDTQGVA--TDPQLQQFIEIESQKQRFQQLVHQMTEVCWEKCM-DKPGPKLDSRTEVCFV 57

Query:   192 NCVDRFIDISMFIANRL--TQRTNG 214
             NCV+RFID S FI NRL  TQR+ G
Sbjct:    58 NCVERFIDTSQFILNRLEQTQRSRG 82

GO:0046872 "metal ion binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1NIC5 TIMM8A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 37/78 (47%), Positives = 52/78 (66%)

Query:   133 STSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVN 192
             S  GL   ++  L+ F+ +E +K +    + +  ++CW+KCM DKPG +LDS+ ETC VN
Sbjct:     7 SGGGL-GGADPQLQRFIEVETQKQRFQQLVHQMTELCWEKCM-DKPGPKLDSRAETCFVN 64

Query:   193 CVDRFIDISMFIANRLTQ 210
             CV+RFID S FI NRL Q
Sbjct:    65 CVERFIDTSQFILNRLEQ 82

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

UNIPROTKB|O60220 TIMM8A "Mitochondrial import inner membrane translocase subunit Tim8 A" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 37/78 (47%), Positives = 52/78 (66%)

Query:   133 STSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVN 192
             S +GL A  +  L+ F+ +E +K +    + +  ++CW+KCM DKPG +LDS+ E C VN
Sbjct:     8 SAAGLGA-VDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCM-DKPGPKLDSRAEACFVN 65

Query:   193 CVDRFIDISMFIANRLTQ 210
             CV+RFID S FI NRL Q
Sbjct:    66 CVERFIDTSQFILNRLEQ 83

GO:0046872 "metal ion binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0072321 "chaperone-mediated protein transport" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q3ZBS8 TIMM8A "Mitochondrial import inner membrane translocase subunit Tim8 A" [Bos taurus (taxid:9913)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 36/78 (46%), Positives = 52/78 (66%)

Query:   133 STSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVN 192
             S +GL  + +  L+ F+ +E +K +    + +  ++CW+KCM DKPG +LDS+ E C VN
Sbjct:     8 SAAGL-GSVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCM-DKPGPKLDSRAEACFVN 65

Query:   193 CVDRFIDISMFIANRLTQ 210
             CV+RFID S FI NRL Q
Sbjct:    66 CVERFIDTSQFILNRLEQ 83

GO:0005739 "mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E2RPC9 TIMM8A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 36/78 (46%), Positives = 52/78 (66%)

Query:   133 STSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVN 192
             S +GL  + +  L+ F+ +E +K +    + +  ++CW+KCM DKPG +LDS+ E C VN
Sbjct:     8 SAAGL-GSVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCM-DKPGPKLDSRAEACFVN 65

Query:   193 CVDRFIDISMFIANRLTQ 210
             CV+RFID S FI NRL Q
Sbjct:    66 CVERFIDTSQFILNRLEQ 83

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q3SZ93 TIMM8B "Mitochondrial import inner membrane translocase subunit Tim8 B" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 33/67 (49%), Positives = 50/67 (74%)

Query:   144 DLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMF 203
             +L+  +  E++KA+ TAQ+  F ++CWDKC+ +KPG RLDS+TE C+ +CVDRFID ++ 
Sbjct:    11 ELQRLVAAEQQKAQFTAQVHHFMELCWDKCV-EKPGNRLDSRTENCLSSCVDRFIDTTLA 69

Query:   204 IANRLTQ 210
             I +R  Q
Sbjct:    70 ITSRFAQ 76

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|J9P4N5 TIMM8B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 33/67 (49%), Positives = 50/67 (74%)

Query:   144 DLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMF 203
             +L+  +  E++KA+ TAQ+  F ++CWDKC+ +KPG RLDS+TE C+ +CVDRFID ++ 
Sbjct:    11 ELQRLVAAEQQKAQFTAQVHHFMELCWDKCV-EKPGNRLDSRTENCLSSCVDRFIDTTLA 69

Query:   204 IANRLTQ 210
             I +R  Q
Sbjct:    70 ITSRFAQ 76

GO:0046872 "metal ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|G3XAN8 TIMM8B "Translocase of inner mitochondrial membrane 8 homolog B (Yeast)" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 33/67 (49%), Positives = 50/67 (74%)

Query:   144 DLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMF 203
             +L+  +  E++KA+ TAQ+  F ++CWDKC+ +KPG RLDS+TE C+ +CVDRFID ++ 
Sbjct:    26 ELQRLVAAEQQKAQFTAQVHHFMELCWDKCV-EKPGNRLDSRTENCLSSCVDRFIDTTLA 84

Query:   204 IANRLTQ 210
             I +R  Q
Sbjct:    85 ITSRFAQ 91

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y1A3	TIM8_DROME	No assigned EC number	0.5138	0.3287	0.8068	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	216
pfam02953	66	pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc fin	5e-19
pfam02953	66	pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc fin	5e-12

>gnl|CDD|202484 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger

 Score = 77.3 bits (191), Expect = 5e-19
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 146 EDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIA 205
           +  LM E +KA     + +  + C+ KC+T  PG  L    E+C+  CV++++D +  ++
Sbjct: 1   QQQLMQELQKANFQELINKLTENCFKKCVTKFPGSSLSKGEESCLDRCVEKYLDANNRVS 60

Query: 206 NRLTQR 211
            RL +R
Sbjct: 61  KRLQER 66

Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein TIMM8A. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import. Members of this family seem to be localised to the mitochondrial intermembrane space. Length = 66

>gnl|CDD|202484 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger

 Score = 58.8 bits (143), Expect = 5e-12
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 1  MLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSF 48
          M E +KA     + +  + C+ KC+T  PG  L    E+C+  CV+ +
Sbjct: 5  MQELQKANFQELINKLTENCFKKCVTKFPGSSLSKGEESCLDRCVEKY 52

Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein TIMM8A. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import. Members of this family seem to be localised to the mitochondrial intermembrane space. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG3489|consensus	86		99.91
KOG1733|consensus	97		99.85
KOG1733|consensus	97		99.85
PF02953	66	zf-Tim10_DDP: Tim10/DDP family zinc finger; InterP	99.85
KOG3489|consensus	86		99.81
PF02953	66	zf-Tim10_DDP: Tim10/DDP family zinc finger; InterP	99.74
KOG3480|consensus	90		99.65
KOG3479|consensus	83		99.61
KOG3480|consensus	90		99.33
KOG3479|consensus	83		99.3
KOG3377|consensus	143		90.73
PF05811	131	DUF842: Eukaryotic protein of unknown function (DU	89.15

>KOG3489|consensus

Probab=99.91  E-value=4.4e-24  Score=160.91  Aligned_cols=76  Identities=49%  Similarity=0.993  Sum_probs=72.8

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13362        138 KANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNG  214 (216)
Q Consensus       138 ~~~~~~elqq~l~qe~q~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~  214 (216)
                      +++.++|+++||++|.|++++++++|+||+.||+||| .+|+++||++|++|+.|||+||||++.+|.+||+.+.++
T Consensus         7 l~~~~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi-~~~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~~~   82 (86)
T KOG3489|consen    7 LDANDPELQQFLEAETQKQKFQEQVHQFTEICWDKCI-EKPGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMNQG   82 (86)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3788999999999999999999999999999999999 788899999999999999999999999999999998775

>KOG1733|consensus

Probab=99.85  E-value=1.9e-21  Score=148.69  Aligned_cols=64  Identities=30%  Similarity=0.564  Sum_probs=60.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHH-----HHHHhHHHHHHHHhcCC
Q psy13362          2 LEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFP-----VFHHFNKPSQIERLNFD   66 (216)
Q Consensus         2 ~E~~~a~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~-----~s~~~~~Rlq~~~~~~~   66 (216)
                      .+.|+|++|+||++|+++||+|||+ +||++|+++|++||++|++|||     |+++|+.|||+|+++..
T Consensus        28 qqlAvAnAqeLv~kisekCf~KCit-~PGssl~~~e~~Cis~CmdRyMdawniVSrty~sRlQre~a~~~   96 (97)
T KOG1733|consen   28 QQLAVANAQELVSKISEKCFDKCIT-KPGSSLDSSEKSCISRCMDRYMDAWNIVSRTYISRLQREQASGE   96 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            4679999999999999999999996 9999999999999999999998     89999999999998754

>KOG1733|consensus

Probab=99.85  E-value=7.7e-21  Score=145.42  Aligned_cols=73  Identities=26%  Similarity=0.551  Sum_probs=69.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy13362        142 NKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGL  215 (216)
Q Consensus       142 ~~elqq~l~qe~q~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~~  215 (216)
                      +.+++.++.++++.++.++++++++++||+||| ++|+++|++.|+.||++|++||||+|+.|++.|..++|+.
T Consensus        19 ~~~~m~qVkqqlAvAnAqeLv~kisekCf~KCi-t~PGssl~~~e~~Cis~CmdRyMdawniVSrty~sRlQre   91 (97)
T KOG1733|consen   19 EGELMNQVKQQLAVANAQELVSKISEKCFDKCI-TKPGSSLDSSEKSCISRCMDRYMDAWNIVSRTYISRLQRE   91 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            449999999999999999999999999999999 7999999999999999999999999999999999888753

>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.85  E-value=3.8e-21  Score=137.49  Aligned_cols=66  Identities=36%  Similarity=0.732  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13362        146 EDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQR  211 (216)
Q Consensus       146 qq~l~qe~q~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~  211 (216)
                      |++++++++++.++++++++++.||+|||+++|+++||++|++||+||++||+|++.+|+++|+++
T Consensus         1 q~~~~~~~q~~~~~~~~~~~t~~Cf~kCv~~~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~~   66 (66)
T PF02953_consen    1 QQQLMQEQQMKDFQELFNKLTERCFDKCVTKFPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQM   66 (66)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            468899999999999999999999999997779999999999999999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.

>KOG3489|consensus

Probab=99.81  E-value=7e-20  Score=138.22  Aligned_cols=63  Identities=40%  Similarity=0.774  Sum_probs=58.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHHHHhcC
Q psy13362          2 LEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQIERLNF   65 (216)
Q Consensus         2 ~E~~~a~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~~~~~~   65 (216)
                      .|++||++|++||+||+.||+||| .+|+++||++|++||.|||+|||+.. .+++|++++....
T Consensus        20 ~E~qk~k~~~~VHqft~~CWdKCi-~~~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~~~~   83 (86)
T KOG3489|consen   20 AETQKQKFQEQVHQFTEICWDKCI-EKPGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMNQGH   83 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-cCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            589999999999999999999999 58999999999999999999999655 7899999987754

>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.74  E-value=4.9e-18  Score=121.41  Aligned_cols=59  Identities=32%  Similarity=0.571  Sum_probs=51.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHH
Q psy13362          2 LEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQI   60 (216)
Q Consensus         2 ~E~~~a~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~   60 (216)
                      .|.+++.++.++++|++.||+|||+.+|+++||++|++||+||++||+.+. .+++|+++
T Consensus         6 ~~~q~~~~~~~~~~~t~~Cf~kCv~~~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~   65 (66)
T PF02953_consen    6 QEQQMKDFQELFNKLTERCFDKCVTKFPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQ   65 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS-TTSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            578999999999999999999999867999999999999999999999655 67888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.

>KOG3480|consensus

Probab=99.65  E-value=9.4e-16  Score=116.42  Aligned_cols=65  Identities=23%  Similarity=0.523  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13362        150 MLEREKAKMTAQMFEFNDICWDKCMTDK-PGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNG  214 (216)
Q Consensus       150 ~qe~q~~q~q~l~~klT~~CF~KCV~~~-~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~  214 (216)
                      ++|++...+.+++|+++..|++|||+.. ..++|+++|..||||||.||++++..|+++++.+.+.
T Consensus        16 ~Ae~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~~~~   81 (90)
T KOG3480|consen   16 MAELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAMGQG   81 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            7888999999999999999999999855 9999999999999999999999999999999998765

>KOG3479|consensus

Probab=99.61  E-value=1.6e-15  Score=114.17  Aligned_cols=62  Identities=18%  Similarity=0.575  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13362        153 REKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNG  214 (216)
Q Consensus       153 ~q~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~  214 (216)
                      .+...|--+||++|+.||..||+++..++|+++|++|+.+|++||++.++||++||++....
T Consensus         6 k~lkDFl~~YN~ltE~CF~dCV~dft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~~~   67 (83)
T KOG3479|consen    6 KQLKDFLTLYNKLTELCFSDCVDDFTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQAA   67 (83)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666689999999999999999999999999999999999999999999999997543

>KOG3480|consensus

Probab=99.33  E-value=2.7e-12  Score=97.69  Aligned_cols=61  Identities=21%  Similarity=0.355  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCC-CCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHHHHh
Q psy13362          3 EREKAKMTAQMFEFNDICWDKCMTD-KPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQIERL   63 (216)
Q Consensus         3 E~~~a~~q~lv~~lt~~Cf~KCi~~-~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~~~~   63 (216)
                      |.+..-+-+++|+|+..|++|||+. +..+.|+++|+.||++||.||+.++ .+++++|.+..
T Consensus        18 e~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~~~   80 (90)
T KOG3480|consen   18 ELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAMGQ   80 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3334444568999999999999975 7889999999999999999999777 67999988654

>KOG3479|consensus

Probab=99.30  E-value=5.8e-12  Score=95.01  Aligned_cols=57  Identities=19%  Similarity=0.483  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHH-HHHHhHHHHHHHHhc
Q psy13362          8 KMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFP-VFHHFNKPSQIERLN   64 (216)
Q Consensus         8 ~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~-~s~~~~~Rlq~~~~~   64 (216)
                      .|-.+||+||+.||..||+++....|+++|++|+.+|++||+ .+++++.|+|+.+..
T Consensus        10 DFl~~YN~ltE~CF~dCV~dft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~~~   67 (83)
T KOG3479|consen   10 DFLTLYNKLTELCFSDCVDDFTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQAA   67 (83)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344579999999999999999999999999999999999999 556899999997653

>KOG3377|consensus

Probab=90.73  E-value=1.3  Score=36.90  Aligned_cols=70  Identities=17%  Similarity=0.291  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy13362        145 LEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQ----RLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGLD  216 (216)
Q Consensus       145 lqq~l~qe~q~~q~q~l~~klT~~CF~KCV~~~~~~----~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~~~  216 (216)
                      -|+++..|  +.+||+-+++-.-.|-||=-..++.+    +.-.....|+.+||+.++.+---+.+++.+.+..++
T Consensus        70 aQ~~~~~E--l~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~al~~~~  143 (143)
T KOG3377|consen   70 AQQYVQSE--LGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKEALSIGG  143 (143)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Confidence            35555555  45699988888888887743333222    355566789999999999999999999988766543

>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function

Probab=89.15  E-value=2.5  Score=34.28  Aligned_cols=66  Identities=18%  Similarity=0.402  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13362        144 DLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDK-PGQ---RLDSKTETCIVNCVDRFIDISMFIANRLTQR  211 (216)
Q Consensus       144 elqq~l~qe~q~~q~q~l~~klT~~CF~KCV~~~-~~~---~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~  211 (216)
                      ..+..+..|+  .+||+-+++-.-.|.+|=-..+ ++.   .....=..|+..||++|+..---|.+|+.+.
T Consensus        61 ~aq~~vq~El--~~FQ~rlqrC~~~C~dk~~d~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~~  130 (131)
T PF05811_consen   61 QAQNYVQNEL--EQFQNRLQRCVMHCQDKAKDKMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKKS  130 (131)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence            4455555554  4688888887778888744222 111   1122235799999999999999999988753

The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
3cjh_B	64	Tim8-Tim13 Complex Length = 64		4e-06

>pdb|3CJH|B Chain B, Tim8-Tim13 Complex Length = 64

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 151 LEREKAKMTAQM--FEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRL 208
           LE E +K   QM   +F +IC+ KC+       L S+ E C+ NCV+RF+D ++ I N L
Sbjct: 1   LEGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGL 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
3cjh_B	64	Mitochondrial import inner membrane translocase S	4e-21
3cjh_B	64	Mitochondrial import inner membrane translocase S	9e-14
3dxr_A	89	Mitochondrial import inner membrane translocase su	2e-08
3dxr_A	89	Mitochondrial import inner membrane translocase su	1e-04
2bsk_B	90	Mitochondrial import inner membrane translocase su	3e-08
3dxr_B	95	Mitochondrial import inner membrane translocase su	9e-07
3cjh_A	64	Mitochondrial import inner membrane translocase S	2e-06
2bsk_A	89	Mitochondrial import inner membrane translocase su	4e-05

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 82.2 bits (203), Expect = 4e-21
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 149 LMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRL 208
           L  E  K K+   + +F +IC+ KC+       L S+ E C+ NCV+RF+D ++ I N L
Sbjct: 1   LEGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGL 60

Query: 209 TQ 210
             
Sbjct: 61  QN 62

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 62.9 bits (153), Expect = 9e-14
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 1  MLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSF 48
            E  K K+   + +F +IC+ KC+       L S+ E C+ NCV+ F
Sbjct: 2  EGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRF 49

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 89

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 142 NKDLEDFLMLEREKAKMTAQMFEFN---DICWDKCMTDKPGQRLDSKTETCIVNCVDRFI 198
           N   +       E+ +M   M  ++   + C+  C+ D    +L +K +TCI+ C ++F+
Sbjct: 7   NSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFL 66

Query: 199 DISMFIANRLTQ 210
             S  +  R  +
Sbjct: 67  KHSERVGQRFQE 78

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 89

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 5  EKAKMTAQMFEFN---DICWDKCMTDKPGQRLDSKTETCIVNCVDSF 48
          E+ +M   M  ++   + C+  C+ D    +L +K +TCI+ C + F
Sbjct: 19 EQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKF 65

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 90

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 142 NKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQR-LDSKTETCIVNCVDRFIDI 200
           +      L  E E   M          C  KC+     +  L      C+  CV +++DI
Sbjct: 2   DPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDI 61

Query: 201 SMFIANRLTQRT 212
              +  +LT+ +
Sbjct: 62  HERMGKKLTELS 73

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 95

 Score = 45.0 bits (106), Expect = 9e-07
 Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 146 EDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQR-LDSKTETCIVNCVDRFIDISMFI 204
           +     E E   +T    +  + C+ KC+     +  L+    +C+  CV ++ + ++ +
Sbjct: 19  QKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQV 78

Query: 205 ANRLTQR 211
              + + 
Sbjct: 79  GENMQKM 85

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 156 AKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFID----ISMFIANRLTQ- 210
           A  T  + + ++ C++KC+T  P     ++ + CI  C+ +++     IS    +R+   
Sbjct: 3   ANATELVNKISENCFEKCLT-SPY---ATRNDACIDQCLAKYMRSWNVISKAYISRIQNA 58

Query: 211 RTNG 214
             +G
Sbjct: 59  SASG 62

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 89

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 9/65 (13%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 149 LMLEREKAKMTAQMFEFN---DICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIA 205
           +    +  +    +  +N   + C+  C+ D   + +  +  TC  +C+ +++ ++  I+
Sbjct: 5   IPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRIS 64

Query: 206 NRLTQ 210
            R  +
Sbjct: 65  MRFQE 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
3dxr_A	89	Mitochondrial import inner membrane translocase su	99.88
3cjh_B	64	Mitochondrial import inner membrane translocase S	99.87
2bsk_B	90	Mitochondrial import inner membrane translocase su	99.86
3dxr_B	95	Mitochondrial import inner membrane translocase su	99.86
3cjh_B	64	Mitochondrial import inner membrane translocase S	99.81
2bsk_A	89	Mitochondrial import inner membrane translocase su	99.81
3dxr_B	95	Mitochondrial import inner membrane translocase su	99.78
3cjh_A	64	Mitochondrial import inner membrane translocase S	99.78
3dxr_A	89	Mitochondrial import inner membrane translocase su	99.77
2bsk_B	90	Mitochondrial import inner membrane translocase su	99.74
2bsk_A	89	Mitochondrial import inner membrane translocase su	99.73
3cjh_A	64	Mitochondrial import inner membrane translocase S	99.72

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.88  E-value=7.7e-23  Score=154.66  Aligned_cols=81  Identities=17%  Similarity=0.496  Sum_probs=64.1

Q ss_pred             ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13362        134 TSGLKANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTN  213 (216)
Q Consensus       134 ~~g~~~~~~~elqq~l~qe~q~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q  213 (216)
                      +.+++++.+++++++++ +.+.+.+.++|+++|+.||+|||+++|+++|+++|.+||+|||+|||+++++|++||+++.+
T Consensus         3 m~~l~~~~~~el~~~~~-e~q~k~~~~l~~~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~   81 (89)
T 3dxr_A            3 MDALNSKEQQEFQKVVE-QKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA   81 (89)
T ss_dssp             -----------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788899998886 55778888899999999999999877999999999999999999999999999999999876


Q ss_pred             cC
Q psy13362        214 GL  215 (216)
Q Consensus       214 ~~  215 (216)
                      .+
T Consensus        82 ~~   83 (89)
T 3dxr_A           82 AL   83 (89)
T ss_dssp             C-
T ss_pred             HH
Confidence            54

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.8e-22  Score=143.89  Aligned_cols=63  Identities=35%  Similarity=0.705  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13362        149 LMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQR  211 (216)
Q Consensus       149 l~qe~q~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~  211 (216)
                      |++|+++++++++++++++.||+|||+++|+++|+++|++||+|||+||||++++|++||+++
T Consensus         1 i~~E~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~   63 (64)
T 3cjh_B            1 LEGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT   63 (64)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467899999999999999999999997679999999999999999999999999999999986

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.86  E-value=1.6e-22  Score=153.09  Aligned_cols=74  Identities=20%  Similarity=0.341  Sum_probs=59.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy13362        142 NKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMT-DKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGL  215 (216)
Q Consensus       142 ~~elqq~l~qe~q~~q~q~l~~klT~~CF~KCV~-~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~~  215 (216)
                      ++++++++++|++++.++++++++++.||+|||+ ++|+++|+++|++||+|||+||||++++|++||+++.++.
T Consensus         2 ~~e~~~~~~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~   76 (90)
T 2bsk_B            2 DPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQD   76 (90)
T ss_dssp             -----------CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999995 5699999999999999999999999999999999987653

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5e-22  Score=152.29  Aligned_cols=72  Identities=14%  Similarity=0.420  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy13362        145 LEDFLMLEREKAKMTAQMFEFNDICWDKCMT-DKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGLD  216 (216)
Q Consensus       145 lqq~l~qe~q~~q~q~l~~klT~~CF~KCV~-~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~~~  216 (216)
                      .++++++|+|++.++++++++|++||+|||+ ++++++|+++|++||+|||+||||++++|++||+++.++++
T Consensus        18 ~qk~~~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q~~~   90 (95)
T 3dxr_B           18 QQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQSFN   90 (95)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3557789999999999999999999999997 56999999999999999999999999999999999988753

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.7e-20  Score=133.58  Aligned_cols=61  Identities=28%  Similarity=0.525  Sum_probs=53.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHHH
Q psy13362          1 MLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQIE   61 (216)
Q Consensus         1 ~~E~~~a~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~~   61 (216)
                      +.|+++++++++||+||++||+|||+.+|+++||++|++||+|||+|||.++ .+++|+++.
T Consensus         2 ~~E~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~   63 (64)
T 3cjh_B            2 EGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT   63 (64)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3688999999999999999999999766999999999999999999999655 778898874

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.81  E-value=4.4e-20  Score=139.63  Aligned_cols=63  Identities=13%  Similarity=0.400  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13362        152 EREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNG  214 (216)
Q Consensus       152 e~q~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~  214 (216)
                      .++.++++++++++|+.||+|||+++|+++|+++|++||+|||+||||++++|++||+++.+.
T Consensus        11 ~~q~~~~~~l~n~lte~Cf~KCv~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~   73 (89)
T 2bsk_A           11 IKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQ   73 (89)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccCCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566999999999999999997779999999999999999999999999999999998754

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2.2e-19  Score=137.54  Aligned_cols=65  Identities=18%  Similarity=0.381  Sum_probs=55.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccC-CCCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHHHHhcCC
Q psy13362          2 LEREKAKMTAQMFEFNDICWDKCMT-DKPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQIERLNFD   66 (216)
Q Consensus         2 ~E~~~a~~q~lv~~lt~~Cf~KCi~-~~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~~~~~~~   66 (216)
                      .|.+++.++++||+||++||+|||+ ++|+++||++|++||+|||+|||.++ ++++|+++..++++
T Consensus        24 aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q~~~   90 (95)
T 3dxr_B           24 AEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQSFN   90 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999997 46899999999999999999999655 78999999887665

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.6e-19  Score=129.00  Aligned_cols=58  Identities=21%  Similarity=0.543  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy13362        154 EKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGL  215 (216)
Q Consensus       154 q~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~~  215 (216)
                      ++++++++++++++.||+|||+ +|   |+++|++||+|||+||||++++|++||.++.++.
T Consensus         1 ~~a~~~~l~~~lt~~Cf~kCv~-~~---L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~~~   58 (64)
T 3cjh_A            1 AVANATELVNKISENCFEKCLT-SP---YATRNDACIDQCLAKYMRSWNVISKAYISRIQNA   58 (64)
T ss_dssp             ----CHHHHHHHHHHHHHHHCC-TT---CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred             ChHHHHHHHHHHHHHHHHHHCC-Cc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4678999999999999999994 55   9999999999999999999999999999988764

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.77  E-value=7.4e-19  Score=132.82  Aligned_cols=66  Identities=17%  Similarity=0.404  Sum_probs=57.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHHHHhcCCC
Q psy13362          2 LEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQIERLNFDD   67 (216)
Q Consensus         2 ~E~~~a~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~~~~~~~~   67 (216)
                      .|.+.++++++||+||++||+|||+++|+++||++|++||+|||+|||.+. ++++|+++.++.+++
T Consensus        19 ~e~q~k~~~~l~~~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~~~~~   85 (89)
T 3dxr_A           19 EQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNAALGQ   85 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            467788899999999999999999877999999999999999999999555 789999998766553

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.74  E-value=1.2e-18  Score=131.68  Aligned_cols=64  Identities=19%  Similarity=0.320  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhccC-CCCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHHHHhcC
Q psy13362          2 LEREKAKMTAQMFEFNDICWDKCMT-DKPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQIERLNF   65 (216)
Q Consensus         2 ~E~~~a~~q~lv~~lt~~Cf~KCi~-~~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~~~~~~   65 (216)
                      .|.++++++++||+||++||+|||+ ++|+++||++|++||+|||+|||.++ ++++|+++..+..
T Consensus        11 ~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~   76 (90)
T 2bsk_B           11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQD   76 (90)
T ss_dssp             --CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778899999999999999999995 47999999999999999999999555 7788998876543

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.73  E-value=4e-18  Score=128.86  Aligned_cols=60  Identities=12%  Similarity=0.347  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHHHHh
Q psy13362          4 REKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQIERL   63 (216)
Q Consensus         4 ~~~a~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~~~~   63 (216)
                      ++.++++++||+||++||+|||+++|+++||++|++||+|||+|||.++ .+++|+++.+.
T Consensus        12 ~q~~~~~~l~n~lte~Cf~KCv~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~   72 (89)
T 2bsk_A           12 KQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHI   72 (89)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999767999999999999999999999555 78999988764

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.5e-18  Score=123.95  Aligned_cols=53  Identities=21%  Similarity=0.492  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHHH
Q psy13362          5 EKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQIE   61 (216)
Q Consensus         5 ~~a~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~~   61 (216)
                      |+|++|++||+||+.||+|||+ +|   ||++|++||++||+|||.+. .+++|+++.
T Consensus         1 ~~a~~~~l~~~lt~~Cf~kCv~-~~---L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~   54 (64)
T 3cjh_A            1 AVANATELVNKISENCFEKCLT-SP---YATRNDACIDQCLAKYMRSWNVISKAYISR   54 (64)
T ss_dssp             ----CHHHHHHHHHHHHHHHCC-TT---CCSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHCC-Cc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999995 66   99999999999999999433 455565553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d2bska1	73	g.83.1.1 (A:13-85) Mitochondrial import inner memb	4e-12
d2bska1	73	g.83.1.1 (A:13-85) Mitochondrial import inner memb	1e-07
d2bskb1	65	g.83.1.1 (B:13-77) Mitochondrial import inner memb	2e-10
d2bskb1	65	g.83.1.1 (B:13-77) Mitochondrial import inner memb	2e-05

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (139), Expect = 4e-12
 Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 157 KMTAQMF-EFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQ 210
           K     + +  + C+  C+ D   + +  +  TC  +C+ +++ ++  I+ R  +
Sbjct: 3   KEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQE 57

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 8  KMTAQMF-EFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFHHF 54
          K     + +  + C+  C+ D   + +  +  TC  +C+  +      
Sbjct: 3  KEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQR 50

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (128), Expect = 2e-10
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 157 KMTAQMFE-FNDICWDKCMT-DKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRT 212
           +M A M+      C  KC+        L      C+  CV +++DI   +  +LT+ +
Sbjct: 4   EMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELS 61

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 8  KMTAQMFE-FNDICWDKCMT-DKPGQRLDSKTETCIVNCVDSF 48
          +M A M+      C  KC+        L      C+  CV  +
Sbjct: 4  EMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKY 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d2bskb1	65	Mitochondrial import inner membrane translocase su	99.81
d2bska1	73	Mitochondrial import inner membrane translocase su	99.79
d2bska1	73	Mitochondrial import inner membrane translocase su	99.73
d2bskb1	65	Mitochondrial import inner membrane translocase su	99.71

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.5e-21  Score=135.14  Aligned_cols=62  Identities=19%  Similarity=0.417  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcC-CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy13362        155 KAKMTAQMFEFNDICWDKCMT-DKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGLD  216 (216)
Q Consensus       155 ~~q~q~l~~klT~~CF~KCV~-~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~~~  216 (216)
                      +..++++++++|+.||+|||+ ++++++|+++|.+||+||++||||++++|++||+++.++.+
T Consensus         3 ~~~~~~m~nklt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~C~~ky~d~~~~v~~r~q~~~~~~~   65 (65)
T d2bskb1           3 VEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQDE   65 (65)
T ss_dssp             TTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            345899999999999999995 45799999999999999999999999999999999998764

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.2e-20  Score=132.82  Aligned_cols=60  Identities=13%  Similarity=0.410  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13362        155 KAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNG  214 (216)
Q Consensus       155 ~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~  214 (216)
                      ++.+..++|++|+.||+|||+++|+++|+++|..||+|||+||++++++|++||+++.++
T Consensus         2 ~kdfl~~yn~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Kf~~~~~~v~~rfqe~q~~   61 (73)
T d2bska1           2 FKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQ   61 (73)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888999999999999998889999999999999999999999999999999997654

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.2e-18  Score=124.60  Aligned_cols=58  Identities=12%  Similarity=0.321  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHHH-HHHhHHHHHHHHh
Q psy13362          6 KAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPV-FHHFNKPSQIERL   63 (216)
Q Consensus         6 ~a~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~~-s~~~~~Rlq~~~~   63 (216)
                      ...+..+||+||+.||+|||+++|+++||++|+.||+|||+|||. ++++++|+|+.++
T Consensus         2 ~kdfl~~yn~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Kf~~~~~~v~~rfqe~q~   60 (73)
T d2bska1           2 FKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHI   60 (73)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999998789999999999999999999995 5588999998765

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.1e-18  Score=119.00  Aligned_cols=57  Identities=18%  Similarity=0.373  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHhccC-CCCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHHHHhc
Q psy13362          8 KMTAQMFEFNDICWDKCMT-DKPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQIERLN   64 (216)
Q Consensus         8 ~~q~lv~~lt~~Cf~KCi~-~~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~~~~~   64 (216)
                      .++++|++||+.||+|||+ ++++++|+++|++||+|||+|||.++ .+++|+|+..+.
T Consensus         5 ~~~~m~nklt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~C~~ky~d~~~~v~~r~q~~~~~   63 (65)
T d2bskb1           5 MMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQ   63 (65)
T ss_dssp             TTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4789999999999999996 35599999999999999999999666 679999997654