Psyllid ID: psy13365

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MDRPNHLGLCKSYDILRGNPWKTLKNHCDSCCDVKILQNEKSQAVHLVSGMVHSALEGKKTFYQVQRHNDNVKLCPQGLGGAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYLIKREEPPLCSCGQRLTIQHIIIECPTLVALRNSIFGSSRQITLSEVLKDSPADTKKVLKFLQYSKLLKLI
Secondary Structure (PSIPRED)
cccccEEEEEcHHHHHHcccccccccHHHcHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHccccccccccccccccHHHHHccccccHHHHHHHHcccccccHHHHccccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHccccHHHHHHcccccccHHEEEcccHHHEEEHcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccccccccccccccccccEEEEEEEEcccccccHHHHccccccccccccccEEEEEEEEccHHHHHHHHHHHcccccccHHHHHccccccHHHHHHHHHHccHHccc
Coil and Loop (DISEMBL)
mdrpnhlglcksydilrgnpwktlknhcdsccdvkilqneKSQAVHLVSGMVHSALEGKKTFYQVQrhndnvklcpqglggaifpnlgsETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFQIkpelgewkssynrKRTLETALARIRLGHTNLTHVylikreepplcscgqrltiQHIIIECPTLVALRNSIFGSSRQITLSevlkdspadTKKVLKFLQYSKLLKLI
Flexible Loop (DISEMBL)
mdrpnhlglCKSYDILRGNPWKTLKNHCDSCCDVKILQNEKSQAVHLVSGMVHSALEGKKTFYQVQRHNDNVKLCPQGLGGAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFqikpelgewkssynrKRTLETALARIRLGHTNLTHVYLIKREEPPLCSCGQRLTIQHIIIECPTLVALRNSIFGSSRQITLsevlkdspadtkkvlkflqyskllkli
Low Complexity Region (SEG)
MDRPNHLGLCKSYDILRGNPWKTLKNHCDSCCDVKILQNEKSQAVHLVSGMVHSALEGKKTFYQVQRHNDNVKLCPQGLGGAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYLIKREEPPLCSCGQRLTIQHIIIECPTLVALRNSIFGSSRQITLSEVLKDSPADTKKVLKFLQYSKLLKLI
Disordered region (IsUnstruct)
******LGLCKSYDILRGNPWKTLKNHCDSCCDVKILQNEKSQAVHLVSGMVHSALEGKKTFYQVQRHNDNVKLCPQGLGGAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYLIKREEPPLCSCGQRLTIQHIIIECPTLVALRNSIFGSSRQITLSEVLK*****TKKVLKFLQYSKL****
Disordered Region (DISOPRED)
***PNHLGLCKSYDIL**********************NEKSQAVHLVSGMVHSALEGKKTFYQVQRHNDN***********IFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYLIKREEPPLCSCGQRLTIQHIIIECPTLVALRNSIFGSSRQITLSEVLKDSPADTKKVLKFLQYSKLLKLI
Disordered Region (DISEMBL)
MDRPNHLGLCKSYDILRGNPWKTLKNHCDSCCDVKILQNEKSQAVHLVSGMVHSALEGKKTFYQVQRHNDNVKLCPQGLGGAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYLIKREEPPLCSCGQRLTIQHIIIECPTLVALRNSIFGSSRQITLSEVLKDSPADTKKVLKFLQYSKLLKLI
Disordered Region (DISPRO)
****NHLGLCKSYDILRGNPWKTLKNHCDSCCDVKILQNEKSQAVHLVSGMVHSALEGKKTFYQVQRHNDNVKLCPQGLGGAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYLIKREEPPLCSCGQRLTIQHIIIECPTLVALRNSIFGSSRQITLSEVLKDSPADTKKVLKFLQYSKLLKLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDRPNHLGLCKSYDILRGNPWKTLKNHCDSCCDVKILQNEKSQAVHLVSGMVHSALEGKKTFYQVQRHNDNVKLCPQGLGGAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYLIKREEPPLCSCGQRLTIQHIIIECPTLVALRNSIFGSSRQITLSEVLKDSPADTKKVLKFLQYSKLLKLI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
427791807	1212	Putative tick transposon, partial [Rhipi	0.467	0.089	0.389	1e-14
427791321	1210	Putative tick transposon, partial [Rhipi	0.476	0.090	0.382	1e-14
427791063	1035	Putative tick transposon, partial [Rhipi	0.406	0.090	0.427	1e-14
443733872	400	hypothetical protein CAPTEDRAFT_197082 [	0.536	0.31	0.367	4e-14
443693558	502	hypothetical protein CAPTEDRAFT_189741,	0.346	0.159	0.444	5e-14
443695973	261	hypothetical protein CAPTEDRAFT_23017, p	0.346	0.306	0.432	2e-13
427798887	1199	Putative tick transposon, partial [Rhipi	0.406	0.078	0.406	3e-13
427798885	1199	Putative tick transposon, partial [Rhipi	0.406	0.078	0.406	3e-13
443721618	471	hypothetical protein CAPTEDRAFT_200496,	0.432	0.212	0.405	4e-13
427798889	1199	Putative tick transposon, partial [Rhipi	0.406	0.078	0.406	4e-13

>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 5/113 (4%)

Query: 90   ETLDLVRTCLKTLPKQIK----NIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETA 145
            +TL  +R  LK   + I+      W+++W    +NKL  +KP LGEWK+  +++R +E  
Sbjct: 1063 KTLTKIRIPLKDSQRTIRLALLAKWQQQWDSCTSNKLHLVKPTLGEWKNCRHQERFIEVI 1122

Query: 146  LARIRLGHTNLTHVYLIKREEPPLCS-CGQRLTIQHIIIECPTLVALRNSIFG 197
            L R+R+GHT+LTH +L+ +EE P+C  C + LT+ HI+I CP +   R   F 
Sbjct: 1123 LCRLRIGHTHLTHNFLLTKEEQPMCEKCQEPLTLIHILILCPNIETQRQKYFS 1175

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 5/115 (4%)

Query: 88   GSETLDLVRTCLKTLPKQIK----NIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLE 143
              +TL  +R  LK   + I+      W+++W    +NKL  +KP LGEWK+  +++R +E
Sbjct: 1058 AHKTLTKIRIPLKDSQRTIRLALLAKWQQQWDSCTSNKLHLVKPTLGEWKNCRHQERFIE 1117

Query: 144  TALARIRLGHTNLTHVYLIKREEPPLCS-CGQRLTIQHIIIECPTLVALRNSIFG 197
              L R+R+GHT+LTH +L+ +EE P+C  C + LT+ HI+I CP +   R   F 
Sbjct: 1118 VILCRLRIGHTHLTHNFLLTKEEQPMCEKCQEPLTLIHILILCPNIETQRQKYFS 1172

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791063|gb|JAA60983.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 2/96 (2%)

Query: 102  LPKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYL 161
            L ++++  W+  W     NKL  IKP+LGEW  +   +RT E  L R+R GHT+ TH YL
Sbjct: 938  LKRKLRAYWQSIWDTQTQNKLHAIKPQLGEWPPASKSRRT-EITLTRLRTGHTHTTHAYL 996

Query: 162  IKREEPPLCS-CGQRLTIQHIIIECPTLVALRNSIF 196
            +   +PP C  CG+ LT+ HI+I+C  L A+R   F
Sbjct: 997  LSGNDPPRCERCGEPLTVLHILIQCNELDAMRRKHF 1032

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443733872|gb|ELU18078.1| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 74/147 (50%), Gaps = 23/147 (15%)

Query: 75  CPQGLGGAIFPNLGSETLDLVR-------TCLKTLPKQ---------IKNIWKREWQQNV 118
           CP  +G      +G+E  DL+        TC   +P            K  W+ +W    
Sbjct: 106 CPSHVGV-----MGNERADLLAKEALSFTTCTIRIPSSDFKPITHEFYKEKWQEQWSSEQ 160

Query: 119 NNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYLIKREEPPLC-SCGQRLT 177
            NKL+ I+P LG+W  S    R  E  LAR R+GH++LTH YL++RE PP+C  C   L+
Sbjct: 161 ENKLYCIQPTLGKWAKSSREIRREEIVLARARIGHSHLTHGYLLRREMPPVCIPCQNILS 220

Query: 178 IQHIIIECPTL-VALRNSIFGSSRQIT 203
           I+HI IEC    + LR  I  S+  IT
Sbjct: 221 IKHIFIECVDFDILLRRLIALSNCDIT 247

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443693558|gb|ELT94903.1| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 106 IKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYLIKRE 165
           +K++W+ EW +  +NKL  I+P + EWK      R  E  LAR R+GH++LTH YL++RE
Sbjct: 227 VKSLWQNEWDEETDNKLHSIQPVISEWKQGPQIDRRGEIVLARARIGHSHLTHGYLLRRE 286

Query: 166 EPPLC-SCGQRLTIQHIIIEC 185
             P C  C   LT++HI+I+C
Sbjct: 287 VAPFCIPCQSLLTVKHILIDC 307

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443695973|gb|ELT96755.1| hypothetical protein CAPTEDRAFT_23017, partial [Capitella teleta]

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 106 IKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYLIKRE 165
           +K++W+ EW +  +NKL  I+P + EWK      R  E  LAR R+GH++LTH YL++RE
Sbjct: 181 VKSLWQNEWDEETDNKLHSIQPVISEWKQGPQIDRRGEIVLARARIGHSHLTHGYLLRRE 240

Query: 166 EPPLC-SCGQRLTIQHIIIEC 185
             P C  C   L+++HI+I+C
Sbjct: 241 VAPFCIPCQSLLSVKHILIDC 261

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|427798887|gb|JAA64895.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 2/96 (2%)

Query: 102  LPKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYL 161
            L ++++  W+  W Q  +NKL  IKP+LG W    ++ R  E  L R+R GHT+ TH YL
Sbjct: 1104 LKRKLRAYWQSTWDQQTHNKLHVIKPQLGHWP-PISKSRYTEVTLTRLRTGHTHSTHAYL 1162

Query: 162  IKREEPPLCS-CGQRLTIQHIIIECPTLVALRNSIF 196
            +   + P C  CG+ LT+ HI+I+C  L A+R   F
Sbjct: 1163 LSGGDAPFCDKCGEPLTVIHILIQCRGLDAIRKKHF 1198

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427798885|gb|JAA64894.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 2/96 (2%)

Query: 102  LPKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYL 161
            L ++++  W+  W Q  +NKL  IKP+LG W    ++ R  E  L R+R GHT+ TH YL
Sbjct: 1104 LKRKLRAYWQSTWDQQTHNKLHVIKPQLGHWP-PISKSRYTEVTLTRLRTGHTHSTHAYL 1162

Query: 162  IKREEPPLCS-CGQRLTIQHIIIECPTLVALRNSIF 196
            +   + P C  CG+ LT+ HI+I+C  L A+R   F
Sbjct: 1163 LSGGDAPFCDKCGEPLTVIHILIQCRGLDAIRKKHF 1198

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443721618|gb|ELU10867.1| hypothetical protein CAPTEDRAFT_200496, partial [Capitella teleta]

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 58/101 (57%), Gaps = 1/101 (0%)

Query: 104 KQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYLIK 163
           K I++ W+ EW +  +NKL  I P +G W      KR  E  LARIR+GHT+ TH Y+ +
Sbjct: 165 KYIRSRWQHEWDEQHSNKLHSIHPTIGPWPPCQREKRREEIVLARIRIGHTHYTHDYIPR 224

Query: 164 REEPPLC-SCGQRLTIQHIIIECPTLVALRNSIFGSSRQIT 203
            ++   C +C   LT+QHIIIEC   + +R    G  R +T
Sbjct: 225 GDDQTECVACVCPLTVQHIIIECADFLHIRYRDKGPFRALT 265

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|427798889|gb|JAA64896.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 2/96 (2%)

Query: 102  LPKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIRLGHTNLTHVYL 161
            L ++I+  W+  W +  +NKL  IKP+LG W    ++ R  E  L R+R GHT+ TH YL
Sbjct: 1104 LKRKIRAYWQSTWDRQTHNKLHVIKPQLGHWP-PISKSRYTEVTLTRLRTGHTHSTHAYL 1162

Query: 162  IKREEPPLCS-CGQRLTIQHIIIECPTLVALRNSIF 196
            +   + P C  CG+ LT+ HI+I+C  L A+R   F
Sbjct: 1163 LSGGDAPFCDKCGEPLTVIHILIQCRGLDAIRKKHF 1198

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
ASPGD|ASPL0000075333	486	AN10625 [Emericella nidulans (	0.441	0.209	0.276	1.1e-05

ASPGD|ASPL0000075333 AN10625 [Emericella nidulans (taxid:162425)]

 Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 31/112 (27%), Positives = 57/112 (50%)

Query:    95 VRTCLKTLPKQIKNI-WKREWQQ-NVNNKLFQIKPELGE--WKSSYNRKRTLETALARIR 150
             +R+ +K    ++ N  W+ +W+  +   +L+++ P       +   +  R L T + ++R
Sbjct:   325 IRSAVKRRAHEVVNARWENDWKSCHHGRELYELTPTPTRKVLRVHQDLHRALSTIIVQMR 384

Query:   151 LGHTNLTHVYLIKREEPPL----CSCGQRL-TIQHIIIECPTLVALRNSIFG 197
              G   L H YL +R  P +    C CG+   +++HI++ CPT   LR  IFG
Sbjct:   385 TGKIGLRH-YLYQRGVPDVPNSDCQCGRATQSVRHILLACPTFSGLREEIFG 435


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      231       231   0.00084  113 3  11 22  0.39    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  202 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.76u 0.18s 20.94t   Elapsed:  00:00:01
  Total cpu time:  20.76u 0.18s 20.94t   Elapsed:  00:00:03
  Start:  Thu Aug 15 13:30:23 2013   End:  Thu Aug 15 13:30:26 2013

GO:0008150 "biological_process" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004523 "ribonuclease H activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
PRK08719	147	ribonuclease H; Reviewed	98.6
PF00075	132	RNase_H: RNase H; InterPro: IPR002156 The RNase H	98.58
cd06222	130	RnaseH RNase H (RNase HI) is an endonuclease that	98.45
PRK06548	161	ribonuclease H; Provisional	98.42
PRK00203	150	rnhA ribonuclease H; Reviewed	98.39
COG0328	154	RnhA Ribonuclease HI [DNA replication, recombinati	97.96
KOG3752|consensus	371		97.37
PF13966	86	zf-RVT: zinc-binding in reverse transcriptase	95.88
PF13456	87	RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH	91.84
PRK13907	128	rnhA ribonuclease H; Provisional	85.5

>PRK08719 ribonuclease H; Reviewed

Probab=98.60  E-value=4.5e-08  Score=79.34  Aligned_cols=28  Identities=18%  Similarity=0.230  Sum_probs=25.3

Q ss_pred             CCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         41 KSQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        41 ~~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      +...|+|.|||||+|++|||.||++|++
T Consensus       116 ~~~~i~~~~VkgH~g~~~Ne~aD~lA~~  143 (147)
T PRK08719        116 ARKYVEVEKVTAHSGIEGNEAADMLAQA  143 (147)
T ss_pred             CCCcEEEEEecCCCCChhHHHHHHHHHH
Confidence            3567999999999999999999999885

>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site

Probab=98.58  E-value=3e-08  Score=77.22  Aligned_cols=47  Identities=15%  Similarity=0.158  Sum_probs=35.1

Q ss_pred             ccccccCCchhhHHHHHh------------------------hCCCeEEEEEeccCCCC-CcchhHHHHhhh
Q psy13365         22 KTLKNHCDSCCDVKILQN------------------------EKSQAVHLVSGMVHSAL-EGKKTFYQVQRH   68 (231)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~------------------------~~~~~V~l~WIPgH~GI-~GNE~AD~aak~   68 (231)
                      ..+.+.+||...+..+..                        ..+..|+|+|||||+|+ .|||.||+|||+
T Consensus        58 ~~v~I~tDS~~v~~~l~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~  129 (132)
T PF00075_consen   58 RKVTIYTDSQYVLNALNKWLHGNGWKKTSNGRPIKNEIWELLSRGIKVRFRWVPGHSGVPQGNERADRLAKE  129 (132)
T ss_dssp             SEEEEEES-HHHHHHHHTHHHHTTSBSCTSSSBHTHHHHHHHHHSSEEEEEESSSSSSSHHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHhccccccccccccccchhheeeccccceEEeeeeccCcCCCchhHHHHHHHHHH
Confidence            556666777766664443                        12347999999999999 699999999984

This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....

>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner

Probab=98.45  E-value=1.5e-07  Score=70.58  Aligned_cols=61  Identities=16%  Similarity=0.103  Sum_probs=50.6

Q ss_pred             cchhhhhhhcCCCCccccccCCchhhHHHHHhh--------------------CCCeEEEEEeccCCCCCcchhHHHHhh
Q psy13365          8 GLCKSYDILRGNPWKTLKNHCDSCCDVKILQNE--------------------KSQAVHLVSGMVHSALEGKKTFYQVQR   67 (231)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~V~l~WIPgH~GI~GNE~AD~aak   67 (231)
                      ++....+.+...+...+.+.+||...++.++..                    ....++|.|||+|+|+++|+.||.+|+
T Consensus        48 al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~  127 (130)
T cd06222          48 ALIEALELALELGGKKVNIYTDSQYVINALTGWYEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAK  127 (130)
T ss_pred             HHHHHHHHHHhCCCceEEEEECHHHHHHHhhccccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHH
Confidence            344455556567788999999999999999864                    567899999999999999999999888


Q ss_pred             h
Q psy13365         68 H   68 (231)
Q Consensus        68 ~   68 (231)
                      +
T Consensus       128 ~  128 (130)
T cd06222         128 E  128 (130)
T ss_pred             h
Confidence            4

One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.

>PRK06548 ribonuclease H; Provisional

Probab=98.42  E-value=1.5e-07  Score=77.47  Aligned_cols=47  Identities=11%  Similarity=0.065  Sum_probs=38.4

Q ss_pred             cccccCCchhhHHHHHh------------hCC------------------CeEEEEEeccCCCCCcchhHHHHhhhc
Q psy13365         23 TLKNHCDSCCDVKILQN------------EKS------------------QAVHLVSGMVHSALEGKKTFYQVQRHN   69 (231)
Q Consensus        23 ~~~~~~~~~~~~~~~~~------------~~~------------------~~V~l~WIPgH~GI~GNE~AD~aak~~   69 (231)
                      ++.+.+||.-+|+.++.            ++|                  ..|+|.|||||+|++|||.||+||+++
T Consensus        63 ~v~I~TDS~yvi~~i~~W~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~~~v~~~wVkgHsg~~gNe~aD~LA~~a  139 (161)
T PRK06548         63 PILILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMENRNIRMSWVNAHTGHPLNEAADSLARQA  139 (161)
T ss_pred             eEEEEeChHHHHHHHHHHHHHHHHCCCcccCCCccccHHHHHHHHHHHhcCceEEEEEecCCCCHHHHHHHHHHHHH
Confidence            46788888888888872            222                  369999999999999999999988864

>PRK00203 rnhA ribonuclease H; Reviewed

Probab=98.39  E-value=1.8e-07  Score=75.65  Aligned_cols=27  Identities=7%  Similarity=0.006  Sum_probs=24.7

Q ss_pred             CCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         42 SQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        42 ~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      ...|.|.|||||+|++|||.||++|++
T Consensus       112 ~~~v~~~wV~~H~~~~~N~~AD~lA~~  138 (150)
T PRK00203        112 RHQIKWHWVKGHAGHPENERCDELARA  138 (150)
T ss_pred             cCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            357999999999999999999999885

>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]

Probab=97.96  E-value=8.6e-06  Score=66.50  Aligned_cols=25  Identities=16%  Similarity=-0.015  Sum_probs=23.8

Q ss_pred             eEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         44 AVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        44 ~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      .|.+.|||||.|.+|||.||++|++
T Consensus       117 ~v~~~WVkgH~g~~~NeraD~LA~~  141 (154)
T COG0328         117 LVFWEWVKGHAGHPENERADQLARE  141 (154)
T ss_pred             eEEEEEeeCCCCChHHHHHHHHHHH
Confidence            8999999999999999999999885

>KOG3752|consensus

Probab=97.37  E-value=0.00014  Score=66.66  Aligned_cols=28  Identities=18%  Similarity=0.115  Sum_probs=26.2

Q ss_pred             CCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         41 KSQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        41 ~~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      ++..|.+.|||||.||.|||+||.+|++
T Consensus       334 ~~~~vq~~~V~Gh~gi~gne~Ad~lARk  361 (371)
T KOG3752|consen  334 SNKKVQQEYVGGHSGILGNEMADALARK  361 (371)
T ss_pred             ccCceEEEEecCcCCcchHHHHHHHHhh
Confidence            6789999999999999999999999984

>PF13966 zf-RVT: zinc-binding in reverse transcriptase

Probab=95.88  E-value=0.0044  Score=45.27  Aligned_cols=27  Identities=33%  Similarity=0.801  Sum_probs=22.8

Q ss_pred             CCCCCCCc-ccCC-CCccccccccCcchH
Q psy13365        163 KREEPPLC-SCGQ-RLTIQHIIIECPTLV  189 (231)
Q Consensus       163 ~~~~~p~C-~CG~-~~Tv~HiL~~Cp~~~  189 (231)
                      +...++.| .||. .||+.|+|++||...
T Consensus        55 ~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~   83 (86)
T PF13966_consen   55 GIQVDPICPLCGNEEETIEHLFFHCPFAR   83 (86)
T ss_pred             CCccCCccccCCCccccccceeccCcCcc
Confidence            44667999 9995 899999999999764

>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B

Probab=91.84  E-value=0.18  Score=35.59  Aligned_cols=57  Identities=12%  Similarity=0.019  Sum_probs=40.2

Q ss_pred             cchhhhhhhcCCCCccccccCCchhhHHHHHhhC-------------------CCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365          8 GLCKSYDILRGNPWKTLKNHCDSCCDVKILQNEK-------------------SQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      +|-.........-+..+-..+||...|..|+...                   -..+.+.|||    =++|..||.+||.
T Consensus         8 al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~----r~~N~~A~~LA~~   83 (87)
T PF13456_consen    8 ALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIP----REQNKVADALAKF   83 (87)
T ss_dssp             HHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE------GGGSHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEC----hHHhHHHHHHHHH
Confidence            4455555666677788888888888888887442                   2379999999    8999999999984

>PRK13907 rnhA ribonuclease H; Provisional

Probab=85.50  E-value=0.8  Score=35.36  Aligned_cols=43  Identities=12%  Similarity=0.008  Sum_probs=30.2

Q ss_pred             ccccccCCchhhHHHHHhh-------------------CCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         22 KTLKNHCDSCCDVKILQNE-------------------KSQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~-------------------~~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      ..+....||..-++.++.+                   +-..+.|.|||.    ++|+.||.+|+.
T Consensus        62 ~~v~i~sDS~~vi~~~~~~~~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r----~~N~~Ad~LA~~  123 (128)
T PRK13907         62 NIVSFRTDSQLVERAVEKEYAKNKMFAPLLEEALQYIKSFDLFFIKWIPS----SQNKVADELARK  123 (128)
T ss_pred             CEEEEEechHHHHHHHhHHHhcChhHHHHHHHHHHHHhcCCceEEEEcCc----hhchhHHHHHHH
Confidence            4566667777666666532                   122567899998    599999999884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 4e-07
 Identities = 37/223 (16%), Positives = 75/223 (33%), Gaps = 53/223 (23%)

Query: 13  YDILRGNPWKTLKNHCDSCCDVKILQNEKSQAVHLVSGMVHSALEGKKTF-YQVQRHNDN 71
           Y++ R  P+  L+        +  L+  K+  +    G++ S   GK      V   +  
Sbjct: 129 YNVSRLQPYLKLRQA------LLELRPAKNVLID---GVLGS---GKTWVALDVCL-SYK 175

Query: 72  VKLCPQGLGGAIF-PNLGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFQIKPELG 130
           V+     +   IF  NL +          +T+ + ++ +             +QI P   
Sbjct: 176 VQCK---MDFKIFWLNLKNCNSP------ETVLEMLQKLL------------YQIDPNWT 214

Query: 131 EW-KSSYNRKRTLETALARIR--LGHTNLTHVYLIKREEPPLCSCGQRLTIQHIIIECPT 187
                S N K  + +  A +R  L      +  L+      + +           + C  
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN---VQN---AKAWNAFNLSCKI 268

Query: 188 LVALRN-SIF-----GSSRQITLSEVLKD-SPADTKKVL-KFL 222
           L+  R   +       ++  I+L       +P + K +L K+L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
2qkb_A	154	Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy	98.74
3qio_A	150	GAG-POL polyprotein; RNAse H, inhibitor, nuclease,	98.71
3h08_A	146	RNH (ribonuclease H); RNAse H, 3D-structure, endon	98.68
2e4l_A	158	Ribonuclease HI, RNAse HI; hydrolase, endoribonucl	98.61
2kq2_A	147	Ribonuclease H-related protein; PSI, NESG, protein	98.52
1ril_A	166	Ribonuclease H; hydrolase(endoribonuclease); 2.80A	98.49
1jl1_A	155	Ribonuclease HI; RNAse HI, protein stability, ther	98.45
3p1g_A	165	Xenotropic murine leukemia virus-related virus (X	98.34
1mu2_A	555	HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym	98.2
2zd1_A	557	Reverse transcriptase/ribonuclease H; P51/P66, het	98.16
2lsn_A	165	Reverse transcriptase; RNAse H, viral protein; NMR	98.07
3hst_B	141	Protein RV2228C/MT2287; ribonuclease H1, RV2228C N	97.28
3u3g_D	140	Ribonuclease H, RNAse H1; hydrolase, cleave the RN	97.21
2ehg_A	149	Ribonuclease HI; RNAse HI, hyperthermophilic archa	96.85

>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*

Probab=98.74  E-value=3e-09  Score=84.98  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=24.8

Q ss_pred             CCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         42 SQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        42 ~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      +..|+|.|||||+|++|||.||+||++
T Consensus       121 ~~~v~~~~V~~H~g~~~N~~AD~LA~~  147 (154)
T 2qkb_A          121 GMDIQWMHVPGHSGFIGNEEADRLARE  147 (154)
T ss_dssp             TCEEEEEECCTTSSCHHHHHHHHHHHH
T ss_pred             CCceEEEEccCCCCCHhHHHHHHHHHH
Confidence            457999999999999999999999985

>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A

Probab=98.71  E-value=6.2e-09  Score=83.26  Aligned_cols=28  Identities=18%  Similarity=0.196  Sum_probs=25.7

Q ss_pred             CCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         41 KSQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        41 ~~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      +...|+|.|||||+|++|||.||+||++
T Consensus       116 ~~~~v~~~wV~gH~g~~~Ne~AD~LA~~  143 (150)
T 3qio_A          116 KKEKVYLAWVPAHKGIGGNEQVDKLVSA  143 (150)
T ss_dssp             TCSEEEEEECCTTSCCHHHHHHHHHHHT
T ss_pred             hcCceEEEEccCcCCChhHHHHHHHHHH
Confidence            4568999999999999999999999985

>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}

Probab=98.68  E-value=5.3e-09  Score=82.63  Aligned_cols=47  Identities=15%  Similarity=0.032  Sum_probs=37.3

Q ss_pred             ccccccCCchhhHHHHHh-------------h------------------CCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         22 KTLKNHCDSCCDVKILQN-------------E------------------KSQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~-------------~------------------~~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      ..+.+.+||...|+.|..             +                  +...|+|.|||||+|++|||.||+||++
T Consensus        63 ~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~~v~~~~V~gH~g~~~N~~AD~LA~~  140 (146)
T 3h08_A           63 ARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHRVTFHKVKGHSDNPYNSRADELARL  140 (146)
T ss_dssp             CEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHSEEEEEECCC-CCSHHHHHHHHHHHH
T ss_pred             CcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhCceEEEEcCCcCCcHhHHHHHHHHHH
Confidence            677888888888877765             1                  1236999999999999999999999885

>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A

Probab=98.61  E-value=1.4e-08  Score=81.65  Aligned_cols=27  Identities=11%  Similarity=0.021  Sum_probs=24.8

Q ss_pred             CeEEEEEeccCCCCCcchhHHHHhhhc
Q psy13365         43 QAVHLVSGMVHSALEGKKTFYQVQRHN   69 (231)
Q Consensus        43 ~~V~l~WIPgH~GI~GNE~AD~aak~~   69 (231)
                      ..|+|.|||||+|++|||.||+||+++
T Consensus       116 ~~v~~~wV~gH~g~~~Ne~AD~LAk~a  142 (158)
T 2e4l_A          116 HQIDWRWVKGHAGHAENERCDQLARAA  142 (158)
T ss_dssp             SEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CcEEEEEccCCCCchhHHHHHHHHHHH
Confidence            479999999999999999999998863

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A

Probab=98.52  E-value=7.9e-09  Score=82.17  Aligned_cols=46  Identities=9%  Similarity=-0.101  Sum_probs=34.8

Q ss_pred             cccccCCchhhHHHHH------------------hhCCCeEEEEEeccCCCCCcchhHHHHhhhc
Q psy13365         23 TLKNHCDSCCDVKILQ------------------NEKSQAVHLVSGMVHSALEGKKTFYQVQRHN   69 (231)
Q Consensus        23 ~~~~~~~~~~~~~~~~------------------~~~~~~V~l~WIPgH~GI~GNE~AD~aak~~   69 (231)
                      .+.+.+||.+.++-+.                  .-.. .|+|.|||||+|++|||.||+||+++
T Consensus        71 ~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~-~v~~~wV~gH~g~~~Ne~AD~LA~~a  134 (147)
T 2kq2_A           71 KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG-IYSFEKVKAHSGNEFNDYVDMKAKSA  134 (147)
T ss_dssp             CCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST-TCCBCCCCCCCCCHHHHHHHHHHHHH
T ss_pred             eEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcC-CeeEEEecCcCCCcchHHHHHHHHHH
Confidence            6777888865554332                  1111 79999999999999999999999863

>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A

Probab=98.49  E-value=2.9e-08  Score=80.44  Aligned_cols=27  Identities=11%  Similarity=0.041  Sum_probs=24.8

Q ss_pred             CeEEEEEeccCCCCCcchhHHHHhhhc
Q psy13365         43 QAVHLVSGMVHSALEGKKTFYQVQRHN   69 (231)
Q Consensus        43 ~~V~l~WIPgH~GI~GNE~AD~aak~~   69 (231)
                      ..|+|.|||||+|++|||.||+||+++
T Consensus       119 ~~v~~~wV~gH~g~~~Ne~AD~LAk~a  145 (166)
T 1ril_A          119 HRVRFHFVKGHTGHPENERVDREARRQ  145 (166)
T ss_dssp             SEEECCCCCGGGSCTHHHHHHHHHHHH
T ss_pred             CeEEEEEeeCCCCchhHHHHHHHHHHH
Confidence            479999999999999999999998864

>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...

Probab=98.45  E-value=6.6e-08  Score=77.35  Aligned_cols=27  Identities=7%  Similarity=-0.012  Sum_probs=24.7

Q ss_pred             CeEEEEEeccCCCCCcchhHHHHhhhc
Q psy13365         43 QAVHLVSGMVHSALEGKKTFYQVQRHN   69 (231)
Q Consensus        43 ~~V~l~WIPgH~GI~GNE~AD~aak~~   69 (231)
                      ..|+|.|||||+|++|||.||+||+++
T Consensus       114 ~~v~~~wV~gH~g~~~Ne~AD~LA~~a  140 (155)
T 1jl1_A          114 HQIKWEWVKGHAGHPENERADELARAA  140 (155)
T ss_dssp             CEEEEEECCSSTTCHHHHHHHHHHHHH
T ss_pred             CceEEEEcCCCCCCHHHHHHHHHHHHH
Confidence            479999999999999999999998853

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A

Probab=98.34  E-value=1.4e-07  Score=76.63  Aligned_cols=47  Identities=17%  Similarity=0.112  Sum_probs=36.2

Q ss_pred             ccccccCCchhhHHHH-------------------H-hhCCCeEEEEEeccCCC-----CCcchhHHHHhhh
Q psy13365         22 KTLKNHCDSCCDVKIL-------------------Q-NEKSQAVHLVSGMVHSA-----LEGKKTFYQVQRH   68 (231)
Q Consensus        22 ~~~~~~~~~~~~~~~~-------------------~-~~~~~~V~l~WIPgH~G-----I~GNE~AD~aak~   68 (231)
                      ..+.+.+||...++.|                   . ..++..|+|.|||||+|     ++|||.||++|++
T Consensus        81 ~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~  152 (165)
T 3p1g_A           81 KKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAARE  152 (165)
T ss_dssp             SEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHH
Confidence            5666777776555443                   1 12567899999999999     9999999999885

>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B

Probab=98.20  E-value=6.4e-07  Score=85.10  Aligned_cols=47  Identities=15%  Similarity=0.151  Sum_probs=36.5

Q ss_pred             ccccccCCchhhHHHHHh-----------------hCCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         22 KTLKNHCDSCCDVKILQN-----------------EKSQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~-----------------~~~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      ..+.+..||...++.++.                 .++..|++.|||||+|++|||.||+||++
T Consensus       490 ~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~  553 (555)
T 1mu2_A          490 PKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQ  553 (555)
T ss_dssp             SEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHT
T ss_pred             CeEEEEEehHHHHHHHhcccccccHHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHh
Confidence            456666777766665542                 23467999999999999999999999984

>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...

Probab=98.16  E-value=6.3e-07  Score=85.21  Aligned_cols=47  Identities=19%  Similarity=0.160  Sum_probs=34.8

Q ss_pred             ccccccCCchhhHHHHHh-----------------hCCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         22 KTLKNHCDSCCDVKILQN-----------------EKSQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~-----------------~~~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      ..+.+.+||...++.++.                 .+...|++.|||||+|++|||.||+||++
T Consensus       493 ~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~  556 (557)
T 2zd1_A          493 LEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA  556 (557)
T ss_dssp             SEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC--
T ss_pred             CcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhc
Confidence            456667777766666542                 12347999999999999999999999984

>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}

Probab=98.07  E-value=8.4e-07  Score=72.04  Aligned_cols=26  Identities=12%  Similarity=0.148  Sum_probs=23.2

Q ss_pred             CeEEEEEeccCCCC------CcchhHHHHhhh
Q psy13365         43 QAVHLVSGMVHSAL------EGKKTFYQVQRH   68 (231)
Q Consensus        43 ~~V~l~WIPgH~GI------~GNE~AD~aak~   68 (231)
                      ..|+|.|||||+|+      +|||.||+||++
T Consensus       128 ~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~  159 (165)
T 2lsn_A          128 PDITIQHEKGHQPTNTSIHTEGNALADKLATQ  159 (165)
T ss_dssp             TTCEEEECCSSSCSSSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCccCCCCChHHHHHHHHHHH
Confidence            47999999999995      589999999985

>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}

Probab=97.28  E-value=8.9e-05  Score=57.07  Aligned_cols=46  Identities=7%  Similarity=-0.148  Sum_probs=35.3

Q ss_pred             CCCccccccCCchhhHHHHHhh--------------------CCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         19 NPWKTLKNHCDSCCDVKILQNE--------------------KSQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      ..++.+.+.+||...|+.++..                    +...|+|.|||+    +|||.||+||++
T Consensus        64 ~~~~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~  129 (141)
T 3hst_B           64 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLAND  129 (141)
T ss_dssp             HTCSEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHH
T ss_pred             CCCceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHH
Confidence            3456777888887777766531                    336899999995    999999999885

>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}

Probab=97.21  E-value=9.2e-05  Score=56.65  Aligned_cols=51  Identities=18%  Similarity=0.032  Sum_probs=36.6

Q ss_pred             hhhcCCCCc----cccccCCchhhHHHHHh---------------------hCCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         14 DILRGNPWK----TLKNHCDSCCDVKILQN---------------------EKSQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        14 ~~~~~~~~~----~~~~~~~~~~~~~~~~~---------------------~~~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      ..+...+.+    .+.+.+||...|+.++.                     ++-..|+|.|||+    +|||.||+||++
T Consensus        58 ~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~  133 (140)
T 3u3g_D           58 EDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNE  133 (140)
T ss_dssp             HHHGGGGGGGTTCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHH
T ss_pred             HHHHHcCCCCCCceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHH
Confidence            333344555    77788888777776653                     1114799999994    999999999885

>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A

Probab=96.85  E-value=0.00037  Score=54.50  Aligned_cols=44  Identities=20%  Similarity=0.073  Sum_probs=34.3

Q ss_pred             CccccccCCchhhHHHHHhh-C--C----------------CeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         21 WKTLKNHCDSCCDVKILQNE-K--S----------------QAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~-~--~----------------~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      ...+.+.+||...|+.++.. +  +                ..|+|.|||+    +|||.||+||++
T Consensus        68 ~~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~~v~~~~V~~----~~N~~AD~LA~~  130 (149)
T 2ehg_A           68 ISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPR----EENKEADRLSRV  130 (149)
T ss_dssp             CCSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHHTCEEEECCG----GGCHHHHHHHHH
T ss_pred             CCEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcCCEEEEEcCC----cccHHHHHHHHH
Confidence            35778888888888877653 1  0                1499999999    599999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d1mu2a1	126	HIV RNase H (Domain of reverse transcriptase) {Hum	98.98
d1jl1a_	152	RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	98.83
d1rila_	147	RNase H (RNase HI) {Thermus thermophilus [TaxId: 2	98.77
d1s1ta1	110	HIV RNase H (Domain of reverse transcriptase) {Hum	94.85

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=98.98  E-value=1.2e-10  Score=88.40  Aligned_cols=46  Identities=15%  Similarity=0.190  Sum_probs=36.3

Q ss_pred             cccccCCchhhHHHHHhh-----------------CCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         23 TLKNHCDSCCDVKILQNE-----------------KSQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~-----------------~~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      .+.+.+||..+++.+...                 +...|.|.|||||+|++|||.||+||++
T Consensus        62 ~i~I~tDS~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~wV~gH~g~~gNe~AD~LA~~  124 (126)
T d1mu2a1          62 KVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQ  124 (126)
T ss_dssp             EEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHT
T ss_pred             ceEEEechHHHHHHHhcCCccccchHHHHHHHHhhhcceeEEEEEeCCCCCcchHHHHHHHHh
Confidence            456667777766666632                 3358999999999999999999999984

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=5.4e-10  Score=86.37  Aligned_cols=28  Identities=7%  Similarity=-0.019  Sum_probs=25.6

Q ss_pred             CCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         41 KSQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        41 ~~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      +...|+|+|||||+|++|||.||+||++
T Consensus       110 ~~~~V~~~wV~gH~g~~gNe~AD~LAk~  137 (152)
T d1jl1a_         110 GQHQIKWEWVKGHAGHPENERADELARA  137 (152)
T ss_dssp             TTCEEEEEECCSSTTCHHHHHHHHHHHH
T ss_pred             hcceeEEEEecccCCCccHHHHHHHHHH
Confidence            5568999999999999999999998885

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Thermus thermophilus [TaxId: 274]

Probab=98.77  E-value=6.4e-10  Score=86.06  Aligned_cols=30  Identities=10%  Similarity=0.004  Sum_probs=26.5

Q ss_pred             hhCCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365         39 NEKSQAVHLVSGMVHSALEGKKTFYQVQRH   68 (231)
Q Consensus        39 ~~~~~~V~l~WIPgH~GI~GNE~AD~aak~   68 (231)
                      ..+...|+|.|||||+|++|||.||+||++
T Consensus       110 ~~~~~~v~~~wVkgHsg~~gNe~AD~LAk~  139 (147)
T d1rila_         110 AMAPHRVRFHFVKGHTGHPENERVDREARR  139 (147)
T ss_dssp             HHTTSEEECCCCCGGGSCTHHHHHHHHHHH
T ss_pred             HhhhcccceEEccCCCCCcchHHHHHHHHH
Confidence            345568999999999999999999999885

>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=94.85  E-value=0.0063  Score=43.85  Aligned_cols=32  Identities=25%  Similarity=0.183  Sum_probs=25.8

Q ss_pred             ccccccCCchhhHHHHHhh-----------------CCCeEEEEEeccC
Q psy13365         22 KTLKNHCDSCCDVKILQNE-----------------KSQAVHLVSGMVH   53 (231)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~-----------------~~~~V~l~WIPgH   53 (231)
                      .++.+.+||...|+.++..                 +...|.+.|||||
T Consensus        62 ~~v~I~TDS~yvi~~i~~~~~~~~~~l~~~il~~l~~~~~v~i~WVpgH  110 (110)
T d1s1ta1          62 LEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAH  110 (110)
T ss_dssp             SEEEEEECCHHHHHHHHHCCSEESCHHHHHHHHHHHHCSEEEEEECCSS
T ss_pred             CeEEEEEehHHHHHHHhcCccccchHHHHHHHHHHhcCCceEEEEeCCC
Confidence            5688999999999888732                 2348999999999