Psyllid ID: psy13368

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MFLGFQNQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTLSFLSK
Secondary Structure (PSIPRED)
ccccccccccccccEEcccccccccccEEccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEccHHHHccccccEcccccccEEEEEcccHcccccHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccEEcccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mflgfqnqmsrakftlvdplvgggrgvkfsdvagLREAKVEVMEFVDylkrpeyyqnlgakytpseqklynkeeLFDRMCMALGGRAAEAIVFNRitsgaqndLKKVTEMANMQIRQFgmneniglvsfpkddnrqsirPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTLSFLSK
Flexible Loop (DISEMBL)
mflgfqnqmsrakftlvdplvgggrgvkfsdvaglreaKVEVMEFVDYLKRPEYyqnlgakytpseqKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGlvsfpkddnrqsIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTLSFLSK
Low Complexity Region (SEG)
MFLGFQNQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTLSFLSK
Disordered region (IsUnstruct)
***********AKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSF***************LAALMDEEASKLIAQCYMHTEKVLRDN***********
Disordered Region (DISOPRED)
**************T*****VGG*RGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSF***********YSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTLSFLSK
Disordered Region (DISEMBL)
MFLGFQNQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTLSFLSK
Disordered Region (DISPRO)
MFLGFQNQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTLSFLSK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLGFQNQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTLSFLSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q3ULF4	781	Paraplegin OS=Mus musculu	yes	N/A	0.615	0.143	0.582	7e-32
Q7TT47	744	Paraplegin OS=Rattus norv	yes	N/A	0.615	0.150	0.582	1e-31
Q9UQ90	795	Paraplegin OS=Homo sapien	yes	N/A	0.637	0.145	0.546	1e-31
Q8JZQ2	802	AFG3-like protein 2 OS=Mu	no	N/A	0.675	0.153	0.476	3e-26
Q9Y4W6	797	AFG3-like protein 2 OS=Ho	no	N/A	0.675	0.154	0.484	3e-26
Q2KJI7	805	AFG3-like protein 2 OS=Bo	no	N/A	0.675	0.152	0.476	8e-26
Q920A7	789	AFG3-like protein 1 OS=Mu	no	N/A	0.675	0.155	0.476	2e-25
Q0DHL4	822	ATP-dependent zinc metall	yes	N/A	0.637	0.141	0.418	2e-24
Q8VZI8	813	ATP-dependent zinc metall	yes	N/A	0.637	0.142	0.427	3e-24
Q84WU8	809	ATP-dependent zinc metall	no	N/A	0.637	0.143	0.427	8e-24

>sp|Q3ULF4|SPG7_MOUSE Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1

 Score =  136 bits (343), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 87/115 (75%), Gaps = 3/115 (2%)

Query: 64  PSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNEN 123
           P +Q L+ KE+LF+RMCMALGGRAAEAI F+R+TSGAQ+DL+KVT +A   ++QFGM  +
Sbjct: 611 PRDQYLFTKEQLFERMCMALGGRAAEAISFSRVTSGAQDDLRKVTRIAYSMVKQFGMAPS 670

Query: 124 IGLVSFPK-DDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
           IG VSFP+  +    I  RP+S+ L  +MD EA  L+A+ Y HTEKVL DN+DKL
Sbjct: 671 IGPVSFPEAQEGLMGIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEKVLLDNLDKL 725

Putative ATP-dependent protease.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|Q7TT47|SPG7_RAT Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 87/115 (75%), Gaps = 3/115 (2%)

Query: 64  PSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNEN 123
           P +Q L+ KE+LF+RMCMALGGRAAEAI F+R+TSGAQ+DL+KVT +A   ++QFGM  +
Sbjct: 574 PRDQYLFTKEQLFERMCMALGGRAAEAISFSRVTSGAQDDLRKVTRIAYSMVKQFGMAPS 633

Query: 124 IGLVSFPK-DDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
           IG VSFP+  +    I  RP+S+ L  +MD EA  L+A+ Y HTEKVL DN+DKL
Sbjct: 634 IGPVSFPEAQEGLVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLDKL 688

Putative ATP-dependent protease.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9UQ90|SPG7_HUMAN Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 88/119 (73%), Gaps = 3/119 (2%)

Query: 60  AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
           A+  P +Q L+ KE+LF+RMCMALGGRA+EA+ FN +TSGAQ+DL+KVT +A   ++QFG
Sbjct: 607 AQMLPRDQHLFTKEQLFERMCMALGGRASEALSFNEVTSGAQDDLRKVTRIAYSMVKQFG 666

Query: 120 MNENIGLVSFPK-DDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
           M   IG +SFP+  +    I  RP+S+ L  +MD EA  L+A+ Y HTEKVL+DN+DKL
Sbjct: 667 MAPGIGPISFPEAQEGLMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKL 725

Putative ATP-dependent zinc metalloprotease.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q8JZQ2|AFG32_MOUSE AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 84/128 (65%), Gaps = 5/128 (3%)

Query: 60  AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
           A+Y P EQ LY KE+L DRMCM LGGR +E I F RIT+GAQ+DL+KVT+ A  QI QFG
Sbjct: 605 AQYLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQIVQFG 664

Query: 120 MNENIGLVSF--PKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRD---NMDK 174
           MNE +G +SF  P+  +    +PYS+  A ++D+E   LI+  Y  T  +L +   +++K
Sbjct: 665 MNEKVGQISFDLPRQGDMVLEKPYSEATARMIDDEVRILISDAYRRTVALLTEKKADVEK 724

Query: 175 LTLSFLSK 182
           + L  L K
Sbjct: 725 VALLLLEK 732

ATP-dependent protease which is essential for axonal development.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9Y4W6|AFG32_HUMAN AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 5/128 (3%)

Query: 60  AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
           A+Y P EQ LY KE+L DRMCM LGGR +E I F RIT+GAQ+DL+KVT+ A  QI QFG
Sbjct: 606 AQYLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQIVQFG 665

Query: 120 MNENIGLVSF--PKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRD---NMDK 174
           MNE +G +SF  P+  +    +PYS+  A L+D+E   LI   Y  T  +L +   +++K
Sbjct: 666 MNEKVGQISFDLPRQGDMVLEKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEK 725

Query: 175 LTLSFLSK 182
           + L  L K
Sbjct: 726 VALLLLEK 733

ATP-dependent protease which is essential for axonal development.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q2KJI7|AFG32_BOVIN AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1

 Score =  116 bits (291), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 83/128 (64%), Gaps = 5/128 (3%)

Query: 60  AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
           A+Y P EQ LY +E+L DRMCM LGGR +E I F RIT+GAQ+DL+KVT+ A  QI QFG
Sbjct: 607 AQYLPREQYLYTREQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQIVQFG 666

Query: 120 MNENIGLVSF--PKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRD---NMDK 174
           MNE +G +SF  P+  +    +PYS+  A L+D+E   LI   Y  T  +L +   +++K
Sbjct: 667 MNEKVGQISFDLPRQGDMVLEKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEK 726

Query: 175 LTLSFLSK 182
           + L  L K
Sbjct: 727 VALLLLEK 734

Putative ATP-dependent protease.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q920A7|AFG31_MOUSE AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 83/128 (64%), Gaps = 5/128 (3%)

Query: 60  AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
           A+Y P EQ LY +E+LFDRMCM LGGR AE + F +IT+GAQ+DL+KVT+ A  QI QFG
Sbjct: 598 AQYLPREQFLYTREQLFDRMCMMLGGRVAEQLFFGQITTGAQDDLRKVTQSAYAQIVQFG 657

Query: 120 MNENIGLVS--FPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVL---RDNMDK 174
           M+E +G VS  FP+       +PYS+  A L+DEE   L+   Y  T ++L   R+ ++K
Sbjct: 658 MSEKLGQVSFDFPRQGETMVEKPYSEATAQLIDEEVRCLVRSAYNRTLELLTQCREQVEK 717

Query: 175 LTLSFLSK 182
           +    L K
Sbjct: 718 VGRRLLEK 725

Putative ATP-dependent protease.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q0DHL4|FTSH8_ORYSJ ATP-dependent zinc metalloprotease FTSH 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 82/117 (70%), Gaps = 1/117 (0%)

Query: 60  AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
           A+Y P+E  L  KE+LFD  CM LGGRAAE ++  RI++GAQNDL+KVT+M   Q+  +G
Sbjct: 633 AQYVPNENLLMTKEQLFDMTCMTLGGRAAEEVLIGRISTGAQNDLEKVTKMTYAQVAVYG 692

Query: 120 MNENIGLVSFP-KDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
            +E +GL+SFP +DD  +  +PYS + A+++D+E  + + + Y  T +++ ++ +++
Sbjct: 693 FSEKVGLLSFPQRDDGFEMTKPYSNQTASIIDDEVREWVGKAYKKTVELITEHKEQV 749

Probable ATP-dependent zinc metallopeptidase.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q8VZI8|FTSHA_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 81/117 (69%), Gaps = 1/117 (0%)

Query: 60  AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
           A+Y P+E  L  KE+LFD  CM LGGRAAE ++  RI++GAQNDL+KVT+M   Q+  +G
Sbjct: 625 AQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYG 684

Query: 120 MNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLT 176
            ++ IGL+SFP+ ++  S +PYS R  A++DEE  + + + Y  T +++ ++ +++ 
Sbjct: 685 FSDKIGLLSFPQREDEFS-KPYSNRTGAMIDEEVREWVGKAYKRTVELIEEHKEQVA 740

Probable ATP-dependent zinc metallopeptidase. Involved in the assembly and/or stability of the complexes I and V of the mitochondrial oxidative phosphorylation system.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q84WU8|FTSH3_ARATH ATP-dependent zinc metalloprotease FTSH 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1

 Score =  110 bits (274), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 79/117 (67%), Gaps = 1/117 (0%)

Query: 60  AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
           A+Y P+E  L  KE+LFD  CM LGGRAAE ++  +I++GAQNDL+KVT+M   Q+  +G
Sbjct: 619 AQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGKISTGAQNDLEKVTKMTYAQVAVYG 678

Query: 120 MNENIGLVSF-PKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
            ++ +GL+SF P+DD     +PYS +  A++DEE    +A+ Y  T +++ ++  K+
Sbjct: 679 FSDKVGLLSFPPRDDGYDFSKPYSNKTGAIIDEEVRDWVAKAYERTVELVEEHKVKV 735

Probable ATP-dependent zinc metallopeptidase. Involved in the assembly and/or stability of the complexes I and V of the mitochondrial oxidative phosphorylation system.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
260797851	663	hypothetical protein BRAFLDRAFT_234866 [	0.736	0.202	0.578	4e-38
124487840	220	putative paraplegin [Maconellicoccus hir	0.631	0.522	0.649	1e-36
291225142	719	PREDICTED: spastic paraplegia 7-like [Sa	0.714	0.180	0.536	6e-35
189235434	777	PREDICTED: similar to paraplegin [Tribol	0.648	0.151	0.588	6e-35
328713221	731	PREDICTED: paraplegin-like [Acyrthosipho	0.637	0.158	0.584	2e-34
312383446	604	hypothetical protein AND_03433 [Anophele	0.642	0.193	0.588	3e-34
390369511	712	PREDICTED: paraplegin-like, partial [Str	0.747	0.191	0.535	6e-34
157137618	766	paraplegin [Aedes aegypti] gi|108869668|	0.637	0.151	0.601	9e-34
390342024	818	PREDICTED: paraplegin-like [Strongylocen	0.763	0.169	0.530	1e-33
357629698	785	putative paraplegin [Danaus plexippus]	0.741	0.171	0.560	1e-33

>gi|260797851|ref|XP_002593914.1| hypothetical protein BRAFLDRAFT_234866 [Branchiostoma floridae] gi|229279146|gb|EEN49925.1| hypothetical protein BRAFLDRAFT_234866 [Branchiostoma floridae]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 81/140 (57%), Positives = 105/140 (75%), Gaps = 6/140 (4%)

Query: 42  VMEFVDYLKR----PEYYQNLG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRI 96
           ++E  D L +    P     LG A+Y P EQ LY++EELFD+MCMALGGRAAEAI+FNR+
Sbjct: 455 LLEHTDALLKVTIVPRTSAALGFAQYLPKEQYLYSQEELFDKMCMALGGRAAEAIIFNRV 514

Query: 97  TSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQ-SIRPYSKRLAALMDEEASK 155
           T+GA +DLKKVT+MA  QI+QFGMN N+G +SFP++DN     +P+SK LAALMDEEA +
Sbjct: 515 TTGASDDLKKVTKMAYAQIKQFGMNPNVGYLSFPEEDNNGLGKKPFSKHLAALMDEEARR 574

Query: 156 LIAQCYMHTEKVLRDNMDKL 175
           L+A+ Y   +K+L DN DKL
Sbjct: 575 LVARAYYQAQKILVDNKDKL 594

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|124487840|gb|ABN12003.1| putative paraplegin [Maconellicoccus hirsutus]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 94/117 (80%), Gaps = 2/117 (1%)

Query: 52  PEYYQNLG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEM 110
           P     LG A+YTP++QKL++KEELFDRMCMALGGR AEAI FNRIT+GAQNDL+KVT+M
Sbjct: 64  PRTSMALGFAQYTPTDQKLFSKEELFDRMCMALGGRVAEAITFNRITTGAQNDLEKVTKM 123

Query: 111 ANMQIRQFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKV 167
           AN Q+RQFGM+  +GLVSFP+++     RPYSK L ALM+ EA +LI + Y HTE+V
Sbjct: 124 ANAQVRQFGMSNVVGLVSFPEEEG-HGRRPYSKTLHALMEAEAKQLINRAYRHTEEV 179

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291225142|ref|XP_002732560.1| PREDICTED: spastic paraplegia 7-like [Saccoglossus kowalevskii]

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 103/136 (75%), Gaps = 6/136 (4%)

Query: 42  VMEFVDYLKR----PEYYQNLG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRI 96
           ++E  D L +    P   + LG A+Y PS+QKLY  E+LFDRMCMALGGRAAEA+ FN+I
Sbjct: 522 LLEHTDVLMKVSIIPRTNKALGFAQYLPSDQKLYTTEQLFDRMCMALGGRAAEAVTFNKI 581

Query: 97  TSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQ-SIRPYSKRLAALMDEEASK 155
           T+GAQ+DLK+VT+MA  QI+ +GM+E IG +SFP  D +    +P+S+ L+ L+DEEA +
Sbjct: 582 TTGAQDDLKRVTQMAYAQIQSYGMSEKIGQISFPDKDTKALGQKPFSQALSQLIDEEARQ 641

Query: 156 LIAQCYMHTEKVLRDN 171
           L+A+ Y+HT+K+LR+N
Sbjct: 642 LVAKAYLHTDKLLRNN 657

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|189235434|ref|XP_001813433.1| PREDICTED: similar to paraplegin [Tribolium castaneum] gi|270004289|gb|EFA00737.1| hypothetical protein TcasGA2_TC003619 [Tribolium castaneum]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 98/119 (82%), Gaps = 1/119 (0%)

Query: 60  AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
           A+Y P +QKLY KEELF+RMCM LGGR AE+++FNRIT+GAQNDL+KVT+MA  QI++FG
Sbjct: 596 AQYIPRDQKLYTKEELFERMCMTLGGRVAESLIFNRITTGAQNDLEKVTKMAYAQIKEFG 655

Query: 120 MNENIGLVSFPKDDNRQ-SIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTL 177
           M+E++GL+SFP+++ ++   RPYSK+LA L+D EA +L+++ Y  TE+VL  N +KL L
Sbjct: 656 MSESVGLLSFPQEETQEKGRRPYSKKLANLIDIEARRLVSRAYKRTEEVLLKNKEKLEL 714

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713221|ref|XP_001943590.2| PREDICTED: paraplegin-like [Acyrthosiphon pisum]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/118 (58%), Positives = 95/118 (80%), Gaps = 2/118 (1%)

Query: 60  AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
           A+YTP+E+ L +K+ LF++MC+ LGGR AE+IVFN IT+GAQNDL KVT++AN Q+RQ+G
Sbjct: 566 AQYTPTERYLLSKQALFEKMCLGLGGRVAESIVFNSITTGAQNDLDKVTKIANAQVRQYG 625

Query: 120 MNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTL 177
           MN+ +GLVSF +D N  S+RPYS +LAALM+ E S+L++  Y  TEK+L++N  KL L
Sbjct: 626 MNDKVGLVSFSEDKN--SLRPYSNKLAALMETEVSRLVSDAYFKTEKLLKENYKKLEL 681

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383446|gb|EFR28534.1| hypothetical protein AND_03433 [Anopheles darlingi]

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 94/119 (78%), Gaps = 2/119 (1%)

Query: 60  AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
           A+YTP EQKLY++E LFD+MCMALGGRAAE + FNRI++GAQNDL+KVT++A  QI+ FG
Sbjct: 433 AQYTPKEQKLYSREHLFDKMCMALGGRAAENLTFNRISTGAQNDLEKVTKIAYAQIKNFG 492

Query: 120 MNENIGLVSFPKDD--NRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLT 176
           MNE +G ++F +D+  N  + +PYSK L  L+D EA +LIA+ Y   E++LRDN DKL+
Sbjct: 493 MNEAVGPIAFAEDNESNPYASKPYSKSLGNLIDFEARQLIAEAYERAEQILRDNADKLS 551

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390369511|ref|XP_787789.3| PREDICTED: paraplegin-like, partial [Strongylocentrotus purpuratus]

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 99/142 (69%), Gaps = 6/142 (4%)

Query: 42  VMEFVDYLKR----PEYYQNLG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRI 96
           ++E  D L +    P     LG A+Y PS+QKLY+KE+LFDRMCMALGGR AEAI+FNR+
Sbjct: 489 LLEHTDALLKVSIVPRASAALGFAQYLPSDQKLYSKEQLFDRMCMALGGRVAEAIIFNRV 548

Query: 97  TSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQ-SIRPYSKRLAALMDEEASK 155
           T+GAQ+DL +VT++A  QIR  GMN+ IG +SFP+  + +   RPYS RL   MDEEA K
Sbjct: 549 TTGAQDDLNRVTKLAYSQIRSLGMNDEIGHLSFPEGSSSELGKRPYSHRLQHTMDEEARK 608

Query: 156 LIAQCYMHTEKVLRDNMDKLTL 177
           L+A  Y  TE +L  ++D L L
Sbjct: 609 LVATAYRATESLLNQHVDTLKL 630

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|157137618|ref|XP_001664033.1| paraplegin [Aedes aegypti] gi|108869668|gb|EAT33893.1| AAEL013841-PA [Aedes aegypti]

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 71/118 (60%), Positives = 91/118 (77%), Gaps = 2/118 (1%)

Query: 60  AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
           A+YTP EQKLY KE+LFD+MCMALGGRAAE I FNRIT+GAQNDL+KVT+MA  QI+ FG
Sbjct: 595 AQYTPKEQKLYTKEQLFDKMCMALGGRAAENITFNRITTGAQNDLEKVTKMAYAQIKYFG 654

Query: 120 MNENIGLVSFPKDDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
           M++ IG +SF ++        +PYSK++A L D EA ++I + Y  TE++LRDN DKL
Sbjct: 655 MSKTIGPISFSEESESDPYAGKPYSKQMANLFDVEARRMITEAYEKTEQILRDNGDKL 712

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390342024|ref|XP_798395.3| PREDICTED: paraplegin-like [Strongylocentrotus purpuratus]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/147 (53%), Positives = 102/147 (69%), Gaps = 8/147 (5%)

Query: 42  VMEFVDYLKR----PEYYQNLG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRI 96
           ++E  D L +    P     LG A+Y PS+QKLY+KE+LFDRMCMALGGR AEAI+FN++
Sbjct: 608 LLEHTDALLKVSIVPRASAALGFAQYLPSDQKLYSKEQLFDRMCMALGGRVAEAIIFNKV 667

Query: 97  TSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQ-SIRPYSKRLAALMDEEASK 155
           T+GAQ+DL +VT++A  QIR  GMN+ IG +SFP+  + +   RPYS RL   MDEEA K
Sbjct: 668 TTGAQDDLNRVTKLAYSQIRSLGMNDEIGHLSFPEGSSSELGKRPYSHRLQHTMDEEARK 727

Query: 156 LIAQCYMHTEKVLRDNMDKLTLSFLSK 182
           L+A  Y  TE +L  ++D  TL  LSK
Sbjct: 728 LVATAYRATESLLNQHVD--TLKLLSK 752

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|357629698|gb|EHJ78316.1| putative paraplegin [Danaus plexippus]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 102/141 (72%), Gaps = 6/141 (4%)

Query: 42  VMEFVDYLKR----PEYYQNLG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRI 96
           ++E  D L +    P   + LG A+YT S+QKLY+KEELFDRMCMALGGRAAEAI FN +
Sbjct: 579 LLEHTDALLKVTIVPRTNKALGFAQYTTSDQKLYSKEELFDRMCMALGGRAAEAITFNSV 638

Query: 97  TSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKL 156
           TSGAQNDL+KVT++A  Q+R FGM+ ++GLVSFP D       P+SK L  L+D EA +L
Sbjct: 639 TSGAQNDLEKVTKIAYAQVRVFGMSPSVGLVSFP-DVKEHQRSPFSKALKNLIDMEARQL 697

Query: 157 IAQCYMHTEKVLRDNMDKLTL 177
           IA+ Y  TE++L+ N +KL L
Sbjct: 698 IAKAYYRTEELLKRNENKLKL 718

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
FB|FBgn0024992	819	CG2658 [Drosophila melanogaste	0.686	0.152	0.496	3.8e-46
ZFIN|ZDB-GENE-030131-5391	788	spg7 "spastic paraplegia 7" [D	0.659	0.152	0.552	2.4e-45
MGI|MGI:2385906	781	Spg7 "spastic paraplegia 7 hom	0.648	0.151	0.565	1.5e-43
UNIPROTKB|Q9UQ90	795	SPG7 "Paraplegin" [Homo sapien	0.648	0.148	0.549	1.6e-43
RGD|727940	744	Spg7 "spastic paraplegia 7 hom	0.648	0.158	0.565	2.5e-43
UNIPROTKB|Q7TT47	744	Spg7 "Paraplegin" [Rattus norv	0.648	0.158	0.565	2.5e-43
UNIPROTKB|E2R4F3	793	SPG7 "Uncharacterized protein"	0.648	0.148	0.540	4.3e-43
UNIPROTKB|A7E2Z6	779	SPG7 "SPG7 protein" [Bos tauru	0.648	0.151	0.549	5.1e-43
UNIPROTKB|F1NXP0	768	SPG7 "Uncharacterized protein"	0.664	0.157	0.536	1.6e-42
WB|WBGene00021425	747	ppgn-1 [Caenorhabditis elegans	0.642	0.156	0.487	4.6e-38

FB|FBgn0024992 CG2658 [Drosophila melanogaster (taxid:7227)]

 Score = 319 (117.4 bits), Expect = 3.8e-46, Sum P(2) = 3.8e-46
 Identities = 68/137 (49%), Positives = 95/137 (69%)

Query:    58 LG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIR 116
             LG A+YTPSEQ LY+KEELFD+MCMALGGRAAE +VFNRIT+GAQNDL+KVT++A  QI+
Sbjct:   638 LGFAQYTPSEQHLYSKEELFDKMCMALGGRAAENLVFNRITTGAQNDLEKVTKIAYSQIK 697

Query:   117 QFGMNENIGLVSFPKDDNRQS--------IRPYSKRLAALMDEEASKLIAQCYMHTEKVL 168
             +FGMN+ +G +     D  +          +P+S+ + +++D EA  ++A  Y  TE +L
Sbjct:   698 KFGMNDTLGPIYVRDADETEGGGAMGSGGKKPFSRAMESMIDNEARHVVASAYQTTEGIL 757

Query:   169 ---RDNMDKLTLSFLSK 182
                RD ++KL  + L K
Sbjct:   758 TTHRDKLEKLAEALLEK 774

GO:0006508 "proteolysis" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0008237 "metallopeptidase activity" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0030163 "protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-5391 spg7 "spastic paraplegia 7" [Danio rerio (taxid:7955)]

 Score = 340 (124.7 bits), Expect = 2.4e-45, Sum P(2) = 2.4e-45
 Identities = 68/123 (55%), Positives = 92/123 (74%)

Query:    58 LG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIR 116
             LG A+  P +Q L+ KE+LF+RMCMALGGRA+EAI FN++T+GAQ+DL+KVT +A   ++
Sbjct:   595 LGFAQILPRDQFLFTKEQLFERMCMALGGRASEAITFNKVTTGAQDDLRKVTRVAYSMVK 654

Query:   117 QFGMNENIGLVSFPKDDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDK 174
             Q+GM +++G VSFP  +N+  I  RP+S+ L   MD EA  LIA+ Y HTEK+L DN DK
Sbjct:   655 QYGMVDSVGQVSFPDSENQSGIGRRPFSQGLQQQMDLEAKMLIAKAYRHTEKLLLDNRDK 714

Query:   175 LTL 177
             L L
Sbjct:   715 LIL 717

GO:0030163 "protein catabolic process" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2385906 Spg7 "spastic paraplegia 7 homolog (human)" [Mus musculus (taxid:10090)]

 Score = 333 (122.3 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
 Identities = 69/122 (56%), Positives = 91/122 (74%)

Query:    58 LG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIR 116
             LG ++  P +Q L+ KE+LF+RMCMALGGRAAEAI F+R+TSGAQ+DL+KVT +A   ++
Sbjct:   604 LGFSQMLPRDQYLFTKEQLFERMCMALGGRAAEAISFSRVTSGAQDDLRKVTRIAYSMVK 663

Query:   117 QFGMNENIGLVSFPK-DDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMD 173
             QFGM  +IG VSFP+  +    I  RP+S+ L  +MD EA  L+A+ Y HTEKVL DN+D
Sbjct:   664 QFGMAPSIGPVSFPEAQEGLMGIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEKVLLDNLD 723

Query:   174 KL 175
             KL
Sbjct:   724 KL 725

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0007155 "cell adhesion" evidence=TAS

GO:0008089 "anterograde axon cargo transport" evidence=IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=TAS

GO:0030163 "protein catabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9UQ90 SPG7 "Paraplegin" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 67/122 (54%), Positives = 90/122 (73%)

Query:    58 LG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIR 116
             LG A+  P +Q L+ KE+LF+RMCMALGGRA+EA+ FN +TSGAQ+DL+KVT +A   ++
Sbjct:   604 LGFAQMLPRDQHLFTKEQLFERMCMALGGRASEALSFNEVTSGAQDDLRKVTRIAYSMVK 663

Query:   117 QFGMNENIGLVSFPK-DDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMD 173
             QFGM   IG +SFP+  +    I  RP+S+ L  +MD EA  L+A+ Y HTEKVL+DN+D
Sbjct:   664 QFGMAPGIGPISFPEAQEGLMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLD 723

Query:   174 KL 175
             KL
Sbjct:   724 KL 725

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0004222 "metalloendopeptidase activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=TAS

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0008233 "peptidase activity" evidence=TAS

RGD|727940 Spg7 "spastic paraplegia 7 homolog (human)" [Rattus norvegicus (taxid:10116)]

 Score = 330 (121.2 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
 Identities = 69/122 (56%), Positives = 91/122 (74%)

Query:    58 LG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIR 116
             LG ++  P +Q L+ KE+LF+RMCMALGGRAAEAI F+R+TSGAQ+DL+KVT +A   ++
Sbjct:   567 LGFSQMLPRDQYLFTKEQLFERMCMALGGRAAEAISFSRVTSGAQDDLRKVTRIAYSMVK 626

Query:   117 QFGMNENIGLVSFPK-DDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMD 173
             QFGM  +IG VSFP+  +    I  RP+S+ L  +MD EA  L+A+ Y HTEKVL DN+D
Sbjct:   627 QFGMAPSIGPVSFPEAQEGLVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLD 686

Query:   174 KL 175
             KL
Sbjct:   687 KL 688

GO:0003674 "molecular_function" evidence=ND

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA;ISO

GO:0008089 "anterograde axon cargo transport" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

UNIPROTKB|Q7TT47 Spg7 "Paraplegin" [Rattus norvegicus (taxid:10116)]

 Score = 330 (121.2 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
 Identities = 69/122 (56%), Positives = 91/122 (74%)

Query:    58 LG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIR 116
             LG ++  P +Q L+ KE+LF+RMCMALGGRAAEAI F+R+TSGAQ+DL+KVT +A   ++
Sbjct:   567 LGFSQMLPRDQYLFTKEQLFERMCMALGGRAAEAISFSRVTSGAQDDLRKVTRIAYSMVK 626

Query:   117 QFGMNENIGLVSFPK-DDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMD 173
             QFGM  +IG VSFP+  +    I  RP+S+ L  +MD EA  L+A+ Y HTEKVL DN+D
Sbjct:   627 QFGMAPSIGPVSFPEAQEGLVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLD 686

Query:   174 KL 175
             KL
Sbjct:   687 KL 688

GO:0005524 "ATP binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|E2R4F3 SPG7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 329 (120.9 bits), Expect = 4.3e-43, Sum P(2) = 4.3e-43
 Identities = 66/122 (54%), Positives = 90/122 (73%)

Query:    58 LG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIR 116
             LG A+  P +Q L+ KE+LF+RMCMALGGR +E I FN++TSGAQ+DL+KVT +A   ++
Sbjct:   604 LGFAQMLPRDQHLFTKEQLFERMCMALGGRVSETISFNKVTSGAQDDLRKVTRIAYSMVK 663

Query:   117 QFGMNENIGLVSFPK-DDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMD 173
             QFGM  +IG +SFP+  +    I  RP+S+ L  +MD EA  L+A+ Y HTEKVL+DN+D
Sbjct:   664 QFGMAPSIGPISFPEVQEGLTGIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEKVLQDNLD 723

Query:   174 KL 175
             KL
Sbjct:   724 KL 725

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|A7E2Z6 SPG7 "SPG7 protein" [Bos taurus (taxid:9913)]

 Score = 327 (120.2 bits), Expect = 5.1e-43, Sum P(2) = 5.1e-43
 Identities = 67/122 (54%), Positives = 91/122 (74%)

Query:    58 LG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIR 116
             LG A+  P +Q L+ +E+LF+RMCMALGGRA+E+I FNR+TSGAQ+DL+KVT +A   ++
Sbjct:   604 LGFAQMLPRDQHLFTREQLFERMCMALGGRASESISFNRVTSGAQDDLRKVTRIAYSMVK 663

Query:   117 QFGMNENIGLVSFPK-DDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMD 173
             QFGM  +IG VSFP+  +    I  RP+S+ L  ++D EA  L+A  Y HTE+VLRDN+D
Sbjct:   664 QFGMAPSIGPVSFPEAQEGVTGIGRRPFSQGLQQMIDHEARLLVATAYRHTEQVLRDNLD 723

Query:   174 KL 175
             KL
Sbjct:   724 KL 725

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1NXP0 SPG7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 324 (119.1 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
 Identities = 67/125 (53%), Positives = 91/125 (72%)

Query:    58 LG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIR 116
             LG A+  P EQ L+ KE+L +RMCMALGGR +EAI FN++T+GAQ+DLK+VT++A   ++
Sbjct:   577 LGFAQILPREQYLFTKEQLLERMCMALGGRVSEAITFNKVTTGAQDDLKRVTKIAYSMVK 636

Query:   117 QFGMNENIGLVSFPKDDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDK 174
             Q+GM  +IG +SFP  ++   I  RP+S+ L  +MD EA  L+AQ Y  TEK+L DN DK
Sbjct:   637 QYGMVPSIGQISFPDGESTVGIGRRPFSQGLQQMMDHEAKVLVAQAYRRTEKLLLDNRDK 696

Query:   175 L-TLS 178
             L TLS
Sbjct:   697 LQTLS 701

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

WB|WBGene00021425 ppgn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 298 (110.0 bits), Expect = 4.6e-38, Sum P(2) = 4.6e-38
 Identities = 58/119 (48%), Positives = 88/119 (73%)

Query:    58 LG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIR 116
             LG A+Y+P ++ L++K+ELFDRMCM LGGR AE + F R TSGAQ+DL+KVT+ A  Q++
Sbjct:   585 LGFAQYSPRDKHLFSKDELFDRMCMMLGGRCAENLKFGRATSGAQDDLQKVTKSAYAQVK 644

Query:   117 QFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
              +GM+  +G +SFP  +  Q I+PYSK+ A+  D+EA+ ++A+    T  ++++NMDKL
Sbjct:   645 LYGMSSIVGPLSFPNTEGFQ-IKPYSKKFASTFDQEATLIVAKANEATTDLIKNNMDKL 702

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UQ90	SPG7_HUMAN	3, ., 4, ., 2, 4, ., -	0.5462	0.6373	0.1459	yes	N/A
Q7TT47	SPG7_RAT	3, ., 4, ., 2, 4, ., -	0.5826	0.6153	0.1505	yes	N/A
Q3ULF4	SPG7_MOUSE	3, ., 4, ., 2, 4, ., -	0.5826	0.6153	0.1434	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	182
pfam01434	212	pfam01434, Peptidase_M41, Peptidase family M41	3e-39
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	2e-29
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	2e-23
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	2e-16
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	2e-11
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	4e-09
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	5e-09
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	4e-07
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	3e-05

>gnl|CDD|216502 pfam01434, Peptidase_M41, Peptidase family M41

 Score =  132 bits (335), Expect = 3e-39
 Identities = 47/131 (35%), Positives = 77/131 (58%), Gaps = 11/131 (8%)

Query: 56  QNLG-AKYTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFN--RITSGAQNDLKKVTEMA 111
           Q LG  ++ P E K LY K +L  R+ +ALGGRAAE ++F    +T+GA NDL++ T++A
Sbjct: 61  QALGYTQFLPEEDKLLYTKSQLLARIDVALGGRAAEELIFGDDEVTTGASNDLEQATKIA 120

Query: 112 NMQIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHT 164
              + +FGM++ +G VS    D            + YS+  A ++DEE  +L+ + Y   
Sbjct: 121 RQMVTEFGMSDKLGPVSLEDSDGEVFLGRGMGKRKEYSEETADIIDEEVRRLLEEAYERA 180

Query: 165 EKVLRDNMDKL 175
           +++L +N D+L
Sbjct: 181 KEILTENRDEL 191

Length = 212

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score =  112 bits (282), Expect = 2e-29
 Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 9/131 (6%)

Query: 56  QNLG-AKYTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANM 113
           Q LG  ++ P E K LY K +L  ++ + LGGRAAE I+F  +T+GA ND+K+ T +A  
Sbjct: 344 QALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTGASNDIKQATNIARA 403

Query: 114 QIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEK 166
            + ++GM++ +G V++  D             + YS+  A  +DEE  ++I + Y   ++
Sbjct: 404 MVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQ 463

Query: 167 VLRDNMDKLTL 177
           +L +N D+L L
Sbjct: 464 ILTENRDELEL 474

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 95.5 bits (238), Expect = 2e-23
 Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 7/121 (5%)

Query: 62  YTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNR-ITSGAQNDLKKVTEMANMQIRQFG 119
           + P E K L +KEEL DR+ + LGGRAAE ++F   IT+GA NDL+K T++A   + ++G
Sbjct: 446 FLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASNDLEKATDLARAMVTEYG 505

Query: 120 MNENIGLVSFPKDD-----NRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDK 174
           M+  +G V++ + +       Q  + YS+  A  +D E   +I + Y   +++L +N D 
Sbjct: 506 MSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDA 565

Query: 175 L 175
           L
Sbjct: 566 L 566

Length = 596

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 15/128 (11%)

Query: 62  YTPSE-QKLYNKEELFDRMCMALGGRAAEAIVFN--RITSGAQNDLKKVTEMANMQIRQF 118
           +TP E Q L ++ ++  R+  ALGGRAAE +VF    +T+GA NDL++VT +A   + +F
Sbjct: 478 FTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRF 537

Query: 119 GMNENIGLVSFPKDDNRQ-----SIR---PYSKRLAALMDEEASKLIAQCYMHTEKVLRD 170
           GM+ +IG +S   +++        ++    YS+ +A  +D E   ++  CY +  ++L+D
Sbjct: 538 GMS-SIGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKD 596

Query: 171 N---MDKL 175
           N   +D L
Sbjct: 597 NRVLIDLL 604

Length = 638

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 10 SRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
          S+AK      L      V F DVAG+ EAK E+ME VD+LK P  +  LGAK
Sbjct: 40 SKAKL-----LNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAK 86

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 5/52 (9%)

Query: 10  SRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
           S+AK  L D        V F+DVAG+ EAK E+ E VD+LK P+ YQ LGAK
Sbjct: 135 SKAKLYLED-----QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAK 181

Length = 596

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score = 54.3 bits (130), Expect = 5e-09
 Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 9/114 (7%)

Query: 71  NKEELFDRMCMALGGRAAEAIVF--NRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVS 128
           ++++L  ++    GGR AE I++    +++GA ND+K  T +A   + Q+G +E +G + 
Sbjct: 458 SRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLL 517

Query: 129 FPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
           + +++            +  S   A ++D+E   LI + Y    ++L DNMD L
Sbjct: 518 YAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDIL 571

Length = 644

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 26  GVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKY 62
           G+ F D+AG+ EAK E  E V +LK+PE +  +GAK 
Sbjct: 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKI 215

Length = 638

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 29  FSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
           F+DVAG  EAK EV E V+YL+ P  +Q LG K
Sbjct: 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGK 183

Length = 644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
2ce7_A	476	Edta Treated Length = 476		5e-19
3kds_E	465	Apo-ftsh Crystal Structure Length = 465		5e-19
2dhr_A	499	Whole Cytosolic Region Of Atp-Dependent Metalloprot		4e-14
4eiw_A	508	Whole Cytosolic Region Of Atp-Dependent Metalloprot		4e-14
2di4_A	238	Crystal Structure Of The Ftsh Protease Domain Lengt		1e-10
2qz4_A	262	Human Paraplegin, Aaa Domain In Complex With Adp Le		2e-08
2r62_A	268	Crystal Structure Of Helicobacter Pylori Atp Depend		2e-06
1lv7_A	257	Crystal Structure Of The Aaa Domain Of Ftsh Length		1e-04

>pdb|2CE7|A Chain A, Edta Treated Length = 476

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 77/127 (60%), Gaps = 9/127 (7%)
Query: 52  PEYYQNLG-AKYTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTE 109
           P  Y+ LG   + P E K L ++ EL D++   LGGRAAE +VF  +TSGA ND+++ TE
Sbjct: 302 PRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATE 361
Query: 110 MANMQIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYM 162
           +A   + Q GM+E +G +++ K++           +R YS+ +A+ +DEE  K++  CY 
Sbjct: 362 IARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYE 421
Query: 163 HTEKVLR 169
             ++++R
Sbjct: 422 RAKEIIR 428

>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 77/127 (60%), Gaps = 9/127 (7%)
Query: 52  PEYYQNLG-AKYTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTE 109
           P  Y+ LG   + P E K L ++ EL D++   LGGRAAE +VF  +TSGA ND+++ TE
Sbjct: 302 PRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATE 361
Query: 110 MANMQIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYM 162
           +A   + Q GM+E +G +++ K++           +R YS+ +A+ +DEE  K++  CY 
Sbjct: 362 IARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYE 421
Query: 163 HTEKVLR 169
             ++++R
Sbjct: 422 RAKEIIR 428

>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
Query: 70  YNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSF 129
           ++++ L D++ +AL GRAAE IVF+ +T+GA+ND ++ TE+A   I ++GM+   G V++
Sbjct: 335 WSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITEWGMHPEFGPVAY 394
Query: 130 PKDDNR----QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVL---RDNMDKLTLSFLSK 182
              ++       +R YS+  A  +DE   +LI + Y   + +L   R+ ++++  + L +
Sbjct: 395 AVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLER 454

>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
Query: 70  YNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSF 129
           ++++ L D++ +AL GRAAE IVF+ +T+GA+ND ++ TE+A   I ++GM+   G V++
Sbjct: 344 WSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITEWGMHPEFGPVAY 403
Query: 130 PKDDNR----QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVL---RDNMDKLTLSFLSK 182
              ++       +R YS+  A  +DE   +LI + Y   + +L   R+ ++++  + L +
Sbjct: 404 AVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLER 463

>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain Length = 238

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 71/125 (56%), Gaps = 18/125 (14%)
Query: 64  PSEQK-LYNKEELFDRMCMALGGRAAEAIVFNR--ITSGAQNDLKKVTEMANMQIRQFGM 120
           P E K +Y+K++L++++ + LGGRAAE + F +  IT+GA+NDL++ T++A   +  +GM
Sbjct: 58  PIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGM 117
Query: 121 NENIGLVSFPKDDNRQSIRPY----------SKRLAALMDEEASKLIAQCYMHTEKVLRD 170
           ++ +G ++      R+   P+          S  L   +DEE  ++I + Y   + ++ +
Sbjct: 118 SDKVGPIAI-----RRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEE 172
Query: 171 NMDKL 175
             + L
Sbjct: 173 YKEPL 177

>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 28/36 (77%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
          GV F DVAG+ EAK+EV EFVDYLK PE +  LGAK
Sbjct: 2  GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAK 37

>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
          V+F D+AG  EAK EV+E VD+LK PE Y NLGAK
Sbjct: 8  VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAK 42

>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 29 FSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKY 62
          F+DVAG  EAK EV E V+YL+ P  +Q LG K 
Sbjct: 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKI 44

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
2di4_A	238	Zinc protease, cell division protein FTSH homolog;	4e-32
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	4e-31
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	2e-10
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	1e-30
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	1e-09
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	9e-13
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	1e-09
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	2e-09
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	8e-09
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	1e-08
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	1e-04
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	2e-04
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	3e-04
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	5e-04
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	9e-04

>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1 Length = 238

 Score =  114 bits (287), Expect = 4e-32
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 10/123 (8%)

Query: 62  YTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNR--ITSGAQNDLKKVTEMA-NMQIRQ 117
             P E K +Y+K++L++++ + LGGRAAE + F +  IT+GA+NDL++ T++A  M +  
Sbjct: 56  QLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRM-VSM 114

Query: 118 FGMNENIGLVSFPKDDN-----RQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNM 172
           +GM++ +G ++  +  N       +    S  L   +DEE  ++I + Y   + ++ +  
Sbjct: 115 WGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYK 174

Query: 173 DKL 175
           + L
Sbjct: 175 EPL 177

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score =  116 bits (293), Expect = 4e-31
 Identities = 36/116 (31%), Positives = 67/116 (57%), Gaps = 4/116 (3%)

Query: 64  PSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNEN 123
             +   ++++ L D++ +AL GRAAE IVF+ +T+GA+ND ++ TE+A   I ++GM+  
Sbjct: 329 REDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITEWGMHPE 388

Query: 124 IGLVSFPKDDNR----QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
            G V++   ++       +R YS+  A  +DE   +LI + Y   + +L +  + L
Sbjct: 389 FGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVL 444

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)

Query: 10 SRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
          SRA+      ++     V F DVAG  EAK E+ E V++LK P  +  +GA+
Sbjct: 17 SRAR------VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR 62

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score =  114 bits (288), Expect = 1e-30
 Identities = 43/122 (35%), Positives = 74/122 (60%), Gaps = 8/122 (6%)

Query: 62  YTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGM 120
           + P E K L ++ EL D++   LGGRAAE +VF  +TSGA ND+++ TE+A   + Q GM
Sbjct: 313 HLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGM 372

Query: 121 NENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMD 173
           +E +G +++ K++           +R YS+ +A+ +DEE  K++  CY   ++++R    
Sbjct: 373 SEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRK 432

Query: 174 KL 175
           +L
Sbjct: 433 QL 434

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
          V F DV G  EA  E+ E V++LK P  +  +GA+
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGAR 47

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score = 63.4 bits (155), Expect = 9e-13
 Identities = 25/36 (69%), Positives = 28/36 (77%)

Query: 26 GVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
          GV F DVAG+ EAK+EV EFVDYLK PE +  LGAK
Sbjct: 2  GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAK 37

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 23/35 (65%), Positives = 27/35 (77%)

Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
          V+F D+AG  EAK EV+E VD+LK PE Y NLGAK
Sbjct: 8  VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAK 42

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)

Query: 10 SRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
          SRA+      ++     V F DVAG  EAK E+ E V++LK P  +  +GA+
Sbjct: 26 SRAR------VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR 71

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score = 52.3 bits (126), Expect = 8e-09
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
            F+DVAG  EAK EV E V+YL+ P  +Q LG K
Sbjct: 9  TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGK 43

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
          V F DVAG  EAK E+ E V++LK P  +  +GA+
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR 47

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 5   FQNQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGA 60
           F+N  S     +++ +V  G  VKF D+AG   AK  + E V     RPE +  L A
Sbjct: 90  FRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA 146

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 26 GVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGA 60
           V+++D+AG   AK  + E V     RPE +  L A
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA 52

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 26  GVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGA 60
            V + D+AG+  AK  + E V + + RP+ +  L  
Sbjct: 80  PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRG 115

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 26 GVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQ 56
           VK+ DVAGL  AK  + E V   +K P  ++
Sbjct: 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFK 45

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score = 37.7 bits (88), Expect = 9e-04
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNL 58
          VK+SDVAGL  AK  + E V   +K P  +   
Sbjct: 9  VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
2di4_A	238	Zinc protease, cell division protein FTSH homolog;	100.0
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	100.0
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.97
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.25
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.14
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.13
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.05
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.95
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.94
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.49
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.3
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.94
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.39
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.17
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.83
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.47
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.29
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	94.92
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	94.38
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.03
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	93.16
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	92.88
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	91.8
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	90.96
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	90.44
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	87.81
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	85.42
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	84.11
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	83.91

>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1

Probab=100.00  E-value=2.1e-37  Score=256.15  Aligned_cols=146  Identities=25%  Similarity=0.452  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHH-HHH-hcCchh---------hccCCc-eEccc-ccccCCHHHHHHHHHHHhHHHHHHHHHh--CccccC
Q psy13368         35 LREAKVEVMEF-VDY-LKRPEY---------YQNLGA-KYTPS-EQKLYNKEELFDRMCMALGGRAAEAIVF--NRITSG   99 (182)
Q Consensus        35 ~~~a~~El~~~-V~~-l~~P~~---------~~alG~-~~~Pk-d~ll~t~~~l~~~i~v~laGraAEei~f--G~vstG   99 (182)
                      .-.||||+||+ |.| |.+++.         .+++|+ .+.|+ +.+++||++|+++|+|+|||||||+++|  |++|||
T Consensus        17 ~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgGRaAEelifG~g~vttG   96 (238)
T 2di4_A           17 EKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTG   96 (238)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhHHHHHHHHhCCCCcccC
Confidence            34599999995 556 443332         357886 45685 7899999999999999999999999999  789999


Q ss_pred             ccchHHHHHHHHHHHHHhcCCCCccceeecCCCCCC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHH
Q psy13368        100 AQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNR-----QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDK  174 (182)
Q Consensus       100 a~~Dl~~At~lA~~mV~~~Gms~~~G~~~~~~~~~~-----~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~~  174 (182)
                      |+|||++||+||+.||+.||||+++|+++|....+.     ...+++|++|...||+||++||+++|++|++||++|++.
T Consensus        97 A~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il~~ay~~a~~iL~~nr~~  176 (238)
T 2di4_A           97 AENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEP  176 (238)
T ss_dssp             GHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             hHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999754321     235789999999999999999999999999999999999


Q ss_pred             Hhhhhc
Q psy13368        175 LTLSFL  180 (182)
Q Consensus       175 le~l~~  180 (182)
                      |++|+.
T Consensus       177 L~~lA~  182 (238)
T 2di4_A          177 LKAVVK  182 (238)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999863

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=100.00  E-value=1.3e-32  Score=247.14  Aligned_cols=146  Identities=33%  Similarity=0.547  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHH-HHH-hcCchh----------hccCCc-eEccc-ccccCCHHHHHHHHHHHhHHHHHHHHHhCccccCc
Q psy13368         35 LREAKVEVMEF-VDY-LKRPEY----------YQNLGA-KYTPS-EQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGA  100 (182)
Q Consensus        35 ~~~a~~El~~~-V~~-l~~P~~----------~~alG~-~~~Pk-d~ll~t~~~l~~~i~v~laGraAEei~fG~vstGa  100 (182)
                      ...|+||+||+ |.| +++++.          .+++|+ ++.|+ +.+++||++|+++|+|+|||||||+++||++||||
T Consensus       273 ~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga  352 (476)
T 2ce7_A          273 RIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGA  352 (476)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGG
T ss_pred             hhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccCHHHHHHHHHHHHhHHHHHhhhcCCCCccc
Confidence            44599999995 455 554443          267886 45685 78999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHhcCCCCccceeecCCCCCC-------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHH
Q psy13368        101 QNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMD  173 (182)
Q Consensus       101 ~~Dl~~At~lA~~mV~~~Gms~~~G~~~~~~~~~~-------~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~  173 (182)
                      +|||++||+||+.||++||||+++|+++|......       ...+++|+++...||+||+++|+++|++|++||++|++
T Consensus       353 ~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  432 (476)
T 2ce7_A          353 ANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRK  432 (476)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999998765321       23578999999999999999999999999999999999


Q ss_pred             HHhhhhc
Q psy13368        174 KLTLSFL  180 (182)
Q Consensus       174 ~le~l~~  180 (182)
                      .|++++.
T Consensus       433 ~l~~~a~  439 (476)
T 2ce7_A          433 QLDNIVE  439 (476)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999863

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.97  E-value=2.8e-31  Score=239.63  Aligned_cols=144  Identities=29%  Similarity=0.477  Sum_probs=126.2

Q ss_pred             HHHHHHHHHH-HHH-hcCchhh---------ccCCceEccc--ccccCCHHHHHHHHHHHhHHHHHHHHHhCccccCccc
Q psy13368         36 REAKVEVMEF-VDY-LKRPEYY---------QNLGAKYTPS--EQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQN  102 (182)
Q Consensus        36 ~~a~~El~~~-V~~-l~~P~~~---------~alG~~~~Pk--d~ll~t~~~l~~~i~v~laGraAEei~fG~vstGa~~  102 (182)
                      ..|+||++|+ +.| |.+++.+         +++|+.+ |+  +.+++||.+|+++|+++||||+||+++||++||||+|
T Consensus       289 ~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~-p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~  367 (499)
T 2dhr_A          289 ITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM-PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAEN  367 (499)
T ss_dssp             HHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH-HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCH
T ss_pred             hhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc-cchhhhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHH
Confidence            4599999996 455 4554432         5788876 75  8889999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCCCccceeecCCCCCC----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHhhh
Q psy13368        103 DLKKVTEMANMQIRQFGMNENIGLVSFPKDDNR----QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTLS  178 (182)
Q Consensus       103 Dl~~At~lA~~mV~~~Gms~~~G~~~~~~~~~~----~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~~le~l  178 (182)
                      ||++||+||+.||++||||+++|+++|....+.    ...+++|+++...||+||++||+++|++|++||++|++.|+++
T Consensus       368 Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~  447 (499)
T 2dhr_A          368 DFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERV  447 (499)
T ss_dssp             HHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998765421    0146899999999999999999999999999999999999998


Q ss_pred             hc
Q psy13368        179 FL  180 (182)
Q Consensus       179 ~~  180 (182)
                      +.
T Consensus       448 a~  449 (499)
T 2dhr_A          448 AE  449 (499)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.25  E-value=3.6e-07  Score=80.42  Aligned_cols=58  Identities=28%  Similarity=0.477  Sum_probs=51.3

Q ss_pred             cCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368         21 VGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM   79 (182)
Q Consensus        21 ~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i   79 (182)
                      +.+.|+|+|+||+|+++++.|+.++|.| |++|+.|..+|..+ |++.+||    |.++++++-
T Consensus       139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~-prGvLL~GPPGTGKTllAkA  201 (405)
T 4b4t_J          139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ-PKGVILYGPPGTGKTLLARA  201 (405)
T ss_dssp             EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-CCCEEEESCSSSSHHHHHHH
T ss_pred             ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCceEEeCCCCCCHHHHHHH
Confidence            3467999999999999999999999999 99999999999885 8898888    777777754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.14  E-value=9.3e-07  Score=79.03  Aligned_cols=57  Identities=30%  Similarity=0.464  Sum_probs=51.0

Q ss_pred             CCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368         22 GGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM   79 (182)
Q Consensus        22 ~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i   79 (182)
                      .+.|+|+|+||+|++++|.++.++|.+ |++|+.|..+|..+ |++.+||    |.++++++-
T Consensus       201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~p-prGILLyGPPGTGKTlLAkA  262 (467)
T 4b4t_H          201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDP-PKGILLYGPPGTGKTLCARA  262 (467)
T ss_dssp             ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-CSEEEECSCTTSSHHHHHHH
T ss_pred             cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCC-CCceEeeCCCCCcHHHHHHH
Confidence            368999999999999999999999988 99999999999884 8899888    777777764

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.13  E-value=1.3e-06  Score=77.55  Aligned_cols=57  Identities=30%  Similarity=0.522  Sum_probs=50.8

Q ss_pred             CCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368         22 GGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM   79 (182)
Q Consensus        22 ~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i   79 (182)
                      .+.|+|+|+||+|++++|.++.++|.+ |++|+.|..+|..+ |++.+||    |.++++++-
T Consensus       174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~-prGvLLyGPPGTGKTlLAkA  235 (437)
T 4b4t_I          174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKP-PKGVILYGAPGTGKTLLAKA  235 (437)
T ss_dssp             ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC-CSEEEEESSTTTTHHHHHHH
T ss_pred             ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCCCceECCCCchHHHHHHH
Confidence            468999999999999999999999988 99999999999885 8898888    777777753

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.05  E-value=1.4e-06  Score=77.25  Aligned_cols=56  Identities=30%  Similarity=0.541  Sum_probs=50.1

Q ss_pred             CCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368         23 GGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM   79 (182)
Q Consensus        23 ~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i   79 (182)
                      +.|+|+|+||+|+++++.++.++|.| |++|+.|..+|..+ |++.+||    |.++++++-
T Consensus       174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~-prGvLL~GPPGtGKTllAkA  234 (437)
T 4b4t_L          174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKP-PKGVLLYGPPGTGKTLLAKA  234 (437)
T ss_dssp             ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-CCEEEEESCTTSSHHHHHHH
T ss_pred             cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCeEEEECCCCCcHHHHHHH
Confidence            58999999999999999999999998 99999999999874 8898888    777777753

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.95  E-value=4e-06  Score=74.16  Aligned_cols=57  Identities=26%  Similarity=0.471  Sum_probs=50.4

Q ss_pred             CCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368         22 GGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM   79 (182)
Q Consensus        22 ~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i   79 (182)
                      .+.|+|+|+||+|++++|.++.+.|.+ +++|+.|..+|..+ |++.+||    |.++++++-
T Consensus       164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~-prGiLL~GPPGtGKT~lakA  225 (428)
T 4b4t_K          164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDP-PRGVLLYGPPGTGKTMLVKA  225 (428)
T ss_dssp             ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-CCEEEEESCTTTTHHHHHHH
T ss_pred             CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CceEEEECCCCCCHHHHHHH
Confidence            468999999999999999999999887 99999999999875 8898888    777777764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.94  E-value=3.6e-06  Score=74.64  Aligned_cols=58  Identities=26%  Similarity=0.532  Sum_probs=50.4

Q ss_pred             CCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHHH
Q psy13368         22 GGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRMC   80 (182)
Q Consensus        22 ~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i~   80 (182)
                      .+.|+++|+||+|++++|.++.+.|.+ |++|+.|..+|..+ |++.+||    |.++++++-.
T Consensus       173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~-prGvLLyGPPGTGKTllAkAi  235 (434)
T 4b4t_M          173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA-PKGALMYGPPGTGKTLLARAC  235 (434)
T ss_dssp             ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC-CCEEEEESCTTSSHHHHHHHH
T ss_pred             CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCeeEEECcCCCCHHHHHHHH
Confidence            368999999999999999999998766 99999999999885 8898888    7777777643

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.49  E-value=9.1e-05  Score=66.62  Aligned_cols=69  Identities=35%  Similarity=0.514  Sum_probs=52.0

Q ss_pred             CCCCCCcccccccccccCCCCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC----CHHHHHHHHH
Q psy13368          5 FQNQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY----NKEELFDRMC   80 (182)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i~   80 (182)
                      |..++|++|++.      +.++++|+||+|+++++.++.+++.++.+|..+..+|... |++.+|+    |.++++.+..
T Consensus        12 ~~~~~~~~~~~~------~~~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~i-p~GvLL~GppGtGKTtLaraI   84 (499)
T 2dhr_A           12 FSFTKSRARVLT------EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI-PKGVLLVGPPGVGKTHLARAV   84 (499)
T ss_dssp             ------CCEEEC------SCCCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCC-CSEEEEECSSSSSHHHHHHHH
T ss_pred             CCcccCcceeec------cCCCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCC-CceEEEECCCCCCHHHHHHHH
Confidence            567889998764      3489999999999999999999999999999999999874 7776666    6666655543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.30  E-value=9.7e-05  Score=70.01  Aligned_cols=56  Identities=27%  Similarity=0.534  Sum_probs=49.5

Q ss_pred             CCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368         23 GGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM   79 (182)
Q Consensus        23 ~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i   79 (182)
                      ..++|+|+||+|+++++.++.++|.+ |++|+.|..+|..+ |++.+||    |.++++.+.
T Consensus       197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~-p~GILL~GPPGTGKT~LAra  257 (806)
T 3cf2_A          197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-PRGILLYGPPGTGKTLIARA  257 (806)
T ss_dssp             CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCC-CCEEEEECCTTSCHHHHHHH
T ss_pred             cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCC-CCeEEEECCCCCCHHHHHHH
Confidence            46899999999999999999999999 99999999999984 8898888    777776653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.94  E-value=0.00078  Score=60.17  Aligned_cols=54  Identities=35%  Similarity=0.604  Sum_probs=45.4

Q ss_pred             CCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC----CHHHHHHH
Q psy13368         24 GRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY----NKEELFDR   78 (182)
Q Consensus        24 ~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~   78 (182)
                      .++++|+||+|+++++.++.+++.++++|..+..+|... |++.+|+    |.++++.+
T Consensus        10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~-p~gvLL~GppGtGKT~Lar   67 (476)
T 2ce7_A           10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARM-PKGILLVGPPGTGKTLLAR   67 (476)
T ss_dssp             SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCC-CSEEEEECCTTSSHHHHHH
T ss_pred             CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCC-CCeEEEECCCCCCHHHHHH
Confidence            689999999999999999999999999999999998874 7776665    55555554

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.39  E-value=0.0013  Score=54.18  Aligned_cols=47  Identities=19%  Similarity=0.343  Sum_probs=31.1

Q ss_pred             CCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC
Q psy13368         23 GGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY   70 (182)
Q Consensus        23 ~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~   70 (182)
                      +.|+++|+||+|+++++.++.+.|.+ +.+|..+..+|..+ |++.+++
T Consensus         3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~-~~GvlL~   50 (274)
T 2x8a_A            3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVT-PAGVLLA   50 (274)
T ss_dssp             ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCC-CSEEEEE
T ss_pred             CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC-CCeEEEE
Confidence            46899999999999999999996655 89999998888764 6665555

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.17  E-value=0.0018  Score=61.38  Aligned_cols=56  Identities=23%  Similarity=0.459  Sum_probs=47.7

Q ss_pred             CCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHH
Q psy13368         22 GGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDR   78 (182)
Q Consensus        22 ~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~   78 (182)
                      .+.++++|+|++|++++|.++.++|.| +++|..|..+|..+ |++.+||    |.++++++
T Consensus       469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~-~~gvLl~GPPGtGKT~lAk  529 (806)
T 3cf2_A          469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP-SKGVLFYGPPGCGKTLLAK  529 (806)
T ss_dssp             CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCC-CSCCEEESSTTSSHHHHHH
T ss_pred             ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCC-CceEEEecCCCCCchHHHH
Confidence            357899999999999999999999988 89999999999874 7787776    66666665

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.83  E-value=0.0053  Score=51.45  Aligned_cols=36  Identities=42%  Similarity=0.469  Sum_probs=31.3

Q ss_pred             cCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhc
Q psy13368         21 VGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQ   56 (182)
Q Consensus        21 ~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~   56 (182)
                      +.+.+.++|+||+|+++++.++.+.|.+ +++|..+.
T Consensus         3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~   39 (322)
T 1xwi_A            3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT   39 (322)
T ss_dssp             EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC
T ss_pred             eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh
Confidence            3468899999999999999999998877 88887765

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.47  E-value=0.0075  Score=49.79  Aligned_cols=48  Identities=25%  Similarity=0.489  Sum_probs=38.3

Q ss_pred             CCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC
Q psy13368         22 GGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY   70 (182)
Q Consensus        22 ~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~   70 (182)
                      .+.+.++|+||+|++.++.++.+.+.+ +++|+.+..+|... |...+++
T Consensus         7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~-~~~vLL~   55 (301)
T 3cf0_A            7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP-SKGVLFY   55 (301)
T ss_dssp             EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-CSEEEEE
T ss_pred             ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC-CceEEEE
Confidence            457899999999999999999999887 88898887776542 4444444

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.29  E-value=0.012  Score=46.51  Aligned_cols=45  Identities=60%  Similarity=0.911  Sum_probs=32.2

Q ss_pred             CCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC
Q psy13368         25 RGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY   70 (182)
Q Consensus        25 ~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~   70 (182)
                      ++++|+|+.|.+.++.++.+++.++.+|..+..+|... |...+++
T Consensus         1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~-~~~vll~   45 (262)
T 2qz4_A            1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKV-PKGALLL   45 (262)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCC-CCEEEEE
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCC-CceEEEE
Confidence            57899999999999999999999999999888777652 4454444

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=94.92  E-value=0.021  Score=45.50  Aligned_cols=47  Identities=43%  Similarity=0.656  Sum_probs=35.0

Q ss_pred             CCCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC
Q psy13368         23 GGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY   70 (182)
Q Consensus        23 ~~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~   70 (182)
                      ..+.++|+|+.|.+.++.++.+++.++.+|..+..+|... |.+.+++
T Consensus         5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vll~   51 (257)
T 1lv7_A            5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKI-PKGVLMV   51 (257)
T ss_dssp             CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CC-CCEEEEE
T ss_pred             cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCC-CCeEEEE
Confidence            4688999999999999999999999999998887777653 5554444

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=94.38  E-value=0.041  Score=43.70  Aligned_cols=50  Identities=38%  Similarity=0.633  Sum_probs=39.2

Q ss_pred             ccCCCCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC
Q psy13368         20 LVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY   70 (182)
Q Consensus        20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~   70 (182)
                      ++.+.+.++|+|+.|.+.++.++.+++.++.+|..+..+|... |++.+++
T Consensus         6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~g~ll~   55 (254)
T 1ixz_A            6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI-PKGVLLV   55 (254)
T ss_dssp             --CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCC-CSEEEEE
T ss_pred             cccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCC-CCeEEEE
Confidence            3567899999999999999999999988888888777777653 5554444

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.03  E-value=0.033  Score=44.45  Aligned_cols=56  Identities=46%  Similarity=0.682  Sum_probs=45.6

Q ss_pred             CCCCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC----CHHHHHHH
Q psy13368         22 GGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY----NKEELFDR   78 (182)
Q Consensus        22 ~~~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~   78 (182)
                      .+.+.++|+|+.|.+.++.++.+++.++.+|+.+..+|... |.+.+++    |.++.+.+
T Consensus         3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vll~G~~GtGKT~la~   62 (268)
T 2r62_A            3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAK   62 (268)
T ss_dssp             CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCC-CSCCCCBCSSCSSHHHHHH
T ss_pred             ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCC-CceEEEECCCCCcHHHHHH
Confidence            35788999999999999999999999999999998888763 6676666    55555554

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=93.16  E-value=0.1  Score=42.16  Aligned_cols=49  Identities=39%  Similarity=0.634  Sum_probs=38.8

Q ss_pred             cCCCCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC
Q psy13368         21 VGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY   70 (182)
Q Consensus        21 ~~~~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~   70 (182)
                      +...+.++|+|+.|.++++.++.+++.++.+|..+..++... |.+.+++
T Consensus        31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~-~~gvll~   79 (278)
T 1iy2_A           31 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI-PKGVLLV   79 (278)
T ss_dssp             BCCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCC-CCEEEEE
T ss_pred             ccCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCC-CCeEEEE
Confidence            346799999999999999999999988888887777776653 5554444

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=92.88  E-value=0.068  Score=44.30  Aligned_cols=38  Identities=34%  Similarity=0.488  Sum_probs=32.0

Q ss_pred             ccCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhcc
Q psy13368         20 LVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQN   57 (182)
Q Consensus        20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~a   57 (182)
                      ++.+.+.++|+|+.|++.++.++.+.+.+ +++|..+..
T Consensus         8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~   46 (322)
T 3eie_A            8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG   46 (322)
T ss_dssp             SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT
T ss_pred             eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc
Confidence            34568999999999999999999998877 777877654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=91.80  E-value=0.11  Score=43.90  Aligned_cols=38  Identities=34%  Similarity=0.488  Sum_probs=28.5

Q ss_pred             ccCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhcc
Q psy13368         20 LVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQN   57 (182)
Q Consensus        20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~a   57 (182)
                      ++...+.++|+||.|++.++.++.+.+.+ ++.|..+..
T Consensus        41 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~   79 (355)
T 2qp9_X           41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG   79 (355)
T ss_dssp             ------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS
T ss_pred             hcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc
Confidence            34457899999999999999999998877 788877664

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=90.96  E-value=0.16  Score=44.22  Aligned_cols=37  Identities=41%  Similarity=0.482  Sum_probs=30.7

Q ss_pred             ccCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhc
Q psy13368         20 LVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQ   56 (182)
Q Consensus        20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~   56 (182)
                      ++...+.++|+||.|++.++.++.++|.+ +++|..|.
T Consensus       124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~  161 (444)
T 2zan_A          124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT  161 (444)
T ss_dssp             CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS
T ss_pred             eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh
Confidence            34567899999999999999999998866 77777654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=90.44  E-value=0.13  Score=41.13  Aligned_cols=39  Identities=31%  Similarity=0.656  Sum_probs=32.7

Q ss_pred             CCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCce
Q psy13368         23 GGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAK   61 (182)
Q Consensus        23 ~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~   61 (182)
                      ..+.++|+|+.|.+.++.++.+.+.+ +.+|..+..+|..
T Consensus        10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~   49 (285)
T 3h4m_A           10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIE   49 (285)
T ss_dssp             SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCC
T ss_pred             CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC
Confidence            57899999999999999999998766 7788777666643

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=85.42  E-value=0.39  Score=42.63  Aligned_cols=54  Identities=28%  Similarity=0.578  Sum_probs=42.1

Q ss_pred             CCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368         25 RGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM   79 (182)
Q Consensus        25 ~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i   79 (182)
                      +.++|+|+.|++.++.++.+.+.+ +++|..+..+|... |...+++    |.++++.+.
T Consensus       199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~-~~~vLL~GppGtGKT~lAra  257 (489)
T 3hu3_A          199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-PRGILLYGPPGTGKTLIARA  257 (489)
T ss_dssp             TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-CCEEEEECSTTSSHHHHHHH
T ss_pred             CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCC-CCcEEEECcCCCCHHHHHHH
Confidence            568999999999999999998877 88899988888763 5566655    555555543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=84.11  E-value=0.85  Score=38.28  Aligned_cols=37  Identities=30%  Similarity=0.603  Sum_probs=30.2

Q ss_pred             ccCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhc
Q psy13368         20 LVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQ   56 (182)
Q Consensus        20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~   56 (182)
                      ++...+.++|+|+.|.+.++.++.+.+.+ +.+|..+.
T Consensus        74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~  111 (357)
T 3d8b_A           74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFT  111 (357)
T ss_dssp             TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSC
T ss_pred             cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHh
Confidence            34456889999999999999999998877 66676554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=83.91  E-value=1.1  Score=35.99  Aligned_cols=37  Identities=38%  Similarity=0.600  Sum_probs=29.6

Q ss_pred             ccCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhc
Q psy13368         20 LVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQ   56 (182)
Q Consensus        20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~   56 (182)
                      ++...+.++|+|+.|.+.++.++.+.+.+ +.+|..+.
T Consensus        11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~   48 (297)
T 3b9p_A           11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFT   48 (297)
T ss_dssp             TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSC
T ss_pred             hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHh
Confidence            44567899999999999999999998766 55565443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d2ce7a1	193	a.269.1.1 (A:411-603) Cell division protein FtsH,	8e-23
d2di4a1	202	a.269.1.1 (A:406-607) Cell division protein FtsH,	7e-13
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	3e-08
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	4e-08
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	2e-07
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	3e-06

>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 193

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 88.2 bits (218), Expect = 8e-23
 Identities = 40/117 (34%), Positives = 72/117 (61%), Gaps = 7/117 (5%)

Query: 66  EQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIG 125
           ++ L ++ EL D++   LGGRAAE +VF  +TSGA ND+++ TE+A   + Q GM+E +G
Sbjct: 53  DKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELG 112

Query: 126 LVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
            +++ K++           +R YS+ +A+ +DEE  K++  CY   ++++R    +L
Sbjct: 113 PLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQL 169

>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 202

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 62.1 bits (150), Expect = 7e-13
 Identities = 32/113 (28%), Positives = 66/113 (58%), Gaps = 7/113 (6%)

Query: 70  YNKEELFDRMCMALGGRAAEAIVFNR--ITSGAQNDLKKVTEMANMQIRQFGMNENIGLV 127
           Y+K++L++++ + LGGRAAE + F +  IT+GA+NDL++ T++A   +  +GM++ +G +
Sbjct: 56  YDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPI 115

Query: 128 SFPKDDN-----RQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
           +  +  N       +    S  L   +DEE  ++I + Y   + ++ +  + L
Sbjct: 116 AIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPL 168

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
          V F DVAG  EAK E+ E V++LK P  +  +GA+
Sbjct: 6  VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR 40

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
            F+DVAG  EAK EV E V+YL+ P  +Q LG K
Sbjct: 9  TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGK 43

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKY 62
          V + DV G R+   ++ E V+  L+ P  ++ +G K 
Sbjct: 1  VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKP 37

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (103), Expect = 3e-06
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKY 62
          V + D+ GL + K E+ E V Y ++ P+ +   G   
Sbjct: 4  VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d2ce7a1	193	Cell division protein FtsH, C-terminal domain {The	100.0
d2di4a1	202	Cell division protein FtsH, C-terminal domain {Aqu	99.97
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.83
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.75
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.45
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.61

>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.7e-33  Score=220.04  Aligned_cols=144  Identities=33%  Similarity=0.562  Sum_probs=114.6

Q ss_pred             HHHHHHHHHH-HHHhcCc-hh----------hccCCc-eEccc-ccccCCHHHHHHHHHHHhHHHHHHHHHhCccccCcc
Q psy13368         36 REAKVEVMEF-VDYLKRP-EY----------YQNLGA-KYTPS-EQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQ  101 (182)
Q Consensus        36 ~~a~~El~~~-V~~l~~P-~~----------~~alG~-~~~Pk-d~ll~t~~~l~~~i~v~laGraAEei~fG~vstGa~  101 (182)
                      ..|+||+||+ |.|+..| ..          ..++|+ .+.|. +.+++||++++++|+|+|||||||++|||++|+|++
T Consensus         9 ~vA~HEAGHAlva~~l~~~~~i~~vsI~~r~~~~~g~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~g~~s~Ga~   88 (193)
T d2ce7a1           9 IIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAA   88 (193)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGH
T ss_pred             HHHHHHHHHHHHHHHcCCCCceeEEEEecCccCCCceeecCCccccccCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence            4599999995 5564322 11          234565 34564 677899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHhcCCCCccceeecCCCCCC-------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHH
Q psy13368        102 NDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDK  174 (182)
Q Consensus       102 ~Dl~~At~lA~~mV~~~Gms~~~G~~~~~~~~~~-------~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~~  174 (182)
                      +||++||.||+.||..||||+.+|++.|....+.       ....++|+.+...++++|+++|+++|++|+++|++|++.
T Consensus        89 ~Dl~~At~lA~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~~~~  168 (193)
T d2ce7a1          89 NDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQ  168 (193)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CcHHHHHHHHHHHHHhhCcCCCcCceeeccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999988664332       345578999999999999999999999999999999999


Q ss_pred             Hhhhh
Q psy13368        175 LTLSF  179 (182)
Q Consensus       175 le~l~  179 (182)
                      |++|+
T Consensus       169 l~~la  173 (193)
T d2ce7a1         169 LDNIV  173 (193)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=4.3e-31  Score=210.32  Aligned_cols=145  Identities=26%  Similarity=0.478  Sum_probs=114.9

Q ss_pred             HHHHHHHHHH-HHHhcCc-hh---------hccCCc-eEcc-cccccCCHHHHHHHHHHHhHHHHHHHHHhCc--cccCc
Q psy13368         36 REAKVEVMEF-VDYLKRP-EY---------YQNLGA-KYTP-SEQKLYNKEELFDRMCMALGGRAAEAIVFNR--ITSGA  100 (182)
Q Consensus        36 ~~a~~El~~~-V~~l~~P-~~---------~~alG~-~~~P-kd~ll~t~~~l~~~i~v~laGraAEei~fG~--vstGa  100 (182)
                      ..|+||+||+ |.|+..+ ..         ..++|. ++.| .+..++||++|+++|+|+|||||||++|||+  +|+|+
T Consensus         9 ~vA~HEAGHAvva~~l~~~~~v~~vtI~prg~~~g~~~~~~~~~~~~~t~~~l~~~i~v~LgGraAE~i~~g~~~~~~g~   88 (202)
T d2di4a1           9 KIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGA   88 (202)
T ss_dssp             HHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHHHHHcCCCCceeEEEEecCCccccccccCcccccchhhHHHHHHHHHHHHhhhhcceeeecCcccccCc
Confidence            3499999995 5665432 11         124443 3345 5778999999999999999999999999994  89999


Q ss_pred             cchHHHHHHHHHHHHHhcCCCCccceeecCCCCCC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHH
Q psy13368        101 QNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNR-----QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL  175 (182)
Q Consensus       101 ~~Dl~~At~lA~~mV~~~Gms~~~G~~~~~~~~~~-----~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~~l  175 (182)
                      ++|+++||.+|+.||++||||+.+|++++......     ....++|+++...+|+||+++|+++|++|++||++|++.|
T Consensus        89 ~~dl~~At~~A~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~~~~l  168 (202)
T d2di4a1          89 ENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPL  168 (202)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             cchHHHHHHHHHHHHHhhCcccccchhhhcccccchhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999988654332     3456789999999999999999999999999999999999


Q ss_pred             hhhhc
Q psy13368        176 TLSFL  180 (182)
Q Consensus       176 e~l~~  180 (182)
                      ++|+.
T Consensus       169 ~~la~  173 (202)
T d2di4a1         169 KAVVK  173 (202)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98863

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=4.3e-06  Score=66.99  Aligned_cols=48  Identities=42%  Similarity=0.637  Sum_probs=37.1

Q ss_pred             CCCCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC
Q psy13368         22 GGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY   70 (182)
Q Consensus        22 ~~~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~   70 (182)
                      .+.++|||+||+|++.+|.++.++|+|+++|..++.+|..+ |++.+|+
T Consensus         4 ~~~~~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~-~~~iLL~   51 (256)
T d1lv7a_           4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKI-PKGVLMV   51 (256)
T ss_dssp             ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CC-CCEEEEE
T ss_pred             CCCCCCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCC-CCeEEee
Confidence            35889999999999999999999999999999999888763 5565554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.75  E-value=9.2e-06  Score=64.58  Aligned_cols=55  Identities=36%  Similarity=0.575  Sum_probs=45.2

Q ss_pred             CCCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC----CHHHHHHH
Q psy13368         23 GGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY----NKEELFDR   78 (182)
Q Consensus        23 ~~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~   78 (182)
                      +-|+++|+||+|++.+|.++.++|.++++|..++.+|..+ |.+.+++    |.++++.+
T Consensus         2 ~~p~~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~-~~giLl~GppGtGKT~la~   60 (247)
T d1ixza_           2 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI-PKGVLLVGPPGVGKTHLAR   60 (247)
T ss_dssp             CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCC-CSEEEEECCTTSSHHHHHH
T ss_pred             CCCCCcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCC-CceEEEecCCCCChhHHHH
Confidence            4689999999999999999999999999999999999763 6676665    44444443

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=3e-05  Score=61.59  Aligned_cols=51  Identities=31%  Similarity=0.622  Sum_probs=41.9

Q ss_pred             cccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHH
Q psy13368         27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDR   78 (182)
Q Consensus        27 ~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~   78 (182)
                      |+|+||+|++.+|.++.++|.+ |++|+.+..+|..+ |++.+|+    |.++++.+
T Consensus         1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~-~~giLL~GppGtGKT~l~~   56 (258)
T d1e32a2           1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-PRGILLYGPPGTGKTLIAR   56 (258)
T ss_dssp             CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCC-CCEEEEECCTTSSHHHHHH
T ss_pred             CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCC-CceeEEecCCCCCchHHHH
Confidence            6899999999999999998877 99999999999874 7777776    44444443

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.0002  Score=56.89  Aligned_cols=45  Identities=27%  Similarity=0.576  Sum_probs=38.4

Q ss_pred             CCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC
Q psy13368         25 RGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY   70 (182)
Q Consensus        25 ~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~   70 (182)
                      |.++|+||+|++.+|+++.+.|.+ +++|..+..+|..+ |.+.+|+
T Consensus         2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~-~~giLL~   47 (265)
T d1r7ra3           2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP-SKGVLFY   47 (265)
T ss_dssp             CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCC-CCEEEEB
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCC-CCeEEEE
Confidence            689999999999999999998765 89999999888763 6666665