Psyllid ID: psy13403

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDFKEKYS
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccHcHccHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHcccccHHHHHHHHHHccccccHHHHHHHcccccccEEEEcHHHHHHHcc
Coil and Loop (DISEMBL)
MAQAHAKMHlrehvsedDVNMAIRMMLESFVDTQKYSVMKQMKqvtgslpiTIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDFKEKYS
Flexible Loop (DISEMBL)
maqahakmhlrehvseddVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYILRQMTLDQLMYIRGVHGVVIDTVEihekdfkekys
Low Complexity Region (SEG)
MAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDFKEKYS
Disordered region (IsUnstruct)
*******************NMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYILRQMTLDQLMYIRGVHGVVIDTVEIH*********
Disordered Region (DISOPRED)
MAQAHAKMHLREHVSEDDV*MAIRMMLESFVD******************ITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESF**************************TELLYYILRQMT*********************KDTTELLYYILRQMTLDQLMYI**********VEIHEKDFKE***
Disordered Region (DISEMBL)
***********EHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDFKEKYS
Disordered Region (DISPRO)
**QAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDFKEKYS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDFKEKYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
P49735	887	DNA replication licensing	yes	N/A	0.517	0.113	0.683	3e-36
P49736	904	DNA replication licensing	yes	N/A	0.512	0.110	0.61	1e-33
P55861	886	DNA replication licensing	N/A	N/A	0.625	0.137	0.443	1e-33
P97310	904	DNA replication licensing	yes	N/A	0.687	0.148	0.464	1e-33
Q6DIH3	884	DNA replication licensing	yes	N/A	0.497	0.109	0.618	2e-33
P40377	830	DNA replication licensing	yes	N/A	0.502	0.118	0.404	2e-14
P29469	868	DNA replication licensing	yes	N/A	0.4	0.089	0.435	2e-13
D3ZVK1	830	DNA helicase MCM8 OS=Ratt	no	N/A	0.302	0.071	0.372	2e-05
Q0V9Q6	843	DNA helicase MCM8 OS=Xeno	no	N/A	0.338	0.078	0.324	2e-05
Q9CWV1	833	DNA helicase MCM8 OS=Mus	no	N/A	0.302	0.070	0.372	2e-05

>sp|P49735|MCM2_DROME DNA replication licensing factor Mcm2 OS=Drosophila melanogaster GN=Mcm2 PE=1 SV=1

 Score =  151 bits (381), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/101 (68%), Positives = 90/101 (89%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           Y+ ++Q    TGSLPIT+RHIES+IRM++AHA+MHLRE+V E DV+MAIRMMLESF++ Q
Sbjct: 724 YAQLRQESFATGSLPITVRHIESVIRMSEAHARMHLRENVMEADVSMAIRMMLESFIEAQ 783

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHI 136
           K+SVMK+M+ TFQKYLSF+KD +ELL++ILRQ+TLDQL +I
Sbjct: 784 KFSVMKKMRSTFQKYLSFQKDHSELLFFILRQLTLDQLAYI 824

Acts as component of the Mcm2-7 complex (Mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the Mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for DNA replication and cell proliferation.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|P49736|MCM2_HUMAN DNA replication licensing factor MCM2 OS=Homo sapiens GN=MCM2 PE=1 SV=4

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 86/100 (86%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           YS +++    TGS+PIT+RHIESMIRMA+AHA++HLR++V EDDVNMAIR+MLESF+DTQ
Sbjct: 747 YSDLRKESMATGSIPITVRHIESMIRMAEAHARIHLRDYVIEDDVNMAIRVMLESFIDTQ 806

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIH 135
           K+SVM+ M++TF +YLSF++D  ELL +IL+Q+  +Q+ +
Sbjct: 807 KFSVMRSMRKTFARYLSFRRDNNELLLFILKQLVAEQVTY 846

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for the entry in S phase and for cell division.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P55861|MCM2_XENLA DNA replication licensing factor mcm2 OS=Xenopus laevis GN=mcm2 PE=1 SV=2

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 99/158 (62%), Gaps = 36/158 (22%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           YS +++    TGS+PIT+RHIESMIRMA+AHA+MHLR++V EDDVNMAIR+MLESF+DTQ
Sbjct: 729 YSDLRKESMATGSIPITVRHIESMIRMAEAHARMHLRDYVVEDDVNMAIRVMLESFIDTQ 788

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTE 155
           K+SVM+ M++TF +YL+F++D  ELL ++L+Q+  +Q+                      
Sbjct: 789 KFSVMRSMRKTFARYLAFRRDNNELLLFVLKQLIAEQVT--------------------- 827

Query: 156 LLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDFKEK 193
                          Y R  +G   DT+E+ EKD  +K
Sbjct: 828 ---------------YQRNRYGAQQDTIEVPEKDLVDK 850

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for the entry in S phase and for cell division.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P97310|MCM2_MOUSE DNA replication licensing factor MCM2 OS=Mus musculus GN=Mcm2 PE=1 SV=3

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/153 (46%), Positives = 107/153 (69%), Gaps = 19/153 (12%)

Query: 5   HAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQ 64
           +AK  +R  +++ D +   RM          YS +++    TGS+PIT+RHIESMIRMA+
Sbjct: 726 YAKERVRPKLNQMDQDKVARM----------YSDLRKESMATGSIPITVRHIESMIRMAE 775

Query: 65  AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYI 124
           AHA+MHLR++V EDDVNMAIR+M+ESF+DTQK+SVM+ M++TF +YLSF++D  +LL +I
Sbjct: 776 AHARMHLRDYVMEDDVNMAIRVMMESFIDTQKFSVMRSMRKTFARYLSFRRDNNDLLLFI 835

Query: 125 LRQMTLDQLIHIPFVSQTFQKY-LSFKKDTTEL 156
           L+Q+  +Q+        T+Q+     ++DT E+
Sbjct: 836 LKQLVAEQV--------TYQRNRFGAQQDTIEI 860

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for the entry in S phase and for cell division.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q6DIH3|MCM2_XENTR DNA replication licensing factor mcm2 OS=Xenopus tropicalis GN=mcm2 PE=2 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 84/97 (86%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           YS +++    TGS+PIT+RHIESMIRMA+AHA+MHLR++V EDDVNMAIR+MLESF+DTQ
Sbjct: 727 YSDLRKESMATGSIPITVRHIESMIRMAEAHARMHLRDYVVEDDVNMAIRVMLESFIDTQ 786

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQ 132
           K+SVM+ M++TF +YL+F++D  ELL ++L+Q+  +Q
Sbjct: 787 KFSVMRSMRKTFARYLAFRRDNNELLLFVLKQLVAEQ 823

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P40377|MCM2_SCHPO DNA replication licensing factor mcm2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mcm2 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 13  HVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLR 72
           H + + V   ++ M E  + ++ YS M++    TGS PIT+RH+ES IR+++A AKM L 
Sbjct: 732 HFAREKVFPRLQQMDEEKI-SRLYSDMRRESLATGSYPITVRHLESAIRLSEAFAKMQLS 790

Query: 73  EHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYL 111
           E V    ++ AI+++++SFV+ QK SV + + +TF KYL
Sbjct: 791 EFVRPSHIDKAIQVIIDSFVNAQKMSVKRSLSRTFAKYL 829

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity (By similarity). Plays an important role in DNA replication.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P29469|MCM2_YEAST DNA replication licensing factor MCM2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCM2 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 59/78 (75%)

Query: 33  TQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFV 92
           ++ Y+ +++    TGS PIT+RH+ES++R+A++ AKM L E VS  D++ AI+++++SFV
Sbjct: 787 SRVYADLRRESISTGSFPITVRHLESILRIAESFAKMRLSEFVSSYDLDRAIKVVVDSFV 846

Query: 93  DTQKYSVMKQMKQTFQKY 110
           D QK SV +Q++++F  Y
Sbjct: 847 DAQKVSVRRQLRRSFAIY 864

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity; specifically the MCM2-MCM5 association is proposed to be reversible and to mediate a open ring conformation which may facilitate DNA loading. Once loaded onto DNA, double hexamers can slide on dsDNA in the absence of ATPase activity. Necessary for cell growth.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|D3ZVK1|MCM8_RAT DNA helicase MCM8 OS=Rattus norvegicus GN=Mcm8 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDT 94
           Y  +++  Q  GS PIT R +ES+IR+ +A A++ LRE  +++D    I +M  S + T
Sbjct: 683 YLELRKQSQRVGSSPITTRQLESLIRLTEARARLELREEATKEDAEDIIEIMKHSMLGT 741

Component of the MCM8-MCM9 complex, a complex involved in homologous recombination repair following DNA interstrand cross-links and plays a key role during gametogenesis. The MCM8-MCM9 complex probably acts as a hexameric helicase downstream of the Fanconi anemia proteins BRCA2 and RAD51 and is required to process aberrant forks into homologous recombination substrates and to orchestrate homologous recombination with resection, fork stabilization and fork restart. May also play a non-essential for DNA replication: may be involved in the activation of the prereplicative complex (pre-RC) during G(1) phase by recruiting CDC6 to the origin recognition complex (ORC). Binds chromatin throughout the cell cycle.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q0V9Q6|MCM8_XENTR DNA helicase MCM8 OS=Xenopus tropicalis GN=mcm8 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 8/74 (10%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           Y  +++  Q   S PIT R +ES+IR+ +A A++ LRE  ++DD    +++M        
Sbjct: 684 YLELRKQNQGIDSTPITTRQLESLIRLTEARARLELREKATKDDAEEVVQIM-------- 735

Query: 96  KYSVMKQMKQTFQK 109
           KYS++      F K
Sbjct: 736 KYSLLGTFSDEFGK 749

Component of the MCM8-MCM9 complex, a complex involved in homologous recombination repair following DNA interstrand cross-links and plays a key role during gametogenesis. The MCM8-MCM9 complex probably acts as a hexameric helicase required to process aberrant forks into homologous recombination substrates and to orchestrate homologous recombination with resection, fork stabilization and fork restart. In eggs, required for elongation during DNA replication by facilitating the recruitment of rpa2/rpa34 and stimulating the processivity of DNA polymerases at replication foci. Probably not required for DNA replication in other cells.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9CWV1|MCM8_MOUSE DNA helicase MCM8 OS=Mus musculus GN=Mcm8 PE=1 SV=3

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDT 94
           Y  +++  Q  GS PIT R +ES+IR+ +A A++ LRE  + +D    I +M  S + T
Sbjct: 686 YLELRKQSQRVGSSPITTRQLESLIRLTEARARLELREEATREDAEDIIEIMKHSMLGT 744

May have a role in the control of cell proliferation. Appears to be involved in the activation of the prereplicative complex (pre-RC) during G(1) phase by recruiting CDC6 to the origin recognition complex (ORC). Binds chromatin throughout the cell cycle.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
193712527	888	PREDICTED: DNA replication licensing fac	0.625	0.137	0.569	4e-44
350422790	924	PREDICTED: DNA replication licensing fac	0.625	0.132	0.531	2e-37
340712841	877	PREDICTED: DNA replication licensing fac	0.625	0.139	0.531	2e-37
332017139	893	DNA replication licensing factor Mcm2 [A	0.610	0.133	0.561	3e-37
328779765	875	PREDICTED: DNA replication licensing fac	0.569	0.126	0.663	3e-37
380011223	875	PREDICTED: DNA replication licensing fac	0.569	0.126	0.663	3e-37
307211082	862	DNA replication licensing factor Mcm2 [H	0.625	0.141	0.550	5e-37
383865959	1018	PREDICTED: DNA replication licensing fac	0.610	0.116	0.554	6e-37
307178163	1417	DNA replication licensing factor Mcm2 [C	0.625	0.086	0.550	6e-37
322784925	800	hypothetical protein SINV_03087 [Solenop	0.702	0.171	0.555	1e-36

>gi|193712527|ref|XP_001944886.1| PREDICTED: DNA replication licensing factor Mcm2-like [Acyrthosiphon pisum]

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 111/158 (70%), Gaps = 36/158 (22%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           YS ++Q   +TGSLPIT+RHIESMIRMA+A+AKMHLR++V EDDVNMAIR+MLESF++TQ
Sbjct: 727 YSQLRQESMMTGSLPITVRHIESMIRMAEANAKMHLRDYVQEDDVNMAIRIMLESFIETQ 786

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTE 155
           KYS+MK M++TFQKYLSFKKDTTELLY+IL QM  D                        
Sbjct: 787 KYSIMKTMRKTFQKYLSFKKDTTELLYFILHQMATD------------------------ 822

Query: 156 LLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDFKEK 193
                       QL YIRG+HGV ++T+EIHEKDFK++
Sbjct: 823 ------------QLAYIRGIHGVTVNTIEIHEKDFKDR 848

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422790|ref|XP_003493283.1| PREDICTED: DNA replication licensing factor Mcm2-like [Bombus impatiens]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 102/158 (64%), Gaps = 36/158 (22%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           YS ++Q    TGSLPIT+RHIES+IRMA+A AKMHLR+HV E D+N+AIRMML+SFVDTQ
Sbjct: 761 YSQLRQESLATGSLPITVRHIESIIRMAEASAKMHLRDHVQEGDINLAIRMMLDSFVDTQ 820

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTE 155
           KYSVMK M+QTFQKYLS+ KD +ELLYYILRQ+TLD L         FQK          
Sbjct: 821 KYSVMKSMRQTFQKYLSYNKDHSELLYYILRQLTLDTL--------AFQK---------- 862

Query: 156 LLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDFKEK 193
                              +HG  I T+E+ EKD  ++
Sbjct: 863 ------------------AIHGNRITTIEVSEKDLLDR 882

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712841|ref|XP_003394962.1| PREDICTED: DNA replication licensing factor Mcm2-like [Bombus terrestris]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 102/158 (64%), Gaps = 36/158 (22%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           YS ++Q    TGSLPIT+RHIES+IRMA+A AKMHLR+HV E D+N+AIRMML+SFVDTQ
Sbjct: 714 YSQLRQESLATGSLPITVRHIESIIRMAEASAKMHLRDHVQEGDINLAIRMMLDSFVDTQ 773

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTE 155
           KYSVMK M+QTFQKYLS+ KD +ELLYYILRQ+TLD L         FQK          
Sbjct: 774 KYSVMKSMRQTFQKYLSYNKDHSELLYYILRQLTLDTL--------AFQK---------- 815

Query: 156 LLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDFKEK 193
                              +HG  I T+E+ EKD  ++
Sbjct: 816 ------------------AIHGNRITTIEVSEKDLLDR 835

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017139|gb|EGI57938.1| DNA replication licensing factor Mcm2 [Acromyrmex echinatior]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 101/155 (65%), Gaps = 36/155 (23%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           YS ++Q    TGSLPIT+RHIES+IRMA+A AKMHLR+HV E D+N+AIRM+L+SFVDTQ
Sbjct: 730 YSQLRQESLATGSLPITVRHIESIIRMAEASAKMHLRDHVQESDMNLAIRMVLDSFVDTQ 789

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTE 155
           KYSVMK M+QTFQKYLS+KKD +ELLYYILRQ+TLD L         FQK L        
Sbjct: 790 KYSVMKSMRQTFQKYLSYKKDHSELLYYILRQITLDTL--------AFQKAL-------- 833

Query: 156 LLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDF 190
                               HG  I TVEI EKD 
Sbjct: 834 --------------------HGGRITTVEISEKDL 848

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779765|ref|XP_395109.3| PREDICTED: DNA replication licensing factor Mcm2-like [Apis mellifera]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/119 (66%), Positives = 94/119 (78%), Gaps = 8/119 (6%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           YS ++Q    TGSLPIT+RHIES+IRMA+A AKMHLR+HV E D+N+AIRMML+SFVDTQ
Sbjct: 712 YSQLRQESLATGSLPITVRHIESIIRMAEASAKMHLRDHVQETDINLAIRMMLDSFVDTQ 771

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTT 154
           KYSVMK M+QTFQKYLSF+K+ TELLYYILRQ+TLD L         FQK +   + TT
Sbjct: 772 KYSVMKSMRQTFQKYLSFQKNHTELLYYILRQLTLDTL--------AFQKAIRGNRITT 822

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011223|ref|XP_003689710.1| PREDICTED: DNA replication licensing factor Mcm2-like [Apis florea]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/119 (66%), Positives = 94/119 (78%), Gaps = 8/119 (6%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           YS ++Q    TGSLPIT+RHIES+IRMA+A AKMHLR+HV E D+N+AIRMML+SFVDTQ
Sbjct: 712 YSQLRQESLATGSLPITVRHIESIIRMAEASAKMHLRDHVQETDINLAIRMMLDSFVDTQ 771

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTT 154
           KYSVMK M+QTFQKYLSF+K+ TELLYYILRQ+TLD L         FQK +   + TT
Sbjct: 772 KYSVMKSMRQTFQKYLSFQKNHTELLYYILRQLTLDTL--------AFQKAIRGNRITT 822

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211082|gb|EFN87325.1| DNA replication licensing factor Mcm2 [Harpegnathos saltator]

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 103/158 (65%), Gaps = 36/158 (22%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           YS ++Q    TGSLPIT+RHIES+IRMA+A AKMHLR+HV E D+N+AIRM+L+SFV+TQ
Sbjct: 699 YSQLRQESLATGSLPITVRHIESIIRMAEASAKMHLRDHVQESDMNLAIRMILDSFVETQ 758

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTE 155
           KYSVMK M+QTFQKYLS+KKD +ELLYYILRQ+TLD L         FQK L        
Sbjct: 759 KYSVMKSMRQTFQKYLSYKKDHSELLYYILRQITLDTL--------AFQKAL-------- 802

Query: 156 LLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDFKEK 193
                               HG  I TVEI EKD  E+
Sbjct: 803 --------------------HGGRIATVEISEKDLLER 820

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865959|ref|XP_003708439.1| PREDICTED: DNA replication licensing factor Mcm2-like [Megachile rotundata]

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 86/155 (55%), Positives = 101/155 (65%), Gaps = 36/155 (23%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           YS ++Q    TGSLPIT+RHIES+IRMA+A AKMHLR+HV E DVN+AIRMML+SFV+TQ
Sbjct: 855 YSQLRQESLATGSLPITVRHIESIIRMAEASAKMHLRDHVQESDVNLAIRMMLDSFVETQ 914

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTE 155
           KYSVM+ M+QTFQKYLS++KD +ELLYYILRQ+TLD L         FQK L        
Sbjct: 915 KYSVMRSMRQTFQKYLSYQKDHSELLYYILRQITLDTL--------AFQKAL-------- 958

Query: 156 LLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDF 190
                               HG  I TVEI EKD 
Sbjct: 959 --------------------HGGRITTVEISEKDL 973

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178163|gb|EFN66971.1| DNA replication licensing factor Mcm2 [Camponotus floridanus]

 Score =  159 bits (401), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 103/158 (65%), Gaps = 36/158 (22%)

Query: 36   YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
            YS ++Q    TGSLPIT+RHIES+IRMA+A AKMHLR+HV E D+N+AIR++L+SFVDTQ
Sbjct: 1254 YSQLRQESLATGSLPITVRHIESIIRMAEASAKMHLRDHVQESDMNLAIRIILDSFVDTQ 1313

Query: 96   KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTE 155
            KYSVMK M+QTFQKYLS+KKD +ELLYYILRQ+TLD L         FQK L        
Sbjct: 1314 KYSVMKSMRQTFQKYLSYKKDHSELLYYILRQITLDTL--------AFQKAL-------- 1357

Query: 156  LLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKDFKEK 193
                                HG  I TVEI EKD  E+
Sbjct: 1358 --------------------HGGRIMTVEISEKDLLER 1375

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784925|gb|EFZ11696.1| hypothetical protein SINV_03087 [Solenopsis invicta]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 110/153 (71%), Gaps = 16/153 (10%)

Query: 36  YSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95
           YS ++Q    TGSLPIT+RHIES+IRMA+A AKMHLR+HV E D+N+AIR++L+SFVDTQ
Sbjct: 653 YSQLRQESLATGSLPITVRHIESIIRMAEASAKMHLRDHVQESDMNLAIRIVLDSFVDTQ 712

Query: 96  KYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTT- 154
           KYSVMK M+QTFQKYLS+KK+  ELLYYILRQ+TLD L         FQK L   + TT 
Sbjct: 713 KYSVMKSMRQTFQKYLSYKKEHNELLYYILRQITLDTL--------AFQKALHGGRITTV 764

Query: 155 -----ELLYYILRQMTLDQLMY--IRGVHGVVI 180
                +LL  +++ +TL+ +    IRG +  +I
Sbjct: 765 EISEKDLLERVMQTITLNSIRSKIIRGFNKYII 797

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
FB|FBgn0014861	887	Mcm2 "Minichromosome maintenan	0.646	0.142	0.558	6.8e-33
UNIPROTKB|F1NB20	888	MCM2 "Uncharacterized protein"	0.641	0.140	0.523	1.7e-31
UNIPROTKB|F1SPF3	903	MCM2 "Uncharacterized protein"	0.641	0.138	0.523	6e-31
UNIPROTKB|F1N506	897	F1N506 "Uncharacterized protei	0.641	0.139	0.531	9.7e-31
UNIPROTKB|Q6DIH3	884	mcm2 "DNA replication licensin	0.625	0.138	0.512	2e-30
RGD|1305577	907	Mcm2 "minichromosome maintenan	0.641	0.137	0.507	2.1e-30
UNIPROTKB|H0Y8E6	836	MCM2 "DNA replication licensin	0.641	0.149	0.507	2.2e-30
UNIPROTKB|P49736	904	MCM2 "DNA replication licensin	0.641	0.138	0.507	2.7e-30
ZFIN|ZDB-GENE-020419-24	889	mcm2 "MCM2 minichromosome main	0.630	0.138	0.523	3.3e-30
MGI|MGI:105380	904	Mcm2 "minichromosome maintenan	0.641	0.138	0.5	3.4e-30

FB|FBgn0014861 Mcm2 "Minichromosome maintenance 2" [Drosophila melanogaster (taxid:7227)]

 Score = 369 (135.0 bits), Expect = 6.8e-33, P = 6.8e-33
 Identities = 72/129 (55%), Positives = 105/129 (81%)

Query:    10 LREHV--SEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHA 67
             LR+++  +++++   +  + E  +  + Y+ ++Q    TGSLPIT+RHIES+IRM++AHA
Sbjct:   697 LRQYIVYAKENIRPKLTNIDEDKI-AKMYAQLRQESFATGSLPITVRHIESVIRMSEAHA 755

Query:    68 KMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQ 127
             +MHLRE+V E DV+MAIRMMLESF++ QK+SVMK+M+ TFQKYLSF+KD +ELL++ILRQ
Sbjct:   756 RMHLRENVMEADVSMAIRMMLESFIEAQKFSVMKKMRSTFQKYLSFQKDHSELLFFILRQ 815

Query:   128 MTLDQLIHI 136
             +TLDQL +I
Sbjct:   816 LTLDQLAYI 824

GO:0006267 "pre-replicative complex assembly" evidence=ISS;NAS

GO:0003682 "chromatin binding" evidence=ISS;NAS

GO:0005656 "pre-replicative complex" evidence=ISS;NAS

GO:0008283 "cell proliferation" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0003677 "DNA binding" evidence=IEA;NAS

GO:0006260 "DNA replication" evidence=NAS;TAS

GO:0030261 "chromosome condensation" evidence=IMP

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043138 "3'-5' DNA helicase activity" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|F1NB20 MCM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 356 (130.4 bits), Expect = 1.7e-31, P = 1.7e-31
 Identities = 67/128 (52%), Positives = 102/128 (79%)

Query:    10 LREHV--SEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHA 67
             LR+++  +++ V+  +  M +  V  + Y+ +++    TGS+PIT+RHIESMIRMA+AHA
Sbjct:   704 LRKYIVYAKEKVHPKLNQMDQDKV-ARMYTDLRKESMATGSIPITVRHIESMIRMAEAHA 762

Query:    68 KMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQ 127
             +MHLR++V EDDVNMAIR+MLESF+DTQK+SVM+ M++TF +YLSFK+D  ELL +IL+Q
Sbjct:   763 RMHLRDYVVEDDVNMAIRVMLESFIDTQKFSVMRSMRKTFSRYLSFKRDNNELLLFILKQ 822

Query:   128 MTLDQLIH 135
             +  +Q+++
Sbjct:   823 LVAEQVMY 830

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0003688 "DNA replication origin binding" evidence=IEA

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

UNIPROTKB|F1SPF3 MCM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 351 (128.6 bits), Expect = 6.0e-31, P = 6.0e-31
 Identities = 67/128 (52%), Positives = 101/128 (78%)

Query:    10 LREHV--SEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHA 67
             LR+++  +++ V+  +  M +  V  + YS +++    TGS+PIT+RHIESMIRMA+AHA
Sbjct:   719 LRKYIIYAKEKVHPKLNQMDQDKV-AKMYSDLRKESMATGSIPITVRHIESMIRMAEAHA 777

Query:    68 KMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQ 127
             ++HLR++V EDDVNMAIR+MLESFVDTQK+SVM+ M++TF +YLSF++D  ELL +IL+Q
Sbjct:   778 RIHLRDYVMEDDVNMAIRVMLESFVDTQKFSVMRSMRKTFARYLSFRRDNNELLLFILKQ 837

Query:   128 MTLDQLIH 135
             +  +Q+ +
Sbjct:   838 LVAEQVAY 845

GO:0042555 "MCM complex" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA

GO:0003688 "DNA replication origin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

UNIPROTKB|F1N506 F1N506 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 349 (127.9 bits), Expect = 9.7e-31, P = 9.7e-31
 Identities = 68/128 (53%), Positives = 100/128 (78%)

Query:    10 LREHV--SEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHA 67
             LR+++  +++ V+  +  M +  V  + YS +++    TGS+PIT+RHIESMIRMA+AHA
Sbjct:   713 LRKYIIYAKEKVHPKLNQMDQDKV-AKMYSDLRKESMATGSIPITVRHIESMIRMAEAHA 771

Query:    68 KMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQ 127
             +MHLR++V EDDVNMAIR+MLESFVDTQK+SVM+ M++TF +YLSF +D  ELL +IL+Q
Sbjct:   772 RMHLRDYVMEDDVNMAIRVMLESFVDTQKFSVMRGMRKTFARYLSFGRDNNELLLFILKQ 831

Query:   128 MTLDQLIH 135
             +  +Q+ +
Sbjct:   832 LVAEQVTY 839

GO:0042555 "MCM complex" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA

GO:0003688 "DNA replication origin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

UNIPROTKB|Q6DIH3 mcm2 "DNA replication licensing factor mcm2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 346 (126.9 bits), Expect = 2.0e-30, P = 2.0e-30
 Identities = 64/125 (51%), Positives = 99/125 (79%)

Query:    10 LREHV--SEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHA 67
             L++++  S++ ++  +  M +  V  + YS +++    TGS+PIT+RHIESMIRMA+AHA
Sbjct:   700 LKKYIMYSKEKIHPKLNQMDQDKV-AKMYSDLRKESMATGSIPITVRHIESMIRMAEAHA 758

Query:    68 KMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQ 127
             +MHLR++V EDDVNMAIR+MLESF+DTQK+SVM+ M++TF +YL+F++D  ELL ++L+Q
Sbjct:   759 RMHLRDYVVEDDVNMAIRVMLESFIDTQKFSVMRSMRKTFARYLAFRRDNNELLLFVLKQ 818

Query:   128 MTLDQ 132
             +  +Q
Sbjct:   819 LVAEQ 823

GO:0000785 "chromatin" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006268 "DNA unwinding involved in replication" evidence=ISS

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=ISS

GO:0042555 "MCM complex" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

RGD|1305577 Mcm2 "minichromosome maintenance complex component 2" [Rattus norvegicus (taxid:10116)]

 Score = 346 (126.9 bits), Expect = 2.1e-30, P = 2.1e-30
 Identities = 65/128 (50%), Positives = 100/128 (78%)

Query:    10 LREHV--SEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHA 67
             L++++  +++ V   +  M +  V  + YS +++    TGS+PIT+RHIESMIRMA+AHA
Sbjct:   723 LKKYIIYAKERVRPKLNQMDQDKV-ARMYSDLRKESMATGSIPITVRHIESMIRMAEAHA 781

Query:    68 KMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQ 127
             +MHLR++V EDDVNMAIR+MLESF+DTQK+SVM+ M++TF +YLSF++D  +LL +IL+Q
Sbjct:   782 RMHLRDYVMEDDVNMAIRVMLESFIDTQKFSVMRSMRKTFARYLSFRRDNNDLLLFILKQ 841

Query:   128 MTLDQLIH 135
             +  +Q+ +
Sbjct:   842 LVAEQVTY 849

GO:0000785 "chromatin" evidence=IEA;ISO

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0003688 "DNA replication origin binding" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA;ISO

GO:0006268 "DNA unwinding involved in replication" evidence=IEA;ISO

GO:0006270 "DNA replication initiation" evidence=IEA;ISO

GO:0006334 "nucleosome assembly" evidence=IEA;ISO

GO:0042393 "histone binding" evidence=IEA;ISO

GO:0042555 "MCM complex" evidence=IEA;ISO

GO:0071353 "cellular response to interleukin-4" evidence=ISO

UNIPROTKB|H0Y8E6 MCM2 "DNA replication licensing factor MCM2" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 2.2e-30, P = 2.2e-30
 Identities = 65/128 (50%), Positives = 101/128 (78%)

Query:    10 LREHV--SEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHA 67
             L++++  +++ V+  +  M +  V  + YS +++    TGS+PIT+RHIESMIRMA+AHA
Sbjct:   652 LKKYIIYAKERVHPKLNQMDQDKV-AKMYSDLRKESMATGSIPITVRHIESMIRMAEAHA 710

Query:    68 KMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQ 127
             ++HLR++V EDDVNMAIR+MLESF+DTQK+SVM+ M++TF +YLSF++D  ELL +IL+Q
Sbjct:   711 RIHLRDYVIEDDVNMAIRVMLESFIDTQKFSVMRSMRKTFARYLSFRRDNNELLLFILKQ 770

Query:   128 MTLDQLIH 135
             +  +Q+ +
Sbjct:   771 LVAEQVTY 778

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P49736 MCM2 "DNA replication licensing factor MCM2" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 2.7e-30, P = 2.7e-30
 Identities = 65/128 (50%), Positives = 101/128 (78%)

Query:    10 LREHV--SEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHA 67
             L++++  +++ V+  +  M +  V  + YS +++    TGS+PIT+RHIESMIRMA+AHA
Sbjct:   720 LKKYIIYAKERVHPKLNQMDQDKV-AKMYSDLRKESMATGSIPITVRHIESMIRMAEAHA 778

Query:    68 KMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQ 127
             ++HLR++V EDDVNMAIR+MLESF+DTQK+SVM+ M++TF +YLSF++D  ELL +IL+Q
Sbjct:   779 RIHLRDYVIEDDVNMAIRVMLESFIDTQKFSVMRSMRKTFARYLSFRRDNNELLLFILKQ 838

Query:   128 MTLDQLIH 135
             +  +Q+ +
Sbjct:   839 LVAEQVTY 846

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003688 "DNA replication origin binding" evidence=IEA

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042555 "MCM complex" evidence=IDA

GO:0006270 "DNA replication initiation" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0000785 "chromatin" evidence=IDA

GO:0003677 "DNA binding" evidence=TAS

GO:0007049 "cell cycle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

ZFIN|ZDB-GENE-020419-24 mcm2 "MCM2 minichromosome maintenance deficient 2, mitotin (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 344 (126.2 bits), Expect = 3.3e-30, P = 3.3e-30
 Identities = 66/126 (52%), Positives = 99/126 (78%)

Query:    10 LREHV--SEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHA 67
             LR+++  +++ V   +  M +  V  + YS +++    TGS+PIT+RHIESMIRMA+AHA
Sbjct:   705 LRKYIIYAKERVRPKLNQMDQDKV-ARIYSDLRKESMATGSIPITVRHIESMIRMAEAHA 763

Query:    68 KMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQ 127
             +MHLR++V EDDVNMAIR+MLESF+DTQK+SVM+ M++TF +YL+F++D  ELL +IL+Q
Sbjct:   764 RMHLRDYVLEDDVNMAIRVMLESFIDTQKFSVMRSMRKTFARYLAFRRDNNELLLFILKQ 823

Query:   128 MTLDQL 133
             +  +Q+
Sbjct:   824 LVSEQV 829

GO:0042555 "MCM complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0003682 "chromatin binding" evidence=IDA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:105380 Mcm2 "minichromosome maintenance deficient 2 mitotin (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 344 (126.2 bits), Expect = 3.4e-30, P = 3.4e-30
 Identities = 64/128 (50%), Positives = 100/128 (78%)

Query:    10 LREHV--SEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHA 67
             L++++  +++ V   +  M +  V  + YS +++    TGS+PIT+RHIESMIRMA+AHA
Sbjct:   720 LKKYIIYAKERVRPKLNQMDQDKV-ARMYSDLRKESMATGSIPITVRHIESMIRMAEAHA 778

Query:    68 KMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQ 127
             +MHLR++V EDDVNMAIR+M+ESF+DTQK+SVM+ M++TF +YLSF++D  +LL +IL+Q
Sbjct:   779 RMHLRDYVMEDDVNMAIRVMMESFIDTQKFSVMRSMRKTFARYLSFRRDNNDLLLFILKQ 838

Query:   128 MTLDQLIH 135
             +  +Q+ +
Sbjct:   839 LVAEQVTY 846

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000785 "chromatin" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0003688 "DNA replication origin binding" evidence=IDA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005664 "nuclear origin of replication recognition complex" evidence=IDA

GO:0006260 "DNA replication" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IDA

GO:0006270 "DNA replication initiation" evidence=ISO;TAS

GO:0006334 "nucleosome assembly" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0042393 "histone binding" evidence=IDA

GO:0042555 "MCM complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0071353 "cellular response to interleukin-4" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DIH3	MCM2_XENTR	3, ., 6, ., 4, ., 1, 2	0.6185	0.4974	0.1097	yes	N/A
P49736	MCM2_HUMAN	3, ., 6, ., 4, ., 1, 2	0.61	0.5128	0.1106	yes	N/A
P49735	MCM2_DROME	3, ., 6, ., 4, ., 1, 2	0.6831	0.5179	0.1138	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	195
pfam00493	327	pfam00493, MCM, MCM2/3/5 family	3e-18
smart00350	509	smart00350, MCM, minichromosome maintenance protei	3e-18
COG1241	682	COG1241, MCM2, Predicted ATPase involved in replic	2e-13
pfam00493	327	pfam00493, MCM, MCM2/3/5 family	8e-08
smart00350	509	smart00350, MCM, minichromosome maintenance protei	1e-07
COG1241	682	COG1241, MCM2, Predicted ATPase involved in replic	4e-05

>gnl|CDD|215947 pfam00493, MCM, MCM2/3/5 family

 Score = 80.3 bits (199), Expect = 3e-18
 Identities = 32/89 (35%), Positives = 58/89 (65%), Gaps = 9/89 (10%)

Query: 4   AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMA 63
           A+A+ +++  +S++    A   ++  +V+ +K S         GS+PIT+R +ES+IR++
Sbjct: 248 AYARENIKPKLSDE----AREKLVNWYVELRKESEGS-----RGSIPITVRQLESLIRLS 298

Query: 64  QAHAKMHLREHVSEDDVNMAIRMMLESFV 92
           +AHA++ L E V+E+DV  AIR++LES  
Sbjct: 299 EAHARLRLSEEVTEEDVEEAIRLILESLK 327

Length = 327

>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins

 Score = 81.2 bits (201), Expect = 3e-18
 Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 33  TQKYSVMKQM---KQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLE 89
            + Y  +++     +   S+PIT+R +ES+IR+++AHAKM L + V E DV  AIR++ E
Sbjct: 447 VKAYVDLRKEDSQTESRSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506

Query: 90  SFV 92
           S +
Sbjct: 507 SII 509

Length = 509

>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 21  MAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDV 80
            A   + + +V+ +K      + +   ++PIT R +ES+IR+A+AHAKM L + V E+DV
Sbjct: 529 EAREELEDYYVEMRK---KSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDV 585

Query: 81  NMAIRMMLES----FVDTQKYSVMKQMKQTFQKYLSFKKDTTEL 120
           + AIR++  S     VD +K  +   + +  +      K    L
Sbjct: 586 DEAIRLVDFSLKTVAVDPEKGKIDIDIIEPGKSKSKRDKIEKVL 629

Length = 682

>gnl|CDD|215947 pfam00493, MCM, MCM2/3/5 family

 Score = 50.6 bits (122), Expect = 8e-08
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 1   MAQAHAKMHLREHVSEDDVNMAIRMMLESFV 31
           +++AHA++ L E V+E+DV  AIR++LES  
Sbjct: 297 LSEAHARLRLSEEVTEEDVEEAIRLILESLK 327

Length = 327

>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 1   MAQAHAKMHLREHVSEDDVNMAIRMMLESFV 31
           +++AHAKM L + V E DV  AIR++ ES +
Sbjct: 479 LSEAHAKMRLSDVVEEADVEEAIRLLRESII 509

Length = 509

>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 18/105 (17%)

Query: 1   MAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRH----- 55
           +A+AHAKM L + V E+DV+ AIR++  S       +V  +  ++   +    +      
Sbjct: 567 LAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKT---VAVDPEKGKIDIDIIEPGKSKSKRD 623

Query: 56  --------IESMIRMAQAHAKMHLREH--VSEDDVNMAIRMMLES 90
                   I+ ++  ++   +  + E   +SE +V  A+  + + 
Sbjct: 624 KIEKVLDIIKELVERSEDPVEEIIEEAEGISEKEVEEALEKLKKK 668

Length = 682

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
KOG0477|consensus	854		99.96
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	99.84
KOG0480|consensus	764		99.81
COG1241	682	MCM2 Predicted ATPase involved in replication cont	99.8
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	99.71
KOG0481|consensus	729		99.7
KOG0482|consensus	721		99.65
smart00350	509	MCM minichromosome maintenance proteins.	99.63
KOG0479|consensus	818		99.5
KOG0478|consensus	804		99.39
KOG0477|consensus	854		97.9
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	96.77
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	93.86
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	93.85
COG1241	682	MCM2 Predicted ATPase involved in replication cont	92.26
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	91.64
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	91.33
PRK13531	498	regulatory ATPase RavA; Provisional	88.8
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	88.38
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	85.54
PRK09862	506	putative ATP-dependent protease; Provisional	84.05
PRK13765	637	ATP-dependent protease Lon; Provisional	82.79

>KOG0477|consensus

Probab=99.96  E-value=5.4e-30  Score=245.63  Aligned_cols=124  Identities=50%  Similarity=0.859  Sum_probs=118.5

Q ss_pred             hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHH
Q psy13403          4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMA   83 (195)
Q Consensus         4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~A   83 (195)
                      -|||..|+|.+.+-|.+..          +..|++||+++..+|++|||+||+|||||+||||||||||++|+++|++.|
T Consensus       684 ~yar~~v~PkL~q~d~~K~----------s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~A  753 (854)
T KOG0477|consen  684 IYAREKVRPKLNQMDMDKI----------SSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMA  753 (854)
T ss_pred             HHHHHhcccccccccHHHH----------HHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHH
Confidence            4899999999999988765          468999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHhhhhhHHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhhhhccchhhHHHHHHhhhccchhHHHHHHHHH
Q psy13403         84 IRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYILRQ  163 (195)
Q Consensus        84 I~L~~~S~i~~qk~s~~k~l~~~f~kY~~~~~d~~eli~~ilr~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~~L~~  163 (195)
                      |+++..||+++||+|++++|+++|.+|+...+|++++                                    |+++|||
T Consensus       754 I~v~ldSfi~aQk~Sv~rslr~tF~~y~~~~kd~nel------------------------------------llf~lkq  797 (854)
T KOG0477|consen  754 IRVMLDSFISAQKFSVMRSLRKTFARYLSFRKDNNEL------------------------------------LLFILKQ  797 (854)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchh------------------------------------hhHHHHH
Confidence            9999999999999999999999999999999999998                                    8999999


Q ss_pred             HHHHHHHHHH
Q psy13403        164 MTLDQLMYIR  173 (195)
Q Consensus       164 lv~d~~~~~~  173 (195)
                      ||++++.|.+
T Consensus       798 l~~~q~~~~~  807 (854)
T KOG0477|consen  798 LVAEQMKYQR  807 (854)
T ss_pred             HHHHHHHHhh
Confidence            9999999984

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=99.84  E-value=3.6e-21  Score=191.18  Aligned_cols=156  Identities=16%  Similarity=0.202  Sum_probs=109.7

Q ss_pred             hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhh------------------------hcCCCcccchhhHHHH
Q psy13403          4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMK------------------------QVTGSLPITIRHIESM   59 (195)
Q Consensus         4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~------------------------~~~~~~piTvR~LESl   59 (195)
                      +|||.+|+|.+|+++    .+.+.+      +|++||+..                        ...+++|||+||||||
T Consensus       707 ~YAR~~~~P~Ls~eA----~~~i~~------~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsL  776 (915)
T PTZ00111        707 KFSKLHCFPKLSDEA----KKVITR------EYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSI  776 (915)
T ss_pred             HHHhccCCCCCCHHH----HHHHHH------HHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHH
Confidence            799999999999994    455555      899999742                        1235799999999999


Q ss_pred             HHHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhhhhhHHHHHHHHHHHhh----hhccCChhHHHHHHHHHHhhhh---
Q psy13403         60 IRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKY----LSFKKDTTELLYYILRQMTLDQ---  132 (195)
Q Consensus        60 IRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~qk~s~~k~l~~~f~kY----~~~~~d~~eli~~ilr~i~~~~---  132 (195)
                      ||||||||||+|+++|+++||++||+||..|+.++.-.+-...+.  ++.-    ....++..+.+..+++++....   
T Consensus       777 IRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~sl~~~~~DpetG~iD--~d~~~~G~s~~~r~~~~~~~~~i~~~~~~~~~~  854 (915)
T PTZ00111        777 IRISVSLARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTTGKID--FDQLHQGITTNKMQQLNQMYEQVLSVLTRSSNQ  854 (915)
T ss_pred             HHHHHHHhhhcCcCcccHHHHHHHHHHHHHHHhhhcccccCCccc--ceeeccCCcHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999999999999999999999999999988653111000000  0000    0001122334555666665432   


Q ss_pred             -hhccchhhHHHHHHhhh--------ccchhHHHHHHHHHHHHHHHHH
Q psy13403        133 -LIHIPFVSQTFQKYLSF--------KKDTTELLYYILRQMTLDQLMY  171 (195)
Q Consensus       133 -~~~~~~~~~~~~~~l~~--------~~~~~~ll~~~L~~lv~d~~~~  171 (195)
                       ..++++.+|++++|-.+        .+-.++.+-++|+.|.++..+|
T Consensus       855 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~g~i~  902 (915)
T PTZ00111        855 DSNKSLDLNEVLSLCHKTFKDNRDHKDGEIYKLISEVLNKMVQEGTAV  902 (915)
T ss_pred             ccCCceeHHHHHHHHHhhccccchhccCCCHHHHHHHHHHHHhCCeEe
Confidence             22469999999999532        2347788899999998876554

>KOG0480|consensus

Probab=99.81  E-value=2.4e-20  Score=179.67  Aligned_cols=149  Identities=25%  Similarity=0.408  Sum_probs=113.5

Q ss_pred             hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhH
Q psy13403          4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQ---VTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDV   80 (195)
Q Consensus         4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~---~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV   80 (195)
                      .||| ...|.+|.+    |.+.+++      +|..||+.+.   +.+++|||+||||||||||||.||++|++.||++||
T Consensus       568 ~yAR-~~~P~ls~e----a~~~lve------~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v  636 (764)
T KOG0480|consen  568 RYAR-NFKPKLSKE----ASEMLVE------KYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDV  636 (764)
T ss_pred             HHHH-hcCccccHH----HHHHHHH------HHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHH
Confidence            5899 999999999    5566667      8999999873   246899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhhh-------------------hHHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhhhhccchhhH
Q psy13403         81 NMAIRMMLESFVDTQK-------------------YSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQ  141 (195)
Q Consensus        81 ~~AI~L~~~S~i~~qk-------------------~s~~k~l~~~f~kY~~~~~d~~eli~~ilr~i~~~~~~~~~~~~~  141 (195)
                      ++|++|+..|++....                   .+..+.+...|++|....+    .+...++.  ..+... ++..+
T Consensus       637 ~ea~eLlk~Siv~ve~ddi~~~d~~~~~~~~g~s~~~~~k~~~~a~~~y~~~~~----~~v~~~~~--~~E~~~-~~~~~  709 (764)
T KOG0480|consen  637 EEAVELLKKSIVRVEGDDIELDDNDGENDSGGESAQKPKKKFTSALDEYVRLSN----GIVLSIRV--ERELAD-LKRSN  709 (764)
T ss_pred             HHHHHHHHhhheeeccccccccccccccCcccccccchhhHHHHHHHHHHHHhh----ceeEEEEe--ecchhh-hhhhh
Confidence            9999999999998632                   1124567888899987655    22222221  111111 67899


Q ss_pred             HHHHHhhhccc----hh------HHHHHHHHHHHH-HHHH
Q psy13403        142 TFQKYLSFKKD----TT------ELLYYILRQMTL-DQLM  170 (195)
Q Consensus       142 ~~~~~l~~~~~----~~------~ll~~~L~~lv~-d~~~  170 (195)
                      +++|||++.++    ++      .+.++++.+|+. |+..
T Consensus       710 lv~~~l~~~e~~l~~e~~li~k~~~~~kvi~rl~~~~~vl  749 (764)
T KOG0480|consen  710 LVVWYLSEFEDSLNSEGELIKKGPKVYKVISRLIHRDQVL  749 (764)
T ss_pred             hhhhhHHHHHhhhccHHHHHHhcchHHHHHHHHhccceeE
Confidence            99999999877    33      447888888877 5443

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=99.80  E-value=1.8e-19  Score=175.15  Aligned_cols=151  Identities=22%  Similarity=0.254  Sum_probs=105.8

Q ss_pred             hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhH
Q psy13403          4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQ---VTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDV   80 (195)
Q Consensus         4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~---~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV   80 (195)
                      +|||.++.|.+|+++.    +.+.+      +|++||+++.   ..+++|||+||||||||||||||||+||+.|+++||
T Consensus       516 ~YAR~~v~P~lt~ea~----e~l~~------~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~  585 (682)
T COG1241         516 SYARKNVTPVLTEEAR----EELED------YYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDV  585 (682)
T ss_pred             HHHhccCCcccCHHHH----HHHHH------HHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHH
Confidence            6999999999999944    55555      8999999653   357899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhhh----hHHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhhhhccchhhHHHHHHhhhccchhHH
Q psy13403         81 NMAIRMMLESFVDTQK----YSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTEL  156 (195)
Q Consensus        81 ~~AI~L~~~S~i~~qk----~s~~k~l~~~f~kY~~~~~d~~eli~~ilr~i~~~~~~~~~~~~~~~~~~l~~~~~~~~l  156 (195)
                      ++||+|+..|+.+..-    ..+.......+..+  ...+..+.+..+++++.+....   +..+++...-   +.+++-
T Consensus       586 ~eAi~lv~~~l~~v~~dp~~g~~d~~~~~~~~~~--~~~~~~~~~~~~i~e~~~~~~~---~~~~~~~~~~---g~~~~~  657 (682)
T COG1241         586 DEAIRLVDFSLKTVAVDPEKGKIDIDIIEPGKSK--SKRDKIEKVLDIIKELVERSED---PVEEIIEEAE---GISEKE  657 (682)
T ss_pred             HHHHHHHHHHHHHhhcCccCCceehhhhccCCcc--hhhhhHHHHHHHHHHHhhcccc---hHHHHHHHHc---CCCHHH
Confidence            9999999999877432    22222221121111  1345556667777777665332   4444444443   334445


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy13403        157 LYYILRQMTLDQLMYI  172 (195)
Q Consensus       157 l~~~L~~lv~d~~~~~  172 (195)
                      +-++|..|.+....|.
T Consensus       658 ~e~~l~~l~~~g~i~~  673 (682)
T COG1241         658 VEEALEKLKKKGDILE  673 (682)
T ss_pred             HHHHHHHHHhcCcEec
Confidence            6667777766654443

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=99.71  E-value=1.9e-18  Score=154.25  Aligned_cols=78  Identities=38%  Similarity=0.655  Sum_probs=65.7

Q ss_pred             hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHH
Q psy13403          4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQ-VTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNM   82 (195)
Q Consensus         4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~-~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~   82 (195)
                      +|||.+++|.+|+++.    +.+.+      +|+.+|+... ..++.|+|+|+||||||||||||||+||++|+++||.+
T Consensus       252 ~yar~~~~P~ls~ea~----~~I~~------~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~  321 (331)
T PF00493_consen  252 AYARQNIHPVLSEEAK----ELIIN------YYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEE  321 (331)
T ss_dssp             HHHHHHC--EE-HHCH----HHHHH------HHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHH
T ss_pred             HHHHhhcccccCHHHH----HHHHH------HHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHH
Confidence            6999999999999954    44444      8999999873 46899999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy13403         83 AIRMMLESF   91 (195)
Q Consensus        83 AI~L~~~S~   91 (195)
                      ||+|+..|+
T Consensus       322 Ai~L~~~Sl  330 (331)
T PF00493_consen  322 AIRLFEESL  330 (331)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            999999996

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>KOG0481|consensus

Probab=99.70  E-value=1.8e-16  Score=150.92  Aligned_cols=151  Identities=20%  Similarity=0.253  Sum_probs=96.1

Q ss_pred             hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhh---hcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhH
Q psy13403          4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMK---QVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDV   80 (195)
Q Consensus         4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~---~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV   80 (195)
                      .|||.+|.|++|++    |.+-|...||..+.  .+|+..   ..+.++||||||||+|||++|+.|||+|++.+|+.||
T Consensus       559 ~YcR~kc~PrLs~~----AaekL~~~yV~~R~--~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV  632 (729)
T KOG0481|consen  559 QYCRLKCGPRLSAE----AAEKLSSRYVTMRK--GVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHV  632 (729)
T ss_pred             HHHHhccCCCCCHH----HHHHHHHHHhHHHH--HHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHH
Confidence            69999999999999    66788775555333  222221   2357999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhhhhHHHHHHHHHHHhhhhccCChhH--HHHHHHHHHhhhhhhccchhhHHHHHHhhhccchhHHHH
Q psy13403         81 NMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTE--LLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLY  158 (195)
Q Consensus        81 ~~AI~L~~~S~i~~qk~s~~k~l~~~f~kY~~~~~d~~e--li~~ilr~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~  158 (195)
                      ++|++|+..|.+++.-...-..+. .|.    ...+.++  .|-.-||+.+.-  -..++-..++++++.+.-+ +.++.
T Consensus       633 ~EA~RLF~vSTmdAa~~g~l~g~e-gf~----s~e~~e~i~rie~qlkrr~~I--G~~~se~~li~df~~~~y~-e~~v~  704 (729)
T KOG0481|consen  633 EEALRLFQVSTMDAASQGTLAGVE-GFT----SPEDQEEIKRIEKQLKRRFAI--GSQVSEHSLIRDFVRQGYS-EHAVK  704 (729)
T ss_pred             HHHHHHHhHhhHHHHhcCchhccc-ccC----CHHHHHHHHHHHHHHHHhccc--ccchhHHHHHHHHHhcccc-HHHHH
Confidence            999999999988864432111111 000    0000000  000011111110  0126677888888855544 34456


Q ss_pred             HHHHHHHHHH
Q psy13403        159 YILRQMTLDQ  168 (195)
Q Consensus       159 ~~L~~lv~d~  168 (195)
                      ++|.-|.+-.
T Consensus       705 kal~~m~~rg  714 (729)
T KOG0481|consen  705 KALQIMLRRG  714 (729)
T ss_pred             HHHHHHHhhh
Confidence            6666666553

>KOG0482|consensus

Probab=99.65  E-value=4.5e-16  Score=148.09  Aligned_cols=124  Identities=24%  Similarity=0.295  Sum_probs=100.7

Q ss_pred             HhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHH
Q psy13403          5 HAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQV-TGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMA   83 (195)
Q Consensus         5 ~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~-~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~A   83 (195)
                      +|| +.+|+|.++         +..||. ..|++||+++.+ .....+|+|.|.+|+|||.|+|||||++.|+++||++|
T Consensus       566 ~ak-~~~P~vp~~---------l~dyi~-~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EA  634 (721)
T KOG0482|consen  566 LAK-RKNPVVPEA---------LADYIT-GAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEA  634 (721)
T ss_pred             HHh-hcCCCCCHH---------HHHHHH-HHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence            344 468888887         344554 589999998754 35678999999999999999999999999999999999


Q ss_pred             HHHHHHHhHhhhhhHHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhhhhccchhhHHHHHHhhhc
Q psy13403         84 IRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFK  150 (195)
Q Consensus        84 I~L~~~S~i~~qk~s~~k~l~~~f~kY~~~~~d~~eli~~ilr~i~~~~~~~~~~~~~~~~~~l~~~  150 (195)
                      +|||..|     |.|+...-.++      ...+..+.||++||+++.+-....++.+++.+||..+-
T Consensus       635 LRLme~s-----K~sL~~~~~~~------~~~~~~~~if~iirel~~e~g~~~v~~s~~~~r~~~kG  690 (721)
T KOG0482|consen  635 LRLMEMS-----KDSLYQDDGQK------EDTSATDAIFAIIRELAGEGGKRCVKLSNAEQRCVRKG  690 (721)
T ss_pred             HHHHHhh-----hcccccccccc------cccchHHHHHHHHHHHHhhcCCceeeHHHHHHHHHHcC
Confidence            9999999     77776663222      23456889999999999954445599999999999884

>smart00350 MCM minichromosome maintenance proteins

Probab=99.63  E-value=6.3e-16  Score=145.13  Aligned_cols=79  Identities=37%  Similarity=0.630  Sum_probs=69.6

Q ss_pred             hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhH
Q psy13403          4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVT---GSLPITIRHIESMIRMAQAHAKMHLREHVSEDDV   80 (195)
Q Consensus         4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~---~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV   80 (195)
                      +|||.++.|.+|+++.    +.+++      +|.++|+.+...   ..+++|+|+||||||||+|||||++|++|+++||
T Consensus       428 ~~ar~~~~P~ls~~~~----~~i~~------~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv  497 (509)
T smart00350      428 AYAREKIKPKLSEEAA----EKLVK------AYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADV  497 (509)
T ss_pred             HHHHhcCCCCCCHHHH----HHHHH------HHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Confidence            6999999999999955    44444      899999865432   5789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhH
Q psy13403         81 NMAIRMMLESFV   92 (195)
Q Consensus        81 ~~AI~L~~~S~i   92 (195)
                      .+|++|+..|++
T Consensus       498 ~~ai~l~~~s~~  509 (509)
T smart00350      498 EEAIRLLRESII  509 (509)
T ss_pred             HHHHHHHHHhhC
Confidence            999999999975

>KOG0479|consensus

Probab=99.50  E-value=3e-14  Score=137.35  Aligned_cols=81  Identities=25%  Similarity=0.450  Sum_probs=72.1

Q ss_pred             hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhH
Q psy13403          4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQV---TGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDV   80 (195)
Q Consensus         4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~---~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV   80 (195)
                      .|||.++.|.+++++.+    ...      +.|++||+.+..   ....|||+|+||.|||||.||||+|||+.|+.+|+
T Consensus       566 hyAk~ri~P~Lt~ea~e----~Ia------~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DA  635 (818)
T KOG0479|consen  566 HYAKSRIKPKLTQEAAE----YIA------EEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDA  635 (818)
T ss_pred             HHHHhhcCccccHHHHH----HHH------HHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhH
Confidence            58999999999999654    333      489999997653   57899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhh
Q psy13403         81 NMAIRMMLESFVDT   94 (195)
Q Consensus        81 ~~AI~L~~~S~i~~   94 (195)
                      +.|+.|+..+++..
T Consensus       636 e~A~~Ll~fA~f~e  649 (818)
T KOG0479|consen  636 EAAVNLLRFALFKE  649 (818)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998873

>KOG0478|consensus

Probab=99.39  E-value=7.1e-13  Score=129.21  Aligned_cols=82  Identities=29%  Similarity=0.511  Sum_probs=73.2

Q ss_pred             hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHH
Q psy13403          4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMA   83 (195)
Q Consensus         4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~A   83 (195)
                      +|||.+++|.+++++.    +.+..      .|++||+.+...+.+..|+|||||||||+||||||++++.|...||++|
T Consensus       651 ~yArk~i~p~l~~ea~----~~l~~------ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA  720 (804)
T KOG0478|consen  651 RYARKNIHPALSPEAS----QALIQ------AYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEA  720 (804)
T ss_pred             HHHhccCCccccHHHH----HHHHH------HhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHH
Confidence            7999999999999955    44444      8999999876667799999999999999999999999999999999999


Q ss_pred             HHHHHHHhHhhh
Q psy13403         84 IRMMLESFVDTQ   95 (195)
Q Consensus        84 I~L~~~S~i~~q   95 (195)
                      ++|.++++-+.-
T Consensus       721 ~~l~R~aL~~~a  732 (804)
T KOG0478|consen  721 VRLLREALKQSA  732 (804)
T ss_pred             HHHHHHHhcccC
Confidence            999999977653

>KOG0477|consensus

Probab=97.90  E-value=8.1e-06  Score=80.37  Aligned_cols=43  Identities=60%  Similarity=1.032  Sum_probs=40.9

Q ss_pred             CchhHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhh
Q psy13403          1 MAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMK   43 (195)
Q Consensus         1 ~~~a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~   43 (195)
                      |||||||||+|.+|+++|+++||.+++++||.+++|+-+|...
T Consensus       732 ~seAhArm~Lr~~V~~~d~~~AI~v~ldSfi~aQk~Sv~rslr  774 (854)
T KOG0477|consen  732 MSEAHARMHLREYVTEEDVDMAIRVMLDSFISAQKFSVMRSLR  774 (854)
T ss_pred             HHHHHHHHHHHhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999888764

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=96.77  E-value=0.0057  Score=59.66  Aligned_cols=67  Identities=18%  Similarity=0.224  Sum_probs=53.8

Q ss_pred             cCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHH
Q psy13403         10 LREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLE   89 (195)
Q Consensus        10 ~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~   89 (195)
                      .-|.++++++    +.+++      +|   ++++...+.+|++.|+|++|+|.|.+.|+...++.|+.+||.+|++....
T Consensus       327 ~l~~~s~~Av----~~Li~------~~---~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~  393 (608)
T TIGR00764       327 RIPHFTRDAV----EEIVR------EA---QRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKT  393 (608)
T ss_pred             CCCcCCHHHH----HHHHH------HH---HHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence            5677888855    44444      33   33345567899999999999999999999999999999999999988764

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=93.86  E-value=0.21  Score=48.95  Aligned_cols=40  Identities=30%  Similarity=0.268  Sum_probs=36.7

Q ss_pred             chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHHh
Q psy13403         52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESF   91 (195)
Q Consensus        52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~   91 (195)
                      +.|-...++|+|.|+|.|+-+++|+++||.+|+.++..--
T Consensus       269 s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR  308 (633)
T TIGR02442       269 GHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPHR  308 (633)
T ss_pred             CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhh
Confidence            4799999999999999999999999999999999987543

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=93.85  E-value=0.16  Score=49.48  Aligned_cols=39  Identities=33%  Similarity=0.467  Sum_probs=36.1

Q ss_pred             chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403         52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLES   90 (195)
Q Consensus        52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S   90 (195)
                      +.|-...++|.|.|+|.++.+++|+++||..|+.++..-
T Consensus       223 s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~h  261 (589)
T TIGR02031       223 GHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLP  261 (589)
T ss_pred             CccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Confidence            478999999999999999999999999999999998744

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=92.26  E-value=0.11  Score=52.02  Aligned_cols=30  Identities=50%  Similarity=0.670  Sum_probs=26.8

Q ss_pred             CchhHhhhhcCCCCChHhHHHHHHHHHhhh
Q psy13403          1 MAQAHAKMHLREHVSEDDVNMAIRMMLESF   30 (195)
Q Consensus         1 ~~~a~ar~~~~p~vs~~~~~~A~~~lle~f   30 (195)
                      |||||||++|++.|+++|+++|++.+..+.
T Consensus       567 LaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l  596 (682)
T COG1241         567 LAEAHAKMRLSDVVEEEDVDEAIRLVDFSL  596 (682)
T ss_pred             HHHHHHhhhccCCCCHHHHHHHHHHHHHHH
Confidence            589999999999999999999998876543

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=91.64  E-value=0.63  Score=42.53  Aligned_cols=39  Identities=26%  Similarity=0.273  Sum_probs=36.5

Q ss_pred             chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403         52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLES   90 (195)
Q Consensus        52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S   90 (195)
                      ++|-...++|.|.|+|-++-|++|+++||..|..+...-
T Consensus       274 s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~H  312 (337)
T TIGR02030       274 GLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRH  312 (337)
T ss_pred             CCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999988765

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=91.33  E-value=0.14  Score=52.62  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=26.1

Q ss_pred             CchhHhhhhcCCCCChHhHHHHHHHHHh
Q psy13403          1 MAQAHAKMHLREHVSEDDVNMAIRMMLE   28 (195)
Q Consensus         1 ~~~a~ar~~~~p~vs~~~~~~A~~~lle   28 (195)
                      |||||||+++++.|+.+|+++|++.+..
T Consensus       779 LsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~  806 (915)
T PTZ00111        779 ISVSLARMRLSTVVTPADALQAVQIVKS  806 (915)
T ss_pred             HHHHHhhhcCcCcccHHHHHHHHHHHHH
Confidence            5899999999999999999999988865

>PRK13531 regulatory ATPase RavA; Provisional

Probab=88.80  E-value=4  Score=39.69  Aligned_cols=77  Identities=12%  Similarity=0.113  Sum_probs=52.3

Q ss_pred             CCCCChHhHHHHHHHHHhhhHHH---HHHHHHHHhhhc-CCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHH
Q psy13403         11 REHVSEDDVNMAIRMMLESFVDT---QKYSVMKQMKQV-TGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRM   86 (195)
Q Consensus        11 ~p~vs~~~~~~A~~~lle~fI~~---~~Y~~lR~~~~~-~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L   86 (195)
                      .|.+|.+++....+..-.=+|..   ++-..+++.-.. .....+++|---.++|++.|+|=++=|++|+++||..|-.+
T Consensus       204 ~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ll~~v  283 (498)
T PRK13531        204 SLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLILLKDC  283 (498)
T ss_pred             cCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHHHhHHH
Confidence            56788888765543332222221   122366654222 22345999999999999999999999999999999955544


Q ss_pred             H
Q psy13403         87 M   87 (195)
Q Consensus        87 ~   87 (195)
                      +
T Consensus       284 L  284 (498)
T PRK13531        284 L  284 (498)
T ss_pred             h
Confidence            4

>TIGR00368 Mg chelatase-related protein

Probab=88.38  E-value=0.54  Score=45.17  Aligned_cols=39  Identities=18%  Similarity=0.357  Sum_probs=36.1

Q ss_pred             CcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHH
Q psy13403         48 SLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRM   86 (195)
Q Consensus        48 ~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L   86 (195)
                      ...+|.|....|+|+|.+.|.|+.++.|+.+||.+|+..
T Consensus       460 ~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~  498 (499)
T TIGR00368       460 KLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIEY  498 (499)
T ss_pred             hcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence            356899999999999999999999999999999999863

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=85.54  E-value=3.1  Score=38.43  Aligned_cols=39  Identities=26%  Similarity=0.218  Sum_probs=36.1

Q ss_pred             chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403         52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLES   90 (195)
Q Consensus        52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S   90 (195)
                      ++|--..++|.|.|+|=++=|++|+++||..|..+...=
T Consensus       287 s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~H  325 (350)
T CHL00081        287 GLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRH  325 (350)
T ss_pred             CChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999887654

>PRK09862 putative ATP-dependent protease; Provisional

Probab=84.05  E-value=1.6  Score=42.33  Aligned_cols=39  Identities=15%  Similarity=0.354  Sum_probs=36.0

Q ss_pred             cccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHH
Q psy13403         49 LPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMM   87 (195)
Q Consensus        49 ~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~   87 (195)
                      ..++.|-...++|+|.+.|-|.-+++|+++||.+|+.+-
T Consensus       454 ~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR  492 (506)
T PRK09862        454 LGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR  492 (506)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence            457899999999999999999999999999999999753

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=82.79  E-value=3.7  Score=40.83  Aligned_cols=61  Identities=20%  Similarity=0.278  Sum_probs=47.6

Q ss_pred             CCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHH
Q psy13403         11 REHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAI   84 (195)
Q Consensus        11 ~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI   84 (195)
                      -|.++++++    ..+++      .|+   +++..++.++...|+|..|+|.|...|+..-++.|+.+||..|+
T Consensus       337 l~~f~~eAV----a~LI~------~~~---R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~  397 (637)
T PRK13765        337 IPHFDRDAV----EEIIR------EAK---RRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAK  397 (637)
T ss_pred             CCCCCHHHH----HHHHH------HHH---HHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHH
Confidence            456777755    44444      332   33445677888899999999999999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	195
3f8t_A	506	Crystal Structure Analysis Of A Full-Length Mcm Hom		3e-04
3f9v_A	595	Crystal Structure Of A Near Full-Length Archaeal Mc		5e-04

>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog From Methanopyrus Kandleri Length = 506

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 10  LREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKM 69
           +REH + +    A R  LE + +T++  V +++     +LP+T R +ES+ R+A+AHA+M
Sbjct: 407 IREHPAPELTEEA-RKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARM 465
Query: 70  HLREHVSEDDVNMAIRMM 87
            L + V  +DV++A  ++
Sbjct: 466 RLSDDVEPEDVDIAAELV 483

>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm: Functional Insights For An Aaa+ Hexameric Helicase Length = 595

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 9   HLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAK 68
           + R++V+    + A  ++ + FV+ +K    K  +     + IT R +E++IR+++A+AK
Sbjct: 513 YARKYVTPKITSEAKNLITDFFVEMRK----KSSETPDSPILITPRQLEALIRISEAYAK 568
Query: 69  MHLREHVSEDDVNMAI---RMMLES 90
           M L+  V+ +D   AI   R+ LES
Sbjct: 569 MALKAEVTREDAERAINIMRLFLES 593

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	2e-18
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	5e-08
3f8t_A	506	Predicted ATPase involved in replication control,	4e-18
3f8t_A	506	Predicted ATPase involved in replication control,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595

 Score = 81.5 bits (202), Expect = 2e-18
 Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 4   AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMA 63
           A+A+ ++   ++ +    A  ++ + FV+ +K    K  +     + IT R +E++IR++
Sbjct: 512 AYARKYVTPKITSE----AKNLITDFFVEMRK----KSSETPDSPILITPRQLEALIRIS 563

Query: 64  QAHAKMHLREHVSEDDVNMAIRMMLES 90
           +A+AKM L+  V+ +D   AI +M   
Sbjct: 564 EAYAKMALKAEVTREDAERAINIMRLF 590

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 1   MAQAHAKMHLREHVSEDDVNMAIRMMLES 29
           +++A+AKM L+  V+ +D   AI +M   
Sbjct: 562 ISEAYAKMALKAEVTREDAERAINIMRLF 590

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506

 Score = 80.3 bits (198), Expect = 4e-18
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 20  NMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDD 79
             A + +   +   ++  V +++     +LP+T R +ES+ R+A+AHA+M L + V  +D
Sbjct: 417 EEARKRLEHWYETRRE-EVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPED 475

Query: 80  VNMAIRMMLESFVD 93
           V++A  ++      
Sbjct: 476 VDIAAELVDWYLET 489

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 1   MAQAHAKMHLREHVSEDDVNMAIRMMLESFVD 32
           +A+AHA+M L + V  +DV++A  ++      
Sbjct: 458 LAKAHARMRLSDDVEPEDVDIAAELVDWYLET 489

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 25/195 (12%)

Query: 11  REHVSEDDVNMAI-----RMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQA 65
             H+S D  +M +     + +L  ++D +   + +++       P  +  I   IR   A
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NPRRLSIIAESIRDGLA 342

Query: 66  HAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKD---TTELLY 122
               + + HV+ D +   I    ES ++  + +  ++M   F +   F       T LL 
Sbjct: 343 TWD-NWK-HVNCDKLTTII----ESSLNVLEPAEYRKM---FDRLSVFPPSAHIPTILLS 393

Query: 123 YILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYI--LRQMTLDQLMYIRGVHGVVI 180
            I   +    ++ +        KY   +K   E    I  +      +L     +H  ++
Sbjct: 394 LIWFDVIKSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 181 DTVEIHEKDFKEKYS 195
           D   I +    +   
Sbjct: 451 DHYNIPKTFDSDDLI 465

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 24/194 (12%), Positives = 54/194 (27%), Gaps = 44/194 (22%)

Query: 21  MAIRM---MLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREH--- 74
             + +    +   + T          ++T  +  ++  +E              R+    
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE----------YRKMFDR 377

Query: 75  --VSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYI-------L 125
             V     ++   ++L         S +  +     KY   +K   E    I        
Sbjct: 378 LSVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 126 RQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLY---YILRQMTLDQLMYIRGVHGVVIDT 182
            ++  +  +H   V   +    +F  D     Y   Y           +I G H   +  
Sbjct: 437 VKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYS--------HI-GHH---LKN 483

Query: 183 VEIHEKD--FKEKY 194
           +E  E+   F+  +
Sbjct: 484 IEHPERMTLFRMVF 497

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
3f8t_A	506	Predicted ATPase involved in replication control,	99.47
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.25
2klq_A	114	CBD, P105MCM, DNA replication licensing factor MCM	97.84
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.35
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.34
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.2
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	93.87

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=99.47  E-value=6.1e-14  Score=131.63  Aligned_cols=84  Identities=25%  Similarity=0.353  Sum_probs=70.4

Q ss_pred             hHhh-hhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCCcccchhhHHHHHHHHHHHhhhhcCCcCCH
Q psy13403          4 AHAK-MHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQV-----TGSLPITIRHIESMIRMAQAHAKMHLREHVSE   77 (195)
Q Consensus         4 a~ar-~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~-----~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~   77 (195)
                      +||| .+++|++++++.    +.+++      .|..+|+....     ...+++|+|++|||||+|+|||||++|++|++
T Consensus       404 ~~ar~~~~~p~ls~ea~----~yI~~------~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~  473 (506)
T 3f8t_A          404 LYAIREHPAPELTEEAR----KRLEH------WYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEP  473 (506)
T ss_dssp             HHHHHHCSCCEECHHHH----HHHHH------HHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred             HHHHhcCCCceeCHHHH----HHHHH------HHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCH
Confidence            6899 899999999955    44444      78888874221     26889999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHhHhhhhh
Q psy13403         78 DDVNMAIRMMLESFVDTQKY   97 (195)
Q Consensus        78 ~DV~~AI~L~~~S~i~~qk~   97 (195)
                      +||.+|++|++.|+.++.-.
T Consensus       474 eDV~~Ai~L~~~Sl~~~a~d  493 (506)
T 3f8t_A          474 EDVDIAAELVDWYLETAMQI  493 (506)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHhcCC
Confidence            99999999999998776443

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.25  E-value=2e-12  Score=121.75  Aligned_cols=80  Identities=25%  Similarity=0.380  Sum_probs=69.9

Q ss_pred             hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--CcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHH
Q psy13403          4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTG--SLPITIRHIESMIRMAQAHAKMHLREHVSEDDVN   81 (195)
Q Consensus         4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~--~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~   81 (195)
                      +|||.+++|.+++++.    +.+.+      +|..||+.....+  +.|+|+|+|++|||+|+|+|+|++++.|+++||.
T Consensus       512 ~~ar~~~~p~ls~ea~----~~l~~------~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~  581 (595)
T 3f9v_A          512 AYARKYVTPKITSEAK----NLITD------FFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAE  581 (595)
T ss_dssp             HHHHHHHCCCCCCCTH----HHHHH------HHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHH
T ss_pred             HHHHHhCCCCCCHHHH----HHHHH------HHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHH
Confidence            5889999999999955    44444      8889998764433  7999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHh
Q psy13403         82 MAIRMMLESFVD   93 (195)
Q Consensus        82 ~AI~L~~~S~i~   93 (195)
                      +|++++..|+-+
T Consensus       582 ~Ai~l~~~sl~~  593 (595)
T 3f9v_A          582 RAINIMRLFLES  593 (595)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999999765

>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}

Probab=97.84  E-value=3.7e-06  Score=64.75  Aligned_cols=60  Identities=15%  Similarity=0.227  Sum_probs=45.5

Q ss_pred             HHHHHHhhhhccCChhHHHHHHHHHHhhhhhh---ccchhhHHHHHHhhhccc----------hhHHHHHHHHHHHH-HH
Q psy13403        103 MKQTFQKYLSFKKDTTELLYYILRQMTLDQLI---HIPFVSQTFQKYLSFKKD----------TTELLYYILRQMTL-DQ  168 (195)
Q Consensus       103 l~~~f~kY~~~~~d~~eli~~ilr~i~~~~~~---~~~~~~~~~~~~l~~~~~----------~~~ll~~~L~~lv~-d~  168 (195)
                      +..+|.+|....+    +   |++.+.+++..   .|++.+|+|+|||.+.++          +++|+.+||++||+ |.
T Consensus         6 ~~Is~d~Y~~i~n----~---lV~~ir~~E~~~~~~G~~~~eLv~WYLeq~e~~i~seeel~~e~~lv~kVI~rLI~~D~   78 (114)
T 2klq_A            6 LRLGFSEYSRISN----L---IVLHLRKVEEEEDESALKRSELVNWYLKEIESEIDSEEELINKKRIIEKVIHRLTHYDH   78 (114)
T ss_dssp             CTTCCHHHHHHHH----H---HHHHHHHHHHHTSSSCBCHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEeeHHHHHHHHH----H---HHHHHHHHhhhcccCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhCC
Confidence            4557888886655    4   35555544433   689999999999999875          77889999999999 64


Q ss_pred             H
Q psy13403        169 L  169 (195)
Q Consensus       169 ~  169 (195)
                      +
T Consensus        79 i   79 (114)
T 2klq_A           79 V   79 (114)
T ss_dssp             C
T ss_pred             E
Confidence            4

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.35  E-value=0.0064  Score=56.40  Aligned_cols=77  Identities=16%  Similarity=0.127  Sum_probs=50.2

Q ss_pred             CCCCChHhHHHHHHHHHhhhHH---HHHHHHHHHhh-hcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHH
Q psy13403         11 REHVSEDDVNMAIRMMLESFVD---TQKYSVMKQMK-QVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRM   86 (195)
Q Consensus        11 ~p~vs~~~~~~A~~~lle~fI~---~~~Y~~lR~~~-~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L   86 (195)
                      .|.++++++..+.+....-++.   .++++.++... .......+++|.+++++|+|+|+|.++.+++|+++||..|..+
T Consensus       206 ~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a~~v  285 (500)
T 3nbx_X          206 ALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDC  285 (500)
T ss_dssp             TTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGGGGT
T ss_pred             cceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHHHHHhh
Confidence            3556666665554433221111   12444555431 1234556799999999999999999999999999999955444


Q ss_pred             H
Q psy13403         87 M   87 (195)
Q Consensus        87 ~   87 (195)
                      +
T Consensus       286 L  286 (500)
T 3nbx_X          286 L  286 (500)
T ss_dssp             S
T ss_pred             h
Confidence            4

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.34  E-value=0.01  Score=50.05  Aligned_cols=43  Identities=21%  Similarity=0.195  Sum_probs=39.0

Q ss_pred             CcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403         48 SLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLES   90 (195)
Q Consensus        48 ~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S   90 (195)
                      ..++++|.+.+++|++.|+|.++.++.|+++||.+|+..+...
T Consensus       258 ~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~  300 (331)
T 2r44_A          258 LYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH  300 (331)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred             ccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence            3578999999999999999999999999999999999877644

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.20  E-value=0.013  Score=54.71  Aligned_cols=63  Identities=19%  Similarity=0.296  Sum_probs=47.9

Q ss_pred             cCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHH
Q psy13403         10 LREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIR   85 (195)
Q Consensus        10 ~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~   85 (195)
                      ..|.++++++    +.+++      +|.   +.....+.+++++|+|++++|.|.+.|+++.++.|+.+||..|+.
T Consensus       311 ~~~~ls~eAl----~~Li~------~~~---r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~  373 (604)
T 3k1j_A          311 KIPHFTKEAV----EEIVR------EAQ---KRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVK  373 (604)
T ss_dssp             SSCCBBHHHH----HHHHH------HHH---HTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             CcccCCHHHH----HHHHH------HHh---hhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence            3467777744    33433      332   223334568899999999999999999999999999999999995

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=93.87  E-value=0.13  Score=42.89  Aligned_cols=41  Identities=22%  Similarity=0.238  Sum_probs=37.7

Q ss_pred             chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhH
Q psy13403         52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFV   92 (195)
Q Consensus        52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i   92 (195)
                      ++|.+..+++++.++|.++-++.|+.+||..|+.++....+
T Consensus       287 ~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~  327 (350)
T 1g8p_A          287 GLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL  327 (350)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred             CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence            68999999999999999999999999999999999877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	1e-04

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 11/80 (13%), Positives = 23/80 (28%)

Query: 9   HLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAK 68
             R    +    +         V+    ++              +R   +++R A+A A 
Sbjct: 227 EWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAA 286

Query: 69  MHLREHVSEDDVNMAIRMML 88
           +     V  D +     M L
Sbjct: 287 LEGATAVGRDHLKRVATMAL 306

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.15
d1ls1a1	88	Signal sequence recognition protein Ffh {Thermus a	89.9

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.15  E-value=0.0026  Score=52.27  Aligned_cols=39  Identities=23%  Similarity=0.262  Sum_probs=36.4

Q ss_pred             chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403         52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLES   90 (195)
Q Consensus        52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S   90 (195)
                      ++|....++|+|+|+|.|+.+++|+++||.+|+.+.+.-
T Consensus       270 S~R~~~~llrvArtiA~L~gr~~V~~~di~~a~~lvL~h  308 (333)
T d1g8pa_         270 GLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSH  308 (333)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred             ChHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence            789999999999999999999999999999999987654

>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=89.90  E-value=1.1  Score=30.83  Aligned_cols=46  Identities=17%  Similarity=0.434  Sum_probs=38.8

Q ss_pred             HHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhhh-hhHHHHHHHHH
Q psy13403         61 RMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ-KYSVMKQMKQT  106 (195)
Q Consensus        61 RLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~q-k~s~~k~l~~~  106 (195)
                      ||+.|..+++=+..++++|++++++=++.|++++. ..++-+.+...
T Consensus         8 ~l~~a~~~l~g~~~i~E~~i~~~l~eir~ALLeADV~l~vvk~f~~~   54 (88)
T d1ls1a1           8 RLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVER   54 (88)
T ss_dssp             HHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence            68899999999999999999999999999999974 34666665544