Psyllid ID: psy13410

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
Protein Sequence
MKFDQGPTSVVQPTSVVQLLTRWTLDLELNWVCTQDTLSTWLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGCFQC
Secondary Structure (PSIPRED)
cccccccccccccccEEEccccccccccccccccccccccccccEEcccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHcccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccEEEEccEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHEEEEccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccEEccccHEEEEcccccccccccccccccccccccEEEEcccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccHHHHccccccccEEEEHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccccccccccHHHHHccccccccccccccEEEEcccHHcccccccccccccccccccccEEEEcccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccEEEEEEc
Coil and Loop (DISEMBL)
mkfdqgptsvvqptSVVQLLTRWTLDLELNWVCTQDTLSTWLNWVCtqdtlstwaltpqlnwvctQDTLSTWAQAFFFCGAIVGGLVFGWVadrfgrvpALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGmpiyktrnldfddvlphlgefgrYQKVLFFSMILFAFAEAFVYFSQIFITVipehywcrvpelshldyadkeeshEEADTIAESYIKrnhtgdrglhnsprssthgslnreslksrsltRRNMDFvnrgfgenlgefGRYQKVLFFSMILFAFAEAFVYFSQIFITVipehywcrvpelshldFEQRKLISIPQIGAAFDSCRMYAVNYTHllgsgitkadpswpivecqhgwdydhsdipyttIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVadrfgrvpALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILetnrkpfpgcfqc
Flexible Loop (DISEMBL)
mkfdqgptsvvqptsvVQLLTRWTLDLELNWVCTQDTLSTWLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKrnhtgdrglhnsprssthgslnreslksrsltrrnmDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETnrkpfpgcfqc
Low Complexity Region (SEG)
MKFDQGPTSVVQPTSVVQLLTRWTLDLELNWVCTQDTLSTWLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGCFQC
Disordered region (IsUnstruct)
************PTSVVQLLTRWTLDLELNWVCTQDTLSTWLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDY*******************************************************DFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG****
Disordered Region (DISOPRED)
MKFDQ**TS*VQPTSVVQLLTRWTLDLELNWVCTQDTLSTWLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGCFQC
Disordered Region (DISEMBL)
************PTSVVQLLTRWTLDLELNWVCTQDTLSTWLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDYAD********DTIAESYIKRNHTGDR*********************RSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGCFQC
Disordered Region (DISPRO)
******PTSVVQPTSVVQLLTRWTLD**********TLSTWLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSG*****PSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGCFQC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKFDQGPTSVVQPTSVVQLLTRWTLDLELNWVCTQDTLSTWLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGCFQC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	493	2.2.26 [Sep-21-2011]
O57379	562	Solute carrier family 22	N/A	N/A	0.393	0.345	0.314	1e-18
Q66J52	552	Solute carrier family 22	N/A	N/A	0.417	0.373	0.295	2e-18
Q9U539	585	Organic cation transporte	yes	N/A	0.430	0.362	0.315	3e-18
Q1RPP5	547	Solute carrier family 22	yes	N/A	0.395	0.356	0.312	7e-18
Q9WTN6	564	Solute carrier family 22	yes	N/A	0.397	0.347	0.298	1e-17
O08966	556	Solute carrier family 22	no	N/A	0.403	0.357	0.296	2e-17
O77504	554	Solute carrier family 22	yes	N/A	0.403	0.359	0.306	2e-17
O75751	556	Solute carrier family 22	yes	N/A	0.411	0.365	0.286	2e-17
Q864Z3	549	Solute carrier family 22	no	N/A	0.381	0.342	0.312	3e-17
O70577	553	Solute carrier family 22	no	N/A	0.421	0.376	0.286	3e-17

>sp|O57379|S22A6_PSEAM Solute carrier family 22 member 6 OS=Pseudopleuronectes americanus GN=SLC22A6 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 98/207 (47%), Gaps = 13/207 (6%)

Query: 278 ENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSH--LDFEQRKL 335
           E +G  GR+Q +    + +     A     Q F+  +P HY      LS   L  E+  L
Sbjct: 8   EQVGSTGRFQVLHVTLLCIPVLMMASHNLLQNFVATVPSHYCNAHANLSQARLSLEESLL 67

Query: 336 ISIPQIGAAF-DSCRMYAVNYTHLLGSGITK-----ADPS----WPIVECQHGWDYDHSD 385
           I++P  GA     C+ YA    HLLG   T      AD +      + EC  GW Y+ S 
Sbjct: 68  ITVPLDGAGKPQRCQRYAAPQWHLLGKNGTSGSGDLADATESMDAALQECSDGWSYN-ST 126

Query: 386 IPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFI 445
           +  +TI +E + VC   +     Q  +  G +VG L+FG ++DR+GR   L+++NL+  +
Sbjct: 127 VRSSTIISEWHLVCDMHSFKQMGQTIYMGGVLVGALLFGGLSDRYGRRILLLISNLLMAV 186

Query: 446 FGVVTAFTKSFWQFALCRFFVGLSFDN 472
            G   AF+ SF  F + RF  GL+   
Sbjct: 187 SGTCAAFSSSFSLFCVFRFGCGLALSG 213

Involved in the renal elimination of endogenous and exogenous organic anions. Functions as organic anion exchanger when the uptake of one molecule of organic anion is coupled with an efflux of one molecule of endogenous dicarboxylic acid (glutarate, ketoglutarate, etc). Mediates the sodium-independent uptake of p-aminohippurate (PAH), 2,3-dimercapto-1-propanesulfonic acid (DMPS), cidofovir, adefovir, 9-(2-phosphonylmethoxyethyl) guanine (PMEG), 9-(2-phosphonylmethoxyethyl) diaminopurine (PMEDAP), ochratoxin (OTA), acyclovir (ACV), 3'-azido-3-'deoxythymidine (AZT), cimetidine (CMD), 2,4-dichloro-phenoxyacetate (2,4-D), hippurate (HA), indoleacetate (IA), indoxyl sulfate (IS), 3-carboxy-4-methyl-5-propyl-2-furanpropionate (CMPF) and edaravone sulfate (By similarity). Mediates the sodium-independent uptake of p-aminohippurate (PAH). PAH uptake is inhibited by p-chloromercuribenzenesulphonate (PCMBS), diethyl pyrocarbonate (DEPC), indomethacin, sulindac, diclofenac, carprofen, okadaic acid, benzothiazolylcysteine (BTC), S-chlorotrifluoroethylcysteine (CTFC), cysteine S-conjugates S-dichlorovinylcysteine (DCVC), furosemide, steviol, phorbol 12-myristate 13-acetate (PMA), calcium ionophore A23187, benzylpenicillin, bumetamide, losartan, probenecid, phenol red, urate, glutarate and alpha-ketoglutarate (By similarity). PAH uptake is inhibited by glutarate.
Pseudopleuronectes americanus (taxid: 8265)

>sp|Q66J52|S226B_XENLA Solute carrier family 22 member 6-B OS=Xenopus laevis GN=slc22a6-b PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 7/213 (3%)

Query: 278 ENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRV----PELSHLDFEQR 333
           E+LG  GRYQ +    + L  F  A     Q F    P H+ CR+     E +      R
Sbjct: 8   ESLGGMGRYQVIHVVLLSLPVFMLASHNLMQNFTAATPSHH-CRINGTYEETNFTGPWLR 66

Query: 334 KLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIAT 393
            L+ +   G  F  C  Y      LL + +T++        C  GW YDHS+   +TI T
Sbjct: 67  ALLPMTPTGE-FSKCLRYTTPQYELLENNLTQSYDDLETEPCLDGWVYDHSEFA-STIIT 124

Query: 394 ELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT 453
           + + VC    +   AQ+ +  G +VG ++FG ++D+FGR P  + +NL  F+ G+  AF+
Sbjct: 125 QWDLVCNHRRMRQVAQSIYMAGVLVGSILFGGLSDKFGRRPLNIWSNLQMFVTGICAAFS 184

Query: 454 KSFWQFALCRFFVGLSFDNCFTMMYILETNRKP 486
            ++  + + RF  G++F       Y L     P
Sbjct: 185 PNYIWYCIFRFLTGVAFSGIVLNSYSLTVEWIP 217

Involved in the renal elimination of endogenous and exogenous organic anions. Mediates the sodium-independent uptake of p-aminohippurate (PAH), cidofovir, adefovir, 9-(2-phosphonylmethoxyethyl) guanine (PMEG), 9-(2-phosphonylmethoxyethyl) diaminopurine (PMEDAP) and edaravone sulfate. PAH uptake is inhibited by furosemide, steviol, phorbol 12-myristate 13-acetate (PMA), calcium ionophore A23187, benzylpenicillin, furosemide, indomethacin, bumetamide, losartan, probenecid, phenol red, urate, and alpha-ketoglutarate.

Xenopus laevis (taxid: 8355)

>sp|Q9U539|OCT1_CAEEL Organic cation transporter 1 OS=Caenorhabditis elegans GN=oct-1 PE=1 SV=3

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 29/241 (12%)

Query: 250 THGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMIL-FAFAEAFVYFSQ 308
           T   +++E L S +    + DFV     E +G +G YQ V FF + L  +   AF  F+ 
Sbjct: 8   TFAEISQEILMSAT-KPPDFDFVL----EQVGNYGTYQIVFFFIICLPTSLPSAFSAFNI 62

Query: 309 IFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADP 368
            F+   P H  C +PE        R L +  QI     SC+ Y  N T +    + +A  
Sbjct: 63  PFVVGNPPHT-CHIPEGKEY---LRPLTNDTQI----LSCKQY--NETQI---NVFRAFT 109

Query: 369 SWPI---------VECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVG 419
           S P+         V CQ+GWDYD+S     ++ TE N VC Q      +   F+ G+ +G
Sbjct: 110 SAPVDTYSDRISLVPCQNGWDYDNSTY-LDSLVTEFNLVCDQQAWIEISTTSFYVGSFIG 168

Query: 420 GLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYI 479
             +FG+VAD+FGR  +  +   V  + G  ++F K    F + RFF GL+F   F + +I
Sbjct: 169 NCLFGYVADKFGRRRSFFVILTVLIVCGTASSFAKDIESFIILRFFTGLAFPALFQIPFI 228

Query: 480 L 480
           +
Sbjct: 229 I 229

Transports organic cations such as tetraethylammonium (TEA). Displays a broad substrate specificity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q1RPP5|S22A7_PIG Solute carrier family 22 member 7 OS=Sus scrofa GN=SLC22A7 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 26/221 (11%)

Query: 278 ENLGEFGRYQKVLFFSMILFAFAEAFV---YFSQIFITVIPEHYWCRVP----ELSHLD- 329
           + +G FG +Q    +++ L A     +   +   IF+T +P H  C +P      SH D 
Sbjct: 8   DKVGGFGPFQ---LWNVALLALPRVLLPMHFLLPIFLTAVPAHR-CALPGAPANFSHQDA 63

Query: 330 FEQRKLISIPQIGAAFDSCRMY----AVNYTHLLGSGIT-----KADPSWPIVECQHGWD 380
           + +  L   P     F SC  +    A+  T L G G +     + +PS   V C  GW+
Sbjct: 64  WLEAHLPREPD--GRFSSCLRFTHSRALPNTTLWGLGQSPGEQLEGEPS--TVPCPQGWE 119

Query: 381 YDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTN 440
           YDHS+   +TIATE + VC Q  L+     FFF G +VG + FG+++DRFGR   L++  
Sbjct: 120 YDHSEF-SSTIATEWDLVCEQKGLNRATSTFFFAGVLVGAVAFGYLSDRFGRRRLLLVAY 178

Query: 441 LVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481
           +   + G+V+A + S+  FA+ R   G +      ++  LE
Sbjct: 179 VSALVLGLVSAASVSYTMFAITRTLTGTALAGFTIIVMPLE 219

Mediates sodium-independent multispecific organic anion transport.

Sus scrofa (taxid: 9823)

>sp|Q9WTN6|S22AL_MOUSE Solute carrier family 22 member 21 OS=Mus musculus GN=Slc22a21 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 101/218 (46%), Gaps = 22/218 (10%)

Query: 280 LGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLD---------F 330
           LGE+G +Q+++FF +        F   S +F+T IPEH  CR+P+  +L           
Sbjct: 11  LGEWGTFQRLIFFLLSASIIPNGFTGLSAVFLTAIPEHR-CRIPDTVNLSSAWRNHSIPM 69

Query: 331 EQRKLISIPQIGAAFDSCRMYAV----NYTHL-LGSGITKADPSWPIVECQHGWDYDHSD 385
           E +    +PQ       CR Y +    N++ L L  G            C  GW+YD  D
Sbjct: 70  ETKDGPEVPQ------KCRRYRLATIANFSELGLEPGRDVDLEQLEQENCLDGWEYDK-D 122

Query: 386 IPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFI 445
           I  +TI TE + VC  D  +    +FF+ G ++G  + G ++DRFGR   L LT  +   
Sbjct: 123 IFLSTIVTEWDLVCKDDWKAPLTTSFFYVGVLLGSFISGQLSDRFGRKNILFLTMAMHTG 182

Query: 446 FGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483
           F  +  F+ +F  F L    VG+   + +   ++L T 
Sbjct: 183 FSFIQVFSVNFEMFTLLYTLVGMGHISNYVAAFVLGTE 220

Sodium-ion independent, medium affinity carnitine transporter. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 746.

Mus musculus (taxid: 10090)

>sp|O08966|S22A1_MOUSE Solute carrier family 22 member 1 OS=Mus musculus GN=Slc22a1 PE=2 SV=2

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 27/226 (11%)

Query: 278 ENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFE------ 331
           E++GEFG +QK  F  + L + + A +Y   +F+   P+H+ CR P ++ L         
Sbjct: 9   EHVGEFGWFQKQAFLLLCLISASLAPIYVGIVFLGFTPDHH-CRSPGVAELSQRCGWSPA 67

Query: 332 QRKLISIPQIGAA-----FDSCRMYAVNYTHLLGSGITKADP---------SWPIVECQH 377
           +    ++P +G+A        C  Y V++     S +   DP           P+  C+H
Sbjct: 68  EELNYTVPGLGSAGEASFLSQCMKYEVDWNQ---STLDCVDPLSSLAANRSHLPLSPCEH 124

Query: 378 GWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALV 437
           GW YD    P ++I TE N VC         Q+    G  +G LV G++ADRFGR   L+
Sbjct: 125 GWVYD---TPGSSIVTEFNLVCGDAWKVDLFQSCVNLGFFLGSLVVGYIADRFGRKLCLL 181

Query: 438 LTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483
           +T LV  + GV+TA    +    L R   G+     +   Y L T 
Sbjct: 182 VTTLVTSLSGVLTAVAPDYTSMLLFRLLQGMVSKGSWVSGYTLITE 227

Translocates a broad array of organic cations with various structures and molecular weights including the model compounds 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), N-1-methylnicotinamide (NMN), 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP), the endogenous compounds choline, guanidine, histamine, epinephrine, adrenaline, noradrenaline and dopamine, and the drugs quinine, and metformin. The transport of organic cations is inhibited by a broad array of compounds like tetramethylammonium (TMA), cocaine, lidocaine, NMDA receptor antagonists, atropine, prazosin, cimetidine, TEA and NMN, guanidine, cimetidine, choline, procainamide, quinine, tetrabutylammonium, and tetrapentylammonium. Translocates organic cations in an electrogenic and pH-independent manner. Translocates organic cations across the plasma membrane in both directions. Transports the polyamines spermine and spermidine. Transports pramipexole across the basolateral membrane of the proximal tubular epithelial cells. The choline transport is activated by MMTS. Regulated by various intracellular signaling pathways including inhibition by protein kinase A activation, and endogenously activation by the calmodulin complex, the calmodulin-dependent kinase II and LCK tyrosine kinase.

Mus musculus (taxid: 10090)

>sp|O77504|S22A1_RABIT Solute carrier family 22 member 1 OS=Oryctolagus cuniculus GN=SLC22A1 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 98/225 (43%), Gaps = 26/225 (11%)

Query: 278 ENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLD------FE 331
           E +GEFG +QK  F  + L +   A +Y   +F+   P+H  CR P +  L        E
Sbjct: 9   EQVGEFGWFQKRTFLFLCLISAILAPIYLGIVFLGFTPDHR-CRSPGVDELSQRCGWSPE 67

Query: 332 QRKLISIPQIGAA----FDSCRMYAVNYTHLLGSGITKADP---------SWPIVECQHG 378
           +    ++P +GA        C  Y V++     S +   DP           P+  CQHG
Sbjct: 68  EELNYTVPGLGATDGAFVRQCMRYEVDWNQ---SSLGCVDPLASLAPNRSHLPLGPCQHG 124

Query: 379 WDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVL 438
           W YD    P ++I TE N VC         Q+    G  +G L  G++ADRFGR   L+L
Sbjct: 125 WVYDT---PGSSIVTEFNLVCADAWKVDLFQSCVNLGFFLGSLGVGYIADRFGRKLCLLL 181

Query: 439 TNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483
           T L+  + GV+TA    +    L R   GL     +   Y L T 
Sbjct: 182 TTLINAVSGVLTAVAPDYTSMLLFRLLQGLVSKGSWMSGYTLITE 226

Translocates a broad array of organic cations with various structures and molecular weights including the model compounds 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), N-1-methylnicotinamide (NMN), 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP), the endogenous compounds choline, guanidine, histamine, epinephrine, adrenaline, noradrenaline and dopamine, and the drugs quinine, and metformin. The transport of organic cations is inhibited by a broad array of compounds like tetramethylammonium (TMA), cocaine, lidocaine, NMDA receptor antagonists, atropine, prazosin, cimetidine, TEA and NMN, guanidine, cimetidine, choline, procainamide, quinine, tetrabutylammonium, and tetrapentylammonium. Translocates organic cations in an electrogenic and pH-independent manner. Translocates organic cations across the plasma membrane in both directions. Transports the polyamines spermine and spermidine. Transports pramipexole across the basolateral membrane of the proximal tubular epithelial cells. The choline transport is activated by MMTS. Regulated by various intracellular signaling pathways including inhibition by protein kinase A activation, and endogenously activation by the calmodulin complex, the calmodulin-dependent kinase II and LCK tyrosine kinase.

Oryctolagus cuniculus (taxid: 9986)

>sp|O75751|S22A3_HUMAN Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 24/227 (10%)

Query: 278 ENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHL--------D 329
           + +GEFGR+Q+ +F  + L     AF++   +F+   P+HYWCR P  + L        +
Sbjct: 9   QRVGEFGRFQRRVFLLLCLTGVTFAFLFVGVVFLGTQPDHYWCRGPSAAALAERCGWSPE 68

Query: 330 FEQRKLISI---PQIGAAFDSCRMY---AVNYTHLLGSGITKADP-------SWPIVECQ 376
            E  +       P+       C+ Y   A N +    S ++ ADP       S P+V C+
Sbjct: 69  EEWNRTAPASRGPEPPERRGRCQRYLLEAANDSASATSALSCADPLAAFPNRSAPLVPCR 128

Query: 377 HGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPAL 436
            GW Y  +   ++TI +E + VC    +    QA    G + G    G+ ADR+GR+   
Sbjct: 129 GGWRYAQA---HSTIVSEFDLVCVNAWMLDLTQAILNLGFLTGAFTLGYAADRYGRIVIY 185

Query: 437 VLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483
           +L+ L   + GVV AF  +F  F + RF  G+     +   Y++ T 
Sbjct: 186 LLSCLGVGVTGVVVAFAPNFPVFVIFRFLQGVFGKGTWMTCYVIVTE 232

Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain.

Homo sapiens (taxid: 9606)

>sp|Q864Z3|S22A6_BOVIN Solute carrier family 22 member 6 OS=Bos taurus GN=SLC22A6 PE=2 SV=2

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 96/211 (45%), Gaps = 23/211 (10%)

Query: 279 NLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISI 338
            LG  GR+QK+    +IL     A     Q F   IP H+ CR P  ++L  +      +
Sbjct: 9   QLGGVGRFQKIQVTLVILPLILLASHNTLQNFTAAIPTHH-CRPPADTNLSEDGDLEAWL 67

Query: 339 PQIGAAF-DSCRMYAV--------NYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYT 389
           P+ G    +SC ++          N T   G+G T+         C HGW YD+S  P +
Sbjct: 68  PRDGQGRPESCLLFTSPQRGPPFPNGTETNGTGATE--------PCPHGWIYDNSTFP-S 118

Query: 390 TIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVV 449
           TI TE + VC+   L   AQ+ +  G ++G + FG +ADR GR   L+   L   + G  
Sbjct: 119 TIVTEWDLVCSHRALRQLAQSLYMMGVLLGAMTFGCLADRLGRRKVLIFNYLQTAVSGTC 178

Query: 450 TAFTKSFWQFALCRFFVGLSFD----NCFTM 476
            AF  +F  +   RF  G+S      NC T+
Sbjct: 179 AAFAPNFPAYCAFRFLSGMSTAGVVLNCMTL 209

Involved in the renal elimination of endogenous and exogenous organic anions. Functions as organic anion exchanger when the uptake of one molecule of organic anion is coupled with an efflux of one molecule of endogenous dicarboxylic acid (glutarate, ketoglutarate, etc). Mediates the sodium-independent uptake of p-aminohippurate (PAH), 2,3-dimercapto-1-propanesulfonic acid (DMPS), cidofovir, adefovir, 9-(2-phosphonylmethoxyethyl) guanine (PMEG), 9-(2-phosphonylmethoxyethyl) diaminopurine (PMEDAP), ochratoxin (OTA), acyclovir (ACV), 3'-azido-3-'deoxythymidine (AZT), cimetidine (CMD), 2,4-dichloro-phenoxyacetate (2,4-D), hippurate (HA), indoleacetate (IA), indoxyl sulfate (IS) and 3-carboxy-4-methyl-5-propyl-2-furanpropionate (CMPF) and edaravone sulfate. PAH uptake is inhibited by p-chloromercuribenzenesulphonate (PCMBS), diethyl pyrocarbonate (DEPC), indomethacin, sulindac, diclofenac, carprofen, okadaic acid, benzothiazolylcysteine (BTC), S-chlorotrifluoroethylcysteine (CTFC), cysteine S-conjugates S-dichlorovinylcysteine (DCVC), furosemide, steviol, phorbol 12-myristate 13-acetate (PMA), calcium ionophore A23187, benzylpenicillin, bumetamide, losartan, probenecid, phenol red, urate, glutarate and alpha-ketoglutarate.

Bos taurus (taxid: 9913)

>sp|O70577|S22A2_MOUSE Solute carrier family 22 member 2 OS=Mus musculus GN=Slc22a2 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 33/241 (13%)

Query: 278 ENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFE------ 331
           E++GEF  +QK  FF + L + A   +Y   +F+   P H+ CR P ++ L         
Sbjct: 9   EHIGEFHLFQKQTFFLLALLSGAFTPIYVGIVFLGFTPNHH-CRSPGVAELSQRCGWSPA 67

Query: 332 QRKLISIPQIGAA-----FDSCRMYAVNYTHLLGSGITKADP---------SWPIVECQH 377
           +    ++P +G+A        C  Y V++     S +   DP           P+  C+H
Sbjct: 68  EELNYTVPGLGSAGEVSFLSQCMRYEVDWNQ---STLDCVDPLSSLAANRSHLPLSPCEH 124

Query: 378 GWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALV 437
           GW YD    P ++I TE N VC    +    Q+    G  +G +  G++ADRFGR   L+
Sbjct: 125 GWVYD---TPGSSIVTEFNLVCAHSWMLDLFQSLVNVGFFIGAVGIGYLADRFGRKFCLL 181

Query: 438 LTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN------RKPFPGCF 491
           +T L+  I GV+ A + ++    + RF  GL     + + YIL T       R+    C+
Sbjct: 182 VTILINAISGVLMAISPNYAWMLVFRFLQGLVSKAGWLIGYILITEFVGLGYRRTVGICY 241

Query: 492 Q 492
           Q
Sbjct: 242 Q 242

Mediates tubular uptake of organic compounds from circulation. Mediates the influx of agmatine, dopamine, noradrenaline (norepinephrine), serotonin, choline, famotidine, ranitidine, histamin, creatinine, amantadine, memantine, acriflavine, 4-[4-(dimethylamino)-styryl]-N-methylpyridinium ASP, amiloride, metformin, N-1-methylnicotinamide (NMN), tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, cisplatin and oxaliplatin. Cisplatin may develop a nephrotoxic action. Transport of creatinine is inhibited by fluoroquinolones such as DX-619 and LVFX. This transporter is a major determinant of the anticancer activity of oxaliplatin and may contribute to antitumor specificity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
195135086	658	GI16685 [Drosophila mojavensis] gi|19391	0.494	0.370	0.545	8e-75
221330907	662	CG42269 [Drosophila melanogaster] gi|220	0.399	0.297	0.621	4e-72
159884099	227	IP12758p [Drosophila melanogaster]	0.391	0.850	0.625	2e-70
307167925	1122	Ectonucleotide pyrophosphatase/phosphodi	0.574	0.252	0.487	3e-70
322785493	590	hypothetical protein SINV_07113 [Solenop	0.529	0.442	0.496	2e-69
332031071	724	Organic cation transporter protein [Acro	0.501	0.341	0.516	2e-69
383856871	631	PREDICTED: organic cation transporter pr	0.476	0.372	0.519	5e-69
307208894	670	Organic cation transporter protein [Harp	0.535	0.394	0.487	3e-68
350420244	644	PREDICTED: organic cation transporter pr	0.507	0.388	0.503	7e-68
357624537	770	hypothetical protein KGM_08556 [Danaus p	0.407	0.261	0.578	2e-67

>gi|195135086|ref|XP_002011966.1| GI16685 [Drosophila mojavensis] gi|193918230|gb|EDW17097.1| GI16685 [Drosophila mojavensis]

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 138/253 (54%), Positives = 176/253 (69%), Gaps = 9/253 (3%)

Query: 228 AESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQ 287
           AE+  +R   G++ L         G  N+E    R+L    MDF +      +GEFGRYQ
Sbjct: 33  AENQPRRRSGGNKDLQ----LDLSGKKNKEQ---RALAAPVMDFDD--LLPLIGEFGRYQ 83

Query: 288 KVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDS 347
           K+LF  MI F+F  AFVYFSQIF+T+IPE +WC VPEL  LD E R  +SIP +   +++
Sbjct: 84  KILFLCMIPFSFFVAFVYFSQIFMTLIPEQHWCHVPELDALDVEARLALSIPMVNGEYNN 143

Query: 348 CRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTW 407
           C MY VNYT L+  G   ADP+WP V+C++GW Y+ ++IPY+T+ATE NWVC    L T+
Sbjct: 144 CYMYDVNYTELMAQGKIMADPNWPRVKCRNGWSYNFTEIPYSTVATEQNWVCDDAALPTY 203

Query: 408 AQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVG 467
           AQ+ FF GAIVGGL+FGW+ADRFGR+PAL+  NL+G + GV TAF K+FWQFA  RFFVG
Sbjct: 204 AQSIFFLGAIVGGLLFGWIADRFGRIPALICCNLMGLLSGVATAFAKNFWQFATMRFFVG 263

Query: 468 LSFDNCFTMMYIL 480
            +FDNCFTMMYIL
Sbjct: 264 FAFDNCFTMMYIL 276

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330907|ref|NP_648019.2| CG42269 [Drosophila melanogaster] gi|220902482|gb|AAF50706.2| CG42269 [Drosophila melanogaster]

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 125/201 (62%), Positives = 154/201 (76%)

Query: 280 LGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIP 339
           +GEFGRYQK+LF  MI F+F  AFVYFSQIF+T+IPE +WC VPEL  LD E R  +SIP
Sbjct: 79  IGEFGRYQKLLFICMIPFSFFVAFVYFSQIFLTLIPEQHWCHVPELDGLDVEARLALSIP 138

Query: 340 QIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVC 399
                +++C MY VNYT +L  G   ADP WP V+C+HGW Y+ ++IPY T+ATE NWVC
Sbjct: 139 MTNGEYNNCYMYDVNYTDILAQGKVMADPKWPQVKCRHGWSYNFTEIPYATVATEQNWVC 198

Query: 400 TQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQF 459
               L T+AQ+ FF GAIVGGL+FGWVADRFGR+PAL+ TN++G + GV TAF  +FW+F
Sbjct: 199 DDAALPTYAQSIFFLGAIVGGLLFGWVADRFGRIPALIGTNMMGLLAGVGTAFVSNFWEF 258

Query: 460 ALCRFFVGLSFDNCFTMMYIL 480
           A+ RFFVG +FDNCFTMMYIL
Sbjct: 259 AIMRFFVGFAFDNCFTMMYIL 279

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|159884099|gb|ABX00728.1| IP12758p [Drosophila melanogaster]

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/200 (62%), Positives = 153/200 (76%)

Query: 281 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQ 340
           GEFGRYQK+LF  MI F+F  AFVYFSQIF+T+IPE +WC VPEL  LD E R  +SIP 
Sbjct: 1   GEFGRYQKLLFICMIPFSFFVAFVYFSQIFLTLIPEQHWCHVPELDGLDVEARLALSIPM 60

Query: 341 IGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCT 400
               +++C MY VNYT +L  G   ADP WP V+C+HGW Y+ ++IPY T+ATE NWVC 
Sbjct: 61  TNGEYNNCYMYDVNYTDILAQGKVMADPKWPQVKCRHGWSYNFTEIPYATVATEQNWVCD 120

Query: 401 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFA 460
              L T+AQ+ FF GAIVGGL+FGWVADRFGR+PAL+ TN++G + GV TAF  +FW+FA
Sbjct: 121 DAALPTYAQSIFFLGAIVGGLLFGWVADRFGRIPALIGTNMMGLLAGVGTAFVSNFWEFA 180

Query: 461 LCRFFVGLSFDNCFTMMYIL 480
           + RFFVG +FDNCFTMMYIL
Sbjct: 181 IMRFFVGFAFDNCFTMMYIL 200

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167925|gb|EFN61301.1| Ectonucleotide pyrophosphatase/phosphodiesterase family member 4 [Camponotus floridanus]

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/287 (48%), Positives = 175/287 (60%), Gaps = 4/287 (1%)

Query: 197 VIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNR 256
           V+P  +     E+S       +E    AD      +        GL  S  SS  G   +
Sbjct: 451 VLPPLFSRGASEISTESEMPPQEKLPTADGRVLGDLSSKDASPDGLSAS-ASSEAGFPMK 509

Query: 257 ESLKS---RSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITV 313
             LKS        R  D        ++GEFG YQ++LF  MI FAF  A+VYFSQIFIT+
Sbjct: 510 NGLKSGDQEDDPERPKDIDFDDLLPHIGEFGTYQRILFVLMIPFAFFVAWVYFSQIFITL 569

Query: 314 IPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIV 373
           +PE +WCRVPEL +L  E+R  ++IP        C MY VNYT ++ +GI  ADPSWP  
Sbjct: 570 VPEEHWCRVPELENLTVEERIALAIPVDENGHSKCTMYDVNYTEIILNGIRDADPSWPTK 629

Query: 374 ECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRV 433
            C HGW+++ +DIPY T+ATEL WVC Q  L T AQ+ FF GAI GGL+FGW+ADR+GR+
Sbjct: 630 GCSHGWEFNFTDIPYETVATELGWVCEQSALPTTAQSVFFVGAIFGGLLFGWIADRYGRI 689

Query: 434 PALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480
           PALV  N+ GF+ GV T    SFW+FALCRFFVG +FDNCFTMMYIL
Sbjct: 690 PALVGANITGFLAGVATVLANSFWEFALCRFFVGFAFDNCFTMMYIL 736

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785493|gb|EFZ12162.1| hypothetical protein SINV_07113 [Solenopsis invicta]

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/266 (49%), Positives = 176/266 (66%), Gaps = 5/266 (1%)

Query: 218 EESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFG 277
           +E    +  ++     ++ + D GL  S  +S+ G  + +  KS S  + + +  +  F 
Sbjct: 4   QEKFPASAGVSRDLTPQDPSPDGGLSAS--ASSDGFSSVKGRKSGSDDQDDQEPKDMDFD 61

Query: 278 E---NLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRK 334
           +   ++GEFG YQ++LF  MI FAF  A+VYFSQIFIT++PE +WCRVPEL +L  E+R 
Sbjct: 62  DLLPHIGEFGTYQRILFVLMIPFAFFVAWVYFSQIFITLVPEEHWCRVPELENLTVEERI 121

Query: 335 LISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATE 394
            ++IP        C MY VNYT +L SGI +ADP WP   C HGW+++ + IPY T+ATE
Sbjct: 122 ALAIPPGEDGLSKCTMYDVNYTEILLSGIRQADPYWPTKSCSHGWEFNFTVIPYETVATE 181

Query: 395 LNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK 454
           L WVC    L T AQ+ FF GAI GGL+FGW+ADR+GR+PALV  N+ G + GV TA   
Sbjct: 182 LGWVCENSALPTTAQSIFFIGAIFGGLIFGWIADRYGRIPALVGANVTGCLAGVATALAG 241

Query: 455 SFWQFALCRFFVGLSFDNCFTMMYIL 480
           SFW+FALCRFFVG +FDNCFTMMYIL
Sbjct: 242 SFWEFALCRFFVGFAFDNCFTMMYIL 267

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031071|gb|EGI70657.1| Organic cation transporter protein [Acromyrmex echinatior]

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/248 (51%), Positives = 168/248 (67%), Gaps = 1/248 (0%)

Query: 234 RNHTGDRGLHNSPRSSTHGSLN-RESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFF 292
           ++ + D GL  S  S    ++  R+S   +    +  D        ++GEFG YQ++LF 
Sbjct: 21  QDASPDGGLSTSASSDGLSTVKGRKSDDDQDDQEQPKDIDFDDLLPHVGEFGTYQRILFV 80

Query: 293 SMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYA 352
            MI FAF  A+VYFSQIFIT++PE +WCRVPEL  L  E+R  ++IP     +  C MY 
Sbjct: 81  LMIPFAFFVAWVYFSQIFITLVPEEHWCRVPELEDLTVEERIALAIPVGEDGYSKCSMYD 140

Query: 353 VNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFF 412
           VNYT +L +GI +A+PSWP  +C +GW+++ +DIPY T+ATEL WVC    L T AQ+ F
Sbjct: 141 VNYTEVLLNGIREANPSWPTKDCSNGWEFNFTDIPYETVATELGWVCEHSALPTTAQSVF 200

Query: 413 FCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDN 472
           F GAI GGL+FGW+ADR+GR+PALV  N+ GF+ GV T    SFW+FALCRFFVG +FDN
Sbjct: 201 FIGAIFGGLIFGWIADRYGRIPALVGANVTGFLAGVATVLAGSFWEFALCRFFVGFAFDN 260

Query: 473 CFTMMYIL 480
           CFTMMYIL
Sbjct: 261 CFTMMYIL 268

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856871|ref|XP_003703930.1| PREDICTED: organic cation transporter protein-like [Megachile rotundata]

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 122/235 (51%), Positives = 163/235 (69%)

Query: 246 PRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVY 305
           P  +     N E+  S++    +MD         +GEFG YQK+LF  MI FA   A+VY
Sbjct: 13  PEDAQKDCRNVETRVSKNDKEESMDLDFDELLPYVGEFGLYQKILFLLMIPFASFVAWVY 72

Query: 306 FSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITK 365
           FSQIFIT++P+ YWC VPEL +L  ++R  ++IP     +  C MY VNYT +L +G   
Sbjct: 73  FSQIFITIVPDGYWCLVPELENLTVDERLSLAIPFGSNGYSKCSMYDVNYTEILLNGGRS 132

Query: 366 ADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGW 425
            DP+WP   CQHGW+++++D+PY ++A+EL WVC  D+L T AQ+ FF GAI GGL+FGW
Sbjct: 133 PDPTWPTKSCQHGWEFNYTDVPYASVASELGWVCEYDSLPTIAQSIFFIGAIFGGLIFGW 192

Query: 426 VADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480
           +AD++GR+PAL+  NL GF+ GV TAF+ +FWQF LCRFFVG +FDNCFTMMYIL
Sbjct: 193 IADQYGRIPALIGANLTGFVAGVATAFSNNFWQFTLCRFFVGFAFDNCFTMMYIL 247

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208894|gb|EFN86109.1| Organic cation transporter protein [Harpegnathos saltator]

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 133/273 (48%), Positives = 172/273 (63%), Gaps = 9/273 (3%)

Query: 208 ELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRR 267
           +L   D +  + S    D+ +E +   +    +   N  R S      +E  K       
Sbjct: 15  DLGSKDTSPDDLSVSCRDSSSEGFPVPSEKCVKTRRNGHRPSDGQQEAQEQPK------- 67

Query: 268 NMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSH 327
           +MDF       ++GEFG YQ++LF  MI FAF  A+VYFSQIFIT++PE +WCRVPEL +
Sbjct: 68  DMDFDE--LLPHVGEFGTYQRILFIMMIPFAFFVAWVYFSQIFITLVPEQHWCRVPELEN 125

Query: 328 LDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIP 387
           L   +R  ++IP     +  C MY VNYT LL +G  +ADPSW    C HGW+++ +DIP
Sbjct: 126 LTVAERIALAIPPDEHGYSRCEMYDVNYTELLLNGTREADPSWRTKGCTHGWEFNFTDIP 185

Query: 388 YTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG 447
           Y T+ATEL WVC    L T AQ+ FF GAI GGL+FGW+ADR+GR+PALV  N+ GF+ G
Sbjct: 186 YETVATELGWVCENSALPTTAQSVFFVGAIFGGLIFGWIADRYGRIPALVGANVTGFLAG 245

Query: 448 VVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480
           V T    SFW+FALCRFFVG +FDNCFTMMYIL
Sbjct: 246 VATVLAGSFWEFALCRFFVGFAFDNCFTMMYIL 278

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420244|ref|XP_003492447.1| PREDICTED: organic cation transporter protein-like [Bombus impatiens]

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 127/252 (50%), Positives = 170/252 (67%), Gaps = 2/252 (0%)

Query: 229 ESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQK 288
           E +    H  DR  +  P  ++     RE+ +S     +++DF        +G+FG YQK
Sbjct: 10  EKFGTSVHLSDRENNAMPCRNSMNPQTREADRSGKEETKDIDFDE--LLPYVGDFGLYQK 67

Query: 289 VLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSC 348
           +LF  MI FA   A+VYFSQIFIT+IP+ +WC VPEL +L   +R  ++IP     +  C
Sbjct: 68  ILFILMIPFASFVAWVYFSQIFITLIPDDHWCWVPELQNLTANERLSLAIPVNREGYSRC 127

Query: 349 RMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWA 408
            MY VNYT +L +G   +DPSWP  +CQ GW+++++ +PY ++A+EL WVC  D L T A
Sbjct: 128 SMYDVNYTEILLNGSLVSDPSWPTKDCQQGWEFNYTTVPYASVASELGWVCQYDALPTIA 187

Query: 409 QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGL 468
           Q+ FF GAI GGL+FGWVAD++GR+PAL+  NL+GF+ GV TAFT SFWQF LCRFFVG 
Sbjct: 188 QSIFFIGAIFGGLIFGWVADQYGRIPALIGANLMGFLAGVATAFTVSFWQFTLCRFFVGF 247

Query: 469 SFDNCFTMMYIL 480
           +FDNCFTMMYIL
Sbjct: 248 AFDNCFTMMYIL 259

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624537|gb|EHJ75270.1| hypothetical protein KGM_08556 [Danaus plexippus]

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 118/204 (57%), Positives = 151/204 (74%), Gaps = 3/204 (1%)

Query: 280 LGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIP 339
           +GEFG YQK+LF  MI FAF  + VYFSQIF+T++PE +WC +PEL++L  E+R+ ++IP
Sbjct: 66  IGEFGWYQKILFLLMIPFAFFVSIVYFSQIFMTIVPEQHWCWIPELANLTAEERRALAIP 125

Query: 340 QIGAA---FDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELN 396
                    D C MY+ +++  L  G T  D  W I+ C HGW+Y+ SD+PY TIA++L+
Sbjct: 126 AKSDGPFTHDRCNMYSADFSLALEQGRTTPDDEWKIIPCSHGWEYNRSDVPYETIASQLD 185

Query: 397 WVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSF 456
           WVC +D  +  AQA FFCGAIVGGLVFGW+AD++GR+PALV TNLVGF  GV TAF  +F
Sbjct: 186 WVCDKDNYAATAQAIFFCGAIVGGLVFGWIADKYGRIPALVGTNLVGFAAGVATAFCNTF 245

Query: 457 WQFALCRFFVGLSFDNCFTMMYIL 480
           W F LCRF VGL+FDNCFTMMYIL
Sbjct: 246 WTFTLCRFLVGLAFDNCFTMMYIL 269

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
FB|FBgn0259164	662	CG42269 [Drosophila melanogast	0.407	0.303	0.621	9.9e-71
FB|FBgn0035647	706	CG10486 [Drosophila melanogast	0.466	0.325	0.390	2.6e-40
FB|FBgn0035645	540	CG5592 [Drosophila melanogaste	0.401	0.366	0.415	2.6e-38
FB|FBgn0032879	674	CG9317 [Drosophila melanogaste	0.403	0.295	0.366	5.8e-28
FB|FBgn0038720	585	CG6231 [Drosophila melanogaste	0.363	0.305	0.373	1.4e-24
ZFIN|ZDB-GENE-040426-1311	546	slc22a7b "solute carrier famil	0.399	0.360	0.336	5.6e-24
UNIPROTKB|E1BX06	542	SLC22A7 "Uncharacterized prote	0.377	0.343	0.350	2.5e-21
FB|FBgn0033778	604	CG3790 [Drosophila melanogaste	0.296	0.241	0.317	7e-21
FB|FBgn0038719	545	CG16727 [Drosophila melanogast	0.373	0.337	0.333	3.5e-20
FB|FBgn0038715	541	CG7333 [Drosophila melanogaste	0.377	0.343	0.315	4.4e-20

FB|FBgn0259164 CG42269 [Drosophila melanogaster (taxid:7227)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 125/201 (62%), Positives = 154/201 (76%)

Query:   280 LGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIP 339
             +GEFGRYQK+LF  MI F+F  AFVYFSQIF+T+IPE +WC VPEL  LD E R  +SIP
Sbjct:    79 IGEFGRYQKLLFICMIPFSFFVAFVYFSQIFLTLIPEQHWCHVPELDGLDVEARLALSIP 138

Query:   340 QIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVC 399
                  +++C MY VNYT +L  G   ADP WP V+C+HGW Y+ ++IPY T+ATE NWVC
Sbjct:   139 MTNGEYNNCYMYDVNYTDILAQGKVMADPKWPQVKCRHGWSYNFTEIPYATVATEQNWVC 198

Query:   400 TQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQF 459
                 L T+AQ+ FF GAIVGGL+FGWVADRFGR+PAL+ TN++G + GV TAF  +FW+F
Sbjct:   199 DDAALPTYAQSIFFLGAIVGGLLFGWVADRFGRIPALIGTNMMGLLAGVGTAFVSNFWEF 258

Query:   460 ALCRFFVGLSFDNCFTMMYIL 480
             A+ RFFVG +FDNCFTMMYIL
Sbjct:   259 AIMRFFVGFAFDNCFTMMYIL 279

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0035647 CG10486 [Drosophila melanogaster (taxid:7227)]

 Score = 434 (157.8 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 94/241 (39%), Positives = 135/241 (56%)

Query:   249 STHGSLNRESLKSRSLTRRNM---DFVNRGFGENL---GEFGRYQKVLFFSMILFAFAEA 302
             S+HG    +     SL RR+    D+++  F + L   G+FGR+Q  LF  MI F F  A
Sbjct:    68 SSHGFFWGKKKSETSLPRRSWETDDYID--FDDLLPMIGQFGRFQIRLFLFMIPFCFITA 125

Query:   303 FVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIP-QIGAAFDSCRMYAVNYT--HLL 359
             FVY  QIF+ + P  Y+C VPEL H   E RK +SIP +   ++  CRMY  NYT  H  
Sbjct:   126 FVYLGQIFMCLTPPKYYCYVPELLHTPVELRKELSIPKEKDGSYSRCRMYNTNYTKIHFA 185

Query:   360 GSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVG 419
              +     + S P + C+ G+ ++     + +   E  W+C  D  +T+AQ  FF G+I+G
Sbjct:   186 ENPSAYINTSLPTIPCKKGYVFEQEGRAFESATMEFGWLCDDDKYATYAQIIFFLGSILG 245

Query:   420 GLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYI 479
             GL +G  AD  GRV ALV +  +  +  + T+ +  F+ FA+ RF VG S+D CFTM+YI
Sbjct:   246 GLAYGHFADHCGRVAALVSSCFLALVGSLATSMSTDFFTFAISRFLVGASYDTCFTMVYI 305

Query:   480 L 480
             L
Sbjct:   306 L 306

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0035645 CG5592 [Drosophila melanogaster (taxid:7227)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 84/202 (41%), Positives = 118/202 (58%)

Query:   280 LGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIP 339
             +G+FG +QK L F M+  AF  AF YF QIF+ ++P+++WCRV EL  L   ++K   IP
Sbjct:    16 IGDFGPFQKRLLFWMMPAAFLFAFTYFGQIFMILLPKNHWCRVRELEGLPESEQKNRGIP 75

Query:   340 QI-GAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWV 398
             +    +F++C MY V Y     +    A+ +   + C +GW YD  ++PY +IATE NWV
Sbjct:    76 KKQDGSFENCFMYNVPYD---SNATNDANQTRSPIPCNNGWIYDRKEVPYESIATEYNWV 132

Query:   399 CTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQ 458
             C +    T++   +F G IVG L FG++ D  GR+PAL L N    I G V+   K F  
Sbjct:   133 CDKRDFGTYSVVVYFVGCIVGCLCFGFITDHSGRLPALFLANSCSMIGGCVSVVCKDFPC 192

Query:   459 FALCRFFVGLSFDNCFTMMYIL 480
             FA  RF  GLS + CF  +YIL
Sbjct:   193 FAASRFVAGLSMNYCFVPIYIL 214

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0032879 CG9317 [Drosophila melanogaster (taxid:7227)]

 Score = 335 (123.0 bits), Expect = 5.8e-28, P = 5.8e-28
 Identities = 78/213 (36%), Positives = 119/213 (55%)

Query:   280 LGEFGRYQKVLFFSMILFAFAEA-FVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISI 338
             +GEFG+YQK+L F + L A     F  F+Q+F+   P+ YWCR+PEL  L  EQRK +SI
Sbjct:    43 IGEFGKYQKLLVFGICLPACIPCGFCAFNQLFMADTPDDYWCRIPELLDLPLEQRKSLSI 102

Query:   339 PQI----GAAFDSCRMYAVNYTHLLGSG----ITKADP--SWPIVECQHGWDYDHSDIPY 388
             P+        +  C  Y VN+T LL SG    +T  +P  SWP+++C  GW+Y+ S + +
Sbjct:   103 PKELDNDELVYSKCYTYGVNWTQLLESGEEDDLTTMEPNASWPLIKCPQGWEYNTS-VVW 161

Query:   389 TTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG- 447
             ++I  + + VC QD   T   A    G  VG  +FG + DR GR  +  +  L   + G 
Sbjct:   162 SSIVIDFDLVCDQDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVC-LATLLAGS 220

Query:   448 VVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480
             ++T+ +K FW +A  R  VGL+    + + +I+
Sbjct:   221 LMTSLSKDFWTWAGSRVIVGLTIPAVYQIPFII 253

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0038720 CG6231 [Drosophila melanogaster (taxid:7227)]

 Score = 305 (112.4 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 77/206 (37%), Positives = 114/206 (55%)

Query:   281 GEFGRYQKVLFFSMILFAFAEAFV---YFSQIFITVIPEHYWCRVPELSHLDFEQRKLIS 337
             G+F RYQ   F  + LF F    V   YF+Q  I+ +P+H WC   +L ++ +++     
Sbjct:    11 GDFNRYQ---FMILALFGFINIIVSMHYFTQTVISFVPDH-WCYHDKLVNMTYKE----- 61

Query:   338 IPQIGAAFD--SC-RMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATE 394
             I +I A F+  SC R+  +N     G  +T +  +     C+  W Y++ D  Y ++ TE
Sbjct:    62 IGEIYAQFENPSCTRLDDIN-----GHNVTVSSKA-----CEK-WIYNY-DFGYRSMNTE 109

Query:   395 LNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK 454
             LNWVC     +   Q+ FF G++VG L +G ++D+ GRVPAL+L+N  GF     T FTK
Sbjct:   110 LNWVCDSAYKARIGQSLFFIGSVVGTLFYGLLSDKIGRVPALILSNFCGFAGDFSTIFTK 169

Query:   455 SFWQFALCRFFVGLSFDNCFTMMYIL 480
             S   F LCRF  GL+ D  F +MYI+
Sbjct:   170 SVATFTLCRFIPGLAADTNFYLMYII 195

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-040426-1311 slc22a7b "solute carrier family 22 (organic anion transporter), member 7b" [Danio rerio (taxid:7955)]

 Score = 299 (110.3 bits), Expect = 5.6e-24, P = 5.6e-24
 Identities = 70/208 (33%), Positives = 108/208 (51%)

Query:   280 LGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELS------HLDFEQR 333
             +G FG+YQ  L   +++        +    FI  IP H+ C +  LS      +L  E+R
Sbjct:    10 VGGFGKYQFCLMALLVIPRVTLPCHFLLNNFIAAIPSHH-CDISSLSADGIFGNLTQEER 68

Query:   334 KLISIP-QIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIA 392
               + +P Q      SC M++     LL +  + +D   P+VECQ+GW +D+S    +T+A
Sbjct:    69 LTVGVPAQEDGTPVSCHMFSHPQFQLLINSSSSSD--LPVVECQNGWRFDNSTFK-STLA 125

Query:   393 TELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF 452
             TE + VC +  L+      FF G ++G  +FGW+ DRFGR   L+L  L+   FGV +AF
Sbjct:   126 TEFDLVCDRRGLNKATATIFFAGVMIGAAIFGWLTDRFGRKRMLMLAYLISITFGVASAF 185

Query:   453 TKSFWQFALCRFFVGLSFDNCFTMMYIL 480
              +SF  FA+ RFF G+       +  +L
Sbjct:   186 AQSFIVFAIMRFFTGMGLTGISIISIVL 213

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E1BX06 SLC22A7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 276 (102.2 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 68/194 (35%), Positives = 104/194 (53%)

Query:   281 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVP---ELSHLDFEQRKLIS 337
             G FGR+Q ++   + L        +    F+   P H+ C +P   E  +L  E+  LIS
Sbjct:    11 GGFGRFQILILLILCLPRINLPMHFLLHNFLAATPSHH-CAIPHQEEFVNLTTEEILLIS 69

Query:   338 IP-QIGAAFDSCRMYAVNYTHLL-GSGITKADPSWPIVECQHGWDYDHSDIPYTTIATEL 395
             IP +    F SC M++    HLL  S +   + S    +CQHGW YDHS    +TI+TE 
Sbjct:    70 IPREPDGTFRSCEMFSQPQFHLLLNSSLQPYNDS-VTQDCQHGWVYDHSQFT-STISTEW 127

Query:   396 NWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKS 455
             + VC Q  L+     FFF G  +G +VFG+++DRFGR   L+L+ +   IFG+++A + S
Sbjct:   128 DLVCEQRGLNQATATFFFIGVTMGAVVFGYLSDRFGRKSILMLSLVCSVIFGMLSACSVS 187

Query:   456 FWQFALCRFFVGLS 469
             +   A+ R   G++
Sbjct:   188 YSMLAVTRTLTGVA 201

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035634 "response to stilbenoid" evidence=IEA

FB|FBgn0033778 CG3790 [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 7.0e-21, Sum P(2) = 7.0e-21
 Identities = 52/164 (31%), Positives = 78/164 (47%)

Query:   334 KLISIPQI-GAAFDSCRMYAVNYTHLL---------------GSGITKADP-SWPIVECQ 376
             K +SIP+    A+  C MY+ NYT ++                  + K  P +  +V CQ
Sbjct:    67 KNLSIPRNRNGAYAECSMYSRNYTDIVRYLEYRPPPDLLRQQAEDLLKLQPDTTQVVPCQ 126

Query:   377 HGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPAL 436
             HGW YD S I  +T+  E N VC +  L T A   F  G ++G  VFG++ D +GR P+ 
Sbjct:   127 HGWHYDKS-IYSSTVVQEWNLVCDRSFLVTLALVVFGVGGLLGNYVFGYLVDLWGRRPSF 185

Query:   437 VLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480
                 L+  I    +AF  +++ +   RF VGL+        Y+L
Sbjct:   186 YAYLLLEIIACAASAFAWNYYTWLGLRFVVGLTVPAILASPYVL 229

GO:0015226 "carnitine transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0038719 CG16727 [Drosophila melanogaster (taxid:7227)]

 Score = 266 (98.7 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 69/207 (33%), Positives = 106/207 (51%)

Query:   278 ENLGEFGRYQKVLFFSMILFAFAE---AFVYFSQIFITVIPEHYWCRVPELSHLDF-EQR 333
             E  G FGR+Q V+   +IL+ +     +  YFSQ  IT  PEH WC   +L  L   E R
Sbjct:     8 EKCGNFGRFQFVI---LILYGYTNILSSLHYFSQTLITFTPEH-WCSHDDLMGLGAAELR 63

Query:   334 KLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIAT 393
              + S      +  SC + +     + G+G+   +       CQ  W ++  +  Y ++ T
Sbjct:    64 SIYS----NVSHPSCTLLS---EVINGTGVASEE------SCQD-WIFEREN-GYESLTT 108

Query:   394 ELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT 453
             EL WVC +       Q+FFF G++VG + FG+++D  GR+PA+++  L G     +T+F 
Sbjct:   109 ELKWVCDKSHQPAVGQSFFFLGSVVGTISFGFLSDHIGRLPAMLMAALSGATGDFITSFV 168

Query:   454 KSFWQFALCRFFVGLSFDNCFTMMYIL 480
              +   FA  RF  GLS D  + +MYIL
Sbjct:   169 HTLPWFAFSRFVSGLSTDTMYYLMYIL 195

GO:0015101 "organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0038715 CG7333 [Drosophila melanogaster (taxid:7227)]

 Score = 265 (98.3 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 65/206 (31%), Positives = 110/206 (53%)

Query:   278 ENLGEFGRYQKVLFFSMILFAFAE---AFVYFSQIFITVIPEHYWCRVPELSHLDFEQRK 334
             +  G +GR+Q ++   ++L+ +     +  YFSQ  IT  PEH WC   +L+ L  E  +
Sbjct:     8 DKCGNYGRFQVMI---LLLYGYTNILGSLHYFSQTLITFTPEH-WCFHADLNGLSVEGIR 63

Query:   335 LISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATE 394
              +    I A+  +  +  VN     G+G+   +      +C++ W ++     Y +I TE
Sbjct:    64 SV-YENISASSCTPLLGVVN-----GTGVVSTNR-----KCRN-WIFNRES-GYESITTE 110

Query:   395 LNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK 454
             L WVC +       Q+FFF G++VG ++FG+++D+ GR+P+L++  L G     +T+F  
Sbjct:   111 LKWVCDKSHHPAVGQSFFFMGSVVGTIIFGYLSDQVGRLPSLLMATLCGATGDFITSFVH 170

Query:   455 SFWQFALCRFFVGLSFDNCFTMMYIL 480
             +   FA  RF  GLS D  + +MYIL
Sbjct:   171 TLPWFAFSRFMSGLSTDTMYYLMYIL 196

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	493
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-24
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	9e-12
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-10
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-10
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-09
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-09
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	5e-07
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-05
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	2e-05
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	4e-05
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	8e-05
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-04
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	1e-04
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-04
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-04
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	0.003
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	0.003
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	0.003
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	0.004

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  104 bits (261), Expect = 6e-24
 Identities = 68/210 (32%), Positives = 99/210 (47%), Gaps = 12/210 (5%)

Query: 281 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVP---ELSHLDFEQRKLIS 337
           GEFG +Q+  F  + L     AF +   +F+   PEH  CR+P    LS        L  
Sbjct: 1   GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEH-HCRLPDAANLSSRCELNLTLPR 59

Query: 338 IPQIGAAFDSCRMYAV---NYTHLLGSGITKA-DPSWPIVE-CQHGWDYDHSDIPYTTIA 392
           +P      +SC  + V       LLG    K  D      E C  GW+Y + D   +TI 
Sbjct: 60  LPD--GRPESCLRFMVDQWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSY-DTFSSTIV 116

Query: 393 TELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF 452
           TE + VC         Q+ FF G ++G  VFG+++DRFGR   L+L+ LV  + GV+TAF
Sbjct: 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF 176

Query: 453 TKSFWQFALCRFFVGLSFDNCFTMMYILET 482
           + ++  F + R  VG+     +    +L T
Sbjct: 177 SPNYTVFLVFRLLVGMGIGGIWVQAVVLNT 206

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 66.6 bits (163), Expect = 9e-12
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 61  NWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS 120
           + VC         Q+ FF G ++G  VFG+++DRFGR   L+L+ LV  + GV+TAF+ +
Sbjct: 120 DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN 179

Query: 121 FWQFALCRFFVGLS 134
           +  F + R  VG+ 
Sbjct: 180 YTVFLVFRLLVGMG 193

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 80  GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLS----F 135
           G   G L FG +ADR GR   L+ + L+  +F ++ A   +  Q  + RF  GL      
Sbjct: 64  GMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLM 123

Query: 136 DNCFTMM 142
            N   ++
Sbjct: 124 PNLNALV 130

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 415 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLS----F 470
           G   G L FG +ADR GR   L+ + L+  +F ++ A   +  Q  + RF  GL      
Sbjct: 64  GMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLM 123

Query: 471 DNCFTMM 477
            N   ++
Sbjct: 124 PNLNALV 130

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK--SFWQF 459
             LS    + F  G ++G L  G + DRFGR  +L++ N++  I  ++  F K  SF+  
Sbjct: 45  TVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYML 104

Query: 460 ALCRFFVGLS--FDNCFTMMYILE 481
            + R  VGL     +    MYI E
Sbjct: 105 IVGRVIVGLGVGGISVLVPMYISE 128

Length = 449

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 22/88 (25%), Positives = 40/88 (45%)

Query: 67  DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFAL 126
            + +    + F  G  +G L+ G+++DRFGR   L+L  L+  +  ++ AF  S W   +
Sbjct: 33  ASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLV 92

Query: 127 CRFFVGLSFDNCFTMMYILGMPIYKTRN 154
            RF +GL     +     L    +  + 
Sbjct: 93  GRFLLGLGGGALYPAAAALIAEWFPPKE 120

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 67  DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK--SFWQF 124
             LS    + F  G ++G L  G + DRFGR  +L++ N++  I  ++  F K  SF+  
Sbjct: 45  TVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYML 104

Query: 125 ALCRFFVGLS--FDNCFTMMYI 144
            + R  VGL     +    MYI
Sbjct: 105 IVGRVIVGLGVGGISVLVPMYI 126

Length = 449

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 386 IPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFI 445
                +A +L       + +    + F  G  +G L+ G+++DRFGR   L+L  L+  +
Sbjct: 20  PALPLLAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL 76

Query: 446 FGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480
             ++ AF  S W   + RF +GL     +     L
Sbjct: 77  GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAAL 111

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 390 TIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVV 449
            +A +L       T        F  G  +   + G ++DRFGR   L++  L+  +  ++
Sbjct: 22  YLAEDLGI---SPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLL 78

Query: 450 TAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480
             F  S W   + R   GL     F     L
Sbjct: 79  LLFASSLWLLLVLRVLQGLGGGALFPAAAAL 109

Length = 346

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 51  LSTWALTPQLNWVCTQD-----TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTN 105
           L    L P L     +D     T        F  G  +   + G ++DRFGR   L++  
Sbjct: 10  LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGL 69

Query: 106 LVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 145
           L+  +  ++  F  S W   + R   GL     F     L
Sbjct: 70  LLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAAL 109

Length = 346

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 386 IPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNL---V 442
             +    T  N      +L     + F  G  +G L  GW++DRFGR  +L++  L   +
Sbjct: 54  PAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVI 113

Query: 443 GFIFGVVTAFTKSFWQFALCRFFVGLSFD--NCFTMMYILE 481
           G I   + AF  S     + R  +G+     +    MY+ E
Sbjct: 114 GAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSE 154

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 80  GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCF 139
           G ++   + G + DRFGR P L++   +  +   + A + +     + RF  G       
Sbjct: 10  GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69

Query: 140 TM 141
             
Sbjct: 70  VA 71

Length = 141

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 415 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCF 474
           G ++   + G + DRFGR P L++   +  +   + A + +     + RF  G       
Sbjct: 10  GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69

Query: 475 TM 476
             
Sbjct: 70  VA 71

Length = 141

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 11/80 (13%)

Query: 55  ALTP-QLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGV 113
            L   Q+ W  +   L          G + G L+ G +ADR GR   L+++  +  +F +
Sbjct: 46  GLDVAQMGWAFSAGIL----------GLLPGALLGGRLADRIGRKRILIVSVALFGLFSL 95

Query: 114 ITAFTKSFWQFALCRFFVGL 133
            TA    F    + R   G+
Sbjct: 96  ATAQAWDFPSLLVARLLTGV 115

Length = 406

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 64  CTQDTLSTWAQAFFFC----GAIVGGLVFGWVADRFGRVPALVLTNL---VGFIFGVITA 116
              D+ S+            G  +G L  GW++DRFGR  +L++  L   +G I   + A
Sbjct: 63  ANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA 122

Query: 117 FTKSFWQFALCRFFVGLSFD--NCFTMMYI 144
           F  S     + R  +G+     +    MY+
Sbjct: 123 FALSVEMLIVGRVLLGIGVGIASALVPMYL 152

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 415 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGL 468
           GA++GG     +ADR GR   L+++  +  +F + TA    F    + R   G+
Sbjct: 66  GALLGG----RLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGV 115

Length = 406

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 31/71 (43%)

Query: 63  VCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFW 122
           +C  D+         + G +VG   +G +AD+ GR   L++   V   F   ++F + + 
Sbjct: 197 LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYG 256

Query: 123 QFALCRFFVGL 133
            F  CR   G 
Sbjct: 257 FFLFCRLLSGF 267

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 31/71 (43%)

Query: 398 VCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFW 457
           +C  D+         + G +VG   +G +AD+ GR   L++   V   F   ++F + + 
Sbjct: 197 LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYG 256

Query: 458 QFALCRFFVGL 468
            F  CR   G 
Sbjct: 257 FFLFCRLLSGF 267

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 37  TLSTWLNWVCTQDT---LSTWALTPQLNWVCT-QDTLSTWAQAFFFCGAIVGGLVFGWVA 92
           T+  WL +         L+ W   P+L        +L+    A F  G ++G ++FGW+A
Sbjct: 252 TVLLWLLYFMLLVGVYFLTNW--LPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLA 309

Query: 93  DRFGRVPALVLTNLVGFIFGVITAFT-KSFWQFALCRFFVGLSFDNCFTMMYILGMPIYK 151
           DR G     +L  L+G +F V+   T  S     L     G   +   + +Y L    Y 
Sbjct: 310 DRLGPRVTALLL-LLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYP 368

Query: 152 TRN 154
           T  
Sbjct: 369 TAI 371

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 4/122 (3%)

Query: 37  TLSTWLNWVC---TQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVAD 93
            L   L +         L T+        +      +    + F  G I+G L+ G ++D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236

Query: 94  RFGR-VPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKT 152
           R GR    L++  L+  +  ++ A   S     +    +G      F  +  L   +   
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296

Query: 153 RN 154
             
Sbjct: 297 EA 298

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGR-VPALVLTNLVGFIFGVVTAFTKSFWQFAL 461
             +    + F  G I+G L+ G ++DR GR    L++  L+  +  ++ A   S     +
Sbjct: 211 AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLV 270

Query: 462 CRFFVGLSFDNCFTMMYIL 480
               +G      F  +  L
Sbjct: 271 ALLLLGFGLGFAFPALLTL 289

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 20/80 (25%), Positives = 33/80 (41%)

Query: 401 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFA 460
             +L+    A F  G ++G ++FGW+ADR G     +L  L      +V +   S     
Sbjct: 283 SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLL 342

Query: 461 LCRFFVGLSFDNCFTMMYIL 480
           L     G   +   + +Y L
Sbjct: 343 LLGAIAGFFVNGGQSGLYAL 362

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 61  NWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF--T 118
            +V     L +         AI+G  ++ W+A RFG+    +L  L+  I  V+  F   
Sbjct: 250 TYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPP 309

Query: 119 KSFWQFALCRFFVGLSFDNCFTMMYIL 145
            S W F +     G+       + + +
Sbjct: 310 GSLWLFLVLVVLAGIGLGLATLLPWAM 336

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 396 NWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF--T 453
            +V     L +         AI+G  ++ W+A RFG+    +L  L+  I  V+  F   
Sbjct: 250 TYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPP 309

Query: 454 KSFWQFALCRFFVGLSFDNCFTMMYILET 482
            S W F +     G+       + + +  
Sbjct: 310 GSLWLFLVLVVLAGIGLGLATLLPWAMLA 338

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 65  TQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQF 124
            Q TL+      +  G   G L++G ++DR+GR P L+L   +  +  +  A + +    
Sbjct: 42  VQMTLTL-----YLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL 96

Query: 125 ALCRFFVGL 133
            + RF    
Sbjct: 97  LVLRFVQAF 105

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	493
TIGR00898	505	2A0119 cation transport protein.	99.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
KOG0253|consensus	528		99.97
KOG0255|consensus	521		99.96
KOG0569|consensus	485		99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.94
KOG0254|consensus	513		99.94
PRK10642	490	proline/glycine betaine transporter; Provisional	99.93
KOG0252|consensus	538		99.93
TIGR00891	405	2A0112 putative sialic acid transporter.	99.92
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.92
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.91
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.91
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.9
PRK09952	438	shikimate transporter; Provisional	99.9
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.9
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.88
PRK12307	426	putative sialic acid transporter; Provisional	99.88
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.88
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.88
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.88
PRK03545	390	putative arabinose transporter; Provisional	99.87
TIGR00895	398	2A0115 benzoate transport.	99.87
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.86
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.86
PRK15075	434	citrate-proton symporter; Provisional	99.86
PRK03699	394	putative transporter; Provisional	99.86
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.86
TIGR00893	399	2A0114 d-galactonate transporter.	99.86
PRK09705	393	cynX putative cyanate transporter; Provisional	99.85
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.84
TIGR00900	365	2A0121 H+ Antiporter protein.	99.84
PRK11663	434	regulatory protein UhpC; Provisional	99.84
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.84
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.83
PLN00028	476	nitrate transmembrane transporter; Provisional	99.83
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.83
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.83
PRK10091	382	MFS transport protein AraJ; Provisional	99.83
PRK10133	438	L-fucose transporter; Provisional	99.83
PRK03893	496	putative sialic acid transporter; Provisional	99.83
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.83
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.82
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.82
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.82
PRK09874	408	drug efflux system protein MdtG; Provisional	99.82
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.82
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.82
PRK12382	392	putative transporter; Provisional	99.82
PRK05122	399	major facilitator superfamily transporter; Provisi	99.82
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.81
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.81
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.8
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.8
PRK11043	401	putative transporter; Provisional	99.8
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.79
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.79
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.79
PRK03633	381	putative MFS family transporter protein; Provision	99.78
PRK10504	471	putative transporter; Provisional	99.77
PRK10489	417	enterobactin exporter EntS; Provisional	99.76
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.76
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.76
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.75
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.75
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.75
TIGR00901	356	2A0125 AmpG-related permease.	99.74
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.74
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.72
KOG2532|consensus	466		99.72
PRK15011	393	sugar efflux transporter B; Provisional	99.72
KOG2533|consensus	495		99.71
KOG1330|consensus	493		99.71
PRK10054	395	putative transporter; Provisional	99.7
PRK11010	491	ampG muropeptide transporter; Validated	99.69
TIGR00898	505	2A0119 cation transport protein.	99.69
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.69
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.69
TIGR00805	633	oat sodium-independent organic anion transporter.	99.68
PTZ00207	591	hypothetical protein; Provisional	99.68
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.67
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.66
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.65
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.65
PRK09528	420	lacY galactoside permease; Reviewed	99.65
KOG2615|consensus	451		99.65
KOG3764|consensus	464		99.64
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.63
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.61
KOG2504|consensus	509		99.59
PRK11902	402	ampG muropeptide transporter; Reviewed	99.58
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.56
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.54
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.52
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.5
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.48
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.42
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.41
PRK09669	444	putative symporter YagG; Provisional	99.38
PF13347	428	MFS_2: MFS/sugar transport protein	99.37
PRK10642	490	proline/glycine betaine transporter; Provisional	99.35
PRK10429	473	melibiose:sodium symporter; Provisional	99.31
KOG0255|consensus	521		99.28
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.26
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.23
PRK09848	448	glucuronide transporter; Provisional	99.21
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.2
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.17
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.15
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.15
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.06
PRK11462	460	putative transporter; Provisional	99.03
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.02
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.98
KOG4686|consensus	459		98.93
COG2211	467	MelB Na+/melibiose symporter and related transport	98.88
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.8
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.8
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.77
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.75
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.62
PRK15011	393	sugar efflux transporter B; Provisional	98.62
PRK12307	426	putative sialic acid transporter; Provisional	98.55
TIGR00891	405	2A0112 putative sialic acid transporter.	98.55
KOG2325|consensus	488		98.53
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.49
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.48
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.48
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.48
KOG2563|consensus	480		98.47
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.46
KOG3626|consensus	735		98.45
PRK09528	420	lacY galactoside permease; Reviewed	98.44
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.44
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.44
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.44
PRK05122	399	major facilitator superfamily transporter; Provisi	98.43
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.43
KOG0254|consensus	513		98.41
KOG2816|consensus	463		98.35
PRK12382	392	putative transporter; Provisional	98.35
PRK03699	394	putative transporter; Provisional	98.33
PRK09874	408	drug efflux system protein MdtG; Provisional	98.33
TIGR00895	398	2A0115 benzoate transport.	98.32
PRK03893	496	putative sialic acid transporter; Provisional	98.29
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.29
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.29
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.28
PRK09705	393	cynX putative cyanate transporter; Provisional	98.26
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.26
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.26
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.25
PRK11663	434	regulatory protein UhpC; Provisional	98.24
PLN00028	476	nitrate transmembrane transporter; Provisional	98.23
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.23
PRK03545	390	putative arabinose transporter; Provisional	98.23
PRK09952	438	shikimate transporter; Provisional	98.22
KOG3098|consensus	461		98.2
TIGR00893	399	2A0114 d-galactonate transporter.	98.2
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.2
PRK10489	417	enterobactin exporter EntS; Provisional	98.19
PRK10133	438	L-fucose transporter; Provisional	98.19
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.18
KOG0569|consensus	485		98.18
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.17
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.17
KOG2615|consensus	451		98.16
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.15
KOG0252|consensus	538		98.15
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.15
TIGR00900	365	2A0121 H+ Antiporter protein.	98.13
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.13
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.13
KOG1330|consensus	493		98.12
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.12
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.12
PRK15075	434	citrate-proton symporter; Provisional	98.11
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.11
PRK10091	382	MFS transport protein AraJ; Provisional	98.11
PRK10054	395	putative transporter; Provisional	98.11
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.09
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.09
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.07
PRK10429	473	melibiose:sodium symporter; Provisional	98.06
PRK10504	471	putative transporter; Provisional	98.06
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.06
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.05
KOG0253|consensus	528		98.04
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.02
PRK03633	381	putative MFS family transporter protein; Provision	98.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.98
PRK11043	401	putative transporter; Provisional	97.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.95
PRK09848	448	glucuronide transporter; Provisional	97.95
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.94
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.94
COG0477	338	ProP Permeases of the major facilitator superfamil	97.94
TIGR00901	356	2A0125 AmpG-related permease.	97.93
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.92
KOG4332|consensus	454		97.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.91
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.91
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.9
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.86
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.85
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.84
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.83
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.82
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.81
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.81
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.81
KOG3764|consensus	464		97.8
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.8
PF13347	428	MFS_2: MFS/sugar transport protein	97.79
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.78
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.78
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.73
PTZ00207	591	hypothetical protein; Provisional	97.71
PRK09669	444	putative symporter YagG; Provisional	97.68
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.64
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.63
TIGR00805	633	oat sodium-independent organic anion transporter.	97.63
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.57
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.53
PRK11010	491	ampG muropeptide transporter; Validated	97.5
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.47
COG2211	467	MelB Na+/melibiose symporter and related transport	97.45
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.43
PRK11902	402	ampG muropeptide transporter; Reviewed	97.43
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.41
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.31
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.28
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.25
PRK11462	460	putative transporter; Provisional	97.25
KOG2504|consensus	509		97.24
KOG2532|consensus	466		97.23
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.19
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.07
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.07
KOG0637|consensus	498		96.99
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.95
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.89
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.84
PF12832	77	MFS_1_like: MFS_1 like family	96.58
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.49
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.45
KOG4686|consensus	459		96.37
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.3
KOG2533|consensus	495		96.24
KOG3762|consensus	618		96.22
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.92
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.81
COG0477	338	ProP Permeases of the major facilitator superfamil	95.76
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.74
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	95.29
PF12832	77	MFS_1_like: MFS_1 like family	94.99
KOG2325|consensus	488		94.86
KOG1479|consensus	406		94.7
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	94.19
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	93.93
KOG3810|consensus	433		93.73
KOG2816|consensus	463		92.29
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	90.95
PRK03612	521	spermidine synthase; Provisional	90.63
KOG3762|consensus	618		90.54
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	89.76
KOG2563|consensus	480		86.19
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	84.5
KOG3880|consensus	409		80.19

>TIGR00898 2A0119 cation transport protein

Probab=99.97  E-value=1.1e-29  Score=266.35  Aligned_cols=336  Identities=20%  Similarity=0.304  Sum_probs=232.7

Q ss_pred             hcccccccccCcc-ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh
Q psy13410         39 STWLNWVCTQDTL-STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF  117 (493)
Q Consensus        39 ~~~~~w~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~  117 (493)
                      .|..+|.++...+ ++  +.+|||++|++..+.+++.+++++|..+|++++|+++||+|||++++++.++.+++++++++
T Consensus        99 ~~~~~~~~~~~~~~~~--i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~  176 (505)
T TIGR00898        99 PCLDGWEYSYDTFSST--IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF  176 (505)
T ss_pred             CCCCCcEecCCccccc--EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            4445677775433 44  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHH-HHHHHHHHHHHH--HHHHHH
Q psy13410        118 TKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFF-SMILFAFAEAFV--YFSQIF  194 (493)
Q Consensus       118 a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~-~~~l~~~~~~~~--w~~~~~  194 (493)
                      ++|++.++++|++.|++.|+..+...+++.|++|+++|+....         ....... +..++..+....  ||+.++
T Consensus       177 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~---------~~~~~~~~g~~~~~~~~~~~~~wr~~~~  247 (505)
T TIGR00898       177 SPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGT---------LIQVFFSLGLVLLPLVAYFIPDWRWLQL  247 (505)
T ss_pred             cccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHH---------HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999999999999999999999999998843322         2222222 222222222221  888887


Q ss_pred             HHHHhhhh----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccc
Q psy13410        195 ITVIPEHY----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMD  270 (493)
Q Consensus       195 ~~~i~~~~----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (493)
                      +..++.++    .+++||+|+  |+..+++.+++.+.+++..+.|+.....+....      .. ++   +.....++..
T Consensus       248 ~~~i~~~~~~~~~~~~~esp~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~------~~-~~---~~~~~~~~~~  315 (505)
T TIGR00898       248 AVSLPTFLFFLLSWFVPESPR--WLISQGRIEEALKILQRIAKINGKKLPAEVLSL------SL-EK---DLSSSKKQYS  315 (505)
T ss_pred             HHHHHHHHHHHHHHhcCCChH--HHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhh------hh-hh---hhhhccCCCc
Confidence            76655442    567999998  888899999999988888766643211100000      00 00   0000011223


Q ss_pred             cchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceee
Q psy13410        271 FVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRM  350 (493)
Q Consensus       271 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  350 (493)
                      +++  +++     .+..+...+.....++...+.+++  ...+.+.                                  
T Consensus       316 ~~~--l~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------------------------------  352 (505)
T TIGR00898       316 FLD--LFR-----TPNLRKTTLCLMMLWFTTAFSYYG--LVLDLGN----------------------------------  352 (505)
T ss_pred             HHH--HhC-----ChHHHHHHHHHHHHHHHHHHHHHH--Hhccccc----------------------------------
Confidence            444  544     233333333334444444444444  2222222                                  


Q ss_pred             eeecccccccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhc
Q psy13410        351 YAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF  430 (493)
Q Consensus       351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~  430 (493)
                                                         ...               ...+...+.++..+++.++.++++||+
T Consensus       353 -----------------------------------~~~---------------~~~~~~~~~~~~~i~~~~~~~~l~dr~  382 (505)
T TIGR00898       353 -----------------------------------LGG---------------NIYLDLFISGLVELPAKLITLLLIDRL  382 (505)
T ss_pred             -----------------------------------cCC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                               000               112333455778889999999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHhccccchhhhHhhhhhcccCCCCc
Q psy13410        431 GRVPALVLTNLVGFIFGVVTAFTKSF--WQFALCRFFVGLSFDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       431 Grr~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~  490 (493)
                      |||+.+.++.++.+++.++..+.++.  ...++..++.+++.++.++..+.+.+|.+|++-|
T Consensus       383 grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  444 (505)
T TIGR00898       383 GRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVR  444 (505)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence            99999999998888888777765533  4444556667777778889999999999997543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=1e-30  Score=279.13  Aligned_cols=421  Identities=14%  Similarity=0.160  Sum_probs=253.9

Q ss_pred             cccccchhhhcccccccc---cCcc--ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHH
Q psy13410         30 NWVCTQDTLSTWLNWVCT---QDTL--STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLT  104 (493)
Q Consensus        30 ~~~~~~~~~~~~~~w~~~---~~~~--~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~  104 (493)
                      .+.+|..++.+.+++..+   ....  ....+..++++   +..+.+++.+++++|.++|++++|+++||+|||++++++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gl---s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~  238 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCI---PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC  238 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            455666666555555433   2111  11126677776   667799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHH
Q psy13410        105 NLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFA  184 (493)
Q Consensus       105 ~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~  184 (493)
                      ++++++++++++++++++.++++|+++|++.|+..++..++++|++|+++|+.....        .......+..++..+
T Consensus       239 lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~--------~~~~~~iG~ila~~l  310 (742)
T TIGR01299       239 LSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSW--------LCMFWMIGGIYAAAM  310 (742)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999877433211        111111112222111


Q ss_pred             ----HH--------------HHHHHHHHHHHHhhhh----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCC
Q psy13410        185 ----EA--------------FVYFSQIFITVIPEHY----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGL  242 (493)
Q Consensus       185 ----~~--------------~~w~~~~~~~~i~~~~----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~  242 (493)
                          .+              ..||+.+++.++|.++    ++++||||+  |+..+++.+++.+.++++...|......+
T Consensus       311 a~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPr--wL~~~gr~~eA~~iL~~i~~~n~~~~~~~  388 (742)
T TIGR01299       311 AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPR--FFLENGKHDEAWMILKLIHDTNMRAKGHP  388 (742)
T ss_pred             HHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHCCCHHHHHHHHHHHhcCCCCCcCch
Confidence                10              1288888877776654    567999999  99999999999999999987664321100


Q ss_pred             CCC-----CCCcc-CCCCCcccccccc-----cccc---c----cccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHH
Q psy13410        243 HNS-----PRSST-HGSLNRESLKSRS-----LTRR---N----MDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFV  304 (493)
Q Consensus       243 ~~~-----~~~~~-~~~~~~~~~~~~~-----~~~~---~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (493)
                      ...     .+... ..+..+...+...     ..+.   .    ..+++  +++     +++ ++..+++.+.++...+.
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--lf~-----~~~-~~~tl~l~~~wf~~~~~  460 (742)
T TIGR01299       389 EKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLR--CFN-----PEV-REITIKLMGVWFTLSFG  460 (742)
T ss_pred             hHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHH--HcC-----ccH-HHHHHHHHHHHHHHHHH
Confidence            000     00000 0000000000000     0000   0    01223  332     334 44455577778888888


Q ss_pred             HHHHhhhccCCCcceec---------C---CCC--CCC--Chhhhh--------------ccc--ccC-CCCCCCceeee
Q psy13410        305 YFSQIFITVIPEHYWCR---------V---PEL--SHL--DFEQRK--------------LIS--IPQ-IGAAFDSCRMY  351 (493)
Q Consensus       305 ~~~~~~~~~~p~~~~~~---------~---~~~--~~~--~~~~~~--------------~~~--~~~-~~~~~~~c~~~  351 (493)
                      +|+  +..|.|. ..-+         .   ...  .+-  +|+-..              .+.  ... .+..+.-|...
T Consensus       461 yyg--l~~w~P~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (742)
T TIGR01299       461 YYG--LSVWFPD-MIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFD  537 (742)
T ss_pred             HHH--HHHHHHH-HHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccccccccccee
Confidence            888  6777774 1100         0   000  010  111000              000  000 00002223222


Q ss_pred             eec--------ccccccC--CCC------CCCC-C-----CCeeeccCceeeccCCCccchhhhhcccccccchhhhHHH
Q psy13410        352 AVN--------YTHLLGS--GIT------KADP-S-----WPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQ  409 (493)
Q Consensus       352 ~~~--------~~~l~~~--~~~------~~~~-~-----~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~  409 (493)
                      ..+        ++.+...  +..      .... .     .+.+.|.....=+                ........+..
T Consensus       538 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~----------------~~~~~~~~~~~  601 (742)
T TIGR01299       538 DVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGD----------------DEGAYMIYFVN  601 (742)
T ss_pred             eccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCcc----------------chhHHHHHHHH
Confidence            211        1111100  000      0000 0     0001111100000                00011345556


Q ss_pred             HHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410        410 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG  489 (493)
Q Consensus       410 ~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~  489 (493)
                      .+..++.++|.+++|+++||+|||++++++.++.+++.+++.+.++...+++..++.+++.++.+++.+.+++|++|++-
T Consensus       602 ~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~  681 (742)
T TIGR01299       602 FLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDK  681 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            77789999999999999999999999999999999999888888777777777778888888889999999999999754


Q ss_pred             c
Q psy13410        490 C  490 (493)
Q Consensus       490 ~  490 (493)
                      |
T Consensus       682 R  682 (742)
T TIGR01299       682 R  682 (742)
T ss_pred             H
Confidence            3

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253|consensus

Probab=99.97  E-value=1.5e-29  Score=237.73  Aligned_cols=388  Identities=16%  Similarity=0.161  Sum_probs=263.1

Q ss_pred             hhheeecccccc-----cccchhhhccccccccc-----CccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhh
Q psy13410         20 LTRWTLDLELNW-----VCTQDTLSTWLNWVCTQ-----DTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFG   89 (493)
Q Consensus        20 ~~~~~~~~~l~~-----~~~~~~~~~~~~w~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g   89 (493)
                      -+++.+++.+|-     .||..++.+.++|.-|.     ..+-...+..+|+.   +..+.+++....+.|+.+|+..||
T Consensus        58 ~k~~tv~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~---s~~q~~llt~~v~~gmllga~~w~  134 (528)
T KOG0253|consen   58 AKSFTVDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGP---SEGQAPLLTLSVFLGMLVGAMVWG  134 (528)
T ss_pred             cceeeehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhch---hhhhhhHHHHHHHhhhhhhhhhhh
Confidence            347778877774     77778888888898653     11222336778886   778899999999999999999999


Q ss_pred             hhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccc
Q psy13410         90 WVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGR  169 (493)
Q Consensus        90 ~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~  169 (493)
                      .++|++|||+.+.++.+...+..++.++++||..+++.|.+.|+|.|+ .|...++-.|..|..+|..-.++        
T Consensus       135 l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~--------  205 (528)
T KOG0253|consen  135 LSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVM--------  205 (528)
T ss_pred             eehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhH--------
Confidence            999999999999999999999999999999999999999999999999 99999999999999988443322        


Q ss_pred             hhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhh----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCC
Q psy13410        170 YQKVLFFSMILFAFAEAF-----VYFSQIFITVIPEHY----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDR  240 (493)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~-----~w~~~~~~~~i~~~~----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~  240 (493)
                       ...+..+....+.+...     .||+..+...+|..+    .+++|||||  ++..+|++++|.+.++++++.|++.-+
T Consensus       206 -~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpR--f~~~~G~~~kAletL~kiArmNg~qlp  282 (528)
T KOG0253|consen  206 -SFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPR--FYLAKGDDYKALETLHKIARMNGKQLP  282 (528)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcc--hhhhcCChHHHHHHHHHHHHhcCCCCC
Confidence             22233333333332222     288887777676654    678999999  888899999999999999999876532


Q ss_pred             CCCCCCCCccCCCCCccc-ccccccccc--ccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q psy13410        241 GLHNSPRSSTHGSLNRES-LKSRSLTRR--NMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEH  317 (493)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  317 (493)
                      .-.+......+.++++.+ .+++.+..+  .-+..+  ++.      +..++..+++...++...+.+|+.+.....-. 
T Consensus       283 lgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~n--Lls------p~lrkttlllw~iwfgnafsyyg~VLlttelf-  353 (528)
T KOG0253|consen  283 LGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTN--LLS------PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELF-  353 (528)
T ss_pred             cceeeeehhhhhhhhhhchhhhhhccccccccchHh--hcC------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence            111111110000001000 011111111  112333  433      33344445567778888888888655422111 


Q ss_pred             ceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhccc
Q psy13410        318 YWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNW  397 (493)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l  397 (493)
                        -.                       -+.|..|...               +++                   ..+..+
T Consensus       354 --qs-----------------------gd~c~~~~r~---------------~p~-------------------e~e~~~  374 (528)
T KOG0253|consen  354 --QS-----------------------GDACPLYNRF---------------LPT-------------------ELETRA  374 (528)
T ss_pred             --hc-----------------------cCccccchhc---------------chh-------------------HHHhhh
Confidence              00                       1112222100               000                   000000


Q ss_pred             ccccchhhhHH-HHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhh
Q psy13410        398 VCTQDTLSTWA-QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTM  476 (493)
Q Consensus       398 ~~~~~~~~~~~-~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  476 (493)
                      .|.......+. ..+..+..++|.++.++++||+|||+.+....++.+++.+++....+-....+..|..-++..+.+.+
T Consensus       375 ~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqv  454 (528)
T KOG0253|consen  375 NCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQV  454 (528)
T ss_pred             cCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheE
Confidence            11111111111 13447888999999999999999999999999999999999888776666677777888888899999


Q ss_pred             HhhhhhcccCCCCc
Q psy13410        477 MYILETNRKPFPGC  490 (493)
Q Consensus       477 ~~~~~~e~~p~~~~  490 (493)
                      .|+|.+|++|+.-|
T Consensus       455 aYvYtPEVyPTavR  468 (528)
T KOG0253|consen  455 AYVYTPEVYPTAVR  468 (528)
T ss_pred             EEEecCcccchhhh
Confidence            99999999997644

>KOG0255|consensus

Probab=99.96  E-value=5.1e-28  Score=254.57  Aligned_cols=356  Identities=20%  Similarity=0.280  Sum_probs=251.6

Q ss_pred             hheeecccccccccch----hhhcccccccccCcc-ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhccc
Q psy13410         21 TRWTLDLELNWVCTQD----TLSTWLNWVCTQDTL-STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF   95 (493)
Q Consensus        21 ~~~~~~~~l~~~~~~~----~~~~~~~w~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~   95 (493)
                      ..++...+.||..+++    ...|+.+|.++.... .+  +..|+++.|++.....+..+++++|.++|++++|+++||+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~  145 (521)
T KOG0255|consen   68 PTLDPANPLNWPSWKKWLLVIVICLDGWVYDYGSSVYS--IVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF  145 (521)
T ss_pred             CccCcCCccccccccccccccccccceeEecCCCCccc--ccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc
Confidence            4455666667755544    357778898876544 33  6666999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHH
Q psy13410         96 GRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLF  175 (493)
Q Consensus        96 GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~  175 (493)
                      |||++++.++++..++.+++++++|++.+++.||++|++.++...++.++++|++++++|         +..+.......
T Consensus       146 GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R---------~~~~~~~~~~~  216 (521)
T KOG0255|consen  146 GRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQR---------GLALTLGGFFF  216 (521)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchh---------hHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999         33333323333


Q ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHhhhh----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q psy13410        176 FSMILFAFAEAFV---YFSQIFITVIPEHY----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRS  248 (493)
Q Consensus       176 ~~~~l~~~~~~~~---w~~~~~~~~i~~~~----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  248 (493)
                      .++.++.......   ||+.+++..+|...    +++.|||||  |+..+++.+++.+.++++.+.|+...+..+.....
T Consensus       217 ~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~r--wl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~  294 (521)
T KOG0255|consen  217 VGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPR--WLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLE  294 (521)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChH--HHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHH
Confidence            3443333333333   99988887766553    466779999  99999999999999999987763221110000000


Q ss_pred             ccCCCCCccccccccccccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCC
Q psy13410        249 STHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHL  328 (493)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  328 (493)
                      .      ...........+...+.+  +++     .+..++....+.+.++.....+++..+....-             
T Consensus       295 ~------~~~~~~~~~~~~~~~~~~--l~~-----~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~l-------------  348 (521)
T KOG0255|consen  295 L------LLRPLKLLFTEPKISFLD--LFR-----TPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGL-------------  348 (521)
T ss_pred             H------HhhHhhhhccCCCCchhh--hhc-----CHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhc-------------
Confidence            0      000000011112233555  554     44344445555566666666666632221100             


Q ss_pred             ChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHH
Q psy13410        329 DFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWA  408 (493)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~  408 (493)
                                                                                               .....+.
T Consensus       349 -------------------------------------------------------------------------g~~~~~~  355 (521)
T KOG0255|consen  349 -------------------------------------------------------------------------GGNIYLN  355 (521)
T ss_pred             -------------------------------------------------------------------------CchHHHH
Confidence                                                                                     0022334


Q ss_pred             HHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHhccccchhhhHhhhhhccc
Q psy13410        409 QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFW---QFALCRFFVGLSFDNCFTMMYILETNRK  485 (493)
Q Consensus       409 ~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~l~g~~~~~~~~~~~~~~~e~~  485 (493)
                      ....+....++....+...|++|||.....+.++..++.+...+.....   ...+...+..++.+..+...+.+.+|.+
T Consensus       356 ~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  435 (521)
T KOG0255|consen  356 FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI  435 (521)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4444557777888889999999999999999999999988888765332   3455556666777778888899999999


Q ss_pred             CCC
Q psy13410        486 PFP  488 (493)
Q Consensus       486 p~~  488 (493)
                      |+.
T Consensus       436 pt~  438 (521)
T KOG0255|consen  436 PTV  438 (521)
T ss_pred             cHH
Confidence            964

>KOG0569|consensus

Probab=99.96  E-value=3.6e-28  Score=244.75  Aligned_cols=318  Identities=19%  Similarity=0.254  Sum_probs=221.7

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhhcccchhhhhh
Q psy13410         67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT---KSFWQFALCRFFVGLSFDNCFTMMY  143 (493)
Q Consensus        67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a---~s~~~l~~~R~l~Gi~~g~~~~~~~  143 (493)
                      +...+.+++++.+|.++|+++.|+++||+|||..++++.++..++++++.++   +++++++++|++.|+..|......+
T Consensus        59 ~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~p  138 (485)
T KOG0569|consen   59 DLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVP  138 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3557789999999999999999999999999999999999999999888865   7899999999999999999999999


Q ss_pred             hhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHH--H------HHHHHHHHHHhhhh----heeccCCCc
Q psy13410        144 ILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF--V------YFSQIFITVIPEHY----WCRVPELSH  211 (493)
Q Consensus       144 ~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~--~------w~~~~~~~~i~~~~----~~~~pesp~  211 (493)
                      .|+.|..|++.|         |..|...++....+.+.+...+.  +      |++.+.+..+|+++    ..++|||||
T Consensus       139 myl~E~sP~~~R---------G~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk  209 (485)
T KOG0569|consen  139 MYLTEISPKNLR---------GALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK  209 (485)
T ss_pred             HHHhhcChhhhc---------cHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            999999999999         77777777777777665533222  2      99999988888765    668999999


Q ss_pred             hhhhhh-ccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchHHHHH
Q psy13410        212 LDYADK-EESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVL  290 (493)
Q Consensus       212 ~~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  290 (493)
                        |+.. +++.+||++.++.++..++..++.          ++..++.++++...+++.++.+  ++++     +..|+.
T Consensus       210 --~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~----------e~~~~e~~~~~~~~~~~~sl~~--~~~~-----~~lR~~  270 (485)
T KOG0569|consen  210 --YLLIKKGDEEEARKALKFYRGKEDVEAEI----------EEMLREIEEEELEKKKQISLRQ--LLKN-----PTLRRP  270 (485)
T ss_pred             --hHHHHcCCHHHHHHHHHHHhCCCcchhHH----------HHHHHHHHHhccccccCCcHHH--HhcC-----cchhHH
Confidence              7766 899999999999997664322110          0001111111112235556667  7763     333333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCC
Q psy13410        291 FFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSW  370 (493)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~  370 (493)
                      ........+...+....       +.                                                      
T Consensus       271 ~~i~~~v~~~qq~sGi~-------ai------------------------------------------------------  289 (485)
T KOG0569|consen  271 LLIGIVVSFAQQFSGIN-------AI------------------------------------------------------  289 (485)
T ss_pred             HHHHHHHHHHHHhcCcc-------ee------------------------------------------------------
Confidence            22222221111111110       00                                                      


Q ss_pred             CeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHH
Q psy13410        371 PIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVT  450 (493)
Q Consensus       371 ~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~  450 (493)
                              +      ++...+....++.   ...+.+++...++..++.++++.+++||+|||++++.+..++.++.+++
T Consensus       290 --------~------~Yst~i~~~aG~~---~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~  352 (485)
T KOG0569|consen  290 --------F------FYSTSIFKTAGFT---PEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLM  352 (485)
T ss_pred             --------H------HHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence                    0      1112233333332   3356788888899999999999999999999999999999888877666


Q ss_pred             Hhh---h----hHHH--HHHHHHHHhccc-cchhhhHhhhhhcccCCCCc
Q psy13410        451 AFT---K----SFWQ--FALCRFFVGLSF-DNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       451 ~~~---~----~~~~--~~~~~~l~g~~~-~~~~~~~~~~~~e~~p~~~~  490 (493)
                      ...   .    ++..  .+++.++..+.. -+..|+.+-+.+|++|+.-|
T Consensus       353 ~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R  402 (485)
T KOG0569|consen  353 SIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR  402 (485)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch
Confidence            542   1    1111  223333333322 35678899999999998655

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.94  E-value=1.5e-25  Score=234.75  Aligned_cols=157  Identities=16%  Similarity=0.271  Sum_probs=122.2

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHhhcccchh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS------FWQFALCRFFVGLSFDNCF  139 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s------~~~l~~~R~l~Gi~~g~~~  139 (493)
                      ++.+.+++.+.+.+|..++++++|+++||+|||+++.++.+++.+++++++++++      ++.++++|+++|++.|+..
T Consensus        54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~  133 (502)
T TIGR00887        54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY  133 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence            3456789999999999999999999999999999999999999999999999876      7899999999999999999


Q ss_pred             hhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHH----------------------------HHHHHH
Q psy13410        140 TMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAE----------------------------AFVYFS  191 (493)
Q Consensus       140 ~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~----------------------------~~~w~~  191 (493)
                      +...++++|++|+++|+........        ....+..++..+.                            ...||+
T Consensus       134 ~~~~~~~~e~~p~~~Rg~~~~~~~~--------~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~  205 (502)
T TIGR00887       134 PLSAIITSEFATKKWRGAMMAAVFA--------MQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRI  205 (502)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHH
Confidence            9999999999999988554433111        1111111111111                            124999


Q ss_pred             HHHHHHHhhhh----heeccCCCchhhhhhccCHH-HHHHHHHHHh
Q psy13410        192 QIFITVIPEHY----WCRVPELSHLDYADKEESHE-EADTIAESYI  232 (493)
Q Consensus       192 ~~~~~~i~~~~----~~~~pesp~~~~l~~~~~~~-~a~~~l~~~~  232 (493)
                      .+.+..+|.++    ++++|||||  |+..+++.+ ++.+.+++..
T Consensus       206 ~~~~~~ip~~i~~~~~~~lpESpr--~l~~~~~~~~~a~~~~~~~~  249 (502)
T TIGR00887       206 LIGFGAVPALLALYFRLTIPETPR--YTADVAKDVEQAASDMSAVL  249 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHH--HHHHhCcchHHHHHHHHHHh
Confidence            99888877764    457999999  888777764 4555555554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0254|consensus

Probab=99.94  E-value=7.2e-26  Score=237.33  Aligned_cols=318  Identities=17%  Similarity=0.173  Sum_probs=211.2

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccc
Q psy13410         69 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMP  148 (493)
Q Consensus        69 ~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e  148 (493)
                      +.+|+++++.+|.++|++++|+++|++|||++++++.+++.++++++++++|+.+++++|+++|+|.|+...+.+.|++|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCccccccccccccccchhHHHHHHHHHHHHHHH-H------HHHHHHHHHHHhhhh----heeccCCCchhhhhh
Q psy13410        149 IYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEA-F------VYFSQIFITVIPEHY----WCRVPELSHLDYADK  217 (493)
Q Consensus       149 ~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~-~------~w~~~~~~~~i~~~~----~~~~pesp~~~~l~~  217 (493)
                      +.|++.|         |......+.....+.+.+++.. .      .||..+.+..+|.++    .+++|||||  |+.+
T Consensus       170 iap~~~R---------G~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~--~L~~  238 (513)
T KOG0254|consen  170 IAPAHIR---------GTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPR--WLIE  238 (513)
T ss_pred             cCChhhh---------HHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChH--HHHH
Confidence            9999988         6666555555555544433332 1      399888887777664    568999999  9999


Q ss_pred             ccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchHHHHHHHHHHHH
Q psy13410        218 EESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILF  297 (493)
Q Consensus       218 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  297 (493)
                      +|+.++++..++++...++.+.+.+....+        .+...+......+..+++  +++     +..+++....+.+ 
T Consensus       239 ~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--l~~-----~~~~~~~~i~~~l-  302 (513)
T KOG0254|consen  239 KGRLEEAKRSLKRLRGLSPEDVEVELELLK--------IKLLVEAEVAEGKASWGE--LFS-----PKVRKRLIIGLLL-  302 (513)
T ss_pred             cCChHHHHHHHHHHhCCCCcchHHHHHHHH--------HHHHHhhhcccccccHHH--hcC-----cchHHHHHHHHHH-
Confidence            999999999999987633111000000000        000000000001112233  332     2233333322222 


Q ss_pred             HHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCCCeeeccC
Q psy13410        298 AFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQH  377 (493)
Q Consensus       298 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  377 (493)
                      ..+..+..+.  ...                                                                 
T Consensus       303 ~~fqq~tG~~--~~~-----------------------------------------------------------------  315 (513)
T KOG0254|consen  303 QLFQQLTGIN--YVF-----------------------------------------------------------------  315 (513)
T ss_pred             HHHHHHhCCc--eEE-----------------------------------------------------------------
Confidence            1222211111  110                                                                 


Q ss_pred             ceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh---
Q psy13410        378 GWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK---  454 (493)
Q Consensus       378 g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~---  454 (493)
                              ++...+....+...  + . .+...+.++..+++.+++.++.||+|||+.++.+...+.++.++++...   
T Consensus       316 --------~Y~~~if~~~g~~~--~-~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~  383 (513)
T KOG0254|consen  316 --------YYSTTIFKSAGLKS--D-T-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFA  383 (513)
T ss_pred             --------eehHHHHHhcCCCC--c-h-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence                    11122222222211  1 1 5556666778888888889999999999999999999999888776431   


Q ss_pred             ----------hHHHHHHHHHHHhccccchhhhHhhhhhcccCCCCccC
Q psy13410        455 ----------SFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGCFQ  492 (493)
Q Consensus       455 ----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~~~  492 (493)
                                .+..++...+.......+..++.+.+.+|++|.|-|..
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~  431 (513)
T KOG0254|consen  384 LYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSK  431 (513)
T ss_pred             ccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhh
Confidence                      11222233333334444666777899999999887654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.93  E-value=6e-25  Score=229.36  Aligned_cols=330  Identities=16%  Similarity=0.223  Sum_probs=197.3

Q ss_pred             chhhhcccccccc---cCcc--ceeeeccccccccccc-chh-hH-HHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHH
Q psy13410         35 QDTLSTWLNWVCT---QDTL--STWALTPQLNWVCTQD-TLS-TW-AQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNL  106 (493)
Q Consensus        35 ~~~~~~~~~w~~~---~~~~--~~~~i~~~~~~~~~~~-~~~-~~-~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~  106 (493)
                      +..+.++++|..|   ...+  ....+.++|....++. ... .+ +.++.++++.+|++++|+++||+|||+++.++++
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   95 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV   95 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            3455566666643   3332  1222566775432221 111 22 2578899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccHHH--------HHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHH
Q psy13410        107 VGFIFGVITAFTKSFWQ--------FALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSM  178 (493)
Q Consensus       107 ~~~i~~~~~a~a~s~~~--------l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~  178 (493)
                      +++++++++++++|+++        ++++|+++|++.|+.++...++++|++|+++|+......   ..|...+.. .+.
T Consensus        96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~---~~~~~~G~~-lg~  171 (490)
T PRK10642         96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWL---DFGSIAGFV-LGA  171 (490)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHH---HHHHHHHHH-HHH
Confidence            99999999999999975        899999999999999999999999999999885433221   111111111 111


Q ss_pred             HHHHHHH---------HHHHHHHHHHHHHhhhh----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCC
Q psy13410        179 ILFAFAE---------AFVYFSQIFITVIPEHY----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNS  245 (493)
Q Consensus       179 ~l~~~~~---------~~~w~~~~~~~~i~~~~----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  245 (493)
                      .+...+.         .+.||+.|++++++.++    +..+||||+  |...+++.++.        .++...       
T Consensus       172 ~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~--~~~~~~~~~~~--------~~~~~~-------  234 (490)
T PRK10642        172 GVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPA--FQQHVDKLEQG--------DREGLQ-------  234 (490)
T ss_pred             HHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChh--HHHHHHhhhhh--------cccccc-------
Confidence            1111111         23499999887655432    457899997  54322111100        000000       


Q ss_pred             CCCccCCCCCccccccccccccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCC
Q psy13410        246 PRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPEL  325 (493)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  325 (493)
                                 +        .++..+++  +++      ++.+.... .....+.....++.  +..+.|.         
T Consensus       235 -----------~--------~~~~~~~~--~~~------~~~~~~~~-~~~~~~~~~~~~~~--~~~~~p~---------  275 (490)
T PRK10642        235 -----------D--------GPKVSFKE--IAT------KHWRSLLT-CIGLVIATNVTYYM--LLTYMPS---------  275 (490)
T ss_pred             -----------c--------cccCCHHH--HHH------HhHHHHHH-HHHHHHHHHHHHHH--HHHHHHH---------
Confidence                       0        01112334  443      11122111 11112222233333  3334443         


Q ss_pred             CCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhh
Q psy13410        326 SHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLS  405 (493)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~  405 (493)
                                                                                      .+...+++   +....
T Consensus       276 ----------------------------------------------------------------~l~~~~g~---s~~~~  288 (490)
T PRK10642        276 ----------------------------------------------------------------YLSHNLHY---SEDHG  288 (490)
T ss_pred             ----------------------------------------------------------------HHHHhcCC---CHHHH
Confidence                                                                            00001111   11234


Q ss_pred             hHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHH-HH--hhhhHHHHHHHHHHHhccccchhhhHhhhhh
Q psy13410        406 TWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVV-TA--FTKSFWQFALCRFFVGLSFDNCFTMMYILET  482 (493)
Q Consensus       406 ~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~-~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  482 (493)
                      ++......++.+++.++.|+++||+|||+.+..+.++..+..+. +.  ...+...++++.++.|++.+...+....+++
T Consensus       289 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~  368 (490)
T PRK10642        289 VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLP  368 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667778889999999999999999999888777644433222 22  2334556666777777777667777888899


Q ss_pred             cccCCCCcc
Q psy13410        483 NRKPFPGCF  491 (493)
Q Consensus       483 e~~p~~~~~  491 (493)
                      |.+|++-|.
T Consensus       369 ~~~p~~~Rg  377 (490)
T PRK10642        369 AMFPTHIRY  377 (490)
T ss_pred             HHCCCccch
Confidence            999987654

>KOG0252|consensus

Probab=99.93  E-value=1.2e-25  Score=218.06  Aligned_cols=323  Identities=14%  Similarity=0.147  Sum_probs=200.4

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhhcccch
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS-------FWQFALCRFFVGLSFDNC  138 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s-------~~~l~~~R~l~Gi~~g~~  138 (493)
                      ++...+.+.++.++|-.+|++++|+++||+|||+++...++++.+++++++++.+       ..++.+.|+++|+|+|+-
T Consensus        82 ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGD  161 (538)
T KOG0252|consen   82 PSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGD  161 (538)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCC
Confidence            4566788899999999999999999999999999999999999999998887632       568999999999999999


Q ss_pred             hhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhhh
Q psy13410        139 FTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEA-----------------FVYFSQIFITVIPEH  201 (493)
Q Consensus       139 ~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~-----------------~~w~~~~~~~~i~~~  201 (493)
                      +|.+.++.+|....++|+.-......     .++.....+.+.+.+..                 .+||.++.++++|++
T Consensus       162 YPlSAtI~SE~an~~~RGa~iaavFa-----~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~  236 (538)
T KOG0252|consen  162 YPLSATIMSESANKKTRGAFIAAVFA-----MQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPAL  236 (538)
T ss_pred             CcchHHHhhhhhhhccccceeEEEEE-----ecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999543322221     11111111111111111                 119999999999987


Q ss_pred             h----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhh
Q psy13410        202 Y----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFG  277 (493)
Q Consensus       202 ~----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  277 (493)
                      .    ++.||||+||.-+.+ ++.+.+.   ++..+    +.   +.        ..++++..+.....+..+++.  ..
T Consensus       237 ~~ly~Rl~M~Et~~Y~al~~-~~~~~a~---~d~~k----~~---~~--------~~~~~~~~~~~~~~~~~~~~~--F~  295 (538)
T KOG0252|consen  237 LVLYFRLKMPETARYTALVS-KKLKQAA---GDMKK----VL---SV--------DIEAESTAESDVPPPSNSFGL--FS  295 (538)
T ss_pred             HHHHhhhcCCcchhHHHHhh-cCHhhhh---hcccc----cc---cc--------ccchhhccccCCCCcccccch--HH
Confidence            5    678999998543333 2333222   11110    00   00        000111111111111112221  11


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccc
Q psy13410        278 ENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTH  357 (493)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  357 (493)
                      +..   .++.-+.++..+..|+......|.....                                              
T Consensus       296 ~~f---~~~hg~~Llgt~~~WFllDiafy~~nL~----------------------------------------------  326 (538)
T KOG0252|consen  296 RLF---LRWHGKHLLGTAGTWFLLDIAFYGQNLF----------------------------------------------  326 (538)
T ss_pred             HHH---HHHHHHHHHHHHHHHHhhhhhhhccccH----------------------------------------------
Confidence            110   1122234455677777777776663222                                              


Q ss_pred             cccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccc-----hhhhHHH-HHHHHHHHHHHHhHHhhhhhcC
Q psy13410        358 LLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQD-----TLSTWAQ-AFFFCGAIVGGLVFGWVADRFG  431 (493)
Q Consensus       358 l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~-~~~~i~~~ig~~~~g~l~Dr~G  431 (493)
                                                    .+.+.+..+......     ...+... .+...+.++|.++...++|++|
T Consensus       327 ------------------------------~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iG  376 (538)
T KOG0252|consen  327 ------------------------------QSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIG  376 (538)
T ss_pred             ------------------------------HHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhh
Confidence                                          111111111111111     1122222 3334555669999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHhhhhH----HHHHHHH-HHHhccccchhhhHhhhhhcccCCCCccCC
Q psy13410        432 RVPALVLTNLVGFIFGVVTAFTKSF----WQFALCR-FFVGLSFDNCFTMMYILETNRKPFPGCFQC  493 (493)
Q Consensus       432 rr~~l~~~~~~~~i~~~~~~~~~~~----~~~~~~~-~l~g~~~~~~~~~~~~~~~e~~p~~~~~~~  493 (493)
                      ||+..+.+++++.+.++.++...+.    ...+++. +..-++.-++.+....+.+|++|.|-|..|
T Consensus       377 Rk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~  443 (538)
T KOG0252|consen  377 RKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTC  443 (538)
T ss_pred             hHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhh
Confidence            9999999999999999998876552    1112222 222234456778889999999999888766

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.92  E-value=8.2e-24  Score=214.91  Aligned_cols=171  Identities=14%  Similarity=0.215  Sum_probs=130.4

Q ss_pred             cccccccchhhhccccccccc-------CccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhH
Q psy13410         28 ELNWVCTQDTLSTWLNWVCTQ-------DTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPA  100 (493)
Q Consensus        28 ~l~~~~~~~~~~~~~~w~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~  100 (493)
                      +++|.+|+.+..+++++..|.       ...+.  +.+++++   +..+.+++.+++.++..+++++.|+++||+|||++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~   79 (405)
T TIGR00891         5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAE--VAGEFGL---TTVDAASLISAALISRWFGALMFGLWGDRYGRRLP   79 (405)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            367778888887777777553       22233  7788887   67789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHH
Q psy13410        101 LVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMIL  180 (493)
Q Consensus       101 l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l  180 (493)
                      ++.+.++.++++++.+++++++.+++.|++.|++.++..+...+++.|++|+++|+.+.....        .....+..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~g~~~  151 (405)
T TIGR00891        80 MVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLI--------SGYAVGAVV  151 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHH--------HHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988854432211        111112222


Q ss_pred             HHHH----HHH---HHHHHHHHHHHhhhh----heeccCCCc
Q psy13410        181 FAFA----EAF---VYFSQIFITVIPEHY----WCRVPELSH  211 (493)
Q Consensus       181 ~~~~----~~~---~w~~~~~~~~i~~~~----~~~~pesp~  211 (493)
                      +..+    ...   .||..+.+.+++.+.    ...+||+++
T Consensus       152 ~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~  193 (405)
T TIGR00891       152 AAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAED  193 (405)
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence            2222    111   188888776655443    446788765

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.92  E-value=6.9e-24  Score=217.97  Aligned_cols=167  Identities=14%  Similarity=0.112  Sum_probs=113.9

Q ss_pred             hhhhcccccc---cccCcc--ceeeecccccccccccc---hhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHH
Q psy13410         36 DTLSTWLNWV---CTQDTL--STWALTPQLNWVCTQDT---LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLV  107 (493)
Q Consensus        36 ~~~~~~~~w~---~~~~~~--~~~~i~~~~~~~~~~~~---~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~  107 (493)
                      ....++++|.   +|...+  ....+.+|++....+..   +.+.+.+..+++..+|++++|+++||+|||+++..++++
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~  102 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCM  102 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            4455555555   343333  11225667642111222   233445566677779999999999999999999999999


Q ss_pred             HHHHHHHHHhcccHH--------HHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHH-
Q psy13410        108 GFIFGVITAFTKSFW--------QFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSM-  178 (493)
Q Consensus       108 ~~i~~~~~a~a~s~~--------~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~-  178 (493)
                      ++++++++++++++.        .+++.|+++|++.|+.++...++++|++|+++|+.....         .......+ 
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~---------~~~~~~~G~  173 (432)
T PRK10406        103 MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASF---------QYVTLIGGQ  173 (432)
T ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHH---------HHHHHHHHH
Confidence            999999999999875        599999999999999999999999999999988443222         11111111 


Q ss_pred             HHHH----HHH---------HHHHHHHHHHHHHhhhh----heeccCCCc
Q psy13410        179 ILFA----FAE---------AFVYFSQIFITVIPEHY----WCRVPELSH  211 (493)
Q Consensus       179 ~l~~----~~~---------~~~w~~~~~~~~i~~~~----~~~~pesp~  211 (493)
                      .++.    .+.         ...||..|++++++.++    +..+||+|+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~  223 (432)
T PRK10406        174 LLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQ  223 (432)
T ss_pred             HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            1111    111         23499999887776654    335677764

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=5.3e-24  Score=205.80  Aligned_cols=337  Identities=16%  Similarity=0.124  Sum_probs=228.3

Q ss_pred             ccchhhhcccccc---cccCcc--ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHH
Q psy13410         33 CTQDTLSTWLNWV---CTQDTL--STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLV  107 (493)
Q Consensus        33 ~~~~~~~~~~~w~---~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~  107 (493)
                      +++.++..++++.   ..+.+|  ..+.+.++.++   +..+.+++.+.+++.++++..++|.++||.+.|..+.+++++
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l---sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil  103 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL---SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence            4567777777776   345555  55558888887   889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCcccccccccc-ccccchhHHHHHHHHHHHHHHH
Q psy13410        108 GFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHL-GEFGRYQKVLFFSMILFAFAEA  186 (493)
Q Consensus       108 ~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~-g~~g~~~~~~~~~~~l~~~~~~  186 (493)
                      .++.+++.++++|.+.+.+.-++.|..+|...|.+...+..|+++++|+..-.+... |..|..........  +.+...
T Consensus       104 sai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l--a~~~~~  181 (448)
T COG2271         104 SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL--AFFAFH  181 (448)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH--HHHHhc
Confidence            999999999999999999999999999999999999999999999988543333222 22222111111100  111111


Q ss_pred             HHHHHHHHHHHHhhhh-----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCcccccc
Q psy13410        187 FVYFSQIFITVIPEHY-----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKS  261 (493)
Q Consensus       187 ~~w~~~~~~~~i~~~~-----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (493)
                      ..||..|++.++.+++     ++.++++|+     +.|-+.     .++.++.  ..+      .       . +++++.
T Consensus       182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pq-----s~GLP~-----ie~~~~d--~~e------~-------~-~~~~~~  235 (448)
T COG2271         182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQ-----SEGLPP-----IEEYRGD--PLE------I-------Y-EEEKEN  235 (448)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhCCCcc-----ccCCCC-----HHHhhcC--chh------h-------h-hhhccC
Confidence            2399988887665543     556778875     111110     0111000  000      0       0 000000


Q ss_pred             ccccccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCC
Q psy13410        262 RSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQI  341 (493)
Q Consensus       262 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (493)
                      +.....+.-++.  +++         .+.++++++..++.....++  ...|.|. +.-+.+                  
T Consensus       236 ~~ls~~~i~~~Y--VL~---------Nk~iW~la~a~vfvYivR~g--i~dW~p~-YL~e~k------------------  283 (448)
T COG2271         236 EGLTAWQIFVKY--VLK---------NKLIWLLALANVFVYVVRYG--INDWGPL-YLSEVK------------------  283 (448)
T ss_pred             CCccHHHHHHHH--HHc---------ChHHHHHHHHHHHHHHHHHH--HhhhHHH-HHHHhc------------------
Confidence            000111122233  333         34456677777788888888  7777776 111111                  


Q ss_pred             CCCCCceeeeeecccccccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHH
Q psy13410        342 GAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGL  421 (493)
Q Consensus       342 ~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~  421 (493)
                                                                          +++     ...+.+..+.+-+++++|++
T Consensus       284 ----------------------------------------------------~~s-----~~~a~~a~~lfE~agl~G~L  306 (448)
T COG2271         284 ----------------------------------------------------GFS-----LVKANWAISLFEVAGLPGTL  306 (448)
T ss_pred             ----------------------------------------------------CCC-----HHHHHHHHHHHHHHhhHHHH
Confidence                                                                111     22678889999999999999


Q ss_pred             hHHhhhhhc--CCchHHHHHHHH-HHHHHHHHHhhh--hHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410        422 VFGWVADRF--GRVPALVLTNLV-GFIFGVVTAFTK--SFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG  489 (493)
Q Consensus       422 ~~g~l~Dr~--Grr~~l~~~~~~-~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~  489 (493)
                      ++||+|||+  |||.+..+.+.+ ..++.+...+.+  |+....++.+++|+...++.-.+-..+.|+.|++.
T Consensus       307 l~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A  379 (448)
T COG2271         307 LAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA  379 (448)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh
Confidence            999999996  888776655544 444444444544  45788889999999999999999999999999864

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.91  E-value=3.6e-23  Score=215.53  Aligned_cols=155  Identities=19%  Similarity=0.255  Sum_probs=117.3

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHHhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT------------KSFWQFALCRFFVGL  133 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a------------~s~~~l~~~R~l~Gi  133 (493)
                      +..+.+++.+++++|.+++++++|+++||+|||++++++.+++.++.++++++            +.+..++++|+++|+
T Consensus        53 ~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~  132 (479)
T PRK10077         53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI  132 (479)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh
Confidence            56788999999999999999999999999999999999999999999888863            235678999999999


Q ss_pred             cccchhhhhhhhccccccccCccccccccccccccchhHHHH-HHHHHHHHHH-------------HHHHHHHHHHHHHh
Q psy13410        134 SFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLF-FSMILFAFAE-------------AFVYFSQIFITVIP  199 (493)
Q Consensus       134 ~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~-~~~~l~~~~~-------------~~~w~~~~~~~~i~  199 (493)
                      +.|+..+...++++|++|+++|+.....         .+... .+..++..+.             ...||+.+++..++
T Consensus       133 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~---------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~  203 (479)
T PRK10077        133 GVGLASMLSPMYIAEIAPAHIRGKLVSF---------NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIP  203 (479)
T ss_pred             hHhHHhhHHHHHHHhhCChhhhhHHHHH---------HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHH
Confidence            9999999999999999999877433322         11111 1111111111             12389888776554


Q ss_pred             hh----hheeccCCCchhhhhhccCHHHHHHHHHHH
Q psy13410        200 EH----YWCRVPELSHLDYADKEESHEEADTIAESY  231 (493)
Q Consensus       200 ~~----~~~~~pesp~~~~l~~~~~~~~a~~~l~~~  231 (493)
                      .+    ..+++||+|+  |+..+++.+++++.+++.
T Consensus       204 ~~~~~~~~~~l~~s~~--~l~~~~~~~~~~~~~~~~  237 (479)
T PRK10077        204 ALLFLMLLYFVPETPR--YLMSRGKQEQAEGILRKI  237 (479)
T ss_pred             HHHHHHHHHcCCCCcH--HHHHcCCHHHHHHHHHHH
Confidence            43    2567899998  777777777776666554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.91  E-value=4.2e-28  Score=250.72  Aligned_cols=158  Identities=27%  Similarity=0.481  Sum_probs=130.1

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHhhcccchhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK---SFWQFALCRFFVGLSFDNCFTMM  142 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~---s~~~l~~~R~l~Gi~~g~~~~~~  142 (493)
                      ++.+.+++.+..++|..+|++++|+++||+|||++++++.++..+++++.++++   +++.++++|+++|++.|+..++.
T Consensus        44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~  123 (451)
T PF00083_consen   44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS  123 (451)
T ss_pred             hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345688999999999999999999999999999999999999999999999999   99999999999999999999999


Q ss_pred             hhhccccccccCccccccccccccccchhHHHHHHHHH-HHHHH--------HHHHHHHHHHHHHhhh----hheeccCC
Q psy13410        143 YILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMIL-FAFAE--------AFVYFSQIFITVIPEH----YWCRVPEL  209 (493)
Q Consensus       143 ~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l-~~~~~--------~~~w~~~~~~~~i~~~----~~~~~pes  209 (493)
                      ..|+.|..|+++|+....+         .+.....+.+ +....        ...||..+.++.+|.+    ...++|||
T Consensus       124 ~~~~~E~~~~~~R~~~~~~---------~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES  194 (451)
T PF00083_consen  124 PIYISEIAPPKHRGFLSSL---------FQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES  194 (451)
T ss_pred             ccccccccccccccccccc---------cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999544433         2222222211 11111        1349999888887774    36789999


Q ss_pred             CchhhhhhccCHHHHHHHHHHHhcc
Q psy13410        210 SHLDYADKEESHEEADTIAESYIKR  234 (493)
Q Consensus       210 p~~~~l~~~~~~~~a~~~l~~~~~~  234 (493)
                      ||  |+.+++|.+|+++.++++++.
T Consensus       195 P~--wL~~~~~~~~A~~~l~~~~~~  217 (451)
T PF00083_consen  195 PR--WLLSKGRDEEAEKVLRKLRGK  217 (451)
T ss_pred             cc--eeccccccccccccccccccc
Confidence            99  999999999999988886443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.90  E-value=1.4e-22  Score=206.89  Aligned_cols=167  Identities=11%  Similarity=0.112  Sum_probs=125.7

Q ss_pred             cchhhhcccccc---cccCcc--ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHH
Q psy13410         34 TQDTLSTWLNWV---CTQDTL--STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVG  108 (493)
Q Consensus        34 ~~~~~~~~~~w~---~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~  108 (493)
                      |..++..++.|.   +|+.+.  ....+++|+++   +..+.+++.+++++++++++++.|+++||+|||+++..+++++
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGL---SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            334444555544   343333  22247899988   7788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHH--
Q psy13410        109 FIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEA--  186 (493)
Q Consensus       109 ~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~--  186 (493)
                      +++++++++++|++++++.|+++|++.|+..+....++.|++|+++|+.+...        +......+..++..+..  
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~--------~~~~~~~g~~~~~~~~~~l  155 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANAL--------FMIAMPVTMALGLILSGYI  155 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999877443322        11112222222222221  


Q ss_pred             ---------HHHHHHHHHHHHhhh-----hheeccCCCc
Q psy13410        187 ---------FVYFSQIFITVIPEH-----YWCRVPELSH  211 (493)
Q Consensus       187 ---------~~w~~~~~~~~i~~~-----~~~~~pesp~  211 (493)
                               ..||..+.+.+++.+     .++++||+|+
T Consensus       156 ~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       156 LALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence                     259998887655443     3567899985

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09952 shikimate transporter; Provisional

Probab=99.90  E-value=1e-22  Score=209.51  Aligned_cols=128  Identities=18%  Similarity=0.165  Sum_probs=98.9

Q ss_pred             HHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHH--------HHHHHHHHHhhcccchhhhhhhhc
Q psy13410         75 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFW--------QFALCRFFVGLSFDNCFTMMYILG  146 (493)
Q Consensus        75 s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~--------~l~~~R~l~Gi~~g~~~~~~~~~i  146 (493)
                      ++.+++..+|+++.|+++||+|||++++.+.++++++++++++++|+.        .++++|+++|++.|+.++....++
T Consensus        71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~  150 (438)
T PRK09952         71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA  150 (438)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence            456778899999999999999999999999999999999999999987        589999999999999999999999


Q ss_pred             cccccccCccccccccccccccchhHHH-HHHHHHHHH----HH---------HHHHHHHHHHHHHhhhh----heeccC
Q psy13410        147 MPIYKTRNLDFDDVLPHLGEFGRYQKVL-FFSMILFAF----AE---------AFVYFSQIFITVIPEHY----WCRVPE  208 (493)
Q Consensus       147 ~e~~~~~~R~~~~~~~~~g~~g~~~~~~-~~~~~l~~~----~~---------~~~w~~~~~~~~i~~~~----~~~~pe  208 (493)
                      .|++|+++|+.....         .... ..+..++..    +.         ...||..|++++++.++    +..+||
T Consensus       151 ~e~~p~~~rg~~~~~---------~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~e  221 (438)
T PRK09952        151 VESAPKNKKAFYSSG---------VQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEE  221 (438)
T ss_pred             HHhCCCCCCcHHHHH---------HHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999988433222         1111 111122211    11         23599999887776653    345788


Q ss_pred             CCc
Q psy13410        209 LSH  211 (493)
Q Consensus       209 sp~  211 (493)
                      +|+
T Consensus       222 s~~  224 (438)
T PRK09952        222 SAE  224 (438)
T ss_pred             Chh
Confidence            876

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.90  E-value=4.6e-22  Score=194.95  Aligned_cols=289  Identities=16%  Similarity=0.179  Sum_probs=198.3

Q ss_pred             cceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13410         51 LSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFF  130 (493)
Q Consensus        51 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l  130 (493)
                      .++  +.++++.   +....+++.|+|.++.++++|+...+.||+.||++++..+.++.++++++++++||+.++++|++
T Consensus        36 Lp~--iA~dl~v---s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~  110 (394)
T COG2814          36 LPP--IAADLGV---SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL  110 (394)
T ss_pred             hHH--HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            355  8888988   78889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhh-----he
Q psy13410        131 VGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV-YFSQIFITVIPEHY-----WC  204 (493)
Q Consensus       131 ~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~-w~~~~~~~~i~~~~-----~~  204 (493)
                      .|++.|..+++..++.+++.|+++|+.+......|    .......+..++.+++... ||..|++.....++     +.
T Consensus       111 ~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G----~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~  186 (394)
T COG2814         111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTG----LTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWK  186 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHH----HHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999886655442221    3333444556666666555 99999775544432     56


Q ss_pred             eccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCc
Q psy13410        205 RVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFG  284 (493)
Q Consensus       205 ~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  284 (493)
                      .+|  |+  - .++.+..+.++..                                            +  +++      
T Consensus       187 ~lP--~~--~-~~~~~~~~~~~~~--------------------------------------------~--~l~------  209 (394)
T COG2814         187 LLP--PS--E-ISGSLPGPLRTLL--------------------------------------------R--LLR------  209 (394)
T ss_pred             hCC--Cc--c-CCCCCCcchhHHH--------------------------------------------H--Hhc------
Confidence            777  32  0 0000000000000                                            0  222      


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCC
Q psy13410        285 RYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGIT  364 (493)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~  364 (493)
                      +.+...........+...+..|.  |..  |                                                 
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ft--Yi~--P-------------------------------------------------  236 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYT--YIR--P-------------------------------------------------  236 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHH--hHH--H-------------------------------------------------
Confidence            11122122222222222222222  110  1                                                 


Q ss_pred             CCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHH
Q psy13410        365 KADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGF  444 (493)
Q Consensus       365 ~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~  444 (493)
                                               .+....++   +....+++..+++++.++|++++|+++|| +.|+.+.....+.+
T Consensus       237 -------------------------~L~~v~g~---s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a  287 (394)
T COG2814         237 -------------------------FLESVAGF---SVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLA  287 (394)
T ss_pred             -------------------------HHHHccCC---CHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHH
Confidence                                     11111111   23478999999999999999999999999 88888888877777


Q ss_pred             HHHHHHHhhh-hHHHHHHHHHHHhccccchhhhHhhhhhcccCC
Q psy13410        445 IFGVVTAFTK-SFWQFALCRFFVGLSFDNCFTMMYILETNRKPF  487 (493)
Q Consensus       445 i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~  487 (493)
                      +..+.+.+.. +.....+..++.|+..........+..++..|+
T Consensus       288 ~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~  331 (394)
T COG2814         288 LALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPD  331 (394)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC
Confidence            7777776654 445555566667887766666666666665554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.88  E-value=4.5e-21  Score=195.42  Aligned_cols=287  Identities=17%  Similarity=0.217  Sum_probs=190.3

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++++.   +..+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++.+++++++.+++.|+++|++.
T Consensus        41 ~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  117 (406)
T PRK11551         41 MAQEFGL---DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGL  117 (406)
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhH
Confidence            6778887   6778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHH----HHHHHHHH-----HHHHHHHHHHhhh-----
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMIL----FAFAEAFV-----YFSQIFITVIPEH-----  201 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l----~~~~~~~~-----w~~~~~~~~i~~~-----  201 (493)
                      +...+....++.|++|+++|+.            ..+....+..+    +..+....     |+..+.+..+..+     
T Consensus       118 ~~~~~~~~~~~~~~~~~~~r~~------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK11551        118 GGALPNLIALTSEAVGPRLRGT------------AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999886633            33332222222    22222111     8877765433221     


Q ss_pred             hheeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcC
Q psy13410        202 YWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLG  281 (493)
Q Consensus       202 ~~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  281 (493)
                      ...++||+|+  +..++.+.++.+...                                           +.  .++.  
T Consensus       186 ~~~~l~~~~~--~~~~~~~~~~~~~~~-------------------------------------------~~--~~~~--  216 (406)
T PRK11551        186 LMRWLPESRA--FAQAAGAGKQRAPVL-------------------------------------------RA--LFGE--  216 (406)
T ss_pred             HHHhCCCChh--HHhccCcchhhhhhH-------------------------------------------HH--Hhhh--
Confidence            2445788875  222111100000000                                           00  1110  


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccC
Q psy13410        282 EFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGS  361 (493)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~  361 (493)
                        .+......  +....+......+.  ...+.|.                                             
T Consensus       217 --~~~~~~~~--~~~~~~~~~~~~~~--~~~~~p~---------------------------------------------  245 (406)
T PRK11551        217 --GRATATLL--LWISYFFTLIVLYF--LLNWLPS---------------------------------------------  245 (406)
T ss_pred             --hhhhHHHH--HHHHHHHHHHHHHH--HHHHHHH---------------------------------------------
Confidence              00001111  11111111111111  1222232                                             


Q ss_pred             CCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHH
Q psy13410        362 GITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNL  441 (493)
Q Consensus       362 ~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~  441 (493)
                                                   ...+.++   +....++......++.+++.++.|+++||+|||+.+..+.+
T Consensus       246 -----------------------------~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  293 (406)
T PRK11551        246 -----------------------------LLVGQGL---SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYA  293 (406)
T ss_pred             -----------------------------HHHhCCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence                                         0000011   12356778888899999999999999999999999888777


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410        442 VGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG  489 (493)
Q Consensus       442 ~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~  489 (493)
                      ..+++.+...+.++.....+..++.|++.++..+..++++.|.+|++-
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  341 (406)
T PRK11551        294 GILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV  341 (406)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh
Confidence            667766666666676666677778888877888889999999999754

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.88  E-value=2.8e-21  Score=198.24  Aligned_cols=162  Identities=17%  Similarity=0.283  Sum_probs=121.1

Q ss_pred             cccccchhhhcccccccccC-----ccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHH
Q psy13410         30 NWVCTQDTLSTWLNWVCTQD-----TLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLT  104 (493)
Q Consensus        30 ~~~~~~~~~~~~~~w~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~  104 (493)
                      ++.+++....+++++.++..     .+..+.+.+++++   +..+.+++.+++.++..++++++|+++||+|||+++..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~   89 (426)
T PRK12307         13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGL---TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWS   89 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            34455556666666665421     1122226778887   677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHH
Q psy13410        105 NLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFA  184 (493)
Q Consensus       105 ~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~  184 (493)
                      .++.+++.++.+++++++.++++|+++|++.|+.++....++.|++|+++|+.+...        .......+..++..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~--------~~~~~~lg~~~~~~l  161 (426)
T PRK12307         90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAF--------LVSGFGIGNIIAAYF  161 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhH--------HHHHHhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999877443322        111122222233323


Q ss_pred             HHH-----HHHHHHHHHHHhhhh
Q psy13410        185 EAF-----VYFSQIFITVIPEHY  202 (493)
Q Consensus       185 ~~~-----~w~~~~~~~~i~~~~  202 (493)
                      .+.     .||..+.+..++.++
T Consensus       162 ~~~l~~~~~w~~~f~i~~~~~~~  184 (426)
T PRK12307        162 MPSFAEAYGWRAAFFVGLLPVLL  184 (426)
T ss_pred             HHHHcccCCHHHHHHHHHHHHHH
Confidence            222     288888776655544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.88  E-value=1.3e-21  Score=203.03  Aligned_cols=122  Identities=11%  Similarity=-0.038  Sum_probs=101.9

Q ss_pred             hhhcccccc---cccCcc--ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHH
Q psy13410         37 TLSTWLNWV---CTQDTL--STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIF  111 (493)
Q Consensus        37 ~~~~~~~w~---~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~  111 (493)
                      +..++++|.   .|+..+  ..+.+.+|+++   +..+.+++.+++++++++++++.|+++||+|||+++.+++++++++
T Consensus        31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~  107 (467)
T PRK09556         31 YLVVFIGYLTMYLIRKNFKAAQNDMISTYGL---STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAIC  107 (467)
T ss_pred             HHHHHHHHHHHHHHhcChhhhhHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHH
Confidence            444445554   244443  22237888888   7788999999999999999999999999999999999998888887


Q ss_pred             HHHHHh-----cccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccc
Q psy13410        112 GVITAF-----TKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVL  161 (493)
Q Consensus       112 ~~~~a~-----a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~  161 (493)
                      .++.++     ++|++.+++.|+++|++.|...+....+++|++|+++|+.+..+
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi  162 (467)
T PRK09556        108 MLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGF  162 (467)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEe
Confidence            776665     68999999999999999999999999999999999999777655

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.88  E-value=8.3e-21  Score=190.31  Aligned_cols=150  Identities=12%  Similarity=0.024  Sum_probs=106.7

Q ss_pred             cccccCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHH
Q psy13410         44 WVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQ  123 (493)
Q Consensus        44 w~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~  123 (493)
                      |..-.+..+.  +.+|+++   +..+.+++.+.+++++.+++++.|+++||+|||+++..+.+....+.+....++|+++
T Consensus         7 ~~~~~~~lp~--i~~~~~~---s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~   81 (368)
T TIGR00903         7 WVTFSPVLSL--VAEDIDV---SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW   81 (368)
T ss_pred             HHHHHhhHHH--HHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            4433344455  8889988   6778999999999999999999999999999999877666555554443334489999


Q ss_pred             HHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHH---------HHHHHHH
Q psy13410        124 FALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF---------VYFSQIF  194 (493)
Q Consensus       124 l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~---------~w~~~~~  194 (493)
                      ++++|+++|++.|. .......++|++|+++|+.            ..+....+..++..+.+.         .||..++
T Consensus        82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~------------a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~  148 (368)
T TIGR00903        82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDL------------VISLLSFAMYLGIIFALAAGLKIYTAGGLQLLII  148 (368)
T ss_pred             HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            99999999999986 5666677799999986633            333333333333322222         2998887


Q ss_pred             HHHH-hhh----hheeccCCCc
Q psy13410        195 ITVI-PEH----YWCRVPELSH  211 (493)
Q Consensus       195 ~~~i-~~~----~~~~~pesp~  211 (493)
                      +.++ +.+    .++.+||+|+
T Consensus       149 ~~~~l~~~~~~~~~~~lp~~p~  170 (368)
T TIGR00903       149 PIAAVAAAGIILVLAALPALPF  170 (368)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCC
Confidence            7333 222    2567899986

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.88  E-value=2e-21  Score=201.31  Aligned_cols=155  Identities=19%  Similarity=0.259  Sum_probs=116.2

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhhcccchhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT---KSFWQFALCRFFVGLSFDNCFTMM  142 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a---~s~~~l~~~R~l~Gi~~g~~~~~~  142 (493)
                      +..+.+++.+++.++.+++++++|+++||+|||++++++.+++.++.++++++   .+++.++++|+++|++.|...+..
T Consensus        69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  148 (481)
T TIGR00879        69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALV  148 (481)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHH
Confidence            36889999999999999999999999999999999999999999999999654   456689999999999999999999


Q ss_pred             hhhccccccccCccccccccccccccchhHHHHHHHHHHHHHH---HH-----HHHHHHHHHHHhhh----hheeccCCC
Q psy13410        143 YILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAE---AF-----VYFSQIFITVIPEH----YWCRVPELS  210 (493)
Q Consensus       143 ~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~---~~-----~w~~~~~~~~i~~~----~~~~~pesp  210 (493)
                      ..++.|++|+++|+.+...        .......+..++..+.   ..     .||+.+.+.+++.+    ..+++||+|
T Consensus       149 ~~~i~~~~~~~~r~~~~~~--------~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~  220 (481)
T TIGR00879       149 PMYLSEIAPKALRGALTSL--------YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESP  220 (481)
T ss_pred             HHHHHccCChhhhhhhhhH--------HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            9999999999988433322        1122233333444433   11     28888776544433    256789999


Q ss_pred             chhhhhhccCHHHHHHHHHH
Q psy13410        211 HLDYADKEESHEEADTIAES  230 (493)
Q Consensus       211 ~~~~l~~~~~~~~a~~~l~~  230 (493)
                      +  ++..+++.+++.+..++
T Consensus       221 ~--~~~~~~~~~~~~~~~~~  238 (481)
T TIGR00879       221 R--WLVGKGRVEEARKSLAR  238 (481)
T ss_pred             H--HHHHcCChHHHHHHHHH
Confidence            7  66555555554444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03545 putative arabinose transporter; Provisional

Probab=99.87  E-value=2.2e-20  Score=189.45  Aligned_cols=101  Identities=9%  Similarity=0.055  Sum_probs=94.6

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+++|.   +..+.+++.+.+.+++.++++++|+++||+|||+++..+.++.+++++++++++|+++++++|+++|++.
T Consensus        35 l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~  111 (390)
T PRK03545         35 IAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAH  111 (390)
T ss_pred             HHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            7788888   7788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      +...+...+++.|++|+++|+.+.
T Consensus       112 ~~~~~~~~~~i~~~~~~~~r~~~~  135 (390)
T PRK03545        112 AIFWSITASLAIRVAPAGKKAQAL  135 (390)
T ss_pred             HHHHHHHHHHHHHhCChhhhhhHH
Confidence            999999999999999998775443

>TIGR00895 2A0115 benzoate transport

Probab=99.87  E-value=2e-20  Score=189.36  Aligned_cols=318  Identities=19%  Similarity=0.263  Sum_probs=192.9

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++++.   +..+.+++.+++.++..++.++.|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.
T Consensus        43 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  119 (398)
T TIGR00895        43 ISAEWGL---DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGL  119 (398)
T ss_pred             HhhccCC---CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhccc
Confidence            6677776   6677999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH-----HHHHHHHHH-Hh----hhhhee
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV-----YFSQIFITV-IP----EHYWCR  205 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~-----w~~~~~~~~-i~----~~~~~~  205 (493)
                      |...+...+++.|++|+++|+.+...        .......+..++..+.+..     |+..+.+.+ +.    .+...+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~r~~~~~~--------~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  191 (398)
T TIGR00895       120 GGLMPNLNALVSEYAPKRFRGTAVGL--------MFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRF  191 (398)
T ss_pred             ccchhhHHHHHHHHcCHHhhchhHhh--------HhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHh
Confidence            99999999999999999877443322        1111222223333333222     665554432 22    123557


Q ss_pred             ccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCch
Q psy13410        206 VPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGR  285 (493)
Q Consensus       206 ~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  285 (493)
                      +||+++  +..++ ++++..+..++........++      .     +.+++..+   ....+...+.  +++     .+
T Consensus       192 ~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~---~~~~~~~~~~--~~~-----~~  247 (398)
T TIGR00895       192 LPESID--FLVSK-RPETVRRIVNAIAPQMQAEAQ------S-----ALPEQKAT---QGTKRSVFKA--LFQ-----GK  247 (398)
T ss_pred             CCCCCh--HHHhc-CHHHHHHHHHHHHHhcccccc------c-----cccccccc---cchhhHHHHH--Hhc-----ch
Confidence            899886  44333 344444434333222111100      0     00000000   0000001111  111     11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCC
Q psy13410        286 YQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITK  365 (493)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~  365 (493)
                      ..+.... +....+......+.  ...+.|.                                                 
T Consensus       248 ~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~-------------------------------------------------  275 (398)
T TIGR00895       248 TARITVL-LWLLYFMLLVGVYF--LTNWLPK-------------------------------------------------  275 (398)
T ss_pred             hHHHHHH-HHHHHHHHHHHHHH--HHHHHHH-------------------------------------------------
Confidence            1111111 11111111111111  1111121                                                 


Q ss_pred             CCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHH
Q psy13410        366 ADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFI  445 (493)
Q Consensus       366 ~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i  445 (493)
                                               ...+.+.   +....++...+..++.+++.++.|+++||+|||..+... .+.++
T Consensus       276 -------------------------~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~  326 (398)
T TIGR00895       276 -------------------------LMVELGF---SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLGAV  326 (398)
T ss_pred             -------------------------HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHH
Confidence                                     0001111   123567888888999999999999999999999544443 33333


Q ss_pred             HHHHHHh-hhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410        446 FGVVTAF-TKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG  489 (493)
Q Consensus       446 ~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~  489 (493)
                      ...+... ..+....++..++.|++.+...+...+++.|.+|++-
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  371 (398)
T TIGR00895       327 FAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI  371 (398)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence            3333332 4566666778888999998899999999999999754

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.86  E-value=1.5e-20  Score=188.79  Aligned_cols=98  Identities=13%  Similarity=0.071  Sum_probs=91.0

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+++++   +..+.+++.+++.++.+++++++|+++||+|||+++..+.++..++.+++++++|++.+++.|++.|++.
T Consensus        29 ~~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  105 (377)
T TIGR00890        29 LGRYFGV---GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGV  105 (377)
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            7888888   7888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDF  157 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~  157 (493)
                      |..++....++.|++|+ +|+.
T Consensus       106 ~~~~~~~~~~~~~~~~~-~~~~  126 (377)
T TIGR00890       106 GIAYGIALNTAVKWFPD-KRGL  126 (377)
T ss_pred             HHHHHhHHHHHHHHcCc-ccHH
Confidence            99988888899999874 4533

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.86  E-value=2.8e-20  Score=194.36  Aligned_cols=141  Identities=13%  Similarity=0.005  Sum_probs=109.9

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+|+|.   +..+.+|+.+.|.++.+++.+++|+++||+|||++++.+.+++.++++++++++|++.++++|+++|+|.
T Consensus        32 i~~~l~~---s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~  108 (495)
T PRK14995         32 LSMTLGA---SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGA  108 (495)
T ss_pred             HHHHhCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            7888887   6677999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccc-cccCccccccccccccccchhHHHHHHHHH----HHHHHHHH-----HHHHHHHHHHhhh----
Q psy13410        136 DNCFTMMYILGMPIY-KTRNLDFDDVLPHLGEFGRYQKVLFFSMIL----FAFAEAFV-----YFSQIFITVIPEH----  201 (493)
Q Consensus       136 g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l----~~~~~~~~-----w~~~~~~~~i~~~----  201 (493)
                      |+..+.....+.+.+ |+++|            +...+.......+    +..+++.+     ||+.|++.....+    
T Consensus       109 ~~~~~~~~~~l~~~~~~~~~r------------~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~  176 (495)
T PRK14995        109 AMIVPATLAGIRATFTEEKQR------------NMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMG  176 (495)
T ss_pred             HHHHHHHHHHHHHHcCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Confidence            999988888887776 55545            3344443333333    33333322     9988876432222    


Q ss_pred             -hheeccCCCc
Q psy13410        202 -YWCRVPELSH  211 (493)
Q Consensus       202 -~~~~~pesp~  211 (493)
                       ..+.+||.|.
T Consensus       177 l~~~~l~~~~~  187 (495)
T PRK14995        177 LTARYVPRQAG  187 (495)
T ss_pred             HHHHhCCCCCC
Confidence             2455777653

>PRK15075 citrate-proton symporter; Provisional

Probab=99.86  E-value=2.3e-20  Score=191.91  Aligned_cols=121  Identities=17%  Similarity=0.094  Sum_probs=91.8

Q ss_pred             hhhhccccccc---ccCcc--ceeeecccccccccccchh-hHHHHHH-----HHHHHhhhhhhhhhhcccCChhHHHHH
Q psy13410         36 DTLSTWLNWVC---TQDTL--STWALTPQLNWVCTQDTLS-TWAQAFF-----FCGAIVGGLVFGWVADRFGRVPALVLT  104 (493)
Q Consensus        36 ~~~~~~~~w~~---~~~~~--~~~~i~~~~~~~~~~~~~~-~~~~s~~-----~lg~~ig~~i~g~l~Dr~GRr~~l~~~  104 (493)
                      .....+++|.+   |...+  ..+.+.+|++.+   +.+. .+..+..     +++..+|++++|+++||+|||++++.+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPA---GNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            44455555553   43333  222377888763   3333 3333332     344468999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccHH--------HHHHHHHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410        105 NLVGFIFGVITAFTKSFW--------QFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       105 ~~~~~i~~~~~a~a~s~~--------~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      .+++.+++++++++++++        .++++|+++|++.|...+....+++|++|+++|+...
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~  155 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT  155 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence            999999999999999987        4699999999999999999999999999999885444

>PRK03699 putative transporter; Provisional

Probab=99.86  E-value=2.6e-20  Score=189.16  Aligned_cols=285  Identities=11%  Similarity=0.130  Sum_probs=186.0

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+++++   +..+.+++.+.+.+++.++++++|+++||+|||+++..+.++..++.++++++++++.+++.|+++|++.
T Consensus        33 i~~~~~~---s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~  109 (394)
T PRK03699         33 IAEYFNL---PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVS  109 (394)
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhh
Confidence            7788887   6778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhh---heec
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEA------FVYFSQIFITVIPEHY---WCRV  206 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~------~~w~~~~~~~~i~~~~---~~~~  206 (493)
                      |...+....++.|++|+++|+.+...        .......++.++.....      ..||..+....++.+.   ..+.
T Consensus       110 g~~~~~~~~~i~~~~~~~~r~~~~~~--------~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~  181 (394)
T PRK03699        110 GITMSIGTFLITHVYEGKQRGSRLLF--------TDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF  181 (394)
T ss_pred             HhhccchhHHhhhhcccchHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998777332211        11111122222222211      2388888765544332   1111


Q ss_pred             cCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchH
Q psy13410        207 PELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRY  286 (493)
Q Consensus       207 pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  286 (493)
                      .+.|+    .++.+             .+  ++                ++.            .++  .+      .+ 
T Consensus       182 ~~~p~----~~~~~-------------~~--~~----------------~~~------------~~~--~~------~~-  205 (394)
T PRK03699        182 SEFPA----LGKHA-------------PK--AD----------------KPV------------AKE--KW------GI-  205 (394)
T ss_pred             cCCcc----ccccC-------------cc--cc----------------Ccc------------ccc--cC------Ch-
Confidence            22221    00000             00  00                000            000  00      01 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCC
Q psy13410        287 QKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKA  366 (493)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~  366 (493)
                         .+..+.+..+......+.  +..+.|.                                                  
T Consensus       206 ---~~~~~~~~~~~~~~~~~~--~~~~~p~--------------------------------------------------  230 (394)
T PRK03699        206 ---GVLFLAIAALLYILAQLT--FISWVPE--------------------------------------------------  230 (394)
T ss_pred             ---HHHHHHHHHHHHHHHHHH--HHHHHHH--------------------------------------------------
Confidence               111111222222222222  3334443                                                  


Q ss_pred             CCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHH
Q psy13410        367 DPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIF  446 (493)
Q Consensus       367 ~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~  446 (493)
                                             .+..++++   +..+.+++.+.+.++.++|.++.|+++||++||+.+.....+.++.
T Consensus       231 -----------------------~l~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        231 -----------------------YAQKKFGM---SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVL  284 (394)
T ss_pred             -----------------------HHHHHcCC---ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence                                   01111121   1335777888888999999999999999999999988777776666


Q ss_pred             HHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCC
Q psy13410        447 GVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFP  488 (493)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~  488 (493)
                      ..+....++.....+..++.|++.++.++...++..|..|.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~  326 (394)
T PRK03699        285 MYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA  326 (394)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            666666666666666778888888888888888888877754

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.86  E-value=5.1e-20  Score=186.69  Aligned_cols=137  Identities=13%  Similarity=0.125  Sum_probs=114.9

Q ss_pred             hhhhhheeecccccccccc-------------hhhhcccccccccCccceeeecc-cccccccccchhhHHHHHHHHHHH
Q psy13410         17 VQLLTRWTLDLELNWVCTQ-------------DTLSTWLNWVCTQDTLSTWALTP-QLNWVCTQDTLSTWAQAFFFCGAI   82 (493)
Q Consensus        17 ~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~w~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~s~~~lg~~   82 (493)
                      -+...+|++.|+.-|.+..             .+..++..|..-.+....  +.+ |+++   +..+.+++.+++.++++
T Consensus        10 ~~~~~~w~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~--~~~~~~~l---s~~q~g~l~ai~~l~~a   84 (462)
T PRK15034         10 RYLLRDWKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVN--LNKIGFNF---TTDQLFLLTALPSVSGA   84 (462)
T ss_pred             cccccCCCCCChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhcCC---CHHHHHHHHHHHHHHHH
Confidence            4566789999999995441             133566777654444333  544 7888   77789999999999999


Q ss_pred             hhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccc
Q psy13410         83 VGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT-----KSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDF  157 (493)
Q Consensus        83 ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a-----~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~  157 (493)
                      ++.++.|++.||+|.|+++.++.+++++.+++.+++     +|++.+++.|++.|++ |+.++.....+++++|+++|+.
T Consensus        85 l~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~  163 (462)
T PRK15034         85 LLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGS  163 (462)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHH
Confidence            999999999999999999999999999999999987     8999999999999998 8899999999999999987754


Q ss_pred             cc
Q psy13410        158 DD  159 (493)
Q Consensus       158 ~~  159 (493)
                      +.
T Consensus       164 A~  165 (462)
T PRK15034        164 AL  165 (462)
T ss_pred             HH
Confidence            44

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.86  E-value=4e-20  Score=186.51  Aligned_cols=99  Identities=19%  Similarity=0.324  Sum_probs=93.1

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++++.   +..+.+++.+++.++..++.+++|+++||+|||+++..+.++..++.++.+++++++.++++|++.|++.
T Consensus        20 ~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   96 (399)
T TIGR00893        20 LQEDLGL---SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAE   96 (399)
T ss_pred             HHHhhCC---ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            6777877   6778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDF  157 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~  157 (493)
                      |...+....++.|++|+++|+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~r~~  118 (399)
T TIGR00893        97 APFFPGIILIVASWFPASERAT  118 (399)
T ss_pred             HhhhhHHHHHHHHhCCHHHHHH
Confidence            9999999999999999987743

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.85  E-value=1e-19  Score=184.61  Aligned_cols=96  Identities=7%  Similarity=0.009  Sum_probs=91.6

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+|+++   +..+.+++.+++.+++.+++++.|+++||+|||+++..+.++++++.+++++++|++.++++|+++|++.
T Consensus        35 i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~  111 (393)
T PRK09705         35 LRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGI  111 (393)
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHH
Confidence            8889988   7888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCc
Q psy13410        136 DNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R  155 (493)
                      |...+....++.+++| ++|
T Consensus       112 ~~~~~~~~~~~~~~~~-~~~  130 (393)
T PRK09705        112 GIIQAVMPSVIKRRFQ-QRT  130 (393)
T ss_pred             HHHhhhhhHHHHHHcc-ccc
Confidence            9999999999999987 555

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.84  E-value=3e-19  Score=180.25  Aligned_cols=98  Identities=19%  Similarity=0.320  Sum_probs=92.6

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++++.   +..+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.
T Consensus        31 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  107 (385)
T TIGR00710        31 IAADLST---PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGA  107 (385)
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcch
Confidence            6788887   6778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCcc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLD  156 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~  156 (493)
                      +...+...+++.|++|+++|+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~  128 (385)
T TIGR00710       108 SAGSVISQALVRDIYPGEELS  128 (385)
T ss_pred             hHHHHHHHHHHHHhcCcHHHH
Confidence            999999999999999988763

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.84  E-value=4.3e-19  Score=177.39  Aligned_cols=286  Identities=16%  Similarity=0.181  Sum_probs=183.9

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHhhcccchhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK-----SFWQFALCRFFVGLSFDNCFT  140 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~-----s~~~l~~~R~l~Gi~~g~~~~  140 (493)
                      +..+.+++.+++.++..++++++|+++||+|||++++.+.++..++.++.++++     +++.+++.|+++|++.+...+
T Consensus        32 s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  111 (365)
T TIGR00900        32 SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTP  111 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            667899999999999999999999999999999999999999999999988887     999999999999999999999


Q ss_pred             hhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhh------heeccCC
Q psy13410        141 MMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAE-----AFVYFSQIFITVIPEHY------WCRVPEL  209 (493)
Q Consensus       141 ~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~-----~~~w~~~~~~~~i~~~~------~~~~pes  209 (493)
                      ...+++.|++|+++|+.....        .......+..++..+.     ...||..+.+..+..++      ....||.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (365)
T TIGR00900       112 AYQAMLPDLVPEEQLTQANSL--------SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPEL  183 (365)
T ss_pred             HHHHHHHhcCCHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            999999999999877433322        1111112222222222     22388777665443322      1222333


Q ss_pred             CchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchHHHH
Q psy13410        210 SHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKV  289 (493)
Q Consensus       210 p~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  289 (493)
                      ++    .++.+.+  ++..++                                    ....++.  +++     .+..+.
T Consensus       184 ~~----~~~~~~~--~~~~~~------------------------------------~~~~~~~--~~~-----~~~~~~  214 (365)
T TIGR00900       184 AA----SEIQALS--NAVLRD------------------------------------TREGIKF--VLK-----NPLLRT  214 (365)
T ss_pred             CC----ccccccc--hhHHHH------------------------------------HHhHHHH--HHc-----CcHHHH
Confidence            21    0000000  000000                                    0001112  222     111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCC
Q psy13410        290 LFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPS  369 (493)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~  369 (493)
                      ...    ..+........ ....+.|.                                                     
T Consensus       215 ~~~----~~~~~~~~~~~-~~~~~~~~-----------------------------------------------------  236 (365)
T TIGR00900       215 LLL----LALLFNLVFAP-AIVALFPY-----------------------------------------------------  236 (365)
T ss_pred             HHH----HHHHHHHHHHH-HHHHHhHH-----------------------------------------------------
Confidence            111    11111111111 01112221                                                     


Q ss_pred             CCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHH
Q psy13410        370 WPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVV  449 (493)
Q Consensus       370 ~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~  449 (493)
                                 |         ....++.   +..+.++......++.+++.++.+++.||++||+.+..+.++.+++.+.
T Consensus       237 -----------~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  293 (365)
T TIGR00900       237 -----------V---------QSKYLGR---GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV  293 (365)
T ss_pred             -----------H---------HHHHhCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence                       0         0000111   2336788888899999999999999999999999988887777777777


Q ss_pred             HHhhhh-HHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410        450 TAFTKS-FWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG  489 (493)
Q Consensus       450 ~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~  489 (493)
                      ..+.++ .+...+..++.|++.+...+...+++.|.+|++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  334 (365)
T TIGR00900       294 VGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL  334 (365)
T ss_pred             HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            776664 6777778889999988888999999999999753

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.84  E-value=9.9e-20  Score=187.23  Aligned_cols=99  Identities=17%  Similarity=0.170  Sum_probs=92.5

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+++++   +..+.+++.+++.++.++++++.|+++||+|||+++.++.++++++.++.++++|++.+++.|++.|++.
T Consensus        49 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~  125 (434)
T PRK11663         49 MLADLGL---SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQ  125 (434)
T ss_pred             HHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            6777887   6778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDF  157 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~  157 (493)
                      |...+...+++.|++|+++|+.
T Consensus       126 g~~~~~~~~~~~~~~~~~~rg~  147 (434)
T PRK11663        126 GWGWPVCAKLLTAWYSRTERGG  147 (434)
T ss_pred             HccchHHHHHHHHhCCHHHHHH
Confidence            9999999999999999986633

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.84  E-value=1.7e-19  Score=181.13  Aligned_cols=103  Identities=15%  Similarity=0.076  Sum_probs=95.5

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++++.   +..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.+++++++.+++.|++.|++.
T Consensus        21 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   97 (379)
T TIGR00881        21 LVEEIGL---SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQ   97 (379)
T ss_pred             HHHHhCC---CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence            6777777   6778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccccccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDDVL  161 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~~~  161 (493)
                      |...+...+++.|++|+++|+.....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~r~~~~~~  123 (379)
T TIGR00881        98 GMGWPPCGRTVTKWFSRSERGTWVSF  123 (379)
T ss_pred             cccCCchHHHHHHhcCHhhheeeEee
Confidence            99999999999999999988655433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.83  E-value=2e-19  Score=187.54  Aligned_cols=97  Identities=12%  Similarity=0.254  Sum_probs=91.8

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+++|.   +..+.+|+.+.+.++..++.+++|+++||+|||++++.+.+++.++++++++++|++.++++|+++|++.
T Consensus        28 ~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~  104 (485)
T TIGR00711        28 IAGDLGS---SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGG  104 (485)
T ss_pred             HHHhcCC---ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhh
Confidence            6777776   5677999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCc
Q psy13410        136 DNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R  155 (493)
                      |...+...+++.|++|+++|
T Consensus       105 ~~~~~~~~~~i~~~~~~~~r  124 (485)
T TIGR00711       105 GPLIPLSFSTLLNIYPPEKR  124 (485)
T ss_pred             hhHHHHHHHHHHHHCCHHHH
Confidence            99999999999999999866

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.83  E-value=9.6e-20  Score=189.29  Aligned_cols=100  Identities=17%  Similarity=0.173  Sum_probs=89.4

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+++++   +..+.+++.+++.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|+++|++.
T Consensus        62 l~~~~gl---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  138 (476)
T PLN00028         62 IRDNLNL---TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL  138 (476)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            7888888   6777899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhhhhhhhccccccccCccccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      +... ....+++|++|+++|+.+.
T Consensus       139 ~~~~-~~~~~i~~~~~~~~rg~a~  161 (476)
T PLN00028        139 ATFV-SCQYWMSTMFNGKIVGTAN  161 (476)
T ss_pred             HhhH-HHHHHHHHhcChhheeHHH
Confidence            7654 4566889999998775444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.83  E-value=9.6e-19  Score=177.52  Aligned_cols=99  Identities=15%  Similarity=0.188  Sum_probs=93.3

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++++.   +..+.++..+++.++..++++++|+++||+|||++++.+.++.+++.++++++++++.+++.|+++|++.
T Consensus        46 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  122 (394)
T PRK10213         46 MAQDLGI---SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL  122 (394)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence            6788887   6778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDF  157 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~  157 (493)
                      |...+...+++.|++|+++|+.
T Consensus       123 g~~~~~~~~~i~~~~~~~~~~~  144 (394)
T PRK10213        123 GGFWAMSASLTMRLVPPRTVPK  144 (394)
T ss_pred             HHHHHHHHHHHHHHcCHhHHHH
Confidence            9999999999999999987743

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.83  E-value=3.8e-19  Score=179.59  Aligned_cols=81  Identities=25%  Similarity=0.304  Sum_probs=73.4

Q ss_pred             HHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHH--------HHHHHHHHHhhcccchhhhhhhhccc
Q psy13410         77 FFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFW--------QFALCRFFVGLSFDNCFTMMYILGMP  148 (493)
Q Consensus        77 ~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~--------~l~~~R~l~Gi~~g~~~~~~~~~i~e  148 (493)
                      .+++..+++++.|+++||+|||++++.+.++..++.++++++++++        .+++.|+++|++.|...+....++.|
T Consensus        44 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~  123 (394)
T TIGR00883        44 GFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE  123 (394)
T ss_pred             HHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence            4445567999999999999999999999999999999999999976        48999999999999999999999999


Q ss_pred             cccccCccc
Q psy13410        149 IYKTRNLDF  157 (493)
Q Consensus       149 ~~~~~~R~~  157 (493)
                      ++++++|+.
T Consensus       124 ~~~~~~r~~  132 (394)
T TIGR00883       124 YAPPGKRGF  132 (394)
T ss_pred             cCCcccchH
Confidence            999988843

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.83  E-value=8.9e-19  Score=177.13  Aligned_cols=97  Identities=15%  Similarity=0.252  Sum_probs=91.5

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+|+|.   +..+.+++.+++.++..++++++|+++||+|||+++..+.++++++.+++++++|++.+++.|+++|++.
T Consensus        29 ~~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~  105 (382)
T PRK10091         29 LAHDVGI---SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPH  105 (382)
T ss_pred             HHHHcCC---CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence            6788887   6777999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCc
Q psy13410        136 DNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R  155 (493)
                      |...+....++.|++++++|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~  125 (382)
T PRK10091        106 GAFFGVGAIVLSKIIKPGKV  125 (382)
T ss_pred             HHHHHHHHHHHHHhCChHHh
Confidence            99999989999999998766

>PRK10133 L-fucose transporter; Provisional

Probab=99.83  E-value=5.3e-19  Score=181.61  Aligned_cols=112  Identities=9%  Similarity=0.096  Sum_probs=96.9

Q ss_pred             hcccccccccCcc----ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHH
Q psy13410         39 STWLNWVCTQDTL----STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVI  114 (493)
Q Consensus        39 ~~~~~w~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~  114 (493)
                      ..++.|..+....    +.  +++++++   +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++++++
T Consensus        33 ~~~~~~~~~~~~~~~~~p~--i~~~~~~---s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l  107 (438)
T PRK10133         33 SLFFLWAVANNLNDILLPQ--FQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL  107 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            4456666543222    44  7888888   7788999999999999999999999999999999999999999999988


Q ss_pred             H---HhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCc
Q psy13410        115 T---AFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       115 ~---a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      +   +++++++.++++|+++|+|.|...+....++.|+.++++|
T Consensus       108 ~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~  151 (438)
T PRK10133        108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSG  151 (438)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhH
Confidence            5   5689999999999999999999999999999998776655

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.83  E-value=2.9e-19  Score=187.03  Aligned_cols=167  Identities=15%  Similarity=0.280  Sum_probs=121.7

Q ss_pred             cccchhhhccccccccc-------CccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHH
Q psy13410         32 VCTQDTLSTWLNWVCTQ-------DTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLT  104 (493)
Q Consensus        32 ~~~~~~~~~~~~w~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~  104 (493)
                      .+|+.+...++++..+.       ...+.  +.+++|+   +..+.+++.+.+.++..+++++.|+++||+|||++++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   91 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTE--VQGEFGL---TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS   91 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            44555555555554321       12233  6788887   677799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHH
Q psy13410        105 NLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFA  184 (493)
Q Consensus       105 ~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~  184 (493)
                      .++.+++.++.+++++++.+++.|++.|++.++.++....++.|++|+++|+.+...        .......+..++..+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--------~~~~~~~g~~~~~~~  163 (496)
T PRK03893         92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGF--------LISGFSIGAVVAAQV  163 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999877332211        111122222223322


Q ss_pred             HHHH-----HHHHHHHHHHhhhh----heeccCCCc
Q psy13410        185 EAFV-----YFSQIFITVIPEHY----WCRVPELSH  211 (493)
Q Consensus       185 ~~~~-----w~~~~~~~~i~~~~----~~~~pesp~  211 (493)
                      ....     ||..+.+..++.+.    ...+||+++
T Consensus       164 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~  199 (496)
T PRK03893        164 YSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAED  199 (496)
T ss_pred             HHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence            2222     88888776555443    234566654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.83  E-value=4.5e-19  Score=179.90  Aligned_cols=97  Identities=19%  Similarity=0.169  Sum_probs=86.2

Q ss_pred             cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhccc
Q psy13410         57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFD  136 (493)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g  136 (493)
                      ..+++.   +..+.+|+.+.+.+++.++.+++|+++||+|||++++.+.+++++++++++++.+.   ++.|+++|++.|
T Consensus        30 ~~~~~~---s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a  103 (393)
T PRK11195         30 LKELHY---PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAA  103 (393)
T ss_pred             HHHcCC---cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            445554   56678999999999999999999999999999999999999999999888887664   789999999999


Q ss_pred             chhhhhhhhccccccccCccccc
Q psy13410        137 NCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       137 ~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      ...|+..+++.|++|+++|+.+.
T Consensus       104 ~~~pa~~a~i~~~~~~~~~~~a~  126 (393)
T PRK11195        104 AYSPAKYGILTELLPGEKLVKAN  126 (393)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHH
Confidence            99999999999999998775444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.82  E-value=1.3e-18  Score=175.08  Aligned_cols=97  Identities=8%  Similarity=0.068  Sum_probs=84.2

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALV-LTNLVGFIFGVITAFTKSFWQFALCRFFVGLS  134 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~-~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~  134 (493)
                      +.+++|.   +..+.+++.+++.++..+.++++|+++||+|||+.++ .+.++..++.++.++++|++.+++.|+++|.+
T Consensus        24 l~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  100 (375)
T TIGR00899        24 LSEEVRA---RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSF  100 (375)
T ss_pred             HHcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhh
Confidence            5677777   6788999999999999999999999999999988765 45666677788899999999999999999988


Q ss_pred             ccchhhhhhhhccccccccCc
Q psy13410        135 FDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       135 ~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      .+...+....++.|+.|+++|
T Consensus       101 ~~~~~p~~~~~~~~~~~~~~~  121 (375)
T TIGR00899       101 ASTANPQLFALAREHADRTGR  121 (375)
T ss_pred             hhhhHHHHHHHHHHHhhhcch
Confidence            888888888889998887766

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.82  E-value=4.2e-19  Score=184.31  Aligned_cols=98  Identities=11%  Similarity=0.201  Sum_probs=88.0

Q ss_pred             cccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHhhccc
Q psy13410         59 QLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT--KSFWQFALCRFFVGLSFD  136 (493)
Q Consensus        59 ~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a--~s~~~l~~~R~l~Gi~~g  136 (493)
                      |+++   +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++.++  .+++.+++.|+++|++.|
T Consensus        70 ~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~  146 (465)
T TIGR00894        70 NFKW---SGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQG  146 (465)
T ss_pred             CCCC---CHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcc
Confidence            4555   67789999999999999999999999999999999999999999999887554  678899999999999999


Q ss_pred             chhhhhhhhccccccccCccccc
Q psy13410        137 NCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       137 ~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      ...+....++.|++|+++|+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~r~~~~  169 (465)
T TIGR00894       147 SVSPATHKIIVKWAPPKERSRLL  169 (465)
T ss_pred             cchhhHHHHHHhcCCHHHHHHHH
Confidence            99999999999999998774433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.82  E-value=3.4e-19  Score=177.34  Aligned_cols=292  Identities=20%  Similarity=0.290  Sum_probs=183.9

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+++|.   +..+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.++..++++++.+++.|++.|++.
T Consensus        23 ~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   99 (352)
T PF07690_consen   23 LAEELGL---SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGS   99 (352)
T ss_dssp             HHCCSTT---TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccc
Confidence            6777776   7778999999999999999999999999999999999999999999777777788889999999999999


Q ss_pred             cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHhhhh----
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFA----FAEAFV-----YFSQIFITVIPEHY----  202 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~----~~~~~~-----w~~~~~~~~i~~~~----  202 (493)
                      +...+....++.|++|+++|+.            ..+.......++.    .+.+..     ||..+.+.++..++    
T Consensus       100 ~~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  100 GFFSPASNALIADWFPPEERGR------------AFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHCCCTCCHHH------------HHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhh------------ccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            9999999999999999986633            3333333333333    333222     77766655443332    


Q ss_pred             -heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCcccccccccccccc-ccchhhhhhhc
Q psy13410        203 -WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNM-DFVNRGFGENL  280 (493)
Q Consensus       203 -~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~  280 (493)
                       ..++++.|+.....+ +++++                                      ++.+++.. .++.  +.+. 
T Consensus       168 ~~~~~~~~~~~~~~~~-~~~~~--------------------------------------~~~~~~~~~~~~~--~~~~-  205 (352)
T PF07690_consen  168 FILFLPEPPPPRERES-PKESE--------------------------------------SKKPKPLKPGFKS--LFKN-  205 (352)
T ss_dssp             HHCCC---STTTT--S-STTTT----------------------------------------HHHCCCH-CTH--HHHH-
T ss_pred             Hhhhhhhccccccccc-ccccc--------------------------------------ccccccccccccc--cccc-
Confidence             245555543000000 00000                                      00000000 1233  3221 


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeeccccccc
Q psy13410        281 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLG  360 (493)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~  360 (493)
                          +..+..+......    .+....  +..+.|.                                            
T Consensus       206 ----~~~~~~~~~~~~~----~~~~~~--~~~~~~~--------------------------------------------  231 (352)
T PF07690_consen  206 ----PVLWILLIAFFLF----FFVFSG--FSFFLPL--------------------------------------------  231 (352)
T ss_dssp             ----HCCHHHHHHHHHH----HHHHHH--HHHHHHH--------------------------------------------
T ss_pred             ----chhhhhhhhhhHH----HHHHHH--hhcccch--------------------------------------------
Confidence                1001111111111    111111  1111111                                            


Q ss_pred             CCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHH
Q psy13410        361 SGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTN  440 (493)
Q Consensus       361 ~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~  440 (493)
                                          |         +...++..  .....+....+..++.+++.++.|+++||+++|+......
T Consensus       232 --------------------~---------l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (352)
T PF07690_consen  232 --------------------Y---------LQEVLGFS--GPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAI  280 (352)
T ss_dssp             --------------------H---------CCHHHHCC--THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             --------------------h---------hhhccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence                                0         00011110  1236777888889999999999999999999988877777


Q ss_pred             HHHHHHHHHHHhhh---hHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410        441 LVGFIFGVVTAFTK---SFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG  489 (493)
Q Consensus       441 ~~~~i~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~  489 (493)
                      ....+..+...+..   +........++.|++.+...+...+++.|.+|++-
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  332 (352)
T PF07690_consen  281 LLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY  332 (352)
T ss_dssp             HHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            76666666655432   44666667788999988889999999999998754

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.82  E-value=1.6e-18  Score=176.55  Aligned_cols=133  Identities=20%  Similarity=0.168  Sum_probs=98.4

Q ss_pred             heeecccccccccchhh-----hcccccccccCccceeeeccccccccccc--chhhHHHHHHHHHHHhhhhhhhhhhcc
Q psy13410         22 RWTLDLELNWVCTQDTL-----STWLNWVCTQDTLSTWALTPQLNWVCTQD--TLSTWAQAFFFCGAIVGGLVFGWVADR   94 (493)
Q Consensus        22 ~~~~~~~l~~~~~~~~~-----~~~~~w~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~s~~~lg~~ig~~i~g~l~Dr   94 (493)
                      +.+++++.||++....+     ....++..-.+.++.  +.++++.+..+.  ...+++.+++.++..++++++|+++||
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr   80 (408)
T PRK09874          3 PCENDTPINWKRNLTVAWLGCFLTGAAFSLVMPFLPL--YVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR   80 (408)
T ss_pred             CCcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            35567777875532221     111222222233344  455666532221  235889999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccc
Q psy13410         95 FGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDF  157 (493)
Q Consensus        95 ~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~  157 (493)
                      +|||+++..+.++..++.++.+++++++.+++.|++.|++.+ ..+....++.|.+|+++|+.
T Consensus        81 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~  142 (408)
T PRK09874         81 KGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGW  142 (408)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhH
Confidence            999999999999999999999999999999999999999854 56777888999999887743

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.82  E-value=3.7e-19  Score=178.48  Aligned_cols=117  Identities=15%  Similarity=0.156  Sum_probs=97.3

Q ss_pred             hhcccccccccCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh
Q psy13410         38 LSTWLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF  117 (493)
Q Consensus        38 ~~~~~~w~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~  117 (493)
                      +.....|..-.+..+.. +.+++|+   +..+.+++.+++.++.+++++++|+++||+|||++++.+.++..++.++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~-~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~   86 (366)
T TIGR00886        11 FLSFSVWFAFSPLAVQM-IKDDLGL---STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL   86 (366)
T ss_pred             HHHHHHHHHhHHhhhHH-HHHHhCC---CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            33344444333333311 6788888   7778999999999999999999999999999999999999999999999999


Q ss_pred             cc-cHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410        118 TK-SFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       118 a~-s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      ++ +++.++++|+++|++.+ ..+....+++|++|+++|+.+.
T Consensus        87 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~  128 (366)
T TIGR00886        87 AVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTAL  128 (366)
T ss_pred             HhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHH
Confidence            99 99999999999999955 5667889999999998885443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.82  E-value=6.3e-19  Score=171.07  Aligned_cols=173  Identities=17%  Similarity=0.232  Sum_probs=134.1

Q ss_pred             ccccchhhhcccccccccCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHH
Q psy13410         31 WVCTQDTLSTWLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFI  110 (493)
Q Consensus        31 ~~~~~~~~~~~~~w~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i  110 (493)
                      |.++..+..++..|..-++.-..  +.+|+++   ++.|.++++++..+..++..++.|++.||+|.|++..++.++..+
T Consensus        17 ~~S~~af~v~F~VW~l~s~l~~~--i~~~~~L---S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~I   91 (417)
T COG2223          17 WLSTLAFDVGFMVWTLFSPLGVF--IKSDFGL---SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLI   91 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh--hccccCC---CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHH
Confidence            44556677888999876666566  7799999   888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcc---cHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHH
Q psy13410        111 FGVITAFTK---SFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF  187 (493)
Q Consensus       111 ~~~~~a~a~---s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~  187 (493)
                      -++..+++.   |++++++.+++.|++ |+.+++.+.+++++||+|+++.+..+...|..|....-......+.+.... 
T Consensus        92 P~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g~~-  169 (417)
T COG2223          92 PCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFL-  169 (417)
T ss_pred             HHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHhhH-
Confidence            999999985   555999999999997 789999999999999999998888776667666665554444443333311 


Q ss_pred             HHHHHHHHHHHhhh-----hheeccCCC
Q psy13410        188 VYFSQIFITVIPEH-----YWCRVPELS  210 (493)
Q Consensus       188 ~w~~~~~~~~i~~~-----~~~~~pesp  210 (493)
                      .|+....+..++.+     .++.+.+.|
T Consensus       170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p  197 (417)
T COG2223         170 AWRNVAGIYVVALAIAAVLAWLGMNDVP  197 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence            24444333333322     355555555

>PRK12382 putative transporter; Provisional

Probab=99.82  E-value=8.9e-19  Score=177.72  Aligned_cols=101  Identities=16%  Similarity=0.185  Sum_probs=87.5

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHH---Hh-----cccHHHHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVIT---AF-----TKSFWQFALC  127 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~---a~-----a~s~~~l~~~  127 (493)
                      +.+|+|.   +..+.+++.+++.++..++++++|+++||+|||++++.+.+.+.++.+..   +.     .++++.++++
T Consensus        42 l~~~lg~---s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  118 (392)
T PRK12382         42 VHHDLGF---GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVG  118 (392)
T ss_pred             HHHhcCC---cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence            4677777   78889999999999999999999999999999999999998887765433   22     3588999999


Q ss_pred             HHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410        128 RFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       128 R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      |+++|++.+...+...+++.|++|+|+|+.+.
T Consensus       119 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~  150 (392)
T PRK12382        119 RLILGFGESQLLTGALTWGLGLVGPKHSGKVM  150 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCccccchhh
Confidence            99999999999999999999999999885544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.82  E-value=1.4e-18  Score=176.63  Aligned_cols=101  Identities=16%  Similarity=0.130  Sum_probs=89.1

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc--------ccHHHHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT--------KSFWQFALC  127 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a--------~s~~~l~~~  127 (493)
                      +.++++.   +..+.+++.+++.++..+++++.|+++||+|||++++.+.++++++++.++++        .+++.+++.
T Consensus        42 i~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  118 (399)
T PRK05122         42 VHDQLGF---SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLG  118 (399)
T ss_pred             HHHhcCc---cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Confidence            5677776   67789999999999999999999999999999999999999998887766553        257789999


Q ss_pred             HHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410        128 RFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       128 R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      |+++|++.+...+....++.|++|+|+|+.+.
T Consensus       119 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~  150 (399)
T PRK05122        119 RLLLGIGESLAGTGSILWGIGRVGALHTGRVI  150 (399)
T ss_pred             HHHHHhhHHhhcchHHHHHHhhcChhhhccch
Confidence            99999999999999999999999999885544

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.81  E-value=5.6e-18  Score=172.73  Aligned_cols=97  Identities=16%  Similarity=0.230  Sum_probs=91.0

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++++.   +..+.++..+++.++..+++++.|+++||+|||++++.+.++..++.++.+++++++.+++.|+++|++.
T Consensus        39 ~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  115 (406)
T PRK15402         39 VVEDFNA---GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGL  115 (406)
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHh
Confidence            6778887   6678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCc
Q psy13410        136 DNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R  155 (493)
                      +...+....++.|.+|+++|
T Consensus       116 ~~~~~~~~~~i~~~~~~~~~  135 (406)
T PRK15402        116 CFIGAVGYAAIQESFEEADA  135 (406)
T ss_pred             hhHHHHHHHHHHHHhChhHH
Confidence            99889999999999998866

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.81  E-value=3.6e-18  Score=173.23  Aligned_cols=99  Identities=19%  Similarity=0.300  Sum_probs=92.2

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++++.   +..+.+++.+++.++..+++++.|+++||+|||+.++.+.++..++.++..++++++.+++.|+++|++.
T Consensus        29 ~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~  105 (392)
T PRK10473         29 IAADLNA---SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGA  105 (392)
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence            6777776   6778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDF  157 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~  157 (493)
                      +...+....++.|++|+++|+.
T Consensus       106 ~~~~~~~~~~i~~~~~~~~r~~  127 (392)
T PRK10473        106 GCCYVVAFAILRDTLDDRRRAK  127 (392)
T ss_pred             hHHHHHHHHHHHHHcCHHHHHH
Confidence            9999999999999999987743

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.80  E-value=5e-18  Score=171.11  Aligned_cols=99  Identities=20%  Similarity=0.313  Sum_probs=92.3

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+++|+   +..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.++.+++++++.+++.|++.|++.
T Consensus        17 ~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~   93 (377)
T PRK11102         17 IAADFGV---SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAA   93 (377)
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            5677777   6778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDF  157 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~  157 (493)
                      +...+....++.|++|+++|+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~  115 (377)
T PRK11102         94 AAASVVINALMRDMFPKEEFSR  115 (377)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHH
Confidence            9999999999999999987743

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.80  E-value=3.7e-18  Score=176.53  Aligned_cols=98  Identities=12%  Similarity=0.005  Sum_probs=87.9

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK----SFWQFALCRFFV  131 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~----s~~~l~~~R~l~  131 (493)
                      +.++ ++   +..+.+++.+++.++.+++++++|+++||+|||++++.+.++.+++.++.++++    +++.+++.|++.
T Consensus        55 l~~~-g~---s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~  130 (452)
T PRK11273         55 LVEQ-GF---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC  130 (452)
T ss_pred             HHHc-CC---CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence            5555 66   677899999999999999999999999999999999999999999999888764    788999999999


Q ss_pred             hhcccchhhhhhhhccccccccCccc
Q psy13410        132 GLSFDNCFTMMYILGMPIYKTRNLDF  157 (493)
Q Consensus       132 Gi~~g~~~~~~~~~i~e~~~~~~R~~  157 (493)
                      |++.|...+.....+.|++|+++|+.
T Consensus       131 gi~~g~~~~~~~~~~~~~~~~~~r~~  156 (452)
T PRK11273        131 GWFQGMGWPPCGRTMVHWWSQKERGG  156 (452)
T ss_pred             HHHHhccchHHHHHHHHhCChHHHHH
Confidence            99999998888888999999987743

>PRK11043 putative transporter; Provisional

Probab=99.80  E-value=1e-17  Score=170.45  Aligned_cols=97  Identities=19%  Similarity=0.273  Sum_probs=90.5

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++++.   +..+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++.+++++++.+++.|+++|++.
T Consensus        32 i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  108 (401)
T PRK11043         32 IQADLQT---SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGV  108 (401)
T ss_pred             HHHHHCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Confidence            6788887   6778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCc
Q psy13410        136 DNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R  155 (493)
                      +...+....++.|++++++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~  128 (401)
T PRK11043        109 CSAAVIWQALVIDRYPAQKA  128 (401)
T ss_pred             HHHHHHHHHHHHHhcCcHHH
Confidence            88888888999999998755

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.79  E-value=2.3e-18  Score=177.30  Aligned_cols=97  Identities=10%  Similarity=-0.028  Sum_probs=86.6

Q ss_pred             ccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHhhcc
Q psy13410         60 LNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT----KSFWQFALCRFFVGLSF  135 (493)
Q Consensus        60 ~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a----~s~~~l~~~R~l~Gi~~  135 (493)
                      .|+   +..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++.+++    .+++.+.+.|++.|++.
T Consensus        56 ~g~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~  132 (438)
T TIGR00712        56 QGF---SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQ  132 (438)
T ss_pred             cCC---CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHh
Confidence            466   67789999999999999999999999999999999999999999999888765    46788899999999999


Q ss_pred             cchhhhhhhhccccccccCccccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      |..++....++.|++|+++|+.+.
T Consensus       133 g~~~~~~~~~i~~~~~~~~rg~~~  156 (438)
T TIGR00712       133 GMGWPPCGRTMVHWWSQSERGTIV  156 (438)
T ss_pred             hcchHHHHHHHHHhcCcccchhHH
Confidence            999999999999999998774443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.79  E-value=1.8e-17  Score=169.29  Aligned_cols=102  Identities=23%  Similarity=0.309  Sum_probs=92.6

Q ss_pred             CccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q psy13410         49 DTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCR  128 (493)
Q Consensus        49 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R  128 (493)
                      +.+++  +.++++.   +..+.++..++++++++++++++|+++||+|||++++.+.+++.++++++++++|++.++++|
T Consensus        37 p~l~~--i~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r  111 (413)
T PRK15403         37 PGIIN--VVRDFNA---DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIAR  111 (413)
T ss_pred             cCHHH--HHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            44444  7778887   777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccchhhhhhhhccccccccCc
Q psy13410        129 FFVGLSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       129 ~l~Gi~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      +++|++.+...+...+++.|++|+++|
T Consensus       112 ~l~Gi~~~~~~~~~~~~~~~~~~~~~~  138 (413)
T PRK15403        112 FIQGTSICFIATVGYVTVQEAFGQTKG  138 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            999999987777888899999998766

>TIGR00896 CynX cyanate transporter

Probab=99.79  E-value=2.2e-17  Score=165.17  Aligned_cols=95  Identities=13%  Similarity=0.045  Sum_probs=86.7

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+++|.   +..+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.+.. .+++++.+++.|++.|++.
T Consensus        26 l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~  101 (355)
T TIGR00896        26 IRSALGM---SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGI  101 (355)
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Confidence            7888887   77889999999999999999999999999999999999999988888877 7899999999999999999


Q ss_pred             cchhhhhhhhccccccccCc
Q psy13410        136 DNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R  155 (493)
                      +...+....++.|+++ ++|
T Consensus       102 ~~~~~~~~~~~~~~~~-~~~  120 (355)
T TIGR00896       102 AIINVLLPSLIKRDFP-QRV  120 (355)
T ss_pred             HHHhccchHHHHHhCc-chh
Confidence            9988888888889886 455

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.78  E-value=1.9e-17  Score=167.42  Aligned_cols=97  Identities=21%  Similarity=0.246  Sum_probs=90.0

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+++|.   +..+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.++.++++|++.+++.|+++|++.
T Consensus        32 ~~~~~~~---s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  108 (381)
T PRK03633         32 WLAQEHL---PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGC  108 (381)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            6677777   6788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCc
Q psy13410        136 DNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R  155 (493)
                      |...+.....+.+..++++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~  128 (381)
T PRK03633        109 AMIWVVVESALMCSGTSRNR  128 (381)
T ss_pred             HHHHHHHHHHHHHhCCHHHH
Confidence            99998888888888888765

>PRK10504 putative transporter; Provisional

Probab=99.77  E-value=4.2e-17  Score=169.59  Aligned_cols=97  Identities=14%  Similarity=0.120  Sum_probs=90.4

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.+++|.   +..+.+++.+.+.++.+++.+++|+++||+|||++++.+.++++++.++++++++++.+++.|+++|++.
T Consensus        36 ~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~  112 (471)
T PRK10504         36 MAQSLGE---SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGG  112 (471)
T ss_pred             HHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Confidence            6677777   6677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCc
Q psy13410        136 DNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R  155 (493)
                      |...+...+++.|++|+++|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~  132 (471)
T PRK10504        113 AMMVPVGRLTVMKIVPREQY  132 (471)
T ss_pred             HHHHHHHHHHHHHHcCHHHH
Confidence            99999999999999998766

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.76  E-value=3e-17  Score=167.97  Aligned_cols=288  Identities=13%  Similarity=0.041  Sum_probs=179.1

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF-----TKSFWQFALCRFF  130 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~-----a~s~~~l~~~R~l  130 (493)
                      +..+++.   +..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+.     +++++.+++.|++
T Consensus        43 ~~~~~~~---s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  119 (417)
T PRK10489         43 QIQMMTG---STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLW  119 (417)
T ss_pred             HHHHHHC---CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            3445544   6678999999999999999999999999999999999988888877665542     5789999999999


Q ss_pred             HhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhh----
Q psy13410        131 VGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEA-----FVYFSQIFITVIPEH----  201 (493)
Q Consensus       131 ~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~-----~~w~~~~~~~~i~~~----  201 (493)
                      +|++.+...+...+++.|+.|+++|+.+....        ......+..++..+.+     ..|++.+.+..+..+    
T Consensus       120 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~  191 (417)
T PRK10489        120 DGFFGSLGVTALLAATPALVGRENLMQAGAIT--------MLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLL  191 (417)
T ss_pred             HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHH--------HHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            99999888888899999999998774333221        1111112222222221     226666555443322    


Q ss_pred             hheeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcC
Q psy13410        202 YWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLG  281 (493)
Q Consensus       202 ~~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  281 (493)
                      ..+.+||+++  .  ++.+.++.++                                        ....++.  .++   
T Consensus       192 ~~~~l~~~~~--~--~~~~~~~~~~----------------------------------------~~~~~~~--~~~---  222 (417)
T PRK10489        192 PLLRLPALPP--P--PQPREHPLRS----------------------------------------LLAGFRF--LLA---  222 (417)
T ss_pred             HHHhCCCCCC--C--CcccccchHH----------------------------------------HHHHHHH--HHc---
Confidence            2345666543  0  0000000000                                        0000111  221   


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccC
Q psy13410        282 EFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGS  361 (493)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~  361 (493)
                        .+..+..+. ....   ... ...  +..+.|.                                             
T Consensus       223 --~~~~~~~~~-~~~~---~~~-~~~--~~~~~p~---------------------------------------------  248 (417)
T PRK10489        223 --SPVVGGIAL-LGGL---LTM-ASA--VRVLYPA---------------------------------------------  248 (417)
T ss_pred             --ChHHHHHHH-HHHH---HHH-HHh--HHHhhHH---------------------------------------------
Confidence              121111111 1111   111 111  1112222                                             


Q ss_pred             CCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHH
Q psy13410        362 GITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNL  441 (493)
Q Consensus       362 ~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~  441 (493)
                                         |         ....++.   +....+++.+...++.+++.++.+++.||.++++.+..+.+
T Consensus       249 -------------------~---------~~~~~g~---~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~  297 (417)
T PRK10489        249 -------------------L---------ADEVWQM---GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTL  297 (417)
T ss_pred             -------------------H---------HHhccCC---ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHH
Confidence                               0         0000111   12357888888999999999999999999888878887777


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCC
Q psy13410        442 VGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFP  488 (493)
Q Consensus       442 ~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~  488 (493)
                      +.+++.+++.+.++.....++.++.|++.+...+...+++.|.+|++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  344 (417)
T PRK10489        298 GSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDE  344 (417)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence            77777777777777777777788888887777777788999999964

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.76  E-value=8e-17  Score=159.77  Aligned_cols=268  Identities=20%  Similarity=0.294  Sum_probs=187.8

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++++.   +..+.+++.+++.++..++++++|+++||+|||+.+..+.++..++.++..++++++.+++.|++.|++.
T Consensus        25 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  101 (352)
T cd06174          25 LAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGG  101 (352)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccc
Confidence            4445554   6778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhheeccCCC
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV-----YFSQIFITVIPEHYWCRVPELS  210 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~-----w~~~~~~~~i~~~~~~~~pesp  210 (493)
                      +...+....++.|++|+|+|+.....        .......+..++..+....     |+..+.+..+..+....+  . 
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-  170 (352)
T cd06174         102 GALYPAAAALIAEWFPPKERGRALGL--------FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL--L-  170 (352)
T ss_pred             ccccHhHHHHHHHhCCccchhhhhhH--------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--H-
Confidence            99999999999999999877433322        1111122222222222221     777666655443321100  0 


Q ss_pred             chhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchHHHHH
Q psy13410        211 HLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVL  290 (493)
Q Consensus       211 ~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  290 (493)
                         +...           +.                                             .           +. 
T Consensus       171 ---~~~~-----------~~---------------------------------------------~-----------~~-  179 (352)
T cd06174         171 ---LFLL-----------RL---------------------------------------------L-----------LL-  179 (352)
T ss_pred             ---HHHH-----------HH---------------------------------------------H-----------HH-
Confidence               0000           00                                             0           00 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCC
Q psy13410        291 FFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSW  370 (493)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~  370 (493)
                         .....+........  +..+.|.                                                      
T Consensus       180 ---~~~~~~~~~~~~~~--~~~~~~~------------------------------------------------------  200 (352)
T cd06174         180 ---LALAFFLLSFGYYG--LLTYLPL------------------------------------------------------  200 (352)
T ss_pred             ---HHHHHHHHHhHHHH--HHHHHHH------------------------------------------------------
Confidence               00011111111111  1111111                                                      


Q ss_pred             CeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCch-HHHHHHHHHHHHHHH
Q psy13410        371 PIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVP-ALVLTNLVGFIFGVV  449 (493)
Q Consensus       371 ~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~-~l~~~~~~~~i~~~~  449 (493)
                                         .....++   .+..+.++......++.+++.++.++++||+|||+ .+..+..+..++.+.
T Consensus       201 -------------------~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  258 (352)
T cd06174         201 -------------------YLQEVLG---LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL  258 (352)
T ss_pred             -------------------HHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence                               0000000   02346788889999999999999999999999999 999999999998888


Q ss_pred             HHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410        450 TAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG  489 (493)
Q Consensus       450 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~  489 (493)
                      ....++.....+..++.|++.+...+....++.|..|++-
T Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  298 (352)
T cd06174         259 LALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA  298 (352)
T ss_pred             HHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH
Confidence            8888888888889999999999999999999999999654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.76  E-value=1.2e-16  Score=162.34  Aligned_cols=97  Identities=19%  Similarity=0.228  Sum_probs=90.0

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++++.   +..+.+++.+++.++..++++++|+++||+|||++++.+.++..++.++..++++++.+++.|++.|++.
T Consensus        34 i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  110 (394)
T PRK11652         34 MARDLNV---REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGT  110 (394)
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Confidence            6677887   6778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCc
Q psy13410        136 DNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R  155 (493)
                      +...+....++.|.+++++|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~  130 (394)
T PRK11652        111 GVGGVMARTLPRDLYEGTQL  130 (394)
T ss_pred             hHHHHHHHHHHHHhcCHHHH
Confidence            98888888889999988765

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.75  E-value=3.6e-17  Score=188.23  Aligned_cols=291  Identities=15%  Similarity=0.133  Sum_probs=179.9

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHH---hcccHHHHHHHHHHHhhcccchhhhhh
Q psy13410         67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITA---FTKSFWQFALCRFFVGLSFDNCFTMMY  143 (493)
Q Consensus        67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a---~a~s~~~l~~~R~l~Gi~~g~~~~~~~  143 (493)
                      ....+++.+++.++.+++++++|+++||+|||++++++.++..++.++..   .+++++.++++|+++|++.|...++..
T Consensus        46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  125 (1146)
T PRK08633         46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY  125 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence            35578999999999999999999999999999999999877666665544   457899999999999999999999999


Q ss_pred             hhccccccccCccccccccccccccchhHHH-HHHHHHHHHHHHH----------HHHHHH-HHHH----Hhhhhheecc
Q psy13410        144 ILGMPIYKTRNLDFDDVLPHLGEFGRYQKVL-FFSMILFAFAEAF----------VYFSQI-FITV----IPEHYWCRVP  207 (493)
Q Consensus       144 ~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~-~~~~~l~~~~~~~----------~w~~~~-~~~~----i~~~~~~~~p  207 (493)
                      +++.|++|+++|+.+......     ...+. ..+..+++.+...          .|++.+ +...    +..++.+.+|
T Consensus       126 ~~i~~~~~~~~r~~~~~~~~~-----~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (1146)
T PRK08633        126 GIIPELVGKENLSRANGLLEA-----FTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLP  200 (1146)
T ss_pred             hhhHHhcCcccchhhhhHHHH-----HHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999999988655433111     11111 1122222322222          112222 1111    1112345678


Q ss_pred             CCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchHH
Q psy13410        208 ELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQ  287 (493)
Q Consensus       208 esp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  287 (493)
                      |+|.  ....+.+. +.....+.                                    ....++.  +++     .+..
T Consensus       201 ~~~~--~~~~~~~~-~~~~~~~~------------------------------------~~~~~~~--l~~-----~~~~  234 (1146)
T PRK08633        201 KVPA--AAPEVFDK-KKYLFPKL------------------------------------LWRNLKL--LRS-----DRVL  234 (1146)
T ss_pred             CCCC--CCcccccc-cccccHHH------------------------------------HHHHHHH--Hhc-----CcHH
Confidence            8764  11100000 00000000                                    0001111  222     1111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCC
Q psy13410        288 KVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKAD  367 (493)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~  367 (493)
                      +..++...+.++..    ..  +..+.|.                                                   
T Consensus       235 ~~~~~~~~~~~~~~----~~--~~~~~~~---------------------------------------------------  257 (1146)
T PRK08633        235 WLAIIGLSYFWFIS----QL--AQANFPA---------------------------------------------------  257 (1146)
T ss_pred             HHHHHHHHHHHHHH----HH--HHHhhHH---------------------------------------------------
Confidence            21111111111111    11  1111221                                                   


Q ss_pred             CCCCeeeccCceeeccCCCccchhhhhcccccccch-hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHH
Q psy13410        368 PSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDT-LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIF  446 (493)
Q Consensus       368 ~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~  446 (493)
                                            .....+++   +.. ..+++.+...++.++|.++.|+++||++++..+.++.++.+++
T Consensus       258 ----------------------~~~~~~g~---s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~  312 (1146)
T PRK08633        258 ----------------------YAKEVLGL---DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALS  312 (1146)
T ss_pred             ----------------------HHHHHhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHH
Confidence                                  00011111   122 5688888999999999999999999999999888888888888


Q ss_pred             HHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCCc
Q psy13410        447 GVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~  490 (493)
                      .+++.+..+....+++.+++|++.+...+...+++.+.+|.+-+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r  356 (1146)
T PRK08633        313 LFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKEL  356 (1146)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccch
Confidence            87777777877778888899999888888899999999987543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.75  E-value=1.3e-16  Score=162.65  Aligned_cols=98  Identities=7%  Similarity=0.019  Sum_probs=90.2

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHh
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF---TKSFWQFALCRFFVG  132 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~---a~s~~~l~~~R~l~G  132 (493)
                      +++++++   +..+.+++.+.+++++.+++++.|++.||+|||++++.+.++++++.++...   .++++.+++.|++.|
T Consensus        29 ~~~~~~~---s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G  105 (410)
T TIGR00885        29 FQQAFTL---TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILT  105 (410)
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            7888887   7788999999999999999999999999999999999999999999988654   468999999999999


Q ss_pred             hcccchhhhhhhhccccccccCcc
Q psy13410        133 LSFDNCFTMMYILGMPIYKTRNLD  156 (493)
Q Consensus       133 i~~g~~~~~~~~~i~e~~~~~~R~  156 (493)
                      +|.|...+....++.+..|+++|+
T Consensus       106 ~g~g~~~~~~~~~~~~~~~~~~~~  129 (410)
T TIGR00885       106 AGLGFLETAANPYILVMGPESTAT  129 (410)
T ss_pred             hhHHHHHhhhhHHHHHHCCHhHHH
Confidence            999999999999999999888763

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00897 2A0118 polyol permease family

Probab=99.75  E-value=4.1e-16  Score=158.79  Aligned_cols=101  Identities=15%  Similarity=0.084  Sum_probs=87.5

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHH---h-cccHHHHHHHHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITA---F-TKSFWQFALCRFFV  131 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a---~-a~s~~~l~~~R~l~  131 (493)
                      +.+|++.   +..+.+++.+.+.++..++++++|+++||+|||+++..+.++++++.++..   + .++++.+++.|+++
T Consensus        39 ~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~  115 (402)
T TIGR00897        39 FLKALGL---SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIR  115 (402)
T ss_pred             HHHHhCC---CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence            4466776   678899999999999999999999999999999999999999999877653   3 36899999999999


Q ss_pred             hhcccchhhhhhhhccccccccCccccc
Q psy13410        132 GLSFDNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       132 Gi~~g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      |++.+...+....++.+++|+++|+.+.
T Consensus       116 G~g~~~~~~~~~~~~~~~~~~~~~g~~~  143 (402)
T TIGR00897       116 GLGYPLFAYSFLVWVVYNTKQDNLSSAV  143 (402)
T ss_pred             HcchHHHHhHHHHHHHHhCCHHHHHHHH
Confidence            9999888888888899999998775444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.74  E-value=3e-16  Score=157.00  Aligned_cols=99  Identities=14%  Similarity=0.099  Sum_probs=79.3

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhccc-----CChhH-HHHHHHHHHHHHHHHHhc---ccHHHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF-----GRVPA-LVLTNLVGFIFGVITAFT---KSFWQFAL  126 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-----GRr~~-l~~~~~~~~i~~~~~a~a---~s~~~l~~  126 (493)
                      +.+|+++   +..+.++..+. .+...+ .+++|+++||+     |||+. ++.+.++.++..++.++.   .+.+.+.+
T Consensus        14 ~~~~~g~---s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~   88 (356)
T TIGR00901        14 WLRSKNV---SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAG   88 (356)
T ss_pred             HHHHcCC---CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence            6677887   66778888655 444444 99999999998     89997 467778888887777887   46667888


Q ss_pred             HHHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410        127 CRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       127 ~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      ..++.|++.+...+...+++.|++|+|+|+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~  121 (356)
T TIGR00901        89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGS  121 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHH
Confidence            888899998889999999999999999886554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.74  E-value=1.7e-16  Score=164.05  Aligned_cols=138  Identities=15%  Similarity=0.202  Sum_probs=102.0

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHhhc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFAL-CRFFVGLS  134 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~-~R~l~Gi~  134 (493)
                      +.++++.   +..+.+++.+.+.++..++.+++|+++||+|||++++.+.+++.++.++++++++++.+++ .|+++|++
T Consensus        45 i~~~~g~---s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~  121 (455)
T TIGR00892        45 LQQIFQA---TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLG  121 (455)
T ss_pred             HHHHhCc---chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            6778887   6777999999999999999999999999999999999999999999999999999999875 57999999


Q ss_pred             ccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13410        135 FDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPE  200 (493)
Q Consensus       135 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~w~~~~~~~~i~~  200 (493)
                      .|...+....++.++++ ++|+.+..+..   .+...+........+.......||+.|.+.++..
T Consensus       122 ~~~~~~~~~~~~~~~~~-~~r~~a~g~~~---~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~  183 (455)
T TIGR00892       122 LAFNFQPSLTMLGKYFY-RRRPLANGLAM---AGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLL  183 (455)
T ss_pred             chhhhhHHHHHHHHHHH-hhHHHHHHHHH---hcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            99877777888899986 56655443311   1112121111111122222233888887655443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.72  E-value=7e-16  Score=156.88  Aligned_cols=101  Identities=20%  Similarity=0.123  Sum_probs=91.6

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      ++++.+.   +..+.+++.+++.++..+.+++.|+++||+|||+++..+.++..++.++++++++++.+++.|+++|++.
T Consensus        37 ~~~~~g~---s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~  113 (400)
T PRK11646         37 FVDQLGW---AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGG  113 (400)
T ss_pred             HHHHhCC---cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            4566666   6788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      +...+...+++.|++|+++|+.+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~a~  137 (400)
T PRK11646        114 TLFDPPRTALVIKLIRPHQRGRFF  137 (400)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHH
Confidence            888899999999999998774433

>KOG2532|consensus

Probab=99.72  E-value=3e-16  Score=160.31  Aligned_cols=140  Identities=17%  Similarity=0.286  Sum_probs=110.0

Q ss_pred             cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhhc
Q psy13410         57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK--SFWQFALCRFFVGLS  134 (493)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~--s~~~l~~~R~l~Gi~  134 (493)
                      ..+++.   ++.+.+++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++...+.  +++.+++.|++||++
T Consensus        65 ~~~~~w---s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~  141 (466)
T KOG2532|consen   65 AGEYDW---SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG  141 (466)
T ss_pred             CceecC---CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence            456666   788899999999999999999999999999999999999999999999999874  556889999999999


Q ss_pred             ccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHH----HH------HHHHHHHHHHHHhhhh--
Q psy13410        135 FDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFA----EA------FVYFSQIFITVIPEHY--  202 (493)
Q Consensus       135 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~----~~------~~w~~~~~~~~i~~~~--  202 (493)
                      .|..+++...+.+.|.|+++|            +.+.++...+..++..+    .+      ..|+..|.+.++..++  
T Consensus       142 ~g~~~pa~~~i~~~W~P~~Er------------s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~  209 (466)
T KOG2532|consen  142 QGVLFPAIGSILAKWAPPNER------------STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWF  209 (466)
T ss_pred             HhHHHhhhhceeeeECCHHHH------------HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHH
Confidence            999999999999999999866            33444343333333222    22      2388888765544433  


Q ss_pred             ---heeccCCCc
Q psy13410        203 ---WCRVPELSH  211 (493)
Q Consensus       203 ---~~~~pesp~  211 (493)
                         +.+..|+|.
T Consensus       210 ~~w~~~~~d~P~  221 (466)
T KOG2532|consen  210 ILWFLFYSDSPS  221 (466)
T ss_pred             HHHHHHhcCCcc
Confidence               345567775

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.72  E-value=8e-16  Score=156.18  Aligned_cols=96  Identities=16%  Similarity=0.234  Sum_probs=71.2

Q ss_pred             ecccccccccccchhhHHHHHH-HHHHHhhhhhhhhhhcccCChhHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhh
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFF-FCGAIVGGLVFGWVADRFGRVPAL-VLTNLVGFIFGVITAFTKSFWQFALCRFFVGL  133 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~-~lg~~ig~~i~g~l~Dr~GRr~~l-~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi  133 (493)
                      +.++++.   +..+.+++.+.. .++..++.++.++ +||+|||+.+ +.+.++.+++.++.+++++++.+++.+.+.|.
T Consensus        42 l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  117 (393)
T PRK15011         42 LTDEVHA---RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSS  117 (393)
T ss_pred             HHhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5677777   667789987765 5566666666666 9999999875 56667767888888899999998766655554


Q ss_pred             cccchhhhhhhhccccccccCc
Q psy13410        134 SFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       134 ~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      ..+...+....++.|+.+++.|
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~  139 (393)
T PRK15011        118 FGSTANPQMFALAREHADKTGR  139 (393)
T ss_pred             HHHhhHHHHHHHHHHHhhhccc
Confidence            4557778888888887776644

>KOG2533|consensus

Probab=99.71  E-value=4.7e-16  Score=159.26  Aligned_cols=145  Identities=19%  Similarity=0.227  Sum_probs=117.7

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++.+.   ..++.+++.+++++++++|.+++|.|.||++-.+.+..+.+++++.+++++..+|++.+++.|++.|+.+
T Consensus        72 ~~edl~~---~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e  148 (495)
T KOG2533|consen   72 LKEDLKL---VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE  148 (495)
T ss_pred             Cccccch---hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            3455555   6678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhh---
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV-----------YFSQIFITVIPEH---  201 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~-----------w~~~~~~~~i~~~---  201 (493)
                      ++.+|....+++-||.+++|+.        ..|.+.+....++++++.+...+           ||+.|++.++..+   
T Consensus       149 s~~wP~~~~~lg~wy~~~e~g~--------r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~g  220 (495)
T KOG2533|consen  149 SGGWPGVVAILGNWYGKSERGL--------RMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLG  220 (495)
T ss_pred             cccchHHHHHHHhhcChhhhhh--------hHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHH
Confidence            9999999999999999986622        12223333335556666555552           9999988654443   


Q ss_pred             --hheeccCCCc
Q psy13410        202 --YWCRVPELSH  211 (493)
Q Consensus       202 --~~~~~pesp~  211 (493)
                        .++++|+.|.
T Consensus       221 i~~f~~lp~~P~  232 (495)
T KOG2533|consen  221 IVVFFFLPDNPS  232 (495)
T ss_pred             heEEEEecCChh
Confidence              2678999985

>KOG1330|consensus

Probab=99.71  E-value=3.2e-18  Score=167.43  Aligned_cols=99  Identities=21%  Similarity=0.357  Sum_probs=93.7

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +++.+|+   +....+++++++.+...+.+|++|+++|||.||+++.+|..+|.++.++++++..||+++++|.+.|+|.
T Consensus        59 v~~~fni---~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGe  135 (493)
T KOG1330|consen   59 VQTYFNI---SDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGE  135 (493)
T ss_pred             HHHhcCC---CchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            6777787   7778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDF  157 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~  157 (493)
                      +...++++++++|.+|..+|+.
T Consensus       136 As~~~ia~s~IaD~f~~~~Rs~  157 (493)
T KOG1330|consen  136 ASYSPIAPSLIADSFPDDKRSR  157 (493)
T ss_pred             hhhcccchhHhhhcCcchhhhH
Confidence            9999999999999999986643

>PRK10054 putative transporter; Provisional

Probab=99.70  E-value=4.7e-16  Score=157.92  Aligned_cols=98  Identities=14%  Similarity=0.077  Sum_probs=89.6

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +++++|.   +..+.+++.+++.++..+++++.|+++||+|||++++.+.++..++.++.+++++++.+++.|++.|.+.
T Consensus        34 l~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  110 (395)
T PRK10054         34 LSRQYSL---SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAY  110 (395)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            5667777   7788999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             cchhhhhhhhccccccccCcc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLD  156 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~  156 (493)
                      +...+....+..|..|+++|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~  131 (395)
T PRK10054        111 SVFSTVLKAWFADNLSSTSKT  131 (395)
T ss_pred             HHHHHHHHHHHHHhcCHhHHH
Confidence            888888899999999988763

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.69  E-value=1.1e-15  Score=159.39  Aligned_cols=173  Identities=12%  Similarity=0.036  Sum_probs=105.4

Q ss_pred             ccccccccchhhhccccccc-------ccCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhccc----
Q psy13410         27 LELNWVCTQDTLSTWLNWVC-------TQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF----   95 (493)
Q Consensus        27 ~~l~~~~~~~~~~~~~~w~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~----   95 (493)
                      .|+||.++++...-+..+..       .....+.  ..++.|.   +..+.+.. +...+.+ ++.+++|+++||+    
T Consensus         4 ~~l~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~--~l~~~g~---~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~   76 (491)
T PRK11010          4 QYLRIFQQPNSAILLILGFASGLPLALTSGTLQA--WMTVENI---DLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPF   76 (491)
T ss_pred             hHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCC---CHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccC
Confidence            47899887776543322221       1122222  2233333   44455554 2222222 6899999999999    


Q ss_pred             -CChhH-HHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccch
Q psy13410         96 -GRVPA-LVLTNLVGFIFGVITAFT---KSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRY  170 (493)
Q Consensus        96 -GRr~~-l~~~~~~~~i~~~~~a~a---~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~  170 (493)
                       |||+. ++.+.++.+++.++.++.   .+++.+.+.|++.|++.+...+...+++.|++|+++|+......   ..|..
T Consensus        77 ~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~---~~g~~  153 (491)
T PRK11010         77 LGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAIS---VLGYR  153 (491)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHH---HHHHH
Confidence             99986 667777777777777775   47889999999999999999999999999999998774433221   11111


Q ss_pred             hHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhh----heeccCCC
Q psy13410        171 QKVLFFSMILFAFAEA--FVYFSQIFITVIPEHY----WCRVPELS  210 (493)
Q Consensus       171 ~~~~~~~~~l~~~~~~--~~w~~~~~~~~i~~~~----~~~~pesp  210 (493)
                      .+... ++.++..+..  ..||..|.+.++..++    .+.+||++
T Consensus       154 lG~ll-g~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        154 LAMLV-SGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             HHHHH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            11111 1222222223  2499888765543322    33467765

>TIGR00898 2A0119 cation transport protein

Probab=99.69  E-value=3.7e-16  Score=164.01  Aligned_cols=208  Identities=29%  Similarity=0.525  Sum_probs=173.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCC-CCceeeeeecc-ccc
Q psy13410        281 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAA-FDSCRMYAVNY-THL  358 (493)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~c~~~~~~~-~~l  358 (493)
                      +++++||++.++++++..+..++.....++....|. |+|+.++..+++.+++.+.+.|.+.+. .+.|.++..+. ...
T Consensus         1 g~~g~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (505)
T TIGR00898         1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPE-HHCRLPDAANLSSRCELNLTLPRLPDGRPESCLRFMVDQWANP   79 (505)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-cccCCCCcccCChHhHhceeccCCCCCCCCCCccccccchhhh
Confidence            457999999999999999999999999999999997 999998766676667788888876554 78898886542 111


Q ss_pred             ccCCCCCCC----CCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCch
Q psy13410        359 LGSGITKAD----PSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVP  434 (493)
Q Consensus       359 ~~~~~~~~~----~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~  434 (493)
                      ...+.....    ......+|.++|.|+.. ...+.+..+++++|++..+.+++.+++.++.++|.++.|+++||+|||+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~  158 (505)
T TIGR00898        80 SLLGCEPLKLSDLGLAATEPCLDGWEYSYD-TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKK  158 (505)
T ss_pred             cccccccchhcccCCCCCCCCCCCcEecCC-cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchH
Confidence            111111000    12344689999999876 4567888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCCc
Q psy13410        435 ALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       435 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~  490 (493)
                      ++.++.++.+++.++..++++++.+++++++.|++.++..+...+++.|.+|++.|
T Consensus       159 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r  214 (505)
T TIGR00898       159 VLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQR  214 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhh
Confidence            99999999999999999999999999999999999999999999999999998654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.69  E-value=1.1e-15  Score=175.75  Aligned_cols=92  Identities=14%  Similarity=0.089  Sum_probs=76.1

Q ss_pred             chhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHH---HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh
Q psy13410         68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVL---TNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI  144 (493)
Q Consensus        68 ~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~---~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~  144 (493)
                      ...++..+++.+.++++++++|+++||+|||+++..   +.++..+..++...++|+++++++|+++|++.+...++..+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            457888999999999999999999999999997543   33333333344444589999999999999999999999999


Q ss_pred             hccccccccCccccc
Q psy13410        145 LGMPIYKTRNLDFDD  159 (493)
Q Consensus       145 ~i~e~~~~~~R~~~~  159 (493)
                      ++.+++++++|+.+.
T Consensus       132 ~l~~~~~~~~~~~a~  146 (1140)
T PRK06814        132 ILPDHLNKDELLGAN  146 (1140)
T ss_pred             hhHhhcCccccchhh
Confidence            999999999875544

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.69  E-value=1.8e-15  Score=151.17  Aligned_cols=138  Identities=13%  Similarity=0.063  Sum_probs=111.0

Q ss_pred             hhhhheeecccccccccchhhhcccccccc-cCcc--ceeeecccccccccccch-hhHHHHHHHHHHHhhhhhhhhhhc
Q psy13410         18 QLLTRWTLDLELNWVCTQDTLSTWLNWVCT-QDTL--STWALTPQLNWVCTQDTL-STWAQAFFFCGAIVGGLVFGWVAD   93 (493)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~-~~~~--~~~~i~~~~~~~~~~~~~-~~~~~s~~~lg~~ig~~i~g~l~D   93 (493)
                      +.+...+.+..++.......+.|..|..-+ +++.  ....+.+|+|+   +..+ .+.+.++++.+++++.++.|+++|
T Consensus        11 ~~~~~~~~~~~~~~W~~~~~~lC~fGF~~e~R~n~s~a~p~L~~elgl---T~~qv~G~I~s~F~ysYal~qIp~GlLaD   87 (511)
T TIGR00806        11 QACEEPRQDRELKSWRVLVLYLCFYGFMAQFRPGESFITPYLLTVLNF---TEETVTNEIIPVLPYSHLAVLVPVFLLTD   87 (511)
T ss_pred             hcccCCCccchhcchhHHHHHHHHHHHHHHhhchHHHHHHHHHHHcCC---CHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            344445554455522223344677766644 2222  23337788988   6677 999999999999999999999999


Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410         94 RFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus        94 r~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      |+|.|+++.++.+.+++.+++.++++++..+.+.|++.|++.|+.. +...++..|+|+++|+.+.
T Consensus        88 rlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~rat  152 (511)
T TIGR00806        88 YLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAA  152 (511)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999 9999999999998774444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.68  E-value=1.7e-16  Score=169.48  Aligned_cols=107  Identities=9%  Similarity=0.122  Sum_probs=95.4

Q ss_pred             cCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc--------
Q psy13410         48 QDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK--------  119 (493)
Q Consensus        48 ~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~--------  119 (493)
                      ....++  +.++|++   ++.+.+++.+.+.++++++.++.++++||+|||+.+.++++++++++++.++.+        
T Consensus        53 ~~~l~~--iek~F~l---ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~  127 (633)
T TIGR00805        53 NSSLTT--IERRFKL---STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSY  127 (633)
T ss_pred             Hhhchh--hhhhhCC---CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence            344455  8899998   788899999999999999999999999999999999999999999999998763        


Q ss_pred             -------------------------------------------cHHHHHHHHHHHhhcccchhhhhhhhccccccccCcc
Q psy13410        120 -------------------------------------------SFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLD  156 (493)
Q Consensus       120 -------------------------------------------s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~  156 (493)
                                                                 .+..++++|+++|+|.+..+++..+++.|++|+++|+
T Consensus       128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~  207 (633)
T TIGR00805       128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP  207 (633)
T ss_pred             cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence                                                       2567889999999999999999999999999999885


Q ss_pred             ccc
Q psy13410        157 FDD  159 (493)
Q Consensus       157 ~~~  159 (493)
                      ...
T Consensus       208 ~~~  210 (633)
T TIGR00805       208 LYI  210 (633)
T ss_pred             HHH
Confidence            543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PTZ00207 hypothetical protein; Provisional

Probab=99.68  E-value=1.9e-15  Score=157.62  Aligned_cols=95  Identities=14%  Similarity=0.058  Sum_probs=83.7

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT------KSFWQFALCRF  129 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a------~s~~~l~~~R~  129 (493)
                      +.+++++   +..+.+++.++. ...++++++.|+++||+|||++++++.++++++.++++++      ++++.+++.|+
T Consensus        53 L~~~lgl---s~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~  128 (591)
T PTZ00207         53 MQARYNL---TQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNG  128 (591)
T ss_pred             HHHHhCc---CHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence            7888888   667788887763 4456678889999999999999999999999999999997      68999999999


Q ss_pred             HHhhcccchhhhhhhhccccccccCc
Q psy13410        130 FVGLSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       130 l~Gi~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      ++|+|.+...+.....+.+++| ++|
T Consensus       129 l~G~G~~~~~~~~~~~i~~~Fp-~~R  153 (591)
T PTZ00207        129 LMTLGCMLFDLGAVVTVLSVFP-SNR  153 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCh-hhh
Confidence            9999999999999999999997 444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.67  E-value=1.1e-15  Score=155.35  Aligned_cols=87  Identities=7%  Similarity=0.015  Sum_probs=70.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN  483 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  483 (493)
                      ..++..++..+..+++.+..|++.||+|||+.+.++.++.++...+....++.+.+++..++.|++..........+..+
T Consensus       255 ~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  334 (396)
T TIGR00882       255 VFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITS  334 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777788888889999999999999999999998888888877776777777777777888888766555666778888


Q ss_pred             ccCCCCc
Q psy13410        484 RKPFPGC  490 (493)
Q Consensus       484 ~~p~~~~  490 (493)
                      ..|.|.+
T Consensus       335 ~~~~~~~  341 (396)
T TIGR00882       335 QFDVRLS  341 (396)
T ss_pred             hCCcceE
Confidence            8888764

>TIGR00889 2A0110 nucleoside transporter

Probab=99.66  E-value=4.8e-15  Score=151.57  Aligned_cols=88  Identities=11%  Similarity=0.152  Sum_probs=77.3

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCC-hhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGR-VPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLS  134 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GR-r~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~  134 (493)
                      +.++++.   +..+.+++.+++.++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+++.|++.|++
T Consensus        29 l~~~~g~---s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  105 (418)
T TIGR00889        29 MSKTLHF---SGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLA  105 (418)
T ss_pred             HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            5667777   77889999999999999999999999999965 8899999999989999999999999999999999998


Q ss_pred             ccchhhhhhhhc
Q psy13410        135 FDNCFTMMYILG  146 (493)
Q Consensus       135 ~g~~~~~~~~~i  146 (493)
                      .+...++..+..
T Consensus       106 ~~~~~~~~~~l~  117 (418)
T TIGR00889       106 YMPTIALTNSIS  117 (418)
T ss_pred             HccHHHHHHHHH
Confidence            877777665543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.65  E-value=2.8e-14  Score=144.25  Aligned_cols=85  Identities=8%  Similarity=-0.033  Sum_probs=76.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhh
Q psy13410        403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILET  482 (493)
Q Consensus       403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  482 (493)
                      ...+++..+..++.+++.++.+++.||+|+|+.+.++.+..++..+...+.++.+.++...++-|+..+...+....|+.
T Consensus       240 ~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~  319 (382)
T TIGR00902       240 SATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIA  319 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36778888889999999999999999999999999999999999988888899988888899999999999999999999


Q ss_pred             cccCCC
Q psy13410        483 NRKPFP  488 (493)
Q Consensus       483 e~~p~~  488 (493)
                      +. |++
T Consensus       320 ~~-~~~  324 (382)
T TIGR00902       320 AQ-PGS  324 (382)
T ss_pred             hC-CHh
Confidence            87 754

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.65  E-value=2.7e-14  Score=144.41  Aligned_cols=83  Identities=10%  Similarity=0.036  Sum_probs=70.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN  483 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  483 (493)
                      ..++..++..++.+++.++.|++.||+|+|+.+..+.+..++..+...+.++.+..++..++.|++.+...+....+..+
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  320 (382)
T PRK11128        241 TIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAA  320 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777888899999999999999999999999988888888777778888888888888999888777888888877


Q ss_pred             ccC
Q psy13410        484 RKP  486 (493)
Q Consensus       484 ~~p  486 (493)
                      ..|
T Consensus       321 ~~~  323 (382)
T PRK11128        321 RPG  323 (382)
T ss_pred             CCH
Confidence            644

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.65  E-value=8.9e-15  Score=149.85  Aligned_cols=87  Identities=9%  Similarity=0.070  Sum_probs=74.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN  483 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  483 (493)
                      ..+++.++..++.+++.+++|+++||+|||+.+..+.++.++..++..+.++.+.+++..++.|++.+...+....++.|
T Consensus       263 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  342 (420)
T PRK09528        263 VFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITL  342 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888889999999999999999999999998888888888888888888877777888888877777777889999


Q ss_pred             ccCCCCc
Q psy13410        484 RKPFPGC  490 (493)
Q Consensus       484 ~~p~~~~  490 (493)
                      .+|+|.+
T Consensus       343 ~~~~~~~  349 (420)
T PRK09528        343 NFDVRLS  349 (420)
T ss_pred             HcCccce
Confidence            9998754

>KOG2615|consensus

Probab=99.65  E-value=1.5e-14  Score=138.11  Aligned_cols=115  Identities=15%  Similarity=0.217  Sum_probs=94.8

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL  145 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~  145 (493)
                      ...-.|.+.+.|.++..+.++.||.++||+|||+++++|++..++..++.+++.||..+++.|++.|+.- +...+..++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~k-gnl~v~rAi  144 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFK-GNLSVIRAI  144 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHHH
Confidence            4456889999999999999999999999999999999999999999999999999977888899999986 567789999


Q ss_pred             ccccccccCccccccccccccccchhHHHHHH-HHHHHHHHH
Q psy13410        146 GMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFS-MILFAFAEA  186 (493)
Q Consensus       146 i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~-~~l~~~~~~  186 (493)
                      ++|++++|.|+.+.     +..|...++..+. ..+|+++..
T Consensus       145 isdV~sek~r~l~m-----s~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGM-----SLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHhhcChhhcccee-----eeeehhhhcchhhcchhhhHHHh
Confidence            99999999997665     3344455543333 244444444

>KOG3764|consensus

Probab=99.64  E-value=6.9e-16  Score=148.06  Aligned_cols=113  Identities=17%  Similarity=0.097  Sum_probs=101.5

Q ss_pred             cccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh
Q psy13410         65 TQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI  144 (493)
Q Consensus        65 ~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~  144 (493)
                      ++++++|++.+...+...+..++.|++.||+|+|..+++++.++...+++.++..+|+++++.|.+||+|.+...+...+
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla  182 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA  182 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410        145 LGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV  188 (493)
Q Consensus       145 ~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~  188 (493)
                      ++++.||.+           .+||+.+|...++..+|..+++..
T Consensus       183 mlAd~f~~d-----------~er~~vmGialgfislG~lvgPpf  215 (464)
T KOG3764|consen  183 MLADVFPED-----------NERGSVMGIALGFISLGVLVGPPF  215 (464)
T ss_pred             HHHHHcccc-----------hhhhHHHHHHHHHHhccceecCCc
Confidence            999999998           566777777666665555554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.63  E-value=3.6e-14  Score=146.02  Aligned_cols=98  Identities=16%  Similarity=0.108  Sum_probs=80.0

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc----cCC-hhHHHHHHHHHHHHHHHHHhccc------HHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR----FGR-VPALVLTNLVGFIFGVITAFTKS------FWQF  124 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr----~GR-r~~l~~~~~~~~i~~~~~a~a~s------~~~l  124 (493)
                      +.+++++   +..+.+++.++..+..++..|+.|+++||    +|| |+.++.+.++++++.+++.+.++      ...+
T Consensus        26 ~~~~~g~---s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  102 (437)
T TIGR00792        26 YTDVLGL---SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYA  102 (437)
T ss_pred             HHHccCC---CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence            5566777   67789999999999999999999999997    687 45677888888888888877764      4567


Q ss_pred             HHHHHHHhhcccchhhhhhhhcccccc-ccCcc
Q psy13410        125 ALCRFFVGLSFDNCFTMMYILGMPIYK-TRNLD  156 (493)
Q Consensus       125 ~~~R~l~Gi~~g~~~~~~~~~i~e~~~-~~~R~  156 (493)
                      ++.+++.+++.+...+...++..|..+ +++|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~  135 (437)
T TIGR00792       103 YITYILLGLFYSFVNIPYWSLVPAITLDPRERE  135 (437)
T ss_pred             HHHHHHHHHHHHhhcccHhhCcccccCCHHHHH
Confidence            888899999888877777888889875 45563

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.61  E-value=4.4e-14  Score=146.83  Aligned_cols=97  Identities=14%  Similarity=0.008  Sum_probs=86.0

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHhh
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTKSFWQ-FALCRFFVGL  133 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~a~a~s~~~-l~~~R~l~Gi  133 (493)
                      +.+++|.   +..+.+++.+.+.+...+..++.|+++|| +|||++++.+.+++.+++++++++.+... ++++|+++|+
T Consensus        41 l~~~lg~---~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~i  117 (489)
T PRK10207         41 FVKQLGF---SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAV  117 (489)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHh
Confidence            4566776   66678899999998888889999999999 99999999999999999999999887554 5589999999


Q ss_pred             cccchhhhhhhhccccccccCc
Q psy13410        134 SFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       134 ~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      |.|...+...++++|.+|+++|
T Consensus       118 g~g~~~~~~~~li~~~~p~~~~  139 (489)
T PRK10207        118 GNGLFKANPASLLSKCYPPKDP  139 (489)
T ss_pred             ccccccCCHHHHHHHhcCCCch
Confidence            9999999999999999998754

>KOG2504|consensus

Probab=99.59  E-value=8e-14  Score=144.26  Aligned_cols=328  Identities=14%  Similarity=0.196  Sum_probs=194.5

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHhhc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFAL-CRFFVGLS  134 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~-~R~l~Gi~  134 (493)
                      +.++++.   +..+.+|+.++......+.+|+.+.+.||+|.|.+.+.+.++.+++.++++|+++++++++ .-++.|+|
T Consensus        72 ~~~~f~~---s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G  148 (509)
T KOG2504|consen   72 LMDYFGS---SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLG  148 (509)
T ss_pred             HHHHhCC---CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcc
Confidence            5666664   5566999999999999999999999999999999999999999999999999999988766 67789999


Q ss_pred             ccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----heeccCC
Q psy13410        135 FDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHY-----WCRVPEL  209 (493)
Q Consensus       135 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~w~~~~~~~~i~~~~-----~~~~pes  209 (493)
                      .|..+..+.+.+..++. |+|+.+..+   ..-|.-.+........-..+....||..+..-....+.     ...-|.+
T Consensus       149 ~~~~~~paiviv~~YF~-kkR~lA~Gi---a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~  224 (509)
T KOG2504|consen  149 LGLIYLPAVVILGTYFE-KKRALATGI---AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLS  224 (509)
T ss_pred             chhhhcchhhhhhhHhH-HHHHHHHhh---hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999996665 455455544   22222222222222222233333388776554333321     2233433


Q ss_pred             CchhhhhhccCHHHHHHHHHHHhcccCCC--CCCCCCCCCCccCCC-----C-Cccccccccc-ccccccc----chhhh
Q psy13410        210 SHLDYADKEESHEEADTIAESYIKRNHTG--DRGLHNSPRSSTHGS-----L-NRESLKSRSL-TRRNMDF----VNRGF  276 (493)
Q Consensus       210 p~~~~l~~~~~~~~a~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-----~-~~~~~~~~~~-~~~~~~~----~~~~~  276 (493)
                      ++    .++.  ++++  ++......+..  +......+++.....     . ..+..+++.. ......+    .+  +
T Consensus       225 ~~----~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--l  294 (509)
T KOG2504|consen  225 PP----KKPN--EEKD--LRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLS--L  294 (509)
T ss_pred             cC----CCch--hhhh--hccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHH--H
Confidence            32    1111  1111  11100000000  000000000000000     0 0000000000 0011111    12  2


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeeccc
Q psy13410        277 GENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYT  356 (493)
Q Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  356 (493)
                      ++         .+.++.+.+...+..+.++.+  ..++|.                                        
T Consensus       295 l~---------~~~fl~~~~~~~~~~~g~~~p--~~~l~~----------------------------------------  323 (509)
T KOG2504|consen  295 LK---------DPKFLLLALSNLFAYLGFNVP--FVYLPS----------------------------------------  323 (509)
T ss_pred             Hc---------CchHHHHHHHHHHHHHHHHHH--HHHHHH----------------------------------------
Confidence            22         233333334333444333332  212222                                        


Q ss_pred             ccccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcC--Cch
Q psy13410        357 HLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFG--RVP  434 (493)
Q Consensus       357 ~l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~G--rr~  434 (493)
                                              |          ....+   .+..+.+.+..+.++..++|.++.|+++|+..  ++.
T Consensus       324 ------------------------~----------~~~~g---~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~  366 (509)
T KOG2504|consen  324 ------------------------Y----------AKSLG---LSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV  366 (509)
T ss_pred             ------------------------H----------HhhcC---CChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence                                    0          00011   12447888999999999999999999999987  445


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCC
Q psy13410        435 ALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFP  488 (493)
Q Consensus       435 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~  488 (493)
                      ...++.++.+++.+...+.+++..++....++|++.+.........+.|+.+.+
T Consensus       367 ~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~  420 (509)
T KOG2504|consen  367 LFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE  420 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence            566777777888888888999999999999999999888888888888887653

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.58  E-value=3.4e-13  Score=137.30  Aligned_cols=97  Identities=12%  Similarity=0.055  Sum_probs=80.5

Q ss_pred             ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhccc-----CChh-HHHHHHHHHHHHHHHHHhc---ccHHHHHHHH
Q psy13410         58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF-----GRVP-ALVLTNLVGFIFGVITAFT---KSFWQFALCR  128 (493)
Q Consensus        58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-----GRr~-~l~~~~~~~~i~~~~~a~a---~s~~~l~~~R  128 (493)
                      +|-|.   +.++++++..+...  .+..+++|+++||+     |||+ .++++.++.+++.++.++.   .+++.+++..
T Consensus        27 ~~~g~---~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~  101 (402)
T PRK11902         27 TVEGL---DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLA  101 (402)
T ss_pred             HHcCC---CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            34465   77789988777765  69999999999999     8875 7888889988888888887   3578888888


Q ss_pred             HHHhhcccchhhhhhhhccccccccCccccc
Q psy13410        129 FFVGLSFDNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       129 ~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      ++.|+..+...++..+++.|+.|+|+|+...
T Consensus       102 ~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~  132 (402)
T PRK11902        102 VLVAFLSASQDIVFDAYSTDVLHPEERGAGA  132 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHH
Confidence            8889988999999999999999998885444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.56  E-value=3.9e-13  Score=139.56  Aligned_cols=92  Identities=12%  Similarity=0.013  Sum_probs=86.4

Q ss_pred             ccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccch
Q psy13410         60 LNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNC  138 (493)
Q Consensus        60 ~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~  138 (493)
                      +|.   +..+.+++.+.+.++..+++++.|+++|| +|||++++++.++.+++.++.+++++++.++++|++.|+|.|..
T Consensus        43 lg~---s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~  119 (475)
T TIGR00924        43 LGF---SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLF  119 (475)
T ss_pred             CCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccc
Confidence            565   67789999999999999999999999999 89999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccccccccC
Q psy13410        139 FTMMYILGMPIYKTRN  154 (493)
Q Consensus       139 ~~~~~~~i~e~~~~~~  154 (493)
                      .+...++++|++|+++
T Consensus       120 ~~~~~~~~a~~~~~~~  135 (475)
T TIGR00924       120 KANPSSMVGKLYERGD  135 (475)
T ss_pred             cCCHHHHHHHhcCCCC
Confidence            9999999999998764

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.54  E-value=3.4e-13  Score=140.04  Aligned_cols=95  Identities=13%  Similarity=0.165  Sum_probs=85.7

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +..+.+    .....+|+.+.+.++.+++.++.|.++|.+|||.+++.+.++..+|+++++.++|...++++-.+.|+|.
T Consensus        70 I~~diG----~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvga  145 (599)
T PF06609_consen   70 INADIG----GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGA  145 (599)
T ss_pred             HHHhcC----CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhh
Confidence            555554    4567889999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhhhhhhhccccccccCc
Q psy13410        136 DNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R  155 (493)
                      |.... ....++|..|.|.|
T Consensus       146 G~~~~-~~~~isEl~p~k~R  164 (599)
T PF06609_consen  146 GVQEL-AALAISELVPNKWR  164 (599)
T ss_pred             HHHHH-HHHHHHHhcccchh
Confidence            77664 56668999999888

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.52  E-value=7.4e-13  Score=138.36  Aligned_cols=97  Identities=15%  Similarity=0.046  Sum_probs=81.4

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHhh
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTK-SFWQFALCRFFVGL  133 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~a~a~-s~~~l~~~R~l~Gi  133 (493)
                      +.+++|.   +..+.+++.+.+........+++|+++|| +|||++++.+.++.+++.+++++++ +.+.++++|+++|+
T Consensus        48 l~~~lg~---s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gi  124 (500)
T PRK09584         48 LVKQLGM---SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAV  124 (500)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            5567776   55566777777776666667899999999 5999999999999999999999874 56778889999999


Q ss_pred             cccchhhhhhhhccccccccCc
Q psy13410        134 SFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       134 ~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      |.|...+...+++.|++|++++
T Consensus       125 g~g~~~~~~~~l~~~~f~~~~~  146 (500)
T PRK09584        125 GNGLFKANPSSLLSTCYEKDDP  146 (500)
T ss_pred             hhhcccCCHHHHHHHhcCCCch
Confidence            9999999999999999987643

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.50  E-value=9.4e-13  Score=134.78  Aligned_cols=97  Identities=9%  Similarity=0.091  Sum_probs=74.2

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhc----ccCChhHHHHH-HHHHHHHHHHHHhcccHHH-------
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVAD----RFGRVPALVLT-NLVGFIFGVITAFTKSFWQ-------  123 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~D----r~GRr~~l~~~-~~~~~i~~~~~a~a~s~~~-------  123 (493)
                      +.++.+.   +....+++..+..+...+.+|+.|.++|    |+|||+.++++ .+...++.++.+++++...       
T Consensus        30 yl~~lg~---~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~  106 (477)
T TIGR01301        30 YVQELGI---PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLD  106 (477)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccccc
Confidence            3445555   6678999999999999999999999999    59999998885 5566666677778776532       


Q ss_pred             ----------HHHHHHHHhhcccchhhhhhhhccccccccCc
Q psy13410        124 ----------FALCRFFVGLSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       124 ----------l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                                ++++-.+..++.....+...++++|..|+++|
T Consensus       107 ~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~  148 (477)
T TIGR01301       107 KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR  148 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH
Confidence                      22232334447778888899999999999865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.48  E-value=2.8e-12  Score=133.41  Aligned_cols=286  Identities=16%  Similarity=0.162  Sum_probs=175.4

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhhcccchhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT-----KSFWQFALCRFFVGLSFDNCFT  140 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a-----~s~~~l~~~R~l~Gi~~g~~~~  140 (493)
                      +....+++.++..+-..+.+++.|.++||+.||++++.+-++.++..++.++.     .+.+.+++.-|+.|++.+...|
T Consensus        43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P  122 (524)
T PF05977_consen   43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP  122 (524)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999887776655542     4789999999999999999999


Q ss_pred             hhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHH---hhh-hheeccCCCchhhh
Q psy13410        141 MMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF-VYFSQIFITVI---PEH-YWCRVPELSHLDYA  215 (493)
Q Consensus       141 ~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~-~w~~~~~~~~i---~~~-~~~~~pesp~~~~l  215 (493)
                      +-.+++.|..|+++-..+..+....    ....-..+..+++.+... .-...|++.++   ..+ .....+..+.    
T Consensus       123 A~~A~ip~lV~~~~L~~A~al~s~~----~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----  194 (524)
T PF05977_consen  123 AWQAIIPELVPKEDLPAANALNSIS----FNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----  194 (524)
T ss_pred             HHHHHHHHhccHhhHHHHHHHHHHH----HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----
Confidence            9999999999998653333221110    011111111222221111 11122222111   111 1111111110    


Q ss_pred             hhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchHHHHHHHHHH
Q psy13410        216 DKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMI  295 (493)
Q Consensus       216 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  295 (493)
                      . +..+  .++..+.+                                        ++  -++.... .+..+..+....
T Consensus       195 ~-~~~~--~e~~~~~l----------------------------------------~~--G~ryv~~-~~~l~~~l~~~~  228 (524)
T PF05977_consen  195 P-SSLP--RERFFSAL----------------------------------------RE--GLRYVRS-SPPLRSVLLRSF  228 (524)
T ss_pred             c-cccc--hhhhhhhH----------------------------------------HH--HHHHHhc-chHHHHHHHHHH
Confidence            0 0000  00111111                                        11  1111100 111111111111


Q ss_pred             HHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCCCeeec
Q psy13410        296 LFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVEC  375 (493)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~~~~  375 (493)
                      +.    .+....  +...+|.                                                           
T Consensus       229 ~~----~l~~~a--~~aLlPl-----------------------------------------------------------  243 (524)
T PF05977_consen  229 LF----NLFASA--VWALLPL-----------------------------------------------------------  243 (524)
T ss_pred             HH----HHhhhH--HHHhhhH-----------------------------------------------------------
Confidence            11    111111  1112222                                                           


Q ss_pred             cCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhh
Q psy13410        376 QHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKS  455 (493)
Q Consensus       376 ~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~  455 (493)
                                    .....++   .++...|++.+..++|+++|+++.+++.+|+++++.+..+.++.+++.+.+++.++
T Consensus       244 --------------~a~~~l~---~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~  306 (524)
T PF05977_consen  244 --------------FARDVLG---GGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPS  306 (524)
T ss_pred             --------------HHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchH
Confidence                          0000111   12446789999999999999999999999999999988898889999899999999


Q ss_pred             HHHHHHHHHHHhccccchhhhHhhhhhcccCC
Q psy13410        456 FWQFALCRFFVGLSFDNCFTMMYILETNRKPF  487 (493)
Q Consensus       456 ~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~  487 (493)
                      .+...+..++.|++.....+...+.+.+..|.
T Consensus       307 ~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~  338 (524)
T PF05977_consen  307 FWLALIALFLAGAAWIIANSSLNTLVQLSVPD  338 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            98888889999999888888888999998885

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.42  E-value=8e-12  Score=119.39  Aligned_cols=285  Identities=14%  Similarity=0.087  Sum_probs=196.7

Q ss_pred             CccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q psy13410         49 DTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCR  128 (493)
Q Consensus        49 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R  128 (493)
                      +..++  +.+|+++   +....++++++..+..++.+++..+++.|+|.++.+.+++++.+++.++=... +...++.+-
T Consensus        33 PLL~~--Ir~~~gl---s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt  106 (395)
T COG2807          33 PLLDE--IRQDLGL---SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGT  106 (395)
T ss_pred             hhHHH--HHHHhcc---cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence            44455  8888888   78889999999999999999999999999999999999999999999888777 888999999


Q ss_pred             HHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhh
Q psy13410        129 FFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV------YFSQIFITVIPEHY  202 (493)
Q Consensus       129 ~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~------w~~~~~~~~i~~~~  202 (493)
                      .+.|.|++....+.+..|-+.+|++--         ...|.+......+..+++.+...+      ||..+.+-++|.++
T Consensus       107 ~l~G~gIav~nVLLPslIK~~Fpk~~~---------~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~all  177 (395)
T COG2807         107 LLAGAGIAVINVLLPSLIKRDFPKRVG---------LMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALL  177 (395)
T ss_pred             HHHHhhHHHHHHhhhHHHHhhcccchh---------hHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHH
Confidence            999999999999999999999997522         233334444444444444433333      99888887777765


Q ss_pred             --heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhc
Q psy13410        203 --WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENL  280 (493)
Q Consensus       203 --~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  280 (493)
                        ..++|...|         ++        ....+.+.                              .+-.+  +++  
T Consensus       178 Al~~WlPq~~r---------~~--------~~~~~~~~------------------------------~~~~~--vw~--  206 (395)
T COG2807         178 ALLIWLPQALR---------EQ--------AASIATKL------------------------------VSVRK--VWR--  206 (395)
T ss_pred             HHHHHhhhccc---------cc--------cccccccc------------------------------ccccc--ccc--
Confidence              345565433         10        00000000                              00001  222  


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeeccccccc
Q psy13410        281 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLG  360 (493)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~  360 (493)
                         .+    ..+.+.+..-+.++.+|.  ...|+|.                                            
T Consensus       207 ---~~----~aW~vtLfmGlqS~~~Y~--~~~WLP~--------------------------------------------  233 (395)
T COG2807         207 ---SP----LAWQVTLFMGLQSLLYYI--VIGWLPA--------------------------------------------  233 (395)
T ss_pred             ---Cc----hhHHHHHHHHhhHHHHHH--HHHHHHH--------------------------------------------
Confidence               11    122233334445555666  6777775                                            


Q ss_pred             CCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhc-CCchHHHHH
Q psy13410        361 SGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLT  439 (493)
Q Consensus       361 ~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~-Grr~~l~~~  439 (493)
                                                    +..+-++   ++.++|++.+...+..++.++..-.+.+|. .+|+..+..
T Consensus       234 ------------------------------ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~  280 (395)
T COG2807         234 ------------------------------ILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLA  280 (395)
T ss_pred             ------------------------------HHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence                                          1111111   245788999999999999999999999975 566666666


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccC
Q psy13410        440 NLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKP  486 (493)
Q Consensus       440 ~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p  486 (493)
                      ...+.++...+.+.+....+.- .+++|++.++.++...+.+.+..+
T Consensus       281 ~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~  326 (395)
T COG2807         281 LLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSS  326 (395)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcC
Confidence            6666666666666553332222 589999999999999888877655

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.41  E-value=5.4e-11  Score=115.48  Aligned_cols=96  Identities=18%  Similarity=0.125  Sum_probs=90.2

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHH---hcccHHHHHHHHHHHh
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITA---FTKSFWQFALCRFFVG  132 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a---~a~s~~~l~~~R~l~G  132 (493)
                      +++.+++   +..+.+++..+++.|+.+++++.|.+.+|+|+|..+++++.++++++++..   ..++|..++++-|+.|
T Consensus        39 l~~~f~l---s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila  115 (422)
T COG0738          39 LKEVFDL---TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILA  115 (422)
T ss_pred             HHHHhCc---cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            7788888   788899999999999999999999999999999999999999999999884   6689999999999999


Q ss_pred             hcccchhhhhhhhccccccccC
Q psy13410        133 LSFDNCFTMMYILGMPIYKTRN  154 (493)
Q Consensus       133 i~~g~~~~~~~~~i~e~~~~~~  154 (493)
                      .|.|...+.+-.|+....+++.
T Consensus       116 ~Gi~~LetaaNp~v~~lg~~~~  137 (422)
T COG0738         116 SGIGLLETAANPYVTLLGKPES  137 (422)
T ss_pred             hhhHHHHhccchHHHHhCCchh
Confidence            9999999999999999999853

>PRK09669 putative symporter YagG; Provisional

Probab=99.38  E-value=4.8e-11  Score=123.20  Aligned_cols=97  Identities=13%  Similarity=0.101  Sum_probs=72.3

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc----cCCh-hHHHHHHHHHHHHHHHHHhccc------HHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR----FGRV-PALVLTNLVGFIFGVITAFTKS------FWQF  124 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr----~GRr-~~l~~~~~~~~i~~~~~a~a~s------~~~l  124 (493)
                      ..++.++   +...++.+.++..+.-++..|+.|.++||    +||| +.++.+.+..+++.++....|+      +..+
T Consensus        36 ~t~~~gl---s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~  112 (444)
T PRK09669         36 YTDVFGL---SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA  112 (444)
T ss_pred             HHHhcCC---CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence            5566777   67789999999999999999999999998    7874 5566777777777766555543      4556


Q ss_pred             HHHHHHHhhcccchhhhhhhhccccccc-cCc
Q psy13410        125 ALCRFFVGLSFDNCFTMMYILGMPIYKT-RNL  155 (493)
Q Consensus       125 ~~~R~l~Gi~~g~~~~~~~~~i~e~~~~-~~R  155 (493)
                      ++.-.+.+.+.......-.++.+|+.+. ++|
T Consensus       113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR  144 (444)
T PRK09669        113 CVTYILLSLVYTAINVPYCAMPGAITNDPRER  144 (444)
T ss_pred             HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHH
Confidence            6666666666666666667888898854 445

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.37  E-value=2e-11  Score=125.38  Aligned_cols=84  Identities=19%  Similarity=0.398  Sum_probs=74.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK--SFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+....+..++.+++.++.++++||+|+|+.+..+.++.+++.+...+.+  +.+..++..++.|++.+..+...+++.
T Consensus       261 ~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~  340 (428)
T PF13347_consen  261 LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAML  340 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccccccc
Confidence            456666778899999999999999999999999999999999888887765  888888999999999999999999999


Q ss_pred             hcccCC
Q psy13410        482 TNRKPF  487 (493)
Q Consensus       482 ~e~~p~  487 (493)
                      +|+.+.
T Consensus       341 ad~id~  346 (428)
T PF13347_consen  341 ADVIDY  346 (428)
T ss_pred             ccchhh
Confidence            999873

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.35  E-value=4.1e-12  Score=132.78  Aligned_cols=163  Identities=13%  Similarity=0.109  Sum_probs=109.8

Q ss_pred             cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHhh
Q psy13410         57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVI---TAFTKSFWQFALCRFFVGL  133 (493)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~---~a~a~s~~~l~~~R~l~Gi  133 (493)
                      .++++.   +....++..+...++..++.++.|+++||+|||+++..+.++..++.+.   ...+++...++++|++.|+
T Consensus       278 ~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  354 (490)
T PRK10642        278 SHNLHY---SEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAV  354 (490)
T ss_pred             HHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            344554   3445667778889999999999999999999999998887655544432   2335678888999999999


Q ss_pred             cccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHh----hhhh
Q psy13410        134 SFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV------YFSQIFITVIP----EHYW  203 (493)
Q Consensus       134 ~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~------w~~~~~~~~i~----~~~~  203 (493)
                      +.+........++.|.+|++.|+...        |...+....++.++..+.+..      |+..+++..++    .+..
T Consensus       355 ~~~~~~g~~~~~~~~~~p~~~Rg~~~--------g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~  426 (490)
T PRK10642        355 ILNCFTGVMASTLPAMFPTHIRYSAL--------AAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG  426 (490)
T ss_pred             HHHHHHHHHHHHHHHHCCCccchHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            88877788888899999998773222        222233333333333333322      34333222222    2234


Q ss_pred             eeccCCCchhhhhhc-----cCHHHHHHHHHHHh
Q psy13410        204 CRVPELSHLDYADKE-----ESHEEADTIAESYI  232 (493)
Q Consensus       204 ~~~pesp~~~~l~~~-----~~~~~a~~~l~~~~  232 (493)
                      +++||||+  |+.++     +|++|+++.+++++
T Consensus       427 ~~~pes~~--~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        427 VTMKETAN--RPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHhccccC--CCCCCccccccchhhHHHHhhccc
Confidence            56799998  76654     89999999998885

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.31  E-value=2e-10  Score=119.57  Aligned_cols=97  Identities=11%  Similarity=0.155  Sum_probs=70.9

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhc----ccCC-hhHHHHHHHHHHHHHHHHHhccc------HHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVAD----RFGR-VPALVLTNLVGFIFGVITAFTKS------FWQF  124 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~D----r~GR-r~~l~~~~~~~~i~~~~~a~a~s------~~~l  124 (493)
                      ..+..++   +...+|.+..+.-+--++..|++|.++|    |+|| |+.++.+.+..+++.++.-..++      +..+
T Consensus        33 yt~v~Gl---s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~  109 (473)
T PRK10429         33 YTDVVGL---SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFV  109 (473)
T ss_pred             HHHhcCC---CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            3455566   6778999999999999999999999999    6699 66677787777777655544332      3345


Q ss_pred             HHHHHHHhhcccchhhhhhhhcccccc-ccCc
Q psy13410        125 ALCRFFVGLSFDNCFTMMYILGMPIYK-TRNL  155 (493)
Q Consensus       125 ~~~R~l~Gi~~g~~~~~~~~~i~e~~~-~~~R  155 (493)
                      ++.-.+.+++.....+.-.+++.|+.+ +++|
T Consensus       110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR  141 (473)
T PRK10429        110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKRER  141 (473)
T ss_pred             HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHH
Confidence            556666677777777777788899884 5566

>KOG0255|consensus

Probab=99.28  E-value=6.4e-11  Score=124.85  Aligned_cols=199  Identities=33%  Similarity=0.531  Sum_probs=151.3

Q ss_pred             hhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecc
Q psy13410        276 FGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNY  355 (493)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  355 (493)
                      .....++.+++|...........+.........++....|.++.|.......                ..+.|.++...-
T Consensus         6 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----------------~~~~c~~~~~~~   69 (521)
T KOG0255|consen    6 ILSSVGDFGRYQKLLLLLLGLPSIFSALHSFAQIFLAFVPDHHCTEWGCLND----------------AEDSCLVYWDPT   69 (521)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHhhccCCCchhhhhhcccC----------------CcccceecccCc
Confidence            3345566789999888888888877777777777888888744441111100                345566664311


Q ss_pred             cc-cccCC-CCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCc
Q psy13410        356 TH-LLGSG-ITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRV  433 (493)
Q Consensus       356 ~~-l~~~~-~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr  433 (493)
                      .. ....+ ............|.++|.|+... ...+...++++.|++.....+..+++.+|..+|+++.|.++||+|||
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk  148 (521)
T KOG0255|consen   70 LDPANPLNWPSWKKWLLVIVICLDGWVYDYGS-SVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRK  148 (521)
T ss_pred             cCcCCccccccccccccccccccceeEecCCC-CcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccH
Confidence            11 11000 00111112347899999998773 34445556999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCCcc
Q psy13410        434 PALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGCF  491 (493)
Q Consensus       434 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~~  491 (493)
                      ++++.+.++..++.+..++++++..+++++++.|++.++...+.+.+++|+++++-|.
T Consensus       149 ~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~  206 (521)
T KOG0255|consen  149 PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRG  206 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhh
Confidence            9999999999999999999999999999999999999999999999999999987663

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.26  E-value=3.8e-09  Score=108.96  Aligned_cols=85  Identities=26%  Similarity=0.384  Sum_probs=68.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCc--hHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHhccccch
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRV--PALVLTNLVGFIFGVVTAF--------TKSFWQFALCRFFVGLSFDNC  473 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr--~~l~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~  473 (493)
                      +......+..+.+++|+++.|++.||+|.|  +++....++..+..+...+        .++.+.+.+..++.|+..|+.
T Consensus       318 ~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~  397 (477)
T PF11700_consen  318 QLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGI  397 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhH
Confidence            455666777899999999999999999999  7777766665443333333        456777888889999999999


Q ss_pred             hhhHhhhhhcccCCC
Q psy13410        474 FTMMYILETNRKPFP  488 (493)
Q Consensus       474 ~~~~~~~~~e~~p~~  488 (493)
                      ++..=++.+|+.|+.
T Consensus       398 qs~sRs~~~~LiP~g  412 (477)
T PF11700_consen  398 QSASRSLFSRLIPPG  412 (477)
T ss_pred             HHHHHHHHHHhCCCc
Confidence            999999999999974

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.23  E-value=1.2e-09  Score=112.46  Aligned_cols=95  Identities=19%  Similarity=0.141  Sum_probs=75.7

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHhh
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVITAFTK-SFWQFALCRFFVGL  133 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~a~a~-s~~~l~~~R~l~Gi  133 (493)
                      +.++++.   +..+.+.+.+.+.+...+++++.|+++||+ |||++++++.++.+++.++.+... +...++++-.+.++
T Consensus        36 L~~~lgl---s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~i  112 (493)
T PRK15462         36 LTNQLKY---DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVC  112 (493)
T ss_pred             HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence            4455666   667788899999999999999999999999 999999999999999988777643 23334545455556


Q ss_pred             cccchhhhhhhhcccccccc
Q psy13410        134 SFDNCFTMMYILGMPIYKTR  153 (493)
Q Consensus       134 ~~g~~~~~~~~~i~e~~~~~  153 (493)
                      |.|...+...++++|.+|++
T Consensus       113 G~G~~~~~~~alv~elfp~~  132 (493)
T PRK15462        113 GYGLFKSNVSCLLGELYEPT  132 (493)
T ss_pred             hcccccccHHHHHHHHCCCC
Confidence            66777777788999999986

>PRK09848 glucuronide transporter; Provisional

Probab=99.21  E-value=1.6e-09  Score=111.95  Aligned_cols=81  Identities=12%  Similarity=0.165  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhccccchhhhHhhhhhcc
Q psy13410        407 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK--SFWQFALCRFFVGLSFDNCFTMMYILETNR  484 (493)
Q Consensus       407 ~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~  484 (493)
                      +......++.+++.++.++++||+|+|+.+..+.++.+++.+...+.+  +.+...+..++.|+|.+...+...++.+|.
T Consensus       268 ~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~  347 (448)
T PRK09848        268 LVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADT  347 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444567788999999999999999999999888777766665543  455555667788899888899999999998


Q ss_pred             cCC
Q psy13410        485 KPF  487 (493)
Q Consensus       485 ~p~  487 (493)
                      .|.
T Consensus       348 ~~~  350 (448)
T PRK09848        348 VEY  350 (448)
T ss_pred             hhh
Confidence            874

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.20  E-value=1.3e-09  Score=110.28  Aligned_cols=90  Identities=22%  Similarity=0.291  Sum_probs=77.7

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccC-ChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFG-RVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI  144 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~G-Rr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~  144 (493)
                      +..++|.+.++..+...++++++|.++||++ +|+.+.++.++.++........++++.+++.-++..+...+..|..-+
T Consensus        35 s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ds  114 (400)
T PF03825_consen   35 SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDS  114 (400)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHH
Confidence            7788999999999999999999999999986 577887888888887777778899999999988899988888888888


Q ss_pred             hccccccccCc
Q psy13410        145 LGMPIYKTRNL  155 (493)
Q Consensus       145 ~i~e~~~~~~R  155 (493)
                      +..+...++++
T Consensus       115 i~~~~~~~~~~  125 (400)
T PF03825_consen  115 IALSYLGDRGK  125 (400)
T ss_pred             HHHHHcccccC
Confidence            88888775433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.17  E-value=5.4e-09  Score=105.97  Aligned_cols=97  Identities=12%  Similarity=-0.061  Sum_probs=60.2

Q ss_pred             ecccccccccccchhhHH--HHHHHHHHHhhhhhh-hhhhcccCChhHHHHHHHHH-HHHHHHHH-h--ccc-HHHHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWA--QAFFFCGAIVGGLVF-GWVADRFGRVPALVLTNLVG-FIFGVITA-F--TKS-FWQFALC  127 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~--~s~~~lg~~ig~~i~-g~l~Dr~GRr~~l~~~~~~~-~i~~~~~a-~--a~s-~~~l~~~  127 (493)
                      +.+|.+.   +..+.+++  .++..+...+.+|++ ++.+||+|||+.+++.+.+. .......+ +  ..+ ...++..
T Consensus        27 ~l~~~g~---~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (390)
T TIGR02718        27 LLREDGA---PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGL  103 (390)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence            4455565   67778886  466678887888888 55799999999976665432 22222222 2  222 3344555


Q ss_pred             HHHHhhcccchhhhhhhhccccccccCc
Q psy13410        128 RFFVGLSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       128 R~l~Gi~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      -++.++..+...+..-.+..|..+++++
T Consensus       104 ~~~~~~~~a~~d~~~d~~~~~~~~~~~~  131 (390)
T TIGR02718       104 LACASLASATQDIATDGMAAEHFNGRTL  131 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            5556666666666666667777766654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.15  E-value=4.4e-10  Score=111.99  Aligned_cols=86  Identities=14%  Similarity=0.170  Sum_probs=76.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN  483 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  483 (493)
                      ..|++.++-.+..++...+..++.+|+|.|+.++++..++.+=.++.+++++.+.+.+...+-++-.+.......-|+++
T Consensus       260 ~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~  339 (412)
T PF01306_consen  260 MYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITA  339 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888888899999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             ccCCCC
Q psy13410        484 RKPFPG  489 (493)
Q Consensus       484 ~~p~~~  489 (493)
                      .+|+|-
T Consensus       340 ~fd~rl  345 (412)
T PF01306_consen  340 HFDKRL  345 (412)
T ss_dssp             HS-GGG
T ss_pred             hCCHhH
Confidence            999874

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.15  E-value=7.1e-10  Score=115.00  Aligned_cols=95  Identities=19%  Similarity=0.078  Sum_probs=74.9

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccC-----ChhHHHHHHHHHH-HHHHHHHhcccHHHHH-HHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFG-----RVPALVLTNLVGF-IFGVITAFTKSFWQFA-LCR  128 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~G-----Rr~~l~~~~~~~~-i~~~~~a~a~s~~~l~-~~R  128 (493)
                      +.+++++   +..+.+...++..+...+-.+ ||+++||++     ||+.++++.++.. ++....+..++...+. +.+
T Consensus        52 l~~~lg~---s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~  127 (468)
T TIGR00788        52 LTDDLGL---DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFI  127 (468)
T ss_pred             HHHhcCC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            5667787   677788888999999998655 999999998     8888888887773 4433344445654444 489


Q ss_pred             HHHhhcccchhhhhhhhccccccccCc
Q psy13410        129 FFVGLSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       129 ~l~Gi~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      ++.+++.+...++.-+++.|..+ |++
T Consensus       128 ~l~~~~~a~~dv~~da~~~e~~~-~~~  153 (468)
T TIGR00788       128 FLAALAKALYDVLVDSLYSERIR-ESP  153 (468)
T ss_pred             HHHHHHHHHHHHhHHHHHhhhhh-cCC
Confidence            99999999999999999999999 544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.06  E-value=5e-10  Score=95.18  Aligned_cols=83  Identities=20%  Similarity=0.298  Sum_probs=77.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccccccc
Q psy13410         74 QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTR  153 (493)
Q Consensus        74 ~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~  153 (493)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.++..++++++.+++.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34667889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Ccc
Q psy13410        154 NLD  156 (493)
Q Consensus       154 ~R~  156 (493)
                      +|+
T Consensus        84 ~~~   86 (141)
T TIGR00880        84 ERG   86 (141)
T ss_pred             hhh
Confidence            773

>PRK11462 putative transporter; Provisional

Probab=99.03  E-value=5.5e-08  Score=100.78  Aligned_cols=95  Identities=16%  Similarity=0.068  Sum_probs=65.1

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc----cCChhHH-HHHHHHHHHHHHHHHhccc------HHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR----FGRVPAL-VLTNLVGFIFGVITAFTKS------FWQF  124 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr----~GRr~~l-~~~~~~~~i~~~~~a~a~s------~~~l  124 (493)
                      ..+..++   +...+|.+..+.-+-=++..|+.|.++||    +|||+.+ +++.+..+++.++.-..|+      +..+
T Consensus        36 yt~~~Gl---~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~  112 (460)
T PRK11462         36 YTDIFGI---PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA  112 (460)
T ss_pred             HHHhhCC---CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence            3445555   55567777777777778999999999995    7987555 4566777777766554542      3345


Q ss_pred             HHHHHHHhhcccchhhhhhhhcccccccc
Q psy13410        125 ALCRFFVGLSFDNCFTMMYILGMPIYKTR  153 (493)
Q Consensus       125 ~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~  153 (493)
                      ++.-.+..++.......-.++..|+.+..
T Consensus       113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~  141 (460)
T PRK11462        113 AITYTLLTLLYTVVNIPYCALGGVITNDP  141 (460)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHhcCCH
Confidence            55555567777777777777888888744

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.02  E-value=1.9e-07  Score=91.72  Aligned_cols=85  Identities=18%  Similarity=0.210  Sum_probs=74.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN  483 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  483 (493)
                      +..+.....++.+++|++++|+|.||+|-|+++..+.++..+..+...+......+.+...+.|+..|+.++..=+|..+
T Consensus       289 ~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~  368 (438)
T COG2270         289 ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLAR  368 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            56677778899999999999999999999999999988888877777777777777778889999999999999999999


Q ss_pred             ccCCC
Q psy13410        484 RKPFP  488 (493)
Q Consensus       484 ~~p~~  488 (493)
                      .+|++
T Consensus       369 lvp~~  373 (438)
T COG2270         369 LVPKG  373 (438)
T ss_pred             hCCCc
Confidence            99974

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.98  E-value=2.3e-09  Score=115.64  Aligned_cols=85  Identities=14%  Similarity=0.163  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccc
Q psy13410         71 TWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIY  150 (493)
Q Consensus        71 ~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~  150 (493)
                      .+...+..++..+|.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++.+++..++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44566777999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCc
Q psy13410        151 KTRNL  155 (493)
Q Consensus       151 ~~~~R  155 (493)
                      |++.|
T Consensus       678 Pt~~R  682 (742)
T TIGR01299       678 PSDKR  682 (742)
T ss_pred             CHHHH
Confidence            99866

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG4686|consensus

Probab=98.93  E-value=4.8e-09  Score=96.79  Aligned_cols=115  Identities=16%  Similarity=0.201  Sum_probs=86.9

Q ss_pred             hhhhcccccc----cccCccceeeeccccccccc-ccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHH
Q psy13410         36 DTLSTWLNWV----CTQDTLSTWALTPQLNWVCT-QDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGF  109 (493)
Q Consensus        36 ~~~~~~~~w~----~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~  109 (493)
                      ..+.|++++.    ||.+.-    ++.+++.+.+ +.++..++-++|..--.+-+.+.|++.|| +|-|..-++-+.+..
T Consensus        46 lv~mc~lgfgsyfcyd~p~a----lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~  121 (459)
T KOG4686|consen   46 LVFMCLLGFGSYFCYDAPGA----LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF  121 (459)
T ss_pred             HHHHHHhcccceeecCCchh----hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence            3446666654    444332    4444444322 34577888899999999999999999996 688887777777777


Q ss_pred             HHHHHHHh---cccHHHHHHHHHHHhhcccchhhhhhhhccccccccC
Q psy13410        110 IFGVITAF---TKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRN  154 (493)
Q Consensus       110 i~~~~~a~---a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~  154 (493)
                      ++.++.+.   .+.+|+++++||+-|+|.-..-.+...|+.-|+..|+
T Consensus       122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE  169 (459)
T KOG4686|consen  122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE  169 (459)
T ss_pred             HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc
Confidence            78777764   6899999999999999987777788889999998863

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.88  E-value=3.7e-07  Score=92.23  Aligned_cols=83  Identities=11%  Similarity=0.143  Sum_probs=70.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK--SFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ...+.......+.+++.++..++++|+|+|+++.++.++.+++.++..+.+  +....++..++.+++.+...+..++++
T Consensus       273 ~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~  352 (467)
T COG2211         273 FAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMV  352 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHh
Confidence            455566666777778899999999999999999999999999888888765  567777777899999999999999999


Q ss_pred             hcccC
Q psy13410        482 TNRKP  486 (493)
Q Consensus       482 ~e~~p  486 (493)
                      +|...
T Consensus       353 ~d~vD  357 (467)
T COG2211         353 ADTVD  357 (467)
T ss_pred             cchhh
Confidence            99865

>TIGR01272 gluP glucose/galactose transporter

Probab=98.80  E-value=2.4e-07  Score=90.73  Aligned_cols=86  Identities=16%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.++..+.+..+.++|.+++++++||+|+|+.+.++..+..++.++....++... ....++.|++.+..+|...+..
T Consensus       177 ~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a  255 (310)
T TIGR01272       177 EDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLA  255 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            346788889999999999999999999999999888887777776655555444333 3456688999999999999999


Q ss_pred             hcccCCC
Q psy13410        482 TNRKPFP  488 (493)
Q Consensus       482 ~e~~p~~  488 (493)
                      .+.+|++
T Consensus       256 ~~~~~~~  262 (310)
T TIGR01272       256 LNALGRH  262 (310)
T ss_pred             Hhhhhhh
Confidence            9988764

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.80  E-value=8.8e-10  Score=115.27  Aligned_cols=106  Identities=15%  Similarity=0.175  Sum_probs=3.0

Q ss_pred             ccccCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc----cc
Q psy13410         45 VCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT----KS  120 (493)
Q Consensus        45 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a----~s  120 (493)
                      .|......+  |++.|++   ++.+.|++.+.+-++..+..++..++++|..|-+.+-.+.+++++++++.++=    +.
T Consensus        20 g~~~~~ltt--iErRF~l---~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~   94 (539)
T PF03137_consen   20 GYVNSSLTT--IERRFGL---SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGP   94 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHH--HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence            344555566  9999999   88999999999999999999999999999999999999999999999887631    10


Q ss_pred             ----------------------------------------------HHHHHHHHHHHhhcccchhhhhhhhccccccccC
Q psy13410        121 ----------------------------------------------FWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRN  154 (493)
Q Consensus       121 ----------------------------------------------~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~  154 (493)
                                                                    +..++++.++.|+|....+++..+|+=|..++++
T Consensus        95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~  174 (539)
T PF03137_consen   95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN  174 (539)
T ss_dssp             ---------------------------------------------------------SSS--------------------
T ss_pred             CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence                                                          2448889999999999999999999999999886


Q ss_pred             c
Q psy13410        155 L  155 (493)
Q Consensus       155 R  155 (493)
                      .
T Consensus       175 s  175 (539)
T PF03137_consen  175 S  175 (539)
T ss_dssp             -
T ss_pred             C
Confidence            5

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.77  E-value=1.6e-06  Score=85.40  Aligned_cols=86  Identities=22%  Similarity=0.268  Sum_probs=70.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhh-hcCCchHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhccccchhhhH
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVAD-RFGRVPALVLTNLVGFIFGVVTAFT---KSFWQFALCRFFVGLSFDNCFTMM  477 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~D-r~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~  477 (493)
                      ..+++-++...+.|.++|..+.|++.. |.++++...+++.+..++..+..++   .+.+.+....+++|++.|......
T Consensus       243 v~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vga  322 (403)
T PF03209_consen  243 VGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGA  322 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHH
Confidence            346788889999999999999997777 6788888888888888777666553   467788889999999998888888


Q ss_pred             hhhhhcccCC
Q psy13410        478 YILETNRKPF  487 (493)
Q Consensus       478 ~~~~~e~~p~  487 (493)
                      .+.+++..++
T Consensus       323 ls~mM~lt~~  332 (403)
T PF03209_consen  323 LSLMMDLTSA  332 (403)
T ss_pred             HHHHHhCCCC
Confidence            8888888764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.75  E-value=6.8e-07  Score=86.65  Aligned_cols=88  Identities=17%  Similarity=0.168  Sum_probs=76.3

Q ss_pred             ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccc
Q psy13410         58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDN  137 (493)
Q Consensus        58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~  137 (493)
                      ++++.   ++.+++.+....+...++.+++.|.++||+|||+.-++-+++.+++++ +-..++++.++++|++.|++...
T Consensus        62 ~~yg~---~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSL  137 (354)
T PF05631_consen   62 ESYGF---SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSL  137 (354)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHH
Confidence            45565   677799899999999999999999999999999999999999999996 55668999999999999999999


Q ss_pred             hhhhhhhhc-ccc
Q psy13410        138 CFTMMYILG-MPI  149 (493)
Q Consensus       138 ~~~~~~~~i-~e~  149 (493)
                      .+++-.+.. .|.
T Consensus       138 LfS~FEsW~V~Eh  150 (354)
T PF05631_consen  138 LFSAFESWMVHEH  150 (354)
T ss_pred             HHHHHHHHHHHHH
Confidence            998888744 443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.62  E-value=1.4e-05  Score=80.49  Aligned_cols=89  Identities=16%  Similarity=0.120  Sum_probs=76.9

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHhhcccchhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVITAFT--KSFWQFALCRFFVGLSFDNCFTMM  142 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~a~a--~s~~~l~~~R~l~Gi~~g~~~~~~  142 (493)
                      +++++.-+.++|..-.=...++.|+++||+ |+|+++.++.++.++|.++.+.+  .+...++++-.+.++|.|..=+..
T Consensus        59 ~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~Ni  138 (498)
T COG3104          59 DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNI  138 (498)
T ss_pred             ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccH
Confidence            444455555565555556788999999997 99999999999999999999998  489999999999999999999999


Q ss_pred             hhhccccccccC
Q psy13410        143 YILGMPIYKTRN  154 (493)
Q Consensus       143 ~~~i~e~~~~~~  154 (493)
                      ..++.|.+|++.
T Consensus       139 S~llg~ly~~~D  150 (498)
T COG3104         139 SSLLGELYPKDD  150 (498)
T ss_pred             HHHHHHhcCCCC
Confidence            999999999984

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.62  E-value=2.1e-07  Score=94.48  Aligned_cols=95  Identities=12%  Similarity=0.045  Sum_probs=77.0

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      ++++++.   +..+.+++.++..++..++.+++|+++||+|||+.+..+.+...+.......+++.+.+++.|++.+++.
T Consensus       243 l~~~~~~---~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  319 (393)
T PRK15011        243 IINELHL---PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYI  319 (393)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3455665   5566788888878888899999999999999999888877766666555566788888899999999988


Q ss_pred             cchhhhhhhhcccccccc
Q psy13410        136 DNCFTMMYILGMPIYKTR  153 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~  153 (493)
                      |...+....+..|.+|++
T Consensus       320 g~~~~~~~~~~~~~~p~~  337 (393)
T PRK15011        320 GILGGIGMLYFQDLMPGQ  337 (393)
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            888888888889999864

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.55  E-value=8e-07  Score=91.12  Aligned_cols=89  Identities=21%  Similarity=0.348  Sum_probs=81.7

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.++..++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+.+++++.|++.+..++....++
T Consensus        52 ~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~  131 (426)
T PRK12307         52 DMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYA  131 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|+|-+
T Consensus       132 ~~~~~~~~r  140 (426)
T PRK12307        132 VESWPKHLK  140 (426)
T ss_pred             HHhCCHhHh
Confidence            999997643

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.55  E-value=7.1e-07  Score=90.42  Aligned_cols=89  Identities=15%  Similarity=0.181  Sum_probs=81.5

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.+++..+.+.+++.|++.+...+....++
T Consensus        46 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i  125 (405)
T TIGR00891        46 TVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYV  125 (405)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            34688999999999999999999999999999999999999999888888889999999999999999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|++.+
T Consensus       126 ~~~~~~~~~  134 (405)
T TIGR00891       126 IESWPKHLR  134 (405)
T ss_pred             HHhCChhhh
Confidence            999997654

>KOG2325|consensus

Probab=98.53  E-value=2.2e-06  Score=86.95  Aligned_cols=93  Identities=15%  Similarity=0.184  Sum_probs=79.0

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCC-hhHHHHHHHHHHHHHHHH-Hhc---c-cHHHHHHHHHHHhhcccchh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGR-VPALVLTNLVGFIFGVIT-AFT---K-SFWQFALCRFFVGLSFDNCF  139 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GR-r~~l~~~~~~~~i~~~~~-a~a---~-s~~~l~~~R~l~Gi~~g~~~  139 (493)
                      +.+..||++++..+|.+++++++|+...|.|+ |+.++.+.++..+++++- +.+   + +.+.++++|++.|+|. +..
T Consensus        69 ~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~  147 (488)
T KOG2325|consen   69 TATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNF  147 (488)
T ss_pred             CcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccH
Confidence            56779999999999999999999999999997 888899999999999888 332   3 6889999999999996 456


Q ss_pred             hhhhhhccccccccCccccc
Q psy13410        140 TMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       140 ~~~~~~i~e~~~~~~R~~~~  159 (493)
                      .+.-+|+++....+.|..+.
T Consensus       148 a~lR~Y~a~~s~~~dR~rA~  167 (488)
T KOG2325|consen  148 AVLRAYIADASTVEDRPRAF  167 (488)
T ss_pred             HHHHHHHHhccCccchHHHH
Confidence            77889999987777664333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.49  E-value=7e-07  Score=89.34  Aligned_cols=91  Identities=14%  Similarity=0.092  Sum_probs=78.5

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHhhcccchhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSF--WQFALCRFFVGLSFDNCFTMMY  143 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~--~~l~~~R~l~Gi~~g~~~~~~~  143 (493)
                      +..+.+++.+.+.++..++.++.|+++||+|||+.+..+.++..++.++..+.++.  ..+++..++.|++.|...+...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  317 (377)
T TIGR00890       238 SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFP  317 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccH
Confidence            45567888999999999999999999999999999999999999998888877753  3355678889999998888888


Q ss_pred             hhccccccccCcc
Q psy13410        144 ILGMPIYKTRNLD  156 (493)
Q Consensus       144 ~~i~e~~~~~~R~  156 (493)
                      .++.|.+|+++|+
T Consensus       318 ~~~~~~~~~~~~~  330 (377)
T TIGR00890       318 SLVSDIFGPANSA  330 (377)
T ss_pred             HHHHHHhhhhhhh
Confidence            9999999998773

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.48  E-value=6.5e-07  Score=89.90  Aligned_cols=94  Identities=18%  Similarity=0.208  Sum_probs=77.5

Q ss_pred             cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhccc
Q psy13410         57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFD  136 (493)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g  136 (493)
                      .++.+.   +..+.+++.+...+...++.++.|+++||+|||+++.++.++..++.+...+.++.+.+++.+++.|++.|
T Consensus       227 ~~~~g~---~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  303 (375)
T TIGR00899       227 IHELGL---PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG  303 (375)
T ss_pred             HHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555   45567777777777778889999999999999999998888777666666677888889999999999999


Q ss_pred             chhhhhhhhcccccccc
Q psy13410        137 NCFTMMYILGMPIYKTR  153 (493)
Q Consensus       137 ~~~~~~~~~i~e~~~~~  153 (493)
                      ...+....++.|..|++
T Consensus       304 ~~~~~~~~~~~~~~~~~  320 (375)
T TIGR00899       304 ILAGIGMLYFQDLMPGR  320 (375)
T ss_pred             HHHHHHHHHHHHhCcch
Confidence            98888889999998864

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.48  E-value=7.5e-07  Score=91.04  Aligned_cols=88  Identities=16%  Similarity=0.109  Sum_probs=81.5

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.+++.+++.++..++.++.|+++||+|||+.+..+.++.+++.++..++++...+++.+++.|++.+...+....++
T Consensus        42 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~  121 (412)
T TIGR02332        42 ATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYL  121 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            44789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCC
Q psy13410        482 TNRKPFPG  489 (493)
Q Consensus       482 ~e~~p~~~  489 (493)
                      .|.+|++.
T Consensus       122 ~~~~~~~~  129 (412)
T TIGR02332       122 TFWFPAYF  129 (412)
T ss_pred             HHHcCHHH
Confidence            99999643

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.48  E-value=5.1e-07  Score=93.55  Aligned_cols=90  Identities=12%  Similarity=0.165  Sum_probs=72.3

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhccc--CChhHHHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRF--GRVPALVL--TNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTM  141 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~--GRr~~l~~--~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~  141 (493)
                      +..+.+++.++..++..++.++.|.++||.  ++|+...+  +.++.+++.++.+.+++++.+++.+++.|++.+...+.
T Consensus       274 s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~  353 (455)
T TIGR00892       274 DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGAL  353 (455)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHH
Confidence            566788999999999999999999999984  34433333  34444555566677889999999999999999999999


Q ss_pred             hhhhccccccccCc
Q psy13410        142 MYILGMPIYKTRNL  155 (493)
Q Consensus       142 ~~~~i~e~~~~~~R  155 (493)
                      ..+++.|.+|++++
T Consensus       354 ~~~~~~~~~~~~~~  367 (455)
T TIGR00892       354 LFEVLMDLVGAQRF  367 (455)
T ss_pred             HHHHHHHHhhHHHH
Confidence            99999999998654

>KOG2563|consensus

Probab=98.47  E-value=1.5e-05  Score=79.08  Aligned_cols=106  Identities=14%  Similarity=0.191  Sum_probs=84.5

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc------ccHH--HHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT------KSFW--QFALC  127 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a------~s~~--~l~~~  127 (493)
                      +....+-...+.....|+.-+|++.+..-.++..|+.||+|=|..++++..+..+|+.+-..+      +.++  ....+
T Consensus        67 i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~G  146 (480)
T KOG2563|consen   67 INNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTG  146 (480)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHh
Confidence            333333333356667899999999999999999999999999999999999999999988876      2344  67788


Q ss_pred             HHHHhhcccchhhhhhhhccccccccCccccccc
Q psy13410        128 RFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVL  161 (493)
Q Consensus       128 R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~  161 (493)
                      ..+.+.+.-....+-.-+..-|+++++|..+...
T Consensus       147 q~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~  180 (480)
T KOG2563|consen  147 QSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVL  180 (480)
T ss_pred             HHHHHHhhhHhhccccHHHHhhCCcchhhhhhhH
Confidence            8888888777777667788889999888655544

>TIGR00889 2A0110 nucleoside transporter

Probab=98.46  E-value=7.6e-07  Score=91.14  Aligned_cols=90  Identities=12%  Similarity=-0.006  Sum_probs=78.2

Q ss_pred             chhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHhhcccchhhhhh
Q psy13410         68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK----SFWQFALCRFFVGLSFDNCFTMMY  143 (493)
Q Consensus        68 ~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~----s~~~l~~~R~l~Gi~~g~~~~~~~  143 (493)
                      ...+.+.++..++..++.++.|+++||+|||++++.+.++..++..+...+.    +++.+++.+++.|++.+...+...
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5578888999999999999999999999999999999999988877666632    346778899999999999999999


Q ss_pred             hhccccccccCccc
Q psy13410        144 ILGMPIYKTRNLDF  157 (493)
Q Consensus       144 ~~i~e~~~~~~R~~  157 (493)
                      .++.|++|+++|+.
T Consensus       331 ~~i~~~~p~~~~g~  344 (418)
T TIGR00889       331 VFVEKEVPVHIRAS  344 (418)
T ss_pred             HHHHHHCCHHHHHH
Confidence            99999999986643

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG3626|consensus

Probab=98.45  E-value=6.5e-07  Score=94.46  Aligned_cols=103  Identities=13%  Similarity=0.104  Sum_probs=88.7

Q ss_pred             cCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc--------
Q psy13410         48 QDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK--------  119 (493)
Q Consensus        48 ~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~--------  119 (493)
                      .....+  +.+.|++   ++.+.|++.+.+=+|..+...+..+.+-|..|-+.+-+++++++++++++++-+        
T Consensus       117 ~s~Itt--iErRF~i---~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~  191 (735)
T KOG3626|consen  117 NSVITT--IERRFKI---SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEY  191 (735)
T ss_pred             hhhhhh--hhhhcCC---CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchh
Confidence            344455  8888888   777799999999999999999999999999999999999999999999987530        


Q ss_pred             -----------c--------------------------------H-HHHHHHHHHHhhcccchhhhhhhhccccccccCc
Q psy13410        120 -----------S--------------------------------F-WQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       120 -----------s--------------------------------~-~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                                 +                                + ..++++-++.|+|....++...+|+=|...+++.
T Consensus       192 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~S  271 (735)
T KOG3626|consen  192 ELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNS  271 (735)
T ss_pred             hhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCC
Confidence                       0                                1 2578899999999999999999999999988744

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.44  E-value=6.4e-07  Score=91.78  Aligned_cols=91  Identities=9%  Similarity=0.083  Sum_probs=82.6

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL  145 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~  145 (493)
                      +..+.+++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....+
T Consensus       260 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  339 (420)
T PRK09528        260 GTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKY  339 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999998888888899


Q ss_pred             ccccccccCcc
Q psy13410        146 GMPIYKTRNLD  156 (493)
Q Consensus       146 i~e~~~~~~R~  156 (493)
                      +.|.+|++.|+
T Consensus       340 ~~~~~~~~~~a  350 (420)
T PRK09528        340 ITLNFDVRLSA  350 (420)
T ss_pred             HHHHcCcccee
Confidence            99999988763

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.44  E-value=2e-05  Score=78.65  Aligned_cols=82  Identities=17%  Similarity=0.159  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccccc
Q psy13410         72 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYK  151 (493)
Q Consensus        72 ~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~  151 (493)
                      -+.-+..-.+.+..++...+.|..|.|++++++.+...+..++..+.++...+-+.-++-|++.+. ..+-.+|+--..+
T Consensus        45 ~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~  123 (412)
T PF01770_consen   45 EIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVD  123 (412)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecC
Confidence            344555666777888999999999999999999999999999999999999999999999998765 6667788888887


Q ss_pred             ccC
Q psy13410        152 TRN  154 (493)
Q Consensus       152 ~~~  154 (493)
                      +++
T Consensus       124 ~~~  126 (412)
T PF01770_consen  124 KEH  126 (412)
T ss_pred             HHH
Confidence            764

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.44  E-value=1.8e-06  Score=90.74  Aligned_cols=88  Identities=19%  Similarity=0.378  Sum_probs=78.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHhccccchhhh
Q psy13410        403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKS------FWQFALCRFFVGLSFDNCFTM  476 (493)
Q Consensus       403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~  476 (493)
                      .+.+++.+...++.++|.++.|+++||+|||+.+.++.++..++.++..++.+      ...+++++++.|++.++..+.
T Consensus        56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  135 (502)
T TIGR00887        56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPL  135 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHH
Confidence            35678899999999999999999999999999999999888888887777654      677889999999999999999


Q ss_pred             HhhhhhcccCCCCc
Q psy13410        477 MYILETNRKPFPGC  490 (493)
Q Consensus       477 ~~~~~~e~~p~~~~  490 (493)
                      .++|++|.+|++-|
T Consensus       136 ~~~~~~e~~p~~~R  149 (502)
T TIGR00887       136 SAIITSEFATKKWR  149 (502)
T ss_pred             HHHHHHHhcChhhH
Confidence            99999999998755

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.44  E-value=9.8e-07  Score=87.19  Aligned_cols=90  Identities=19%  Similarity=0.292  Sum_probs=85.6

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChh-HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVP-ALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI  144 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~-~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~  144 (493)
                      +..+.+++.+...++..++.+++|+++||+|||+ .+..+.++..++.++..+.++.+.+++..++.|++.+...+....
T Consensus       209 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  288 (352)
T cd06174         209 SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT  288 (352)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHH
Confidence            6677899999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCc
Q psy13410        145 LGMPIYKTRNL  155 (493)
Q Consensus       145 ~i~e~~~~~~R  155 (493)
                      ++.|..|+++|
T Consensus       289 ~~~~~~~~~~~  299 (352)
T cd06174         289 LASELAPPEAR  299 (352)
T ss_pred             HHHhhcCHHHH
Confidence            99999998766

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.43  E-value=1.6e-06  Score=88.12  Aligned_cols=87  Identities=17%  Similarity=0.264  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccc
Q psy13410         70 STWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPI  149 (493)
Q Consensus        70 ~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~  149 (493)
                      .++..+.+.++..++.++.|++.||+|||+.+..+.++..++.++.++.++.+.+++.+++.|++.+..++.....+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  330 (399)
T PRK05122        251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKR  330 (399)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            45667788899999999999999999999999999999999888888889999999999999999999898888888899


Q ss_pred             ccccCcc
Q psy13410        150 YKTRNLD  156 (493)
Q Consensus       150 ~~~~~R~  156 (493)
                      +|+++|+
T Consensus       331 ~~~~~~g  337 (399)
T PRK05122        331 VPPQNRG  337 (399)
T ss_pred             CCHHHHH
Confidence            9987663

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.43  E-value=2.8e-06  Score=87.36  Aligned_cols=85  Identities=21%  Similarity=0.224  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhccccchhhhH
Q psy13410        406 TWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFW--------QFALCRFFVGLSFDNCFTMM  477 (493)
Q Consensus       406 ~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~  477 (493)
                      +.+.....++..+|++++|+++||+|||+.+..+.++.+++.++.++.+++.        .+++++++.|++.++.++..
T Consensus        66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~  145 (432)
T PRK10406         66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTS  145 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhH
Confidence            3444555666779999999999999999999999999999999888877643        57789999999999999999


Q ss_pred             hhhhhcccCCCCc
Q psy13410        478 YILETNRKPFPGC  490 (493)
Q Consensus       478 ~~~~~e~~p~~~~  490 (493)
                      .+++.|.+|++.|
T Consensus       146 ~~~i~e~~p~~~r  158 (432)
T PRK10406        146 ATYMSEVAVEGRK  158 (432)
T ss_pred             HHHHHHhCCCCcc
Confidence            9999999997654

>KOG0254|consensus

Probab=98.41  E-value=6.6e-07  Score=94.16  Aligned_cols=87  Identities=23%  Similarity=0.356  Sum_probs=82.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN  483 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  483 (493)
                      +.+++.+...+++.+|.++.|+++|++|||+.+.++.++..++.++.++++++..+.+++++.|+|.|+...+.+.|.+|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCc
Q psy13410        484 RKPFPGC  490 (493)
Q Consensus       484 ~~p~~~~  490 (493)
                      +.|++-|
T Consensus       170 iap~~~R  176 (513)
T KOG0254|consen  170 IAPAHIR  176 (513)
T ss_pred             cCChhhh
Confidence            9997543

>KOG2816|consensus

Probab=98.35  E-value=4.3e-05  Score=78.41  Aligned_cols=100  Identities=17%  Similarity=0.293  Sum_probs=70.7

Q ss_pred             HHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc--ccchhhhhhhhccccccccC
Q psy13410         77 FFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLS--FDNCFTMMYILGMPIYKTRN  154 (493)
Q Consensus        77 ~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~--~g~~~~~~~~~i~e~~~~~~  154 (493)
                      ..+...+.++..|.++||+|||..+.+......+..+...+.. +|.++    +.|+.  .+.......+|++|....++
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~  145 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE  145 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhH
Confidence            3677788999999999999999999999999999999888877 33333    54443  34566778889999999987


Q ss_pred             ccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q psy13410        155 LDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVY  189 (493)
Q Consensus       155 R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~w  189 (493)
                      |..        ..|...+.+..+..++.......+
T Consensus       146 R~~--------~~gll~~~~~~~~~~~p~~~~~~~  172 (463)
T KOG2816|consen  146 RSS--------SIGLLSGTFGAGLVIGPALGGYLV  172 (463)
T ss_pred             HHH--------HHHHHHHHHHHHHhHHHHHHHHHH
Confidence            733        223333434444445544444443

>PRK12382 putative transporter; Provisional

Probab=98.35  E-value=2.5e-06  Score=86.47  Aligned_cols=86  Identities=16%  Similarity=0.245  Sum_probs=77.2

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccc
Q psy13410         70 STWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPI  149 (493)
Q Consensus        70 ~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~  149 (493)
                      .++..+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++.+.+++.+++.|++.+...+...+.+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  330 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR  330 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            45666778888899999999999999999999999999999988888889999999999999999998888888899999


Q ss_pred             ccccCc
Q psy13410        150 YKTRNL  155 (493)
Q Consensus       150 ~~~~~R  155 (493)
                      +|+++|
T Consensus       331 ~~~~~~  336 (392)
T PRK12382        331 VPSQVR  336 (392)
T ss_pred             cCHHHH
Confidence            998766

>PRK03699 putative transporter; Provisional

Probab=98.33  E-value=4.2e-06  Score=84.95  Aligned_cols=89  Identities=12%  Similarity=0.124  Sum_probs=79.9

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++..+.++...+++.+++.|++.+...+....++
T Consensus        41 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i  120 (394)
T PRK03699         41 VSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLI  120 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHh
Confidence            44788888999999999999999999999999999999999899888888888998888999999999888888889999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|+|.+
T Consensus       121 ~~~~~~~~r  129 (394)
T PRK03699        121 THVYEGKQR  129 (394)
T ss_pred             hhhcccchH
Confidence            999987544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.33  E-value=4.1e-06  Score=85.21  Aligned_cols=87  Identities=15%  Similarity=0.170  Sum_probs=77.3

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccc
Q psy13410         70 STWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPI  149 (493)
Q Consensus        70 ~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~  149 (493)
                      .+.+.+++.++..++.+++|+++||+|||+.+..+.++..++.+..++.++.+.+++.+++.|++.|...+...+++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45666777888899999999999999999999999998888888888888999999999999999999999999999888


Q ss_pred             ccccCcc
Q psy13410        150 YKTRNLD  156 (493)
Q Consensus       150 ~~~~~R~  156 (493)
                      .++++|+
T Consensus       340 ~~~~~~g  346 (408)
T PRK09874        340 SSNQIAG  346 (408)
T ss_pred             CCcccce
Confidence            8887663

>TIGR00895 2A0115 benzoate transport

Probab=98.32  E-value=5.1e-06  Score=83.83  Aligned_cols=88  Identities=24%  Similarity=0.322  Sum_probs=79.8

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.+++.++..++.+++.++.|+++||+|||+.+..+.++.+++.++..+.++...+++..++.|++.+...+...+++
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  130 (398)
T TIGR00895        51 PVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALV  130 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHH
Confidence            34678888999999999999999999999999999999998888888888888999888999999999999999999999


Q ss_pred             hcccCCCC
Q psy13410        482 TNRKPFPG  489 (493)
Q Consensus       482 ~e~~p~~~  489 (493)
                      .|.+|++.
T Consensus       131 ~~~~~~~~  138 (398)
T TIGR00895       131 SEYAPKRF  138 (398)
T ss_pred             HHHcCHHh
Confidence            99998643

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.29  E-value=6e-06  Score=86.49  Aligned_cols=99  Identities=19%  Similarity=0.171  Sum_probs=74.6

Q ss_pred             ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHhhcc
Q psy13410         58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT--KSFWQFALCRFFVGLSF  135 (493)
Q Consensus        58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a--~s~~~l~~~R~l~Gi~~  135 (493)
                      ++++.   +..+.+++.+.+.++..+|.++.|+++||+|||+++..+.++..++.++....  .+.+.+.+..++.|+..
T Consensus       304 ~~~g~---~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (496)
T PRK03893        304 TDLGY---DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLG  380 (496)
T ss_pred             hhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence            45555   56778999999999999999999999999999999998887777666544433  34455556666655544


Q ss_pred             cchhhhhhhhccccccccCccccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      .+..+....++.|.+|+++|+...
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~g~~~  404 (496)
T PRK03893        381 QGISGLLPKLIGGYFDTEQRAAGL  404 (496)
T ss_pred             cccchhhHHHHHhhCCHHHhhccc
Confidence            455667778899999998774443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.29  E-value=4.7e-06  Score=84.85  Aligned_cols=92  Identities=22%  Similarity=0.203  Sum_probs=81.1

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL  145 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~  145 (493)
                      +..+.+++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.++..+...++
T Consensus       253 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  332 (406)
T PRK11551        253 SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYAL  332 (406)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            55668889999999999999999999999999999998888777777777788888888888899999988889999999


Q ss_pred             ccccccccCccc
Q psy13410        146 GMPIYKTRNLDF  157 (493)
Q Consensus       146 i~e~~~~~~R~~  157 (493)
                      +.|.+|+++|+.
T Consensus       333 ~~~~~p~~~~g~  344 (406)
T PRK11551        333 APLFYPTQVRGT  344 (406)
T ss_pred             HHHHcchhhhhh
Confidence            999999987743

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.29  E-value=8.7e-06  Score=84.67  Aligned_cols=98  Identities=14%  Similarity=-0.024  Sum_probs=80.5

Q ss_pred             hhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHH
Q psy13410        390 TIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF-----TKSFWQFALCRF  464 (493)
Q Consensus       390 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~  464 (493)
                      .+..++++   +..+.+++.+.+.++..++.++.|+++||+|||+.+..+.++.++..+...+     +++...++++++
T Consensus        54 ~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  130 (467)
T PRK09556         54 DMISTYGL---STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWA  130 (467)
T ss_pred             HHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            33444444   3457899999999999999999999999999999998887777666655544     578889999999


Q ss_pred             HHhccccchhhhHhhhhhcccCCCCc
Q psy13410        465 FVGLSFDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       465 l~g~~~~~~~~~~~~~~~e~~p~~~~  490 (493)
                      +.|++.+...+....++.|.+|++.+
T Consensus       131 l~G~~~~~~~~~~~~~i~~~~~~~~r  156 (467)
T PRK09556        131 LSGFFQSTGGPCSYSTITRWTPRRKR  156 (467)
T ss_pred             HHHHHHhccchHHHHHHHHHcCccce
Confidence            99999988899999999999997543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.28  E-value=2.2e-06  Score=89.31  Aligned_cols=89  Identities=21%  Similarity=0.328  Sum_probs=76.5

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHhcc
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT------------KSFWQFALCRFFVGLS  469 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~l~g~~  469 (493)
                      ..+.+++.++..++..++.++.|+++||+|||++++++.++.+++.+...+.            ..+..+++++++.|++
T Consensus        54 ~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~  133 (479)
T PRK10077         54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG  133 (479)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhh
Confidence            4477899999999999999999999999999999999998888877766542            1245667899999999


Q ss_pred             ccchhhhHhhhhhcccCCCCc
Q psy13410        470 FDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       470 ~~~~~~~~~~~~~e~~p~~~~  490 (493)
                      .++..+...+++.|.+|++-|
T Consensus       134 ~g~~~~~~~~~i~e~~~~~~r  154 (479)
T PRK10077        134 VGLASMLSPMYIAEIAPAHIR  154 (479)
T ss_pred             HhHHhhHHHHHHHhhCChhhh
Confidence            999999999999999997644

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.26  E-value=2.8e-06  Score=86.23  Aligned_cols=98  Identities=7%  Similarity=-0.007  Sum_probs=88.4

Q ss_pred             cchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q psy13410        388 YTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVG  467 (493)
Q Consensus       388 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g  467 (493)
                      .+.+..++++   +..+.+++.+.+.++..++.++.|+++||+|||+++..+..+.+++.+...+++++..+++.+++.|
T Consensus        32 lp~i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~G  108 (393)
T PRK09705         32 LPQLRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGG  108 (393)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHH
Confidence            5566667775   3557999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhHhhhhhcccCCC
Q psy13410        468 LSFDNCFTMMYILETNRKPFP  488 (493)
Q Consensus       468 ~~~~~~~~~~~~~~~e~~p~~  488 (493)
                      ++.+...+....++.|.+|+|
T Consensus       109 ig~~~~~~~~~~~~~~~~~~~  129 (393)
T PRK09705        109 VGIGIIQAVMPSVIKRRFQQR  129 (393)
T ss_pred             hHHHHHhhhhhHHHHHHcccc
Confidence            999988888889999998754

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.26  E-value=2.1e-06  Score=85.89  Aligned_cols=89  Identities=17%  Similarity=0.066  Sum_probs=82.1

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+++.+++.|++.+...+...+++
T Consensus        29 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  108 (379)
T TIGR00881        29 KTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTV  108 (379)
T ss_pred             HhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|++.+
T Consensus       109 ~~~~~~~~r  117 (379)
T TIGR00881       109 TKWFSRSER  117 (379)
T ss_pred             HHhcCHhhh
Confidence            999997543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.26  E-value=9.2e-06  Score=82.51  Aligned_cols=89  Identities=15%  Similarity=0.146  Sum_probs=81.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.++..++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+++++++.|++.+...+....++
T Consensus        54 ~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i  133 (394)
T PRK10213         54 EGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLT  133 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34678888899999999999999999999999999999999999988888889999999999999999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|+|.+
T Consensus       134 ~~~~~~~~~  142 (394)
T PRK10213        134 MRLVPPRTV  142 (394)
T ss_pred             HHHcCHhHH
Confidence            999987643

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.25  E-value=8.3e-06  Score=82.11  Aligned_cols=89  Identities=18%  Similarity=0.279  Sum_probs=81.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.+...+.++...+.+.+++.|++.+...+....++
T Consensus        39 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  118 (385)
T TIGR00710        39 ASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALV  118 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence            44789999999999999999999999999999999999999999998888889999999999999999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|++.+
T Consensus       119 ~~~~~~~~~  127 (385)
T TIGR00710       119 RDIYPGEEL  127 (385)
T ss_pred             HHhcCcHHH
Confidence            999997643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.24  E-value=7.8e-06  Score=84.17  Aligned_cols=87  Identities=18%  Similarity=0.158  Sum_probs=79.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.+++.+...++..++.++.|+++||+|||+.+.++.++.+++.++..+.++.+.+.+..++.|++.+..++....++
T Consensus        57 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~  136 (434)
T PRK11663         57 RSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLL  136 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            34788999999999999999999999999999999999999999999888899998888888889998888889999999


Q ss_pred             hcccCCC
Q psy13410        482 TNRKPFP  488 (493)
Q Consensus       482 ~e~~p~~  488 (493)
                      .|.+|++
T Consensus       137 ~~~~~~~  143 (434)
T PRK11663        137 TAWYSRT  143 (434)
T ss_pred             HHhCCHH
Confidence            9999964

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.23  E-value=2.3e-05  Score=81.66  Aligned_cols=86  Identities=17%  Similarity=0.087  Sum_probs=72.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhh
Q psy13410        403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILET  482 (493)
Q Consensus       403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  482 (493)
                      .+.+++.+.+.++..++.++.|+++||+|||+.+..+.++.+++.++..+.++...+.+++++.|++.+.. .....++.
T Consensus        71 ~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~  149 (476)
T PLN00028         71 SDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMS  149 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence            36777888889999999999999999999999999998888888888888889888888889999887654 34566889


Q ss_pred             cccCCCC
Q psy13410        483 NRKPFPG  489 (493)
Q Consensus       483 e~~p~~~  489 (493)
                      |.+|+|-
T Consensus       150 ~~~~~~~  156 (476)
T PLN00028        150 TMFNGKI  156 (476)
T ss_pred             HhcChhh
Confidence            9999653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.23  E-value=1e-05  Score=83.64  Aligned_cols=117  Identities=21%  Similarity=0.286  Sum_probs=98.6

Q ss_pred             cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCCh--hHHHHHHHHHHHHHHHHHh--------cccHHHHHH
Q psy13410         57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRV--PALVLTNLVGFIFGVITAF--------TKSFWQFAL  126 (493)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr--~~l~~~~~~~~i~~~~~a~--------a~s~~~l~~  126 (493)
                      .++++.   +..+...+.-+..+...+|++++|++.||+|.|  ++++.+++++.+..+...+        .++-+.+.+
T Consensus       309 ~~~lg~---s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~  385 (477)
T PF11700_consen  309 TEVLGM---STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWV  385 (477)
T ss_pred             HHhcCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHH
Confidence            446666   555667777778899999999999999999999  8999999999887777777        788899999


Q ss_pred             HHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410        127 CRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV  188 (493)
Q Consensus       127 ~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~  188 (493)
                      .-++.|+..|+.++..-++.+|+.|++            ..+.+++++...+-..+.+++.+
T Consensus       386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g------------~e~efFgly~i~gk~ss~lGPll  435 (477)
T PF11700_consen  386 LAVLIGLFMGGIQSASRSLFSRLIPPG------------REAEFFGLYAITGKASSWLGPLL  435 (477)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCc------------hhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999995            55668888877776666666655

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.23  E-value=3.9e-06  Score=85.02  Aligned_cols=100  Identities=12%  Similarity=0.080  Sum_probs=86.8

Q ss_pred             cchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q psy13410        388 YTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVG  467 (493)
Q Consensus       388 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g  467 (493)
                      .+.+..++++   +..+.++..+.+.++..++.++.|+++||+|||+++..+.++.+++.+...++++++.+.+++++.|
T Consensus        32 ~~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G  108 (390)
T PRK03545         32 LSDIAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIA  108 (390)
T ss_pred             hHHHHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3455556665   3558899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhHhhhhhcccCCCCc
Q psy13410        468 LSFDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       468 ~~~~~~~~~~~~~~~e~~p~~~~  490 (493)
                      ++.+...+...+++.|.+|++.|
T Consensus       109 ~~~~~~~~~~~~~i~~~~~~~~r  131 (390)
T PRK03545        109 FAHAIFWSITASLAIRVAPAGKK  131 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCChhhh
Confidence            99887888889999999986544

>PRK09952 shikimate transporter; Provisional

Probab=98.22  E-value=4.2e-06  Score=86.27  Aligned_cols=81  Identities=25%  Similarity=0.271  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhccccchhhhHhhhh
Q psy13410        410 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFW--------QFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       410 ~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      .+..++..+|+++.|+++||+|||+.+..+.++.+++.++.++++++.        .+++++++.|++.++.++....++
T Consensus        71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~  150 (438)
T PRK09952         71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA  150 (438)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence            345566788999999999999999999999999999999999988876        477889999999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|+|.|
T Consensus       151 ~e~~p~~~r  159 (438)
T PRK09952        151 VESAPKNKK  159 (438)
T ss_pred             HHhCCCCCC
Confidence            999997655

>KOG3098|consensus

Probab=98.20  E-value=0.00034  Score=71.01  Aligned_cols=81  Identities=15%  Similarity=0.038  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccccccc
Q psy13410         74 QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTR  153 (493)
Q Consensus        74 ~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~  153 (493)
                      .++-+....+++++.+++.|+.|.|+.+.++...+....+..-+- |-+-+++.-.+.|+|.+..+...-.|++|...++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            788889999999999999999999999999999988887655544 5677889999999999999999999999999987


Q ss_pred             Cc
Q psy13410        154 NL  155 (493)
Q Consensus       154 ~R  155 (493)
                      .+
T Consensus       135 ti  136 (461)
T KOG3098|consen  135 TI  136 (461)
T ss_pred             hH
Confidence            44

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.20  E-value=2.4e-06  Score=85.81  Aligned_cols=88  Identities=20%  Similarity=0.343  Sum_probs=81.4

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+.+++++.|++.+...+....++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  107 (399)
T TIGR00893        28 AAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIV  107 (399)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            45789999999999999999999999999999999999999999988888889999999999999999999999999999


Q ss_pred             hcccCCCC
Q psy13410        482 TNRKPFPG  489 (493)
Q Consensus       482 ~e~~p~~~  489 (493)
                      .|.+|++.
T Consensus       108 ~~~~~~~~  115 (399)
T TIGR00893       108 ASWFPASE  115 (399)
T ss_pred             HHhCCHHH
Confidence            99999653

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.20  E-value=9.2e-06  Score=85.17  Aligned_cols=88  Identities=16%  Similarity=0.153  Sum_probs=77.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhh
Q psy13410        403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILET  482 (493)
Q Consensus       403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  482 (493)
                      ....|+.....++..++..+.|.++|.||||+.++.+.++..++.++.+-+++...++.+..+.|++.+... .....++
T Consensus        78 ~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~is  156 (599)
T PF06609_consen   78 DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAIS  156 (599)
T ss_pred             ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHH
Confidence            356677777888999999999999999999999999999999999999999999999999999999965554 5566689


Q ss_pred             cccCCCCcc
Q psy13410        483 NRKPFPGCF  491 (493)
Q Consensus       483 e~~p~~~~~  491 (493)
                      |..|.|.|.
T Consensus       157 El~p~k~R~  165 (599)
T PF06609_consen  157 ELVPNKWRG  165 (599)
T ss_pred             Hhcccchhh
Confidence            999998774

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.19  E-value=6.9e-06  Score=84.05  Aligned_cols=94  Identities=18%  Similarity=0.151  Sum_probs=82.3

Q ss_pred             ccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchh
Q psy13410         60 LNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCF  139 (493)
Q Consensus        60 ~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~  139 (493)
                      .+.   +....+++.+...++..++.++.+++.||.++|+.+..+.++.+++.++.++.++...++++.++.|++.+...
T Consensus       254 ~g~---~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  330 (417)
T PRK10489        254 WQM---GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISS  330 (417)
T ss_pred             cCC---ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            554   55678899999999999999999999999888888888888888888888888998888899999999988888


Q ss_pred             hhhhhhccccccccCcc
Q psy13410        140 TMMYILGMPIYKTRNLD  156 (493)
Q Consensus       140 ~~~~~~i~e~~~~~~R~  156 (493)
                      +...+++.|..|++.|+
T Consensus       331 ~~~~~~~~~~~p~~~~g  347 (417)
T PRK10489        331 LLQYTLLQTQTPDEMLG  347 (417)
T ss_pred             HHHHHHHHhhCCHHHHH
Confidence            88889999999987663

>PRK10133 L-fucose transporter; Provisional

Probab=98.19  E-value=1.8e-05  Score=81.56  Aligned_cols=88  Identities=11%  Similarity=0.080  Sum_probs=78.4

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhccccchhhhHh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVT---AFTKSFWQFALCRFFVGLSFDNCFTMMY  478 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~  478 (493)
                      ..+.++....+.++..++.++.|+++||+|||+++..+.++.+++.++.   .+++++..+++++++.|++.+...+...
T Consensus        60 ~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~  139 (438)
T PRK10133         60 NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAAN  139 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4578999999999999999999999999999999999999998888765   3577899999999999999999999999


Q ss_pred             hhhhcccCCCC
Q psy13410        479 ILETNRKPFPG  489 (493)
Q Consensus       479 ~~~~e~~p~~~  489 (493)
                      .++.|..|.+.
T Consensus       140 ~~v~~~~~~~~  150 (438)
T PRK10133        140 PFVTVLGPESS  150 (438)
T ss_pred             HHHHHhCChhh
Confidence            99998876543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.18  E-value=1.2e-05  Score=79.23  Aligned_cols=117  Identities=17%  Similarity=0.225  Sum_probs=100.1

Q ss_pred             cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhccc
Q psy13410         57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFD  136 (493)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g  136 (493)
                      ..++|+   ++.+..+..-...+..+.|++++|+|.||+|-|+++..++++..+.++..-+...-..+.++-.+.|...|
T Consensus       280 ~~~~gl---s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G  356 (438)
T COG2270         280 AADLGL---SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLG  356 (438)
T ss_pred             HHHcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Confidence            346777   77778888888999999999999999999999999999999999999999998887788888899999999


Q ss_pred             chhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410        137 NCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV  188 (493)
Q Consensus       137 ~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~  188 (493)
                      +.++.+-+|.++..|++            +-+.+++++...+-..+..+++.
T Consensus       357 ~~qA~SRSy~~~lvp~~------------k~~~fFglyaltgra~S~~gp~l  396 (438)
T COG2270         357 GAQASSRSYLARLVPKG------------KEGRFFGLYALTGRAASFLGPFL  396 (438)
T ss_pred             hHHHHHHHHHHHhCCCc------------cccceeehhhhhhhHHHHHHHHH
Confidence            99999999999999996            55556777766665555555554

>KOG0569|consensus

Probab=98.18  E-value=6.1e-06  Score=84.27  Aligned_cols=87  Identities=30%  Similarity=0.459  Sum_probs=76.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHhccccchhhhHhhh
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF---TKSFWQFALCRFFVGLSFDNCFTMMYIL  480 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~  480 (493)
                      .-+.+.+++.+|+++|+++.++++||+|||..+.+..++..++.++..+   .++...+++++++.|...+......+.|
T Consensus        61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmy  140 (485)
T KOG0569|consen   61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMY  140 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            4567889999999999999999999999999999888887777766665   4678889999999999999999999999


Q ss_pred             hhcccCCCCc
Q psy13410        481 ETNRKPFPGC  490 (493)
Q Consensus       481 ~~e~~p~~~~  490 (493)
                      +.|+.|.+-|
T Consensus       141 l~E~sP~~~R  150 (485)
T KOG0569|consen  141 LTEISPKNLR  150 (485)
T ss_pred             HhhcChhhhc
Confidence            9999997544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.17  E-value=1.3e-07  Score=97.66  Aligned_cols=88  Identities=35%  Similarity=0.691  Sum_probs=82.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHhccccchhhhHhh
Q psy13410        403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK---SFWQFALCRFFVGLSFDNCFTMMYI  479 (493)
Q Consensus       403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~  479 (493)
                      .+.++..+...+|.++|++++|+++||+|||+.+.++.++..++.++..+++   +...+.+++++.|++.++..+....
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4678889999999999999999999999999999999999999999999998   9999999999999999999999999


Q ss_pred             hhhcccCCCCc
Q psy13410        480 LETNRKPFPGC  490 (493)
Q Consensus       480 ~~~e~~p~~~~  490 (493)
                      |+.|..|++-|
T Consensus       126 ~~~E~~~~~~R  136 (451)
T PF00083_consen  126 YISEIAPPKHR  136 (451)
T ss_pred             ccccccccccc
Confidence            99999997654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.17  E-value=1.6e-05  Score=80.91  Aligned_cols=89  Identities=17%  Similarity=0.212  Sum_probs=78.9

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.++......++..++.++.|+++||+|||+.+..+.++.+++.+...+.++.+.+.+.+++.|++.+...+..+.++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i  126 (406)
T PRK15402         47 AEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAI  126 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHH
Confidence            34678888899999999999999999999999999999988888888888888998888899999998887788889999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|++.+
T Consensus       127 ~~~~~~~~~  135 (406)
T PRK15402        127 QESFEEADA  135 (406)
T ss_pred             HHHhChhHH
Confidence            999997643

>KOG2615|consensus

Probab=98.16  E-value=8.3e-06  Score=79.05  Aligned_cols=88  Identities=17%  Similarity=0.240  Sum_probs=79.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhh
Q psy13410        403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILET  482 (493)
Q Consensus       403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  482 (493)
                      ...|++-..+.++.++.+...|.++||+|||+++.++.+..+++..+.+.+.++..+++.+++.|... +..++.-++++
T Consensus        68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~k-gnl~v~rAiis  146 (451)
T KOG2615|consen   68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFK-GNLSVIRAIIS  146 (451)
T ss_pred             hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999977777899999987 56788899999


Q ss_pred             cccCCCCcc
Q psy13410        483 NRKPFPGCF  491 (493)
Q Consensus       483 e~~p~~~~~  491 (493)
                      |++++|-+.
T Consensus       147 dV~sek~r~  155 (451)
T KOG2615|consen  147 DVVSEKYRP  155 (451)
T ss_pred             hhcChhhcc
Confidence            999986553

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.15  E-value=6.4e-06  Score=81.61  Aligned_cols=89  Identities=22%  Similarity=0.343  Sum_probs=78.0

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++..++++.+.+++..++.|++.+...+....++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i  110 (352)
T PF07690_consen   31 PSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALI  110 (352)
T ss_dssp             SHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccc
Confidence            44788999999999999999999999999999999999999888866665657777888999999999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|++.+
T Consensus       111 ~~~~~~~~~  119 (352)
T PF07690_consen  111 ADWFPPEER  119 (352)
T ss_dssp             HHCCCTCCH
T ss_pred             cccchhhhh
Confidence            999998644

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0252|consensus

Probab=98.15  E-value=5.9e-06  Score=81.90  Aligned_cols=87  Identities=18%  Similarity=0.400  Sum_probs=75.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHhccccchhhh
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK-------SFWQFALCRFFVGLSFDNCFTM  476 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~l~g~~~~~~~~~  476 (493)
                      ..+.+.++..+|.++|+++.||+.||+|||++....++++.++.++.+++.       -+..+...++++|+|.|+-+|.
T Consensus        85 i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPl  164 (538)
T KOG0252|consen   85 VLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPL  164 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcc
Confidence            567888999999999999999999999999999999999999988766632       2456778899999999999999


Q ss_pred             HhhhhhcccCCCCc
Q psy13410        477 MYILETNRKPFPGC  490 (493)
Q Consensus       477 ~~~~~~e~~p~~~~  490 (493)
                      .-+.++|...++.|
T Consensus       165 SAtI~SE~an~~~R  178 (538)
T KOG0252|consen  165 SATIMSESANKKTR  178 (538)
T ss_pred             hHHHhhhhhhhccc
Confidence            99999999886544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.15  E-value=7.8e-06  Score=84.53  Aligned_cols=89  Identities=21%  Similarity=0.399  Sum_probs=77.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHhccccchhhhHh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK---SFWQFALCRFFVGLSFDNCFTMMY  478 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~  478 (493)
                      ..+.+++.+++.++..++.++.|+++||+|||+.+..+.++..++.++..+..   +.+.+++++++.|++.+...+...
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  149 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP  149 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence            44789999999999999999999999999999999999988888877775533   445788899999999999999999


Q ss_pred             hhhhcccCCCCc
Q psy13410        479 ILETNRKPFPGC  490 (493)
Q Consensus       479 ~~~~e~~p~~~~  490 (493)
                      .++.|.+|++-|
T Consensus       150 ~~i~~~~~~~~r  161 (481)
T TIGR00879       150 MYLSEIAPKALR  161 (481)
T ss_pred             HHHHccCChhhh
Confidence            999999997644

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.13  E-value=7.7e-06  Score=81.45  Aligned_cols=90  Identities=21%  Similarity=0.235  Sum_probs=81.7

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHhhcccchhhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS-FWQFALCRFFVGLSFDNCFTMMYI  144 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s-~~~l~~~R~l~Gi~~g~~~~~~~~  144 (493)
                      +..+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++.++.++.++ ++.+++..++.|++.+...+...+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  324 (365)
T TIGR00900       245 GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGT  324 (365)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667889999999999999999999999999999999998888888888888875 888999999999999999999999


Q ss_pred             hccccccccCc
Q psy13410        145 LGMPIYKTRNL  155 (493)
Q Consensus       145 ~i~e~~~~~~R  155 (493)
                      ++.|..|+++|
T Consensus       325 ~~~~~~~~~~~  335 (365)
T TIGR00900       325 LLQRRVPAELL  335 (365)
T ss_pred             HHHHhCCHHHH
Confidence            99999998755

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.13  E-value=1.1e-05  Score=81.08  Aligned_cols=99  Identities=15%  Similarity=0.115  Sum_probs=77.6

Q ss_pred             ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHH--HHHHh--cccHHHHHHHHHHHhh
Q psy13410         58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG--VITAF--TKSFWQFALCRFFVGL  133 (493)
Q Consensus        58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~--~~~a~--a~s~~~l~~~R~l~Gi  133 (493)
                      ++++.   +..+.+++.+...++..++.++.|+++||+|||+.+.....+..+..  ++..+  .++.+.+++..++.|+
T Consensus       248 ~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  324 (394)
T TIGR00883       248 QTLGL---SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLAL  324 (394)
T ss_pred             HhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            44554   55668888889999999999999999999999998886665554443  22222  2567778888999999


Q ss_pred             cccchhhhhhhhccccccccCccccc
Q psy13410        134 SFDNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       134 ~~g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      +.+...+...+++.|.+|++.|+.+.
T Consensus       325 ~~~~~~~~~~~~~~~~~p~~~~~~~~  350 (394)
T TIGR00883       325 IGGMYTGPMGSFLPELFPTEVRYTGA  350 (394)
T ss_pred             HHHHHhhhHHHHHHHhCCccceeeEe
Confidence            99999999999999999998885433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.13  E-value=5.2e-06  Score=86.58  Aligned_cols=89  Identities=12%  Similarity=0.211  Sum_probs=81.7

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.+++.....++..++.++.|+++||+|||+.+..+.++.+++.++..+.++...+++++++.|++.+...+...+++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i  115 (485)
T TIGR00711        36 LSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTL  115 (485)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|++.+
T Consensus       116 ~~~~~~~~r  124 (485)
T TIGR00711       116 LNIYPPEKR  124 (485)
T ss_pred             HHHCCHHHH
Confidence            999996543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG1330|consensus

Probab=98.12  E-value=3.6e-06  Score=83.59  Aligned_cols=89  Identities=24%  Similarity=0.396  Sum_probs=84.0

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      +...|+++.++.+...+.++++|+++||+.||+++..|..+-.++.++.+++.+++++++++.+.|+|.+...++.++++
T Consensus        67 ~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~I  146 (493)
T KOG1330|consen   67 DSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLI  146 (493)
T ss_pred             chhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHh
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      +|.+|..-|
T Consensus       147 aD~f~~~~R  155 (493)
T KOG1330|consen  147 ADSFPDDKR  155 (493)
T ss_pred             hhcCcchhh
Confidence            999996543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.12  E-value=7.9e-06  Score=83.55  Aligned_cols=87  Identities=25%  Similarity=0.334  Sum_probs=77.8

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ....++..+++.++..++.++.|+++||+|||+++..+.++.+++.++..++++...+++++++.|++.+...+..+.++
T Consensus        50 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~  129 (413)
T PRK15403         50 VSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTV  129 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44678888999999999999999999999999999999999999999988999999999999999998876667778889


Q ss_pred             hcccCCC
Q psy13410        482 TNRKPFP  488 (493)
Q Consensus       482 ~e~~p~~  488 (493)
                      .|.+|++
T Consensus       130 ~~~~~~~  136 (413)
T PRK15403        130 QEAFGQT  136 (413)
T ss_pred             HHhcCHH
Confidence            9999864

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.12  E-value=3.2e-05  Score=79.45  Aligned_cols=86  Identities=14%  Similarity=0.176  Sum_probs=74.6

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410         67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT-KSFWQFALCRFFVGLSFDNCFTMMYIL  145 (493)
Q Consensus        67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a-~s~~~l~~~R~l~Gi~~g~~~~~~~~~  145 (493)
                      ....+++.++..++..++.+++++++||+|||+++..+.++..++.++..+. ++.+.+++..++.|++.+...+...++
T Consensus       256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  335 (437)
T TIGR00792       256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWAL  335 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456778888899999999999999999999999999999888888777765 466778888899999999999999999


Q ss_pred             ccccccc
Q psy13410        146 GMPIYKT  152 (493)
Q Consensus       146 i~e~~~~  152 (493)
                      ++|..+.
T Consensus       336 ~~~~~~~  342 (437)
T TIGR00792       336 VADTVDY  342 (437)
T ss_pred             Hhhhhhh
Confidence            9998763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.11  E-value=3.6e-05  Score=79.23  Aligned_cols=77  Identities=19%  Similarity=0.153  Sum_probs=66.7

Q ss_pred             HHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhccccchhhhHhhhhhccc
Q psy13410        414 CGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFW--------QFALCRFFVGLSFDNCFTMMYILETNRK  485 (493)
Q Consensus       414 i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~e~~  485 (493)
                      ++..+|.++.|+++||+|||+.++.+.++..++.++..++++..        .+++++++.|++.+...+....+++|.+
T Consensus        67 l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~  146 (434)
T PRK15075         67 LMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA  146 (434)
T ss_pred             HHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC
Confidence            33357889999999999999999999999999999999888765        3577899999999998998899999999


Q ss_pred             CCCCc
Q psy13410        486 PFPGC  490 (493)
Q Consensus       486 p~~~~  490 (493)
                      |++-|
T Consensus       147 p~~~r  151 (434)
T PRK15075        147 TPGRK  151 (434)
T ss_pred             Ccccc
Confidence            97644

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.11  E-value=2.1e-05  Score=79.53  Aligned_cols=94  Identities=7%  Similarity=-0.061  Sum_probs=85.9

Q ss_pred             ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccc
Q psy13410         58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDN  137 (493)
Q Consensus        58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~  137 (493)
                      +|.+.   +..+.+++.++..++..++.++++++.||+|+|+.+.++.+...+..++.+++++.+.+++.+++.|++.|.
T Consensus       233 ~~~g~---s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~  309 (382)
T TIGR00902       233 QAAGI---SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAV  309 (382)
T ss_pred             HHCCC---CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence            44565   667788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccccccccCc
Q psy13410        138 CFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       138 ~~~~~~~~i~e~~~~~~R  155 (493)
                      ..+....++.+. |+++|
T Consensus       310 ~~~~~~~~i~~~-~~~~~  326 (382)
T TIGR00902       310 CHLAAMRYIAAQ-PGSEI  326 (382)
T ss_pred             HHHHHHHHHHhC-CHhhH
Confidence            999999999987 77644

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.11  E-value=8.6e-06  Score=82.33  Aligned_cols=88  Identities=14%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++..++++++.+++.+++.|++.+...+....++
T Consensus        37 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~  116 (382)
T PRK10091         37 IPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVL  116 (382)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999888888888889


Q ss_pred             hcccCCCC
Q psy13410        482 TNRKPFPG  489 (493)
Q Consensus       482 ~e~~p~~~  489 (493)
                      .|.+|++.
T Consensus       117 ~~~~~~~~  124 (382)
T PRK10091        117 SKIIKPGK  124 (382)
T ss_pred             HHhCChHH
Confidence            99988743

>PRK10054 putative transporter; Provisional

Probab=98.11  E-value=1.2e-05  Score=81.61  Aligned_cols=88  Identities=14%  Similarity=0.077  Sum_probs=75.1

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.++..++..++.+++.++.|+++||+|||+.+..+.++.+++.+...+.++.+..+++.++.|.+.+...+....+.
T Consensus        42 ~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  121 (395)
T PRK10054         42 VDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWF  121 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999988888888888888888777777777777666677888999


Q ss_pred             hcccCCCC
Q psy13410        482 TNRKPFPG  489 (493)
Q Consensus       482 ~e~~p~~~  489 (493)
                      .|.+|++.
T Consensus       122 ~~~~~~~~  129 (395)
T PRK10054        122 ADNLSSTS  129 (395)
T ss_pred             HHhcCHhH
Confidence            99988653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.09  E-value=1e-05  Score=80.86  Aligned_cols=88  Identities=18%  Similarity=0.140  Sum_probs=77.4

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhccccchhhhHhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK-SFWQFALCRFFVGLSFDNCFTMMYIL  480 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~  480 (493)
                      ..+.+++..+..++..++.++.|+++||+|||+.+..+.++.+++.++..+.+ +.+.+++.+++.|++. +..+....+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~  114 (366)
T TIGR00886        36 TAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAG-GSFASCMPW  114 (366)
T ss_pred             HHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-hhhHhHHHH
Confidence            44788999999999999999999999999999999999999999999988888 8998888999999884 456677889


Q ss_pred             hhcccCCCCc
Q psy13410        481 ETNRKPFPGC  490 (493)
Q Consensus       481 ~~e~~p~~~~  490 (493)
                      +.|.+|++.+
T Consensus       115 ~~~~~~~~~r  124 (366)
T TIGR00886       115 ISFFFPKKIQ  124 (366)
T ss_pred             HHHhcCHhhh
Confidence            9999986543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.09  E-value=3.1e-06  Score=71.48  Aligned_cols=80  Identities=19%  Similarity=0.266  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCCc
Q psy13410        411 FFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       411 ~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~  490 (493)
                      ...++.+++.++.|++.||+|||+.+..+..+..++.+...+.++.....+..++.|++.+...+....++.|.+|++.+
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER   85 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence            34788889999999999999999999999888888888887778888888888999999888889999999999997643

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.07  E-value=1e-05  Score=81.96  Aligned_cols=89  Identities=18%  Similarity=0.278  Sum_probs=79.5

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+...+.++...+.+.+++.|++.+...+..+.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i  116 (392)
T PRK10473         37 EAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAIL  116 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            44678889999999999999999999999999999999999888888888888888888889999999888888999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|++.+
T Consensus       117 ~~~~~~~~r  125 (392)
T PRK10473        117 RDTLDDRRR  125 (392)
T ss_pred             HHHcCHHHH
Confidence            999987654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.06  E-value=3.6e-05  Score=80.18  Aligned_cols=85  Identities=6%  Similarity=0.066  Sum_probs=69.6

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHhhcccchhhh
Q psy13410         67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF-----TKSFWQFALCRFFVGLSFDNCFTM  141 (493)
Q Consensus        67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~-----a~s~~~l~~~R~l~Gi~~g~~~~~  141 (493)
                      ....+++.++..++..++.+++++++||+|||+++.++.++..++.+...+     ..+.+.+++.-++.|++.+...+.
T Consensus       265 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~  344 (473)
T PRK10429        265 ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVL  344 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            344667777777889999999999999999999999888877766655432     345677778888999999999999


Q ss_pred             hhhhcccccc
Q psy13410        142 MYILGMPIYK  151 (493)
Q Consensus       142 ~~~~i~e~~~  151 (493)
                      ..++++|..+
T Consensus       345 ~~am~ad~id  354 (473)
T PRK10429        345 QVIMVADTVD  354 (473)
T ss_pred             HHHHHhhhhh
Confidence            9999999966

>PRK10504 putative transporter; Provisional

Probab=98.06  E-value=3.2e-05  Score=80.40  Aligned_cols=87  Identities=14%  Similarity=0.095  Sum_probs=77.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.+++.....++..++.++.|+++||+|||+.++.+.++.+++.+...+.++...+++++++.|++.+...+....++
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~  123 (471)
T PRK10504         44 PLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTV  123 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33667888888999999999999999999999999998888888888888888899999999999999999999999999


Q ss_pred             hcccCCC
Q psy13410        482 TNRKPFP  488 (493)
Q Consensus       482 ~e~~p~~  488 (493)
                      .|.+|++
T Consensus       124 ~~~~~~~  130 (471)
T PRK10504        124 MKIVPRE  130 (471)
T ss_pred             HHHcCHH
Confidence            9999865

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.06  E-value=1.3e-05  Score=80.56  Aligned_cols=99  Identities=7%  Similarity=-0.084  Sum_probs=75.0

Q ss_pred             cchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q psy13410        388 YTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVG  467 (493)
Q Consensus       388 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g  467 (493)
                      .+.+..++++.   ..+.+++.+.+.++..++.+..|+++||+|||+++.........+.+.....+++..+++++++.|
T Consensus        14 lp~i~~~~~~s---~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G   90 (368)
T TIGR00903        14 LSLVAEDIDVS---KEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA   90 (368)
T ss_pred             HHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            44566666663   557899999999999999999999999999998876555444444333333368899999999999


Q ss_pred             ccccchhhhHhhhhhcccCCCCc
Q psy13410        468 LSFDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       468 ~~~~~~~~~~~~~~~e~~p~~~~  490 (493)
                      ++.+. .......++|.+|+|.|
T Consensus        91 ~g~~~-~~~~~~~~~~~~~~~~r  112 (368)
T TIGR00903        91 LGQPF-LLNAFAPAASQIREERR  112 (368)
T ss_pred             hHhHH-HHHHHHHHHHHcCHHHH
Confidence            99875 55666667899997654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.05  E-value=7.8e-05  Score=76.42  Aligned_cols=86  Identities=13%  Similarity=0.061  Sum_probs=77.1

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHhccccchhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT-----KSFWQFALCRFFVGLSFDNCFTM  476 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~  476 (493)
                      ..+.+++.+++.++..++.+..|++.||+|.|+++.++.++..+..+...+.     +++..+++..++.|++ ++.++.
T Consensus        69 ~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~  147 (462)
T PRK15034         69 TDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFAS  147 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHH
Confidence            3478889999999999999999999999999999999999888888888876     7899999999999998 778899


Q ss_pred             HhhhhhcccCCC
Q psy13410        477 MYILETNRKPFP  488 (493)
Q Consensus       477 ~~~~~~e~~p~~  488 (493)
                      ....+++.+|+|
T Consensus       148 ~~~~vs~wfp~~  159 (462)
T PRK15034        148 SMGNISFFFPKA  159 (462)
T ss_pred             HHHHHHHHCCHh
Confidence            999999999965

>KOG0253|consensus

Probab=98.04  E-value=2e-05  Score=76.11  Aligned_cols=89  Identities=24%  Similarity=0.347  Sum_probs=81.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN  483 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  483 (493)
                      +..+++.....|..+|+...|.++|++|||+...+..+..++..++...++|+..+.++.++.|+|.++ .|...++-.|
T Consensus       114 q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle  192 (528)
T KOG0253|consen  114 QAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLE  192 (528)
T ss_pred             hhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHH
Confidence            567778888999999999999999999999999999999999999999999999999999999999988 8998999999


Q ss_pred             ccCCCCccCC
Q psy13410        484 RKPFPGCFQC  493 (493)
Q Consensus       484 ~~p~~~~~~~  493 (493)
                      ..|..++..|
T Consensus       193 ~lp~~~r~~~  202 (528)
T KOG0253|consen  193 FLPSSHRWLL  202 (528)
T ss_pred             hccCcCCCcc
Confidence            9998776543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.02  E-value=1.3e-05  Score=80.69  Aligned_cols=88  Identities=24%  Similarity=0.324  Sum_probs=80.5

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.++..++..++..++.++.|+++||+|||+.+..+.++.+++.+...+.++...+.+..++.|++.+...+....++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  104 (377)
T PRK11102         25 AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALM  104 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999988888998889999999999888888999999


Q ss_pred             hcccCCCC
Q psy13410        482 TNRKPFPG  489 (493)
Q Consensus       482 ~e~~p~~~  489 (493)
                      .|.+|++.
T Consensus       105 ~~~~~~~~  112 (377)
T PRK11102        105 RDMFPKEE  112 (377)
T ss_pred             HHhcCHHH
Confidence            99998764

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.00  E-value=4e-05  Score=77.37  Aligned_cols=87  Identities=20%  Similarity=0.242  Sum_probs=71.3

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL  145 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~  145 (493)
                      +....+++.+...++..++.++.|+++||+|||+++..+..+..++.+...  + ....+...++.|++.+...+.....
T Consensus       233 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~  309 (381)
T PRK03633        233 SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAW  309 (381)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            556678888999999999999999999999999999988888877665443  2 3344567888898888888999999


Q ss_pred             ccccccccCc
Q psy13410        146 GMPIYKTRNL  155 (493)
Q Consensus       146 i~e~~~~~~R  155 (493)
                      +.|..|++++
T Consensus       310 ~~~~~~~~~~  319 (381)
T PRK03633        310 ACEKVEHHEL  319 (381)
T ss_pred             HHccCCHHHH
Confidence            9999988644

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.98  E-value=6.3e-05  Score=76.25  Aligned_cols=87  Identities=17%  Similarity=0.141  Sum_probs=76.4

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+...+.++...+++.+++.|++.+...+....+.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~  121 (394)
T PRK11652         42 EGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLP  121 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            44788899999999999999999999999999999999998888888888888899999999999998877777777888


Q ss_pred             hcccCCC
Q psy13410        482 TNRKPFP  488 (493)
Q Consensus       482 ~e~~p~~  488 (493)
                      .|.+|.+
T Consensus       122 ~~~~~~~  128 (394)
T PRK11652        122 RDLYEGT  128 (394)
T ss_pred             HHhcCHH
Confidence            8887754

>PRK11043 putative transporter; Provisional

Probab=97.97  E-value=2.6e-05  Score=79.25  Aligned_cols=87  Identities=21%  Similarity=0.298  Sum_probs=78.1

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.++..+++.++..++.++.|+++||+|||+.+..+.++..++.+...+.++.+.+.+.+++.|++.+...+....++
T Consensus        40 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~  119 (401)
T PRK11043         40 ASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALV  119 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999988888888888888999988899999998877777778889


Q ss_pred             hcccCCC
Q psy13410        482 TNRKPFP  488 (493)
Q Consensus       482 ~e~~p~~  488 (493)
                      .|.+|++
T Consensus       120 ~~~~~~~  126 (401)
T PRK11043        120 IDRYPAQ  126 (401)
T ss_pred             HHhcCcH
Confidence            9999875

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.95  E-value=8.2e-05  Score=75.71  Aligned_cols=88  Identities=19%  Similarity=0.046  Sum_probs=77.7

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ....|+..+...++..+..++.|+++||+|||+.+..+.++.+++.+...+.++.+.+.+..++.|++.+...+...+++
T Consensus        45 ~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~  124 (400)
T PRK11646         45 AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALV  124 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44788888888889888899999999999999999999999999999888888888888889999998877778889999


Q ss_pred             hcccCCCC
Q psy13410        482 TNRKPFPG  489 (493)
Q Consensus       482 ~e~~p~~~  489 (493)
                      .|.+|++.
T Consensus       125 ~~~~~~~~  132 (400)
T PRK11646        125 IKLIRPHQ  132 (400)
T ss_pred             HHhcCHHH
Confidence            99998643

>PRK09848 glucuronide transporter; Provisional

Probab=97.95  E-value=0.00013  Score=75.54  Aligned_cols=85  Identities=11%  Similarity=0.118  Sum_probs=71.1

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhhcccchhhhhhhhc
Q psy13410         69 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK--SFWQFALCRFFVGLSFDNCFTMMYILG  146 (493)
Q Consensus        69 ~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~--s~~~l~~~R~l~Gi~~g~~~~~~~~~i  146 (493)
                      ..++......++..++.+++++++||+|+|+++.++.++..++.++..+.+  +++.+++..++.|+|.+...+...+..
T Consensus       265 ~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~  344 (448)
T PRK09848        265 FTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALE  344 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445677888999999999999999999999999888888777754  677778888999999999999999999


Q ss_pred             ccccccc
Q psy13410        147 MPIYKTR  153 (493)
Q Consensus       147 ~e~~~~~  153 (493)
                      +|..+.+
T Consensus       345 ~~~~~~~  351 (448)
T PRK09848        345 ADTVEYG  351 (448)
T ss_pred             HHhhhhh
Confidence            9998764

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.94  E-value=1.6e-05  Score=80.73  Aligned_cols=86  Identities=21%  Similarity=0.148  Sum_probs=73.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ....+++...+.++..+..+++|+++||+|||+++..+.++.+++.+.+.+..+.   ++.+++.|++.+...|+..+++
T Consensus        37 ~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i  113 (393)
T PRK11195         37 DWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGIL  113 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999998888777766665553   5677889999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|++.+
T Consensus       114 ~~~~~~~~~  122 (393)
T PRK11195        114 TELLPGEKL  122 (393)
T ss_pred             HHHcCHHHH
Confidence            999997643

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.94  E-value=8.6e-05  Score=69.59  Aligned_cols=110  Identities=18%  Similarity=0.172  Sum_probs=88.3

Q ss_pred             cccccCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc-----
Q psy13410         44 WVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT-----  118 (493)
Q Consensus        44 w~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a-----  118 (493)
                      -.|..+.|+. ++.+.+|.   ++.+.+.+.++-.+|..+| ++.|.+.|++|.|.+++++.+...+|-.+...+     
T Consensus        17 t~Y~Fs~yS~-~Lk~~l~~---sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i   91 (250)
T PF06813_consen   17 TTYTFSAYSP-QLKSRLGY---SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI   91 (250)
T ss_pred             cccchhhhhH-HHHHHhCC---CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            3455566522 27777887   7788888999999999875 889999999999999999999999988776643     


Q ss_pred             --ccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410        119 --KSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       119 --~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                        ++++.+.+..++.|.+.+...+++.....+.+|. +|+.+.
T Consensus        92 ~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vv  133 (250)
T PF06813_consen   92 PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVV  133 (250)
T ss_pred             CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCcee
Confidence              4788999999999999888888888888899984 564444

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.94  E-value=4.7e-05  Score=72.94  Aligned_cols=85  Identities=21%  Similarity=0.303  Sum_probs=77.7

Q ss_pred             chhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHhhcccchhhhhhhh
Q psy13410         68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS--FWQFALCRFFVGLSFDNCFTMMYIL  145 (493)
Q Consensus        68 ~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s--~~~l~~~R~l~Gi~~g~~~~~~~~~  145 (493)
                      ...+++.+.+.++..++.+++|.++||+|||+.+..+.....++.++.++..+  .+.+++.|+++|++.|...+....+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            45789999999999999999999999999999999888877777778888776  9999999999999999999999999


Q ss_pred             ccccccc
Q psy13410        146 GMPIYKT  152 (493)
Q Consensus       146 i~e~~~~  152 (493)
                      +.|++|+
T Consensus       119 ~~~~~~~  125 (338)
T COG0477         119 LSEWFPE  125 (338)
T ss_pred             HHHhcCc
Confidence            9999997

>TIGR00901 2A0125 AmpG-related permease

Probab=97.93  E-value=2.5e-05  Score=77.96  Aligned_cols=90  Identities=13%  Similarity=0.053  Sum_probs=74.6

Q ss_pred             ccchhhHHHHHHH-HHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHhh
Q psy13410         66 QDTLSTWAQAFFF-CGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT-----------KSFWQFALCRFFVGL  133 (493)
Q Consensus        66 ~~~~~~~~~s~~~-lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a-----------~s~~~l~~~R~l~Gi  133 (493)
                      +..+.+.+.++.. ++..+|.+++|+++||+|||+.+..+.++..++..+..+.           ++++.++...++.|+
T Consensus       242 ~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  321 (356)
T TIGR00901       242 SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAV  321 (356)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH
Confidence            5556676666554 6788999999999999999999999888888776655543           456778889999999


Q ss_pred             cccchhhhhhhhccccccccCc
Q psy13410        134 SFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       134 ~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      +.+...+...+++.|.+|+++|
T Consensus       322 ~~~~~~~~~~~~~~~~~p~~~~  343 (356)
T TIGR00901       322 TGGLGTVAFVAFLSKLSNPKFG  343 (356)
T ss_pred             HhHHHHHHHHHHHHHhcCCCcc
Confidence            9999999999999999999744

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.92  E-value=4.5e-05  Score=79.66  Aligned_cols=86  Identities=14%  Similarity=-0.070  Sum_probs=71.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhh-cCCchHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHhccccchhhhHhhhh
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVVTAFTKSFW-QFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      +.+++...+.....+..+++|+++|| +|||+++..+.++.+++.+.+.++.+.. .+++++++.|++.+...+...+++
T Consensus        51 ~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li  130 (489)
T PRK10207         51 QAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLL  130 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHH
Confidence            45667777777777777899999999 9999999999999999988888776533 344678888999998999999999


Q ss_pred             hcccCCCC
Q psy13410        482 TNRKPFPG  489 (493)
Q Consensus       482 ~e~~p~~~  489 (493)
                      .|.+|++.
T Consensus       131 ~~~~p~~~  138 (489)
T PRK10207        131 SKCYPPKD  138 (489)
T ss_pred             HHhcCCCc
Confidence            99998753

>KOG4332|consensus

Probab=97.92  E-value=0.00024  Score=65.74  Aligned_cols=83  Identities=18%  Similarity=0.105  Sum_probs=57.0

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh-h
Q psy13410         67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI-L  145 (493)
Q Consensus        67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~-~  145 (493)
                      +.+++.+.-.-+-...+.+.+.|-|+|+-|||+.-+.=++...+++ ++-.+|.|-.++++|.+.|++.+..++.-.+ +
T Consensus        71 kG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWl  149 (454)
T KOG4332|consen   71 KGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESWL  149 (454)
T ss_pred             CCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHHH
Confidence            3334433333344445666778889999999996554444444433 3456789999999999999999988887766 4


Q ss_pred             ccccc
Q psy13410        146 GMPIY  150 (493)
Q Consensus       146 i~e~~  150 (493)
                      +.|.-
T Consensus       150 iaEHn  154 (454)
T KOG4332|consen  150 IAEHN  154 (454)
T ss_pred             HHHhh
Confidence            55544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.91  E-value=3.5e-05  Score=80.23  Aligned_cols=87  Identities=10%  Similarity=-0.087  Sum_probs=78.1

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhh-cCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL  480 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  480 (493)
                      ..+.+++...+.++..++.+++|+++|| +|||+++.++.++.+++.+++.+.++...+.++.++.|++.+...+...++
T Consensus        47 ~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~  126 (475)
T TIGR00924        47 QEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSM  126 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHH
Confidence            4478899999999999999999999999 899999999999999998888888887777788888999998888999999


Q ss_pred             hhcccCCC
Q psy13410        481 ETNRKPFP  488 (493)
Q Consensus       481 ~~e~~p~~  488 (493)
                      ++|.+|++
T Consensus       127 ~a~~~~~~  134 (475)
T TIGR00924       127 VGKLYERG  134 (475)
T ss_pred             HHHhcCCC
Confidence            99999864

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.91  E-value=3.5e-05  Score=80.78  Aligned_cols=95  Identities=14%  Similarity=0.047  Sum_probs=82.2

Q ss_pred             cchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q psy13410        388 YTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVG  467 (493)
Q Consensus       388 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g  467 (493)
                      .+.+..+++.   +..+.+|+...+.++...+.++.|+++||+|||+.+..+.++.+++.+...++++.+.+++++++.|
T Consensus        29 ~p~i~~~l~~---s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G  105 (495)
T PRK14995         29 APTLSMTLGA---SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLA  105 (495)
T ss_pred             HHHHHHHhCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4566666664   2447889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhHhhhhhccc
Q psy13410        468 LSFDNCFTMMYILETNRK  485 (493)
Q Consensus       468 ~~~~~~~~~~~~~~~e~~  485 (493)
                      ++.+...+.....+.+.+
T Consensus       106 ~g~~~~~~~~~~~l~~~~  123 (495)
T PRK14995        106 IGAAMIVPATLAGIRATF  123 (495)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            998888887777776665

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.91  E-value=9.2e-05  Score=77.54  Aligned_cols=95  Identities=19%  Similarity=0.177  Sum_probs=87.2

Q ss_pred             ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccc
Q psy13410         58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDN  137 (493)
Q Consensus        58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~  137 (493)
                      ++++.   +....|++.+++.+|..+|+++.+.+.+|+++++.+..+.++++++.+..+++++.+..++.-++.|++...
T Consensus       247 ~~l~~---~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~  323 (524)
T PF05977_consen  247 DVLGG---GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWII  323 (524)
T ss_pred             HHhCC---cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            44554   567789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccccccccCc
Q psy13410        138 CFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       138 ~~~~~~~~i~e~~~~~~R  155 (493)
                      ..+...+.+.+..|++.|
T Consensus       324 ~~~~~~t~~Q~~~P~~~~  341 (524)
T PF05977_consen  324 ANSSLNTLVQLSVPDWVR  341 (524)
T ss_pred             HHHHHHHHHHHhCCHHHH
Confidence            999999999999999866

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.90  E-value=7.6e-05  Score=77.27  Aligned_cols=87  Identities=16%  Similarity=0.029  Sum_probs=65.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhc-CCchHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhccccchhhhHhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVVTAFTK-SFWQFALCRFFVGLSFDNCFTMMYI  479 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~  479 (493)
                      ..+++.+...+.+...++.+++|+++||+ |||+.+.++.++.+++.+++.... +.....++..+..++.+...+...+
T Consensus        44 ~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~a  123 (493)
T PRK15462         44 DNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSC  123 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHH
Confidence            33677788888888899999999999999 999999999998888876665432 2222334444455555556677788


Q ss_pred             hhhcccCCC
Q psy13410        480 LETNRKPFP  488 (493)
Q Consensus       480 ~~~e~~p~~  488 (493)
                      ++.|.+|++
T Consensus       124 lv~elfp~~  132 (493)
T PRK15462        124 LLGELYEPT  132 (493)
T ss_pred             HHHHHCCCC
Confidence            999999974

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.86  E-value=0.00013  Score=72.52  Aligned_cols=89  Identities=16%  Similarity=0.187  Sum_probs=84.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ...+|+..+++..+..+++++...+.||+.||++++....+..++.++..+++|+..+++++++.|+..+..+++..+++
T Consensus        47 ~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a  126 (394)
T COG2814          47 EGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALA  126 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      +++.|++-+
T Consensus       127 ~~lvpp~~~  135 (394)
T COG2814         127 ARLVPPGKR  135 (394)
T ss_pred             HHHcCccch
Confidence            999997544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.85  E-value=3.8e-05  Score=79.53  Aligned_cols=89  Identities=11%  Similarity=-0.064  Sum_probs=75.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhccccchhhhH
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK----SFWQFALCRFFVGLSFDNCFTMM  477 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~  477 (493)
                      ..+.++..+...++..++.++.|+++||+|||++++.+.++.+++.++..+.+    +...+.+.+++.|++.+...+..
T Consensus        62 ~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~  141 (452)
T PRK11273         62 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC  141 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHH
Confidence            44788999999999999999999999999999999999988888887777643    56677778888898888777877


Q ss_pred             hhhhhcccCCCCc
Q psy13410        478 YILETNRKPFPGC  490 (493)
Q Consensus       478 ~~~~~e~~p~~~~  490 (493)
                      ...+.|.+|++-+
T Consensus       142 ~~~~~~~~~~~~r  154 (452)
T PRK11273        142 GRTMVHWWSQKER  154 (452)
T ss_pred             HHHHHHhCChHHH
Confidence            8888999987644

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.84  E-value=5.1e-05  Score=77.46  Aligned_cols=88  Identities=9%  Similarity=0.007  Sum_probs=77.5

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHhccccchhhhHh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF---TKSFWQFALCRFFVGLSFDNCFTMMY  478 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~  478 (493)
                      ..+.+++.+...++..+++++.|++.||+|||+.+..+.++.+++.++...   .++++.+++..++.|++.+...+...
T Consensus        37 ~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~  116 (410)
T TIGR00885        37 AFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAAN  116 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhh
Confidence            457899999999999999999999999999999999999998888777544   35788888899999999999999999


Q ss_pred             hhhhcccCCCC
Q psy13410        479 ILETNRKPFPG  489 (493)
Q Consensus       479 ~~~~e~~p~~~  489 (493)
                      .++.+..|++.
T Consensus       117 ~~~~~~~~~~~  127 (410)
T TIGR00885       117 PYILVMGPEST  127 (410)
T ss_pred             HHHHHHCCHhH
Confidence            99999887653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.83  E-value=0.00018  Score=71.15  Aligned_cols=99  Identities=14%  Similarity=0.064  Sum_probs=88.2

Q ss_pred             chhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q psy13410        389 TTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGL  468 (493)
Q Consensus       389 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~  468 (493)
                      +.+..+.++   +..+.|++.+.+.+..-++-++.|.++||.+.|..+.+++++.++..++++++++...+.++.++.|+
T Consensus        53 p~l~e~~~l---sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~  129 (448)
T COG2271          53 PALIEDGGL---SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGW  129 (448)
T ss_pred             HHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            344444443   35589999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhHhhhhhcccCCCCc
Q psy13410        469 SFDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       469 ~~~~~~~~~~~~~~e~~p~~~~  490 (493)
                      ..+..+|.....++.-+|++.|
T Consensus       130 fQg~Gwpp~~~~i~~Wfsr~eR  151 (448)
T COG2271         130 FQGMGWPPCARTITHWFSRKER  151 (448)
T ss_pred             HhcCCCcHHHHHHHHHcCcccc
Confidence            9999999999999999996544

>TIGR00896 CynX cyanate transporter

Probab=97.82  E-value=8.9e-05  Score=73.99  Aligned_cols=87  Identities=11%  Similarity=0.056  Sum_probs=69.4

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI  144 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~  144 (493)
                      +..+.+++.++..++..+++++.|+++||+ +||..+..+.++..++.++..+.++...+. .-++.|++.|...+....
T Consensus       230 ~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~  308 (355)
T TIGR00896       230 SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALT  308 (355)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHH
Confidence            566788999999999999999999999999 677788888888888877777766544332 457889999999988877


Q ss_pred             hcccccccc
Q psy13410        145 LGMPIYKTR  153 (493)
Q Consensus       145 ~i~e~~~~~  153 (493)
                      .+.+..+++
T Consensus       309 ~~~~~~~~~  317 (355)
T TIGR00896       309 LIGLRSRQA  317 (355)
T ss_pred             HHHHhccCH
Confidence            777655543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.81  E-value=4.5e-05  Score=79.22  Aligned_cols=88  Identities=14%  Similarity=0.217  Sum_probs=76.5

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhccccchhhhHhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT--KSFWQFALCRFFVGLSFDNCFTMMYI  479 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~  479 (493)
                      ..+.|++...+.++.+++.+++|+++||+|||+.+..+.++..++.++..+.  .+...+++.+++.|++.+...+....
T Consensus        75 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~  154 (465)
T TIGR00894        75 GALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHK  154 (465)
T ss_pred             HHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHH
Confidence            4478899999999999999999999999999999999988877777666443  45677888999999999999999999


Q ss_pred             hhhcccCCCC
Q psy13410        480 LETNRKPFPG  489 (493)
Q Consensus       480 ~~~e~~p~~~  489 (493)
                      ++.|.+|++-
T Consensus       155 ~~~~~~~~~~  164 (465)
T TIGR00894       155 IIVKWAPPKE  164 (465)
T ss_pred             HHHhcCCHHH
Confidence            9999999653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.81  E-value=0.00014  Score=73.87  Aligned_cols=89  Identities=7%  Similarity=0.030  Sum_probs=75.7

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhc
Q psy13410         67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILG  146 (493)
Q Consensus        67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i  146 (493)
                      ....+++.++..+...++.+..|++.||+|||+.+.++.++.+++.++.+.+++.+.+++.+++.|++.+........++
T Consensus       253 ~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  332 (396)
T TIGR00882       253 TRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYI  332 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888888888999999999999999999999999999999888878899999999999999999877666666777


Q ss_pred             cccccccCc
Q psy13410        147 MPIYKTRNL  155 (493)
Q Consensus       147 ~e~~~~~~R  155 (493)
                      .+..+++.|
T Consensus       333 ~~~~~~~~~  341 (396)
T TIGR00882       333 TSQFDVRLS  341 (396)
T ss_pred             HHhCCcceE
Confidence            777776644

>TIGR00897 2A0118 polyol permease family

Probab=97.81  E-value=0.00017  Score=73.39  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=65.3

Q ss_pred             ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHH-HHHHHHHHHHHHHHh-----cccHHHHHHHHHHH
Q psy13410         58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALV-LTNLVGFIFGVITAF-----TKSFWQFALCRFFV  131 (493)
Q Consensus        58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~-~~~~~~~i~~~~~a~-----a~s~~~l~~~R~l~  131 (493)
                      ++.+.   +..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+     .++++.+++..++.
T Consensus       250 ~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (402)
T TIGR00897       250 AELGF---STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIAL  326 (402)
T ss_pred             HHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            44555   4556788888899999999999999999999988764 344444444333332     34677788899999


Q ss_pred             hhcccchhhhhhhhccccccccCc
Q psy13410        132 GLSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       132 Gi~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      |++.++..+. ...+.|..| ++|
T Consensus       327 G~~~~~~~~~-~~~~~~~~~-~~~  348 (402)
T TIGR00897       327 GIFLAGYVPL-AAVFPTLAP-KHK  348 (402)
T ss_pred             HHHHHHHHHH-HHHHHhhCc-chh
Confidence            9988876554 455667654 445

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG3764|consensus

Probab=97.80  E-value=5.6e-05  Score=73.84  Aligned_cols=89  Identities=19%  Similarity=0.117  Sum_probs=84.8

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhh
Q psy13410        401 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL  480 (493)
Q Consensus       401 ~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  480 (493)
                      +..+.|++.+...+..++.+.+.|.+.||+|+|..+++|+.++..+.+++++..+++.+.+.+.+-|+|.+...++...+
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglam  183 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAM  183 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCC
Q psy13410        481 ETNRKPFPG  489 (493)
Q Consensus       481 ~~e~~p~~~  489 (493)
                      +++.||.+-
T Consensus       184 lAd~f~~d~  192 (464)
T KOG3764|consen  184 LADVFPEDN  192 (464)
T ss_pred             HHHHcccch
Confidence            999999754

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.80  E-value=0.0001  Score=85.49  Aligned_cols=100  Identities=16%  Similarity=0.039  Sum_probs=87.6

Q ss_pred             cccccccccccc-hhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         57 TPQLNWVCTQDT-LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        57 ~~~~~~~~~~~~-~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      .++++.   +.. ..+++.++..++..+|++++|+++||+++|.++.++.++.+++.++.++..+.+.++++-++.|++.
T Consensus       260 ~~~~g~---s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  336 (1146)
T PRK08633        260 KEVLGL---DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA  336 (1146)
T ss_pred             HHHhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            344454   445 7889999999999999999999999999999999999999999888888889999999999999999


Q ss_pred             cchhhhhhhhccccccccCccccc
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                      +...+...+++.+..|++.|+.+.
T Consensus       337 ~~~~~~~~~~~~~~~p~~~rg~~~  360 (1146)
T PRK08633        337 GLFIVPLNALIQFRAPEKELGKVL  360 (1146)
T ss_pred             HHhhHHHHHHHhhcCCccchhhhh
Confidence            999999999999999998775443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.79  E-value=0.00014  Score=74.63  Aligned_cols=86  Identities=19%  Similarity=0.367  Sum_probs=80.6

Q ss_pred             chhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410         68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK--SFWQFALCRFFVGLSFDNCFTMMYIL  145 (493)
Q Consensus        68 ~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~--s~~~l~~~R~l~Gi~~g~~~~~~~~~  145 (493)
                      ...+++..+..++..++.+++++++||+|||+++..+.++..++.++..+.+  |.+.+++.-++.|++.|+.++...++
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            4577888899999999999999999999999999999999999999999886  99999999999999999999999999


Q ss_pred             cccccccc
Q psy13410        146 GMPIYKTR  153 (493)
Q Consensus       146 i~e~~~~~  153 (493)
                      ++|..+.+
T Consensus       340 ~ad~id~~  347 (428)
T PF13347_consen  340 LADVIDYD  347 (428)
T ss_pred             cccchhhH
Confidence            99999854

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.78  E-value=0.00013  Score=73.60  Aligned_cols=90  Identities=8%  Similarity=0.015  Sum_probs=79.4

Q ss_pred             ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccc
Q psy13410         58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDN  137 (493)
Q Consensus        58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~  137 (493)
                      +|.+.   +..+.+.+.++..++..++.++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+.
T Consensus       233 ~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  309 (382)
T PRK11128        233 QAAGY---SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTV  309 (382)
T ss_pred             HHCCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            34554   556688888888899999999999999999999999999999999888888899999999999999999999


Q ss_pred             hhhhhhhhccccc
Q psy13410        138 CFTMMYILGMPIY  150 (493)
Q Consensus       138 ~~~~~~~~i~e~~  150 (493)
                      ..+....++.+..
T Consensus       310 ~~~~~~~~~~~~~  322 (382)
T PRK11128        310 CHLAAMRYIAARP  322 (382)
T ss_pred             HHHHHHHHHHHCC
Confidence            8898888888863

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.78  E-value=6.4e-05  Score=76.21  Aligned_cols=99  Identities=14%  Similarity=0.111  Sum_probs=88.1

Q ss_pred             cchhhhhcccccccchh-hhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy13410        388 YTTIATELNWVCTQDTL-STWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFV  466 (493)
Q Consensus       388 ~~~~~~~~~l~~~~~~~-~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~  466 (493)
                      .+.+..++++.   ..+ .|.+..++..+..++.+++|+++||+|.|+++..+.+...+..++.+++++...+.+.++++
T Consensus        49 ~p~L~~elglT---~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll  125 (511)
T TIGR00806        49 TPYLLTVLNFT---EETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY  125 (511)
T ss_pred             HHHHHHHcCCC---HHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666664   335 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccchhhhHhhhhhcccCCCCc
Q psy13410        467 GLSFDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       467 g~~~~~~~~~~~~~~~e~~p~~~~  490 (493)
                      |++.+..+ +...++...+|++-+
T Consensus       126 GvaEA~~~-A~~syI~~WfP~kER  148 (511)
T TIGR00806       126 SVTMAARI-AYSSYIFSLVPPSRY  148 (511)
T ss_pred             HHHHHHHH-HHHHHHHHHCCHHHH
Confidence            99999999 999999999997543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.73  E-value=7.3e-05  Score=77.06  Aligned_cols=89  Identities=11%  Similarity=-0.043  Sum_probs=74.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHhccccchhhhH
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT----KSFWQFALCRFFVGLSFDNCFTMM  477 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~  477 (493)
                      ..+.++..++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.    .+...+.+.+++.|++.+..++..
T Consensus        60 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~  139 (438)
T TIGR00712        60 KGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPC  139 (438)
T ss_pred             HhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHH
Confidence            4478899999999999999999999999999999999888888877776553    345566677888899888888888


Q ss_pred             hhhhhcccCCCCc
Q psy13410        478 YILETNRKPFPGC  490 (493)
Q Consensus       478 ~~~~~e~~p~~~~  490 (493)
                      ..++.|.+|++-+
T Consensus       140 ~~~i~~~~~~~~r  152 (438)
T TIGR00712       140 GRTMVHWWSQSER  152 (438)
T ss_pred             HHHHHHhcCcccc
Confidence            8999999986543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PTZ00207 hypothetical protein; Provisional

Probab=97.71  E-value=0.0004  Score=73.34  Aligned_cols=70  Identities=17%  Similarity=0.065  Sum_probs=61.1

Q ss_pred             HHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHhccccchhhhHhhhhhcccCC
Q psy13410        418 VGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT------KSFWQFALCRFFVGLSFDNCFTMMYILETNRKPF  487 (493)
Q Consensus       418 ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~  487 (493)
                      .+.++.|++.||+|||+++.++.++.+++.++.+++      .+.+.+.+++++.|++.+...+.....+.+.||.
T Consensus        76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~  151 (591)
T PTZ00207         76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS  151 (591)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence            355678999999999999999999999998888876      5788888899999999888888888888999985

>PRK09669 putative symporter YagG; Provisional

Probab=97.68  E-value=0.00044  Score=71.38  Aligned_cols=84  Identities=14%  Similarity=0.182  Sum_probs=68.4

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHhhcccchhhhhhhhc
Q psy13410         69 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF--TKSFWQFALCRFFVGLSFDNCFTMMYILG  146 (493)
Q Consensus        69 ~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~--a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i  146 (493)
                      ..+.+.+...+...++.+++++++||+|||+.+..+.++..++.+...+  .++.+.+++..++.|++.++..+...+.+
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666777888899999999999999999999988777655443333  35777888889999999999999999999


Q ss_pred             cccccc
Q psy13410        147 MPIYKT  152 (493)
Q Consensus       147 ~e~~~~  152 (493)
                      +|..+.
T Consensus       345 ad~~d~  350 (444)
T PRK09669        345 SDVVDY  350 (444)
T ss_pred             Hhhhhh
Confidence            999863

>TIGR01272 gluP glucose/galactose transporter

Probab=97.64  E-value=0.00032  Score=68.74  Aligned_cols=87  Identities=15%  Similarity=0.247  Sum_probs=74.1

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL  145 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~  145 (493)
                      +..+.++..+.+..++.+|.++.++++||+|+|+++.++.++..++.++....++...+ .+-++.|++.+..+|...+.
T Consensus       176 s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~  254 (310)
T TIGR01272       176 PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSL  254 (310)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999988888887766666654433 35558999999999999999


Q ss_pred             cccccccc
Q psy13410        146 GMPIYKTR  153 (493)
Q Consensus       146 i~e~~~~~  153 (493)
                      ..+..|++
T Consensus       255 a~~~~~~~  262 (310)
T TIGR01272       255 ALNALGRH  262 (310)
T ss_pred             HHhhhhhh
Confidence            99988864

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.63  E-value=0.00037  Score=73.11  Aligned_cols=85  Identities=13%  Similarity=-0.048  Sum_probs=64.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhh-cCCchHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVVTAFTK-SFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+++............+++|+++|| +|||+.+..+.++.+++.+++.++. +...+.++.++.|++.+...+...+++
T Consensus        58 ~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~  137 (500)
T PRK09584         58 DSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLL  137 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHH
Confidence            34455554444444455789999999 5999999999999888887777764 455566677888888888888888999


Q ss_pred             hcccCCC
Q psy13410        482 TNRKPFP  488 (493)
Q Consensus       482 ~e~~p~~  488 (493)
                      .|.+|++
T Consensus       138 ~~~f~~~  144 (500)
T PRK09584        138 STCYEKD  144 (500)
T ss_pred             HHhcCCC
Confidence            9999864

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.63  E-value=8.5e-05  Score=79.97  Aligned_cols=89  Identities=7%  Similarity=0.074  Sum_probs=77.5

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh---------------------------
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK---------------------------  454 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~---------------------------  454 (493)
                      ..+.|++.+.+.++.+++.++.+++.||+|||+.+.++.++++++.++.++.+                           
T Consensus        67 s~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~  146 (633)
T TIGR00805        67 TSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCM  146 (633)
T ss_pred             CCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccccccc
Confidence            34678888899999999999999999999999999999999999988877642                           


Q ss_pred             ------------------------hHHHHHHHHHHHhccccchhhhHhhhhhcccCCCCc
Q psy13410        455 ------------------------SFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       455 ------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~  490 (493)
                                              .+..+++++++.|+|.+..++...+|+.|.+|++.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~  206 (633)
T TIGR00805       147 ENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNS  206 (633)
T ss_pred             CCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcccc
Confidence                                    134567899999999999999999999999998754

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.57  E-value=9.3e-05  Score=73.03  Aligned_cols=90  Identities=18%  Similarity=0.203  Sum_probs=70.2

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc-------cH----HHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK-------SF----WQF  124 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~-------s~----~~l  124 (493)
                      +.++|++   +....+...+.+.+-..+..++.|+++||+|.++++......+.++.++.+..+       +.    ..+
T Consensus       245 ~~~~fg~---~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  321 (417)
T COG2223         245 LVTQFGL---SPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVF  321 (417)
T ss_pred             HHHhcCC---ChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHH
Confidence            6778887   556677888889999999999999999999999999999999999998888763       33    345


Q ss_pred             HHHHHHHhhcccchhhhhhhhccccccc
Q psy13410        125 ALCRFFVGLSFDNCFTMMYILGMPIYKT  152 (493)
Q Consensus       125 ~~~R~l~Gi~~g~~~~~~~~~i~e~~~~  152 (493)
                      ++..+..|+|.|..+-    .+..++|+
T Consensus       322 l~l~~~~G~GnGsvfk----~Ip~if~~  345 (417)
T COG2223         322 LALFVFAGLGNGSVFK----MIPVIFPK  345 (417)
T ss_pred             HHHHHHhccCcchhee----echHHHHh
Confidence            6677777887776554    34444443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.53  E-value=0.018  Score=57.80  Aligned_cols=76  Identities=14%  Similarity=0.089  Sum_probs=59.1

Q ss_pred             HHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccc
Q psy13410         76 FFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKT  152 (493)
Q Consensus        76 ~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~  152 (493)
                      +-.+-..+-.+++.++.+|+.-+.=...+.++..++.++.++++|.+.=+++-.+.|++.|........+. ..+++
T Consensus        67 adi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~  142 (402)
T PF02487_consen   67 ADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGK  142 (402)
T ss_pred             HHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCc
Confidence            33445556667778888988766666667778888899999999999999999999999998888777764 46664

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.50  E-value=0.0007  Score=70.88  Aligned_cols=97  Identities=16%  Similarity=0.163  Sum_probs=67.5

Q ss_pred             ecccccccccccchhhHHH-HHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHH---Hhc-ccHHHHHHHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQ-AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVIT---AFT-KSFWQFALCRFF  130 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~-s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~---a~a-~s~~~l~~~R~l  130 (493)
                      +.++.|.   +..+.+++. +...++..+|.++.|+++||+|||+.+.++.++.+++.+..   +.. ++...+.+.-++
T Consensus       249 l~~~~G~---s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l  325 (491)
T PRK11010        249 LIRGVGF---DAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF  325 (491)
T ss_pred             HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            3445565   666788876 46678999999999999999999988877666555544322   333 456556666667


Q ss_pred             HhhcccchhhhhhhhccccccccCc
Q psy13410        131 VGLSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       131 ~Gi~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      +.++.|...+...++..+..+++.+
T Consensus       326 ~~~~~g~~~~~~~a~~~~l~~~~~~  350 (491)
T PRK11010        326 ENLCGGMGTAAFVALLMTLCNKSFS  350 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            6666665666667777788877644

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.47  E-value=0.00017  Score=54.98  Aligned_cols=67  Identities=18%  Similarity=0.271  Sum_probs=61.4

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFA  125 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~  125 (493)
                      +++|.++   +.++.+|+.+.+++|+.+|++....+.++..+++.+..+++...+..+.+++.++++.+.
T Consensus        18 M~~~~~l---s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen   18 MQADGGL---SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            6777777   778899999999999999999999999999999999999999999999999999887654

Note that many members are hypothetical proteins.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.45  E-value=0.0016  Score=66.21  Aligned_cols=88  Identities=10%  Similarity=0.117  Sum_probs=77.4

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhhcccchhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK--SFWQFALCRFFVGLSFDNCFTMMY  143 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~--s~~~l~~~R~l~Gi~~g~~~~~~~  143 (493)
                      ++....+.......+..++.+++.++++|+|||+++.++.++..++.++.-+.+  +...+++...+.++|.+...+...
T Consensus       270 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~w  349 (467)
T COG2211         270 PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPW  349 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccH
Confidence            344555677777788888899999999999999999999999999999999876  789999999999999999999999


Q ss_pred             hhcccccccc
Q psy13410        144 ILGMPIYKTR  153 (493)
Q Consensus       144 ~~i~e~~~~~  153 (493)
                      +.++|...-.
T Consensus       350 am~~d~vDyg  359 (467)
T COG2211         350 AMVADTVDYG  359 (467)
T ss_pred             HHhcchhhHH
Confidence            9999887543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.43  E-value=0.00096  Score=57.79  Aligned_cols=85  Identities=11%  Similarity=0.102  Sum_probs=73.4

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccc
Q psy13410         70 STWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPI  149 (493)
Q Consensus        70 ~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~  149 (493)
                      -..-.++.+...++++++.+.+.+++|.|+.++++.+.+.+..+. -+-++.+.++.+-.+.|++.+..++..-.++.+.
T Consensus        39 G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   39 GYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            344567788888999999999999999999999999998865544 3567889999999999999999999999999999


Q ss_pred             ccccCc
Q psy13410        150 YKTRNL  155 (493)
Q Consensus       150 ~~~~~R  155 (493)
                      ..++.|
T Consensus       118 s~~~~~  123 (156)
T PF05978_consen  118 STEETI  123 (156)
T ss_pred             CCHHHH
Confidence            988755

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.43  E-value=0.00084  Score=68.29  Aligned_cols=97  Identities=19%  Similarity=0.250  Sum_probs=70.0

Q ss_pred             ecccccccccccchhhHHHHHH-HHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHH---Hhc-ccHHHHHHHH--
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFF-FCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVIT---AFT-KSFWQFALCR--  128 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~-~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~---a~a-~s~~~l~~~R--  128 (493)
                      +.++++.   +..+.+++.+.. .++..+|.++.|++.||+|||+.+..+.++..+..+..   ++. ++.+.+++.-  
T Consensus       236 l~~~~G~---~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  312 (402)
T PRK11902        236 LIRGAGF---SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI  312 (402)
T ss_pred             HHHhcCC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            4455665   556677776554 45789999999999999999999888777766655433   344 4555555443  


Q ss_pred             --HHHhhcccchhhhhhhhccccccccCc
Q psy13410        129 --FFVGLSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       129 --~l~Gi~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                        +..|++.+...+....++.+.+|.+.+
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  341 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSATQY  341 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHH
Confidence              567777888888899999999887643

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.41  E-value=0.00062  Score=78.97  Aligned_cols=100  Identities=14%  Similarity=0.109  Sum_probs=82.2

Q ss_pred             cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc------------------
Q psy13410         57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT------------------  118 (493)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a------------------  118 (493)
                      .+.++.   +....+++.+.+.+|.++|+++.|+++|++++++.+..+.++.+++.+..++.                  
T Consensus       253 ~~~~g~---~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  329 (1140)
T PRK06814        253 KETLGG---DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFL  329 (1140)
T ss_pred             HHHcCC---chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhh
Confidence            344554   56779999999999999999999999999888877777776666666555543                  


Q ss_pred             --ccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410        119 --KSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD  159 (493)
Q Consensus       119 --~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~  159 (493)
                        ++.+.++++-++.|++.|...+...+++.+..|++.|+.+.
T Consensus       330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~  372 (1140)
T PRK06814        330 SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVI  372 (1140)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeee
Confidence              67888889999999999999999999999999998875444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.31  E-value=0.0018  Score=65.48  Aligned_cols=95  Identities=12%  Similarity=-0.008  Sum_probs=65.9

Q ss_pred             ccccccccccchhhHHHHHHH-HHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh------cccHHHHHHHHHH
Q psy13410         58 PQLNWVCTQDTLSTWAQAFFF-CGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF------TKSFWQFALCRFF  130 (493)
Q Consensus        58 ~~~~~~~~~~~~~~~~~s~~~-lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~------a~s~~~l~~~R~l  130 (493)
                      .|.+.   +..+.+++..+.. .+..++.++.|++.||+|||+++..+.++..+..+....      .++...++..-.+
T Consensus       236 ~~~G~---s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (390)
T TIGR02718       236 VDAGW---PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAF  312 (390)
T ss_pred             HhcCC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHH
Confidence            34555   5667888777765 577788999999999999999998887766443332221      2344455566666


Q ss_pred             Hhhcccchhhhhhhhccccccc-cCc
Q psy13410        131 VGLSFDNCFTMMYILGMPIYKT-RNL  155 (493)
Q Consensus       131 ~Gi~~g~~~~~~~~~i~e~~~~-~~R  155 (493)
                      .+++.|...+...+.+.+..++ +.+
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~  338 (390)
T TIGR02718       313 GSLITGITSVAIYTAFMRFAGDGDQA  338 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcccch
Confidence            7777788878788887777765 444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.28  E-value=0.024  Score=61.15  Aligned_cols=111  Identities=14%  Similarity=0.140  Sum_probs=82.8

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHhhccc
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTKS--------FWQFALCRFFVGLSFD  136 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~a~a~s--------~~~l~~~R~l~Gi~~g  136 (493)
                      ++.....+...+....-+.+++.|.++|+ +||+++++++.++..++.++.+++..        ...++++=.+..+|.|
T Consensus        21 ~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~G  100 (654)
T TIGR00926        21 SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTG  100 (654)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhcc
Confidence            44455566667777777888899999996 59999999999999999988887521        2346778888999999


Q ss_pred             chhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHH
Q psy13410        137 NCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAE  185 (493)
Q Consensus       137 ~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~  185 (493)
                      +.-+...+...|.+.++++         ..+-+++..+.....+|+.+.
T Consensus       101 giKp~vsaf~gdqf~~~~~---------~~~~s~F~~fY~~iNiGSlis  140 (654)
T TIGR00926       101 GIKPCVSAFGGDQFEERQL---------SLRSRFFSFFYFAINAGSLIS  140 (654)
T ss_pred             ccccCchhhhHhhcCccch---------hHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999986544         234445555555555555444

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.25  E-value=0.001  Score=67.39  Aligned_cols=83  Identities=17%  Similarity=0.079  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHHHHHhHHhhhhhc-CCchHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhccccchhhhHhhhhh
Q psy13410        406 TWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVVTAFT--KSFWQFALCRFFVGLSFDNCFTMMYILET  482 (493)
Q Consensus       406 ~~~~~~~~i~~~ig~~~~g~l~Dr~-Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  482 (493)
                      .-+...+..-.-+..+++||++||+ |+|++++++.++++++-++++..  .+...+.++..++++|.|..=+...+++.
T Consensus        64 ~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg  143 (498)
T COG3104          64 TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLG  143 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHH
Confidence            3334444444556778999999996 99999999999999999999987  47888889999999999999999999999


Q ss_pred             cccCCC
Q psy13410        483 NRKPFP  488 (493)
Q Consensus       483 e~~p~~  488 (493)
                      |++|++
T Consensus       144 ~ly~~~  149 (498)
T COG3104         144 ELYPKD  149 (498)
T ss_pred             HhcCCC
Confidence            999964

>PRK11462 putative transporter; Provisional

Probab=97.25  E-value=0.0046  Score=64.13  Aligned_cols=83  Identities=11%  Similarity=0.114  Sum_probs=59.5

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHhhcccchhhhhhhhc
Q psy13410         69 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS--FWQFALCRFFVGLSFDNCFTMMYILG  146 (493)
Q Consensus        69 ~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s--~~~l~~~R~l~Gi~~g~~~~~~~~~i  146 (493)
                      ..+++.+++.++..++.+++++++||+|||+++..+..+..+..++..+.++  ...+++.-++.|++.++..+...+.+
T Consensus       264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~  343 (460)
T PRK11462        264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMM  343 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777888899999999999999999999987666655554444444332  33445555677888877777777777


Q ss_pred             ccccc
Q psy13410        147 MPIYK  151 (493)
Q Consensus       147 ~e~~~  151 (493)
                      .|...
T Consensus       344 ad~~d  348 (460)
T PRK11462        344 SDTVD  348 (460)
T ss_pred             HHhHh
Confidence            77765

>KOG2504|consensus

Probab=97.24  E-value=0.00048  Score=71.88  Aligned_cols=111  Identities=12%  Similarity=0.223  Sum_probs=97.4

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccC--ChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFG--RVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMY  143 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~G--Rr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~  143 (493)
                      ++.+.+.+.++..+.-.+|.++.|+++|+..  ++.+..+++++.+++.+.+.++++++.+++.-.+.|++.|.......
T Consensus       331 ~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~  410 (509)
T KOG2504|consen  331 SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTP  410 (509)
T ss_pred             ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788999999999999999999999999998  77889999999999999999999999999999999999999999999


Q ss_pred             hhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410        144 ILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV  188 (493)
Q Consensus       144 ~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~  188 (493)
                      .++.|..+.+            ....+.++......++...++.+
T Consensus       411 ~i~~~~~g~~------------~l~~a~Gl~l~~~gi~~l~gpPi  443 (509)
T KOG2504|consen  411 VILVDLVGLE------------KLSNAYGLLLLFQGIGALVGPPI  443 (509)
T ss_pred             HHHHHHcChh------------hcchHHHHHHHHhHHHHHcCccc
Confidence            9999999986            45556666666666666666555

>KOG2532|consensus

Probab=97.23  E-value=0.00055  Score=70.56  Aligned_cols=89  Identities=22%  Similarity=0.395  Sum_probs=79.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhccccchhhhHhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK--SFWQFALCRFFVGLSFDNCFTMMYI  479 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~  479 (493)
                      ..+.+++...+..|.+++.+.+|++.||+|-|+++..+.++.++..++..++.  +.+.+++.+++.|++.+..++++..
T Consensus        72 ~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~  151 (466)
T KOG2532|consen   72 STEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGS  151 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhc
Confidence            34889999999999999999999999999999999999999999888888764  4446788999999999999999999


Q ss_pred             hhhcccCCCCc
Q psy13410        480 LETNRKPFPGC  490 (493)
Q Consensus       480 ~~~e~~p~~~~  490 (493)
                      +.+.-.|++.+
T Consensus       152 i~~~W~P~~Er  162 (466)
T KOG2532|consen  152 ILAKWAPPNER  162 (466)
T ss_pred             eeeeECCHHHH
Confidence            99999997554

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.19  E-value=0.025  Score=58.06  Aligned_cols=84  Identities=8%  Similarity=-0.071  Sum_probs=51.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCc--hHHHHHH--HHHHHHHHHHHh---------hhhHHHHHHHHHHHhccc
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRV--PALVLTN--LVGFIFGVVTAF---------TKSFWQFALCRFFVGLSF  470 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr--~~l~~~~--~~~~i~~~~~~~---------~~~~~~~~~~~~l~g~~~  470 (493)
                      ..-....++++|.++|..+..+.. +-.+|  .+.+...  ++.....+++..         .++-+..++..+++|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            456778889999999998765432 11222  3322221  111111222211         134556677789999999


Q ss_pred             cchhhhHhhhhhcccCCC
Q psy13410        471 DNCFTMMYILETNRKPFP  488 (493)
Q Consensus       471 ~~~~~~~~~~~~e~~p~~  488 (493)
                      |-..+....+.++..+++
T Consensus       387 Gy~~s~~m~~~p~~v~~~  404 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPH  404 (437)
T ss_pred             hHHHHHHHHhcCCCCCHH
Confidence            888888898888887653

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.07  E-value=0.0016  Score=64.23  Aligned_cols=101  Identities=18%  Similarity=0.103  Sum_probs=87.5

Q ss_pred             CCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHH---hhhhHHHHHH
Q psy13410        385 DIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTA---FTKSFWQFAL  461 (493)
Q Consensus       385 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~~~~  461 (493)
                      +...+++...|++   +..++++++..+..|..++++..|++.+|+|+|.-++.++.++++++.++.   ...++..++.
T Consensus        33 diLip~l~~~f~l---s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~  109 (422)
T COG0738          33 DILIPHLKEVFDL---TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV  109 (422)
T ss_pred             hhhHHHHHHHhCc---cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            3455566666776   456899999999999999999999999999999999999999999988875   4567888888


Q ss_pred             HHHHHhccccchhhhHhhhhhcccCCC
Q psy13410        462 CRFFVGLSFDNCFTMMYILETNRKPFP  488 (493)
Q Consensus       462 ~~~l~g~~~~~~~~~~~~~~~e~~p~~  488 (493)
                      ..++.+.|.+...+....|+..+.|++
T Consensus       110 ~lFila~Gi~~LetaaNp~v~~lg~~~  136 (422)
T COG0738         110 ALFILASGIGLLETAANPYVTLLGKPE  136 (422)
T ss_pred             HHHHHHhhhHHHHhccchHHHHhCCch
Confidence            999999999999999999999988874

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.07  E-value=0.0011  Score=66.72  Aligned_cols=90  Identities=13%  Similarity=0.202  Sum_probs=80.5

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL  145 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~  145 (493)
                      .+...|.+.++..+.-++.-.+..++.+|+|.|+.++++.+++++=.++++++++.+.+.+.+.+.|+-.+.......-|
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY  336 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY  336 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCc
Q psy13410        146 GMPIYKTRNL  155 (493)
Q Consensus       146 i~e~~~~~~R  155 (493)
                      +.+.+++|..
T Consensus       337 I~~~fd~rls  346 (412)
T PF01306_consen  337 ITAHFDKRLS  346 (412)
T ss_dssp             HHHHS-GGGH
T ss_pred             HHHhCCHhHH
Confidence            9999998743

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0637|consensus

Probab=96.99  E-value=0.008  Score=60.22  Aligned_cols=80  Identities=11%  Similarity=0.093  Sum_probs=55.6

Q ss_pred             HHHHHHHhhhhhhhhhhc----ccCChhHHHHHHH-HHHHHHHHHHhcccHH-----------------HHHHHHHHHhh
Q psy13410         76 FFFCGAIVGGLVFGWVAD----RFGRVPALVLTNL-VGFIFGVITAFTKSFW-----------------QFALCRFFVGL  133 (493)
Q Consensus        76 ~~~lg~~ig~~i~g~l~D----r~GRr~~l~~~~~-~~~i~~~~~a~a~s~~-----------------~l~~~R~l~Gi  133 (493)
                      +--+...+-+|+.|..+|    |||||+.++.+.. ..+++-++..+++++.                 .++++--+.=+
T Consensus        75 ~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~  154 (498)
T KOG0637|consen   75 CGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDV  154 (498)
T ss_pred             ccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHh
Confidence            334455667899999999    6999887777664 4455556777775543                 34444445555


Q ss_pred             cccchhhhhhhhccccccccCc
Q psy13410        134 SFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       134 ~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      +.-..+...-+++.|....+.+
T Consensus       155 A~n~~qgp~ra~L~Dl~~~d~~  176 (498)
T KOG0637|consen  155 ANNTLQGPCRALLADLARGDAK  176 (498)
T ss_pred             hhhhhhhhHHHHHHHhccChhh
Confidence            6667788888999999987755

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.95  E-value=0.0019  Score=66.67  Aligned_cols=89  Identities=9%  Similarity=0.073  Sum_probs=66.8

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhh----hcCCchHHHHH-HHHHHHHHHHHHhhhhH-----------------HHH
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVAD----RFGRVPALVLT-NLVGFIFGVVTAFTKSF-----------------WQF  459 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~D----r~Grr~~l~~~-~~~~~i~~~~~~~~~~~-----------------~~~  459 (493)
                      ....+++..+..+..++..++.|+++|    |+|||+.++.. .+..+++.+++.++.+.                 ...
T Consensus        38 ~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~  117 (477)
T TIGR01301        38 HAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVF  117 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHH
Confidence            457888888999999999999999999    59999998775 55556666666665432                 223


Q ss_pred             HHHHHHHhccccchhhhHhhhhhcccCCCCc
Q psy13410        460 ALCRFFVGLSFDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       460 ~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~  490 (493)
                      +++..+..++.....+..-++++|.+|++-+
T Consensus       118 ~i~~~lld~~~n~~~~p~rALiaDl~p~~~~  148 (477)
T TIGR01301       118 VVGFWILDVANNMLQGPCRAFLADLTGGDAR  148 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCchhH
Confidence            4445556667777778889999999997643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00788 fbt folate/biopterin transporter

Probab=96.89  E-value=0.0036  Score=65.10  Aligned_cols=95  Identities=9%  Similarity=-0.054  Sum_probs=79.1

Q ss_pred             ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc----------ccHHHHHHH
Q psy13410         58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT----------KSFWQFALC  127 (493)
Q Consensus        58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a----------~s~~~l~~~  127 (493)
                      ...+.   +....+++.+...++..+|..+.+.+.+|++.|+++.++.++..++.+.....          ++.+.++..
T Consensus       281 ~~lG~---s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~  357 (468)
T TIGR00788       281 QCLPG---GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGD  357 (468)
T ss_pred             ccCCC---CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeeh
Confidence            34454   67788988888999999999999999999999999999999999988665421          344456667


Q ss_pred             HHHHhhcccchhhhhhhhccccccccCc
Q psy13410        128 RFFVGLSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       128 R~l~Gi~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      -++.+++.|........++++..|++.+
T Consensus       358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~e  385 (468)
T TIGR00788       358 SIIAEVLAQLKFMPFLVLLARLCPSGCE  385 (468)
T ss_pred             hHHHHHHHHHHHccHHHHHHHhCCCCce
Confidence            7889999999999999999999999744

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.84  E-value=0.0067  Score=59.08  Aligned_cols=118  Identities=12%  Similarity=0.043  Sum_probs=93.8

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLS  134 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~  134 (493)
                      +..|-+.   ++.+.+++.+...+.....++....+++| ..+|+..+.....+.++.+...+.|.-..++- -++.|+|
T Consensus       234 ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G  309 (395)
T COG2807         234 ILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLG  309 (395)
T ss_pred             HHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCc
Confidence            5555565   77889999999999999999999999995 47888888888888898888888875544444 4899999


Q ss_pred             ccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410        135 FDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV  188 (493)
Q Consensus       135 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~  188 (493)
                      .|+.++.+.+.+.+-....           ++-+...++....+.+.+..+++.
T Consensus       310 ~G~~F~laL~li~~rs~~a-----------~~Aa~LSgmaQg~GYllAa~GP~l  352 (395)
T COG2807         310 QGGAFPLALTLILLRSSDA-----------AIAAALSGMAQGVGYLLAAFGPWL  352 (395)
T ss_pred             cchHHHHHHHHHHhhcCCh-----------HHHHHHHHHhhhhhHHHHhhhhhh
Confidence            9999999999999888765           345556666666666666666655

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.58  E-value=0.003  Score=47.68  Aligned_cols=43  Identities=19%  Similarity=0.257  Sum_probs=39.4

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHH
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVG  108 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~  108 (493)
                      +..+++.+.++..+...++++++|.++||+||++..+....++
T Consensus        33 ~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   33 SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            7888999999999999999999999999999999888776654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.49  E-value=0.082  Score=54.37  Aligned_cols=96  Identities=14%  Similarity=0.125  Sum_probs=71.0

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhccc-----CChhHHHHHHHHHHHHHHHHHhcc----cHHHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF-----GRVPALVLTNLVGFIFGVITAFTK----SFWQFAL  126 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-----GRr~~l~~~~~~~~i~~~~~a~a~----s~~~l~~  126 (493)
                      +.+++++   +..+.+...++..+... ..+++|.++|-+     .||+-++++.++.+++.+..+..+    +.....+
T Consensus        16 l~~~l~l---s~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~   91 (433)
T PF03092_consen   16 LKDDLGL---SPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV   91 (433)
T ss_pred             HHHHcCC---CHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence            5667777   45555555555555444 478899999976     477777778888877666666543    5777777


Q ss_pred             HHHHHhhcccchhhhhhhhccccccccCc
Q psy13410        127 CRFFVGLSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       127 ~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      .-++..+|......++-+.+.|....+..
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~  120 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARREPE  120 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence            88889999999999999999999977644

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.45  E-value=0.024  Score=55.44  Aligned_cols=77  Identities=18%  Similarity=0.177  Sum_probs=63.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      +.+.+.....+.+.+...+.|.++||+|||+.-+..+++..++++. -..+++..+++++++.|++....+++.-+++
T Consensus        70 qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~  146 (354)
T PF05631_consen   70 QIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFESWM  146 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777777777888899999999999999999888888864 4467899999999999999888888776553

>KOG4686|consensus

Probab=96.37  E-value=0.016  Score=54.42  Aligned_cols=116  Identities=13%  Similarity=0.060  Sum_probs=80.2

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHH-HHHHhcccHHHHHHHHHHHhhc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG-VITAFTKSFWQFALCRFFVGLS  134 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~-~~~a~a~s~~~l~~~R~l~Gi~  134 (493)
                      .++.+++   +....+-+.+..+.-.++..+++|.++||+||+...+.+..+..+.+ ....  .+++.=+++-.+.|++
T Consensus       291 F~~rfGl---S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~--Ft~lsPy~~m~~lGLs  365 (459)
T KOG4686|consen  291 FQKRFGL---SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLF--FTFLSPYTSMTFLGLS  365 (459)
T ss_pred             HHHhhCC---ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHH--hhhccHHHHHHHHhhh
Confidence            5788888   44446666677777788999999999999999998887765554433 3222  3344445666677877


Q ss_pred             ccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410        135 FDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV  188 (493)
Q Consensus       135 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~  188 (493)
                      ....-......++-..|.            .+.|+..+.......++-.+.+.+
T Consensus       366 ysllAcslWP~va~~vpE------------~qLGTaygf~qsIqNLgla~i~Ii  407 (459)
T KOG4686|consen  366 YSLLACSLWPCVASLVPE------------EQLGTAYGFIQSIQNLGLAFIPII  407 (459)
T ss_pred             HHHHHHHHhhhhhhhCCH------------HHhcchHHHHHHHHhhhhhHHhhh
Confidence            655544455566666666            478888888888877776655444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.30  E-value=0.044  Score=55.67  Aligned_cols=90  Identities=14%  Similarity=-0.012  Sum_probs=73.3

Q ss_pred             chhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc-ccHHHHHH----HHHHHhhcccchhhhh
Q psy13410         68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT-KSFWQFAL----CRFFVGLSFDNCFTMM  142 (493)
Q Consensus        68 ~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a-~s~~~l~~----~R~l~Gi~~g~~~~~~  142 (493)
                      ...+.+.++..++-.+.-...+++..|+|-|++++++.+.+.+=..+.+.. ++.+..++    .-.++|+..|.....+
T Consensus       243 ~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~  322 (400)
T PF03825_consen  243 STIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAAS  322 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            345555566667777888889999999999999999999999999998887 55544433    3456999999999999


Q ss_pred             hhhccccccccCccc
Q psy13410        143 YILGMPIYKTRNLDF  157 (493)
Q Consensus       143 ~~~i~e~~~~~~R~~  157 (493)
                      ..|+.+..|++.|+.
T Consensus       323 ~~yi~~~~p~~~~at  337 (400)
T PF03825_consen  323 VRYIDRIAPPELRAT  337 (400)
T ss_pred             HHHHHHhCCccchHH
Confidence            999999999986633

>KOG2533|consensus

Probab=96.24  E-value=0.07  Score=55.46  Aligned_cols=89  Identities=22%  Similarity=0.282  Sum_probs=74.8

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+-+.+..++.++.++|.++++.+.||+.-.+.+....+.-++..++....+|.+.+++.+++.|+..+..+|....++
T Consensus        80 ~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l  159 (495)
T KOG2533|consen   80 GNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL  159 (495)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence            34678888999999999999999999999966666666666666565556688999999999999999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .-.|.++.+
T Consensus       160 g~wy~~~e~  168 (495)
T KOG2533|consen  160 GNWYGKSER  168 (495)
T ss_pred             HhhcChhhh
Confidence            998886544

>KOG3762|consensus

Probab=96.22  E-value=0.0028  Score=64.55  Aligned_cols=96  Identities=11%  Similarity=0.058  Sum_probs=85.5

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL  145 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~  145 (493)
                      .+...|.+......|-...-++.+++..|+|+-+++.+++....+=-+.....+|.|+.+-.-+++|+..|..+....+|
T Consensus       404 ~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY  483 (618)
T KOG3762|consen  404 IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISY  483 (618)
T ss_pred             cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHH
Confidence            44556667778888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCccccccc
Q psy13410        146 GMPIYKTRNLDFDDVL  161 (493)
Q Consensus       146 i~e~~~~~~R~~~~~~  161 (493)
                      ++...|++.|..+..+
T Consensus       484 ~s~vaPp~l~at~Q~l  499 (618)
T KOG3762|consen  484 ASHVAPPGLRATAQGL  499 (618)
T ss_pred             HHhhCCCcchHHHHHH
Confidence            9999999876544433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.92  E-value=0.038  Score=51.96  Aligned_cols=101  Identities=19%  Similarity=0.205  Sum_probs=71.9

Q ss_pred             CccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh-------hhHHH
Q psy13410        386 IPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT-------KSFWQ  458 (493)
Q Consensus       386 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~-------~~~~~  458 (493)
                      .+.+.+...+++   +..+...+.....+|..+| ++.|.+.|++|.+.++.++.+...++.......       .+.+.
T Consensus        23 ~yS~~Lk~~l~~---sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~   98 (250)
T PF06813_consen   23 AYSPQLKSRLGY---SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWL   98 (250)
T ss_pred             hhhHHHHHHhCC---CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHH
Confidence            445555555665   3446667777778888776 888999999999999999998888877666542       24566


Q ss_pred             HHHHHHHHhccccchhhhHhhhhhcccCC-CCc
Q psy13410        459 FALCRFFVGLSFDNCFTMMYILETNRKPF-PGC  490 (493)
Q Consensus       459 ~~~~~~l~g~~~~~~~~~~~~~~~e~~p~-~~~  490 (493)
                      +.+..++.|.+.....+....-..+.||. ||.
T Consensus        99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~  131 (250)
T PF06813_consen   99 MCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGT  131 (250)
T ss_pred             HHHHHHHHcccHHHhhhHHHHHHHHhCccccCc
Confidence            66666677777655566667777788885 543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.81  E-value=2  Score=43.88  Aligned_cols=89  Identities=10%  Similarity=0.053  Sum_probs=61.8

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHh---h---h----hHHHHHHHHHHHhcccc
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF---T---K----SFWQFALCRFFVGLSFD  471 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~---~---~----~~~~~~~~~~l~g~~~~  471 (493)
                      ....|..-+...+.++.|.++..++.+|+|..+.-.++......+..+...   .   +    +...++.+..+.-+|.-
T Consensus       292 ~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW  371 (432)
T PF06963_consen  292 PSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLW  371 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Confidence            335677777778889999999999999999998888877766555444332   1   1    23344455566666765


Q ss_pred             chhhhHhhhhhcccCCCCc
Q psy13410        472 NCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       472 ~~~~~~~~~~~e~~p~~~~  490 (493)
                      +.=-...-++.|..|++-|
T Consensus       372 ~fDL~~~qi~Qe~V~~~~R  390 (432)
T PF06963_consen  372 SFDLAVTQIMQENVPESER  390 (432)
T ss_pred             hhhHHHHHhhcccCCHHHh
Confidence            6666778888888886444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.76  E-value=0.041  Score=52.26  Aligned_cols=84  Identities=23%  Similarity=0.316  Sum_probs=67.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKS--FWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..++......++..++.++.|.++||+|||+.+..+.....++.+...+..+  ...+++..+..|++.+...+....++
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  119 (338)
T COG0477          40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL  119 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            5678888889999999999999999999998777777654444455555554  66777777778888888899999999


Q ss_pred             hcccCC
Q psy13410        482 TNRKPF  487 (493)
Q Consensus       482 ~e~~p~  487 (493)
                      .|.+|.
T Consensus       120 ~~~~~~  125 (338)
T COG0477         120 SEWFPE  125 (338)
T ss_pred             HHhcCc
Confidence            999986

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.74  E-value=1  Score=46.59  Aligned_cols=109  Identities=12%  Similarity=0.127  Sum_probs=76.4

Q ss_pred             chhhHHHHHHHHHHHhh-hhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc--c--c----------------------
Q psy13410         68 TLSTWAQAFFFCGAIVG-GLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT--K--S----------------------  120 (493)
Q Consensus        68 ~~~~~~~s~~~lg~~ig-~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a--~--s----------------------  120 (493)
                      ....++-+...+-.++. .++.+++++|++|++++......+...-++.++.  |  +                      
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~  122 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF  122 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence            46788888887777766 8999999999999999999888887777666654  1  1                      


Q ss_pred             -----HHHHHHHHHHHhhcccchhh-hhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410        121 -----FWQFALCRFFVGLSFDNCFT-MMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV  188 (493)
Q Consensus       121 -----~~~l~~~R~l~Gi~~g~~~~-~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~  188 (493)
                           .|...+.=....+-.....+ +-..++.|.+..+            +-.+..++...++.++..+++..
T Consensus       123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~------------qakRfy~l~~~ganlg~i~sg~~  184 (472)
T TIGR00769       123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID------------EAKRFYALFGLGANVALIFSGRT  184 (472)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                 22222333344444444444 6677889999876            44557777777777777766654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=95.29  E-value=0.088  Score=45.62  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCC
Q psy13410        408 AQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPF  487 (493)
Q Consensus       408 ~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~  487 (493)
                      ..++......++++++..+.+++|.|+.++++.+...+..... +-++.+.++....+.|++.+..+.....|+++...+
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            3445556666777888899999999999999998888766554 345677888899999999999999999999987765


Q ss_pred             C
Q psy13410        488 P  488 (493)
Q Consensus       488 ~  488 (493)
                      +
T Consensus       121 ~  121 (156)
T PF05978_consen  121 E  121 (156)
T ss_pred             H
Confidence            4

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF12832 MFS_1_like: MFS_1 like family

Probab=94.99  E-value=0.061  Score=40.51  Aligned_cols=41  Identities=20%  Similarity=0.296  Sum_probs=36.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHH
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLV  442 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~  442 (493)
                      ..+.|++.++.-+..+++..+.|+++||++|++.......+
T Consensus        34 ~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   34 PSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            55899999999999999999999999999999887766554

>KOG2325|consensus

Probab=94.86  E-value=0.11  Score=53.46  Aligned_cols=88  Identities=16%  Similarity=0.209  Sum_probs=68.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCC-chHHHHHHHHHHHHHHHH-Hh---hh-hHHHHHHHHHHHhccccchhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGR-VPALVLTNLVGFIFGVVT-AF---TK-SFWQFALCRFFVGLSFDNCFT  475 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Gr-r~~l~~~~~~~~i~~~~~-~~---~~-~~~~~~~~~~l~g~~~~~~~~  475 (493)
                      +..-|++.+...++..+++++.|+...|.+. |++++.+.+++.++.++. .+   .. ..+.+++++++.|+|. +..+
T Consensus        70 ~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~a  148 (488)
T KOG2325|consen   70 ATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNFA  148 (488)
T ss_pred             cchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccHH
Confidence            3467899999999999999999999999986 777788888888887776 33   22 4567788999999997 4556


Q ss_pred             hHhhhhhc--ccCCCCc
Q psy13410        476 MMYILETN--RKPFPGC  490 (493)
Q Consensus       476 ~~~~~~~e--~~p~~~~  490 (493)
                      ..=.|+++  ..+.|.|
T Consensus       149 ~lR~Y~a~~s~~~dR~r  165 (488)
T KOG2325|consen  149 VLRAYIADASTVEDRPR  165 (488)
T ss_pred             HHHHHHHhccCccchHH
Confidence            66677776  4455544

>KOG1479|consensus

Probab=94.70  E-value=0.97  Score=45.27  Aligned_cols=84  Identities=11%  Similarity=0.023  Sum_probs=53.4

Q ss_pred             hhhHHHHH-HHHHHHHHHHhHHhhhhhcCCchHHHHHHH-HHH-HHHHHHH------hhhhHHHHHHHHHHHhccccchh
Q psy13410        404 LSTWAQAF-FFCGAIVGGLVFGWVADRFGRVPALVLTNL-VGF-IFGVVTA------FTKSFWQFALCRFFVGLSFDNCF  474 (493)
Q Consensus       404 ~~~~~~~~-~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~-~~~-i~~~~~~------~~~~~~~~~~~~~l~g~~~~~~~  474 (493)
                      ..-+.... +++...+|..++.++-++= ||.+.+...+ ... ..+..+-      ...+.+..++..+++|+..|-..
T Consensus       283 y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt  361 (406)
T KOG1479|consen  283 YALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT  361 (406)
T ss_pred             hHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence            44455555 8999999988777777654 4433332221 111 2222111      23466677788889999998888


Q ss_pred             hhHhhhhhcccCCC
Q psy13410        475 TMMYILETNRKPFP  488 (493)
Q Consensus       475 ~~~~~~~~e~~p~~  488 (493)
                      +....+.++.+|++
T Consensus       362 sl~m~~aPk~v~~~  375 (406)
T KOG1479|consen  362 SLIMMYAPKQVKPS  375 (406)
T ss_pred             hheehhcCCCCChH
Confidence            88888888887754

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=94.19  E-value=0.45  Score=47.55  Aligned_cols=96  Identities=21%  Similarity=0.227  Sum_probs=77.1

Q ss_pred             cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhc-ccCChhHHHHHHHHHHHHHHHHH---hcccHHHHHHHHHHHh
Q psy13410         57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVAD-RFGRVPALVLTNLVGFIFGVITA---FTKSFWQFALCRFFVG  132 (493)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~D-r~GRr~~l~~~~~~~~i~~~~~a---~a~s~~~l~~~R~l~G  132 (493)
                      -+-|+.   +..+.+-+++....|..+|-...|.+.. |.|+|+.-.+++.+..++-.+..   ...+.+.|..+-++.|
T Consensus       236 g~Vfgm---sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  236 GEVFGM---SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             hHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            344555   4556677778889999999888888777 77888888888887777665544   4468899999999999


Q ss_pred             hcccchhhhhhhhccccccccCc
Q psy13410        133 LSFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       133 i~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      ++.|.....+.+...+...+++.
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~a  335 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRA  335 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcch
Confidence            99999999999999999988644

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=93.93  E-value=0.25  Score=37.83  Aligned_cols=57  Identities=21%  Similarity=0.299  Sum_probs=50.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHH
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQ  458 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~  458 (493)
                      ..+.+++.+.+.+|.++|.+...++.++..+++.+..+.+...+..+.+++..+...
T Consensus        26 ~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~   82 (85)
T PF06779_consen   26 LSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL   82 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            458999999999999999999999999988888889999999998888888776654

Note that many members are hypothetical proteins.

>KOG3810|consensus

Probab=93.73  E-value=0.41  Score=46.65  Aligned_cols=80  Identities=18%  Similarity=0.142  Sum_probs=65.4

Q ss_pred             HHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccc
Q psy13410         78 FCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDF  157 (493)
Q Consensus        78 ~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~  157 (493)
                      .-.+.++-.+.=.+.|-.--||+++.-.+...+...+.-+.++.+.+=+.-++-|...+ ...+-++|+-+..+++++..
T Consensus        52 TYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqr  130 (433)
T KOG3810|consen   52 TYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKR  130 (433)
T ss_pred             hHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHH
Confidence            44455556666678999999999999999999999999999999999999999998764 55678889999999886633


Q ss_pred             c
Q psy13410        158 D  158 (493)
Q Consensus       158 ~  158 (493)
                      +
T Consensus       131 v  131 (433)
T KOG3810|consen  131 V  131 (433)
T ss_pred             H
Confidence            3

>KOG2816|consensus

Probab=92.29  E-value=4.3  Score=42.00  Aligned_cols=117  Identities=14%  Similarity=0.171  Sum_probs=88.7

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhh-hhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFG-WVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLS  134 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g-~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~  134 (493)
                      +...+++   +..+.+...+....-..+++++.. .+...+|-|++...++....+..++.+++++.|+.+....+.++.
T Consensus       268 l~~~f~w---~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~  344 (463)
T KOG2816|consen  268 LKAKFGW---NKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA  344 (463)
T ss_pred             EeeecCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh
Confidence            5566666   666777666776666677777766 788889999999999999999999999999999999999998886


Q ss_pred             ccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410        135 FDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV  188 (493)
Q Consensus       135 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~  188 (493)
                       +...+..-+.++-+..++++            |..++...+.-.+...+.+..
T Consensus       345 -~~~~pa~~s~~s~~v~~~e~------------g~v~~~is~i~~l~~~~~~~~  385 (463)
T KOG2816|consen  345 -GIVFPAIRAFASILVSPEEQ------------GKVFGIISGIEGLSGVVSPAL  385 (463)
T ss_pred             -cchhHHHHhHHHhhcccccc------------cchhhHHHHHHHHhhhhhHHH
Confidence             57778888888888888644            455555555544444444444

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=90.95  E-value=0.71  Score=46.36  Aligned_cols=94  Identities=11%  Similarity=0.143  Sum_probs=69.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhc---cc------HHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccc
Q psy13410         99 PALVLTNLVGFIFGVITAFT---KS------FWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGR  169 (493)
Q Consensus        99 ~~l~~~~~~~~i~~~~~a~a---~s------~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~  169 (493)
                      ++++++.++..+|.++..++   ++      .+.++++-++.++|.|+.=+......+|-++++.+         ..+-+
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---------~~~~~   72 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---------SRRDS   72 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---------THHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---------hhhhh
Confidence            46778888888888884432   22      36789999999999999999999999999998754         46666


Q ss_pred             hhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhh
Q psy13410        170 YQKVLFFSMILFAFAEAFV---------YFSQIFITVIPEH  201 (493)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~---------w~~~~~~~~i~~~  201 (493)
                      ++..+..+..+|+.++...         |...|.++.+..+
T Consensus        73 ~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~  113 (372)
T PF00854_consen   73 FFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML  113 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence            7777777777777766544         7777766554433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK03612 spermidine synthase; Provisional

Probab=90.63  E-value=2.2  Score=44.90  Aligned_cols=114  Identities=11%  Similarity=0.004  Sum_probs=63.3

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHH-HHH-HHHHHHHhcc-----cHHHHHHHHHHHhhcccch
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNL-VGF-IFGVITAFTK-----SFWQFALCRFFVGLSFDNC  138 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~-~~~-i~~~~~a~a~-----s~~~l~~~R~l~Gi~~g~~  138 (493)
                      +....+.+.+++++|+++|+.+.+.+.++.-|+...+-..+ +.+ ++..+...+.     ....++..-++.|+-.|+.
T Consensus        48 s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~  127 (521)
T PRK03612         48 SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGME  127 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567899999999999999999988744333332221111 111 1111111111     1122344556778888888


Q ss_pred             hhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410        139 FTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV  188 (493)
Q Consensus       139 ~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~  188 (493)
                      .|....+..+....+..         ...|...+.-..|..+|+++.+.+
T Consensus       128 ~Pl~~~~~~~~~~~~~g---------~~~g~ly~~ntlGa~~G~l~~~~v  168 (521)
T PRK03612        128 IPLLMRILQRIRDQHLG---------HNVATVLAADYLGALVGGLAFPFL  168 (521)
T ss_pred             HHHHHHHHHhccccchh---------hhhhhhHhHHhHHHHHHHHHHHHH
Confidence            88777766554331111         245556666666666666665555

>KOG3762|consensus

Probab=90.54  E-value=0.23  Score=51.18  Aligned_cols=87  Identities=11%  Similarity=0.077  Sum_probs=78.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN  483 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  483 (493)
                      .-|.+.+....+.++..++.+++.+|+|+-+++..++...++=++.+.+..|+|..+..-++-|+..+..+.++..|++.
T Consensus       407 LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~  486 (618)
T KOG3762|consen  407 LFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASH  486 (618)
T ss_pred             eeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556666778888889999999999999999999999988888888899999999999999999999999999999999


Q ss_pred             ccCCCCc
Q psy13410        484 RKPFPGC  490 (493)
Q Consensus       484 ~~p~~~~  490 (493)
                      ..|++.+
T Consensus       487 vaPp~l~  493 (618)
T KOG3762|consen  487 VAPPGLR  493 (618)
T ss_pred             hCCCcch
Confidence            9999865

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=89.76  E-value=1.3  Score=47.89  Aligned_cols=85  Identities=13%  Similarity=0.027  Sum_probs=64.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhh-cCCchHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHhccccchh
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVVTAFTK--------SFWQFALCRFFVGLSFDNCF  474 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~l~g~~~~~~~  474 (493)
                      .+..+...+....-+..+++|+++|+ +||++.+.++.++..++..++.+..        +....++++.+...|.++.-
T Consensus        24 ~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiK  103 (654)
T TIGR00926        24 TSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIK  103 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccc
Confidence            34445555555566777889999996 6999999999988888877766532        12335567788889999999


Q ss_pred             hhHhhhhhcccCCC
Q psy13410        475 TMMYILETNRKPFP  488 (493)
Q Consensus       475 ~~~~~~~~e~~p~~  488 (493)
                      +...+...|.++++
T Consensus       104 p~vsaf~gdqf~~~  117 (654)
T TIGR00926       104 PCVSAFGGDQFEER  117 (654)
T ss_pred             cCchhhhHhhcCcc
Confidence            99999999988754

>KOG2563|consensus

Probab=86.19  E-value=5.5  Score=40.48  Aligned_cols=50  Identities=20%  Similarity=0.409  Sum_probs=43.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT  453 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~  453 (493)
                      ++-|...++.+..++-.+.+.|+.||+|-|....++.++.+++..+-..+
T Consensus        80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~is  129 (480)
T KOG2563|consen   80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLIS  129 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc
Confidence            56677888888999999999999999999999999999988888776553

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=84.50  E-value=0.35  Score=47.27  Aligned_cols=83  Identities=11%  Similarity=0.053  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhhc-CCchHHHHHH--HHHHHHHHHHH----------hhhhHHHHHHHHHHHhccccch
Q psy13410        407 WAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTN--LVGFIFGVVTA----------FTKSFWQFALCRFFVGLSFDNC  473 (493)
Q Consensus       407 ~~~~~~~i~~~ig~~~~g~l~Dr~-Grr~~l~~~~--~~~~i~~~~~~----------~~~~~~~~~~~~~l~g~~~~~~  473 (493)
                      .....++++..+|..+.++..=+. .+|++.....  ++.....+.+.          +.++-+..++..+++|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            345678999999999888643211 3443333211  11111111111          1234455677788999999999


Q ss_pred             hhhHhhhhhcccCCCC
Q psy13410        474 FTMMYILETNRKPFPG  489 (493)
Q Consensus       474 ~~~~~~~~~e~~p~~~  489 (493)
                      .+....+.++..+++-
T Consensus       266 ~tl~m~~~p~~v~~~e  281 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEE  281 (309)
T ss_dssp             -HHHH-----------
T ss_pred             hhceeeeCCCcCCHHH
Confidence            9999999999887543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3880|consensus

Probab=80.19  E-value=61  Score=31.59  Aligned_cols=62  Identities=21%  Similarity=0.109  Sum_probs=44.0

Q ss_pred             HHHHHhhhhhhhhhhccc--CChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhh
Q psy13410         78 FCGAIVGGLVFGWVADRF--GRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTM  141 (493)
Q Consensus        78 ~lg~~ig~~i~g~l~Dr~--GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~  141 (493)
                      .+-..+-.+-+..+.||+  |.|..  +..++.+.+-++.++++|.++=+.+-.+..++.|.....
T Consensus        72 ilPsL~iKl~~Pff~~rfpf~~Ri~--~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiT  135 (409)
T KOG3880|consen   72 ILPSLAIKLTAPFFIHRFPFGFRIA--LVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEIT  135 (409)
T ss_pred             hhHHHHHHHhchhhhhhcccchHHH--HHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceee
Confidence            344455566666777775  66654  445566777788899999999999999988887755443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	493
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-04
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-04
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	3e-04
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	3e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 5/64 (7%)

Query: 410 AFFFCGAIVGGLVFGWVADRFG-RV---PALVLTNLVGFIFGVVTAFTKSFWQFALCRFF 465
                       + G V+DR   RV     L+L   V    G V   T S     +  F 
Sbjct: 70  GISIAYGF-SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 128

Query: 466 VGLS 469
            G  
Sbjct: 129 CGWF 132

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 5/64 (7%)

Query: 75  AFFFCGAIVGGLVFGWVADRFG-RV---PALVLTNLVGFIFGVITAFTKSFWQFALCRFF 130
                       + G V+DR   RV     L+L   V    G +   T S     +  F 
Sbjct: 70  GISIAYGF-SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 128

Query: 131 VGLS 134
            G  
Sbjct: 129 CGWF 132

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 390 TIATELN--WVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG 447
            +A +LN      Q  +       +     V  L +G ++DR GR P + L  +  F+  
Sbjct: 25  DMARDLNVREGAVQSVMGA-----YLLTYGVSQLFYGPISDRVGRRPVI-LVGMSIFMLA 78

Query: 448 -VVTAFTKSFWQFALCRFFVGLS 469
            +V   T S           G+ 
Sbjct: 79  TLVAVTTSSLTVLIAASAMQGMG 101

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 66  QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG-VITAFTKSFWQF 124
           Q  +       +     V  L +G ++DR GR P + L  +  F+   ++   T S    
Sbjct: 38  QSVMGA-----YLLTYGVSQLFYGPISDRVGRRPVI-LVGMSIFMLATLVAVTTSSLTVL 91

Query: 125 ALCRFFVGLS 134
                  G+ 
Sbjct: 92  IAASAMQGMG 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	493
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.9
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.88
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.84
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.83
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.7
2xut_A	524	Proton/peptide symporter family protein; transport	99.64
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.77
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.56
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.45
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.33
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.26
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.22
2xut_A	524	Proton/peptide symporter family protein; transport	98.17

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=7.1e-29  Score=257.26  Aligned_cols=157  Identities=19%  Similarity=0.295  Sum_probs=129.0

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHH------------------hcccHHHHHHHH
Q psy13410         67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITA------------------FTKSFWQFALCR  128 (493)
Q Consensus        67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a------------------~a~s~~~l~~~R  128 (493)
                      +.+.+++++++++|..+|++++|+++||+|||++++++.+++.+++++++                  +++|+++++++|
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R  133 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR  133 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999                  478999999999


Q ss_pred             HHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHH--------------HHHHHHH
Q psy13410        129 FFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF--------------VYFSQIF  194 (493)
Q Consensus       129 ~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~--------------~w~~~~~  194 (493)
                      +++|+|.|+..+++.++++|++|+++|         +..+...+.....+.+.+.....              .||+.+.
T Consensus       134 ~l~G~g~G~~~~~~~~~i~E~~p~~~r---------g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (491)
T 4gc0_A          134 IIGGIGVGLASMLSPMYIAELAPAHIR---------GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA  204 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCGGGH---------HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHhh---------hhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence            999999999999999999999999988         44444444444444433333222              2777766


Q ss_pred             HHHHhhh----hheeccCCCchhhhhhccCHHHHHHHHHHHhcc
Q psy13410        195 ITVIPEH----YWCRVPELSHLDYADKEESHEEADTIAESYIKR  234 (493)
Q Consensus       195 ~~~i~~~----~~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~  234 (493)
                      ...++.+    ..+++|||||  |+..+++.+++.+.+++....
T Consensus       205 ~~~~~~~~~~~~~~~~peSp~--~L~~~~~~~~a~~~l~~~~~~  246 (491)
T 4gc0_A          205 SECIPALLFLMLLYTVPESPR--WLMSRGKQEQAEGILRKIMGN  246 (491)
T ss_dssp             TTHHHHHHHHHHGGGSCCCHH--HHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhcCCCChH--HHHHcCchhHHHHhHHHhcCC
Confidence            6555544    3678999999  999999999999988877554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.90  E-value=2.2e-22  Score=205.00  Aligned_cols=99  Identities=9%  Similarity=0.075  Sum_probs=94.0

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHh
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVIT---AFTKSFWQFALCRFFVG  132 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~---a~a~s~~~l~~~R~l~G  132 (493)
                      +.+++++   +..+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.++.   +++++++.++++|+++|
T Consensus        52 ~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  128 (438)
T 3o7q_A           52 FQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA  128 (438)
T ss_dssp             HHHHSCC---CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            7788887   77889999999999999999999999999999999999999999999999   88999999999999999


Q ss_pred             hcccchhhhhhhhccccccccCccc
Q psy13410        133 LSFDNCFTMMYILGMPIYKTRNLDF  157 (493)
Q Consensus       133 i~~g~~~~~~~~~i~e~~~~~~R~~  157 (493)
                      ++.|...+...+++.|++|+++|+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~r~~  153 (438)
T 3o7q_A          129 AGLGCLETAANPFVTVLGPESSGHF  153 (438)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSTTHHH
T ss_pred             hhHHHhhhhHHHHHHHHcCchhHHH
Confidence            9999999999999999999987743

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.88  E-value=2.4e-22  Score=205.41  Aligned_cols=306  Identities=12%  Similarity=0.100  Sum_probs=192.4

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHH
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF----TKSFWQFALCRFFV  131 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~----a~s~~~l~~~R~l~  131 (493)
                      +.+++ .   +..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++    ++|++.++++|+++
T Consensus        54 ~~~~~-~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  129 (451)
T 1pw4_A           54 LVEQG-F---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC  129 (451)
T ss_dssp             TTSST-T---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHH
T ss_pred             HHHHh-c---cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence            56666 5   7778999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             hhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHH-----HH-HHHHHHHHHHhh-----
Q psy13410        132 GLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEA-----FV-YFSQIFITVIPE-----  200 (493)
Q Consensus       132 Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~-----~~-w~~~~~~~~i~~-----  200 (493)
                      |++.|...+...+++.|++|+++|+.+...        .......+..++..+.+     .. ||..+++.++..     
T Consensus       130 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~--------~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~  201 (451)
T 1pw4_A          130 GWFQGMGWPPCGRTMVHWWSQKERGGIVSV--------WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL  201 (451)
T ss_dssp             HHHHHHTHHHHHHHHHTTCTTTHHHHHHHH--------HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred             HHHhhhccchHHHHHHHHCCchhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999877433322        11112222222222222     22 776665544322     


Q ss_pred             hhheeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhc
Q psy13410        201 HYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENL  280 (493)
Q Consensus       201 ~~~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  280 (493)
                      +.++.+||+|+  ....+...                  +..+..++     +. ++. +++....++...++  .++  
T Consensus       202 ~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~-----~~-~~~-~~~~~~~~~~~~~~--~~~--  250 (451)
T 1pw4_A          202 FAFAMMRDTPQ--SCGLPPIE------------------EYKNDYPD-----DY-NEK-AEQELTAKQIFMQY--VLP--  250 (451)
T ss_dssp             HHHHHCCCSST--TTCCCSCT------------------TTCCC--------------------CCTHHHHHH--TSS--
T ss_pred             HHHhhccCCHh--hcCCCChh------------------hhcccccc-----cc-hhh-hhcccccccchHHH--HHc--
Confidence            22467888876  21110000                  00000000     00 000 00000000000111  221  


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeeccccccc
Q psy13410        281 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLG  360 (493)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~  360 (493)
                         .+.    +....+..+......+.  +..+.|.                                            
T Consensus       251 ---~~~----~~~~~~~~~~~~~~~~~--~~~~~~~--------------------------------------------  277 (451)
T 1pw4_A          251 ---NKL----LWYIAIANVFVYLLRYG--ILDWSPT--------------------------------------------  277 (451)
T ss_dssp             ---CHH----HHHHHHHHHHHHHHHHH--HHHHHHH--------------------------------------------
T ss_pred             ---CHH----HHHHHHHHHHHHHHHHH--HHHHHHH--------------------------------------------
Confidence               111    11122222222222222  1222221                                            


Q ss_pred             CCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhc--CCchHHHH
Q psy13410        361 SGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF--GRVPALVL  438 (493)
Q Consensus       361 ~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~--Grr~~l~~  438 (493)
                                          |-         ...+++   +..+.++..++..++.+++.++.|+++||+  |||+.+..
T Consensus       278 --------------------~~---------~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  325 (451)
T 1pw4_A          278 --------------------YL---------KEVKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  325 (451)
T ss_dssp             --------------------HB---------TTBSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             --------------------HH---------HHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence                                00         000011   233678889999999999999999999999  99999888


Q ss_pred             HHHHHH-HHHHHHHhh--hhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410        439 TNLVGF-IFGVVTAFT--KSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG  489 (493)
Q Consensus       439 ~~~~~~-i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~  489 (493)
                      +..+.. ++.+++.+.  .+.....+..++.|++.+...+....++.|.+|++-
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (451)
T 1pw4_A          326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA  379 (451)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh
Confidence            777666 555555554  366677778888899888888999999999999863

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.84  E-value=2.6e-20  Score=192.80  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=90.2

Q ss_pred             ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhccc
Q psy13410         58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFD  136 (493)
Q Consensus        58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g  136 (493)
                      +|++.   +..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.|
T Consensus        47 ~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  123 (491)
T 4aps_A           47 GDLHI---TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTG  123 (491)
T ss_dssp             TSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHH
T ss_pred             hhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            33776   77889999999999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhccccccccCc
Q psy13410        137 NCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       137 ~~~~~~~~~i~e~~~~~~R  155 (493)
                      ...+...++++|++|+++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~  142 (491)
T 4aps_A          124 FLKPNVSTLVGTLYDEHDR  142 (491)
T ss_dssp             HHHHHHHHHHHHHSSSCTT
T ss_pred             hccchHHHHHHHHcCcccc
Confidence            9999999999999999875

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.83  E-value=4.7e-20  Score=184.01  Aligned_cols=145  Identities=15%  Similarity=0.179  Sum_probs=112.8

Q ss_pred             ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410         56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF  135 (493)
Q Consensus        56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~  135 (493)
                      +.++++.   +..+.+++.+++.++..++++++|+++||+|||++++.+.++..++.++.+++++++.+++.|+++|++.
T Consensus        26 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~  102 (375)
T 2gfp_A           26 MARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT  102 (375)
T ss_dssp             HHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            6677777   7778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhh-----hhee
Q psy13410        136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF-----VYFSQIFITVIPEH-----YWCR  205 (493)
Q Consensus       136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~-----~w~~~~~~~~i~~~-----~~~~  205 (493)
                      +...+...+++.|++|+++|+.....        .......+..++..+.+.     .||..+.+..+..+     ..+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (375)
T 2gfp_A          103 GVGGVMARTLPRDLYERTQLRHANSL--------LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARW  174 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCSHHHH--------HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred             HhhhhhHHHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999877332211        111122222333333322     28887766544332     2456


Q ss_pred             ccCCCc
Q psy13410        206 VPELSH  211 (493)
Q Consensus       206 ~pesp~  211 (493)
                      +||+++
T Consensus       175 ~~~~~~  180 (375)
T 2gfp_A          175 MPETRP  180 (375)
T ss_dssp             SCCCST
T ss_pred             CcccCC
Confidence            777764

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.70  E-value=6.3e-18  Score=171.45  Aligned_cols=86  Identities=9%  Similarity=-0.023  Sum_probs=68.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN  483 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  483 (493)
                      ..++...+..++.+++.++.|+++||+|||+.+..+.++.++..+...+.++...+++..++.+++.+...+....++.|
T Consensus       260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (417)
T 2cfq_A          260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS  339 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677778888899999999999999999999988888887777666666676666666666676665666677889999


Q ss_pred             ccCCCC
Q psy13410        484 RKPFPG  489 (493)
Q Consensus       484 ~~p~~~  489 (493)
                      .+|++.
T Consensus       340 ~~p~~~  345 (417)
T 2cfq_A          340 QFEVRF  345 (417)
T ss_dssp             HSCHHH
T ss_pred             HCCHHH
Confidence            999754

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.64  E-value=5.4e-16  Score=161.74  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=87.2

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHhhcccchhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVITAFTK-SFWQFALCRFFVGLSFDNCFTMMY  143 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~a~a~-s~~~l~~~R~l~Gi~~g~~~~~~~  143 (493)
                      +..+.+++.+++.++..++++++|+++||+ |||+++..+.++.+++.++.++++ +++.+++.|+++|++.|...+...
T Consensus        52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  131 (524)
T 2xut_A           52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS  131 (524)
T ss_dssp             TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence            677899999999999999999999999999 999999999999999999999999 999999999999999999999999


Q ss_pred             hhccccccccCc
Q psy13410        144 ILGMPIYKTRNL  155 (493)
Q Consensus       144 ~~i~e~~~~~~R  155 (493)
                      +++.|++|+++|
T Consensus       132 ~~~~~~~~~~~r  143 (524)
T 2xut_A          132 SFMGDQFDQSNK  143 (524)
T ss_dssp             HHHHHTCSTTTT
T ss_pred             HHHHHHcCccch
Confidence            999999999887

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.77  E-value=1.2e-08  Score=104.76  Aligned_cols=88  Identities=24%  Similarity=0.349  Sum_probs=81.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHH
Q psy13410        403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTA------------------FTKSFWQFALCRF  464 (493)
Q Consensus       403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~~  464 (493)
                      ...+++.+.+.+|.++|++++|+++||+|||+.+.++.++..++.++.+                  ++++...++++++
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~  134 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI  134 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence            3578888999999999999999999999999999999999999988887                  4678999999999


Q ss_pred             HHhccccchhhhHhhhhhcccCCCCc
Q psy13410        465 FVGLSFDNCFTMMYILETNRKPFPGC  490 (493)
Q Consensus       465 l~g~~~~~~~~~~~~~~~e~~p~~~~  490 (493)
                      +.|++.++..+..++|++|..|++-|
T Consensus       135 l~G~g~G~~~~~~~~~i~E~~p~~~r  160 (491)
T 4gc0_A          135 IGGIGVGLASMLSPMYIAELAPAHIR  160 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHhh
Confidence            99999999999999999999998654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.56  E-value=2.7e-07  Score=93.10  Aligned_cols=89  Identities=11%  Similarity=0.072  Sum_probs=82.9

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhccccchhhhHh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVT---AFTKSFWQFALCRFFVGLSFDNCFTMMY  478 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~  478 (493)
                      ..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++.   .+.++++.+++++++.|++.+...+...
T Consensus        60 ~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~  139 (438)
T 3o7q_A           60 NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAAN  139 (438)
T ss_dssp             SHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHH
Confidence            4578999999999999999999999999999999999999999998888   7788999999999999999999999999


Q ss_pred             hhhhcccCCCCc
Q psy13410        479 ILETNRKPFPGC  490 (493)
Q Consensus       479 ~~~~e~~p~~~~  490 (493)
                      +++.|.+|++.+
T Consensus       140 ~~~~~~~~~~~r  151 (438)
T 3o7q_A          140 PFVTVLGPESSG  151 (438)
T ss_dssp             HHHHHSSCSTTH
T ss_pred             HHHHHHcCchhH
Confidence            999999998754

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.45  E-value=5e-07  Score=91.37  Aligned_cols=89  Identities=12%  Similarity=-0.052  Sum_probs=82.4

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhccccchhhhH
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF----TKSFWQFALCRFFVGLSFDNCFTMM  477 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~  477 (493)
                      ..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++..+    .++++.+++++++.|++.+...+..
T Consensus        61 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~  140 (451)
T 1pw4_A           61 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC  140 (451)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchH
Confidence            346899999999999999999999999999999999999999999999998    8899999999999999999999999


Q ss_pred             hhhhhcccCCCCc
Q psy13410        478 YILETNRKPFPGC  490 (493)
Q Consensus       478 ~~~~~e~~p~~~~  490 (493)
                      .+++.|.+|++.+
T Consensus       141 ~~~i~~~~~~~~r  153 (451)
T 1pw4_A          141 GRTMVHWWSQKER  153 (451)
T ss_dssp             HHHHHTTCTTTHH
T ss_pred             HHHHHHHCCchhh
Confidence            9999999997643

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.33  E-value=5.8e-07  Score=90.48  Aligned_cols=91  Identities=9%  Similarity=-0.011  Sum_probs=79.0

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhc
Q psy13410         67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILG  146 (493)
Q Consensus        67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i  146 (493)
                      ....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.+++++.+.+++..++.|++.+...+....++
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34457778888889999999999999999999999999999888888888888999999998899988877778888999


Q ss_pred             cccccccCccc
Q psy13410        147 MPIYKTRNLDF  157 (493)
Q Consensus       147 ~e~~~~~~R~~  157 (493)
                      .|.+|++.|+.
T Consensus       338 ~~~~p~~~~g~  348 (417)
T 2cfq_A          338 TSQFEVRFSAT  348 (417)
T ss_dssp             HHHSCHHHHHH
T ss_pred             HHHCCHHHHHH
Confidence            99999987743

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.26  E-value=1.2e-06  Score=86.43  Aligned_cols=89  Identities=16%  Similarity=0.128  Sum_probs=82.4

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE  481 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  481 (493)
                      ..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+++.+++.|++.+...+....++
T Consensus        34 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~  113 (375)
T 2gfp_A           34 EGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLP  113 (375)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            44789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCc
Q psy13410        482 TNRKPFPGC  490 (493)
Q Consensus       482 ~e~~p~~~~  490 (493)
                      .|.+|++.+
T Consensus       114 ~~~~~~~~~  122 (375)
T 2gfp_A          114 RDLYERTQL  122 (375)
T ss_dssp             HHHHHTSSC
T ss_pred             HHHCCHHHH
Confidence            999986544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.22  E-value=1.5e-06  Score=89.12  Aligned_cols=88  Identities=15%  Similarity=0.072  Sum_probs=82.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhh-cCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL  480 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  480 (493)
                      ..+.+++.++..++..++.+++|+++|| +|||+++..+.++.+++.++..++++.+.+++++++.|++.+...+...++
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  132 (491)
T 4aps_A           53 RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTL  132 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence            4578999999999999999999999999 899999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCC
Q psy13410        481 ETNRKPFPG  489 (493)
Q Consensus       481 ~~e~~p~~~  489 (493)
                      +.|.+|++.
T Consensus       133 ~~~~~~~~~  141 (491)
T 4aps_A          133 VGTLYDEHD  141 (491)
T ss_dssp             HHHHSSSCT
T ss_pred             HHHHcCccc
Confidence            999999765

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.17  E-value=4.5e-06  Score=86.33  Aligned_cols=89  Identities=18%  Similarity=0.210  Sum_probs=82.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhc-CCchHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhccccchhhhHhh
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVVTAFTK-SFWQFALCRFFVGLSFDNCFTMMYI  479 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~  479 (493)
                      ..+.+++.++..++.+++.+++|+++||+ |||+.+..+.++.+++.++..+.+ +.+.+++.+++.|++.+...+...+
T Consensus        53 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  132 (524)
T 2xut_A           53 GAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS  132 (524)
T ss_dssp             TTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH
Confidence            44788999999999999999999999999 999999999999999999988888 9999999999999999999999999


Q ss_pred             hhhcccCCCCc
Q psy13410        480 LETNRKPFPGC  490 (493)
Q Consensus       480 ~~~e~~p~~~~  490 (493)
                      ++.|.+|++.+
T Consensus       133 ~~~~~~~~~~r  143 (524)
T 2xut_A          133 FMGDQFDQSNK  143 (524)
T ss_dssp             HHHHTCSTTTT
T ss_pred             HHHHHcCccch
Confidence            99999998655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	493
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	5e-06
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	6e-04
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 46.2 bits (108), Expect = 5e-06
 Identities = 37/386 (9%), Positives = 85/386 (22%), Gaps = 24/386 (6%)

Query: 72  WAQAFFFCGAIVGGLVFGWVADRFGRVP----ALVLTNLVGFIFGVITAFTKSFWQFALC 127
           +A +           + G V+DR          L+L   V    G +   T S     + 
Sbjct: 63  FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 122

Query: 128 RFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF 187
            F  G      +       +  +  +                +         +       
Sbjct: 123 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGI--------VSVWNCAHNVGGGIPPLLFLL 174

Query: 188 VYFSQIFITVIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPR 247
                                ++   +A   ++ +          K ++  D        
Sbjct: 175 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQE 234

Query: 248 SSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFS 307
            +      +  L ++ L    +  V                          + +   +F+
Sbjct: 235 LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY-----------GILDWSPTYLKEVKHFA 283

Query: 308 QIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKAD 367
               +     Y       + L       +     GA            T +         
Sbjct: 284 LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNP 343

Query: 368 PSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAF-FFCGAIVGGLVFGWV 426
               I     G+      +     A EL       T + +   F +  G++    + G+ 
Sbjct: 344 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 403

Query: 427 ADRFGRVPALVLTNLVGFIFGVVTAF 452
            D FG     ++      +  ++   
Sbjct: 404 VDFFGWDGGFMVMIGGSILAVILLIV 429

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 4/78 (5%)

Query: 407 WAQAFFFCGAIVGGLVFGWVADRFGRVP----ALVLTNLVGFIFGVVTAFTKSFWQFALC 462
           +A +           + G V+DR          L+L   V    G V   T S     + 
Sbjct: 63  FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 122

Query: 463 RFFVGLSFDNCFTMMYIL 480
            F  G      +      
Sbjct: 123 LFLCGWFQGMGWPPCGRT 140

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 36/383 (9%), Positives = 89/383 (23%), Gaps = 31/383 (8%)

Query: 72  WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFV 131
              A     +++   +FG ++D+ G    L+       +                     
Sbjct: 47  IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106

Query: 132 GLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFS 191
            +         +  G P  +                    +     M             
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEAFIEKV--------SRRSNFEFGRARMFGCVGWALGASIV 158

Query: 192 QIFITVIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTH 251
            I  T+  +  +      + +              +A                +     +
Sbjct: 159 GIMFTINNQFVFWLGSGCALI--------------LAVLLFFAKTDAPSSATVANAVGAN 204

Query: 252 GSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFI 311
            S     L      +  + F++         +  + +        F            ++
Sbjct: 205 HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYV 264

Query: 312 TVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWP 371
           T + E     +   + L   +    +   +     S R+   ++                
Sbjct: 265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSA--------LEVV 316

Query: 372 IVECQHGWDYDHSDIPYTTIATELNWVCTQDT-LSTWAQAFFFCGAIVGGLVFGWVADRF 430
           I++  H ++     +      T    V    T        F     I   ++ G + +  
Sbjct: 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376

Query: 431 GRVPALVLTNLVGFIFGVVTAFT 453
           G   A ++  LV   F +++ FT
Sbjct: 377 GFQGAYLVLGLVALGFTLISVFT 399

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	493
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.73
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.43
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.43

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=6e-23  Score=206.68  Aligned_cols=95  Identities=11%  Similarity=-0.005  Sum_probs=88.6

Q ss_pred             ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHhh
Q psy13410         58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK----SFWQFALCRFFVGL  133 (493)
Q Consensus        58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~----s~~~l~~~R~l~Gi  133 (493)
                      .|+++   +..+.+++.+++.++.+++++++|+++||+|||+++.++.++.+++.+++++++    +++.+++.|++.|+
T Consensus        52 ~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  128 (447)
T d1pw4a_          52 VEQGF---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW  128 (447)
T ss_dssp             TSSTT---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH
T ss_pred             HHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Confidence            45677   788899999999999999999999999999999999999999999999998874    78899999999999


Q ss_pred             cccchhhhhhhhccccccccCc
Q psy13410        134 SFDNCFTMMYILGMPIYKTRNL  155 (493)
Q Consensus       134 ~~g~~~~~~~~~i~e~~~~~~R  155 (493)
                      +.|...+....++.|++|+++|
T Consensus       129 ~~~~~~~~~~~~i~~~~~~~~r  150 (447)
T d1pw4a_         129 FQGMGWPPCGRTMVHWWSQKER  150 (447)
T ss_dssp             HHHHTHHHHHHHHHTTCTTTHH
T ss_pred             hhhhhhhHHHHHHHHHHHhhcc
Confidence            9999999999999999999866

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=5.3e-17  Score=159.54  Aligned_cols=87  Identities=9%  Similarity=-0.022  Sum_probs=79.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410        404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN  483 (493)
Q Consensus       404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  483 (493)
                      ..+.......++..++..+.+++.||+|||+.+..+.++.+++.+...+.++.+..++..++.|++.+...+...+++.|
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  339 (417)
T d1pv7a_         260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS  339 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCc
Q psy13410        484 RKPFPGC  490 (493)
Q Consensus       484 ~~p~~~~  490 (493)
                      .+|++.+
T Consensus       340 ~~~~~~~  346 (417)
T d1pv7a_         340 QFEVRFS  346 (417)
T ss_dssp             HSCGGGH
T ss_pred             HCCHhHH
Confidence            9998643

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=2.6e-07  Score=88.84  Aligned_cols=92  Identities=9%  Similarity=-0.014  Sum_probs=85.2

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410         66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL  145 (493)
Q Consensus        66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~  145 (493)
                      +....+...+...++..++.++.+++.||+|||+++..+.++.+++.++.++.++.+.+++.-++.|++.+...+...++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  336 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            44567778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCccc
Q psy13410        146 GMPIYKTRNLDF  157 (493)
Q Consensus       146 i~e~~~~~~R~~  157 (493)
                      +.|.+|++.|+.
T Consensus       337 ~~~~~~~~~~~~  348 (417)
T d1pv7a_         337 ITSQFEVRFSAT  348 (417)
T ss_dssp             HHHHSCGGGHHH
T ss_pred             HHHHCCHhHHHH
Confidence            999999987743

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=3.5e-07  Score=89.63  Aligned_cols=89  Identities=11%  Similarity=-0.062  Sum_probs=79.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHhccccchhhhH
Q psy13410        402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT----KSFWQFALCRFFVGLSFDNCFTMM  477 (493)
Q Consensus       402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~  477 (493)
                      ..+.|++.+++.++..++.+++|+++||+|||+.+..+.++.+++.++.++.    .+...+++.+++.|++.+...+..
T Consensus        58 ~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  137 (447)
T d1pw4a_          58 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC  137 (447)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHH
Confidence            4478999999999999999999999999999999999999988888887765    366778889999999999999999


Q ss_pred             hhhhhcccCCCCc
Q psy13410        478 YILETNRKPFPGC  490 (493)
Q Consensus       478 ~~~~~e~~p~~~~  490 (493)
                      ..++.|.+|++.|
T Consensus       138 ~~~i~~~~~~~~r  150 (447)
T d1pw4a_         138 GRTMVHWWSQKER  150 (447)
T ss_dssp             HHHHHTTCTTTHH
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999998644