Psyllid ID: psy13414

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
MMINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGNDH
ccEEEccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccEEccHHHHHHHHccccccccEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHccEEEccccccccccccccccccc
cccccccEEccEEcHHHcEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHccccccEEEEcccccEEEEccHHHHcHHHHccHHHHccccccHHHHHHHHHHcccHHHHHHHHHcEEEEcccccccccEEEEEcccc
MMINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAassssleksyelpdgqvitignerfrcpealfqpaflgmeacgihettynsimkcdvdirkdlyaNTVLSGVLFilekpnlyifgndh
MMINTSSLITSYALPHAILRLDLAGRDLTDYLMKILtergysftttaeREIVRDIKEKLCYVALDFEQEMATAassssleksyeLPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGvlfilekpnlyifgndh
MMINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGNDH
*******LITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ****************LPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFG***
MMINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ*************SYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFG***
MMINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM************YELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGNDH
***NTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGND*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGNDH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query161 2.2.26 [Sep-21-2011]
P84185376 Actin-5C OS=Anopheles gam yes N/A 0.875 0.375 0.943 8e-75
P84183376 Actin, cytoplasmic A4 OS= N/A N/A 0.875 0.375 0.943 8e-75
P84184376 Actin-A3b, cytoplasmic OS N/A N/A 0.875 0.375 0.943 8e-75
P10987376 Actin-5C OS=Drosophila me yes N/A 0.875 0.375 0.943 8e-75
O93400375 Actin, cytoplasmic 1 OS=X N/A N/A 0.875 0.376 0.936 2e-74
Q6NVA9375 Actin, cytoplasmic 1 OS=X yes N/A 0.875 0.376 0.936 2e-74
P02572376 Actin-42A OS=Drosophila m yes N/A 0.875 0.375 0.936 2e-74
P18603376 Actin, clone 403 OS=Artem N/A N/A 0.875 0.375 0.929 4e-74
A2BDB0375 Actin, cytoplasmic 2 OS=X N/A N/A 0.875 0.376 0.929 4e-74
P63257375 Actin, cytoplasmic 2 OS=T N/A N/A 0.875 0.376 0.929 4e-74
>sp|P84185|ACT5C_ANOGA Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1 Back     alignment and function desciption
 Score =  278 bits (712), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 133/141 (94%), Positives = 136/141 (96%)

Query: 4   NTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA 63
           +T  +   YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA
Sbjct: 162 HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA 221

Query: 64  LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYN 123
           LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP+FLGMEACGIHETTYN
Sbjct: 222 LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYN 281

Query: 124 SIMKCDVDIRKDLYANTVLSG 144
           SIMKCDVDIRKDLYANTVLSG
Sbjct: 282 SIMKCDVDIRKDLYANTVLSG 302
Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Multiple isoforms are involved in various cellular functions such as cytoskeleton structure, cell mobility, chromosome movement and muscle contraction.
Anopheles gambiae (taxid: 7165)
>sp|P84183|ACT4_BOMMO Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV=1 Back     alignment and function description
>sp|P84184|ACT3B_HELAM Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=actA3b PE=2 SV=1 Back     alignment and function description
>sp|P10987|ACT1_DROME Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 SV=4 Back     alignment and function description
>sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 OS=Xenopus laevis GN=actb PE=2 SV=1 Back     alignment and function description
>sp|Q6NVA9|ACTB_XENTR Actin, cytoplasmic 1 OS=Xenopus tropicalis GN=actb PE=2 SV=1 Back     alignment and function description
>sp|P02572|ACT2_DROME Actin-42A OS=Drosophila melanogaster GN=Act42A PE=1 SV=3 Back     alignment and function description
>sp|P18603|ACT4_ARTSX Actin, clone 403 OS=Artemia sp. PE=2 SV=1 Back     alignment and function description
>sp|A2BDB0|ACTG_XENLA Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE=2 SV=1 Back     alignment and function description
>sp|P63257|ACTG_TRIVU Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=ACTG1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query161
390479776 1221 PREDICTED: uncharacterized protein LOC10 0.875 0.115 0.929 7e-74
17980574 317 actin 1 [Culicoides sonorensis] 0.875 0.444 0.943 2e-73
241157545 335 actin, putative [Ixodes scapularis] gi|2 0.875 0.420 0.943 2e-73
242017787 372 Actin-5C [Pediculus humanus corporis] gi 0.875 0.379 0.943 3e-73
109729854 376 actin [Aedes albopictus] 0.875 0.375 0.943 3e-73
312381728 294 hypothetical protein AND_05903 [Anophele 0.875 0.479 0.943 3e-73
226511676 274 actin 5c [Rhodnius prolixus] 0.875 0.514 0.943 3e-73
297591985 376 actin related protein 1 [Apis mellifera] 0.875 0.375 0.943 4e-73
301298995 376 actin related protein 1 [Apis cerana cer 0.875 0.375 0.943 4e-73
17530805 376 actin 5C, isoform B [Drosophila melanoga 0.875 0.375 0.943 4e-73
>gi|390479776|ref|XP_002762905.2| PREDICTED: uncharacterized protein LOC100409006 isoform 1 [Callithrix jacchus] Back     alignment and taxonomy information
 Score =  281 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 131/141 (92%), Positives = 136/141 (96%)

Query: 4    NTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA 63
            +T  +   YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA
Sbjct: 1007 HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA 1066

Query: 64   LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYN 123
            LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP+FLGME+CGIHETT+N
Sbjct: 1067 LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN 1126

Query: 124  SIMKCDVDIRKDLYANTVLSG 144
            SIMKCDVDIRKDLYANTVLSG
Sbjct: 1127 SIMKCDVDIRKDLYANTVLSG 1147

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|17980574|gb|AAL50652.1| actin 1 [Culicoides sonorensis] Back     alignment and taxonomy information
>gi|241157545|ref|XP_002408110.1| actin, putative [Ixodes scapularis] gi|215494293|gb|EEC03934.1| actin, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|242017787|ref|XP_002429368.1| Actin-5C [Pediculus humanus corporis] gi|212514277|gb|EEB16630.1| Actin-5C [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|109729854|gb|ABG46341.1| actin [Aedes albopictus] Back     alignment and taxonomy information
>gi|312381728|gb|EFR27409.1| hypothetical protein AND_05903 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|226511676|gb|ACO60321.1| actin 5c [Rhodnius prolixus] Back     alignment and taxonomy information
>gi|297591985|ref|NP_001172074.1| actin related protein 1 [Apis mellifera] gi|297591987|ref|NP_001172075.1| actin related protein 1 [Apis mellifera] gi|380018177|ref|XP_003693012.1| PREDICTED: actin-5C-like [Apis florea] Back     alignment and taxonomy information
>gi|301298995|gb|ADK66839.1| actin related protein 1 [Apis cerana cerana] Back     alignment and taxonomy information
>gi|17530805|ref|NP_511052.1| actin 5C, isoform B [Drosophila melanogaster] gi|24639997|ref|NP_727048.1| actin 5C, isoform A [Drosophila melanogaster] gi|62473515|ref|NP_001014725.1| actin 5C, isoform D [Drosophila melanogaster] gi|62473526|ref|NP_001014726.1| actin 5C, isoform C [Drosophila melanogaster] gi|187109134|ref|NP_001119672.1| actin related protein 1 [Acyrthosiphon pisum] gi|187281844|ref|NP_001119727.1| actin, cytoplasmic A4 [Bombyx mori] gi|288860142|ref|NP_001165843.1| actin related protein 1 [Tribolium castaneum] gi|288860144|ref|NP_001165844.1| actin related protein 1 [Tribolium castaneum] gi|118780938|ref|XP_001230772.1| AGAP000651-PA [Anopheles gambiae str. PEST] gi|125981707|ref|XP_001354857.1| GA17886 [Drosophila pseudoobscura pseudoobscura] gi|157128679|ref|XP_001655175.1| actin [Aedes aegypti] gi|157128681|ref|XP_001655176.1| actin [Aedes aegypti] gi|170048737|ref|XP_001870756.1| conserved hypothetical protein [Culex quinquefasciatus] gi|194889160|ref|XP_001977029.1| GG18797 [Drosophila erecta] gi|195046398|ref|XP_001992145.1| GH24372 [Drosophila grimshawi] gi|195129856|ref|XP_002009370.1| GI15312 [Drosophila mojavensis] gi|195166956|ref|XP_002024300.1| GL14888 [Drosophila persimilis] gi|195340496|ref|XP_002036849.1| GM12447 [Drosophila sechellia] gi|195401955|ref|XP_002059576.1| GJ14747 [Drosophila virilis] gi|195432731|ref|XP_002064370.1| GK20124 [Drosophila willistoni] gi|195480603|ref|XP_002101323.1| Act57B [Drosophila yakuba] gi|195565315|ref|XP_002106247.1| GD16764 [Drosophila simulans] gi|340717023|ref|XP_003396989.1| PREDICTED: actin-5C-like isoform 1 [Bombus terrestris] gi|340717025|ref|XP_003396990.1| PREDICTED: actin-5C-like isoform 2 [Bombus terrestris] gi|340717027|ref|XP_003396991.1| PREDICTED: actin-5C-like isoform 3 [Bombus terrestris] gi|340717029|ref|XP_003396992.1| PREDICTED: actin-5C-like isoform 4 [Bombus terrestris] gi|340717031|ref|XP_003396993.1| PREDICTED: actin-5C-like isoform 5 [Bombus terrestris] gi|347964216|ref|XP_003437049.1| AGAP000651-PB [Anopheles gambiae str. PEST] gi|347964218|ref|XP_003437050.1| AGAP000651-PC [Anopheles gambiae str. PEST] gi|350408712|ref|XP_003488485.1| PREDICTED: actin-5C-like isoform 1 [Bombus impatiens] gi|350408715|ref|XP_003488486.1| PREDICTED: actin-5C-like isoform 2 [Bombus impatiens] gi|350408717|ref|XP_003488487.1| PREDICTED: actin-5C-like isoform 3 [Bombus impatiens] gi|12644115|sp|P10987.4|ACT1_DROME RecName: Full=Actin-5C; Flags: Precursor gi|67462097|sp|P84184.1|ACT3B_HELAM RecName: Full=Actin-A3b, cytoplasmic; Flags: Precursor gi|67462098|sp|P84185.1|ACT5C_ANOGA RecName: Full=Actin-5C; AltName: Full=Actin-1D, cytoplasmic; Flags: Precursor gi|67462113|sp|P84183.1|ACT4_BOMMO RecName: Full=Actin, cytoplasmic A4; Flags: Precursor gi|409700|gb|AAA56882.1| actin 1D [Anopheles gambiae] gi|409703|gb|AAA03444.1| actin 1D [Anopheles gambiae] gi|414284|gb|AAA56881.1| actin 1D [Anopheles gambiae] gi|1296534|emb|CAA66219.1| Cytoplasmic actin A3b [Helicoverpa armigera] gi|1790884|gb|AAC47432.1| actin A4 [Bombyx mori] gi|7290649|gb|AAF46098.1| actin 5C, isoform A [Drosophila melanogaster] gi|19528371|gb|AAL90300.1| RE02927p [Drosophila melanogaster] gi|22831776|gb|AAN09154.1| actin 5C, isoform B [Drosophila melanogaster] gi|52630919|gb|AAU84923.1| putative actin [Toxoptera citricida] gi|54643168|gb|EAL31912.1| GA17886 [Drosophila pseudoobscura pseudoobscura] gi|61677878|gb|AAX52479.1| actin 5C, isoform C [Drosophila melanogaster] gi|61677879|gb|AAX52480.1| actin 5C, isoform D [Drosophila melanogaster] gi|89473786|gb|ABD72705.1| putative actin [Acyrthosiphon pisum] gi|108872510|gb|EAT36735.1| AAEL011197-PA [Aedes aegypti] gi|108872511|gb|EAT36736.1| AAEL011197-PB [Aedes aegypti] gi|116130184|gb|EAU77199.1| AGAP000651-PA [Anopheles gambiae str. PEST] gi|167870742|gb|EDS34125.1| conserved hypothetical protein [Culex quinquefasciatus] gi|190648678|gb|EDV45956.1| GG18797 [Drosophila erecta] gi|193892986|gb|EDV91852.1| GH24372 [Drosophila grimshawi] gi|193907820|gb|EDW06687.1| GI15312 [Drosophila mojavensis] gi|194107673|gb|EDW29716.1| GL14888 [Drosophila persimilis] gi|194130965|gb|EDW53008.1| GM12447 [Drosophila sechellia] gi|194147283|gb|EDW62998.1| GJ14747 [Drosophila virilis] gi|194160455|gb|EDW75356.1| GK20124 [Drosophila willistoni] gi|194188847|gb|EDX02431.1| Act57B [Drosophila yakuba] gi|194203621|gb|EDX17197.1| GD16764 [Drosophila simulans] gi|220947776|gb|ACL86431.1| Act5C-PA [synthetic construct] gi|220957086|gb|ACL91086.1| Act5C-PA [synthetic construct] gi|223976177|gb|ACN32208.1| alpha-actin [Liposcelis bostrychophila] gi|270012185|gb|EFA08633.1| hypothetical protein TcasGA2_TC006296 [Tribolium castaneum] gi|289742461|gb|ADD19978.1| actin 5C [Glossina morsitans morsitans] gi|300085896|gb|ADJ67594.1| actin [Antheraea pernyi] gi|307179404|gb|EFN67734.1| Actin-5C [Camponotus floridanus] gi|307206285|gb|EFN84350.1| Actin-5C [Harpegnathos saltator] gi|308512671|gb|ADO32989.1| cytoplasmic actin A4 [Biston betularia] gi|322803044|gb|EFZ23137.1| hypothetical protein SINV_05150 [Solenopsis invicta] gi|330367405|dbj|BAK19478.1| actin [Gryllus bimaculatus] gi|332027182|gb|EGI67274.1| Actin-5C [Acromyrmex echinatior] gi|333467428|gb|EGK96552.1| AGAP000651-PB [Anopheles gambiae str. PEST] gi|333467429|gb|EGK96553.1| AGAP000651-PC [Anopheles gambiae str. PEST] gi|346987815|gb|AEO51758.1| actin [Bombus hypocrita] gi|346987817|gb|AEO51759.1| actin [Bombus hypocrita] gi|357609052|gb|EHJ66273.1| actin 5C, isoform B [Danaus plexippus] gi|389608515|dbj|BAM17867.1| actin, cytoplasmic A3 [Papilio xuthus] gi|389610647|dbj|BAM18935.1| actin, cytoplasmic A3 [Papilio polytes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query161
FB|FBgn0000042376 Act5C "Actin 5C" [Drosophila m 0.875 0.375 0.943 2.4e-67
FB|FBgn0000043376 Act42A "Actin 42A" [Drosophila 0.875 0.375 0.936 5.1e-67
ZFIN|ZDB-GENE-051030-60376 zgc:123289 "zgc:123289" [Danio 0.875 0.375 0.929 1.1e-66
UNIPROTKB|P60706375 ACTB "Actin, cytoplasmic 1" [G 0.875 0.376 0.929 1.3e-66
UNIPROTKB|Q5ZMQ2375 ACTG1 "Actin, cytoplasmic 2" [ 0.875 0.376 0.929 1.3e-66
UNIPROTKB|F1MRD0375 ACTB "Actin, cytoplasmic 1, N- 0.875 0.376 0.929 1.3e-66
UNIPROTKB|P60712375 ACTB "Actin, cytoplasmic 1" [B 0.875 0.376 0.929 1.3e-66
UNIPROTKB|P63258375 ACTG1 "Actin, cytoplasmic 2" [ 0.875 0.376 0.929 1.3e-66
UNIPROTKB|O18840375 ACTB "Actin, cytoplasmic 1" [C 0.875 0.376 0.929 1.3e-66
UNIPROTKB|I3L3I4383 ACTG1 "Actin, cytoplasmic 2, N 0.875 0.368 0.929 1.3e-66
FB|FBgn0000042 Act5C "Actin 5C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 133/141 (94%), Positives = 136/141 (96%)

Query:     4 NTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA 63
             +T  +   YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA
Sbjct:   162 HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA 221

Query:    64 LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYN 123
             LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP+FLGMEACGIHETTYN
Sbjct:   222 LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYN 281

Query:   124 SIMKCDVDIRKDLYANTVLSG 144
             SIMKCDVDIRKDLYANTVLSG
Sbjct:   282 SIMKCDVDIRKDLYANTVLSG 302
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0005884 "actin filament" evidence=ISS;NAS
GO:0007010 "cytoskeleton organization" evidence=ISS
GO:0007291 "sperm individualization" evidence=IEP
GO:0005524 "ATP binding" evidence=IEA
GO:0000910 "cytokinesis" evidence=IMP
GO:0031011 "Ino80 complex" evidence=IDA
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0032507 "maintenance of protein location in cell" evidence=IMP
GO:0005811 "lipid particle" evidence=IDA
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0016319 "mushroom body development" evidence=IMP
GO:0002121 "inter-male aggressive behavior" evidence=IMP
FB|FBgn0000043 Act42A "Actin 42A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051030-60 zgc:123289 "zgc:123289" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P60706 ACTB "Actin, cytoplasmic 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMQ2 ACTG1 "Actin, cytoplasmic 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MRD0 ACTB "Actin, cytoplasmic 1, N-terminally processed" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P60712 ACTB "Actin, cytoplasmic 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P63258 ACTG1 "Actin, cytoplasmic 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O18840 ACTB "Actin, cytoplasmic 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3L3I4 ACTG1 "Actin, cytoplasmic 2, N-terminally processed" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P84183ACT4_BOMMONo assigned EC number0.94320.87570.375N/AN/A
A2BDB0ACTG_XENLANo assigned EC number0.92900.87570.376N/AN/A
Q6NVA9ACTB_XENTRNo assigned EC number0.93610.87570.376yesN/A
P84185ACT5C_ANOGANo assigned EC number0.94320.87570.375yesN/A
O93400ACTB_XENLANo assigned EC number0.93610.87570.376N/AN/A
P15475ACTB_XENBONo assigned EC number0.92900.87570.375N/AN/A
P84336ACTB_CAMDRNo assigned EC number0.92900.87570.376N/AN/A
Q7ZVF9ACTB2_DANRENo assigned EC number0.92190.87570.376yesN/A
Q5R1X3ACTB_PANTRNo assigned EC number0.92900.87570.376yesN/A
Q8JJB8ACTG_TRISCNo assigned EC number0.92900.87570.376N/AN/A
Q5R6G0ACTB_PONABNo assigned EC number0.92900.87570.376yesN/A
P18603ACT4_ARTSXNo assigned EC number0.92900.87570.375N/AN/A
O42161ACTB_SALSANo assigned EC number0.92900.87570.376N/AN/A
P63256ACTG_ANSANNo assigned EC number0.92900.87570.376N/AN/A
P63257ACTG_TRIVUNo assigned EC number0.92900.87570.376N/AN/A
P60711ACTB_RATNo assigned EC number0.92900.87570.376yesN/A
P53505ACT5_XENLANo assigned EC number0.92900.87570.375N/AN/A
P84184ACT3B_HELAMNo assigned EC number0.94320.87570.375N/AN/A
P63258ACTG_BOVINNo assigned EC number0.92900.87570.376yesN/A
P63259ACTG_RATNo assigned EC number0.92900.87570.376yesN/A
P02572ACT2_DROMENo assigned EC number0.93610.87570.375yesN/A
P83751ACTB_CTEIDNo assigned EC number0.92190.87570.376N/AN/A
P83750ACTB_CYPCANo assigned EC number0.92190.87570.376N/AN/A
P60709ACTB_HUMANNo assigned EC number0.92900.87570.376yesN/A
P60708ACTB_HORSENo assigned EC number0.92900.87570.376yesN/A
P60707ACTB_TRIVUNo assigned EC number0.92900.87570.376N/AN/A
P60706ACTB_CHICKNo assigned EC number0.92900.87570.376yesN/A
P48975ACTB_CRIGRNo assigned EC number0.92900.87570.376yesN/A
Q5ZMQ2ACTG_CHICKNo assigned EC number0.92900.87570.376yesN/A
Q5JAK2ACTG_RANLENo assigned EC number0.92900.87570.376N/AN/A
P29751ACTB_RABITNo assigned EC number0.92900.87570.376yesN/A
Q6P378ACTG_XENTRNo assigned EC number0.92900.87570.376yesN/A
Q4L0Y2ACTB_SPECINo assigned EC number0.92900.87570.376N/AN/A
P10987ACT1_DROMENo assigned EC number0.94320.87570.375yesN/A
Q91ZK5ACTB_SIGHINo assigned EC number0.92900.87570.376N/AN/A
P53478ACT5_CHICKNo assigned EC number0.92190.87570.375yesN/A
Q711N9ACTB_MESAUNo assigned EC number0.92900.87570.376N/AN/A
P60710ACTB_MOUSENo assigned EC number0.92900.87570.376yesN/A
P79818ACTB_ORYLANo assigned EC number0.92900.87570.376N/AN/A
P60712ACTB_BOVINNo assigned EC number0.92900.87570.376yesN/A
P60713ACTB_SHEEPNo assigned EC number0.92900.87570.376N/AN/A
Q4R561ACTB_MACFANo assigned EC number0.92900.87570.376N/AN/A
O18840ACTB_CANFANo assigned EC number0.92900.87570.376yesN/A
Q6QAQ1ACTB_PIGNo assigned EC number0.92900.87570.376yesN/A
P63261ACTG_HUMANNo assigned EC number0.92900.87570.376yesN/A
P63260ACTG_MOUSENo assigned EC number0.92900.87570.376yesN/A
Q71FK5ACTB_CAVPONo assigned EC number0.92900.87570.376yesN/A
Q76N69ACTB_CHLAENo assigned EC number0.92900.87570.376N/AN/A
P68143ACTB_OREMONo assigned EC number0.92900.87570.376N/AN/A
P68142ACTB1_TAKRUNo assigned EC number0.92900.87570.376N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 1e-91
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 8e-73
pfam00022367 pfam00022, Actin, Actin 2e-68
smart00268373 smart00268, ACTIN, Actin 2e-67
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 1e-43
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 1e-39
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 7e-30
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 9e-20
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information 
 Score =  270 bits (692), Expect = 1e-91
 Identities = 124/141 (87%), Positives = 130/141 (92%)

Query: 4   NTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA 63
           +T  +   YALPHAILRLDLAGRDLTDY+MKILTERGYSFTTTAEREIVRDIKEKL YVA
Sbjct: 162 HTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVA 221

Query: 64  LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYN 123
           LDFE EM TAASSS+LEKSYELPDGQVITIGNERFRCPEALFQP+FLGME+ GIHETTYN
Sbjct: 222 LDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYN 281

Query: 124 SIMKCDVDIRKDLYANTVLSG 144
           SIMKCDVDIRKDLY N VLSG
Sbjct: 282 SIMKCDVDIRKDLYGNVVLSG 302

Length = 376
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 161
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
KOG0676|consensus372 100.0
KOG0677|consensus389 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00004378 actin-2; Provisional 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
KOG0680|consensus400 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
KOG0679|consensus426 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 99.97
KOG0678|consensus415 99.93
KOG0681|consensus645 99.83
PRK13930335 rod shape-determining protein MreB; Provisional 99.64
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.61
PRK13929335 rod-share determining protein MreBH; Provisional 99.59
PRK13927334 rod shape-determining protein MreB; Provisional 99.55
KOG0797|consensus 618 99.47
PRK13928336 rod shape-determining protein Mbl; Provisional 99.28
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.12
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 98.15
COG1077342 MreB Actin-like ATPase involved in cell morphogene 98.12
PRK09472420 ftsA cell division protein FtsA; Reviewed 97.78
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 97.57
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 97.18
PRK15080267 ethanolamine utilization protein EutJ; Provisional 97.01
PRK01433 595 hscA chaperone protein HscA; Provisional 96.38
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 96.27
PRK13411 653 molecular chaperone DnaK; Provisional 95.9
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 95.88
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 95.76
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 95.67
CHL00094 621 dnaK heat shock protein 70 95.57
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 95.48
PRK05183 616 hscA chaperone protein HscA; Provisional 95.4
PLN03184 673 chloroplast Hsp70; Provisional 95.29
PTZ00400 663 DnaK-type molecular chaperone; Provisional 95.28
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 95.14
PTZ00009 653 heat shock 70 kDa protein; Provisional 95.13
PRK13410 668 molecular chaperone DnaK; Provisional 94.38
PRK13917344 plasmid segregation protein ParM; Provisional 90.64
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 89.24
PRK11678450 putative chaperone; Provisional 87.48
>PTZ00452 actin; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.1e-44  Score=285.06  Aligned_cols=158  Identities=42%  Similarity=0.740  Sum_probs=146.0

Q ss_pred             eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414          2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK   81 (161)
Q Consensus         2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~   81 (161)
                      +|+|+||+||++++++++++++||+++|++|+++|.++++++.+..+.+++++|||++|||+.|++++...........+
T Consensus       159 ~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~  238 (375)
T PTZ00452        159 VTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDS  238 (375)
T ss_pred             cceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCc
Confidence            58999999999999999999999999999999999998888777678899999999999999999887764433344567


Q ss_pred             EEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414         82 SYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN  159 (161)
Q Consensus        82 ~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~  159 (161)
                      .|+||||+.|.++.|||++||+||+|+++|.+..||+++|.+||.+||+|+|+.|++||||+||+|++|||.+||.+|
T Consensus       239 ~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~E  316 (375)
T PTZ00452        239 PYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNE  316 (375)
T ss_pred             eEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999865

>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>KOG0676|consensus Back     alignment and domain information
>KOG0677|consensus Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>KOG0680|consensus Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>KOG0679|consensus Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0678|consensus Back     alignment and domain information
>KOG0681|consensus Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>KOG0797|consensus Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 3e-75
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 4e-75
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 5e-75
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 5e-75
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 4e-74
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 5e-74
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 7e-74
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 1e-73
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 4e-72
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 1e-71
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 3e-71
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 3e-71
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 3e-71
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 3e-71
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 3e-71
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 3e-71
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 4e-71
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 4e-71
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 4e-71
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 4e-71
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 4e-71
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 5e-71
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 5e-71
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 5e-71
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 5e-71
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 5e-71
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 6e-71
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 6e-71
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 1e-70
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 1e-70
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 1e-70
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 2e-69
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 1e-68
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 1e-68
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 3e-68
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 3e-65
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 3e-65
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 5e-65
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 6e-65
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 2e-36
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 2e-36
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 1e-10
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 6e-10
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure 
Iteration: 1

 Score =  276 bits (707), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 131/141 (92%), Positives = 136/141 (96%)
Query: 4   NTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA 63
           +T  +   YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA
Sbjct: 156 HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA 215
Query: 64  LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYN 123
           LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP+FLGME+CGIHETT+N
Sbjct: 216 LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN 275
Query: 124 SIMKCDVDIRKDLYANTVLSG 144
           SIMKCDVDIRKDLYANTVLSG
Sbjct: 276 SIMKCDVDIRKDLYANTVLSG 296
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 3e-91
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-88
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 4e-88
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 7e-79
3qb0_A 498 Actin-related protein 4; actin fold, ATP binding, 3e-46
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 1e-33
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
 Score =  269 bits (690), Expect = 3e-91
 Identities = 67/133 (50%), Positives = 91/133 (68%)

Query: 12  YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
           ++LPH   RLD+AGRD+T YL+K+L  RGY+F  +A+ E VR IKEKLCYV  + EQE  
Sbjct: 173 FSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQK 232

Query: 72  TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVD 131
            A  ++ L +SY LPDG++I +G ERF  PEALFQP  + +E  G+ E  +N+I   D+D
Sbjct: 233 LALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADID 292

Query: 132 IRKDLYANTVLSG 144
            R + Y + VLSG
Sbjct: 293 TRSEFYKHIVLSG 305
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query161
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A 655 Actin-like protein ARP8; nuclear protein, chromati 99.93
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.37
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 98.46
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 98.44
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 98.23
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 98.14
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 97.87
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 97.59
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 97.13
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 97.11
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 96.85
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 96.72
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 95.63
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 95.15
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 95.14
3js6_A355 Uncharacterized PARM protein; partition, segregati 94.61
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 94.34
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 80.24
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=9.5e-41  Score=273.84  Aligned_cols=156  Identities=27%  Similarity=0.402  Sum_probs=134.2

Q ss_pred             eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcC------------------CCCCc------hh-HHHHHHHHh
Q psy13414          2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERG------------------YSFTT------TA-EREIVRDIK   56 (161)
Q Consensus         2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~------------------~~~~~------~~-~~~~~~~iK   56 (161)
                      +|+|+||++|++++++++++++||+++|++|+++|.+++                  +.+..      +. +++++++||
T Consensus       173 ~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iK  252 (498)
T 3qb0_A          173 TCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECK  252 (498)
T ss_dssp             CEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHH
T ss_pred             cEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999999999998652                  22221      23 566999999


Q ss_pred             hhccccccc--HHHHHHHhhcCCCCccEEECCCCcEEeecCe-eccccccCcCCCCCCC---------------------
Q psy13414         57 EKLCYVALD--FEQEMATAASSSSLEKSYELPDGQVITIGNE-RFRCPEALFQPAFLGM---------------------  112 (161)
Q Consensus        57 e~~~~v~~~--~~~e~~~~~~~~~~~~~y~lpdg~~i~l~~e-r~~~~E~LF~p~~~~~---------------------  112 (161)
                      |++|||+.+  ++++...  ......+.|+||||+.|.+|.| ||++||+||+|+++|.                     
T Consensus       253 E~~c~Va~~~~~~~~~~~--~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~  330 (498)
T 3qb0_A          253 ETLCHICPTKTLEETKTE--LSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVP  330 (498)
T ss_dssp             HHTCCCCSSCHHHHHHHH--HHTCCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCC
T ss_pred             HhhEEecCCccHhHHhhh--ccCcCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCccccccccccccccccccccc
Confidence            999999986  5544322  1234568999999999999999 9999999999987643                     


Q ss_pred             -----------------------------------------------------------CCCCHHHHHHHHHHcCCHHHH
Q psy13414        113 -----------------------------------------------------------EACGIHETTYNSIMKCDVDIR  133 (161)
Q Consensus       113 -----------------------------------------------------------~~~~l~~~i~~si~~~~~d~r  133 (161)
                                                                                 +..||+++|.+||.+||+|+|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r  410 (498)
T 3qb0_A          331 LKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLR  410 (498)
T ss_dssp             CCBCC-----------------------------------------------------CCSCCHHHHHHHHHHTSCTTTH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCCHHHH
Confidence                                                                       567999999999999999999


Q ss_pred             HHhhcCeEEecCCCCCCChhhhhccC
Q psy13414        134 KDLYANTVLSGVLFILEKPNLYIFGN  159 (161)
Q Consensus       134 ~~l~~nIvl~GG~s~~~Gf~~RL~~~  159 (161)
                      +.||+||||+||+|++|||.+||.+|
T Consensus       411 ~~L~~nIvLsGGst~~pGf~~Rl~~E  436 (498)
T 3qb0_A          411 ATLAHNVVLTGGTSSIPGLSDRLMTE  436 (498)
T ss_dssp             HHHHTTEEEESGGGGSTTHHHHHHHH
T ss_pred             HHHhcCEEEeCCccCchhHHHHHHHH
Confidence            99999999999999999999999764
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 161
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 7e-62
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 1e-53
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 7e-49
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  188 bits (478), Expect = 7e-62
 Identities = 122/133 (91%), Positives = 128/133 (96%)

Query: 12  YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
           YALPHAI+RLDLAGRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMA
Sbjct: 23  YALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMA 82

Query: 72  TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVD 131
           TAASSSSLEKSYELPDGQVITIGNERFRCPE LFQP+F+GME+ GIHETTYNSIMKCD+D
Sbjct: 83  TAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID 142

Query: 132 IRKDLYANTVLSG 144
           IRKDLYAN V+SG
Sbjct: 143 IRKDLYANNVMSG 155
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query161
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 98.59
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 97.33
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 92.91
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 81.4
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-44  Score=263.49  Aligned_cols=158  Identities=42%  Similarity=0.732  Sum_probs=148.2

Q ss_pred             eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414          2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK   81 (161)
Q Consensus         2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~   81 (161)
                      .|+|+||+||++++++++++++||++++++|+++|.+++..+.+..+.+.++++|+++||++.++.++............
T Consensus        10 ~T~v~PV~dG~~l~~a~~~~~igG~~lt~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~e~~~~~~~~~~~~   89 (190)
T d1k8kb1          10 VTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVE   89 (190)
T ss_dssp             CEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCE
T ss_pred             cEEEEEeECCEEcccceEEEeccHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhhhhhhcccHHHHHHhhhcccceee
Confidence            69999999999999999999999999999999999999888777778899999999999999998888766555566778


Q ss_pred             EEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414         82 SYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN  159 (161)
Q Consensus        82 ~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~  159 (161)
                      .|++|||+.+.++.|||.+||+||+|+..+.+..||+++|.+||.+||+|+|+.|++||||+||+|++|||.+||..|
T Consensus        90 ~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NIvl~GG~Sl~pGf~~RL~~E  167 (190)
T d1k8kb1          90 SYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERE  167 (190)
T ss_dssp             EEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHH
T ss_pred             eeecCCCcEEEEChhhccccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCEEEECcccCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999764
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure