Psyllid ID: psy13428

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQDISLMEQGKMSF
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHcccccccccEEEEEEEHHcHHcccccccccccccccccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHEEcHHHHHHHHHHHHHHHHHHHHHccccccccccccEccccEEEEEcccccc
Coil and Loop (DISEMBL)
MILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIynnissspsqsqasaktqdISLMEQGKMSF
Flexible Loop (DISEMBL)
MILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYnnissspsqsqasaktQDISLMEQGKMSF
Low Complexity Region (SEG)
MILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNIssspsqsqasaKTQDISLMEQGKMSF
Disordered region (IsUnstruct)
**LVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN***************************
Disordered Region (DISOPRED)
*ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRI***************KTQDISLMEQGKM**
Disordered Region (DISEMBL)
MILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNIS*************DISLMEQGKMSF
Disordered Region (DISPRO)
MILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSS****QASAKTQDISLMEQ**MSF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQDISLMEQGKMSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
Q9JHS4	634	ATP-dependent Clp proteas	yes	N/A	0.701	0.074	0.708	2e-11
Q5U2U0	633	ATP-dependent Clp proteas	yes	N/A	0.701	0.074	0.687	6e-11
O76031	633	ATP-dependent Clp proteas	yes	N/A	0.701	0.074	0.687	7e-11
Q5R7N3	633	ATP-dependent Clp proteas	yes	N/A	0.701	0.074	0.687	9e-11
A4XHW1	433	ATP-dependent Clp proteas	yes	N/A	0.537	0.083	0.729	2e-08
C3LNM5	426	ATP-dependent Clp proteas	yes	N/A	0.567	0.089	0.657	3e-08
Q9KQS7	426	ATP-dependent Clp proteas	yes	N/A	0.567	0.089	0.657	3e-08
A5F6Z1	426	ATP-dependent Clp proteas	yes	N/A	0.567	0.089	0.657	3e-08
B9MQ33	433	ATP-dependent Clp proteas	yes	N/A	0.537	0.083	0.729	3e-08
Q8G5R1	472	ATP-dependent Clp proteas	yes	N/A	0.611	0.086	0.560	3e-08

>sp|Q9JHS4|CLPX_MOUSE ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Mus musculus GN=Clpx PE=1 SV=2

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 39/48 (81%), Gaps = 1/48 (2%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQ 55
           IY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI ++  Q QA A+ Q
Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQ-QAEAEKQ 219

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of clpP.
Mus musculus (taxid: 10090)

>sp|Q5U2U0|CLPX_RAT ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Rattus norvegicus GN=Clpx PE=2 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/48 (68%), Positives = 38/48 (79%), Gaps = 1/48 (2%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQ 55
           IY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI ++  Q QA  + Q
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQ-QAEVEKQ 218

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of clpP.

Rattus norvegicus (taxid: 10116)

>sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/48 (68%), Positives = 38/48 (79%), Gaps = 1/48 (2%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQ 55
           IY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI ++  Q QA  + Q
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQ-QAEVEKQ 218

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of clpP.

Homo sapiens (taxid: 9606)

>sp|Q5R7N3|CLPX_PONAB ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Pongo abelii GN=CLPX PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/48 (68%), Positives = 38/48 (79%), Gaps = 1/48 (2%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQ 55
           IY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI ++  Q QA  + Q
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQ-QAEVEKQ 218

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of clpP.

Pongo abelii (taxid: 9601)

>sp|A4XHW1|CLPX_CALS8 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=clpX PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/37 (72%), Positives = 33/37 (89%), Gaps = 1/37 (2%)

Query: 3  LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIY 38
          L  PK I E+L+++VVGQ+HAKK+LSVAVYNHYKRIY
Sbjct: 61 LPTPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIY 97

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) (taxid: 351627)

>sp|C3LNM5|CLPX_VIBCM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Vibrio cholerae serotype O1 (strain M66-2) GN=clpX PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 33/38 (86%)

Query: 7   KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSS 44
           KI E+L+ +V+GQEHAKKVL+VAVYNHYKR+ N  ++S
Sbjct: 70  KIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTS 107

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112)

>sp|Q9KQS7|CLPX_VIBCH ATP-dependent Clp protease ATP-binding subunit ClpX OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=clpX PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 33/38 (86%)

Query: 7   KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSS 44
           KI E+L+ +V+GQEHAKKVL+VAVYNHYKR+ N  ++S
Sbjct: 70  KIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTS 107

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

>sp|A5F6Z1|CLPX_VIBC3 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=clpX PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 33/38 (86%)

Query: 7   KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSS 44
           KI E+L+ +V+GQEHAKKVL+VAVYNHYKR+ N  ++S
Sbjct: 70  KIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTS 107

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) (taxid: 345073)

>sp|B9MQ33|CLPX_CALBD ATP-dependent Clp protease ATP-binding subunit ClpX OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=clpX PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/37 (72%), Positives = 33/37 (89%), Gaps = 1/37 (2%)

Query: 3  LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIY 38
          L  PK I E+L+++VVGQ+HAKK+LSVAVYNHYKRIY
Sbjct: 61 LPTPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIY 97

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Anaerocellum thermophilum (strain DSM 6725 / Z-1320) (taxid: 521460)

>sp|Q8G5R1|CLPX_BIFLO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bifidobacterium longum (strain NCC 2705) GN=clpX PE=3 SV=2

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 33/41 (80%)

Query: 7   KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQ 47
           +I++YLN++V+GQE+AK+ LSVAVYNHYKR+   +  S  Q
Sbjct: 67  QIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQ 107

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Bifidobacterium longum (strain NCC 2705) (taxid: 206672)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
332375668	582	unknown [Dendroctonus ponderosae]	0.761	0.087	0.714	9e-14
307180270	593	ATP-dependent Clp protease ATP-binding s	0.641	0.072	0.790	3e-12
332018141	592	ATP-dependent Clp protease ATP-binding s	0.641	0.072	0.767	7e-12
383855538	586	PREDICTED: ATP-dependent Clp protease AT	0.761	0.087	0.679	9e-12
189234285	604	PREDICTED: similar to ATP-dependent clp	0.791	0.087	0.660	2e-11
242016280	589	ATP-dependent Clp protease ATP-binding s	0.895	0.101	0.625	2e-11
322790207	588	hypothetical protein SINV_03991 [Solenop	0.626	0.071	0.785	2e-11
270002375	590	hypothetical protein TcasGA2_TC004428 [T	0.791	0.089	0.642	2e-11
340729247	586	PREDICTED: ATP-dependent Clp protease AT	0.761	0.087	0.679	3e-11
350417778	586	PREDICTED: ATP-dependent Clp protease AT	0.746	0.085	0.692	4e-11

>gi|332375668|gb|AEE62975.1| unknown [Dendroctonus ponderosae]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 45/56 (80%), Gaps = 5/56 (8%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQDISLMEQG 63
           IYEYLNKHVVGQE+AKKVLSVAVYNHYKRIYNN     + +Q     QD+S+MEQG
Sbjct: 144 IYEYLNKHVVGQEYAKKVLSVAVYNHYKRIYNN-----TPNQLGNSRQDMSVMEQG 194

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180270|gb|EFN68303.1| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Camponotus floridanus]

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 39/43 (90%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQA 50
           I+EYLN+HVVGQE+AKKVLSVAVYNHYKRIYNN+    SQ+QA
Sbjct: 144 IFEYLNRHVVGQEYAKKVLSVAVYNHYKRIYNNLPVQTSQTQA 186

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018141|gb|EGI58750.1| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Acromyrmex echinatior]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQA 50
           I+EYLN+HVVGQE+AKKVLSVAVYNHYKRIYNN+ +  SQ+Q 
Sbjct: 143 IFEYLNRHVVGQEYAKKVLSVAVYNHYKRIYNNLPTQNSQAQT 185

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855538|ref|XP_003703267.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Megachile rotundata]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/53 (67%), Positives = 43/53 (81%), Gaps = 2/53 (3%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN--ISSSPSQSQASAKTQDIS 58
           I+EYLNKHV+GQEHAKKVLSVAVYNHYKRIYNN  + +S   S  +  TQD++
Sbjct: 140 IFEYLNKHVIGQEHAKKVLSVAVYNHYKRIYNNFPVQNSMPGSINTTGTQDLN 192

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234285|ref|XP_969886.2| PREDICTED: similar to ATP-dependent clp protease atp-binding subunit clpx [Tribolium castaneum]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 3/56 (5%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQDISLMEQG 63
           IY+YLN+HVVGQEHAKKVLSVAVYNHYKRIYNN  +      +    QD+++MEQG
Sbjct: 144 IYDYLNRHVVGQEHAKKVLSVAVYNHYKRIYNNNPNGQGGGNSR---QDVAVMEQG 196

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016280|ref|XP_002428757.1| ATP-dependent Clp protease ATP-binding subunit Clpx, putative [Pediculus humanus corporis] gi|212513442|gb|EEB16019.1| ATP-dependent Clp protease ATP-binding subunit Clpx, putative [Pediculus humanus corporis]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 4/64 (6%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI----SSSPSQSQASAKTQDISLMEQG 63
           IYEYLN +V+GQEHAKKVLSVAVYNHYKRIYNNI    SS  S SQ  ++  + S M+  
Sbjct: 144 IYEYLNNYVIGQEHAKKVLSVAVYNHYKRIYNNIPINVSSDNSSSQPLSQRGEFSKMKYR 203

Query: 64  KMSF 67
            +SF
Sbjct: 204 VVSF 207

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790207|gb|EFZ15206.1| hypothetical protein SINV_03991 [Solenopsis invicta]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 38/42 (90%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQ 49
           I+EYLN+HVVGQE+AKKVLSVAVYNHYKRIYNN+    SQ+Q
Sbjct: 143 IFEYLNRHVVGQEYAKKVLSVAVYNHYKRIYNNLPVQNSQAQ 184

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002375|gb|EEZ98822.1| hypothetical protein TcasGA2_TC004428 [Tribolium castaneum]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 3/56 (5%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQDISLMEQG 63
           IY+YLN+HVVGQEHAKKVLSVAVYNHYKRIY   +++P+        QD+++MEQG
Sbjct: 144 IYDYLNRHVVGQEHAKKVLSVAVYNHYKRIY---NNNPNGQGGGNSRQDVAVMEQG 196

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729247|ref|XP_003402917.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Bombus terrestris]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/53 (67%), Positives = 44/53 (83%), Gaps = 2/53 (3%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN--ISSSPSQSQASAKTQDIS 58
           I+EYLNKHVVGQE+AKKVLSVAVYNHYKRIYNN  + +S   S  ++ TQD++
Sbjct: 140 IFEYLNKHVVGQEYAKKVLSVAVYNHYKRIYNNFPVQNSMQGSINASGTQDLN 192

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417778|ref|XP_003491590.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Bombus impatiens]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 2/52 (3%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN--ISSSPSQSQASAKTQDI 57
           I+EYLNKHVVGQE+AKKVLSVAVYNHYKRIYNN  + +S   S  ++ TQD+
Sbjct: 140 IFEYLNKHVVGQEYAKKVLSVAVYNHYKRIYNNFPVQNSMQGSINASGTQDL 191

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
UNIPROTKB|H0YM48	268	CLPX "ATP-dependent Clp protea	0.522	0.130	0.857	3.6e-11
ZFIN|ZDB-GENE-040912-143	610	clpx "ClpX caseinolytic peptid	0.522	0.057	0.828	1.2e-10
UNIPROTKB|F1N155	607	CLPX "Uncharacterized protein"	0.522	0.057	0.857	2.6e-10
UNIPROTKB|F1SJL5	619	CLPX "Uncharacterized protein"	0.522	0.056	0.857	2.7e-10
UNIPROTKB|E2QSS3	633	CLPX "Uncharacterized protein"	0.522	0.055	0.857	2.7e-10
UNIPROTKB|O76031	633	CLPX "ATP-dependent Clp protea	0.522	0.055	0.857	2.7e-10
RGD|1304883	633	Clpx "ClpX caseinolytic peptid	0.522	0.055	0.857	2.7e-10
UNIPROTKB|Q5U2U0	633	Clpx "ATP-dependent Clp protea	0.522	0.055	0.857	2.7e-10
MGI|MGI:1346017	634	Clpx "caseinolytic peptidase X	0.522	0.055	0.857	2.7e-10
UNIPROTKB|E1BX77	617	CLPX "Uncharacterized protein"	0.522	0.056	0.857	7.1e-10

UNIPROTKB|H0YM48 CLPX "ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 30/35 (85%), Positives = 32/35 (91%)

Query:     7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI 41
             KIY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI
Sbjct:   171 KIYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNI 205

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-040912-143 clpx "ClpX caseinolytic peptidase X homolog (E. coli)" [Danio rerio (taxid:7955)]

 Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 29/35 (82%), Positives = 34/35 (97%)

Query:     7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI 41
             KI+ YL+K+VVGQ+HAKKVLSVAVYNHYKRIYNN+
Sbjct:   160 KIFAYLDKYVVGQDHAKKVLSVAVYNHYKRIYNNM 194

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1N155 CLPX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)

Query:     7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI 41
             KIY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI
Sbjct:   145 KIYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNI 179

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0016504 "peptidase activator activity" evidence=IEA

GO:0009841 "mitochondrial endopeptidase Clp complex" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1SJL5 CLPX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)

Query:     7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI 41
             KIY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI
Sbjct:   171 KIYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNI 205

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0016504 "peptidase activator activity" evidence=IEA

GO:0009841 "mitochondrial endopeptidase Clp complex" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|E2QSS3 CLPX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)

Query:     7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI 41
             KIY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI
Sbjct:   171 KIYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNI 205

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0016504 "peptidase activator activity" evidence=IEA

GO:0009841 "mitochondrial endopeptidase Clp complex" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|O76031 CLPX "ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)

Query:     7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI 41
             KIY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI
Sbjct:   171 KIYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNI 205

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009841 "mitochondrial endopeptidase Clp complex" evidence=IDA

GO:0016504 "peptidase activator activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=NAS;IDA

GO:0005524 "ATP binding" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0004176 "ATP-dependent peptidase activity" evidence=IDA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0010952 "positive regulation of peptidase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1304883 Clpx "ClpX caseinolytic peptidase X homolog (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)

Query:     7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI 41
             KIY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI
Sbjct:   171 KIYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNI 205

GO:0003674 "molecular_function" evidence=ND

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009841 "mitochondrial endopeptidase Clp complex" evidence=IEA;ISO

GO:0010952 "positive regulation of peptidase activity" evidence=ISO

GO:0016504 "peptidase activator activity" evidence=IEA;ISO

GO:0016887 "ATPase activity" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q5U2U0 Clpx "ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)

Query:     7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI 41
             KIY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI
Sbjct:   171 KIYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNI 205

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009841 "mitochondrial endopeptidase Clp complex" evidence=IEA

GO:0016504 "peptidase activator activity" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

MGI|MGI:1346017 Clpx "caseinolytic peptidase X (E.coli)" [Mus musculus (taxid:10090)]

 Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)

Query:     7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI 41
             KIY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI
Sbjct:   172 KIYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNI 206

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006457 "protein folding" evidence=IEA

GO:0009841 "mitochondrial endopeptidase Clp complex" evidence=ISO

GO:0010952 "positive regulation of peptidase activity" evidence=ISO

GO:0016504 "peptidase activator activity" evidence=ISO

GO:0016887 "ATPase activity" evidence=IDA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=ISO

UNIPROTKB|E1BX77 CLPX "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%)

Query:     7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI 41
             KIY YL+K+VVGQ  AKKVLSVAVYNHYKRIYNNI
Sbjct:   168 KIYNYLDKYVVGQCFAKKVLSVAVYNHYKRIYNNI 202

GO:0006457 "protein folding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2GJB5	CLPX_ANAPZ	No assigned EC number	0.6764	0.5074	0.0819	yes	N/A
Q5U2U0	CLPX_RAT	No assigned EC number	0.6875	0.7014	0.0742	yes	N/A
B5YI39	CLPX_THEYD	No assigned EC number	0.6097	0.6119	0.1002	yes	N/A
C1FLA5	CLPX_CLOBJ	No assigned EC number	0.5555	0.6716	0.1048	yes	N/A
A5F6Z1	CLPX_VIBC3	No assigned EC number	0.6578	0.5671	0.0892	yes	N/A
Q9WXZ3	CLPX_THEMA	No assigned EC number	0.5333	0.6716	0.1108	yes	N/A
Q15R47	CLPX_PSEA6	No assigned EC number	0.6842	0.5522	0.0870	yes	N/A
A4SDM4	CLPX_PROVI	No assigned EC number	0.7222	0.5223	0.0799	yes	N/A
Q5PBC9	CLPX_ANAMM	No assigned EC number	0.6571	0.5223	0.0864	yes	N/A
A7FYI1	CLPX_CLOB1	No assigned EC number	0.5555	0.6716	0.1048	yes	N/A
Q0RPH1	CLPX_FRAAA	No assigned EC number	0.7419	0.4626	0.0717	yes	N/A
Q73M37	CLPX_TREDE	No assigned EC number	0.6969	0.4925	0.0795	yes	N/A
Q9JHS4	CLPX_MOUSE	No assigned EC number	0.7083	0.7014	0.0741	yes	N/A
A5I6W0	CLPX_CLOBH	No assigned EC number	0.5555	0.6716	0.1048	yes	N/A
Q8G5R1	CLPX_BIFLO	No assigned EC number	0.5609	0.6119	0.0868	yes	N/A
A7MV82	CLPX_VIBHB	No assigned EC number	0.5813	0.6268	0.0985	yes	N/A
A8L1X0	CLPX_FRASN	No assigned EC number	0.7419	0.4626	0.0720	yes	N/A
Q820F8	CLPX_STRAW	No assigned EC number	0.7419	0.4626	0.0724	yes	N/A
B5FBZ9	CLPX_VIBFM	No assigned EC number	0.7187	0.4776	0.0747	yes	N/A
C3LNM5	CLPX_VIBCM	No assigned EC number	0.6578	0.5671	0.0892	yes	N/A
Q5R7N3	CLPX_PONAB	No assigned EC number	0.6875	0.7014	0.0742	yes	N/A
B0C146	CLPX_ACAM1	No assigned EC number	0.5957	0.5820	0.0872	yes	N/A
A7GIH1	CLPX_CLOBL	No assigned EC number	0.5555	0.6716	0.1048	yes	N/A
Q9KQS7	CLPX_VIBCH	No assigned EC number	0.6578	0.5671	0.0892	yes	N/A
C3KU76	CLPX_CLOB6	No assigned EC number	0.5555	0.6716	0.1048	yes	N/A
A5ID16	CLPX_LEGPC	No assigned EC number	0.6666	0.5223	0.0825	yes	N/A
Q660R1	CLPX_BORGA	No assigned EC number	0.6923	0.5671	0.0883	yes	N/A
O76031	CLPX_HUMAN	No assigned EC number	0.6875	0.7014	0.0742	yes	N/A
A4XHW1	CLPX_CALS8	No assigned EC number	0.7297	0.5373	0.0831	yes	N/A
Q3B5I8	CLPX_PELLD	No assigned EC number	0.7222	0.5223	0.0793	yes	N/A
B1VXA8	CLPX_STRGG	No assigned EC number	0.7419	0.4626	0.0717	yes	N/A
Q2JDQ7	CLPX_FRASC	No assigned EC number	0.7419	0.4626	0.0724	yes	N/A
Q97FT7	CLPX_CLOAB	No assigned EC number	0.6578	0.5671	0.0879	yes	N/A
B9KHZ5	CLPX_ANAMF	No assigned EC number	0.6571	0.5223	0.0864	yes	N/A
B9MQ33	CLPX_CALBD	No assigned EC number	0.7297	0.5373	0.0831	yes	N/A
Q7NDN9	CLPX_GLOVI	No assigned EC number	0.5789	0.5671	0.0869	yes	N/A
Q5E6Q4	CLPX_VIBF1	No assigned EC number	0.7187	0.4776	0.0747	yes	N/A
Q5X452	CLPX_LEGPA	No assigned EC number	0.6666	0.5223	0.0825	yes	N/A
Q180E8	CLPX_CLOD6	No assigned EC number	0.6744	0.6268	0.1009	yes	N/A
Q9F316	CLPX_STRCO	No assigned EC number	0.7419	0.4626	0.0724	yes	N/A
Q8YQX7	CLPX_NOSS1	No assigned EC number	0.54	0.6567	0.0988	yes	N/A
B2IT91	CLPX_NOSP7	No assigned EC number	0.5531	0.6119	0.0919	yes	N/A
Q5WVJ1	CLPX_LEGPL	No assigned EC number	0.6666	0.5223	0.0825	yes	N/A
B1IND6	CLPX_CLOBK	No assigned EC number	0.5555	0.6716	0.1048	yes	N/A
Q7VP79	CLPX_HAEDU	No assigned EC number	0.6666	0.5373	0.0861	yes	N/A
B2A159	CLPX_NATTJ	No assigned EC number	0.6969	0.4925	0.0785	yes	N/A
B1L1D6	CLPX_CLOBM	No assigned EC number	0.5555	0.6716	0.1048	yes	N/A
A1SME0	CLPX_NOCSJ	No assigned EC number	0.6666	0.5223	0.0821	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	67
PRK05342	412	PRK05342, clpX, ATP-dependent protease ATP-binding	8e-19
COG1219	408	COG1219, ClpX, ATP-dependent protease Clp, ATPase	3e-16
TIGR00382	413	TIGR00382, clpX, endopeptidase Clp ATP-binding reg	3e-12
PRK05201	443	PRK05201, hslU, ATP-dependent protease ATP-binding	2e-06
COG1220	444	COG1220, HslU, ATP-dependent protease HslVU (ClpYQ	1e-05
TIGR00390	441	TIGR00390, hslU, ATP-dependent protease HslVU, ATP	4e-04

>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional

 Score = 77.5 bits (192), Expect = 8e-19
 Identities = 23/36 (63%), Positives = 30/36 (83%), Gaps = 1/36 (2%)

Query: 6  PK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40
          PK I  +L+++V+GQE AKKVLSVAVYNHYKR+ + 
Sbjct: 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHG 97

Length = 412

>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 70.3 bits (173), Expect = 3e-16
 Identities = 24/36 (66%), Positives = 30/36 (83%), Gaps = 1/36 (2%)

Query: 6  PK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40
          PK I  +L+++V+GQE AKKVLSVAVYNHYKR+ N 
Sbjct: 52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNK 87

Length = 408

>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX)

 Score = 59.0 bits (143), Expect = 3e-12
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 8   IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQDISLM 60
           I  +L+++V+GQE AKKVLSVAVYNHYKR+ N   +  S +       +I L+
Sbjct: 71  IKAHLDEYVIGQEQAKKVLSVAVYNHYKRL-NFEKNKKSDNGVELSKSNILLI 122

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 413

>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU; Provisional

 Score = 42.4 bits (101), Expect = 2e-06
 Identities = 11/32 (34%), Positives = 24/32 (75%), Gaps = 1/32 (3%)

Query: 6  PK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKR 36
          P+ I   L+K+++GQ+ AK+ +++A+ N ++R
Sbjct: 6  PREIVSELDKYIIGQDDAKRAVAIALRNRWRR 37

Length = 443

>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 12/37 (32%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 1  MILVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKR 36
          M  + P+ I   L+++++GQ+ AKK +++A+ N ++R
Sbjct: 1  MSEMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRR 37

Length = 444

>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 12/29 (41%), Positives = 22/29 (75%)

Query: 8  IYEYLNKHVVGQEHAKKVLSVAVYNHYKR 36
          I   L+K+++GQ+ AKK +++A+ N Y+R
Sbjct: 6  IVAELDKYIIGQDEAKKSVAIALRNRYRR 34

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in MEDLINE:98389714, is Ser in other members of the seed alignment [Protein fate, Protein folding and stabilization]. Length = 441

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.86
KOG0745|consensus	564		99.82
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	99.46
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.4
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.39
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.34
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.03
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	87.67
CHL00095	821	clpC Clp protease ATP binding subunit	87.02
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	86.37
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	83.91
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	80.42

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=4.7e-23  Score=159.47  Aligned_cols=55  Identities=44%  Similarity=0.622  Sum_probs=49.5

Q ss_pred             CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhccCCCCccccccccccccccc
Q psy13428          2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQDISLM   60 (67)
Q Consensus         2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~~~~q~~~~~~~~~~~~~~~~   60 (67)
                      +|||+||+++||+|||||++|||+|||||||||+|++...    ..+.+|+.|||++|-
T Consensus        49 lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~----~~~dvEL~KSNILLi  103 (408)
T COG1219          49 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKE----DNDDVELSKSNILLI  103 (408)
T ss_pred             CCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccC----CCCceeeeeccEEEE
Confidence            7999999999999999999999999999999999999776    222399999998873

>KOG0745|consensus

Probab=99.82  E-value=4.3e-21  Score=152.81  Aligned_cols=38  Identities=71%  Similarity=0.992  Sum_probs=37.1

Q ss_pred             CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhh
Q psy13428          2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN   39 (67)
Q Consensus         2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~   39 (67)
                      +|||+||++|||+|||||++|||+|||||||||+||.+
T Consensus       133 ~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~h  170 (564)
T KOG0745|consen  133 PPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYH  170 (564)
T ss_pred             CCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhc
Confidence            69999999999999999999999999999999999987

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=4.2e-14  Score=110.82  Aligned_cols=45  Identities=22%  Similarity=0.385  Sum_probs=41.7

Q ss_pred             CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhccCCCCc
Q psy13428          2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPS   46 (67)
Q Consensus         2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~~~~q~~   46 (67)
                      -+||+||+++||+|||||+.|||++|+|++|+|+|.+.+.+++.+
T Consensus         3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~E   47 (444)
T COG1220           3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDE   47 (444)
T ss_pred             CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhc
Confidence            479999999999999999999999999999999999998877743

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.40  E-value=2.3e-13  Score=103.98  Aligned_cols=39  Identities=54%  Similarity=0.760  Sum_probs=37.4

Q ss_pred             CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhc
Q psy13428          2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN   40 (67)
Q Consensus         2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~   40 (67)
                      +|+|++|+++||+|||||+.||++|+|||||||+|+...
T Consensus        59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~   97 (412)
T PRK05342         59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHG   97 (412)
T ss_pred             CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcc
Confidence            689999999999999999999999999999999999764

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.39  E-value=2.5e-13  Score=104.46  Aligned_cols=38  Identities=55%  Similarity=0.745  Sum_probs=36.7

Q ss_pred             CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhh
Q psy13428          2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN   39 (67)
Q Consensus         2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~   39 (67)
                      +|+|++|+++||+|||||++||+++++||||||+|++.
T Consensus        65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~  102 (413)
T TIGR00382        65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNF  102 (413)
T ss_pred             CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhcc
Confidence            68999999999999999999999999999999999976

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.34  E-value=7.6e-13  Score=103.74  Aligned_cols=40  Identities=33%  Similarity=0.497  Sum_probs=37.3

Q ss_pred             CChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhccC
Q psy13428          3 LVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNIS   42 (67)
Q Consensus         3 ~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~~~   42 (67)
                      +||++|+++||+|||||++||++++||+||||+|.+....
T Consensus         1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~   40 (441)
T TIGR00390         1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEE   40 (441)
T ss_pred             CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccc
Confidence            5999999999999999999999999999999999986543

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.03  E-value=2.2e-10  Score=90.10  Aligned_cols=39  Identities=28%  Similarity=0.484  Sum_probs=36.5

Q ss_pred             CChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcc
Q psy13428          3 LVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI   41 (67)
Q Consensus         3 ~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~~   41 (67)
                      ++|++|+++||+|||||++||+++++|+||||+|.....
T Consensus         4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~   42 (443)
T PRK05201          4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPE   42 (443)
T ss_pred             CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCc
Confidence            699999999999999999999999999999999986553

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=87.67  E-value=0.48  Score=39.55  Aligned_cols=30  Identities=23%  Similarity=0.241  Sum_probs=26.1

Q ss_pred             HHHHHHHhhhhccchhhhHHHHHHHHHHHH
Q psy13428          6 PKIYEYLNKHVVGQEHAKKVLSVAVYNHYK   35 (67)
Q Consensus         6 keI~~~LD~yVIGQe~AKKvLaVAVyNHYk   35 (67)
                      ..+.+.|.+.||||+.|++.|+.+|..+..
T Consensus       450 ~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~  479 (758)
T PRK11034        450 KNLGDRLKMLVFGQDKAIEALTEAIKMSRA  479 (758)
T ss_pred             HHHHHHhcceEeCcHHHHHHHHHHHHHHhc
Confidence            467889999999999999999999987654

>CHL00095 clpC Clp protease ATP binding subunit

Probab=87.02  E-value=0.6  Score=38.63  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=27.7

Q ss_pred             HHHHHHHhhhhccchhhhHHHHHHHHHHHHHh
Q psy13428          6 PKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRI   37 (67)
Q Consensus         6 keI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi   37 (67)
                      ..+.+.|.+.|+||+.|.+.++-|++.+...+
T Consensus       501 ~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl  532 (821)
T CHL00095        501 LHMEETLHKRIIGQDEAVVAVSKAIRRARVGL  532 (821)
T ss_pred             HHHHHHhcCcCcChHHHHHHHHHHHHHHhhcc
Confidence            46889999999999999999999998776544

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=86.37  E-value=1.4  Score=29.85  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=29.0

Q ss_pred             ChHHHHHHHhhhhccchhhhHHHHHHHHHHHHH
Q psy13428          4 VNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKR   36 (67)
Q Consensus         4 tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkR   36 (67)
                      ....+...|++.+.||+-|++++.=||..|...
T Consensus        15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~   47 (127)
T PF06309_consen   15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN   47 (127)
T ss_pred             CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC
Confidence            456788999999999999999999999999743

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=83.91  E-value=1.8  Score=31.34  Aligned_cols=36  Identities=14%  Similarity=0.314  Sum_probs=28.3

Q ss_pred             hHHHHHHHhhhhccchhhhHHH-HHHHHHHHHHhhhc
Q psy13428          5 NPKIYEYLNKHVVGQEHAKKVL-SVAVYNHYKRIYNN   40 (67)
Q Consensus         5 PkeI~~~LD~yVIGQe~AKKvL-aVAVyNHYkRi~~~   40 (67)
                      =+|+.+.||+.+||.+.+|+.+ .+..+-.+.+++..
T Consensus        13 ~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~   49 (284)
T TIGR02880        13 ITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQR   49 (284)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999987 55566666666543

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=80.42  E-value=1  Score=32.52  Aligned_cols=18  Identities=44%  Similarity=0.645  Sum_probs=16.0

Q ss_pred             hccchhhhHHHHHHHHHH
Q psy13428         16 VVGQEHAKKVLSVAVYNH   33 (67)
Q Consensus        16 VIGQe~AKKvLaVAVyNH   33 (67)
                      |+||+.||++|-+|.-..
T Consensus         5 I~GQe~aKrAL~iAAaG~   22 (206)
T PF01078_consen    5 IVGQEEAKRALEIAAAGG   22 (206)
T ss_dssp             SSSTHHHHHHHHHHHHCC
T ss_pred             hcCcHHHHHHHHHHHcCC
Confidence            899999999999988764

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	67
3hws_A	363	Crystal Structure Of Nucleotide-Bound Hexameric Clp		3e-07
3hte_A	363	Crystal Structure Of Nucleotide-Free Hexameric Clpx		4e-07
1um8_A	376	Crystal Structure Of Helicobacter Pylori Clpx Lengt		2e-05

>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx Length = 363

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 7  KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
          +I  +L+ +V+GQE AKKVL+VAVYNHYKR+ N
Sbjct: 8  EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN 40

>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx Length = 363

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 7  KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
          +I  +L+ +V+GQE AKKVL+VAVYNHYKR+ N
Sbjct: 8  EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN 40

>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx Length = 376

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 12 LNKHVVGQEHAKKVLSVAVYNHYKRI 37
          L+ +V+GQE AKKV SVAVYNHYKR+
Sbjct: 19 LDNYVIGQEQAKKVFSVAVYNHYKRL 44

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	67
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	3e-18
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	1e-17
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	2e-11
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	2e-06

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Length = 376

 Score = 75.0 bits (185), Expect = 3e-18
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 3  LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQD 56
          +  PK +   L+ +V+GQE AKKV SVAVYNHYKR+          +Q S    +
Sbjct: 9  IPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELE 63

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Length = 363

 Score = 73.4 bits (181), Expect = 1e-17
 Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 3  LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSS 44
          L  P  I  +L+ +V+GQE AKKVL+VAVYNHYKR+ N  +S+
Sbjct: 3  LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSN 45

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310

 Score = 55.7 bits (135), Expect = 2e-11
 Identities = 11/33 (33%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 6  PK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
          P+ I   L++H++GQ  AK+ +++A+ N ++R+
Sbjct: 6  PREIVSELDQHIIGQADAKRAVAIALRNRWRRM 38

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Length = 444

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 10/30 (33%), Positives = 22/30 (73%)

Query: 7  KIYEYLNKHVVGQEHAKKVLSVAVYNHYKR 36
          +I   L++H++GQ  AK+ +++A+ N ++R
Sbjct: 8  EIVSELDQHIIGQADAKRAVAIALRNRWRR 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	98.79
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	98.57
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.94
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.35

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=98.79  E-value=4.7e-09  Score=79.88  Aligned_cols=41  Identities=24%  Similarity=0.476  Sum_probs=37.7

Q ss_pred             CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhccC
Q psy13428          2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNIS   42 (67)
Q Consensus         2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~~~   42 (67)
                      -+||++|+++||+|||||+.||+.|++|++|||+|......
T Consensus         3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~   43 (444)
T 1g41_A            3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEP   43 (444)
T ss_dssp             CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccc
Confidence            48999999999999999999999999999999999976543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=98.57  E-value=4.7e-08  Score=68.84  Aligned_cols=38  Identities=53%  Similarity=0.730  Sum_probs=36.4

Q ss_pred             CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhh
Q psy13428          2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN   39 (67)
Q Consensus         2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~   39 (67)
                      +++|++|.+.||++||||+.||++|+.++++||+|.+.
T Consensus         9 ~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~   46 (376)
T 1um8_A            9 IPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSF   46 (376)
T ss_dssp             CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999999875

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.94  E-value=8.8e-06  Score=57.14  Aligned_cols=40  Identities=53%  Similarity=0.724  Sum_probs=37.2

Q ss_pred             CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcc
Q psy13428          2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI   41 (67)
Q Consensus         2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~~   41 (67)
                      +|+|.++.+.||++||||+.||+.+..++.+||+|.....
T Consensus         3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~   42 (363)
T 3hws_A            3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGD   42 (363)
T ss_dssp             CCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhcccc
Confidence            6899999999999999999999999999999999987643

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.35  E-value=0.00018  Score=47.76  Aligned_cols=37  Identities=27%  Similarity=0.568  Sum_probs=33.9

Q ss_pred             CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhh
Q psy13428          2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIY   38 (67)
Q Consensus         2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~   38 (67)
                      -++|.+|.+.|+.+|+||+.||+.+..++.++|.+..
T Consensus         3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~   39 (310)
T 1ofh_A            3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQ   39 (310)
T ss_dssp             CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTS
T ss_pred             cCCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhh
Confidence            4799999999999999999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	67
d1g41a_	443	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	2e-15
d1um8a_	364	c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2	3e-14
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	9e-13
d1r6bx3	315	c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, A	1e-08
d1qvra3	315	c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus	2e-06
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	0.001

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 65.9 bits (160), Expect = 2e-15
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 6  PK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40
          P+ I   L++H++GQ  AK+ +++A+ N ++R+   
Sbjct: 5  PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQ 40

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

 Score = 62.9 bits (152), Expect = 3e-14
 Identities = 21/34 (61%), Positives = 26/34 (76%), Gaps = 1/34 (2%)

Query: 6  PK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIY 38
          PK +   L+ +V+GQE AKKV SVAVYNHYKR+ 
Sbjct: 8  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLS 41

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 58.7 bits (141), Expect = 9e-13
 Identities = 11/34 (32%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 6  PK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIY 38
          P+ I   L++H++GQ  AK+ +++A+ N ++R+ 
Sbjct: 5  PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQ 38

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

 Score = 47.1 bits (111), Expect = 1e-08
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 7  KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
           + + L   V GQ+ A + L+ A+      + +
Sbjct: 15 NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGH 47

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

 Score = 40.5 bits (94), Expect = 2e-06
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 7  KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
          ++ E L+K VVGQ+ A + ++ A+      + +
Sbjct: 16 RLEEELHKRVVGQDEAIRAVADAIRRARAGLKD 48

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 32.6 bits (73), Expect = 0.001
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 16 VVGQEHAKKVLSVAVYNHYKR 36
           +GQE  K+ L V +     R
Sbjct: 11 YIGQERLKQKLRVYLEAAKAR 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	67
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.84
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.71
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.36
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.15
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.54
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	86.35

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.84  E-value=6.1e-22  Score=147.41  Aligned_cols=53  Identities=21%  Similarity=0.448  Sum_probs=46.7

Q ss_pred             CChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhccCCCCccccccccccccccc
Q psy13428          3 LVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQDISLM   60 (67)
Q Consensus         3 ~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~~~~q~~~~~~~~~~~~~~~~   60 (67)
                      +||++|++|||+|||||++|||+|||||||||+|++.+...     ..|+.|+|++|-
T Consensus         3 ltP~~i~~~Ld~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~-----~~ei~ksNILli   55 (443)
T d1g41a_           3 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPL-----RHEVTPKNILMI   55 (443)
T ss_dssp             CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTT-----TTTCCCCCEEEE
T ss_pred             CCHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHhhccccc-----ccccccccEEEE
Confidence            69999999999999999999999999999999999976533     347889997763

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.71  E-value=1.7e-18  Score=125.55  Aligned_cols=40  Identities=50%  Similarity=0.678  Sum_probs=37.9

Q ss_pred             CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcc
Q psy13428          2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI   41 (67)
Q Consensus         2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~~   41 (67)
                      ||||+||+++||+|||||++|||++|+||||||+|++...
T Consensus         5 ~~tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~   44 (364)
T d1um8a_           5 IPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKE   44 (364)
T ss_dssp             CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhCCeecChHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999997654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.36  E-value=1.5e-13  Score=95.57  Aligned_cols=38  Identities=26%  Similarity=0.557  Sum_probs=36.0

Q ss_pred             CChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhc
Q psy13428          3 LVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN   40 (67)
Q Consensus         3 ~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~   40 (67)
                      ++|+||+++||++||||+.||++|++||||||+|+...
T Consensus         3 ~~p~~i~~~L~~~ViGQd~A~~~l~~av~~~~~r~~~~   40 (309)
T d1ofha_           3 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQ   40 (309)
T ss_dssp             CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred             CCHHHHHHHhcCcccChHHHHHHHHHHHHHHHHHhccC
Confidence            68999999999999999999999999999999998654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=4.5e-07  Score=62.94  Aligned_cols=36  Identities=19%  Similarity=0.158  Sum_probs=32.5

Q ss_pred             ChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhh
Q psy13428          4 VNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN   39 (67)
Q Consensus         4 tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~   39 (67)
                      ..+++.++||++||||+.||+.+++||++|+..+..
T Consensus        12 ~l~~l~~~L~~~viGQ~~a~~~v~~~v~~~~~~l~~   47 (315)
T d1r6bx3          12 TLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGH   47 (315)
T ss_dssp             HHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHhCCeecChHHHHHHHHHHHHHHHccCCC
Confidence            357899999999999999999999999999887754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.54  E-value=0.00059  Score=47.08  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=26.2

Q ss_pred             HHHHHHHhhhhccchhhhHHHHHHHHHHHHHh
Q psy13428          6 PKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRI   37 (67)
Q Consensus         6 keI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi   37 (67)
                      ..+.+.|+++||||+.|++.++-+++.++..+
T Consensus        15 ~~l~~~L~~~v~GQ~~ai~~v~~~i~~~~~~l   46 (315)
T d1qvra3          15 LRLEEELHKRVVGQDEAIRAVADAIRRARAGL   46 (315)
T ss_dssp             HSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHhcCeEeCHHHHHHHHHHHHHHHhcCC
Confidence            56889999999999999998877776665443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=86.35  E-value=0.14  Score=31.64  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=19.2

Q ss_pred             HhhhhccchhhhHHHHHHHHHHHH
Q psy13428         12 LNKHVVGQEHAKKVLSVAVYNHYK   35 (67)
Q Consensus        12 LD~yVIGQe~AKKvLaVAVyNHYk   35 (67)
                      ||++ |||+.||+.|..++.++..
T Consensus         8 ~ddi-vGq~~~~~~L~~~i~~~~~   30 (239)
T d1ixsb2           8 LDEY-IGQERLKQKLRVYLEAAKA   30 (239)
T ss_dssp             GGGS-CSCHHHHHHHHHHHHHHTT
T ss_pred             HHHh-CCHHHHHHHHHHHHHHHHh
Confidence            5664 7999999999999987654